BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012442
         (463 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|356560843|ref|XP_003548696.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 488

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 268/478 (56%), Positives = 338/478 (70%), Gaps = 36/478 (7%)

Query: 18  PSSSSTTTSPTSHNPHRPTRP-RFPTHLDAPYISSSARIICEILAHASSDDIESALACTG 76
           P  S     P S NP +P +P +FP+HLDAP +SS+AR +C+IL  +S  DIESAL+ +G
Sbjct: 8   PGRSRDLKHP-SKNPTKPPQPNQFPSHLDAPNVSSTARALCDILTRSSPQDIESALSSSG 66

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV 136
           I+P  +  +EVL+LSY+ PSSAV FFRWAGRG++   + WNLMVD+LGKN  FE MW+AV
Sbjct: 67  IVPEEECTNEVLRLSYNYPSSAVKFFRWAGRGKKHPVHTWNLMVDLLGKNQLFEPMWDAV 126

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           R MK++  LSL TFAS+F SYC A +++EAVMSFDVM  +GV+QDVVAVNSLLSAIC ++
Sbjct: 127 RSMKQEQKLSLSTFASVFQSYCTAARFNEAVMSFDVMDRYGVKQDVVAVNSLLSAICSED 186

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           NQTS  LEF   +K  V PDGD+FAILLEGWEKEGN  +A  TFG+MV    WN ++V A
Sbjct: 187 NQTSFGLEFFEGIKAKVPPDGDTFAILLEGWEKEGNAAKAKTTFGDMVAHIGWNKDNVAA 246

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM- 315
           Y+ FL+TL+R   +D+ ++FL+VMK  +CFP LKFF+ ALD LVK ND+ HAV +WD+M 
Sbjct: 247 YDAFLMTLLRAGLMDDVVRFLQVMKDHDCFPGLKFFTTALDFLVKQNDADHAVPVWDVMV 306

Query: 316 ---------------------------------MVFHGAFPDSLTYNMIFECLIKNKRVH 342
                                            M FHGAFPDSLTYNMIFECL+KNK+  
Sbjct: 307 SGELVPNLIMYNAMIGLLCNNAAVDHAFRLLDEMAFHGAFPDSLTYNMIFECLVKNKKAR 366

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E E+FF EM+KNEW PT  NCA AI ML D D+PE A EIW+Y++EN + PL+ SAN LL
Sbjct: 367 ETERFFAEMVKNEWPPTGSNCAAAIAMLFDCDDPEAAHEIWSYVVENRVKPLDESANALL 426

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 460
           +GL N+ R ++V+RFAE++L+RRI IY+ TM  LK AFY E RS RD +DSL RR K 
Sbjct: 427 IGLCNMSRFTEVKRFAEDILDRRINIYQSTMSILKDAFYKEGRSARDRYDSLYRRWKA 484


>gi|224070746|ref|XP_002303222.1| predicted protein [Populus trichocarpa]
 gi|222840654|gb|EEE78201.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 268/465 (57%), Positives = 341/465 (73%), Gaps = 35/465 (7%)

Query: 31  NPHRPT-RPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ 89
           N +R T +P+F +  D+  IS SAR++ EI+   SS DIESAL+ TGI PT D+VHEVL+
Sbjct: 7   NTNRKTSKPQFESSFDSQDISPSARLLFEIITRPSSHDIESALSSTGIPPTHDIVHEVLK 66

Query: 90  LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT 149
           L +++ +SA+ FFRWAGR  +L+ YAWNLMVD+LGKN  +E MW+AVR MK++ +LS+ T
Sbjct: 67  LCHENATSAIAFFRWAGRTHKLTSYAWNLMVDLLGKNWMYEPMWDAVRTMKQEDMLSMAT 126

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F S+F SYC AGK++EA+MSF VM  +GV+QDVV VNSLL+AIC +ENQT++ALEF +++
Sbjct: 127 FVSVFGSYCMAGKFNEAIMSFYVMDKYGVQQDVVVVNSLLTAICHEENQTAKALEFFDKI 186

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           K  + P+ D+FAILLEGWEKEG+V +A  TFGEMV +  W+PE++ AY++FL TL+RG Q
Sbjct: 187 KLKIPPNADTFAILLEGWEKEGDVAKAKTTFGEMVIKVGWSPENMSAYDSFLTTLVRGSQ 246

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM-------------- 315
            DEA+KFLRVMKG+NC P LKFFSNALD+LVK NDSTHA+ LWDIM              
Sbjct: 247 ADEAVKFLRVMKGKNCLPGLKFFSNALDMLVKQNDSTHAIPLWDIMVGSGLLPNLIMYNA 306

Query: 316 --------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
                               MVF+GAFPD LT+N+IF CLIKNK+VH V KFF+EMIKNE
Sbjct: 307 MIGLHCNNNDVDNAFRLLDEMVFNGAFPDFLTFNIIFRCLIKNKKVHRVGKFFYEMIKNE 366

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
             PT  +C+ AI  L+D  +PE+AIEIWNYI+EN +LPL+ SAN LL+G  NLGR+S VR
Sbjct: 367 SPPTHFDCSAAIMTLIDGGDPEMAIEIWNYIVENHVLPLDGSANALLIGFCNLGRMSQVR 426

Query: 416 RFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 460
           RFAE+ML+RRI IYE TM KLK +F    R  RD +D L RR K 
Sbjct: 427 RFAEDMLDRRINIYESTMKKLKDSFDKTGRHGRDKYDCLIRRWKA 471


>gi|357517439|ref|XP_003629008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523030|gb|AET03484.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 266/472 (56%), Positives = 339/472 (71%), Gaps = 45/472 (9%)

Query: 31  NPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQL 90
           NP  P    FP+HLD P +SS+AR +C +L   S  DI++AL+ +GI P+ + VHEVL+L
Sbjct: 32  NPKIPKPNEFPSHLDTPNVSSTARTLCNLLTRTSPQDIDNALSSSGIHPSEECVHEVLKL 91

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF 150
           SY+ PSSA+ FFRWAGR ++ S +AWNLMVD+LG+N  FE MW+AVR MK++GVLSLPTF
Sbjct: 92  SYNYPSSAIKFFRWAGRLRKHSAHAWNLMVDLLGRNQLFEPMWDAVRTMKQEGVLSLPTF 151

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            S+F SYC AG+ +EAVMSFDVM  + ++++VVAVNSLLSAICR+ENQTS  +EFL   K
Sbjct: 152 VSVFQSYCMAGRVNEAVMSFDVMDKYDIDKNVVAVNSLLSAICREENQTSVGVEFLE--K 209

Query: 211 KI-------VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
           K+       ++ DGDS+AILLEGWEKEGN  +A  TFGEMV R  W+ ++V AY+ FL+T
Sbjct: 210 KVTGKDEGKIELDGDSYAILLEGWEKEGNATKAKTTFGEMVIRVGWSQDNVAAYDAFLMT 269

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM-------- 315
           L+R  Q DE + FL+VMK  +CFP LKFF+NALD+LVK ND+ HA+ LWD+M        
Sbjct: 270 LLRALQFDEVVGFLKVMKDHDCFPGLKFFTNALDVLVKRNDAAHAIPLWDVMVVSGLLPN 329

Query: 316 --------------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
                                     MV HGAFPDSLTYNMIFECL+KNK+V E E+FF 
Sbjct: 330 LIMYNAMIGLLCNNDEIDHAFRLLDEMVLHGAFPDSLTYNMIFECLVKNKKVRETERFFA 389

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EMIKNEW PT  NCA AI ML + D+P+ A+EIW+Y++E  +  L+ SAN +L+GL  L 
Sbjct: 390 EMIKNEWLPTTSNCAVAIEMLFNCDDPDAALEIWSYMVETRVRVLDVSANMVLIGLCKLK 449

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERRCK 459
           RLS+VRRFAEEML++RI IY+ TM+KLK+AFY ESR  S RD FD++ RR K
Sbjct: 450 RLSEVRRFAEEMLDKRISIYDSTMNKLKEAFYKESRSSSARDKFDAIYRRWK 501


>gi|255557793|ref|XP_002519926.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540972|gb|EEF42530.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 481

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 254/447 (56%), Positives = 320/447 (71%), Gaps = 34/447 (7%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           IS SAR + +IL   S  D+ESAL+ TGI  T D++HEVL+LSY +P+SAV+FFRWAGR 
Sbjct: 35  ISQSARTLSDILTRVSPHDMESALSSTGINLTCDIIHEVLKLSYSNPASAVEFFRWAGRS 94

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
              +PY+WNLMVD+LGKN  FE MW+A+R MK++ VLS+ TFAS+F SYC AG + EA+M
Sbjct: 95  GTHTPYSWNLMVDLLGKNQLFEAMWDAIRSMKQENVLSMATFASVFGSYCKAGSFSEAIM 154

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
           SFD+M  +G++QDV+AVNSLLSAIC ++NQT +A+EF +R+K  + PDGD++AILLEGWE
Sbjct: 155 SFDIMDKYGIQQDVIAVNSLLSAICNEDNQTIKAVEFFDRIKLKIPPDGDTYAILLEGWE 214

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           KEGN  +A   FGEMV    W+PE++ AY  FL  L+R  Q D+A  FLR+MK + C P 
Sbjct: 215 KEGNAAKAKNIFGEMVIHVGWSPENMPAYNAFLNLLVRESQTDDAFDFLRLMKEKGCLPG 274

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIM--------------------------------- 315
           LKF+S+ALD+L+K ND  HAV +WDIM                                 
Sbjct: 275 LKFYSDALDMLLKRNDVLHAVPMWDIMVDTGLMPNLLMYNSMIGLLCNNNDIDNAFRLFD 334

Query: 316 -MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
            MVFHGAFPD LTY MIF CL+KNK+V +   FFHEMIKNE  PT L+CA AITM +  D
Sbjct: 335 DMVFHGAFPDFLTYKMIFRCLVKNKKVSQAASFFHEMIKNENPPTHLDCAAAITMFMGGD 394

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
           +PE+AIEIWNY++++  LPL+ SAN LLVGL NLGRLS+V RFAE+ML+RRI I+E TM 
Sbjct: 395 DPEMAIEIWNYMVDDQELPLDESANALLVGLGNLGRLSEVSRFAEDMLDRRINIHESTMA 454

Query: 435 KLKKAFYNESRSMRDIFDSLERRCKTS 461
           KLK +FY E RS RD FDSL R+ K S
Sbjct: 455 KLKASFYKEGRSSRDRFDSLSRKWKAS 481


>gi|449519571|ref|XP_004166808.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 503

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 252/474 (53%), Positives = 330/474 (69%), Gaps = 39/474 (8%)

Query: 24  TTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDL 83
           T+SP S N      PRFP HLD P IS +A+ ICE+L   S ++++ AL  TG+ P+P+L
Sbjct: 34  TSSPRSRNS-----PRFPLHLDLPDISPAAKTICEVLVRVSRNEVDGALLATGLAPSPEL 88

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG 143
           V EVL++SY+SPSSA+ FFRWA +  + S Y+WNLM+D+LGKN  FE+MWN +R M+++ 
Sbjct: 89  VQEVLRVSYNSPSSAIKFFRWARQLAKQSAYSWNLMIDLLGKNELFEEMWNGIRTMRQEK 148

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           +LSLPTF S+F SYC AG+  EA M+F+VM  + VE+DVVAVNSLLSAIC +ENQTS A 
Sbjct: 149 ILSLPTFVSVFGSYCSAGRSKEARMTFEVMDRYEVEKDVVAVNSLLSAICSEENQTSEAW 208

Query: 204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
           EF  + K+ +  DG+SFAILLEGWEKEGNVE+A  TF EMV+R  WNPE+V +Y+ FLIT
Sbjct: 209 EFFEKHKEKIPLDGESFAILLEGWEKEGNVEKAKVTFDEMVKRVGWNPENVSSYDAFLIT 268

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM-------- 315
           L+RG + ++A+K L  +K   C P LKF SNALD L++ ND+ HA+ LWDI+        
Sbjct: 269 LVRGGRSEDAIKVLLKLKKNRCLPGLKFLSNALDSLIQQNDANHAILLWDIVVGSGLVPN 328

Query: 316 --------------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
                                     MVFHGAFP+SLTYN+IF  LIKNK+V EV +FF 
Sbjct: 329 LIVYNAIIGLLSENSKIDDSFRLLDSMVFHGAFPNSLTYNLIFSSLIKNKKVKEVSQFFR 388

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM+KNE  PTP +CA AITML D  +PE AI+IWNY+ EN I P++ SAN LL+GL NL 
Sbjct: 389 EMVKNECPPTPSSCAAAITMLFDGYDPETAIDIWNYMDENHIEPMDTSANALLIGLCNLN 448

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 463
           RL++VRRFA++M+++RI I E TM  LK  FY +  + R+ +D L RR + S +
Sbjct: 449 RLTEVRRFADDMIDQRIDILESTMKLLKNCFYQQRGNFRENYDGLLRRWRASSI 502


>gi|449466215|ref|XP_004150822.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 487

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/458 (53%), Positives = 322/458 (70%), Gaps = 34/458 (7%)

Query: 40  FPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAV 99
           FP HLD P IS +A+ ICE+L   S ++++ AL  TG+ P+P+LV EVL++SY+SPSSA+
Sbjct: 29  FPLHLDLPDISPAAKTICEVLVRVSRNEVDGALLATGLAPSPELVQEVLRVSYNSPSSAI 88

Query: 100 DFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159
            FFRWA +  + S Y+WNLM+D+LGKN  FE+MWN +R M+++ +LSLPTF S+F SYC 
Sbjct: 89  KFFRWARQLAKQSAYSWNLMIDLLGKNELFEEMWNGIRTMRQEKILSLPTFVSVFGSYCS 148

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           AG+  EA M+F+VM  + VE+DVVAVNSLLSAIC +ENQTS A EF  + K+ +  DG+S
Sbjct: 149 AGRSKEARMTFEVMDRYEVEKDVVAVNSLLSAICSEENQTSEAWEFFEKHKEKIPLDGES 208

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           FAILLEGWEKEGNVE+A  TF EMV+R  WNPE+V +Y+ FLITL+RG + ++A+K L  
Sbjct: 209 FAILLEGWEKEGNVEKAKVTFDEMVKRVGWNPENVSSYDAFLITLVRGGRSEDAIKVLLK 268

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM------------------------ 315
           +K   C P LKF SNALD L++ ND+ HA+ LWDI+                        
Sbjct: 269 LKKNRCLPGLKFLSNALDSLIQQNDANHAILLWDIVVGSGLVPNLIVYNAIIGLLSENSK 328

Query: 316 ----------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
                     MVFHGAFP+SLTYN+IF  LIKNK+V EV +FF EM+KNE  PTP +CA 
Sbjct: 329 IDDSFRLLDSMVFHGAFPNSLTYNLIFSSLIKNKKVKEVSQFFREMVKNECPPTPSSCAA 388

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
           AITML D  +PE AI+IWNY+ EN I P++ SAN LL+GL NL RL++VRRFA++M+++R
Sbjct: 389 AITMLFDGYDPETAIDIWNYMDENHIEPMDTSANALLIGLCNLNRLTEVRRFADDMIDQR 448

Query: 426 ILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 463
           I I E TM  LK  FY +  + R+ +D L RR + S +
Sbjct: 449 IDILESTMKLLKNCFYQQRGNFRENYDGLLRRWRASSI 486


>gi|359474755|ref|XP_002269803.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
 gi|296085476|emb|CBI29208.3| unnamed protein product [Vitis vinifera]
          Length = 464

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/448 (52%), Positives = 314/448 (70%), Gaps = 34/448 (7%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           IS  A+ + +I++  +   + +AL+ T I PTPD+V +VL+LSY + S+AV+FFRWAG  
Sbjct: 13  ISPDAKTLLQIISATAPHALVAALSATSIPPTPDVVQDVLRLSYSNSSAAVEFFRWAGLT 72

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           ++ S ++WNL+VD+LGKN +FE MW+A+R M+ +G LSL  F S+F SYC  G+ +EA+M
Sbjct: 73  RKHSAHSWNLIVDLLGKNSKFEPMWDAIRSMRNEGALSLSAFISVFGSYCSVGRVNEAIM 132

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
           SF+VM  +G+  DV A+N+LLSAIC +   T+ ALEF  ++K  + PDGD+F ILLEGWE
Sbjct: 133 SFEVMDRYGIPPDVAAMNALLSAICCEGGSTTLALEFFEKIKVKITPDGDTFMILLEGWE 192

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           +EGNV +A  TFGEMV R  W+P++++AY + L+TL+RG +V+EA+KFL VMKG+ C P 
Sbjct: 193 REGNVTKAKSTFGEMVVRLGWSPQNMVAYNSVLMTLVRGMEVEEAIKFLLVMKGKGCLPG 252

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIM--------------------------------- 315
           LKFFSNALD+L+K NDSTHA+ LWDIM                                 
Sbjct: 253 LKFFSNALDVLLKQNDSTHAIALWDIMLDGGFMPNLMMYNTIIGILCNAGDADNAFRFLD 312

Query: 316 -MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
            MVF+G F DS TYNMIF+CL+K+K+VHE  KFF EMIKNE  P P NCA AI M  D D
Sbjct: 313 EMVFYGVFADSFTYNMIFQCLVKHKKVHEAGKFFIEMIKNECPPMPSNCAAAIAMCFDGD 372

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
           +PE+AIEIW+Y++EN + P++ SAN LL+GL NL R SD RRFAE+ML+ +I I+E TM 
Sbjct: 373 DPEMAIEIWSYMIENSLSPVDESANALLIGLCNLRRFSDYRRFAEDMLDMKIKIHESTME 432

Query: 435 KLKKAFYNESRSMRDIFDSLERRCKTSQ 462
           KLK A Y + RS RD  DSL +R K SQ
Sbjct: 433 KLKNARYKDGRSARDTCDSLWKRWKVSQ 460


>gi|147859123|emb|CAN82548.1| hypothetical protein VITISV_005814 [Vitis vinifera]
          Length = 493

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/445 (52%), Positives = 312/445 (70%), Gaps = 34/445 (7%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           IS  A+ + +I++  +   + +AL+ T I PTPD+V +VL+LSY + S+AV+FFRWAG  
Sbjct: 13  ISPDAKTLLQIISATAPHALXAALSATXIPPTPDVVQDVLRLSYSNXSAAVEFFRWAGLT 72

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           ++ S ++WNL+VD+LGKN +FE MW+A+R M+ +G LSL  F S+F SYC  G+ +EA+M
Sbjct: 73  RKHSAHSWNLIVDLLGKNSKFEPMWDAIRSMRNEGALSLSAFISVFGSYCSVGRVNEAIM 132

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
           SF+VM  +G+  DV A+N+LLSAIC +   T+ ALEF  ++K  + PDGD+F ILLEGWE
Sbjct: 133 SFEVMDRYGIPPDVAAMNALLSAICCEGGSTTLALEFFEKIKVKITPDGDTFMILLEGWE 192

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           +EGNV +A  TFGEMV R  W+P++++AY + L+TL+RG +V+EA+KFL VMKG+ C P 
Sbjct: 193 REGNVTKAKSTFGEMVVRLGWSPQNMVAYNSVLMTLVRGMEVEEAIKFLLVMKGKGCLPG 252

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIM--------------------------------- 315
           LKFFSNALD+L+K NDSTHA+ LWDIM                                 
Sbjct: 253 LKFFSNALDVLLKQNDSTHAIALWDIMLDGGFMPNLMMYNTIIGILCNAGDADNAFRFLD 312

Query: 316 -MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
            MVF+G F DS TYNMIF+CL+K+K+VHE  KFF EMIKNE  P P NCA AI M  D D
Sbjct: 313 EMVFYGVFADSFTYNMIFQCLVKHKKVHEAGKFFIEMIKNECPPMPSNCAAAIAMCFDGD 372

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
           +PE+AIEIW+Y++EN + P++ SAN LL+GL NL R SD RRFAE+ML+ +I I+E TM 
Sbjct: 373 DPEMAIEIWSYMIENSLSPVDESANALLIGLCNLRRFSDYRRFAEDMLDMKIKIHESTME 432

Query: 435 KLKKAFYNESRSMRDIFDSLERRCK 459
           KLK A Y + RS RD  DSL +R K
Sbjct: 433 KLKNARYKDGRSARDTCDSLWKRWK 457


>gi|296087160|emb|CBI33534.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 201/479 (41%), Positives = 281/479 (58%), Gaps = 43/479 (8%)

Query: 20  SSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIP 79
           SSSTT S T H    P RP FPT+L+ P +S   R++CEI+A+  S  +E  L  T I  
Sbjct: 32  SSSTTDSATHH--QTPKRPSFPTYLETPNLSPKVRLLCEIIANTPSSTVEEVLHDTAIRV 89

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P+ V + L+LSY  P SAV FFRW+G       SPY+WNL+VD+LGKN  F+ MW+AV+
Sbjct: 90  SPEDVEDSLKLSYGFPGSAVKFFRWSGHQLNDNHSPYSWNLVVDMLGKNFLFDAMWDAVK 149

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
            MK+ G+LSL TFASIF SY  A +  EA+M+FDVM  +G  +D+VA+NSLLSAICR + 
Sbjct: 150 SMKKQGLLSLATFASIFSSYVIADRVREAIMTFDVMEQYGCPRDIVALNSLLSAICR-DG 208

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
           +T +A EFL  V+ ++ PD D++AILLEGWE EGN   A +TF EMV    W+P +V AY
Sbjct: 209 RTVQAAEFLRNVRGLIRPDADTYAILLEGWESEGNCGAARQTFDEMVMDIGWDPGNVSAY 268

Query: 258 ETFLITLIRGKQ-VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM- 315
           ++FL  L+ G     EA+KF  +M+   C P ++F+   L   VK +DS  A  LW  M 
Sbjct: 269 DSFLNALLHGPDGRREAMKFFEIMRDRQCSPGMRFYRIGLQECVKTSDSKGAQLLWQTML 328

Query: 316 ----------------------------------MVFHGAFPDSLTYNMIFECLIKNKRV 341
                                             MV +GAFPDS TYN++F  LI+ +++
Sbjct: 329 SRNICRPDTEMYNSMIALHCSCDNIVMARGMLDEMVCNGAFPDSETYNVLFRFLIRRRKL 388

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E    F EM++NE  P   NC  A+ + LD  +   AI++W YI+EN    LE + N L
Sbjct: 389 EEAFSIFSEMVQNECVPDLTNCNAAVRIYLDLGDVYKAIKVWKYIIENHDSGLEETGNLL 448

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 460
           + GLR+  R+ +  ++A++M+ R I +   T+ KLK A     +    ++D L R+ KT
Sbjct: 449 VTGLRDHDRIPEAVKYAKDMIVRGIKLTSSTLSKLKHALVEVGKG--PVYDELLRKWKT 505


>gi|225453152|ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 502

 Score =  364 bits (935), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 201/479 (41%), Positives = 281/479 (58%), Gaps = 43/479 (8%)

Query: 20  SSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIP 79
           SSSTT S T H    P RP FPT+L+ P +S   R++CEI+A+  S  +E  L  T I  
Sbjct: 28  SSSTTDSATHH--QTPKRPSFPTYLETPNLSPKVRLLCEIIANTPSSTVEEVLHDTAIRV 85

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P+ V + L+LSY  P SAV FFRW+G       SPY+WNL+VD+LGKN  F+ MW+AV+
Sbjct: 86  SPEDVEDSLKLSYGFPGSAVKFFRWSGHQLNDNHSPYSWNLVVDMLGKNFLFDAMWDAVK 145

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
            MK+ G+LSL TFASIF SY  A +  EA+M+FDVM  +G  +D+VA+NSLLSAICR + 
Sbjct: 146 SMKKQGLLSLATFASIFSSYVIADRVREAIMTFDVMEQYGCPRDIVALNSLLSAICR-DG 204

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
           +T +A EFL  V+ ++ PD D++AILLEGWE EGN   A +TF EMV    W+P +V AY
Sbjct: 205 RTVQAAEFLRNVRGLIRPDADTYAILLEGWESEGNCGAARQTFDEMVMDIGWDPGNVSAY 264

Query: 258 ETFLITLIRGKQ-VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM- 315
           ++FL  L+ G     EA+KF  +M+   C P ++F+   L   VK +DS  A  LW  M 
Sbjct: 265 DSFLNALLHGPDGRREAMKFFEIMRDRQCSPGMRFYRIGLQECVKTSDSKGAQLLWQTML 324

Query: 316 ----------------------------------MVFHGAFPDSLTYNMIFECLIKNKRV 341
                                             MV +GAFPDS TYN++F  LI+ +++
Sbjct: 325 SRNICRPDTEMYNSMIALHCSCDNIVMARGMLDEMVCNGAFPDSETYNVLFRFLIRRRKL 384

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E    F EM++NE  P   NC  A+ + LD  +   AI++W YI+EN    LE + N L
Sbjct: 385 EEAFSIFSEMVQNECVPDLTNCNAAVRIYLDLGDVYKAIKVWKYIIENHDSGLEETGNLL 444

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 460
           + GLR+  R+ +  ++A++M+ R I +   T+ KLK A     +    ++D L R+ KT
Sbjct: 445 VTGLRDHDRIPEAVKYAKDMIVRGIKLTSSTLSKLKHALVEVGKG--PVYDELLRKWKT 501


>gi|226494576|ref|NP_001143685.1| uncharacterized protein LOC100276413 [Zea mays]
 gi|195624570|gb|ACG34115.1| hypothetical protein [Zea mays]
          Length = 467

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 185/442 (41%), Positives = 261/442 (59%), Gaps = 42/442 (9%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFFRWAGRGQRLSPYA 115
           EI+    + ++E+AL+  GI PT ++   VL+    Y  P SAV FFRWAG+    + YA
Sbjct: 26  EIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVRFFRWAGQSVSHTAYA 85

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG---VLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           WNL+VD+LGK   FE MW+A+R MK++G   ++S+ TFAS+F SYC AG   +A+ + DV
Sbjct: 86  WNLLVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAALDV 145

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M  +G++ D VA+NSLLSAICR E +   A +   R K  + PDGD+FAILLE WEKEGN
Sbjct: 146 MDRYGLKHDAVALNSLLSAICRVEGRAQDAQDVFERTKATIPPDGDTFAILLEAWEKEGN 205

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
              A   FGEMV R  W+  +V AY++FL TL+RG  +DEA KFL+VM+ + C P + FF
Sbjct: 206 AVRAKSVFGEMVVRIGWDAANVSAYDSFLSTLVRGGLLDEAFKFLQVMRSKGCLPGINFF 265

Query: 293 SNALDILVKLNDSTHAVQLWDIM-----------------------------------MV 317
           S A+D++V+  D  +AV +W +M                                   M 
Sbjct: 266 STAVDLVVRKGDYLNAVAIWHMMVSEAGLVPNFSMYSAMIGLHCNAGSIDDALGLLDEMP 325

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
            +G F +S+TYN I E  IK+++  E E F  EM KNE  PT  NCA AI++      P 
Sbjct: 326 LNGVFANSVTYNTILEGFIKHRKAREAESFLTEMSKNEQLPTASNCAAAISLFFKEFNPS 385

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437
            AI++W  I+E+ I P E SA EL+ GL + GR ++V + A+EM++ R+ +   TM  +K
Sbjct: 386 AAIDVWRCIVEHNITPAEDSAKELIAGLLDFGRFTEVTKRADEMIDMRVELSRSTMENMK 445

Query: 438 KAFYNESRSMRDIFDSLERRCK 459
           +AF    R     +D++ RR K
Sbjct: 446 RAFAKAGRHQS--YDNIARRLK 465


>gi|357164743|ref|XP_003580152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like isoform 1 [Brachypodium distachyon]
 gi|357164746|ref|XP_003580153.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like isoform 2 [Brachypodium distachyon]
          Length = 465

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 185/448 (41%), Positives = 263/448 (58%), Gaps = 41/448 (9%)

Query: 51  SSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRG 108
           S A    EI+      ++E+AL    ++PT D+  +VL+  + Y  P SAV FFRWA + 
Sbjct: 18  SPAEAFLEIVERTPLGEVETALISCNVVPTADVAEQVLKSDICYSRPKSAVRFFRWASKS 77

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM--KEDGVLSLPTFASIFDSYCGAGKYDEA 166
            +L+ YAWNL++D+LGK   FE MW+A+R M  +E G+LS+ TFAS+F SYC  G + +A
Sbjct: 78  LKLTAYAWNLLIDILGKASMFEPMWDAIRSMSQEEGGLLSVATFASMFASYCSRGNFKDA 137

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
             +FDVM ++GV  D VA+NSLLSA+CR+++    AL+   R K  V PD D+FAILLE 
Sbjct: 138 ARAFDVMELYGVPPDAVALNSLLSAMCRRDDGAQAALDLFERSKGKVAPDADTFAILLEA 197

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           WEKEGNV+ A  TFGEM+ R  W+  ++ A++ FL TL+RG Q +EALKFL VM+   C 
Sbjct: 198 WEKEGNVQRAKSTFGEMIVRVGWDSRNIPAHDAFLTTLVRGDQFNEALKFLNVMRTNGCL 257

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIM------------------------------- 315
           P LKFF+NA+D++V+  D  +A+ +W +M                               
Sbjct: 258 PGLKFFANAIDLVVRKADYVNAIPIWQMMVSDAGIVPNLPMYNAIIALCSSVGNTDYAFN 317

Query: 316 ----MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
               M  +G F DS+TYN I E LIK  +  E E F  EM KNE  P+  NCA AI++  
Sbjct: 318 MLDEMPLNGVFADSVTYNAILEGLIKQCKARETEGFLMEMSKNEQLPSAPNCAAAISLFS 377

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 431
               P  AI++W+ I+E+ I P E SA EL+ GL +  R + V+ + +EML+  I + + 
Sbjct: 378 KEFNPSAAIDVWHCIVEHQITPAEESAKELITGLLDFSRFAQVKIYTDEMLDMGIELPQS 437

Query: 432 TMHKLKKAFYNESRSMRDIFDSLERRCK 459
            + K+K  F    +  R  +D + RR K
Sbjct: 438 IIEKMKHTFDKAGK--RQTYDQIARRLK 463


>gi|223950475|gb|ACN29321.1| unknown [Zea mays]
 gi|414586333|tpg|DAA36904.1| TPA: hypothetical protein ZEAMMB73_204717 [Zea mays]
          Length = 468

 Score =  361 bits (926), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 184/442 (41%), Positives = 259/442 (58%), Gaps = 42/442 (9%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFFRWAGRGQRLSPYA 115
           EI+    + ++E+AL+  GI PT ++   VL+    Y  P SAV FFRWAG+    + YA
Sbjct: 27  EIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVRFFRWAGQSVSHTAYA 86

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG---VLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           WNL+VD+LGK   FE MW+A+R MK++G   ++S+ TFAS+F SYC AG   +A+ + DV
Sbjct: 87  WNLLVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAALDV 146

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M  +G++ D VA+NSLLSAICR E +   A +   R K  + PDGD+FAILLE WEKEGN
Sbjct: 147 MDRYGLKHDAVALNSLLSAICRVEGRAQDAQDVFERTKATIPPDGDTFAILLEAWEKEGN 206

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
              A   FGEMV R  W+  +V AY++FL TL+RG  +DEA KFL+VM+ + C P + FF
Sbjct: 207 AVRAKSVFGEMVVRIGWDAANVSAYDSFLSTLVRGGLLDEAFKFLQVMRSKGCLPGINFF 266

Query: 293 SNALDILVKLNDSTHAVQLWDIM-----------------------------------MV 317
           S A+D++V+  D  +AV +W +M                                   M 
Sbjct: 267 STAVDLVVRKGDYLNAVAIWHMMVSEAGLVPNFSMYSAMIGLHCNAGSIDDALGLLDEMP 326

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
            +G F +S+TYN I E  IK+++  E E F  EM KNE  PT  NCA AI++      P 
Sbjct: 327 LNGVFANSVTYNTILEGFIKHRKAREAESFLTEMSKNEQLPTASNCAAAISLFFKEFNPS 386

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437
            AI++W  I+E+ I P E SA EL+ GL   GR ++V + A+EM++ R+ +   TM  +K
Sbjct: 387 AAIDVWRCIVEHNITPAEDSAKELIAGLLEFGRFTEVTKRADEMIDMRVELSRSTMENMK 446

Query: 438 KAFYNESRSMRDIFDSLERRCK 459
           + F    R     +D++ RR K
Sbjct: 447 RGFAKAGRHQS--YDNIARRLK 466


>gi|115459468|ref|NP_001053334.1| Os04g0520900 [Oryza sativa Japonica Group]
 gi|21741854|emb|CAD41444.1| OSJNBa0019D11.15 [Oryza sativa Japonica Group]
 gi|113564905|dbj|BAF15248.1| Os04g0520900 [Oryza sativa Japonica Group]
 gi|116310729|emb|CAH67525.1| OSIGBa0131L05.6 [Oryza sativa Indica Group]
 gi|125549050|gb|EAY94872.1| hypothetical protein OsI_16672 [Oryza sativa Indica Group]
 gi|125591012|gb|EAZ31362.1| hypothetical protein OsJ_15488 [Oryza sativa Japonica Group]
 gi|215697100|dbj|BAG91094.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 464

 Score =  360 bits (925), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 186/449 (41%), Positives = 263/449 (58%), Gaps = 41/449 (9%)

Query: 50  SSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGR 107
           S  A    EIL      D E+ L+  GI PT ++  +VL+  + Y  P SAV FF W+GR
Sbjct: 16  SPRAEAFLEILGRVQPGDAEAELSSCGIGPTAEVAEQVLRSRVCYSRPKSAVRFFVWSGR 75

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDE 165
             + + YAWNL+VD+LGK    E MW+AVR M ++G  ++++ TFASIF SYC +G   +
Sbjct: 76  SVKHTGYAWNLLVDILGKADMEEPMWDAVRTMNKEGGGLVTVATFASIFSSYCASGNLRK 135

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           AV +FDVM  +GVE D VA+NSLLSA+CR E +   A +   R K  V PD D+F ILLE
Sbjct: 136 AVEAFDVMGKYGVEPDAVALNSLLSAMCRGEGRAQAAQDLFERTKATVAPDADTFGILLE 195

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            WEKEGN + A  TFGEM+ R  W+  ++ AY+ FL TL+RG Q  EALKFL+VM+ + C
Sbjct: 196 AWEKEGNAQRAKSTFGEMIVRVGWDAGNMPAYDAFLSTLVRGDQFGEALKFLQVMRSKGC 255

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIM------------------------------ 315
            P LKFF+ A+D++V+  D  +++ +W +M                              
Sbjct: 256 LPGLKFFARAIDLVVRKRDYANSLAIWQMMISDAGLVPNLPMYNAMIDLCCSVGDTDYAL 315

Query: 316 -----MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
                M F+G F D +TYN I E LIK ++  E E F  EM KNE  P+P NCA AI+M 
Sbjct: 316 RMLDEMPFNGVFADFITYNAILEGLIKQRKAREAEAFLAEMSKNEQLPSPTNCAAAISMF 375

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
                P  AI++W+ I+E+ I P + SA EL+VGL + GR ++V+++ +EML+  I + +
Sbjct: 376 SKEFNPSAAIDVWHCIVEHQITPADESARELIVGLLDFGRFAEVKKYTDEMLDMGIELPQ 435

Query: 431 VTMHKLKKAFYNESRSMRDIFDSLERRCK 459
            T+  +K+ F  +       +D + RR K
Sbjct: 436 STIDNMKRTF--DKVGKHHTYDHIARRPK 462


>gi|356569552|ref|XP_003552963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 485

 Score =  351 bits (901), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 187/459 (40%), Positives = 275/459 (59%), Gaps = 41/459 (8%)

Query: 40  FPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAV 99
           FP+  D P + S+ + +C ++A  S+  +E +L    I  TP  V EVL+LSY  P  AV
Sbjct: 29  FPSFQDIPNLPSNIKSLCHLIATTSAASVEHSLQSAAISVTPHDVEEVLKLSYGFPGQAV 88

Query: 100 DFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY 157
            FFRW+GR      +PY+WNL+VD+LGKN  F+ MW+A++ M ++G+LSL TFAS+F SY
Sbjct: 89  KFFRWSGRHLNDNHTPYSWNLVVDILGKNRFFDAMWDAIKSMNKEGLLSLATFASVFSSY 148

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
             A +  EA+M+F++M  + V +DVVA+NSLLSAIC    +T  A ++L   KK+V PD 
Sbjct: 149 VAADRIREAIMAFEIMDNYCVVRDVVALNSLLSAIC-SNGRTLDACDYLQVAKKLVRPDT 207

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ-VDEALKF 276
           D++AIL+EGWE E  V  A +TF EMV    W+P +V AY++FL TL+RG   + EA+KF
Sbjct: 208 DTYAILMEGWEGENGVVGAKETFAEMVIEIGWDPLNVPAYDSFLCTLVRGPDGLLEAIKF 267

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--------------------- 315
           +  M+   CFP ++F   ALD  VK +D   A   W+++                     
Sbjct: 268 VDSMRDRRCFPGVRFLKAALDECVKSHDVRTAEFFWEVLVVGKVVQPTAEMYNLMIGLCC 327

Query: 316 --------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                         MV+ GAFPD  TYN++F+ LIK +++ E    F EM+KNE  P   
Sbjct: 328 YRGDTDAARRMLDEMVYQGAFPDVETYNLLFKFLIKGRKLREASVVFAEMVKNECVPEQD 387

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           NC  A+   +D  EP +AI++W Y++EN    LE +AN L+VGLR+L RL +  ++AE+M
Sbjct: 388 NCDAAVKAYVDCGEPVMAIKVWKYLVENYKKDLERTANFLVVGLRDLNRLPEAVKYAEDM 447

Query: 422 LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 460
           ++R I +   TM KL+++   E R    +++ L R+ K+
Sbjct: 448 IDREIRLSSNTMSKLRQSLIKERREF--VYEDLLRKSKS 484


>gi|242073718|ref|XP_002446795.1| hypothetical protein SORBIDRAFT_06g022830 [Sorghum bicolor]
 gi|241937978|gb|EES11123.1| hypothetical protein SORBIDRAFT_06g022830 [Sorghum bicolor]
          Length = 468

 Score =  351 bits (900), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 189/464 (40%), Positives = 263/464 (56%), Gaps = 55/464 (11%)

Query: 36  TRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLS--YD 93
           + PR    LD         IIC + A     ++E+AL+  GI PT ++   VL+    Y 
Sbjct: 17  SNPRAEAFLD---------IICRVPA----GEVEAALSACGIGPTAEVAELVLKSCECYK 63

Query: 94  SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG---VLSLPTF 150
            P SAV FFRWAG     + YAWNL+VD+LGK   FE MW+A+R M ++G   ++S+ TF
Sbjct: 64  RPKSAVRFFRWAGLSLSHTAYAWNLLVDILGKAAMFEPMWDAIRSMHQEGGGRLVSVATF 123

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
           AS+F SYC +G   +A+ + DVM  +G++ D VA+NSLLSAICR E +   A +   R K
Sbjct: 124 ASVFASYCASGNLKDAIAALDVMDRYGLKPDAVALNSLLSAICRVEGRAQAAHDVFERTK 183

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
             + PD D+FAILLE  EKEGN   A   FGEMV R  W+  +V AY++FL TL+RG   
Sbjct: 184 ATIPPDADTFAILLEACEKEGNAMRAKSVFGEMVVRVGWDAANVPAYDSFLSTLVRGGLF 243

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--------------- 315
           DEA KFL+VM+ + C P +KFF+ A+D++V   D  +AV +W++M               
Sbjct: 244 DEAFKFLQVMRSKGCLPGIKFFATAVDLVVLKRDYPNAVAIWNLMVSEAGLVPNFSMYNA 303

Query: 316 --------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
                               M  +G F +S+TYN I E  IK+ +  E E+F  EM KNE
Sbjct: 304 MIGLYCNAGAMDYALGMLDEMPLNGVFANSVTYNTILEGFIKHCKAREAERFLTEMSKNE 363

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
             PT  NCA AI++      P  AI++W  I+E+ I P E SA EL+ GL + GRL++V 
Sbjct: 364 QLPTASNCAAAISLFFKEFNPSAAIDVWRCIVEHNITPAEDSAKELIAGLLDFGRLTEVE 423

Query: 416 RFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 459
           R A+EM++ R+ +   TM  +K+AF    R     +D + RR K
Sbjct: 424 RRADEMIDMRVELSRSTMDNMKRAFAKAQRHQS--YDRIARRLK 465


>gi|449445204|ref|XP_004140363.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 191/476 (40%), Positives = 284/476 (59%), Gaps = 43/476 (9%)

Query: 26  SPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVH 85
           +P+ H PH+ + P F ++LD P +    +++CEI+A++ S D+E AL  TGI  T   V 
Sbjct: 47  NPSPHPPHKNSTPHFLSYLDFPNLPFQIKLMCEIIANSPSLDVEKALEDTGIHATQQDVE 106

Query: 86  EVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG 143
           EVL+LSY  P S+V FFRW+GR    + SPYAWNL++D+LGKN  F+ MW+A++ MK +G
Sbjct: 107 EVLKLSYRFPGSSVKFFRWSGRKLNDQHSPYAWNLIIDMLGKNLYFDPMWDAMKSMKSEG 166

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           +LSL TFAS+F SY  A +  +A+M+F+VM  +G   DVVA NSLLSAICR  N T  A 
Sbjct: 167 LLSLATFASVFSSYVVANRVKDAIMAFEVMDTYGCPHDVVAFNSLLSAICRDGN-TKDAD 225

Query: 204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
           EFL   K+ + PD DS+AI+LEGWE EGN   A +TFGEM+E   W+P +  AY +FL  
Sbjct: 226 EFLQIAKRKIRPDLDSYAIVLEGWESEGNTVCAKQTFGEMIEEIGWDPTNTPAYNSFLCV 285

Query: 264 LIRGKQ-VDEALKFLRVMKGENCFPTLKFFSNALDILVKL-------------------- 302
           L+R    +  AL   + +K + C+P  KFF  ALD  +K                     
Sbjct: 286 LLRDPNGLQRALVTFQRLKDKMCYPGFKFFKLALDECIKCGDIKSGKYLWNEIIQSINFQ 345

Query: 303 ----------------NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
                           ND+  A +L D M+ F GAFP++ TYN++F+ L+K +++ +   
Sbjct: 346 PDTYMFNSMIALCCHQNDTDEARRLLDEMICF-GAFPNAETYNLLFQFLLKGRKLRDASA 404

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            F EMIKNE+ P+  NC  AI + +++ +P  AI++W  +L+N    LE + N L+V L+
Sbjct: 405 IFDEMIKNEFIPSHANCNAAIRIYIESQDPNGAIKVWKCMLKNYDSDLEETGNFLIVRLQ 464

Query: 407 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 462
           +  RL +  ++A EM++R I + + T+ KLK + +   +    ++D L  + K S+
Sbjct: 465 DQKRLPEAVKYAHEMVDRAIKLKDSTLAKLKHSLFEVRK--ESMYDELMVKLKCSE 518


>gi|413921119|gb|AFW61051.1| hypothetical protein ZEAMMB73_101655 [Zea mays]
          Length = 461

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 179/444 (40%), Positives = 254/444 (57%), Gaps = 40/444 (9%)

Query: 53  ARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFFRWAGRGQR 110
           A    EI+    + ++E+AL+  GI PT ++   VL+    Y  P SAV FFRWAG+   
Sbjct: 19  AEAFLEIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVRFFRWAGQSVS 78

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
            + YAWNL+VD+LGK   FE MW+A+R MK++G   L + A+ F SYC AG   +A+ + 
Sbjct: 79  HTAYAWNLLVDILGKAAMFESMWDAIRSMKQEGGSGLVSVAT-FASYCTAGNIKDAIAAL 137

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           DVM  +G++ D VA+NSLLSAICR E +   A +   R K  + PDGD+FAILLE WEKE
Sbjct: 138 DVMDRYGLKHDAVALNSLLSAICRVEGRVQDAQDVFERTKATIPPDGDTFAILLEAWEKE 197

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN   A   FGEMV R  W+  +V AY++FL TL+RG  +DEA KFL+VM+ + C P + 
Sbjct: 198 GNAVRAKSVFGEMVVRIGWDAANVSAYDSFLSTLVRGGLLDEAFKFLQVMRSKGCLPGIN 257

Query: 291 FFSNALDILVKLNDSTHAVQLWDIM----------------------------------- 315
           FFS A+D++V+  D  +AV +W +M                                   
Sbjct: 258 FFSTAVDLVVRKGDYLNAVAIWHMMVSEAGLVPNFSMYSAMIGLHCNAGSIDDALGLLDE 317

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           M  +  F +S+TY+ I E  IK+++  E E F  EM KNE  PT  NCA AI++      
Sbjct: 318 MPLNDVFANSVTYHTILEGFIKHRKAREAESFLTEMSKNEQLPTASNCAAAISLFFKEFN 377

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 435
           P  +I++W  I E+ I   E SA EL+ GL + GR ++V + A+EM++ R+ +   TM  
Sbjct: 378 PSASIDVWRCIEEHNITLAEDSAKELIAGLLDFGRFTEVTKRADEMIDMRVELSRSTMEN 437

Query: 436 LKKAFYNESRSMRDIFDSLERRCK 459
           +K+AF    R     +D++ RR K
Sbjct: 438 MKRAFAKAGRHQS--YDNIARRLK 459


>gi|224065166|ref|XP_002301697.1| predicted protein [Populus trichocarpa]
 gi|222843423|gb|EEE80970.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 187/466 (40%), Positives = 277/466 (59%), Gaps = 42/466 (9%)

Query: 37  RPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPS 96
           +P F ++L+ P +  + +++CEI+A+  S ++ES L  T I      V +VL+LSY SP 
Sbjct: 36  KPSFQSYLETPNLPPTIKLLCEIIANTPSHNVESVLDATVIRVKQTDVEQVLKLSYSSPG 95

Query: 97  SAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF 154
           SAV FFRWAG     + SPY+WNL+VD+LGKN  F+ MW A++ MK + ++SL TFAS+F
Sbjct: 96  SAVKFFRWAGLQLNDKHSPYSWNLVVDLLGKNSMFDAMWGAIKSMKRENLVSLATFASVF 155

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
            SY    +  EA+M+F+VM  +G  ++VVA+NSLLSAICR E +T  A+EFL+  K  + 
Sbjct: 156 SSYVIVDRVKEAIMTFEVMDQYGCTRNVVALNSLLSAICR-EGRTFDAVEFLHVAKNRIL 214

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ-VDEA 273
           PD DS+AILLEGWEKE NV  A  TF +MV    W+P +V AY+TFL TL+ G   + EA
Sbjct: 215 PDADSYAILLEGWEKEMNVASARTTFADMVSMVGWDPRNVPAYDTFLSTLLMGYDGLREA 274

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM------------------ 315
           +K    MK   CFP +KFF  AL+  +K ND   A+ +W+ +                  
Sbjct: 275 MKHFDTMKDRGCFPGVKFFRLALEECLKCNDVRAAMLIWETLVARVGFRPDIQLYNLMIG 334

Query: 316 -----------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
                            M+++G FPDS TYN++F+ LIK K++ E     +EMIKNE+ P
Sbjct: 335 IHCYDNQTDIANKFLDEMIYNGVFPDSQTYNVLFQYLIKYKKLKEASFVLNEMIKNEFFP 394

Query: 359 TPLNCATAITMLLDADEPEIAIEIWNYILEN-GILPLEASANELLVGLRNLGRLSDVRRF 417
              NC  AI   +D+ EP +AI++W  ++EN G   LE + N L+V LR    + +  ++
Sbjct: 395 NKTNCNAAIKAYMDSKEPYMAIKVWKCMMENYGESDLEEAGNMLVVELRYHHMVPEAVKY 454

Query: 418 AEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 463
           AE M+ + I +   ++ KLK+    E + +  +++ L R+ K  ++
Sbjct: 455 AEVMIEKGIKLTSSSLSKLKQMLNEEKKPI--LYEELLRKWKAHRV 498


>gi|255583417|ref|XP_002532468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527826|gb|EEF29924.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 510

 Score =  337 bits (865), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 181/462 (39%), Positives = 278/462 (60%), Gaps = 41/462 (8%)

Query: 38  PRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSS 97
           P FP++L+ P +S   +++CEI+A   S  +E+ L  TG+  +   V +V++LSY  P  
Sbjct: 52  PTFPSYLETPNLSPKIKLLCEIIAKIPSSTVETILDETGLYVSQYDVEQVIKLSYSFPGP 111

Query: 98  AVDFFRWAG-RGQ-RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFD 155
           AV FFRWAG R Q   SPY+WNL+VD+LGKN  F+ MW+A++ MK   ++SL TFAS+F 
Sbjct: 112 AVKFFRWAGFRLQDNHSPYSWNLVVDLLGKNCLFDAMWDAIKSMKSKELVSLATFASVFG 171

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
           SY  AG+  +A+ +F+VM+ +GV +DVVA+NSLLSAICR + +T  A++FL   K  + P
Sbjct: 172 SYVTAGRVKDAIFTFEVMNQYGVVRDVVALNSLLSAICR-DGKTVDAVDFLFVAKNSIKP 230

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK-QVDEAL 274
           D D+FAILLEGWEKE N+  + +TF EMV    W+P +  AY+TFL TL+ G+   +E +
Sbjct: 231 DADTFAILLEGWEKELNLVNSRQTFDEMVREIGWDPANTPAYDTFLCTLLMGRIGFNEVI 290

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM------------------ 316
           +FL +MK + C P ++FF  A++  +K+ND   A  +W++MM                  
Sbjct: 291 EFLEIMKEKRCCPGMRFFRAAIEECLKVNDVRVAGLIWEVMMETNGFRPDIEMYNLMISL 350

Query: 317 -----------------VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
                            V++G FPD  TYN++F+ LIK++++ E    F+EMIKNE  P 
Sbjct: 351 YCYTNNTDIALRFLDEMVYNGVFPDRQTYNLLFQFLIKSRKLKEASVLFNEMIKNECLPN 410

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
             NC+ A+ + + + +P +AI++W  ++EN  L LE + N L+V L +L    +  ++AE
Sbjct: 411 QANCSAAVRVFMHSKDPYMAIKVWKCMIENYELDLEETGNLLIVELCDLHMDPEAVKYAE 470

Query: 420 EMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTS 461
            M+ + I +   TM KLK       +    +++ L R+ K  
Sbjct: 471 SMIGKGIKVTSPTMEKLKLCLKQARKEF--VYERLLRKWKAG 510


>gi|148906806|gb|ABR16549.1| unknown [Picea sitchensis]
          Length = 524

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 179/444 (40%), Positives = 253/444 (56%), Gaps = 41/444 (9%)

Query: 55  IICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLS 112
           I+  IL       +E+AL   G+  +   V +VL+LSY +   A+ FFRW+G    ++ S
Sbjct: 78  IVSNILKKPPRMGVENALNELGLEVSIQFVEDVLKLSYGAGMEAMKFFRWSGLKLSRKHS 137

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           P AWNL+VD+LGK   F+ MW+ ++VMK  G++S+ T +S+F +Y  AGK  EA M+FDV
Sbjct: 138 PLAWNLLVDLLGKEKLFDAMWDCIKVMKNQGIVSMETMSSVFGNYVQAGKVAEARMTFDV 197

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           +  +G  QDVVA+N  LSA CR + Q+  ALEF ++VK+ + PD D++A+LLEG E EGN
Sbjct: 198 IEQYGCPQDVVALNCFLSAFCRYK-QSKEALEFFDKVKEKIAPDADTYALLLEGLEIEGN 256

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V +A  TFGEM+ R  W P +  AY  FL TL+ G QV+EALKFL VMK   C P L FF
Sbjct: 257 VSKARTTFGEMIIRHGWLPNNTSAYNAFLSTLVNGSQVEEALKFLAVMKTRKCLPDLGFF 316

Query: 293 SNALDILVKLNDSTHAVQLWDIM------------------------------------M 316
            N L IL +  D+ +A  LW++M                                    M
Sbjct: 317 RNTLQILYQRKDTKNAYGLWELMKQSGILLDLPSYNTMIGVFCSANPIQVDFAYRLLDEM 376

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
           VF G FPD  TYN IFE LI  ++V E    F EM KN++ P   N   AI M  +AD+P
Sbjct: 377 VFTGIFPDFKTYNTIFEALITARKVEEASSIFREMTKNDFCPLYANYVMAIKMYFEADDP 436

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           E+A+ +W ++++  I P    A  L+ G  +LGR S+  +++ E + R + I   TM KL
Sbjct: 437 EMAVMMWKHMIQKAIFPKSDCAAILIDGFCDLGRASEALKYSLEAITRGVQIPVETMTKL 496

Query: 437 KKAFYNESRSMRDIFDSLERRCKT 460
           K A  +     +D +  LE++ K+
Sbjct: 497 KNA--SRQAGKQDAYGQLEKKMKS 518


>gi|116790303|gb|ABK25569.1| unknown [Picea sitchensis]
          Length = 541

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 182/482 (37%), Positives = 264/482 (54%), Gaps = 44/482 (9%)

Query: 19  SSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSA--RIICEILAHASSDDIESALACTG 76
           SS   + +P   +  RP  P+ P    + Y  +     I+  IL       +E+AL    
Sbjct: 61  SSLWDSVAPPVQSSQRPRVPKEPGLDRSQYPPTMPIEMIVSNILKKPPRMGVENALNELR 120

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG--QRLSPYAWNLMVDVLGKNGRFEQMWN 134
           +  +   V +VL+LSY +   AV FFRWAG    ++ SP AWNL+VD+LGK   F+ MW+
Sbjct: 121 LGVSIQFVEDVLKLSYGAGMEAVKFFRWAGLKLTRKHSPLAWNLLVDLLGKEKLFDAMWD 180

Query: 135 AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
            ++VMK +G + +  F+S+F +Y  AGK DEA M+F+VM  +G   DVVA+N  +SA+CR
Sbjct: 181 CIKVMKNEGTVPMEIFSSVFGNYVQAGKLDEAKMTFEVMEQYGCRHDVVALNCYISALCR 240

Query: 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
            + Q   ALEF +RVK  + PD D++A++LEGWE EGNV  A  TFGEM+    W P + 
Sbjct: 241 YK-QAKAALEFFDRVKARIAPDADTYALMLEGWEIEGNVSMAKTTFGEMIVHLGWVPNNT 299

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
            AY  FL TL+ G QV+EALKFL +MK   C P L FF N L +L +  D+ +A  LW++
Sbjct: 300 SAYNAFLSTLVNGFQVEEALKFLVMMKSLKCLPDLGFFRNTLQLLYQRKDTKNAYGLWEL 359

Query: 315 M------------------------------------MVFHGAFPDSLTYNMIFECLIKN 338
           M                                    MV +GAFPD  +YN IFE LI  
Sbjct: 360 MRQSGIVPDLPTYNTMIGVCCSVNPIQVDFADRLLVEMVCNGAFPDFRSYNTIFEALIIA 419

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
           ++V E    F EM KNE+ P   N   AI M  + ++P++A+ +W ++++  I P    A
Sbjct: 420 RKVEEASSIFREMTKNEFCPLYANYVRAIKMYFEVEDPDMAVIMWKHMIQKAIFPKSDCA 479

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRC 458
             L+ G  +LGR+S+  +++ E +NR + I   TM KLK A        +D +  LE++ 
Sbjct: 480 ATLIDGFCDLGRVSEALKYSLETINRGVEIPVETMTKLKNA---RQAGKQDAYGQLEKKM 536

Query: 459 KT 460
           K+
Sbjct: 537 KS 538


>gi|356539840|ref|XP_003538401.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 486

 Score =  323 bits (829), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 176/459 (38%), Positives = 268/459 (58%), Gaps = 41/459 (8%)

Query: 40  FPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAV 99
           FP+  D P + S+ + +C ++A  S+  +E +L    I   P  V EVL+LSY  P  +V
Sbjct: 30  FPSFQDIPNLPSNIKSLCHLIATTSAATVEHSLQSAAISVIPHDVEEVLKLSYGFPGQSV 89

Query: 100 DFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY 157
            FFRW+GR      +PY+WNL+VD+LG+N  F+ MW+AV+ M ++G+LSL TFAS+F SY
Sbjct: 90  KFFRWSGRHLNDNHTPYSWNLVVDILGRNRFFDPMWDAVKSMNKEGLLSLATFASVFSSY 149

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
             A +  EA+M+F++M  +G  +D  A+NSLLSAIC    +T  A ++L   KK V PD 
Sbjct: 150 VAADRIREAIMAFEIMDNYGCVRDAFALNSLLSAIC-SNGRTLDACDYLQVAKKFVRPDT 208

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ-VDEALKF 276
           D++AIL+EGWE E ++  A +TF EMV    W+P +V AY++FL TL+RG   + EA+KF
Sbjct: 209 DTYAILMEGWEGEKSMVSAKETFAEMVIEIGWDPANVPAYDSFLCTLVRGHDGLLEAIKF 268

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--------------------- 315
           +  M+   C+P ++F   ALD  VK +D   A   W+++                     
Sbjct: 269 VDSMRDRRCYPGVRFLKAALDECVKCHDVRTAEFFWEVLVVGKVLQPTSEMYNLMIGLCC 328

Query: 316 --------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                         MV+ GAFPD +TYN++F+ L+K +++ E    F EM++NE  P   
Sbjct: 329 YRGDTDAARRMLHEMVYQGAFPDVVTYNLLFKFLLKGRKLREASSVFAEMVQNECVPEQD 388

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           NC  A+   +D  EP +AI++W  ++EN    LE +AN L+VGL NL R     ++AE+M
Sbjct: 389 NCDLAVKAYVDCGEPVMAIKVWKCLVENYKKGLEQTANFLVVGLCNLNRPQVAVKYAEDM 448

Query: 422 LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 460
           + R I +   T+ KL+++   E R    +++ L R+ K+
Sbjct: 449 IGRGISLSSSTLSKLRQSLVKERREY--VYEDLLRKWKS 485


>gi|116787233|gb|ABK24422.1| unknown [Picea sitchensis]
          Length = 504

 Score =  323 bits (829), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 186/497 (37%), Positives = 258/497 (51%), Gaps = 51/497 (10%)

Query: 12  IKNKIIPSSSSTTTSPTS-HNPHRPTRPRFPTHLDA---PYISSSARIICEILAHASSDD 67
           + N   PS  ++   P     P +P R      LD    P  +    I+  IL       
Sbjct: 5   LHNNPTPSLWASVAPPVQLQQPLQPPRILKGPGLDPSQYPPTTPIEVIVSNILKKPPQMG 64

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGK 125
           IE+ L   G+  +   V +VL+LSY +   A+ FFRWAG     + SP AWNL+VD+LG 
Sbjct: 65  IENTLNGLGLGVSIKFVEDVLKLSYGAGMEAMKFFRWAGLKLSSKHSPLAWNLLVDLLGS 124

Query: 126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           +  F+ MW+ +++MK  G++S  T +S+F +Y  AGK DEA M+F+VM  +G  QDVVA+
Sbjct: 125 DKLFDAMWDCIKIMKNQGIVSTETLSSVFGNYVQAGKVDEARMTFEVMEQYGCRQDVVAL 184

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           N  +SA+CR + Q   ALEF + VK+ + PD D++A+LLEGWE EGNV  A  TFGEM+ 
Sbjct: 185 NCYISALCRYK-QVKAALEFFDSVKERIAPDADTYALLLEGWEIEGNVSNARSTFGEMIA 243

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
           R  W P +  AY  FL TL+ G QVDEALK+L VMK + C P L FF N L IL +    
Sbjct: 244 RLGWMPNNTSAYNAFLSTLVNGFQVDEALKYLGVMKTKKCLPDLGFFRNTLQILYQRKAM 303

Query: 306 THAVQLWDIM------------------------------------------MVFHGAFP 323
                LW +M                                          M   GAFP
Sbjct: 304 KEPYGLWQLMSLWEFMRQSGIVPDLPTYNTMIGVCCSANPIQVNSAYSLLDEMALTGAFP 363

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           DS TYN IFE  I  ++V E    F EM KNE+ P   N   AI M  +AD+ E+A+ +W
Sbjct: 364 DSKTYNTIFEAFITARKVEEASSIFREMTKNEFCPLYANYVMAIKMYFEADDSEMAVMMW 423

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
            ++++  I P    A  L+ G  +LGR+S   +++ E + R + I   TM KLK A    
Sbjct: 424 RHMIQKAIFPKSDCAAILIDGFLDLGRVSAALKYSLEAITRGVQIPVETMIKLKNASIQT 483

Query: 444 SRSMRDIFDSLERRCKT 460
            +  +D +  LE + K+
Sbjct: 484 GK--QDAYGQLEIKMKS 498


>gi|115448241|ref|NP_001047900.1| Os02g0711100 [Oryza sativa Japonica Group]
 gi|41052650|dbj|BAD07498.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|41052866|dbj|BAD07780.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537431|dbj|BAF09814.1| Os02g0711100 [Oryza sativa Japonica Group]
 gi|125540864|gb|EAY87259.1| hypothetical protein OsI_08660 [Oryza sativa Indica Group]
 gi|215687282|dbj|BAG91847.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 489

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 179/486 (36%), Positives = 261/486 (53%), Gaps = 49/486 (10%)

Query: 18  PSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGI 77
           PS S    SP +     P+ P FPT+ DAP +    R++CEILA ++ D   +       
Sbjct: 9   PSDSVAAASPAAKRARDPSAPAFPTYRDAPDLPPKIRLLCEILASSAPDVDAALDDADVR 68

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAG----RGQRLSPYAWNLMVDVLGKNGRFEQMW 133
           + + D V +VL+ SY  P +AV FFRWAG    R Q  SPY+WNL+VD+LGKN  FE MW
Sbjct: 69  VTSSD-VEQVLRFSYAHPRAAVAFFRWAGHRHLRHQH-SPYSWNLVVDLLGKNRLFEPMW 126

Query: 134 NAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
           + V  M+  G+LSL TFAS+F S   A      + +F  + M+G+++D  A+NSLLSA+C
Sbjct: 127 DTVSSMRTQGLLSLATFASVFSSL-AANPASSPLRAFVELPMYGMDRDTPALNSLLSALC 185

Query: 194 RQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           R      +RA   + R +    PD DS+AILLEG E  G+   A + F EM     ++P 
Sbjct: 186 RASRLDDARAAIPVARAEAGTRPDADSYAILLEGCEAAGDPHVAREVFDEMRHVIGFDPA 245

Query: 253 HVLAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
           +V AY++FL TLI       + +A+ +L ++  + C P  KFF  AL   +K  +   AV
Sbjct: 246 NVPAYDSFLTTLISSGSSTALMDAMDYLAILHRQRCSPGEKFFRAALAAHLKARELRGAV 305

Query: 310 QLWD------------------IM-----------------MVFHGAFPDSLTYNMIFEC 334
            LW+                  IM                 M F G FPD+ TYNM+F+ 
Sbjct: 306 VLWNDFVVRRGLIPDKEMYSTMIMLQGTLGHPEVIVEYLDEMTFDGVFPDADTYNMVFQF 365

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L+K +++ E    F EM+KNE+ P   NC+ A+ M LD  + +  I++W  ++ENG+ PL
Sbjct: 366 LLKGRKLREASAIFSEMVKNEFWPNEANCSLALRMFLDTRDWDSGIKLWKCMVENGLPPL 425

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
           E S N L+  L++  RL +  ++AE+M++R I +   TM KLK+      +    I D L
Sbjct: 426 EESGNMLVSKLKD-ERLPEACKYAEDMIDRCIKLSSSTMSKLKQCLMKVYKG--HIHDHL 482

Query: 455 ERRCKT 460
            R+ K 
Sbjct: 483 LRKWKA 488


>gi|449534079|ref|XP_004173996.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 391

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 145/330 (43%), Positives = 202/330 (61%), Gaps = 4/330 (1%)

Query: 26  SPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVH 85
           +P+ H PH+ + P F ++LD P +    +++CEI+A++ S D+E AL  TGI  T   V 
Sbjct: 47  NPSPHPPHKNSTPHFLSYLDFPNLPFQIKLMCEIIANSPSLDVEKALEDTGIHATQQDVE 106

Query: 86  EVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG 143
           EVL+LSY  P S+V FFRW+GR    + SPYAWNL++D+LGKN  F+ MW+A++ MK +G
Sbjct: 107 EVLKLSYRFPGSSVKFFRWSGRKLNDQHSPYAWNLIIDMLGKNLYFDPMWDAMKSMKSEG 166

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           +LSL TFAS+F SY  A +  +A+M+F+VM  +G   DVVA NSLLSAICR  N T  A 
Sbjct: 167 LLSLATFASVFSSYVVANRVKDAIMAFEVMDTYGCPHDVVAFNSLLSAICRDGN-TKDAD 225

Query: 204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
           EFL   K+ + PD DS+AI+LEGWE EGN   A +TFGEM+E   W+P +  AY +FL  
Sbjct: 226 EFLQIAKRKIRPDLDSYAIVLEGWESEGNTVCAKQTFGEMIEEIGWDPTNTPAYNSFLCV 285

Query: 264 LIRGKQ-VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
           L+R    +  AL   + +K + C+P  KFF  ALD  +K  D      LW+ ++      
Sbjct: 286 LLRDPNGLQRALVTFQRLKDKMCYPGFKFFKLALDECIKCGDIKSGKYLWNEIIQSINFQ 345

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           PD+  +N +           E  +   EMI
Sbjct: 346 PDTYMFNSMIALCCHQNDTDEARRLLDEMI 375


>gi|326494526|dbj|BAJ94382.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 488

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 163/463 (35%), Positives = 248/463 (53%), Gaps = 45/463 (9%)

Query: 20  SSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIP 79
           S +   +P +     P  P FPT+ DAP ++   R++CEILA +S+ D+E+AL    +  
Sbjct: 10  SDAADAAPEAKRAREPAAPAFPTYKDAPDLAPKIRLLCEILA-SSASDVEAALDDADVRV 68

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNAV 136
           T   V +VL+ SY  P  A  FFRWAG      + SPY+WNL++D+LGKN  F+ MW+ V
Sbjct: 69  TTSDVEQVLRFSYAHPRGAAAFFRWAGHRHLHHQHSPYSWNLVIDLLGKNRLFDPMWDTV 128

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
             M+  G+LSL TFASIF S   A      + +F  M  +G+++D  A+NSLLSA+CR  
Sbjct: 129 GSMRAQGLLSLATFASIFSSL-AANPTSSPLKAFVEMPRYGMDRDTPALNSLLSALCRAS 187

Query: 197 N-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
               +RA   + R +    PD DS+AILLEG E  GN   A + F EMV   +++P +V 
Sbjct: 188 RLDDARAAIPVARAEAGTRPDADSYAILLEGCEAAGNAAVAREVFDEMVHALDFDPANVP 247

Query: 256 AYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           AY++FL TL+       + +A+++L V++   C P  KF   AL   ++  +   AV LW
Sbjct: 248 AYDSFLTTLVSSGSSTALSDAMEYLAVLRRYRCSPGEKFLRAALAAYLEARELRSAVVLW 307

Query: 313 D------------------IM-----------------MVFHGAFPDSLTYNMIFECLIK 337
           D                  IM                 M  +G FPD+ TYN++ + L+K
Sbjct: 308 DEFVLRRGLVPDKEMYTTMIMLQGTLGHAEVTVKYLDEMAIYGVFPDADTYNVVLKLLLK 367

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
            +++ E    F EM+KNE  P   NC+ A+ M LD  + +  I++W  +  N + PLE  
Sbjct: 368 GRKLREASAIFKEMVKNECWPNEANCSLALGMFLDTRDWDTGIKVWKCMAANSLPPLEEG 427

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
            N L+  L++   L +  ++AE+M+++ I +   T+ KLK + 
Sbjct: 428 GNMLVSKLKD-EMLPEACKYAEDMIDQGIKLSSSTLTKLKHSL 469


>gi|357137261|ref|XP_003570219.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 488

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 162/441 (36%), Positives = 240/441 (54%), Gaps = 47/441 (10%)

Query: 40  FPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAV 99
           FPT+ DAP +    R++CEILA  ++D +E+AL    +  T   V +VL+ SY  P  A 
Sbjct: 30  FPTYKDAPDLPPKIRLLCEILASPATD-VEAALDDAAVRVTTSDVEQVLRFSYAHPRGAA 88

Query: 100 DFFRWAG----RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFD 155
            FFRWAG    R Q  SPY+WNL++D+LGKN  F+ MW+ V  M+  G+LSL +FAS+F 
Sbjct: 89  AFFRWAGHRHLRHQH-SPYSWNLVIDLLGKNRLFDPMWDTVSSMRSQGLLSLASFASVFS 147

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVD 214
           S   A      + +F  M  +G+++D  A+NSLLSA+CR      +RA   + R +    
Sbjct: 148 SL-AADPVSSPLKAFVDMPKYGMDRDTPALNSLLSALCRASRLDDARAAIPVARAEASTR 206

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF---LITLIRGKQVD 271
           PD DS+AILLEG E  G+   A + F EMV    ++P +V AY++F   L++      + 
Sbjct: 207 PDADSYAILLEGCEAAGDPAVAREVFDEMVRHVGFDPANVPAYDSFLTTLVSSSSTTALT 266

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD------------------ 313
           EA+ +L V++   C P  KF   AL   +K  D   A  LWD                  
Sbjct: 267 EAMDYLAVLRRYRCSPGEKFLRAALAAHLKAQDLRGAQVLWDDFVVRLGLIPDKEMYSSM 326

Query: 314 IM-----------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
           IM                 M F+G FPD+ TYNM+ + L+K +++ E    F EM+KNE 
Sbjct: 327 IMLQGTLGHAEVIVEYVDDMAFYGVFPDADTYNMVLKLLLKGRKLREASAIFREMVKNEC 386

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
            P   NC+ A+ M LD  + E  I++WN ++ NG+ PLE S N L+  L++   L +  +
Sbjct: 387 WPNEANCSLALRMFLDTRDWETGIKVWNCMVANGLPPLEESGNMLVSKLKD-EMLPEACK 445

Query: 417 FAEEMLNRRILIYEVTMHKLK 437
           +AE+M+++ I +   T+ KL+
Sbjct: 446 YAEDMIDQGIKVSSSTLGKLR 466


>gi|226498918|ref|NP_001144625.1| uncharacterized protein LOC100277643 [Zea mays]
 gi|195644788|gb|ACG41862.1| hypothetical protein [Zea mays]
          Length = 492

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 163/462 (35%), Positives = 244/462 (52%), Gaps = 45/462 (9%)

Query: 20  SSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILA-HASSDDIESALACTGII 78
            ++T  SP +     P  P  PT+ +AP ++   RI C+ILA  A  +++ + L    I 
Sbjct: 12  GAATVASPAAKRARDPPAPALPTNKEAPDMAPKTRIFCDILASRADDEELNAELDKADIR 71

Query: 79  PTPDLVHEVLQLSYDSPSSAVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
            +   V +VL+ SY  P +A  FFRWAG    G   SPY+WNL+VD+LGKN  FE MW+ 
Sbjct: 72  VSIADVEQVLRFSYAHPRAAAAFFRWAGYRYLGHEHSPYSWNLLVDILGKNRLFEPMWDT 131

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           V+ M+   +LSL TFASIF S   A      + +F  M  +G+ +D  A+NSLLSA+CR 
Sbjct: 132 VKSMQSQQLLSLATFASIFSSL-AATPGGSPLKAFMDMPRYGMTRDTPALNSLLSALCRA 190

Query: 196 EN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
                +RA   + R +    PD DS+AILLEG E   ++  A + F EMV+   + P++V
Sbjct: 191 NRLDDARAAIPVARAEAGTRPDADSYAILLEGSEAAADLRVAREVFDEMVQAIGFYPDNV 250

Query: 255 LAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            AY++FL TL+       + EA+++L V+    C P  KFF  AL   ++      A+ L
Sbjct: 251 PAYDSFLTTLVSSDSSTALPEAMEYLNVLSRHGCSPGEKFFRAALAAHLEARQLRGAMNL 310

Query: 312 WDIM-----------------------------------MVFHGAFPDSLTYNMIFECLI 336
           WD                                     M+ +G FPD+ TYN++ + L+
Sbjct: 311 WDDFVGRRGLVPDMEMYNTMIKLQGSLGHAELIVGYLDDMISNGVFPDTNTYNVVLQLLL 370

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           K K+  E    F EM+KNE  P   NC+ A+ M LD    E  I++W  ++ENG+ PL+ 
Sbjct: 371 KGKKHREAAAIFSEMVKNECWPNEGNCSLALRMFLDTHYWETGIKVWCCMVENGLPPLQE 430

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
             N L+  L++  RL +  ++AE+M++R I +   T+ KLK+
Sbjct: 431 CGNMLVAKLKD-DRLPEACKYAEDMIDRGIKLSSATLSKLKQ 471


>gi|413938524|gb|AFW73075.1| hypothetical protein ZEAMMB73_887223 [Zea mays]
          Length = 492

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 163/462 (35%), Positives = 243/462 (52%), Gaps = 45/462 (9%)

Query: 20  SSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILA-HASSDDIESALACTGII 78
            ++T  SP +     P  P  PT+ +AP ++   RI C+ILA  A  +++ + L    I 
Sbjct: 12  GAATVASPAAKRARDPPAPALPTNKEAPDMAPKTRIFCDILASRADDEELNAELDKADIR 71

Query: 79  PTPDLVHEVLQLSYDSPSSAVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
            +   V +VL+ SY  P +A  FFRWAG    G   SPY+WNL+VD+LGKN  FE MW+ 
Sbjct: 72  VSIADVEQVLRFSYAHPRAAAAFFRWAGYRYLGHEHSPYSWNLLVDILGKNRLFEPMWDT 131

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           V+ M+   +LSL TFASIF S   A      + +F  M  +G+ +D  A+NSLLSA+CR 
Sbjct: 132 VKSMQSQQLLSLATFASIFSSL-AATPGGSPLKAFMDMPRYGMTRDTPALNSLLSALCRA 190

Query: 196 EN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
                +RA   + R +    PD DS+AILLEG E   ++  A + F EMV+   + P++V
Sbjct: 191 NRLDDARAAIPVARAEAGTRPDADSYAILLEGSEAAADLRVAREVFDEMVQAIGFYPDNV 250

Query: 255 LAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            AY++FL TL+       + EA+++L V+    C P  KFF  AL   +       A+ L
Sbjct: 251 PAYDSFLTTLVSSDSSTALPEAMEYLNVLSRHGCSPGEKFFRAALAAHLDARQLRGAMNL 310

Query: 312 WDIM-----------------------------------MVFHGAFPDSLTYNMIFECLI 336
           WD                                     M+ +G FPD+ TYN++ + L+
Sbjct: 311 WDDFVGRRGLVPDMEMYNTMIKLQGSLGHAELIVGYLDDMISNGVFPDTNTYNVVLQLLL 370

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           K K+  E    F EM+KNE  P   NC+ A+ M LD    E  I++W  ++ENG+ PL+ 
Sbjct: 371 KGKKHREAAAIFSEMVKNECWPNEGNCSLALRMFLDTHYWETGIKVWCCMVENGLPPLQE 430

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
             N L+  L++  RL +  ++AE+M++R I +   T+ KLK+
Sbjct: 431 CGNMLVAKLKD-DRLPEACKYAEDMIDRGIKLSSATLSKLKQ 471


>gi|413951473|gb|AFW84122.1| hypothetical protein ZEAMMB73_475584 [Zea mays]
          Length = 354

 Score =  248 bits (633), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 135/340 (39%), Positives = 189/340 (55%), Gaps = 23/340 (6%)

Query: 55  IICEILAHASSDDIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFFRWAGRGQRLS 112
           IIC +L      ++E+AL+  GI PT ++   VL+    Y  P S+V FFRWAG+    +
Sbjct: 26  IICRVLV----GEVEAALSACGIGPTAEVEELVLKSRECYKRPKSSVRFFRWAGQSVSHT 81

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG---VLSLPTFASIFDSYCGAGKYDEAVMS 169
            YAWNL+VD+LGK   FE MW+A+R MK++G   ++S+ TFAS+F SYC AG   +A+ +
Sbjct: 82  AYAWNLLVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAA 141

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
            DVM  +G++ D VA+NSLLSAICR E +   A +   R K  + PDGD+FAILLE WEK
Sbjct: 142 LDVMDRYGLKHDAVALNSLLSAICRVEGRMQDAQDVFERTKATIPPDGDTFAILLEAWEK 201

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           EGN   A   FGEMV R  W+  +             G  ++    +  ++      P  
Sbjct: 202 EGNAVRAKSVFGEMVVRIGWDAAN-------------GDYLNAVAIWHMMVSEAGLVPNF 248

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             +S  + +         A+ L D  M  +GAF +S+TY+ I E  I N++  E E F  
Sbjct: 249 SMYSAMIGLHCNAGSIDDALGLLD-EMPLNGAFANSVTYHTILEGFINNRKAREAESFLT 307

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
           EM KNE  PT  NC  AI++      P  AI++W  I E+
Sbjct: 308 EMSKNEQLPTASNCDVAISLFFKEFNPSAAIDVWRCIEEH 347


>gi|413917805|gb|AFW57737.1| hypothetical protein ZEAMMB73_139699 [Zea mays]
          Length = 276

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/240 (48%), Positives = 157/240 (65%), Gaps = 5/240 (2%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFFRWAGRGQRLSPYA 115
           EI+    + ++E+AL+  GI PT ++   VL+    Y  P SAV FFRWAG+    + YA
Sbjct: 27  EIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVCFFRWAGQSVSHTAYA 86

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG---VLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           WNL VD+LGK   FE MW+A+R MK++G   ++S+ TFAS+F SYC AG   +A+ + DV
Sbjct: 87  WNLHVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAALDV 146

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M  +G++ D VA+NSLLSAICR E +   A +   R K  +  DGD+FAILLE WEKEGN
Sbjct: 147 MDRYGLKHDSVALNSLLSAICRVEGRAQDAQDVFERTKATIPSDGDTFAILLEAWEKEGN 206

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
              A   FGEMV R  W+  +V  Y++FL TL+RG  +DEA KFL+VM+ + C P + FF
Sbjct: 207 AVRAKSVFGEMVVRIGWDAANVSVYDSFLSTLVRGGLLDEAFKFLQVMRSKGCLPGINFF 266


>gi|125583433|gb|EAZ24364.1| hypothetical protein OsJ_08117 [Oryza sativa Japonica Group]
          Length = 438

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/353 (37%), Positives = 193/353 (54%), Gaps = 43/353 (12%)

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGRGQ---RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK 140
           V +VL+ SY  P +AV FFRWAG      + SPY+WNL+VD+LGKN  FE MW+ V  M+
Sbjct: 74  VEQVLRFSYAHPRAAVAFFRWAGHRHLRHQHSPYSWNLVVDLLGKNRLFEPMWDTVSSMR 133

Query: 141 EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QT 199
             G+LSL TFAS+F S   A      + +F  + M+G+++D  A+NSLLSA+CR      
Sbjct: 134 TQGLLSLATFASVFSSLA-ANPASSPLRAFVELPMYGMDRDTPALNSLLSALCRASRLDD 192

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
           +RA   + R +    PD DS+AILLEG E  G+   A + F EM     ++P +V AY++
Sbjct: 193 ARAAIPVARAEAGTRPDADSYAILLEGCEAAGDPHVAREVFDEMRHVIGFDPANVPAYDS 252

Query: 260 FLITLIRGKQ---VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD--- 313
           FL TLI       + +A+ +L ++  + C P  KFF  AL   +K  +   AV LW+   
Sbjct: 253 FLTTLISSGSSTALMDAMDYLAILHRQRCSPGEKFFRAALAAHLKARELRGAVVLWNDFV 312

Query: 314 ---------------IM-----------------MVFHGAFPDSLTYNMIFECLIKNKRV 341
                          IM                 M F G FPD+ TYNM+F+ L+K +++
Sbjct: 313 VRRGLIPDKEMYSTMIMLQGTLGHPEVIVEYLDEMTFDGVFPDADTYNMVFQFLLKGRKL 372

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
            E    F EM+KNE+ P   NC+ A+ M LD  + +  I++W  ++ENG+ P+
Sbjct: 373 REASAIFSEMVKNEFWPNEANCSLALRMFLDTRDWDSGIKLWKCMVENGLPPI 425


>gi|414586334|tpg|DAA36905.1| TPA: hypothetical protein ZEAMMB73_204717 [Zea mays]
          Length = 239

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 99/204 (48%), Positives = 133/204 (65%), Gaps = 5/204 (2%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFFRWAGRGQRLSPYA 115
           EI+    + ++E+AL+  GI PT ++   VL+    Y  P SAV FFRWAG+    + YA
Sbjct: 27  EIICRVPAGEVEAALSACGIGPTAEVEELVLKSRECYKRPKSAVRFFRWAGQSVSHTAYA 86

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG---VLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           WNL+VD+LGK   FE MW+A+R MK++G   ++S+ TFAS+F SYC AG   +A+ + DV
Sbjct: 87  WNLLVDILGKAAMFEPMWDAIRSMKQEGGGGLVSVATFASVFASYCAAGNIKDAIAALDV 146

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M  +G++ D VA+NSLLSAICR E +   A +   R K  + PDGD+FAILLE WEKEGN
Sbjct: 147 MDRYGLKHDAVALNSLLSAICRVEGRAQDAQDVFERTKATIPPDGDTFAILLEAWEKEGN 206

Query: 233 VEEANKTFGEMVERFEWNPEHVLA 256
              A   FGEMV R  W+  +V A
Sbjct: 207 AVRAKSVFGEMVVRIGWDAANVSA 230


>gi|238011542|gb|ACR36806.1| unknown [Zea mays]
          Length = 369

 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/347 (36%), Positives = 182/347 (52%), Gaps = 9/347 (2%)

Query: 20  SSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILA-HASSDDIESALACTGII 78
            ++T  SP +     P  P  PT+ +AP ++   RI C+ILA  A  +++ + L    I 
Sbjct: 12  GAATVASPAAKRARDPPAPALPTNKEAPDMAPKTRIFCDILASRADDEELNAELDKADIR 71

Query: 79  PTPDLVHEVLQLSYDSPSSAVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
            +   V +VL+ SY  P +A  FFRWAG    G   SPY+WNL+VD+LGKN  FE MW+ 
Sbjct: 72  VSIADVEQVLRFSYAHPRAAAAFFRWAGYRYLGHEHSPYSWNLLVDILGKNRLFEPMWDT 131

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           V+ M+   +LSL TFASIF S   A      + +F  M  +G+ +D  A+NSLLSA+CR 
Sbjct: 132 VKSMQSQQLLSLATFASIFSS-LAATPGGSPLKAFMDMPRYGMTRDTPALNSLLSALCRA 190

Query: 196 EN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
                +RA   + R +    PD DS+AILLEG E   ++  A + F EMV+   + P++V
Sbjct: 191 NRLDDARAAIPVARAEAGTRPDADSYAILLEGSEAAADLRVAREVFDEMVQAIGFYPDNV 250

Query: 255 LAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            AY++FL TL+       + EA+++L V+    C P  KFF  AL   +       A+ L
Sbjct: 251 PAYDSFLTTLVSSDSSTALPEAMEYLNVLSRHGCSPGEKFFRAALAAHLDARQLRGAMNL 310

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
           WD  +   G  PD   YN + +          +  +  +MI N   P
Sbjct: 311 WDDFVGRRGLVPDMEMYNTMIKLQGSLGHAELIVGYLDDMISNGVFP 357


>gi|42565430|gb|AAS20986.1| pentatricopeptide repeat protein-like protein [Hyacinthus
           orientalis]
          Length = 236

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/187 (49%), Positives = 113/187 (60%), Gaps = 35/187 (18%)

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           AILL GWEK GNV+ A  TFGEMV R  WNP ++ AY+ FL TL+R  Q  EA+ FLRVM
Sbjct: 1   AILLAGWEKAGNVQRAKTTFGEMVVRVGWNPSNMSAYDAFLTTLVRAGQPAEAINFLRVM 60

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM------------------------- 315
           K +NC P +KFFS ALDILVK ND+ HAV LWD+M                         
Sbjct: 61  KSKNCHPGIKFFSTALDILVKNNDARHAVALWDLMVTDSGLVPDTVMYNAIIALSCNNLD 120

Query: 316 ----------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
                     M FHGAFPD +TYN IFECL++ +R ++  KFF EM +NE +P+P NC  
Sbjct: 121 FDSAYRFLDAMPFHGAFPDPITYNTIFECLMRGRRANDAGKFFAEMRRNEQRPSPSNCLA 180

Query: 366 AITMLLD 372
           AI + L+
Sbjct: 181 AIKLFLE 187


>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Glycine max]
          Length = 461

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 207/433 (47%), Gaps = 40/433 (9%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--G 106
           +  ++  +C+++    +  +++AL  TG+  +PDLV  VL+   ++   A  FF WA   
Sbjct: 12  VGEASERVCKVMMTCPTLGLDTALNQTGVRVSPDLVENVLKRFENAGMPAFRFFEWAEKQ 71

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RG   S  A++LM++ L K  +++ +W+ V  M++ G+L++ TF  +   Y  A K DEA
Sbjct: 72  RGYSHSIRAYHLMIESLAKIRQYQIVWDLVSAMRKKGMLNVETFCIMMRKYARANKVDEA 131

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           V +F+VM  + V  ++ A N LLSA+C+  N   +A E  + +K    PD  S++ILLEG
Sbjct: 132 VYTFNVMDKYDVVPNLAAFNGLLSALCKS-NNVRKAQEIFDAMKGQFVPDEKSYSILLEG 190

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           W K  N+  A + F EMVE    +P+ V+ Y   +  L +  +VDEA++ ++ M   NC 
Sbjct: 191 WGKAPNLPRAREVFREMVEA-GCDPD-VVTYGIMVDVLCKAGRVDEAVEVVKEMDVGNCR 248

Query: 287 PTLKFFS-------------NALDILVKLND---STHAVQLWDIMMVF------------ 318
           PT   +S             +A+D  +++         V    ++  F            
Sbjct: 249 PTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHRV 308

Query: 319 ------HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
                 +G  P+S T N+I   +I   +     + F  MIK   +P        I M  +
Sbjct: 309 LKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMIK-LCEPDADTYTMMIKMFCE 367

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
            +E E+A++IW Y+     +P   + + L+ GL      +      EEM+ + I    +T
Sbjct: 368 KNELEMALKIWKYMKSKQFVPSMHTFSALIKGLCEKDNAAKACVVMEEMIEKGIRPSRIT 427

Query: 433 MHKLKKAFYNESR 445
             +L++    E R
Sbjct: 428 FGRLRQLLIKEGR 440


>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
 gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
          Length = 487

 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 125/458 (27%), Positives = 220/458 (48%), Gaps = 50/458 (10%)

Query: 42  THLDAPYISSSARIICE-ILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVD 100
           T LDA   S  A+ +C+ I++   +  +E  L  +G+  TP++   VL+   ++   A  
Sbjct: 31  TLLDA---SDLAKRLCKLIISCRKASAVEHELDHSGVRVTPEVAERVLERLDNAGMLAYR 87

Query: 101 FFRWAGRGQR----LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156
           FF WA R +R     +  +++ +V  L K  +++ MW+ V VM+++GV ++ TF+ I   
Sbjct: 88  FFEWARRQKRGGCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRKEGVANVETFSIIMRK 147

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
           Y  A K+DEAV +F++M  +GV  ++ A NSLL A+C+ +N   +A E  +++     PD
Sbjct: 148 YARAQKFDEAVYTFNIMERYGVAHNLAAFNSLLGALCKSKN-VRKAQEIFDKMNNRFSPD 206

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +++ILLEGW +  N+ +  + + +M+      P+ ++ Y   +  L +  +V+EA+  
Sbjct: 207 AKTYSILLEGWGRAPNLPKMREVYSDMLAA-GCQPD-IVTYGIMVDALCKTGRVEEAVCV 264

Query: 277 LRVMKGENCFPTLKFFS----------------------------------NAL-DILVK 301
           ++ M    C PT   +S                                  NAL     K
Sbjct: 265 VQDMSSRGCQPTTFIYSVLVHTYGVDMRIEDAVATFLDMEKDGIVPDVVVYNALVTAFCK 324

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
           +    +A ++ D M   HG  P+S T+N+I   LI   +  E  + F  MIK   +P   
Sbjct: 325 VKKFDNAFRVMDDME-GHGISPNSRTWNIILNTLISLGKDDEAYRVFRNMIK-RCKPDSD 382

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
                I M  + D+ E+A+++W Y+     LP   + + L+ GL + G +S      E+M
Sbjct: 383 TYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDM 442

Query: 422 LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 459
           + + I     T  KL++    E R  +D+ D L  + K
Sbjct: 443 IEKGIRPPGSTFGKLRQLLLKEGR--KDVLDFLVEKMK 478


>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Vitis vinifera]
          Length = 476

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 208/439 (47%), Gaps = 44/439 (10%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SP 113
           IC+I+      +++++L+ +GI  +P +V  VL+   ++   A  FF WAG+ +    S 
Sbjct: 18  ICKIMISCPKLELDTSLSESGIRVSPIVVENVLKRFENAGMLAYQFFEWAGKQRNYTHSI 77

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            A++ M++ L K  +++ MW+ V  M+   +L++ TF  I   Y  + K  EAV +F++M
Sbjct: 78  RAYHTMIESLAKIRQYQIMWDLVNKMRSLKILNVETFCIIMRKYARSQKVKEAVYTFNIM 137

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             + V  ++ A NSLLSA+C+ +N   +A E  N +K    PD  +++ILLEGW K  N+
Sbjct: 138 EKYDVPPNLAAFNSLLSALCKSKN-VVKAQEIFNGMKDQFIPDSKTYSILLEGWGKAPNL 196

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A + F EMV+    +P+ ++ Y   +  L +  +VDEA+  ++ M    C PT   +S
Sbjct: 197 PKAREIFREMVD-MGCDPD-IVTYGIMVDILCKAGRVDEAVGIVKEMDSSVCKPTSFIYS 254

Query: 294 ----------------------------------NAL-DILVKLNDSTHAVQLWDIMMVF 318
                                             NAL     K+N   +A ++ + M   
Sbjct: 255 VLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLKNAYRVLNEMDC- 313

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            G  P+S T N+I   LI      E  + F  MIK    P        I M  + D+ E+
Sbjct: 314 KGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMIK-VCDPDADTYTMMIKMFCENDKLEM 372

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
           A+++W Y+     +P   + + L+ GL   G  S      EEM+ + I    VT  KLK+
Sbjct: 373 ALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACILLEEMIEKGIRPSSVTFGKLKQ 432

Query: 439 AFYNESRSMRDIFDSLERR 457
               E R   D+ + L+ +
Sbjct: 433 LLIKEGRE--DVLEFLQEK 449


>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 486

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 215/447 (48%), Gaps = 47/447 (10%)

Query: 53  ARIICE-ILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQR- 110
           A+ +C+ I++   +  +E  L  + +  TPD+   VL+   ++   A  FF WA + +R 
Sbjct: 38  AKRLCKLIISCQKASGLELELDHSDLRVTPDVAERVLERLDNAGMLAYRFFEWARKQKRG 97

Query: 111 ---LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167
               +  +++ +V  L K  +++ MW+ V +M+ +GV+++ TF  I   Y  A K+DEAV
Sbjct: 98  GCNHTIRSYHTVVASLAKIRQYQLMWDVVAIMRREGVVNVETFGIIMRKYARAQKFDEAV 157

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
            +F++M  +GV  ++ A NSLL A+C+ +N   +A E  +++    +PD  +++ILLEGW
Sbjct: 158 YTFNIMEKYGVVPNLAAFNSLLGALCKSKN-VRKAQEIFDKMNGRFNPDAKTYSILLEGW 216

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            K  N+ +  + + EM++     P+ ++ Y   + +L +  +V+EA+  ++ M    C P
Sbjct: 217 GKAPNLPKMREVYSEMLDA-GCQPD-IVTYGIMVDSLCKTGRVEEAVLVVQDMSSRGCQP 274

Query: 288 TLKFFS----------------------------------NAL-DILVKLNDSTHAVQLW 312
           T   +S                                  NAL     K+    +A ++ 
Sbjct: 275 TTFIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDVVVYNALVTAFCKVKKFENAFRVM 334

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
           D M   HG  P+S T+N+I   LI   +  E  + F  MIK   QP        I M  +
Sbjct: 335 DDME-GHGIAPNSRTWNIILNKLISLGKDDEAYRVFRRMIK-RCQPDSDTYTMMIKMFCE 392

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
            D  E+A+++W Y+     LP   + + L+ GL + G +S      E+M+ + I     T
Sbjct: 393 NDNVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGST 452

Query: 433 MHKLKKAFYNESRSMRDIFDSLERRCK 459
             KL++    E R  +D+ + L  + K
Sbjct: 453 FGKLRQLLLKEGR--KDVLEFLVDKMK 477


>gi|326502308|dbj|BAJ95217.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 513

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 160/311 (51%), Gaps = 40/311 (12%)

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
           +F  M  +G+++D  A+NSLLSA+CR      +RA   + R +    PD DS+AILLEG 
Sbjct: 185 AFVEMPRYGMDRDTPALNSLLSALCRASRLDDARAAIPVARAEAGTRPDADSYAILLEGC 244

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ---VDEALKFLRVMKGEN 284
           E  GN   A + F EMV   +++P +V AY++FL TL+       + +A+++L V++   
Sbjct: 245 EAAGNAAVAREVFDEMVHALDFDPANVPAYDSFLTTLVSSGSSTALSDAMEYLAVLRRYR 304

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWD------------------IM----------- 315
           C P  KF   AL   ++  +   AV LWD                  IM           
Sbjct: 305 CSPGEKFLRAALAAYLEARELRSAVVLWDEFVLRRGLVPDKEMYTTMIMLQGTLGHAEVT 364

Query: 316 ------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
                 M  +G FPD+ TYN++ + L+K +++ E    F EM+KNE  P   NC+ A+ M
Sbjct: 365 VKYLDEMAIYGVFPDADTYNVVLKLLLKGRKLREASAIFKEMVKNECWPNEANCSLALGM 424

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
            LD  + +  I++W  +  N + PLE   N L+  L++   L +  ++AE+M+++ I + 
Sbjct: 425 FLDTRDWDTGIKVWKCMAANSLPPLEEGGNMLVSKLKD-EMLPEACKYAEDMIDQGIKLS 483

Query: 430 EVTMHKLKKAF 440
             T+ KLK + 
Sbjct: 484 SSTLTKLKHSL 494


>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
 gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
 gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
          Length = 489

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 212/447 (47%), Gaps = 46/447 (10%)

Query: 52  SARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQR- 110
           S R+   I++   +  +E  L  +G+  TP++   VL+   ++   A  FF WA + +R 
Sbjct: 41  SKRLCKLIISCRKASALEHELDHSGVRVTPEIAESVLKHLDNAGMLAYRFFEWARKQKRG 100

Query: 111 ---LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167
               +  +++ +V  L K  +++ MW+ V +M+++GV ++ TF  I   Y  A K DEAV
Sbjct: 101 VCAHTVRSYHTVVTSLAKIRQYQLMWDVVAIMRKEGVANVETFGIIMRKYARAQKLDEAV 160

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
            +F+VM  +GV  ++ A NSLLSA+C+ +N   +A E  +++     PD  +++ILLEGW
Sbjct: 161 YTFNVMEKYGVAHNLAAFNSLLSALCKSKN-VRKAQEIFDKMNNRFSPDAKTYSILLEGW 219

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            +  ++ +  + + +M+      P+ ++ Y   +  L +  +V+EA+  ++ M    C P
Sbjct: 220 GRAPSLPKMREVYSDMLAA-GCQPD-IVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQP 277

Query: 288 TLKFFS----------------------------------NAL-DILVKLNDSTHAVQLW 312
           T   +S                                  NAL     K+    +A ++ 
Sbjct: 278 TTFIYSILVHTYGVDMRIEDAVAAFLDMEKDGIMPDVVVYNALITAFCKVKKFENAFRVM 337

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
           D M   HG  P+S T+N+I   LI   +  E  + F  MIK   +P        I M  +
Sbjct: 338 DDMQ-GHGISPNSRTWNIILNTLISLGKDDEAYRVFRSMIK-RCKPDSDTYTMMIKMFCE 395

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
            D+ E+A+++W Y+     LP   + + L+ GL + G +S      E+M+ + I     T
Sbjct: 396 NDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGST 455

Query: 433 MHKLKKAFYNESRSMRDIFDSLERRCK 459
             KL++    E R  +D+ D L  + K
Sbjct: 456 FGKLRQLLLKEGR--KDVLDFLVEKMK 480


>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 217/471 (46%), Gaps = 44/471 (9%)

Query: 16  IIPSSSSTTTSPTSH---NPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESAL 72
           +IP+ + T+   T H   +  +  +    + +++  I+  A   C++++   +  IES L
Sbjct: 54  LIPNRNYTSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLL 113

Query: 73  ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYAWNLMVDVLGKNGRFE 130
               +  +P L+ EVL+   ++   A+ FFRWA   +G + +  ++NL+++ LGK  +F 
Sbjct: 114 DGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFN 173

Query: 131 QMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
            +WN V  MK  G+LS  TFA I   Y  A K  EAV SF+ M   G +  V   N LL 
Sbjct: 174 VIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLD 233

Query: 191 AICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
            +C+  N   +A E  +++K     PD  S+ ILLEGW ++ N+ + N+ + EM  R E 
Sbjct: 234 TLCKSRN-VKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREM--RDEG 290

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN-------------AL 296
               V+ +   +    + ++ DEA++    M+ +N  P+   F               AL
Sbjct: 291 FEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEAL 350

Query: 297 DILVKLNDSTHAVQ-----------LWDIMMVF----------HGAFPDSLTYNMIFECL 335
           +   +L  S  A +            W + M +           G  P+S TY++I   L
Sbjct: 351 EFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHL 410

Query: 336 IKNKRVHEVEKFFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           IK ++  E    F  M +    +PT       I M  + +  ++AI+IW+ +   G+LP 
Sbjct: 411 IKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPG 470

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
               + L+  L +  +L D   + +EML+  I         LK+A  ++ R
Sbjct: 471 MHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGR 521


>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 217/471 (46%), Gaps = 44/471 (9%)

Query: 16  IIPSSSSTTTSPTSH---NPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESAL 72
           +IP+ + T+   T H   +  +  +    + +++  I+  A   C++++   +  IES L
Sbjct: 54  LIPNRNYTSHRSTHHRIEHSKQDLKASQKSIVESDEIAQDAEKFCKLISKNPNSCIESLL 113

Query: 73  ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYAWNLMVDVLGKNGRFE 130
               +  +P L+ EVL+   ++   A+ FFRWA   +G + +  ++NL+++ LGK  +F 
Sbjct: 114 DGAPMELSPALIVEVLKKLSNAGFLALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFN 173

Query: 131 QMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
            +WN V  MK  G+LS  TFA I   Y  A K  EAV SF+ M   G +  V   N LL 
Sbjct: 174 VIWNLVSDMKRKGILSRETFALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLD 233

Query: 191 AICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
            +C+  N   +A E  +++K     PD  S+ ILLEGW ++ N+ + N+ + EM  R E 
Sbjct: 234 TLCKSRN-VKKAQEVFDKMKHGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREM--RDEG 290

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN-------------AL 296
               V+ +   +    + ++ DEA++    M+ +N  P+   F               AL
Sbjct: 291 FEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEAL 350

Query: 297 DILVKLNDSTHAVQ-----------LWDIMMVF----------HGAFPDSLTYNMIFECL 335
           +   +L  S  A +            W + M +           G  P+S TY++I   L
Sbjct: 351 EFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHL 410

Query: 336 IKNKRVHEVEKFFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           IK ++  E    F  M +    +PT       I M  + +  ++AI+IW+ +   G+LP 
Sbjct: 411 IKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPG 470

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
               + L+  L +  +L D   + +EML+  I         LK+A  ++ R
Sbjct: 471 MHLFSTLINSLCHEHKLEDACTYFQEMLDVGIRPPATMFSNLKQALLDDGR 521


>gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group]
 gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group]
 gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group]
          Length = 484

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 211/441 (47%), Gaps = 44/441 (9%)

Query: 52  SARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQR- 110
           + R+   I++   +  +E  L  +G+  TPD+   VL+   ++   A  FF WA R +R 
Sbjct: 36  AKRLFKLIISCRKASAVEHELDHSGVRVTPDVAERVLERLDNAGMLAYRFFEWARRQKRG 95

Query: 111 ---LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167
               +  +++ +V  L K  +++ MW+ V VM+ +G +++ TF  I   Y  A K DEAV
Sbjct: 96  GCAHTVRSYHTVVASLAKIRQYQLMWDVVAVMRREGAVNVETFGIIMRKYARAQKVDEAV 155

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
            +F+VM  +GV  ++ A NSLL A+C+ +N   +A E  +++     PD  +++ILLEGW
Sbjct: 156 YTFNVMEKYGVVPNLAAFNSLLGALCKSKN-VRKAQEIFDKMNSRFSPDAKTYSILLEGW 214

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            +  N+ +  + + EM++     P+ ++ Y   + +L +  +V+EA++ ++ M    C P
Sbjct: 215 GRAPNLPKMREVYSEMLDA-GCEPD-IVTYGIMVDSLCKTGRVEEAVRVVQDMTSRGCQP 272

Query: 288 TLKFFS---NALDILVKLNDSTHA------------VQLWDIM----------------- 315
           T   +S   +   + +++ D+               + +++ +                 
Sbjct: 273 TTYIYSVLVHTYGVEMRIEDAVATFLDMEKDGIVPDIVVYNALVSAFCKAKKFENAFRVL 332

Query: 316 --MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
             M  HG   +S T+N+I   LI   R  E  K F  MIK   QP        I M  + 
Sbjct: 333 NDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIKC-CQPDCDTYTMMIKMFCEN 391

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 433
           D+ E+A+++W Y+     LP   + + L+ GL +   +S      E+M+ + I     T 
Sbjct: 392 DKVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKREVSQACVLLEDMIEKGIRPPGSTF 451

Query: 434 HKLKKAFYNESRSMRDIFDSL 454
            KL++    E R  +D+ D L
Sbjct: 452 GKLRQLLLKEGR--KDVLDFL 470


>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 512

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/458 (27%), Positives = 210/458 (45%), Gaps = 45/458 (9%)

Query: 42  THLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDF 101
           T + A  +S  A  IC+IL+  +   +E+ L    +  +P L+ EVL+   ++   A+  
Sbjct: 57  TQVSANDVSQDADKICKILSKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSV 116

Query: 102 FRWA--GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159
           F+WA   +G + +   +N +++ LGK  +F+ +WN V  MK+  +LS  TFA I   Y  
Sbjct: 117 FKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWNLVDDMKQKKLLSKDTFALISRRYAR 176

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           A K  EA+ +F  M  +G + +    N +L  + +  N       F    KK  +PD  S
Sbjct: 177 ARKVKEAITAFHKMEDYGFKMESSDFNRMLDILSKSRNVGDAQKVFDKMKKKRFEPDIKS 236

Query: 220 FAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           + ILLEGW +E N+   N+ +GEM  E FE  P+ V+AY   +    + K+ DEA++F  
Sbjct: 237 YTILLEGWGQELNLLRVNEVYGEMKDEGFE--PD-VVAYGIIINAYCKAKKYDEAVRFFN 293

Query: 279 VMKGENCFPTLKFFS---NALDILVKLNDSTH---------------------AVQLWDI 314
            M+  NC P+   F    N L    KLND+                           W  
Sbjct: 294 EMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQ 353

Query: 315 MM--VF--------HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
            M   F         G  P++ TY++I   LI+ +R  E  + + +M     +PT     
Sbjct: 354 RMEDAFKTVDEMRSKGIGPNARTYDIILHHLIRMQRTKEAYEVYQKM---SCEPTVSTYE 410

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             + M  + +  ++AI+IW+ +   G+LP     + L+  L +  +L +   +  EML+ 
Sbjct: 411 IMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDV 470

Query: 425 RILIYEVTMHKLKKAFYNESR--SMRDIFDSLERRCKT 460
            I        +LK+   +E R   + D+   ++R  KT
Sbjct: 471 GIRPPGHLFSRLKQTLLDEGRKDKVADLAVKMDRLRKT 508


>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 208/443 (46%), Gaps = 48/443 (10%)

Query: 53  ARIICE-ILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL 111
           A+ +C+ I++   +  +E  L  + +  TPD+   VL+   ++   A  FF WA + +R 
Sbjct: 36  AKRLCKLIISCRQASGLEIELDHSDLRVTPDVAERVLERLDNAGMLAYRFFEWARKQRRG 95

Query: 112 SPYA-----WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
              A     ++ +V  L K  +++ MW+ V +M+  GV+++ TF  I   Y  A K DEA
Sbjct: 96  GGCAHTVRSFHTVVASLAKIRQYQLMWDVVAIMRRQGVVNVETFGIIMRKYARAQKVDEA 155

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           V +F+VM  +GV  ++ A NSLL A+C+ +N   +A E   ++     PD  +++ILLEG
Sbjct: 156 VYTFNVMEKYGVVPNLAAFNSLLCALCKSKN-VRKAQEIFEQMNGRFSPDAKTYSILLEG 214

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           W +  N+ +  K + +M++     P+ ++ Y   + +L +  +V+EA+  ++ M    C 
Sbjct: 215 WGRAPNLPKMRKVYSDMLDA-GCQPD-IVTYGIMVDSLCKTGRVEEAVFVVQDMTSRGCQ 272

Query: 287 PTLKFFS----------------------------------NAL-DILVKLNDSTHAVQL 311
           PT   +S                                  NAL     K+    +A ++
Sbjct: 273 PTTFIYSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDVVVYNALVTAFCKVKKFDNAFRV 332

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
            D M   HG  P+S T+N+I   LI   +  E  + F  MIK   QP        I M  
Sbjct: 333 MDDME-GHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIK-RCQPDSDTYTMMIKMFC 390

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 431
           + D  E+A+++W Y+     LP   + + L+ GL + G +S      E+M+ + I     
Sbjct: 391 ENDRLEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPPGS 450

Query: 432 TMHKLKKAFYNESRSMRDIFDSL 454
           T  KL++    E R  +D+ + L
Sbjct: 451 TFGKLRQLLLKEGR--KDVLEFL 471


>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
 gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 207/434 (47%), Gaps = 42/434 (9%)

Query: 60  LAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWN 117
           +  +S   +++AL  +G+  +  +V +VL+   ++   A  FF WA + +    S  A++
Sbjct: 1   MMSSSVVTLDTALDQSGVRVSEQIVEDVLKKFENAGMVAYRFFEWAEKQRHYNHSVKAFH 60

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
            ++D L K  +++ MW+ V+VMK   ++++ TF  I   Y  A K +EAV +F++M  + 
Sbjct: 61  TVIDSLAKIRQYQLMWDVVKVMKSKRMVNVETFCIIMRKYARAQKVEEAVYTFNIMDKYD 120

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           V  ++ A N LLSA+C+ +N   +A E  + +K    PD  +++ILLEGW K+ N+ +A 
Sbjct: 121 VPPNLAAFNGLLSALCKSKN-VRKAQEIFDSIKDRFVPDSKTYSILLEGWGKDPNLPKAR 179

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS---- 293
           + F EMV      P+ ++ Y   +  L +  +VDEAL  +  M    C PT   +S    
Sbjct: 180 EIFREMVSN-GCRPD-IVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVH 237

Query: 294 ---------NALDILVKLNDS----------------THAVQLWDIMMVFH-----GAFP 323
                    +A+   +++ ++                  A +L ++  V +     G  P
Sbjct: 238 TYGIENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTP 297

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           +S T+N+I   LI      E  + F  MIK   +P        I M  + DE + A+++W
Sbjct: 298 NSRTFNIILSSLIGRGETDEAYRVFLRMIK-VCEPDADTYTMMIKMFCERDELKKALKVW 356

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
            Y+     +P   +   L+ GL   G ++      EEM+ + I    VT  +L++    E
Sbjct: 357 KYMKLKRFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLLIKE 416

Query: 444 SRSMRDIFDSLERR 457
            R   D+   L+++
Sbjct: 417 GRE--DVLKFLQKK 428


>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
          Length = 540

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 204/466 (43%), Gaps = 41/466 (8%)

Query: 18  PSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGI 77
           P   +T  S +   P     P       AP +S +A  +C +++      I   L   G+
Sbjct: 57  PGFCTTVGSESDVEPRFTVVPGAAQEGLAPGVSEAAERVCRVVSAQPEHRIAPVLDALGV 116

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWNLMVDVLGKNGRFEQMWNA 135
             +P LV EVL+   ++   A+ FFRWA R Q  R S   ++ +++ LGK  +F  +W+ 
Sbjct: 117 TVSPQLVAEVLKNLSNAGILALAFFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSL 176

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           V  M+    LS  TF  I   Y  A K  EAV +F+ MS  G++ D+   N L+  I  +
Sbjct: 177 VEAMRCRSCLSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLID-ILSK 235

Query: 196 ENQTSRALEFLNRVKKIVD--PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
             Q  +A      +K+     PD  ++ +L+EGW  E ++      + EM++     P+ 
Sbjct: 236 SKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDA-GIKPD- 293

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS---NALDILVKLNDSTHAVQ 310
           V+AY   +    +  + DEA+K    M+   C P+   +    N L  + +L+++    Q
Sbjct: 294 VVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQ 353

Query: 311 L-------------------WDIMMVFHGAF------------PDSLTYNMIFECLIKNK 339
           L                   +   + FH AF            P++ TY++I   LIK++
Sbjct: 354 LSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSE 413

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           ++ E    F  M ++  +P        + M    +  ++A+++W  + E G+LP     +
Sbjct: 414 KIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFS 473

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            L+ GL    RL +   + +EML++ I         LK+A     R
Sbjct: 474 ALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGR 519



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 7/160 (4%)

Query: 90  LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLP 148
           L +      VD  R +G G     Y  +++++ L K+ + E+ +N  + M+ DG    L 
Sbjct: 378 LEFHHAFKMVDEMRKSGIGPNTRTY--DIILNHLIKSEKIEEAYNLFQRMERDGCEPELN 435

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  +   +C   + D A+  +  M   GV   +   ++L++ +C +       + F   
Sbjct: 436 TYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEM 495

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
           + K + P G  F+ L E   + G +  A     E+ +R E
Sbjct: 496 LDKGIRPPGQLFSNLKEALVEGGRITLAQ----EVTQRLE 531


>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
          Length = 540

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 204/466 (43%), Gaps = 41/466 (8%)

Query: 18  PSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGI 77
           P   +T  S +   P     P       AP +S +A  +C +++      I   L   G+
Sbjct: 57  PGFCTTVGSESDVEPRFTVVPGAAQEGLAPGVSEAAERVCRVVSAQPEHRIAPVLDALGV 116

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWNLMVDVLGKNGRFEQMWNA 135
             +P LV EVL+   ++   A+ FFRWA R Q  R S   ++ +++ LGK  +F  +W+ 
Sbjct: 117 TVSPQLVAEVLKNLSNAGILALAFFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSL 176

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           V  M+    LS  TF  I   Y  A K  EAV +F+ MS  G++ D+   N L+  I  +
Sbjct: 177 VEAMRCRSCLSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLID-ILSK 235

Query: 196 ENQTSRALEFLNRVKKIVD--PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
             Q  +A      +K+     PD  ++ +L+EGW  E ++      + EM++     P+ 
Sbjct: 236 SKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDA-GIKPD- 293

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS---NALDILVKLNDSTHAVQ 310
           V+AY   +    +  + DEA+K    M+   C P+   +    N L  + +L+++    Q
Sbjct: 294 VVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQ 353

Query: 311 L-------------------WDIMMVFHGAF------------PDSLTYNMIFECLIKNK 339
           L                   +   + FH AF            P++ TY++I   LIK++
Sbjct: 354 LSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSE 413

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           ++ E    F  M ++  +P        + M    +  ++A+++W  + E G+LP     +
Sbjct: 414 KIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFS 473

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            L+ GL    RL +   + +EML++ I         LK+A     R
Sbjct: 474 ALINGLCFDNRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGR 519



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 7/160 (4%)

Query: 90  LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLP 148
           L +      VD  R +G G     Y  +++++ L K+ + E+ +N  + M+ DG    L 
Sbjct: 378 LEFHHAFKMVDEMRKSGIGPNTRTY--DIILNHLIKSEKIEEAYNLFQRMERDGCEPELN 435

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  +   +C   + D A+  +  M   GV   +   ++L++ +C         + F   
Sbjct: 436 TYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEM 495

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
           + K + P G  F+ L E   + G +  A     E+ +R E
Sbjct: 496 LDKGIRPPGQLFSNLKEALVEGGRITLAQ----EVTQRLE 531


>gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 439

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 200/426 (46%), Gaps = 42/426 (9%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGK 125
           + +AL   GI  +P++V +VL+   ++   A  FF WA +      S  A++ M++ L K
Sbjct: 9   LHTALDQNGIRVSPEIVEDVLRRFENAGMVAYRFFEWAEKQLHYTHSVRAYHTMIESLAK 68

Query: 126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
             +++ MW+ +  MK   +L++ TF  I   Y  A K +EAV +F+VM  + V  ++ A 
Sbjct: 69  IRQYQIMWDLINAMKRKRMLNVETFCIIMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAF 128

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           N L SA+C+ +N   +A E  +  K    PD  ++ ILLEGW K  N+ +A + F EMV+
Sbjct: 129 NGLFSALCKSKN-VRKAQEIFDSSKDRFVPDSKTYTILLEGWGKTPNLPKAREIFREMVD 187

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS------------ 293
               +P+ ++ Y   +  L +  +VDEAL  ++ M    C PT   +S            
Sbjct: 188 -VGCSPD-IVTYGIMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGIENRI 245

Query: 294 -NALDILVKL--NDSTHAVQLWDIM-------------------MVFHGAFPDSLTYNMI 331
            +A+D  + +  N     V  ++ +                   M + G  P+S T N+I
Sbjct: 246 EDAVDTFLGMEKNGVKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNII 305

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
              LI      E  + F  MIK   +P        I M  + +E E+A+++W Y+ +   
Sbjct: 306 LNNLIARGETDEAFRVFRRMIK-VCEPDADTYTMMIKMFCERNELEMALKVWKYMKKKHF 364

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIF 451
           +P   + + L+ GL   G +S      E+M+ + I    VT  +L+     E R   D+ 
Sbjct: 365 VPSMHTFSVLINGLCEEGDVSHACVMLEDMIEKGIRPSGVTFGRLRHLLIKEGRE--DVL 422

Query: 452 DSLERR 457
           + L+++
Sbjct: 423 EFLQQK 428


>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 197/437 (45%), Gaps = 43/437 (9%)

Query: 48  YISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA-- 105
           +I+     +C++L   S+  IES L    +  +P LV EVL+   +S   A+ FFRWA  
Sbjct: 78  HIAQDTGKLCKLLCTHSNSSIESLLNGASVDVSPTLVLEVLKKLSNSGVIALSFFRWAEK 137

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
            +G + S   +N +++ LGK  +F+ +WN V  M+  G+L+  TFA I   Y  A K  E
Sbjct: 138 QKGFKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKGLLTQETFALISRRYARARKVKE 197

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           AV +F+ M   G++  +   N LL A+C+  +   RA E  +++K +   PD  S+ ILL
Sbjct: 198 AVETFEKMEKFGLQPVLSDFNRLLDALCKSRH-VERAQEVFDKMKDRKFRPDIKSYTILL 256

Query: 225 EGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           EGW +E N+   ++ + EM  E FE  P+ V  Y   +    + ++ D A++    M+  
Sbjct: 257 EGWGQEQNLLRLDEVYREMKDEGFE--PDAV-TYGILINAHCKARRYDAAVELFHKMEAN 313

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIM---------------------------- 315
            C PT   +   ++ L      T A+Q ++                              
Sbjct: 314 KCMPTPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDA 373

Query: 316 ------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE-WQPTPLNCATAIT 368
                 M   G  P + TY++I   LIK +R  E  + F  M      +P+       + 
Sbjct: 374 YRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIVVR 433

Query: 369 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 428
           M  + +  ++A+ +W+ +   G+LP     + L+  L    +L +  ++  EML+  I  
Sbjct: 434 MFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDMGIRP 493

Query: 429 YEVTMHKLKKAFYNESR 445
                  LK+   +E +
Sbjct: 494 PAAMFSNLKQTLLDEGK 510


>gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 482

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 200/433 (46%), Gaps = 40/433 (9%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           ++  A+ I ++L  +    I+SAL  +G+  +P++V +VL    ++   A  FF+W+ + 
Sbjct: 33  VADVAKNISKVLMSSPQLVIDSALDQSGLRVSPEVVEDVLYRFRNAGLLAYRFFQWSEKQ 92

Query: 109 QRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +    S  A+++M++   K  +++ MW+ +  M +  +L++ TF  +   Y  A K DEA
Sbjct: 93  RHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMMKKKMLNVETFCIVMRKYARAQKVDEA 152

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           + +F+VM  + +  ++VA N LLSA+C+ +N   +A E    ++    PD  +++ILLEG
Sbjct: 153 IYAFNVMEKYDLPPNLVAFNGLLSALCKSKN-VRKAQEIFENMRDRFTPDSKTYSILLEG 211

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           W KE N+ +A + F EMV+    +   ++ Y   +  L +  +VDEAL  +R M    C 
Sbjct: 212 WGKEPNLPKAREVFREMVD--AGSLPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICK 269

Query: 287 PTLKFFS-------------NALDILVKLNDS-------------------THAVQLWDI 314
           PT   +S              A+D  +++  S                        ++ +
Sbjct: 270 PTTFIYSVLVHTYGTETRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKTNRMKNVYRV 329

Query: 315 M--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
           +  M   G  P+S + N+I   LI      E    F +MIK   +P        I M  +
Sbjct: 330 LKEMKSKGVTPNSKSCNIILRHLIDRGEKDEAFDVFRKMIK-VCEPDADTYTMMIKMFCE 388

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
             E E A ++W Y+ + G+ P   + + L+ GL             EEM+   I     T
Sbjct: 389 KKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEEPNTQKACVLLEEMIEMGIRPSGAT 448

Query: 433 MHKLKKAFYNESR 445
             +L++    E R
Sbjct: 449 FGRLRQLLLKEDR 461



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 127/317 (40%), Gaps = 43/317 (13%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           R +P    ++++++  GK     +     R M + G L  + T++ + D  C AG+ DEA
Sbjct: 197 RFTPDSKTYSILLEGWGKEPNLPKAREVFREMVDAGSLPDIVTYSIMVDILCKAGRVDEA 256

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +         G+      V S+  +IC+                    P    +++L+  
Sbjct: 257 L---------GI------VRSMDPSICK--------------------PTTFIYSVLVHT 281

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           +  E  +EEA  TF EM ER     + V  + + +    +  ++    + L+ MK +   
Sbjct: 282 YGTETRLEEAVDTFLEM-ERSGMKAD-VAVFNSLIGAFCKTNRMKNVYRVLKEMKSKGVT 339

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P  K  +  L  L+   +   A  ++  M+      PD+ TY M+ +   + K +   +K
Sbjct: 340 PNSKSCNIILRHLIDRGEKDEAFDVFRKMI--KVCEPDADTYTMMIKMFCEKKEMETADK 397

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            +  M K    P+    +  I  L +    + A  +   ++E GI P  A+   L   L 
Sbjct: 398 VWKYMRKKGVFPSMHTFSVLINGLCEEPNTQKACVLLEEMIEMGIRPSGATFGRLRQLLL 457

Query: 407 NLGRLSDVRRFAEEMLN 423
              R  DV +F  E +N
Sbjct: 458 KEDR-EDVLKFLNEKMN 473


>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Brachypodium distachyon]
          Length = 547

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/445 (26%), Positives = 205/445 (46%), Gaps = 45/445 (10%)

Query: 42  THLDAPY--ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAV 99
           T  D P   +S  A  +C +++      I SAL   G+  +P+LV EVL+   ++   A+
Sbjct: 86  TDGDGPGSDVSEVAERVCRVVSSQPEPRIASALDALGVNMSPELVAEVLRNLSNAGILAL 145

Query: 100 DFFRWAGRGQ--RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY 157
            FFRWA R Q  R +  +++ +++ LGK  +F  +W+ V  M+  G+LS  TF  I   Y
Sbjct: 146 AFFRWAERQQGFRYTAESFHNLIEALGKIKQFRLVWSLVEAMRCRGLLSKDTFRLIVRRY 205

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDP 215
             A K  EAV +F+ MS  G++ D+   N L+  + + + Q  +A      +K+     P
Sbjct: 206 ARARKVKEAVETFEKMSSFGLKADLSDYNWLIDVLSKSK-QVKKAHAIFKEMKRNGRFVP 264

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D  ++ +L+EGW  E ++      + EM++     P+ V+AY T + +  +  + DEA+K
Sbjct: 265 DLKTYTVLMEGWGHEKDLLMLKSVYQEMLDA-GIKPD-VVAYGTLISSFCKSGKCDEAIK 322

Query: 276 FLRVMKGENCFPT--------------------LKFF--------------SNA-LDILV 300
             R M+   C P+                    LK+F               NA +    
Sbjct: 323 VFREMEANGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYC 382

Query: 301 KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
           + +   HA ++ D M    G  P++ TY++I + LIK++++ E    F  M     +P  
Sbjct: 383 RSSKFQHAFKMVDEMRK-TGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQL 441

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 420
                 + M    +  ++A+++W  + E G+LP     + L+ GL    RL +   + +E
Sbjct: 442 NTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQE 501

Query: 421 MLNRRILIYEVTMHKLKKAFYNESR 445
           ML++ I         LK+A     R
Sbjct: 502 MLDKGIRPPGQLFSNLKEALIEGGR 526


>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
 gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 439

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 200/426 (46%), Gaps = 42/426 (9%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGK 125
           +E+AL  TGI  +P++   VL+   ++   A  FF WA + +    S  A++ M++ L K
Sbjct: 9   LETALDQTGIRISPEIAEPVLRRFENAGMLAYRFFEWASKQRNYVHSVRAYHSMIESLAK 68

Query: 126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
             +++ +W+ V  M+   +L++  F  I   Y  A K +EAV +F+VM  + ++ +V A 
Sbjct: 69  IRQYQMVWDLVNAMRNKEILNVEAFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAF 128

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           N LLSA+C+ +N   +A E  + +K    PD  +++IL+EGW +  N+ +A + + EM++
Sbjct: 129 NGLLSALCKSKN-VRKAQEIFDNMKDQFVPDSKTYSILIEGWGRAPNLPKAREIYREMID 187

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS------------ 293
                P+ V  Y   +  L +  +VDEA++ ++ M   NC P+   +S            
Sbjct: 188 S-GCIPDEV-TYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRI 245

Query: 294 -NALDILVKL--NDSTHAVQLWDIM-------------------MVFHGAFPDSLTYNMI 331
            +A+   +++  N     V  ++ +                   M   G  P+S T N+I
Sbjct: 246 EDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNII 305

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
              LI      E  K F  MIK   +P   +    I M     E ++A++IW Y+ +   
Sbjct: 306 INSLIGRGETDEAFKIFRRMIK-VCEPDVDSYTMIIKMFCGRKELDMALKIWKYMKKKQF 364

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIF 451
           +P   + + L+ GL  +G  +      EEM+ + I     T  +L+     E R  +D+ 
Sbjct: 365 VPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHLLIKEGR--KDVL 422

Query: 452 DSLERR 457
             L+ +
Sbjct: 423 KFLQEK 428



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 128/313 (40%), Gaps = 13/313 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           A+N ++  L K+    +       MK+  V    T++ + + +  A    +A   +  M 
Sbjct: 127 AFNGLLSALCKSKNVRKAQEIFDNMKDQFVPDSKTYSILIEGWGRAPNLPKAREIYREMI 186

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDSFAILLEGWEKE 230
             G   D V  + ++  +C+      R  E +  VK++      P    +++L+  +  E
Sbjct: 187 DSGCIPDEVTYSIMVDVLCK----AGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVE 242

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             +E+A  TF EM ER     + V AY   +    +  ++    + L+ M  +   P  +
Sbjct: 243 NRIEDAVSTFLEM-ERNGVMAD-VAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSR 300

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
             +  ++ L+   ++  A +++  M+      PD  +Y MI +     K +    K +  
Sbjct: 301 TCNIIINSLIGRGETDEAFKIFRRMI--KVCEPDVDSYTMIIKMFCGRKELDMALKIWKY 358

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M K ++ P+    +  I  L        A  +   ++E GI P  A+   L   L   GR
Sbjct: 359 MKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHLLIKEGR 418

Query: 411 LSDVRRFAEEMLN 423
             DV +F +E +N
Sbjct: 419 -KDVLKFLQEKMN 430


>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
          Length = 481

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 204/433 (47%), Gaps = 40/433 (9%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           ++  A+ I ++L  +    ++SAL  +G+  + ++V +VL    ++      FF+W+ + 
Sbjct: 32  VADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEKQ 91

Query: 109 QRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +    S  A+++M++   K  +++ MW+ +  M++  +L++ TF  +   Y  A K DEA
Sbjct: 92  RHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDEA 151

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           + +F+VM  + +  ++VA N LLSA+C+ +N   +A E    ++    PD  +++ILLEG
Sbjct: 152 IYAFNVMEKYDLPPNLVAFNGLLSALCKSKN-VRKAQEVFENMRDRFTPDSKTYSILLEG 210

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           W KE N+ +A + F EM++    +P+ ++ Y   +  L +  +VDEAL  +R M    C 
Sbjct: 211 WGKEPNLPKAREVFREMIDA-GCHPD-IVTYSIMVDILCKAGRVDEALGIVRSMDPSICK 268

Query: 287 PTLKFFS-------------NALDILVKLNDS----------------THAVQLWDIMMV 317
           PT   +S              A+D  +++  S                  A ++ ++  V
Sbjct: 269 PTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRV 328

Query: 318 F-----HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
                  G  P+S + N+I   LI+     E    F +MIK   +P        I M  +
Sbjct: 329 LKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIK-VCEPDADTYTMVIKMFCE 387

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
             E E A ++W Y+ + G+ P   + + L+ GL             EEM+   I    VT
Sbjct: 388 KKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVT 447

Query: 433 MHKLKKAFYNESR 445
             +L++    E R
Sbjct: 448 FGRLRQLLIKEER 460



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 125/313 (39%), Gaps = 13/313 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           A+N ++  L K+    +       M++       T++ + + +       +A   F  M 
Sbjct: 169 AFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMI 228

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK----IVDPDGDSFAILLEGWEKE 230
             G   D+V  + ++  +C+      R  E L  V+     I  P    +++L+  +  E
Sbjct: 229 DAGCHPDIVTYSIMVDILCK----AGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTE 284

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             +EEA  TF EM ER     + V  + + +    +  ++    + L+ MK +   P  K
Sbjct: 285 NRLEEAVDTFLEM-ERSGMKAD-VAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSK 342

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
             +  L  L++  +   A  ++  M+      PD+ TY M+ +   + K +   +K +  
Sbjct: 343 SCNIILRHLIERGEKDEAFDVFRKMI--KVCEPDADTYTMVIKMFCEKKEMETADKVWKY 400

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M K    P+    +  I  L +    + A  +   ++E GI P   +   L   L    R
Sbjct: 401 MRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEER 460

Query: 411 LSDVRRFAEEMLN 423
             DV +F  E +N
Sbjct: 461 -EDVLKFLNEKMN 472


>gi|242064592|ref|XP_002453585.1| hypothetical protein SORBIDRAFT_04g008520 [Sorghum bicolor]
 gi|241933416|gb|EES06561.1| hypothetical protein SORBIDRAFT_04g008520 [Sorghum bicolor]
          Length = 436

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 138/480 (28%), Positives = 213/480 (44%), Gaps = 96/480 (20%)

Query: 25  TSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGI--IPTPD 82
            S  +     P+ P FPT+ +A  +    RI  +ILA  + DD+++AL    I  + T D
Sbjct: 2   ASSAAKRARDPSSPAFPTNKEASELPHKTRIFYDILASRADDDMDAALDEADIRGVTTAD 61

Query: 83  LVHEVLQLSYDSPSSAVDFF----RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV 138
            V +VL LSY  P +A  FF     W       SPY+WNL+VD+LG N  F ++      
Sbjct: 62  -VEQVLHLSYAHPHAAAAFFHWAGHWHLGHDNHSPYSWNLVVDILGANRLFTRI------ 114

Query: 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN- 197
               G   L  F                    D M  +G+ +D+ A+NS LSA+CR +  
Sbjct: 115 ---PGCSPLKAF-------------------MDDMPRYGMARDMSALNSFLSALCRADRL 152

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             +RA   +   +     D DS+AILLE  E   +   A     EMV      P+++ AY
Sbjct: 153 DDARAAIPVAHAEAGTLLDADSYAILLECCEAAADTRGARDVCDEMVHDIGVGPDNMPAY 212

Query: 258 ETFLITLIRGKQ---VDEALKFLRVMKGENCFPTL--KFFSNALDILVKLNDSTHAVQLW 312
           E FL  L+       + EA+ +L  +   +C P    +FF   + + ++  +   A  LW
Sbjct: 213 EAFLAMLVSSNSSMALLEAMYYLDFLNKRSCSPGAGERFFCAVVAVHLEAGELRGATYLW 272

Query: 313 D------------------IM-----------------MVFHGAFPDSLTYNMIFECLIK 337
           D                  IM                 M+F+G  PD+ TYN+    L++
Sbjct: 273 DKFVGRRGLVPDMEMYNTMIMLQGSLGHVEVIVDYLDDMIFNGLVPDTNTYNVFLLILLE 332

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
            + +H+    F EM+KNE  P   NC+ A+ + LDA   E  I IW+ ++ENG+ PLE  
Sbjct: 333 RRELHKAATIFSEMVKNECWPNEGNCSLALRLFLDARYWETGIRIWSCVVENGLPPLEEC 392

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 457
            N L+  L++           +++ +  +   ++ M K+KK         RDI+D L R+
Sbjct: 393 GNMLVSKLKD-----------DKLSSSTLSKLKLCMQKIKK---------RDIYDDLLRK 432


>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g77360, mitochondrial; Flags: Precursor
 gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 204/433 (47%), Gaps = 40/433 (9%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           ++  A+ I ++L  +    ++SAL  +G+  + ++V +VL    ++      FF+W+ + 
Sbjct: 68  VADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEKQ 127

Query: 109 QRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +    S  A+++M++   K  +++ MW+ +  M++  +L++ TF  +   Y  A K DEA
Sbjct: 128 RHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDEA 187

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           + +F+VM  + +  ++VA N LLSA+C+ +N   +A E    ++    PD  +++ILLEG
Sbjct: 188 IYAFNVMEKYDLPPNLVAFNGLLSALCKSKN-VRKAQEVFENMRDRFTPDSKTYSILLEG 246

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           W KE N+ +A + F EM++    +P+ ++ Y   +  L +  +VDEAL  +R M    C 
Sbjct: 247 WGKEPNLPKAREVFREMIDA-GCHPD-IVTYSIMVDILCKAGRVDEALGIVRSMDPSICK 304

Query: 287 PTLKFFS-------------NALDILVKLNDS----------------THAVQLWDIMMV 317
           PT   +S              A+D  +++  S                  A ++ ++  V
Sbjct: 305 PTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRV 364

Query: 318 F-----HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
                  G  P+S + N+I   LI+     E    F +MIK   +P        I M  +
Sbjct: 365 LKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIK-VCEPDADTYTMVIKMFCE 423

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
             E E A ++W Y+ + G+ P   + + L+ GL             EEM+   I    VT
Sbjct: 424 KKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVT 483

Query: 433 MHKLKKAFYNESR 445
             +L++    E R
Sbjct: 484 FGRLRQLLIKEER 496



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 125/313 (39%), Gaps = 13/313 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           A+N ++  L K+    +       M++       T++ + + +       +A   F  M 
Sbjct: 205 AFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMI 264

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK----IVDPDGDSFAILLEGWEKE 230
             G   D+V  + ++  +C+      R  E L  V+     I  P    +++L+  +  E
Sbjct: 265 DAGCHPDIVTYSIMVDILCK----AGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTE 320

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             +EEA  TF EM ER     + V  + + +    +  ++    + L+ MK +   P  K
Sbjct: 321 NRLEEAVDTFLEM-ERSGMKAD-VAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSK 378

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
             +  L  L++  +   A  ++  M+      PD+ TY M+ +   + K +   +K +  
Sbjct: 379 SCNIILRHLIERGEKDEAFDVFRKMI--KVCEPDADTYTMVIKMFCEKKEMETADKVWKY 436

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M K    P+    +  I  L +    + A  +   ++E GI P   +   L   L    R
Sbjct: 437 MRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEER 496

Query: 411 LSDVRRFAEEMLN 423
             DV +F  E +N
Sbjct: 497 -EDVLKFLNEKMN 508


>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 565

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 200/436 (45%), Gaps = 43/436 (9%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           +S  A  +C +L+      + +AL   G   +P LV EVL+   ++   A+ FFRWA R 
Sbjct: 113 VSEEAERVCRVLSTLPEPRVPAALDALGASVSPQLVAEVLKNLSNAGILALAFFRWAERQ 172

Query: 109 QRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           Q    +  +++ +++ LGK  +F  +W+ V  M+  G+LS  TF  I   Y  A K  EA
Sbjct: 173 QGFVYTADSFHNLIEALGKIKQFRLVWSLVEAMRCRGLLSKDTFRLIVRRYARARKVKEA 232

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILL 224
           V +F+ M+  G++ D+   N L+  + + + Q  +A      +K+     PD  ++ +L+
Sbjct: 233 VETFEKMAGFGLKADLSDYNWLIDVLSKSK-QVKKAHAIFKEMKRNGRFVPDLKTYTVLM 291

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           EGW  E ++      + EM++     P+ V+AY   + +  +  + DEA+K  R M+   
Sbjct: 292 EGWGHEKDLLMLKSVYQEMLDA-GLQPD-VVAYGMLISSFCKSGKCDEAIKVFREMETNG 349

Query: 285 CFPT--------------------LKFF--------------SNA-LDILVKLNDSTHAV 309
           C P+                    LK+F               NA +    + +   HA 
Sbjct: 350 CMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAF 409

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           ++ D M    G  P+S TY++I   LIK++++ E    F  M K+  +P        + M
Sbjct: 410 KMVDEMRK-SGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNTYTMMVGM 468

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
               +  ++A+++WN + E G+LP     + L+ GL    RL +   + +EML+R I   
Sbjct: 469 FCSNERVDVALKVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQEMLDRGIRPP 528

Query: 430 EVTMHKLKKAFYNESR 445
                 LK+A     R
Sbjct: 529 GQLFSNLKEALIEGGR 544


>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 201/436 (46%), Gaps = 43/436 (9%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--G 106
           I    R IC +L+   +  IE  L       +P LV EVL+   ++ + A+ FF+WA   
Sbjct: 81  IIEDTRNICRLLSKNPNSSIEKLLLGASFKVSPALVLEVLKRLSNAGALALSFFKWAEKQ 140

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +G   +  ++N ++D LGK  +F  +WN V  MK  GVL+  TFA I   Y  +GK  EA
Sbjct: 141 KGFMYNTESYNALIDSLGKIKQFNMIWNLVNDMKRKGVLTKETFALISRRYARSGKVKEA 200

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLE 225
           + +F+ M   G++ +    N LL  + +     S    F   ++++ V PD  S+ ILLE
Sbjct: 201 MNTFEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFV-PDIKSYTILLE 259

Query: 226 GWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           GW +E N+ + ++ + EM  E FE  P+ V+ Y   +    + ++ D+A++  R M+ +N
Sbjct: 260 GWGQEKNLLKLDEVYREMKDEGFE--PD-VVTYGILINAYCKVRKYDDAIELFREMESKN 316

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQL------------------------WDIM----- 315
           C P+   F   ++ L  +   + A++                         W +      
Sbjct: 317 CQPSPHIFCTLINGLGSVRRLSEALEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAY 376

Query: 316 -----MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI-KNEWQPTPLNCATAITM 369
                M   G  P+S TY++I   LIK ++  E    F +M  + E +PT       + M
Sbjct: 377 RMVDEMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRM 436

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
             + D+ E AI++W+ +   G+ P     + L+  L +  +L    ++ +EML+  I   
Sbjct: 437 FCNMDKVESAIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDVGIRPP 496

Query: 430 EVTMHKLKKAFYNESR 445
                 LK+A   + R
Sbjct: 497 AALFSHLKQALIEDGR 512


>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Vitis vinifera]
          Length = 624

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 189/400 (47%), Gaps = 14/400 (3%)

Query: 23  TTTSPTSHNPH---RPTRPRFPTHLDAP-YISSSARIICEILAHASSDDIESALACTGII 78
           + +SP +H+       T  + P  L +  YI+  +RI+ +        D+E  L      
Sbjct: 20  SLSSPKTHHSRLFSSQTILQDPNSLSSSQYINEISRILSDF--RDPHHDLERPLTAFSQK 77

Query: 79  PTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAV 136
            TP LV +VL+   +   SA  FF WA R  G   S  +++++VD+LG + +F  +W+ +
Sbjct: 78  ITPGLVEQVLKRCKNLGFSAHRFFLWAKRLPGFEHSKESYHILVDILGSSKQFPLIWDFL 137

Query: 137 RVMKEDGVLSL--PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
             M+E     +    F  IF +YC A    +A+ +F  M   GV+  V  V+ LL  +C+
Sbjct: 138 SDMRETRCCEICPEIFWLIFRAYCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCK 197

Query: 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
           +++   +A EF ++V   V P+  +++IL+ GW   G+  EA K F EM ER       V
Sbjct: 198 RKH-VKQAQEFFDKVNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMRER--GCAVDV 254

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           +AY + L  L +G  VDEA K  R M      P    +S  +    ++ND   A Q+ D 
Sbjct: 255 VAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDR 314

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
           M  ++   P+  TYN I + L K+++V E  +   EMI+    P   +         D  
Sbjct: 315 MRRYN-LVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHC 373

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
           E   A+ + + + +   +P   + N +L  L  +GR   V
Sbjct: 374 EVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRV 413



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 107/223 (47%), Gaps = 7/223 (3%)

Query: 139 MKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M+E G  + +  + S+ ++ C  G  DEA   F  M  +G+  D  + +  + A C + N
Sbjct: 245 MRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYC-EVN 303

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
               A + L+R+++  + P+  ++  +++   K   V+EA +   EM+ER   +P+ + +
Sbjct: 304 DIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIER-GVSPD-LWS 361

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           Y           +V++AL+ +  M+ ENC P    ++  L +L+++        +W  M 
Sbjct: 362 YNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGME 421

Query: 317 VFHGAFPDSLTYNMIFECLIKNK-RVHEVEKFFHEMIKNEWQP 358
              G +P + TY ++     K K ++ E  K+F  MI +   P
Sbjct: 422 E-RGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGIPP 463



 Score = 45.1 bits (105), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 2/169 (1%)

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
           +  L  L + K V +A +F   +  E   P  K +S  +     + DS+ A +L++ M  
Sbjct: 189 DQLLYVLCKRKHVKQAQEFFDKVNVE-VMPNAKTYSILMRGWGDVGDSSEARKLFEEMRE 247

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
             G   D + YN + E L K   V E  K F EM  N   P   + +  I    + ++  
Sbjct: 248 -RGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIH 306

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            A ++ + +    ++P   + N ++  L    ++ +  +  +EM+ R +
Sbjct: 307 SAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGV 355


>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
 gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
 gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
          Length = 547

 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 118/467 (25%), Positives = 206/467 (44%), Gaps = 45/467 (9%)

Query: 20  SSSTTTSPTSHNPHRPTRPRFPTHLDAPYI--SSSARIICEILAHASSDDIESALACTGI 77
           +  +T    S  P R T        D P +  S +A+++C I++      I S L   G+
Sbjct: 64  ARQSTDERASAEPLRFTVTPGDAFGDGPPVGMSEAAKMVCRIVSTQPEPKIASTLDALGV 123

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNA 135
             +P+LV EVL+   ++   A+ FFRWA R +  S  A  ++ +++ LGK  +F  +W+ 
Sbjct: 124 AVSPELVAEVLKNLSNAGMLALAFFRWAERQEGFSYTAEGFHNLIEALGKIKQFRLVWSL 183

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI--C 193
           V  M+  G+LS  TF  I   Y  A K  EAV +F+ MS+ G++ ++   N L+  +   
Sbjct: 184 VETMRCRGLLSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTELSDYNWLIDTLSKS 243

Query: 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           +Q  +     + + R  K V PD  ++ +L+EGW  E ++      + EM++     P+ 
Sbjct: 244 KQVKKAQAIYKEMKRKGKFV-PDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDA-GIRPD- 300

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT--------------------LKFFS 293
           V+AY   +    +  + DEA+K    M+   C P+                    LK+F 
Sbjct: 301 VVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEALKYFE 360

Query: 294 N---------------ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
           +                +    + +   HA ++ D M       P+S TY++I   LIK+
Sbjct: 361 HYKKSGFPMEVPTCNAVVGAYCRASKFQHAFKMVDEMRKCK-VGPNSRTYDVILHYLIKS 419

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
           ++  E    F  M  +  +P        + M       ++A+++W  + E G+LP     
Sbjct: 420 QKFEEAYNIFQRMGIDGCEPQLNTYTMMVGMFCSNGRVDMALKVWKQMGEKGVLPCMHMF 479

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           + L+ GL    RL +   + +EML++ I         LK+A     R
Sbjct: 480 SALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVQGGR 526



 Score = 42.0 bits (97), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 1/125 (0%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +++++  L K+ +FE+ +N  + M  DG    L T+  +   +C  G+ D A+  +  M 
Sbjct: 409 YDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYTMMVGMFCSNGRVDMALKVWKQMG 468

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             GV   +   ++L++ +C +       + F   + K + P G  F+ L E   + G + 
Sbjct: 469 EKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVQGGRIS 528

Query: 235 EANKT 239
            A + 
Sbjct: 529 LAQEV 533


>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
 gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
          Length = 551

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 196/436 (44%), Gaps = 43/436 (9%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           IS +A+++C I++      I S L   G+  +P+LV EVL+   ++   A+ FFRWA R 
Sbjct: 99  ISEAAKMVCRIVSTQPEPRIASTLDALGVAMSPELVAEVLKNLSNAGMLALAFFRWAERQ 158

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +  S  A  ++ +++ LGK  +F+ +W+ V  M+  G+LS  TF  I   Y  A K  EA
Sbjct: 159 EGFSYTAEGFHNLIEALGKIKQFKLVWSLVETMRCRGLLSKDTFKLIVRRYARARKVKEA 218

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAI--CRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           V +F+ MS+ G++ ++   N L+  +   +Q  +     + + R  K V PD  ++ +L+
Sbjct: 219 VETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKAQAIYKEMKRKGKFV-PDLKTYTVLM 277

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           EGW  E ++      + EM++     P+ V+AY   +    +  + DEA+K    M+   
Sbjct: 278 EGWGHEKDLLMVKTMYQEMIDA-GIRPD-VVAYGMLISAFCKSGKCDEAIKVFYEMEASG 335

Query: 285 CFPT--------------------LKFFSN---------------ALDILVKLNDSTHAV 309
           C P+                    LK+F                  +    + +   HA 
Sbjct: 336 CMPSPHVYCMLINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAF 395

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           ++ D M       P+S TY++I   LIK+++  E    F  M  +  +P        + M
Sbjct: 396 KMVDEMRECKIG-PNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGM 454

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
                  ++A+ +W  + E G+LP     + L+ GL    RL +   + +EML++ I   
Sbjct: 455 FCSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPP 514

Query: 430 EVTMHKLKKAFYNESR 445
                 LK+A     R
Sbjct: 515 GQLFSNLKEALVEGGR 530



 Score = 42.0 bits (97), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 1/124 (0%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +++++  L K+ +FE+ +N  + M  DG    L T+  +   +C  G+ D A+  +  M 
Sbjct: 413 YDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVDMALNVWKQMG 472

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             GV   +   ++L++ +C +       + F   + K + P G  F+ L E   + G + 
Sbjct: 473 ERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRIS 532

Query: 235 EANK 238
            A +
Sbjct: 533 LAQE 536


>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial [Vitis vinifera]
          Length = 535

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 201/443 (45%), Gaps = 42/443 (9%)

Query: 29  SHNPHRPTRPRFPTHLDAPYISSSARIICEILA--HASSDDIESALACTGIIPTPDLVHE 86
           + N     R +   ++    I S    I E+L   H+S+D +  AL   G+  +  LV +
Sbjct: 65  AENQKHDHRSKVDGYVLKETIDSDIDKISELLKFRHSSADAVVQALGGCGVSVSESLVEQ 124

Query: 87  VLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDG 143
           VL+   +    A  FF+WA    G R S  ++N MVD+LGK  +F+ MW  V  M +  G
Sbjct: 125 VLKRFSNDWIPAFGFFKWAKAQTGYRHSMNSYNSMVDILGKLKKFDLMWELVEEMDRLGG 184

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
            +SL T   +      A ++ +A+ +F  M   GV++D +A+N+L+ A+ + EN    A 
Sbjct: 185 YVSLATMTKVMRRLARASRWKDAIEAFRGMERFGVKKDTLAMNTLMDALVK-ENSVEHAN 243

Query: 204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM---------------VERF- 247
           +     K  +  +  +F +L+ GW K   ++ A K+  EM               VE + 
Sbjct: 244 DVFVEFKDSILLNPHTFNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYC 303

Query: 248 -----------------EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
                            +  P +V+ Y   +  L +GK++ +AL+    MKG +C P   
Sbjct: 304 REKDFRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTS 363

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
           F+S+ + IL K      A  +++  M   GA PD LTYN +      + +  +  K   +
Sbjct: 364 FYSSLIYILSKAGRLKDARDVFED-MTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLK 422

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV-GLRNLG 409
           M ++  +P     +  + M    +  ++   + N++ +N I  LE     LLV GL   G
Sbjct: 423 MEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDI-SLEVGTYSLLVHGLCKSG 481

Query: 410 RLSDVRRFAEEMLNRRILIYEVT 432
           +L     F EEM+++ ++  + T
Sbjct: 482 KLEHACLFFEEMVSKGLVPKDCT 504


>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 547

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 201/441 (45%), Gaps = 51/441 (11%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--G 106
           +   A  IC +L+  S    +  L    I  +P LV EVL+   ++   A+ FF WA   
Sbjct: 91  LEQDAARICTLLSTHSGSHADKLLEDASIKVSPSLVVEVLKRLSNAGVIALSFFTWAEKQ 150

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +G + +  ++N +++ LGK  +F+ + + V  MK   +L+  TFA I   +  A K +EA
Sbjct: 151 KGFKYNTESYNALIEALGKIKQFKLIRSLVNEMKSRKLLNKDTFALISRRHARARKVEEA 210

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-----KKIVDPDGDSFA 221
           + +F+ M   G + +    N LL  +C+     SR +E  N+V     K+   PD  S+ 
Sbjct: 211 IEAFERMEEFGFKLETSDFNRLLDTLCK-----SRHVEKANKVFDKMKKRRFVPDIKSYT 265

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           ILLEGW KE N+   ++ + EM  +++     V+ Y   +    + K+ D A++    M+
Sbjct: 266 ILLEGWGKEHNLLRLDEVYLEM--KYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEME 323

Query: 282 GENCFPT-------------LKFFSNALDILVKLN-----------DSTHAVQLWDIM-- 315
            +NC PT              K  S AL+   +             +S      W +   
Sbjct: 324 AKNCKPTPHVYCTLINGLGSEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMRID 383

Query: 316 --------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE--WQPTPLNCAT 365
                   M  H A P+S TY++I   LIK +R +E    F +M  NE   +PT      
Sbjct: 384 DAFQVIDEMRKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKM-SNEPGCEPTVSTYEI 442

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
            + M  + D  ++A ++W+ +   G+LP     ++L+  L +  +L +  ++ +EML+  
Sbjct: 443 IVRMFCNEDRVDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDAG 502

Query: 426 ILIYEVTMHKLKKAFYNESRS 446
           I         LK+A  +E ++
Sbjct: 503 IRPPAKMFSNLKQALLDEGKN 523



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 117/275 (42%), Gaps = 7/275 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++ ++++  GK     ++      MK DG    + T+  +  +YC A KYD A+  F  M
Sbjct: 263 SYTILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVTYGILISAYCKAKKYDAAIELFHEM 322

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
                +       +L++ +   E + S ALEF  R K     P+  ++  L+  +     
Sbjct: 323 EAKNCKPTPHVYCTLINGLG-SEKRLSEALEFFERFKSCGFTPEAPTYNSLVGAYCWSMR 381

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA-LKFLRVMKGENCFPTLKF 291
           +++A +   EM  +    P +   Y+  L  LI+ ++ +EA  +F ++     C PT+  
Sbjct: 382 IDDAFQVIDEM-RKHSAGP-NSRTYDIILHHLIKARRTNEAYFRFQKMSNEPGCEPTVST 439

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +   + +    +    A Q+WD M    G  P    Y+ +   L    ++ E  K+F EM
Sbjct: 440 YEIIVRMFCNEDRVDLAKQVWDQMKA-KGVLPGMHMYSDLITSLCHKNKLGEACKYFQEM 498

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           +    +P     +     LLD  + + A+ +   I
Sbjct: 499 LDAGIRPPAKMFSNLKQALLDEGKNDEALNLARKI 533


>gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Glycine max]
          Length = 507

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 204/435 (46%), Gaps = 45/435 (10%)

Query: 30  HNPHRPTRPR-FPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVL 88
           H+ + P++      H   P  +  A  IC IL+   +  +++ LA     P+P+LV EVL
Sbjct: 34  HHSNGPSKTHTLAFHTAQPRPTPDAEAICRILSTTPASTVDACLAAVPAKPSPELVLEVL 93

Query: 89  QLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS 146
               ++   A+ FFRWA +      +  A++ +++ LGK  +F+ +W  V  MK+  +L+
Sbjct: 94  NKLSNAGVLALSFFRWAEKQSEFKHTTEAFHALIEALGKIRQFKMIWTLVNDMKQRKLLT 153

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
             TF+ +   Y  A K  EA+ +F+ M  +G++  V   N L+  +C+ ++    A E  
Sbjct: 154 SDTFSLVARRYARARKAKEAIKTFEKMEHYGLKPHVSDFNKLVDVLCKSKS-VEEAHEVF 212

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITL 264
           ++++K+ +DPD  S+ ILLEGW ++ N+ + N+   EM ++ F+ +   V+AY   +   
Sbjct: 213 DKMRKLRLDPDIKSYTILLEGWSQQQNLIKVNEVCREMEDKGFQLD---VVAYGIIMNAH 269

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--------- 315
            + K+ DEA+     MK     P+   +   ++ L        A++ +++          
Sbjct: 270 CKAKKFDEAIGLYHEMKARGVRPSPHVYCTLINGLGSDKRLDEALEFFEVSKASGFVPEA 329

Query: 316 -------------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
                                    M   G  P+S T++++   LIK +R+ E    F  
Sbjct: 330 PTYNAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRIEEASSVFRR 389

Query: 351 MIKNEW--QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
           M   E+  +P+       + M  + +  ++A+ +W+ +   GILP     + L+  L + 
Sbjct: 390 MNGGEFGCEPSVSTYEIMVRMFCNEELLDMAVAVWDEMKGKGILPGMHMFSTLVCALCHE 449

Query: 409 GRLSDVRRFAEEMLN 423
            +L +  ++ +EML+
Sbjct: 450 SKLDEACKYFQEMLD 464



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 126/281 (44%), Gaps = 12/281 (4%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
           R  RL P   ++ ++++   +     ++    R M++ G  L +  +  I +++C A K+
Sbjct: 216 RKLRLDPDIKSYTILLEGWSQQQNLIKVNEVCREMEDKGFQLDVVAYGIIMNAHCKAKKF 275

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF--LNRVKKIVDPDGDSFA 221
           DEA+  +  M   GV        +L++ +   + +   ALEF  +++    V P+  ++ 
Sbjct: 276 DEAIGLYHEMKARGVRPSPHVYCTLINGL-GSDKRLDEALEFFEVSKASGFV-PEAPTYN 333

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            ++  +     +++A +  GEM ++    P +   ++  L  LI+G++++EA    R M 
Sbjct: 334 AVVGAYCWSLRMDDAYRMVGEM-KKCGIGP-NSRTFDIVLHHLIKGRRIEEASSVFRRMN 391

Query: 282 GE--NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           G    C P++  +   + +         AV +WD  M   G  P    ++ +   L    
Sbjct: 392 GGEFGCEPSVSTYEIMVRMFCNEELLDMAVAVWD-EMKGKGILPGMHMFSTLVCALCHES 450

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
           ++ E  K+F EM+    +P     +T    L+DA    +A+
Sbjct: 451 KLDEACKYFQEMLDVGIRPPAKMFSTLKEALVDAGMEHVAM 491


>gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g71060, mitochondrial; Flags: Precursor
 gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana]
 gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 203/460 (44%), Gaps = 49/460 (10%)

Query: 42  THLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDF 101
           T + A   S  A  IC+IL   +   +E+ L    +  +P L+ EVL+   ++   A+  
Sbjct: 55  TQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSV 114

Query: 102 FRWA--GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159
           F+WA   +G + +   +N +++ LGK  +F+ +W+ V  MK   +LS  TFA I   Y  
Sbjct: 115 FKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISRRYAR 174

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           A K  EA+ +F  M   G + +    N +L  + +  N       F    KK  +PD  S
Sbjct: 175 ARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKS 234

Query: 220 FAILLEGWEKEGN---VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
           + ILLEGW +E N   V+E N+   +  E FE  P+ V+AY   +    + K+ +EA++F
Sbjct: 235 YTILLEGWGQELNLLRVDEVNREMKD--EGFE--PD-VVAYGIIINAHCKAKKYEEAIRF 289

Query: 277 LRVMKGENCFPTLKFFS---NALDILVKLNDSTH---------------------AVQLW 312
              M+  NC P+   F    N L    KLND+                           W
Sbjct: 290 FNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCW 349

Query: 313 DIM----------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                        M   G  P++ TY++I   LI+ +R  E  + +  M     +PT   
Sbjct: 350 SQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM---SCEPTVST 406

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
               + M  + +  ++AI+IW+ +   G+LP     + L+  L +  +L +   +  EML
Sbjct: 407 YEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEML 466

Query: 423 NRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERRCKT 460
           +  I        +LK+   +E R   + D+   ++R  KT
Sbjct: 467 DVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKMDRLRKT 506


>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
 gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
          Length = 621

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/454 (24%), Positives = 206/454 (45%), Gaps = 45/454 (9%)

Query: 45  DAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW 104
           D+  ++   ++I E+ A     ++E+ L   G+  + DLV EVL     +   A  FF W
Sbjct: 141 DSTEVNRVCKVIDELFAL--DRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCW 198

Query: 105 AGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           A +  G       +N M+ +LGK  +FE M + +  M E  +L++ TF   F ++  A +
Sbjct: 199 AAQKPGFAHDSKTYNTMMTILGKTRQFETMVSLLEEMAEKELLTMETFTVCFKAFAAAKE 258

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
             +AV   ++M  +  +  V  +N LL ++ R +     AL    ++     P+  ++ +
Sbjct: 259 RKKAVGVLELMKKYKYKVGVETINCLLDSLGRAK-LGKEALTIFEKLHGRFTPNLQTYTV 317

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL GW +  N+ EA K + +M++  ++ P+ ++A+ T L  L+R K+  +A+K   VMK 
Sbjct: 318 LLNGWCRVRNLMEAGKIWNQMIDE-DFKPD-IVAHNTMLEGLLRCKKRSDAIKLFEVMKA 375

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--------------------------- 315
           +   P +K ++  +    K      AVQ ++ M                           
Sbjct: 376 KGPSPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDT 435

Query: 316 -------MVFHGAFPDSLTYNMIFECLIKNKRV-HEVEKFFHEMIKNEWQPTPLNCATAI 367
                  M  +G  PD  TYN + + L+ NKR+  +  + + +MI+N  +PT    +  +
Sbjct: 436 VYGLLKEMKANGCPPDGKTYNALIK-LMTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMM 494

Query: 368 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
                    E+ +  W+ +   G  P + S    + GL +LGR ++  ++ EEM+ + + 
Sbjct: 495 KSYFQTRNYEMGVAAWDEMKLKGCCPDDNSYTVFIGGLISLGRCAEAGKYLEEMIEKGMK 554

Query: 428 IYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTS 461
             ++  +K    F    R   DI + L ++ K S
Sbjct: 555 APQLDYNKFAADFSRAGRP--DILEELAQKMKFS 586


>gi|224110770|ref|XP_002315631.1| predicted protein [Populus trichocarpa]
 gi|222864671|gb|EEF01802.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 200/437 (45%), Gaps = 51/437 (11%)

Query: 63  ASSDDIESALA----CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAW 116
           +S D+I  +LA    C  I  + DLV ++L    D   SA+  FRWAG   G +  P A+
Sbjct: 18  SSPDEILLSLADEQVCDNIEVSNDLVDKLLLRFKDDWKSALGVFRWAGLRPGYKHRPEAY 77

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           ++MVD+LGK  + +QM   +  M  + +++L T       + GAGK+++AV  FD +   
Sbjct: 78  DMMVDILGKMKQMDQMRELLEEMNRNHLVTLNTVGKAMRRFSGAGKWEDAVRMFDELGTF 137

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G+E++  ++N LL  +C+ E +  +A      +K  + P+  +F I + GW K   V+EA
Sbjct: 138 GLEKNAESMNLLLDTLCK-EGKVEQARAIFLELKSHILPNAHTFNIFIHGWCKANLVDEA 196

Query: 237 NKTFGEM-------------------------------VERFEWN--PEHVLAYETFLIT 263
           + T  EM                               ++  E    P +V+ Y T ++ 
Sbjct: 197 HWTLQEMKGHAFRPCVISYSTIILFYCRQHNFSKVYELLDEMEAQGCPPNVVTYTTIIVF 256

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L + +  +EAL+  + MK   C P   FF++ + IL +      AV +++  M   G   
Sbjct: 257 LAKSQNTEEALQLTQRMKSAGCKPDTPFFNSLIYILGRAGRFQEAVDVFEKEMPNAGVSR 316

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML---LDADEPEIAI 380
           D+ TYN +   L  +  V +      EM  +   P  L+  T   +L   L   +  +  
Sbjct: 317 DTSTYNSMIAMLCHHGHVSKALSLLREMETS--APFKLDGQTFYPLLKSCLRTGDMNLLS 374

Query: 381 EIWNYILENGILPLEASANELLV-GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
           ++ + +++   L L+ SA  LL+ GL    +        EEM+++ I+    T H L   
Sbjct: 375 QLLDDMVKKHQLSLDRSAYALLIHGLCRANKCQWAYHLFEEMISKDIVPKYQTCHMLL-- 432

Query: 440 FYNESRSMRDIFDSLER 456
              E   ++ ++D+ E+
Sbjct: 433 ---EEVKLKSMYDTAEK 446


>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 570

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 175/386 (45%), Gaps = 15/386 (3%)

Query: 14  NKIIPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPY---ISSSARIICEILAHASSDDIES 70
           + ++  S  + + P S  P  P      +H +A +   I   +RI+    A  S + I  
Sbjct: 61  DPVVERSHGSVSKPLSILPGCPAPA---SHEEAEFEADIDEVSRILSSHFA--SPEAIVI 115

Query: 71  ALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGR 128
           A+ C  +  +  +V ++L+       +A  FF WAG  +    +A  +NLMVD+LGK  +
Sbjct: 116 AMDCCPVRVSGRMVDKILRRFGSDWVAAFGFFMWAGAQEGYCHHADLYNLMVDILGKFKQ 175

Query: 129 FEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           F+ +W  +R M E G L SL T   +     GA ++ +A+ +F+ M   GV +D  A+N+
Sbjct: 176 FDLLWGLIRQMDEIGCLVSLATMTKVMRRLAGANRWTDAIDAFNKMDQFGVVRDTKAMNA 235

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           LL  +C+ E    RA      ++ +V PD  SF  L+ GW +   + EA  T  EM E  
Sbjct: 236 LLDTLCK-EKSVKRARGVFQELRGVVPPDESSFNTLVHGWCQARMLNEARDTMKEM-EEH 293

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
            ++P  V+ Y + +      K        L  M  + C P +  ++  +  L K   +  
Sbjct: 294 GFSPS-VITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHALGKAGRTQE 352

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
           A+ ++D  +   G  PD+  YN I   L +  R+ +    F EM +    PT     T I
Sbjct: 353 ALDVFD-KVKRDGCVPDASFYNSIIYILGRAGRLEDANSVFDEMCRTGIPPTVAIFNTMI 411

Query: 368 TMLLDADEPEIAIEIWNYILENGILP 393
           +   D  + E A++I   + E    P
Sbjct: 412 SAACDHSQAENALKILVKMEEQSCKP 437



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 6/227 (2%)

Query: 134 NAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
           + ++ M+E G   S+ T+ S+ ++YC    +       + M   G   +V+    ++ A+
Sbjct: 285 DTMKEMEEHGFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHAL 344

Query: 193 CRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
             +  +T  AL+  ++VK+    PD   +  ++    + G +E+AN  F EM       P
Sbjct: 345 -GKAGRTQEALDVFDKVKRDGCVPDASFYNSIIYILGRAGRLEDANSVFDEMCR--TGIP 401

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
             V  + T +       Q + ALK L  M+ ++C P +K ++  L +  K       +  
Sbjct: 402 PTVAIFNTMISAACDHSQAENALKILVKMEEQSCKPDIKTYTPLLKLCCK-RQWMKILPF 460

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
               M      PD  TY ++   L +N +  +   F  EM+   + P
Sbjct: 461 LICHMFRKDISPDFSTYILLVTWLCRNGKPAQSCLFLEEMVLKGFMP 507



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA-SIFDSYCGAGKYDE 165
           +G R +   + +++  LGK GR ++  +    +K DG +   +F  SI      AG+ ++
Sbjct: 328 KGCRPNVITYTIVMHALGKAGRTQEALDVFDKVKRDGCVPDASFYNSIIYILGRAGRLED 387

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A   FD M   G+   V   N+++SA C   +Q   AL+ L ++ ++   PD  ++  LL
Sbjct: 388 ANSVFDEMCRTGIPPTVAIFNTMISAAC-DHSQAENALKILVKMEEQSCKPDIKTYTPLL 446

Query: 225 E 225
           +
Sbjct: 447 K 447


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 212/459 (46%), Gaps = 58/459 (12%)

Query: 16  IIPSSSSTT--TSPTSHNPHRPTRPR----FPTH---LDAPYISSSARIICEILAHASSD 66
           + P S ST+   SPT      P+R      FP H   L  P  +  A  IC IL+     
Sbjct: 13  LFPLSKSTSHFESPTVQFIQNPSRSLKFHIFPFHTSLLHKPN-NPHAETICRILSTTPES 71

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLG 124
            ++ +L    +  +P+LV  VL    ++   A+ FFRWA + Q  +     ++ +++ LG
Sbjct: 72  PVDVSLRNFPVEVSPELVVAVLNKLSNAGILALSFFRWAEKQQGFNHNTEIFHALIEALG 131

Query: 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
           K  +F+ +WN V  MK+  +L+  TF+ I   Y  A    EA+ +F+ M  +G++  +  
Sbjct: 132 KIRQFKMIWNLVDEMKQRKLLNGDTFSLIARRYVRAKVIKEALKTFERMEKYGLKPQISD 191

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANK----- 238
            N L+  +C+ +    +A E  +++++  ++P+  S+ IL+EGW ++ N+ + ++     
Sbjct: 192 FNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPNLKSYTILIEGWSQQQNLLKVDEVCREM 251

Query: 239 ----------TFGEMVERF-------------------EWNPE-HVLAYETFLITLIRGK 268
                     T+G ++  +                     NP  H+  Y TF+  L  G 
Sbjct: 252 KDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLSKNVNPSPHI--YCTFITGLGNGS 309

Query: 269 QVDEALKFLRVMKGENC---FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           ++DEA +F    K        PT     +A    ++++D+   V      M   G  P++
Sbjct: 310 RMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVG----EMKELGIGPNA 365

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEM-IKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            TY++I   LIK  R  E    F  M  +   +P+    A  + M  + ++ ++A+ +WN
Sbjct: 366 RTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQLDMAMVVWN 425

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
            + + GILP     + L++ L +  +L D  R+ ++ML+
Sbjct: 426 EMKDKGILPGIHMFSTLIISLCHENKLDDACRYFQQMLD 464



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 80/185 (43%), Gaps = 6/185 (3%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           SP+ +   +  LG   R ++ +      K  G     PT+ ++  +YC + + D+A    
Sbjct: 294 SPHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIV 353

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIVDPDGDSFAILLEGWE 228
             M   G+  +    + +L  + +   +T  A     R+  +   +P   ++AI++  + 
Sbjct: 354 GEMKELGIGPNARTYDIILVHLIKG-GRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFC 412

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
            E  ++ A   + EM ++      H+  + T +I+L    ++D+A ++ + M      PT
Sbjct: 413 NENQLDMAMVVWNEMKDKGILPGIHM--FSTLIISLCHENKLDDACRYFQQMLDVGIRPT 470

Query: 289 LKFFS 293
              FS
Sbjct: 471 ANMFS 475


>gi|356549210|ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Glycine max]
          Length = 648

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 169/351 (48%), Gaps = 8/351 (2%)

Query: 56  ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRL 111
           +C+++    A   ++E  L   G+  + DLV +VLQ    +   A  FF WAG+  G   
Sbjct: 177 VCKVIDELFALDRNMEVVLDECGVRLSHDLVVDVLQRFKHARKPAFRFFCWAGKRPGFAH 236

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
               +N M+ VLG+  +FE M   +  M E G+L++ TF+    ++  A +  +AV  FD
Sbjct: 237 DSRTYNFMMCVLGRTRQFETMVAMLEEMGEKGLLTMETFSIAIKAFAEAKQRKKAVGIFD 296

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M  +G +  V  +N LL ++         A     ++K    P   ++ ILL GW +  
Sbjct: 297 LMKKYGFKVGVDVINFLLDSL-STAKLGKEAQAVFEKLKDRFTPSLQTYTILLSGWCRLK 355

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ EA + + EM++R  +NP+ V+A+   L  L++ K+  +A+K   +MK +   P ++ 
Sbjct: 356 NLLEAGRVWNEMIDR-GFNPD-VVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRS 413

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +    K      A++ +D+ MV  G  PD+  Y  +     + K++  V     EM
Sbjct: 414 YTIMIQDFCKQKLMGEAIEYFDV-MVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLKEM 472

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
            +    P        I ++     P+ A+ I+  ++++GI P   + N ++
Sbjct: 473 RERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIM 523


>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
 gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
          Length = 523

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 196/437 (44%), Gaps = 17/437 (3%)

Query: 13  KNKIIPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPY---ISSSARIICEILAHASSDDIE 69
           K + + S   +  +  SH+   P     P +   P    ++  +RI+ +        D+E
Sbjct: 9   KTRTLHSLFQSLCTSKSHSHRHPLSTLTPLNQIPPLPGLVNEISRILSD--QRNPHHDLE 66

Query: 70  SALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNG 127
           ++L       + +LV +VL+   +   SA  FF WA R  G   S  +++++V++LG + 
Sbjct: 67  TSLNAFSSEISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSEESYHILVNILGTSR 126

Query: 128 RFEQMWNAVRVMKE--DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           +F  +W+ +  M+E  D  ++      +F SY  A    +A+ +FD M+  G+   V  +
Sbjct: 127 QFAILWDFLIEMRESHDFEINQEIIWLVFRSYSRANLPSDAIRAFDRMAEFGLRPSVDDL 186

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           + LL  +C+ ++    A +F +RVK   +    +++IL+ GW   G   EA K F EM  
Sbjct: 187 DKLLYVLCKCKHVKC-AQQFFDRVKHKFEAKAKTYSILVRGWGDIGEAVEARKVFDEM-- 243

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
           R       VLAY + L  L +G  VDEA K  R +      P    ++  +    + N+ 
Sbjct: 244 RGRGCALDVLAYNSLLEALCKGGNVDEAYKMFREIGSHGVEPDACSYAIFIRAYCEANNI 303

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
                + D M  +    P+  TYN I + L KN +V +  +  HEM++    P   +  T
Sbjct: 304 HSVFSVLDRMKRY-DLVPNVFTYNCIIKKLCKNGKVEDAYQLLHEMMERGVSPDAWSYNT 362

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR- 424
            +    +  E   A ++ + ++++  LP   S N LL  L  +GR        E M  R 
Sbjct: 363 ILAYHCEHSEVNRATKLISIMVKDNCLPDRHSYNMLLKLLVRVGRFDRATEIWESMGERG 422

Query: 425 ---RILIYEVTMHKLKK 438
               +  Y V +H L K
Sbjct: 423 FYPSVSTYSVMIHGLCK 439



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 93/233 (39%), Gaps = 5/233 (2%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           GRG  L   A+N +++ L K G  ++ +   R +   GV     ++A    +YC A    
Sbjct: 245 GRGCALDVLAYNSLLEALCKGGNVDEAYKMFREIGSHGVEPDACSYAIFIRAYCEANNIH 304

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAIL 223
                 D M  + +  +V   N ++  +C+   +   A + L+ + ++ V PD  S+  +
Sbjct: 305 SVFSVLDRMKRYDLVPNVFTYNCIIKKLCKN-GKVEDAYQLLHEMMERGVSPDAWSYNTI 363

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           L    +   V  A K    MV+       H  +Y   L  L+R  + D A +    M   
Sbjct: 364 LAYHCEHSEVNRATKLISIMVKDNCLPDRH--SYNMLLKLLVRVGRFDRATEIWESMGER 421

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
             +P++  +S  +  L K          +   M+  G  P + T  M+   LI
Sbjct: 422 GFYPSVSTYSVMIHGLCKKKGKLEEACRYFETMIDEGIPPYASTIEMLRNRLI 474


>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
 gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 186/415 (44%), Gaps = 42/415 (10%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P LV E L+   ++ + A+ FFRWA   +G + S  +++ +++ LGK  +F  +WN V 
Sbjct: 4   SPSLVFEALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWNLVT 63

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
            MK+ G+L+  TFA I   Y  A K  EAV +F  M   G++ +   VN LL  +C+   
Sbjct: 64  DMKQKGLLNKETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCKSRQ 123

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLA 256
                L F    K+    D  S+ ILLEGW +E N+    + + EM  E FE  P+ V+ 
Sbjct: 124 VERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGFE--PD-VVT 180

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM- 315
           Y   +    + ++ D+A++    M+ +NC P+   +   ++ L      + A++ +++  
Sbjct: 181 YGILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFELSK 240

Query: 316 ---------------------------------MVFHGAFPDSLTYNMIFECLIKNKRVH 342
                                            M   G  P + TY++I   LI+  +  
Sbjct: 241 ASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHLIRAGKTK 300

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
                F +M     QP+       + M  + D  ++AI++W+ +   GILP+    + L+
Sbjct: 301 IAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMFSTLI 360

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 457
             L +  +L +   + +EML+  I         LK+   +E +  +D     ER+
Sbjct: 361 NSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDEGK--KDTVVVFERK 413


>gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 187/430 (43%), Gaps = 40/430 (9%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLM 119
           H+S D +  AL  +G   +  LV +VL+   +   +A  FF WA +      SP  +NLM
Sbjct: 158 HSSHDHVVQALDGSGFRVSNSLVMQVLKRFGNDWVAAYGFFIWAKKQTPYVHSPEVYNLM 217

Query: 120 VDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
           VD+LGK   F+ MW  V+ MK  +G + L T + +   +  A ++++AV +F  M  +GV
Sbjct: 218 VDILGKAKEFDLMWKLVKEMKRIEGYVCLDTMSKVMRRFAKAQRHEDAVEAFRGMGKYGV 277

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
           E+D  A+N LL A+ + ++    A   L+  K  V     SF IL+ GW K  N E+A K
Sbjct: 278 EKDTAALNKLLDALVKGQS-IEIAHNVLDEFKSSVPLSSPSFNILINGWCKVRNFEKARK 336

Query: 239 TFGEMVER------FEWN---------------------------PEHVLAYETFLITLI 265
              E  E       F +N                           P + + Y   L+   
Sbjct: 337 VMEERKEHGFEPDVFTYNNFIESYCHDKDFRKVDEVLEEMRGNGCPPNAVTYTILLLGYG 396

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           +  Q+ +AL+    MK +   P   F+S+ + IL K      A +++D M    G   D 
Sbjct: 397 KAGQLSKALEEYERMKKDGIVPDTPFYSSLMYILGKAGRLKDACEVFDDMPK-QGVVRDV 455

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TYN +      + +     +   EM +   +P        + M       ++   + ++
Sbjct: 456 VTYNTMISTACAHSKEETALRLLKEMEETSCKPDLQTYHPLLKMCCKKKRMKVLKFLLDH 515

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           + ++ + P   +   L+  L N G+L +   F EEM+++     E T+  L +    E +
Sbjct: 516 MFKHDLCPDRGTYTLLVQSLSNSGKLVEACTFFEEMVSKGFTPMETTVKLLTRKL--EIK 573

Query: 446 SMRDIFDSLE 455
           SM    D +E
Sbjct: 574 SMLKEKDQIE 583



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 11/148 (7%)

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL---DADE 375
           HG  PD  TYN   E    +K   +V++   EM  N   P   N  T   +LL    A +
Sbjct: 344 HGFEPDVFTYNNFIESYCHDKDFRKVDEVLEEMRGNGCPP---NAVTYTILLLGYGKAGQ 400

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEV 431
              A+E +  + ++GI+P     + L+  L   GRL D     ++M    + R ++ Y  
Sbjct: 401 LSKALEEYERMKKDGIVPDTPFYSSLMYILGKAGRLKDACEVFDDMPKQGVVRDVVTYN- 459

Query: 432 TMHKLKKAFYNESRSMRDIFDSLERRCK 459
           TM     A   E  ++R + +  E  CK
Sbjct: 460 TMISTACAHSKEETALRLLKEMEETSCK 487


>gi|449494995|ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 488

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 160/340 (47%), Gaps = 40/340 (11%)

Query: 55  IICEILAHASSDDIESAL----ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--G 108
           II ++   +S D++  +L     C  I  + DLV+++LQ   D   SA+  FRWA    G
Sbjct: 43  IIAKVQVGSSEDEVFQSLLQDPVCNSIQLSHDLVYKLLQRFKDDWKSALGVFRWAESLSG 102

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
            + +P  +++++D LGK  +  +M   +  MKE  +++L T A     + GAG+++ AV 
Sbjct: 103 FKHTPDLYDILIDTLGKTKQLVKMRGMLEEMKEARLVTLDTVAKAMRRFAGAGQWENAVR 162

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            FD +  +G+E++  ++N LL  +C+ E +  +A +    +K  + P+ ++F + + GW 
Sbjct: 163 IFDDLETYGLEKNTESMNVLLDTLCK-EKKVEKARQMYLELKSHIAPNANTFNMFIHGWC 221

Query: 229 KEGNVEEANKTFGEM-------------------VERFEWN--------------PEHVL 255
           K   ++EA+ T  EM                     R  +N              P +V+
Sbjct: 222 KVNKIDEAHWTLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVI 281

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y T + +L + ++ +EAL+    MK     P   F++  +  L +      A+ ++++ 
Sbjct: 282 TYTTIMCSLTKSEEFEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVE 341

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           M      P++ TYN +     +  R  +  K   EM K+E
Sbjct: 342 MPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLLEEMQKSE 381



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 17/231 (7%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           ++++I   YC    +++     D M   G   +V+   +++ ++ + E +   AL+   R
Sbjct: 247 SYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVITYTTIMCSLTKSE-EFEEALQIAER 305

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL----AYETFLIT 263
           +K    +PD   +  L+    + G V EA   F       E   + VL     Y + +  
Sbjct: 306 MKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVF-----EVEMPSKSVLPNTSTYNSMIAM 360

Query: 264 LIRGKQVDEALKFLRVM-KGENCFPTLKFFSNALDILVKLNDSTHAV-QLWDIMMVFHGA 321
             R  + ++A+K L  M K E+C P ++ +   L    +   + + +  L D M+  H  
Sbjct: 361 YCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNLLDEMINKHHL 420

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
             D  TY+++   L +  +     + F +MI  + +P  L C     +LLD
Sbjct: 421 SLDISTYSLLIHGLCRANKCDWAYQLFEKMISQDIKPRYLTC----QLLLD 467


>gi|449435037|ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Cucumis sativus]
          Length = 519

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 160/340 (47%), Gaps = 40/340 (11%)

Query: 55  IICEILAHASSDDIESAL----ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--G 108
           II ++   +S D++  +L     C  I  + DLV+++LQ   D   SA+  FRWA    G
Sbjct: 74  IIAKVQVGSSEDEVFQSLLQDPVCNSIQLSHDLVYKLLQRFKDDWKSALGVFRWAESLSG 133

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
            + +P  +++++D LGK  +  +M   +  MKE  +++L T A     + GAG+++ AV 
Sbjct: 134 FKHTPDLYDILIDTLGKTKQLVKMRGMLEEMKEARLVTLDTVAKAMRRFAGAGQWENAVR 193

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            FD +  +G+E++  ++N LL  +C+ E +  +A +    +K  + P+ ++F + + GW 
Sbjct: 194 IFDDLETYGLEKNTESMNVLLDTLCK-EKKVEKARQMYLELKSHIAPNANTFNMFIHGWC 252

Query: 229 KEGNVEEANKTFGEM-------------------VERFEWN--------------PEHVL 255
           K   ++EA+ T  EM                     R  +N              P +V+
Sbjct: 253 KVNKIDEAHWTLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVI 312

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y T + +L + ++ +EAL+    MK     P   F++  +  L +      A+ ++++ 
Sbjct: 313 TYTTIMCSLTKSEEFEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVFEVE 372

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           M      P++ TYN +     +  R  +  K   EM K+E
Sbjct: 373 MPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLLEEMQKSE 412



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 17/231 (7%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           ++++I   YC    +++     D M   G   +V+   +++ ++ + E +   AL+   R
Sbjct: 278 SYSTIILFYCHRCNFNKVYELLDEMDAQGCPANVITYTTIMCSLTKSE-EFEEALQIAER 336

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL----AYETFLIT 263
           +K    +PD   +  L+    + G V EA   F       E   + VL     Y + +  
Sbjct: 337 MKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVF-----EVEMPSKSVLPNTSTYNSMIAM 391

Query: 264 LIRGKQVDEALKFLRVM-KGENCFPTLKFFSNALDILVKLNDSTHAV-QLWDIMMVFHGA 321
             R  + ++A+K L  M K E+C P ++ +   L    +   + + +  L D M+  H  
Sbjct: 392 YCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCFRTGKTDYDLSNLLDEMINKHHL 451

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
             D  TY+++   L +  +     + F +MI  + +P  L C     +LLD
Sbjct: 452 SLDISTYSLLIHGLCRANKCDWAYQLFEKMISQDIKPRYLTC----QLLLD 498


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 195/459 (42%), Gaps = 67/459 (14%)

Query: 25  TSPTSHNPHRPTRPRFPTHLDAPYISSSARIIC-EILAHASSDDIESALACTGIIPTPDL 83
           ++P    P  PT       LD   I S+ R I   I+ H     I  + A    IP P +
Sbjct: 22  SNPRKTPPPDPTYTISSLSLDFSQIISTVRSISPSIVRHV----IAQSSAVRHGIPVPQV 77

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           +                FF WA    G R SP A+N MVD  G+   F+  W  + +MK 
Sbjct: 78  LA---------------FFNWASNQDGFRKSPEAYNEMVDFSGQVMMFDVAWYFIDLMKA 122

Query: 142 DGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
             V +++ TF  +   Y  AG   EA+ +F+ M  +  + D +A + L+S +CR E + S
Sbjct: 123 RNVDVTVETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCR-ERRAS 181

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           +A EF + +K   +PD   +  L+ GW + GN+ EA + FGEM  +      +V  Y   
Sbjct: 182 QAQEFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEM--KVAGIKPNVYTYSIV 239

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           + +L R  Q+  A      M    C P    +++ + I VK   +   +Q+++ M    G
Sbjct: 240 IDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRL-G 298

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP-------------------- 360
             PD++TYN + E   K++ + +  K    M K    P                      
Sbjct: 299 CEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAH 358

Query: 361 --------LNCA-------TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
                   LNC        T + M + +   ++ +++   + EN I P   +   L+   
Sbjct: 359 RMYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPNVNTYKVLITMY 418

Query: 406 RNLGRLSDVRRFAEEMLNRRIL-----IYEVTMHKLKKA 439
             +G  ++  +F  EM++ + L     +Y++ + +L+KA
Sbjct: 419 CGMGHWNNAYKFFREMIDEKCLRPSLPVYDMVLQQLRKA 457


>gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial [Vitis vinifera]
          Length = 496

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 182/391 (46%), Gaps = 14/391 (3%)

Query: 55  IICEILAHASSDDIESAL----ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--G 108
           I+  I   +S D++  +L    AC  I  + +LV  +L    D   SA+  FRWA    G
Sbjct: 48  IVSRIREGSSDDEVFKSLVHDEACNAIPMSQNLVDVLLHRFKDDWKSALGLFRWAESRLG 107

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
              +P A+++MVD+LGK  + ++M   +  M++  ++ L T A       GAG++++AV 
Sbjct: 108 YEHAPEAYDMMVDILGKLKQVDKMRALMEEMRQGNLVRLSTVAKAMRRLAGAGEWEDAVR 167

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            FD +    +E++  ++N LL  +C+ E +  +A      +K  + P+  +F I + GW 
Sbjct: 168 VFDDLGNFELEKNTESMNLLLDTLCK-ERKVEQARAIFLELKPHISPNTHTFNIFIHGWC 226

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K   V+EA  T  EM  +       V++Y T + +  R     +  + L  M+ + C P 
Sbjct: 227 KANRVDEAEWTIQEM--KGHGCRPCVISYSTIIQSYCRQSNFRKVYELLDDMQAQGCAPN 284

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  ++  +  L K+     A+Q+ + M    G  PD+L YN +   L +  ++ E  + F
Sbjct: 285 VVTYTTIMCSLTKVEQFEEALQIAERMRSV-GCKPDTLFYNALIHTLGRAGQLREAVRVF 343

Query: 349 H-EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL--PLEASANELLVGL 405
             EM K    P      + I M     + + A+ +   I EN     P   +   +L   
Sbjct: 344 EVEMPKTGVPPNTSTYNSMIAMFCHHSQEQKALNLLREI-ENSTFCKPDIQTYYPVLKSC 402

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
              G++  +  F ++M+N+  L  +V+ + L
Sbjct: 403 FKTGKIDSLSNFLDDMVNKHHLSLDVSAYTL 433


>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 171/386 (44%), Gaps = 14/386 (3%)

Query: 16  IIPSSSSTTTSPTSHNPHRP--TRPRFPTHLDAPY---ISSSARIICEILAHASSDDIES 70
           ++P  S+     +     +P   RP   +H +A +      ++RI+    A  S + I  
Sbjct: 58  VLPIKSNPVEERSHGGGSKPLSIRPEAASHEEAEFEADFDEASRILTSCFA--SPEAIVI 115

Query: 71  ALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGR 128
           A+ C  +  +  +V ++L+       +A  FF WAG   G R S  ++N MVD+LGK  +
Sbjct: 116 AMDCCPVRVSDRMVDKILRRFGSDWVAAFGFFMWAGAQEGYRHSADSYNSMVDILGKFKQ 175

Query: 129 FEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           F+ MW  +  M E  G++SL T   +     GA ++ +A+ +F+ M   GV +D  A+N 
Sbjct: 176 FDLMWGLISQMDEIGGLVSLATMTKVMRRLAGASRWTDAIDAFNKMDQFGVVKDTTAMNV 235

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           LL  +C+ E    RA      ++  V PD  SF  L+ GW K   + EA     EM E  
Sbjct: 236 LLDTLCK-ERSVKRARGAFQELRGSVPPDESSFNTLVHGWCKARMMNEARDMMKEM-EEH 293

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
            + P  V+ Y + +      K        L  M+ + C P +  ++  +  L K   +  
Sbjct: 294 GFKPS-VITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNVITYTIVMHALGKAGRTQE 352

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
           A+ ++D  +   G  PD+  YN +   L +  R+ +      +M     +PT     T I
Sbjct: 353 ALDIFD-KVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVDKMRMTGVRPTVATFNTLI 411

Query: 368 TMLLDADEPEIAIEIWNYILENGILP 393
           +   D  + E A+++   + E    P
Sbjct: 412 SAACDHSQAENALKMLVKMEEQSCKP 437



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 103/246 (41%), Gaps = 6/246 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N +V    K     +  + ++ M+E G   S+ T+ S+ ++YC    +       + M
Sbjct: 266 SFNTLVHGWCKARMMNEARDMMKEMEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEM 325

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G   +V+    ++ A+  +  +T  AL+  ++V+     PD   +  L+    + G 
Sbjct: 326 RSKGCPPNVITYTIVMHAL-GKAGRTQEALDIFDKVRGDGCAPDASFYNSLIYILGRAGR 384

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +E+AN    +M  R       V  + T +       Q + ALK L  M+ ++C P +K +
Sbjct: 385 LEDANSVVDKM--RMTGVRPTVATFNTLISAACDHSQAENALKMLVKMEEQSCKPDIKTY 442

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  L +  K       ++     M      PD  TY ++   L +N +  +   F  EM+
Sbjct: 443 TPLLKLCCK-RQWIKVLRFLICHMFRKDITPDFSTYTLLVTWLCRNGKPAQSCLFLEEMV 501

Query: 353 KNEWQP 358
              + P
Sbjct: 502 LKGFAP 507


>gi|297821162|ref|XP_002878464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324302|gb|EFH54723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 628

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/444 (22%), Positives = 201/444 (45%), Gaps = 43/444 (9%)

Query: 56  ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS- 112
           +C+++    A   ++E+ L    +  + DL+ +VL+    +   A  FF WA   Q  + 
Sbjct: 143 VCKVIDELFALDRNMEAVLDEMKVELSHDLIVKVLERFRHARKPAFRFFCWAAEKQGFAH 202

Query: 113 -PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
               +N M+ +L K  +FE M + +  M   G+L++ TF     ++  A +  +AV  F+
Sbjct: 203 DSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFE 262

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M  +  +  V  +N LL ++ R +     A    +++K+   P+  ++ +LL GW +  
Sbjct: 263 LMKKYKFKIGVETINCLLDSLGRAK-LGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVR 321

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ EA + + +M+++    P+ ++A+   L  L+R ++  +A+K   VMK +   P ++ 
Sbjct: 322 NLIEAARIWNDMIDQ-GLKPD-IVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRS 379

Query: 292 FSNALDILVKLNDSTHAVQLWDIM----------------------------------MV 317
           ++  +    K +    A++ +D M                                  M 
Sbjct: 380 YTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQ 439

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
             G  PD  TYN + + +   K      + +++MI+NE +P+       +     A   E
Sbjct: 440 EKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYE 499

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437
           +   +W+ +++ GI P + S   L+ GL   G+  +  R+ EEML++ +    +  +K  
Sbjct: 500 MGSAVWDEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFA 559

Query: 438 KAFYNESRSMRDIFDSLERRCKTS 461
             F+   +   +IF+ L +R K S
Sbjct: 560 ADFHKGGQP--EIFEELAQRAKFS 581


>gi|255580124|ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529547|gb|EEF31500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 175/380 (46%), Gaps = 12/380 (3%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLG 124
           D+E +L       +  LV +VL+   +   SA  FF WA R  G   S  +++++VD+LG
Sbjct: 60  DLELSLTTYSSHISTTLVEQVLKRCKNLGFSAQRFFLWAKRIPGFDHSKESYHILVDILG 119

Query: 125 KNGRFEQMWNAVRVMKE--DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
            + +F  +W+ +  ++E  D  +S   F  +F +Y  A    +A+ +FD M   G++  +
Sbjct: 120 SSKQFALLWDFLIEIRESQDFEISPQVFWLVFRAYSRANLPSDAIRAFDRMVEFGLKPTI 179

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             ++ LL  +C++++    A +  +RVK        +++IL+ GW   G    A K F E
Sbjct: 180 DDLDQLLYVLCKRKH-AKHAQQIFDRVKHQFQTRAKTYSILVRGWGDIGESVSACKVFDE 238

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M E  +     VLAY + L    +G +V EA K  R M      P    FS  +    + 
Sbjct: 239 MRE--QQCAVDVLAYNSLLEAFCKGGKVSEAYKMFREMGSNGIKPDACTFSIFIRAYCEA 296

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
           ND   A ++ D M  +    P+  TYN + + L K ++V E  +  +E+I+   QP   +
Sbjct: 297 NDIHLAYRVLDEMKRY-DLVPNVFTYNCMIKKLCKKEKVEEAYQLLNEIIERSGQPDAWS 355

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
               +    +  E   A  + + ++++  LP + S N LL  L  +GR        E M 
Sbjct: 356 YNAILAYHCEHSEVNSATRLISRMVKDNCLPDKHSYNMLLKLLIRVGRFDRAIEVWESMG 415

Query: 423 NR----RILIYEVTMHKLKK 438
            +     +  Y V +H L K
Sbjct: 416 EKGFYPSVSTYSVMVHGLCK 435



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 14/216 (6%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            + S+ +++C  GK  EA   F  M  +G++ D    +  + A C + N    A   L+ 
Sbjct: 250 AYNSLLEAFCKGGKVSEAYKMFREMGSNGIKPDACTFSIFIRAYC-EANDIHLAYRVLDE 308

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF----EWNPEHVLAYETFLIT 263
           +K+  + P+  ++  +++   K+  VEEA +   E++ER      W+   +LAY      
Sbjct: 309 MKRYDLVPNVFTYNCMIKKLCKKEKVEEAYQLLNEIIERSGQPDAWSYNAILAYHC---- 364

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
                +V+ A + +  M  +NC P    ++  L +L+++     A+++W+ M    G +P
Sbjct: 365 --EHSEVNSATRLISRMVKDNCLPDKHSYNMLLKLLIRVGRFDRAIEVWESMGE-KGFYP 421

Query: 324 DSLTYNMIFECLIKNK-RVHEVEKFFHEMIKNEWQP 358
              TY+++   L K K ++ E  K+F  MI     P
Sbjct: 422 SVSTYSVMVHGLCKKKGKLEEACKYFEMMIDEGIPP 457



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 5/224 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+N +++   K G+  + +   R M  +G+     TF+    +YC A     A    D M
Sbjct: 250 AYNSLLEAFCKGGKVSEAYKMFREMGSNGIKPDACTFSIFIRAYCEANDIHLAYRVLDEM 309

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
             + +  +V   N ++  +C++E +   A + LN + ++   PD  S+  +L    +   
Sbjct: 310 KRYDLVPNVFTYNCMIKKLCKKE-KVEEAYQLLNEIIERSGQPDAWSYNAILAYHCEHSE 368

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V  A +    MV+      +H  +Y   L  LIR  + D A++    M  +  +P++  +
Sbjct: 369 VNSATRLISRMVKDNCLPDKH--SYNMLLKLLIRVGRFDRAIEVWESMGEKGFYPSVSTY 426

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
           S  +  L K          +  MM+  G  P S T  ++   LI
Sbjct: 427 SVMVHGLCKKKGKLEEACKYFEMMIDEGIPPYSSTVEILRNRLI 470


>gi|242064598|ref|XP_002453588.1| hypothetical protein SORBIDRAFT_04g008550 [Sorghum bicolor]
 gi|241933419|gb|EES06564.1| hypothetical protein SORBIDRAFT_04g008550 [Sorghum bicolor]
          Length = 365

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 168/365 (46%), Gaps = 59/365 (16%)

Query: 18  PSSSSTTTS-PTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTG 76
           PS S+ T + P +     P+ P FPT+ +A  +    RI  +ILA  + DD+++ L  T 
Sbjct: 10  PSDSAATVALPAAKLARDPSSPAFPTNKEATDLPPKTRIFYDILASRTDDDVDATLDKTD 69

Query: 77  I--IPTPDL--VHEVLQLSYDSPSSAVDFFRWAGRGQ----RLSPYAWNLMVDVLGKNGR 128
           I  + T D+  VH         P +A  FF WAG         SP +WNL+VD+L  N  
Sbjct: 70  IRGVTTVDVEQVH---------PHAATAFFHWAGHRHLDHDNHSPNSWNLIVDILSTNCL 120

Query: 129 FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
           F +MW  V  +    +L L TFAS+F S   +          D M  + + +D +A+NSL
Sbjct: 121 FTRMWETVDSIHSRRLLLLDTFASVFSSLAASPGCCLLKAFMDDMLRYDMTRDTLALNSL 180

Query: 189 LSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           LSA+CR +    + A   + R +     D DS+ ILLE +E   +   A   F +MV   
Sbjct: 181 LSALCRGDRLDDAHATILVARAEAGTLLDADSYTILLECYEATPDTRAARNVFDKMVRDI 240

Query: 248 EWNPEHVLAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTL--KFFSNALDILVKL 302
             + ++V AY+ FL TL+       + +A+ +L  +    C P +  +FF  AL + +++
Sbjct: 241 GVDLDNVPAYDAFLTTLVSSNSSMALPKAMYYLDFLNRRGCSPGVGERFFRAALAVHLEV 300

Query: 303 NDSTHAVQLWD------------------IM-----------------MVFHGAFPDSLT 327
            +   A  LWD                  IM                 M+F+G FP++ T
Sbjct: 301 GELRGATYLWDKFVGRRGLVRDMEMYNRMIMLQGSLGHGEVIVDYLDDMIFNGLFPNTNT 360

Query: 328 YNMIF 332
           YN++ 
Sbjct: 361 YNVVL 365


>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/461 (23%), Positives = 205/461 (44%), Gaps = 50/461 (10%)

Query: 45  DAPYISSSAR-----IICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSS 97
           D   I+SSA       +C+++    A   ++E+ L   GI  + DLV +VL+    +   
Sbjct: 52  DGEKINSSADPVEVDRVCKVIDELFALDRNMEAVLDECGINLSHDLVIDVLERFCHARKP 111

Query: 98  AVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFD 155
           A  FF WAG  Q        +N M+ +L K  +FE + + +  M   GVL++ TF+    
Sbjct: 112 AFRFFCWAGEKQGFEHDSRTYNSMMSILAKTRQFETVVSMLEEMGGKGVLTMDTFSIAMR 171

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE-NQTSRALEFLNRVKKIVD 214
           ++  A +  +AV  F++M  +  +  V  +N LL ++ R +  + ++AL     +K    
Sbjct: 172 AFAAAKERKKAVAMFELMKKYNYKVGVETINHLLDSLGRAKLGKEAQAL--FENLKGRFT 229

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  ++ +LL GW K  N+ EA   + EM+++  + P+ ++A+   L  L+R KQ  +A+
Sbjct: 230 PNLRTYTVLLNGWCKVKNLMEAGSVWNEMIDK-GFKPD-IVAHNIMLEGLLRSKQRSDAI 287

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM------------------- 315
           K   VMK +   P ++ ++  +  L + +    AV+ +  M                   
Sbjct: 288 KLFMVMKAKGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGF 347

Query: 316 -------MVF--------HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
                  MV+         G  PD LTYN + + + + K   +  + + +M ++  +PT 
Sbjct: 348 GNRKRMDMVYDLLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTI 407

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 420
                 +         E+   +W+ +   G  P + S   L+ GL + GR  +  ++ EE
Sbjct: 408 HTYNMIMKSYFQTRNYEMGRAVWDEMSRKGFCPDDNSYTVLIGGLISQGRSGEACKYLEE 467

Query: 421 MLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTS 461
           ML + +   ++  +K             DI + L +R K S
Sbjct: 468 MLEKGMKAPQLDYNKFGADLSRGGNP--DILEELAQRLKFS 506


>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 171/380 (45%), Gaps = 12/380 (3%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLG 124
           D+E  L+      + DLV +VL+   +   SA  FF WA R  G   S  +++++VD+LG
Sbjct: 67  DLEVGLSSFSSNVSTDLVEQVLKRCKNIAFSAHRFFLWAKRIPGFEPSDDSYHIVVDILG 126

Query: 125 KNGRFEQMWNAVRVMKE--DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
            +G+F  +W+ +  ++E    V++   F  +F +Y  A    +A+ +F+ M   G+   V
Sbjct: 127 SSGQFAILWDFLIEIRETRSSVITHELFWHVFTAYSRADLPQDAIRAFNRMGEFGIRAGV 186

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             ++ LL  +C++++  + A +F ++VK + +P   +++IL  GW   G+   A K F E
Sbjct: 187 DDLDKLLYTLCKRKH-VAHAQQFFDKVKSVFNPSVKTYSILTRGWGVVGDSNNAQKVFDE 245

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M ER       VLAY + L  L +G + DEA K    M      P    +S  +    + 
Sbjct: 246 MRER--GCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTYSIFIRSSCQE 303

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
           ND  H V             P+  TYN + + L K++ V E  +   EMI+    P   +
Sbjct: 304 ND-LHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMIERGVTPDTWS 362

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
                    D  E   A+ +   +  +  +P + + N +L  L  +GR        E M 
Sbjct: 363 YNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANEVWESMG 422

Query: 423 NR----RILIYEVTMHKLKK 438
            R     +  Y V +H   K
Sbjct: 423 KRGFYPSVSTYAVMIHGFCK 442



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 102/253 (40%), Gaps = 47/253 (18%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+ T++ +   +   G  + A   FD M   G   DV+A NSLL A+C+   +      F
Sbjct: 219 SVKTYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMF 278

Query: 206 LNRVKKIVDPDGDSFAI-----------------------------------LLEGWEKE 230
           L      VDPD D+++I                                   +++   K+
Sbjct: 279 LEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKD 338

Query: 231 GNVEEANKTFGEMVERF----EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
            NVEEA +   EM+ER      W+   + AY           +V+ AL  ++ M  + C 
Sbjct: 339 QNVEEAYQILDEMIERGVTPDTWSYNAIQAYHC------DHSEVNSALNLVKRMDRDKCV 392

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK-RVHEVE 345
           P    ++  L +LV++     A ++W+ M    G +P   TY ++     K K ++ E  
Sbjct: 393 PDKHTYNMVLKLLVRVGRFDRANEVWESMGK-RGFYPSVSTYAVMIHGFCKKKWKLEEAC 451

Query: 346 KFFHEMIKNEWQP 358
           K+F  MI     P
Sbjct: 452 KYFEMMIDEGIPP 464


>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62470, mitochondrial; Flags: Precursor
 gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
 gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
 gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/444 (22%), Positives = 200/444 (45%), Gaps = 43/444 (9%)

Query: 56  ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS- 112
           +C+++    A   ++E+ L    +  + DL+ EVL+    +   A  FF WA   Q  + 
Sbjct: 134 VCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAH 193

Query: 113 -PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
               +N M+ +L K  +FE M + +  M   G+L++ TF     ++  A +  +AV  F+
Sbjct: 194 DSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFE 253

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M  +  +  V  +N LL ++ R +     A    +++K+   P+  ++ +LL GW +  
Sbjct: 254 LMKKYKFKIGVETINCLLDSLGRAK-LGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVR 312

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ EA + + +M+++    P+ ++A+   L  L+R ++  +A+K   VMK +   P ++ 
Sbjct: 313 NLIEAARIWNDMIDQ-GLKPD-IVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRS 370

Query: 292 FSNALDILVKLNDSTHAVQLWDIM----------------------------------MV 317
           ++  +    K +    A++ +D M                                  M 
Sbjct: 371 YTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQ 430

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
             G  PD  TYN + + +   K      + +++MI+NE +P+       +     A   E
Sbjct: 431 EKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYE 490

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437
           +   +W  +++ GI P + S   L+ GL   G+  +  R+ EEML++ +    +  +K  
Sbjct: 491 MGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFA 550

Query: 438 KAFYNESRSMRDIFDSLERRCKTS 461
             F+   +   +IF+ L +R K S
Sbjct: 551 ADFHRGGQP--EIFEELAQRAKFS 572


>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 171/380 (45%), Gaps = 12/380 (3%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLG 124
           D+E  L+      + DLV +VL+   +   SA  FF WA R  G   S  +++++VD+LG
Sbjct: 67  DLEVGLSSFSSNVSTDLVEQVLKRCKNIAFSAHRFFLWAKRIPGFEPSDDSYHIVVDILG 126

Query: 125 KNGRFEQMWNAVRVMKE--DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
            +G+F  +W+ +  ++E    V++   F  +F +Y  A    +A+ +F+ M   G+   V
Sbjct: 127 GSGQFAILWDFLIEIRETRSSVITHELFWHVFTAYSRADLPQDAIRAFNRMGEFGIRAGV 186

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             ++ LL  +C++++  + A +F ++VK + +P   +++IL  GW   G+   A K F E
Sbjct: 187 DDLDKLLYTLCKRKH-VAHAQQFFDKVKSVFNPSVKTYSILTRGWGVVGDSNNAQKVFDE 245

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M ER       VLAY + L  L +G + DEA K    M      P    +S  +    + 
Sbjct: 246 MRER--GCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTYSIFIRSSCQE 303

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
           ND  H V             P+  TYN + + L K++ V E  +   EMI+    P   +
Sbjct: 304 ND-LHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMIERGVTPDTWS 362

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
                    D  E   A+ +   +  +  +P + + N +L  L  +GR        E M 
Sbjct: 363 YNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANEVWESMG 422

Query: 423 NR----RILIYEVTMHKLKK 438
            R     +  Y V +H   K
Sbjct: 423 KRGFYPSVSTYAVMIHGFCK 442



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 102/253 (40%), Gaps = 47/253 (18%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+ T++ +   +   G  + A   FD M   G   DV+A NSLL A+C+   +      F
Sbjct: 219 SVKTYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMF 278

Query: 206 LNRVKKIVDPDGDSFAI-----------------------------------LLEGWEKE 230
           L      VDPD D+++I                                   +++   K+
Sbjct: 279 LEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKD 338

Query: 231 GNVEEANKTFGEMVERF----EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
            NVEEA +   EM+ER      W+   + AY           +V+ AL  ++ M  + C 
Sbjct: 339 QNVEEAYQILDEMIERGVTPDTWSYNAIQAYHC------DHSEVNSALNLVKRMDRDKCV 392

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK-RVHEVE 345
           P    ++  L +LV++     A ++W+ M    G +P   TY ++     K K ++ E  
Sbjct: 393 PDKHTYNMVLKLLVRVGRFDRANEVWESMGK-RGFYPSVSTYAVMIHGFCKKKWKLEEAC 451

Query: 346 KFFHEMIKNEWQP 358
           K+F  MI     P
Sbjct: 452 KYFEMMIDEGIPP 464


>gi|242064594|ref|XP_002453586.1| hypothetical protein SORBIDRAFT_04g008535 [Sorghum bicolor]
 gi|241933417|gb|EES06562.1| hypothetical protein SORBIDRAFT_04g008535 [Sorghum bicolor]
          Length = 277

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 111/223 (49%), Gaps = 15/223 (6%)

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGRGQ----RLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           V +VL+LSY  P +A  FF  AG         SPY+WNL++D+LG N  F +MW  V  M
Sbjct: 25  VEQVLRLSYAHPCAAAAFFHLAGHWHLGHDNHSPYSWNLVIDILGTNRIFTRMWETVDSM 84

Query: 140 KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-Q 198
               +LSL TFAS+F S   +          D M  + +  D   +NSLLSA+CR     
Sbjct: 85  HSRWLLSLDTFASVFSSLAASPSCSMLKAFMDDMPHYDMACDTTTLNSLLSALCRANRLD 144

Query: 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
            +RA+  + R +    PD DS+AILLE              F EMV     +P++V AY+
Sbjct: 145 DARAVILVARAEVGTLPDADSYAILLECARL-----PPTHVFDEMVRDIGGDPDNVPAYD 199

Query: 259 TFLITLIRGK---QVDEALKFLRVMKGENCFPTL--KFFSNAL 296
            FL T++       + +A  +L  +K  +C P    +FF  AL
Sbjct: 200 AFLTTIVSSNYSMALPKATYYLDFLKRHDCLPGTGQRFFHAAL 242


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 166/385 (43%), Gaps = 47/385 (12%)

Query: 98  AVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIF 154
           A+ FF WA    G    P  +N M+D+ GK   F+  W  + +MK   V +S+ TF+ + 
Sbjct: 125 ALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSILI 184

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
             Y  AG   EAV +F+ M  +  + D +A + L+S +CR+   T  A  F + +K   +
Sbjct: 185 RRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATE-AQSFFDSLKDKFE 243

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD   +  L+ GW + GN+ EA + F EM  +      +V  Y   +  L R  Q+  A 
Sbjct: 244 PDVIVYTNLVRGWCRAGNIPEAERVFTEM--KVAGCMPNVYTYTIVIDALCRCGQITRAH 301

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
                M    C P    F+N L + VK   +   +Q+++ M    G  PD++TYN + E 
Sbjct: 302 DVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRM-GCPPDTVTYNFLIES 360

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTP----------------------------LNC-AT 365
             K+  + E  K  + M+K    P                              L C A 
Sbjct: 361 HCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKAN 420

Query: 366 AIT------MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
            +T      M +D    ++ +++   + E+ + P   +   L+     +G  ++  +F  
Sbjct: 421 TVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVLIAMYCGMGHWNNAYKFFR 480

Query: 420 EMLNRRIL-----IYEVTMHKLKKA 439
           EM+  + L     +YE  + +L+KA
Sbjct: 481 EMVEEKCLKPSLPVYEKVLQQLRKA 505



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/251 (20%), Positives = 106/251 (42%), Gaps = 7/251 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y + +++D L + G+  +  +    M + G   +  TF ++   +  AG+ ++ +  ++ 
Sbjct: 282 YTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQ 341

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G   D V  N L+ + C+  N    AL+ LN  VKK   P+  +F  L     K  
Sbjct: 342 MKRMGCPPDTVTYNFLIESHCKDGN-LDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLR 400

Query: 232 NVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           +V  A++ + +M E + + N    + Y   +   +  K  D  LK  + M  ++  P + 
Sbjct: 401 DVNGAHRLYAKMKELKCKAN---TVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVN 457

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +   + +   +    +A + +  M+      P    Y  + + L K  ++ + E+    
Sbjct: 458 TYCVLIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEELVAV 517

Query: 351 MIKNEWQPTPL 361
           M+   +   PL
Sbjct: 518 MVDRGFATRPL 528


>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 549

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 190/435 (43%), Gaps = 50/435 (11%)

Query: 56  ICEILA--HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRL 111
           + EIL   +  +D +  AL   G+ PT +L+ ++L    +    A+  F WA    G   
Sbjct: 104 VSEILKKHYPCTDSVVQALNDCGVNPTNNLISQLLNRFCNDWVPALGLFTWAKHQTGYVH 163

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
            P  ++LMVD+LG+  +F  MW  V+ M+  +G +SL T   +      AG + +AV +F
Sbjct: 164 PPDLYDLMVDILGRRKKFSFMWELVKEMENLEGYVSLVTMKKVMRRLARAGNFQDAVEAF 223

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             +   GV +D+ A+N L+ A+ + E     A       K  +  D  SF ILL G+ K 
Sbjct: 224 RGIEKLGVRKDIEALNVLMDALVK-EGSVEHAYSAFMEFKDSIHVDFQSFNILLHGYCKA 282

Query: 231 GNVEEANKTFGEMVER-FEWN--------------------------------PEHVLAY 257
             +++A K   EM ++ F+ N                                  +V+ Y
Sbjct: 283 RKLDDARKIMDEMDKQGFQPNVVSYTCFIELYCKLKDFRNVEAIFSEMQEKSCKPNVITY 342

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM-- 315
             F+  L + KQV++AL+   +MK   C P   F+S+ + +L +   S      WD+   
Sbjct: 343 TIFMHALGKAKQVNKALEVYEMMKSNCCVPDASFYSSLIFVLTQ---SGRLKDAWDVFED 399

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           M   G  PD LTYN +      +       K    M ++  +P     A  + M      
Sbjct: 400 MKKQGVSPDLLTYNTMITSACTHLEEENALKLLRRMEEDSCKPDIQTYAPLLKMCCRKKR 459

Query: 376 PEIAIEIWNYILENGILPLEASANELLV-GLRNLGRLSDVRRFAEEMLNRRIL----IYE 430
            ++   + N++ +N I  ++     LLV GL   G+L     F EEM+ + ++     Y+
Sbjct: 460 IKVLKFLLNHMFKNNI-SIDLGTYVLLVGGLCKSGKLELACSFFEEMVMKGLIPRDRTYK 518

Query: 431 VTMHKLKKAFYNESR 445
           + + +L++    E++
Sbjct: 519 MLVEELEQNNLTEAK 533


>gi|356561933|ref|XP_003549231.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g62470, mitochondrial-like [Glycine max]
          Length = 510

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 167/351 (47%), Gaps = 8/351 (2%)

Query: 56  ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRL 111
           +C+++    A   ++E  L   G+  + DLV +VLQ    +   A  FF  AG+  G   
Sbjct: 39  VCKVIDELFALDRNMEVVLDECGVRLSHDLVVDVLQRFKHARKPAFRFFCXAGKRPGFAH 98

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
               +N M+ VLG+  +FE M   +  M E G+L++ TF+    ++  A +  + V  FD
Sbjct: 99  DSRTYNFMMCVLGRTRQFETMVAKLEEMGEKGLLTMETFSIAIKAFAEAKQRKKEVGIFD 158

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M  +G +  V  +N LL ++         A     ++K    P   ++ ILL GW +  
Sbjct: 159 LMKKYGFKVGVDVINFLLDSL-STAKLGKEAQAVFEKLKDRFTPSLQTYTILLSGWCRLK 217

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ EA + + EM++R  +NP+ ++A+   L  L++ K+  +A+K   +MK +   P ++ 
Sbjct: 218 NLLEAGRVWNEMIDR-GFNPD-IVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRS 275

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +    K      A++ +D+ MV  G  PD+  Y  +     + K++  V     EM
Sbjct: 276 YTIMIQDFCKQKLMGEAIEYFDV-MVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLKEM 334

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
            +    P        I ++     P+ A+ I+  ++++GI P   + N ++
Sbjct: 335 RERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIM 385


>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
          Length = 572

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 178/374 (47%), Gaps = 13/374 (3%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYA 115
           ++    SSD+I     C  +  +  LVH++L    D   SA+   +WA   +G + S  A
Sbjct: 133 DVFKRLSSDEI-----CKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDA 187

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +++ VD+LGK  ++++M   V  M+ D +++L T A I   + GAG+++EAV  FD +  
Sbjct: 188 YDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGE 247

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G+E++  ++N LL  +C+ E +  +A   L ++K  + P+  +F I + GW K   VEE
Sbjct: 248 FGLEKNTESMNLLLDTLCK-EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEE 306

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A  T  EM +   + P  V++Y T +    +  +  +  + L  M+     P    ++  
Sbjct: 307 ALWTIQEM-KGHGFRP-CVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTI 364

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH-EMIKN 354
           +  L    +   A+++    M   G  PDSL YN +   L +  R+ E E+ F  EM + 
Sbjct: 365 MSSLNAQKEFEEALRV-ATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPEL 423

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL-PLEASANELLVGLRNLGRLSD 413
                     + I M    DE + AIE+   +  + +  P   +   LL      G + +
Sbjct: 424 GVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVE 483

Query: 414 VRRFAEEMLNRRIL 427
           V +  +EM+ +  L
Sbjct: 484 VGKLLKEMVTKHHL 497



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 102/284 (35%), Gaps = 39/284 (13%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           NL++D L K  R EQ    +  +K     +  TF      +C A + +EA+ +   M  H
Sbjct: 258 NLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGH 317

Query: 177 GVEQDVVAVNSLLSAICRQ----------------------------------ENQTSRA 202
           G    V++  +++   C+Q                                  + +   A
Sbjct: 318 GFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEA 377

Query: 203 LEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVLAYETF 260
           L    R+K+    PD   +  L+    + G +EEA + F   VE  E     +   Y + 
Sbjct: 378 LRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVF--RVEMPELGVSINTSTYNSM 435

Query: 261 LITLIRGKQVDEALKFLRVMKGEN-CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH 319
           +       + D+A++ L+ M+  N C P +  +   L    K  D     +L   M+  H
Sbjct: 436 IAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKH 495

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
               D  TY  + + L +          F EMI  +  P    C
Sbjct: 496 HLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHRTC 539


>gi|15228788|ref|NP_191813.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214682|sp|Q3EAF8.1|PP294_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62540, mitochondrial; Flags: Precursor
 gi|332646841|gb|AEE80362.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/444 (22%), Positives = 200/444 (45%), Gaps = 43/444 (9%)

Query: 56  ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS- 112
           +C+++    A   ++E+ L    +  + DL+ EVL+    +   A  FF WA   Q  + 
Sbjct: 134 VCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAH 193

Query: 113 -PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
               +N M+ +L K  +FE M + +  M   G+L++ TF     ++  A +  +AV  F+
Sbjct: 194 ASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFE 253

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M  +  +  V  +N LL ++ R +     A    +++K+   P+  ++ +LL GW +  
Sbjct: 254 LMKKYKFKIGVETINCLLDSLGRAK-LGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVR 312

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ EA + + +M++     P+ ++A+   L  L+R  +  +A+K   VMK +   P ++ 
Sbjct: 313 NLIEAARIWNDMIDH-GLKPD-IVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRS 370

Query: 292 FSNALDILVKLNDSTHAVQLWDIM----------------------------------MV 317
           ++  +    K +    A++ +D M                                  M 
Sbjct: 371 YTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQ 430

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
             G  PD  TYN + + +   K      + +++MI+NE +P+       +     A   E
Sbjct: 431 EKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYE 490

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437
           +   +W+ +++ GI P + S   L+ GL + G+  +  R+ EEML++ +    +  +K  
Sbjct: 491 MGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFA 550

Query: 438 KAFYNESRSMRDIFDSLERRCKTS 461
             F+   +   +IF+ L +R K S
Sbjct: 551 ADFHRGGQP--EIFEELAQRAKFS 572


>gi|15241508|ref|NP_196986.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173968|sp|Q9LEQ7.1|PP382_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g14820, mitochondrial; Flags: Precursor
 gi|9755750|emb|CAC01881.1| putative protein [Arabidopsis thaliana]
 gi|332004697|gb|AED92080.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/444 (22%), Positives = 200/444 (45%), Gaps = 43/444 (9%)

Query: 56  ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS- 112
           +C+++    A   ++E+ L    +  + DL+ EVL+    +   A  FF WA   Q  + 
Sbjct: 133 VCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAH 192

Query: 113 -PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
               +N M+ +L K  +FE M + +  M   G+L++ TF     ++  A +  +AV  F+
Sbjct: 193 DSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFE 252

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M  +  +  V  +N LL ++ R +     A    +++K+   P+  ++ +LL GW +  
Sbjct: 253 LMKKYKFKIGVETINCLLDSLGRAK-LGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVR 311

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ EA + + +M++     P+ ++A+   L  L+R  +  +A+K   VMK +   P ++ 
Sbjct: 312 NLIEAARIWNDMIDH-GLKPD-IVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRS 369

Query: 292 FSNALDILVKLNDSTHAVQLWDIM----------------------------------MV 317
           ++  +    K +    A++ +D M                                  M 
Sbjct: 370 YTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQ 429

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
             G  PD  TYN + + +   K      + +++MI+NE +P+       +     A   E
Sbjct: 430 EKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYE 489

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437
           +   +W+ +++ GI P + S   L+ GL + G+  +  R+ EEML++ +    +  +K  
Sbjct: 490 MGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFA 549

Query: 438 KAFYNESRSMRDIFDSLERRCKTS 461
             F+   +   +IF+ L +R K S
Sbjct: 550 ADFHRGGQP--EIFEELAQRAKFS 571


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 185/382 (48%), Gaps = 18/382 (4%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP++   VLQ   D P  A  FF+WAG   G + + Y   ++++   K  R E+   A R
Sbjct: 42  TPEVAGRVLQQVED-PDVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEE---AHR 97

Query: 138 VMKED-GVLSLPT---FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
           ++KE+   L  P    + ++ + +C AG+ D+A    D M   GV+ DV+  ++L+  +C
Sbjct: 98  LLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLC 157

Query: 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE----W 249
           R+  +   ALE    + +   P+  ++  ++ G  K   ++EA + F +M +R+E     
Sbjct: 158 RK-GRIDEALEQFKSMGEECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGC 216

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
            P+ V++Y T +  L + ++VD+A ++ + M+   C P +  +S+ +D L K++  +  +
Sbjct: 217 EPD-VISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECL 275

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           +L  + M   G   + + +N +   L KN    +  +FF  ++K+  +P  +    A+  
Sbjct: 276 ELL-LHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHG 334

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
           L  A   + A  I   ++E+ + P   + + ++ G    GR+         M+    + +
Sbjct: 335 LCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPH 394

Query: 430 EVTMHKLKKAFYNESRSMRDIF 451
            VT   L   F +E +  R+ F
Sbjct: 395 PVTFMTLLHGF-SEHKKSREAF 415



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 135/301 (44%), Gaps = 6/301 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +++ ++D L K  R ++ +   + M+  G   ++ T++S+ D  C   +  E +     M
Sbjct: 222 SYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHM 281

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
              G   +++  N++L A+ + + Q  +A +F  R +K    P+  ++ + + G  K G 
Sbjct: 282 KEKGFGINIIDFNAMLHALWKNDEQ-EKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGR 340

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V+EA +   EMVE  +  P+ V+ Y + +    +  ++D+A      M    C P    F
Sbjct: 341 VDEAYRILLEMVES-KVTPD-VITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTF 398

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
              L    +   S  A ++ +  MV  G  P   TYN++ +C+     V    + +H+M 
Sbjct: 399 MTLLHGFSEHKKSREAFRVHED-MVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMK 457

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           + + QP     A  I  L  A   + A E  + +  + ++P  A  + L+  L   G + 
Sbjct: 458 RKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVD 517

Query: 413 D 413
           +
Sbjct: 518 E 518



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 87/226 (38%), Gaps = 8/226 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+A +    C A + DEA    DVM    V  +    ++L+  +C+Q  +   A   L+ 
Sbjct: 467 TYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQ-GEVDEACSVLDN 525

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           V ++   P G++F IL+E        E A+K       R          Y   +  + + 
Sbjct: 526 VVEVGCQPLGETFKILVEELYLRKKWEAASKLL-----RSPGFVADAATYSLCVAEICKA 580

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            + DEA++ +  M  +   P    +   L  L  L+    A+  ++  M   G  P  +T
Sbjct: 581 GKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFE-KMASRGCAPGLVT 639

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
           Y ++           E  + F  M+   + P      T  + L DA
Sbjct: 640 YTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTLSSCLRDA 685


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 153/340 (45%), Gaps = 4/340 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDE 165
           RG   SP  +N+++D   K G  E+  + ++ M EDG V  + T+ ++ D  C +G+ +E
Sbjct: 74  RGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEE 133

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A++ F+ M   G   +  + N+++  +C+Q         F     + + PD  S+ IL++
Sbjct: 134 ALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILID 193

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K G + EA K F  M++     P  V  Y   +  +     +DEAL+  + M+ + C
Sbjct: 194 GLAKAGKLNEAYKLFRRMLDS-GITPSAV-TYNVVIHGMCLAYTLDEALELFKSMRSKGC 251

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P+   F+  +D   K      A +L    M   G  PD +TY+ +   L    RV +  
Sbjct: 252 RPSRFTFNILIDAHCKRGKMDEAFRLLK-RMTDDGHVPDVVTYSTLISGLCSIARVDDAR 310

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
               +M+K + +PT +   T I  L  A   + A E+ + ++ +G  P   + N L+ G 
Sbjct: 311 HLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 370

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
              G+    R    +M+ R +    VT   L       +R
Sbjct: 371 CRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANR 410



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 160/359 (44%), Gaps = 17/359 (4%)

Query: 75  TGIIP---TPDLVHEVLQLSYDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFE 130
           +GI P   T ++V   + L+Y +   A++ F+    +G R S + +N+++D   K G+ +
Sbjct: 214 SGITPSAVTYNVVIHGMCLAY-TLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMD 272

Query: 131 QMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
           + +  ++ M +DG V  + T++++    C   + D+A    + M     +  VV  N+L+
Sbjct: 273 EAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLI 332

Query: 190 SAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
             +C+   +   A E L+  V     PD  ++  L+ G  + G  E A +   +MV R  
Sbjct: 333 HGLCKA-GRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVAR-- 389

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
               +V+ Y   +  L +  ++ EA      MK   C P L  ++  +            
Sbjct: 390 GLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGG 449

Query: 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIK---NKRVHEVEKFFHEMIKNE-WQPTPLNCA 364
           ++L+   MV  G  PD + Y  +   L K   + R  E+ +   E +++E W        
Sbjct: 450 LKLFG-EMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYR-- 506

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
            A+  LLDA + E+A+     ++  G LP       L+ GL   G+  + R   EE+++
Sbjct: 507 FAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMD 565



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 156/355 (43%), Gaps = 16/355 (4%)

Query: 109 QRLSPYAWN--LMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           + +SP +W+  +++D L K G+     +  + +   GV  S   + S+    C A  +D+
Sbjct: 4   RNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDD 63

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFA 221
           A   F  M+  G     V  N ++ A C++        E  + +KK+++    PD  ++ 
Sbjct: 64  ARELFADMNRRGCPPSPVTYNVIIDASCKR----GMLEEACDLIKKMIEDGHVPDVVTYN 119

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            +++G  K G VEEA   F EM ER    P    ++ T ++ L +  ++D+A +    M+
Sbjct: 120 TVMDGLCKSGRVEEALLLFNEM-ERLGCTPNR-RSHNTIILGLCQQSKIDQACQVFHEME 177

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
             +  P    +   +D L K      A +L+   M+  G  P ++TYN++   +     +
Sbjct: 178 ARDIPPDSWSYGILIDGLAKAGKLNEAYKLFR-RMLDSGITPSAVTYNVVIHGMCLAYTL 236

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E  + F  M     +P+       I       + + A  +   + ++G +P   + + L
Sbjct: 237 DEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTL 296

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 454
           + GL ++ R+ D R   E+M+ R+     VT + L        R    R++ D++
Sbjct: 297 ISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM 351



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 118/301 (39%), Gaps = 5/301 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           ++  + D    AGK +EA   F  M   G+    V  N ++  +C        ALE    
Sbjct: 187 SYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYT-LDEALELFKS 245

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++ K   P   +F IL++   K G ++EA +    M +  + +   V+ Y T +  L   
Sbjct: 246 MRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTD--DGHVPDVVTYSTLISGLCSI 303

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +VD+A   L  M    C PT+   +  +  L K      A ++ D  MV  G  PD +T
Sbjct: 304 ARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLD-AMVSSGQSPDVVT 362

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +     +  +     +   +M+     P  +     ++ L  A+    A  ++  + 
Sbjct: 363 YNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMK 422

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
            +G  P   +   L++G  + G++    +   EM+   I    V    L        RS 
Sbjct: 423 SSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSA 482

Query: 448 R 448
           R
Sbjct: 483 R 483


>gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana]
          Length = 508

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 178/374 (47%), Gaps = 13/374 (3%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYA 115
           ++    SSD+I     C  +  +  LVH++L    D   SA+   +WA   +G + S  A
Sbjct: 69  DVFKRLSSDEI-----CKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDA 123

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +++ VD+LGK  ++++M   V  M+ D +++L T A I   + GAG+++EAV  FD +  
Sbjct: 124 YDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGE 183

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G+E++  ++N LL  +C+ E +  +A   L ++K  + P+  +F I + GW K   VEE
Sbjct: 184 FGLEKNTESMNLLLDTLCK-EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEE 242

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A  T  EM +   + P  V++Y T +    +  +  +  + L  M+     P    ++  
Sbjct: 243 ALWTIQEM-KGHGFRP-CVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTI 300

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH-EMIKN 354
           +  L    +   A+++    M   G  PDSL YN +   L +  R+ E E+ F  EM + 
Sbjct: 301 MSSLNAQKEFEEALRV-ATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPEL 359

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL-PLEASANELLVGLRNLGRLSD 413
                     + I M    DE + AIE+   +  + +  P   +   LL      G + +
Sbjct: 360 GVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVE 419

Query: 414 VRRFAEEMLNRRIL 427
           V +  +EM+ +  L
Sbjct: 420 VGKLLKEMVTKHHL 433



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 109/304 (35%), Gaps = 40/304 (13%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156
           AV  F   G  G   +  + NL++D L K  R EQ    +  +K     +  TF      
Sbjct: 174 AVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHG 233

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ--------------------- 195
           +C A + +EA+ +   M  HG    V++  +++   C+Q                     
Sbjct: 234 WCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPN 293

Query: 196 -------------ENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFG 241
                        + +   AL    R+K+    PD   +  L+    + G +EEA + F 
Sbjct: 294 SITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVF- 352

Query: 242 EMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGEN-CFPTLKFFSNALDIL 299
             VE  E     +   Y + +       + D+A++ L+ M+  N C P +  +   L   
Sbjct: 353 -RVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSC 411

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            K  D     +L   M+  H    D  TY  + + L +          F EMI  +  P 
Sbjct: 412 FKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPR 471

Query: 360 PLNC 363
              C
Sbjct: 472 HRTC 475


>gi|18396782|ref|NP_566222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|79312733|ref|NP_001030630.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546763|sp|Q9M8W9.2|PP211_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04130, mitochondrial; Flags: Precursor
 gi|332640519|gb|AEE74040.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332640520|gb|AEE74041.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 508

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 178/374 (47%), Gaps = 13/374 (3%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYA 115
           ++    SSD+I     C  +  +  LVH++L    D   SA+   +WA   +G + S  A
Sbjct: 69  DVFKRLSSDEI-----CKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDA 123

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +++ VD+LGK  ++++M   V  M+ D +++L T A I   + GAG+++EAV  FD +  
Sbjct: 124 YDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGE 183

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G+E++  ++N LL  +C+ E +  +A   L ++K  + P+  +F I + GW K   VEE
Sbjct: 184 FGLEKNTESMNLLLDTLCK-EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEE 242

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A  T  EM +   + P  V++Y T +    +  +  +  + L  M+     P    ++  
Sbjct: 243 ALWTIQEM-KGHGFRP-CVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTI 300

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH-EMIKN 354
           +  L    +   A+++    M   G  PDSL YN +   L +  R+ E E+ F  EM + 
Sbjct: 301 MSSLNAQKEFEEALRV-ATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPEL 359

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL-PLEASANELLVGLRNLGRLSD 413
                     + I M    DE + AIE+   +  + +  P   +   LL      G + +
Sbjct: 360 GVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVE 419

Query: 414 VRRFAEEMLNRRIL 427
           V +  +EM+ +  L
Sbjct: 420 VGKLLKEMVTKHHL 433



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 109/304 (35%), Gaps = 40/304 (13%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156
           AV  F   G  G   +  + NL++D L K  R EQ    +  +K     +  TF      
Sbjct: 174 AVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHG 233

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ--------------------- 195
           +C A + +EA+ +   M  HG    V++  +++   C+Q                     
Sbjct: 234 WCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPN 293

Query: 196 -------------ENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFG 241
                        + +   AL    R+K+    PD   +  L+    + G +EEA + F 
Sbjct: 294 SITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVF- 352

Query: 242 EMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGEN-CFPTLKFFSNALDIL 299
             VE  E     +   Y + +       + D+A++ L+ M+  N C P +  +   L   
Sbjct: 353 -RVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSC 411

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            K  D     +L   M+  H    D  TY  + + L +          F EMI  +  P 
Sbjct: 412 FKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPR 471

Query: 360 PLNC 363
              C
Sbjct: 472 HRTC 475


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 152/340 (44%), Gaps = 4/340 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDE 165
           RG   SP  +N+M+D   K G  E+  + ++ M EDG V  + T+ ++ D  C + + +E
Sbjct: 74  RGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEE 133

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A++ F+ M   G   +  + N+++  +C+Q         F     K + PD  S+ IL++
Sbjct: 134 ALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILID 193

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K G + EA K F  M++     P  V  Y   +  +     +DEAL+  + M+ + C
Sbjct: 194 GLAKAGKLNEAYKLFQRMLDS-GITPSAV-TYNVVIHGMCLAYTLDEALELFKSMRSKGC 251

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P+   F+  +D   K      A +L    M   G  PD +TY+ +   L    RV +  
Sbjct: 252 RPSRFTFNILIDAHCKRGKLDEAFRLLK-RMTDDGHVPDVVTYSTLISGLCSIARVDDAR 310

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
               +M+K + +PT +   T I  L  A   + A E+ + ++ +G  P   + N L+ G 
Sbjct: 311 HLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGH 370

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
              G+    R    +M+ R +    VT   L       +R
Sbjct: 371 CRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANR 410



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 156/355 (43%), Gaps = 16/355 (4%)

Query: 109 QRLSPYAWN--LMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           + +SP +W+  +++D L K G+     N  + +   GV  S   + S+    C A  +D+
Sbjct: 4   RNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDD 63

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFA 221
           A   F  M+  G     V  N ++ A C++        E  + +KK+++    PD  ++ 
Sbjct: 64  ARELFADMNRRGCPPSPVTYNVMIDASCKR----GMLEEACDLIKKMIEDGHVPDVVTYN 119

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            +++G  K   VEEA   F EM ER    P    ++ T ++ L +  ++D+A +    M+
Sbjct: 120 TVMDGLCKSSRVEEALLLFNEM-ERLGCTPNR-RSHNTIILGLCQQSKIDQACQVFHEME 177

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            ++  P    +   +D L K      A +L+   M+  G  P ++TYN++   +     +
Sbjct: 178 AKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQ-RMLDSGITPSAVTYNVVIHGMCLAYTL 236

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E  + F  M     +P+       I       + + A  +   + ++G +P   + + L
Sbjct: 237 DEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTL 296

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 454
           + GL ++ R+ D R   E+M+ R+     VT + L        R    R++ D++
Sbjct: 297 ISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM 351



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 160/359 (44%), Gaps = 17/359 (4%)

Query: 75  TGIIP---TPDLVHEVLQLSYDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFE 130
           +GI P   T ++V   + L+Y +   A++ F+    +G R S + +N+++D   K G+ +
Sbjct: 214 SGITPSAVTYNVVIHGMCLAY-TLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLD 272

Query: 131 QMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
           + +  ++ M +DG V  + T++++    C   + D+A    + M     +  VV  N+L+
Sbjct: 273 EAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLI 332

Query: 190 SAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
             +C+   +   A E L+  V     PD  ++  L+ G  + G  E A +   +MV R  
Sbjct: 333 HGLCKA-GRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVAR-- 389

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
               +V+ Y   +  L +  ++ EA      MK   C P L  ++  +            
Sbjct: 390 GLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGG 449

Query: 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIK---NKRVHEVEKFFHEMIKNE-WQPTPLNCA 364
           ++L+   MV  G  PD + Y  +   L K   + R  E+ +   E +++E W        
Sbjct: 450 LKLFG-EMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYR-- 506

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
            A+  LL+A + E+A+     ++  G LP       L+ GL   G+  + R   EE+++
Sbjct: 507 FAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMD 565



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 119/303 (39%), Gaps = 5/303 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           ++  + D    AGK +EA   F  M   G+    V  N ++  +C        ALE    
Sbjct: 187 SYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYT-LDEALELFKS 245

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++ K   P   +F IL++   K G ++EA +    M +  + +   V+ Y T +  L   
Sbjct: 246 MRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTD--DGHVPDVVTYSTLISGLCSI 303

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +VD+A   L  M    C PT+   +  +  L K      A ++ D  MV  G  PD +T
Sbjct: 304 ARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLD-AMVSSGQSPDVVT 362

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +     +  +     +   +M+     P  +     ++ L  A+    A  ++  + 
Sbjct: 363 YNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMK 422

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
            +G  P   +   L++G  + G++    +   EM+   I    V    L        RS 
Sbjct: 423 SSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSA 482

Query: 448 RDI 450
           R +
Sbjct: 483 RAL 485


>gi|357440039|ref|XP_003590297.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479345|gb|AES60548.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 661

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 178/377 (47%), Gaps = 13/377 (3%)

Query: 64  SSDDIESAL----ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWN 117
           S DDI  +L       GI  + +L++ +L    D   SA+  FRWAG       S  +++
Sbjct: 65  SEDDILQSLISDEGVNGIHLSENLINRLLFRYKDDWKSALAIFRWAGSHSNFKHSQQSYD 124

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +MVD+LG+    ++M   +  M+++ +++L T A +   + GA ++ +AV  FD +   G
Sbjct: 125 MMVDILGRMKAMDKMREILEEMRQESLITLNTIAKVMRRFVGARQWKDAVRIFDDLQFLG 184

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           +E++  ++N LL  +C+ E    +A E    +K  + P+  +F IL+ GW     VEEA+
Sbjct: 185 LEKNTESMNVLLDTLCK-EKFVEQAREIYLELKHYIAPNAHTFNILIHGWCNIRRVEEAH 243

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
            T  EM + +   P  V++Y T +    + +  D     L  M+ +NC P +  ++  + 
Sbjct: 244 WTIQEM-KGYGCRP-CVISYSTIIQCYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIMC 301

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH-EMIKNEW 356
            L K      A+Q+ + M    G  PD+L +N +   L +  R+ +    F   M K   
Sbjct: 302 ALAKAEKFEEALQVVERMNAV-GCRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASV 360

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
            P      + I+M     + E A  I   + ++G+   +      L+  ++  ++ ++  
Sbjct: 361 APNTSTYNSMISMFCYYAQEERAFGILKEMEKSGLCKPDIQTYHPLI--KSCFKMREIDT 418

Query: 417 FAEEMLNRRILIYEVTM 433
           +  ++LN  +  Y + +
Sbjct: 419 WLNDILNDMVNKYHIGL 435


>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
          Length = 554

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 162/366 (44%), Gaps = 12/366 (3%)

Query: 34  RPTRPRFPTHLDAPY---ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQL 90
           RP  P   +H DA +   I   +RI+      AS + I  A+ C  +  T  LV ++L  
Sbjct: 84  RPGFPATASHEDAEFEADIDEVSRILSA--RFASPEAIMIAMDCCSVRVTGCLVDKILTR 141

Query: 91  SYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSL 147
             +   +A  FF W G   G      +++LMVD+LGK  +F+ MW  +  M E  G++SL
Sbjct: 142 FSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSL 201

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
            T   +     GA ++ EA+ +F  M   GV +D  A+N LL  +C+ E    RA     
Sbjct: 202 MTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCK-ERSVKRARGVFQ 260

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            ++  + PD +SF  L+ GW K   ++EA  T  EM ++  ++P  V+ Y + +      
Sbjct: 261 ELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEM-KQHGFSPS-VVTYTSLVEAYCME 318

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           K        L  M+   C P +  ++  +  L K   +  A+  +D +    G  PD+  
Sbjct: 319 KDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKE-DGVAPDASF 377

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +   L +  R+ +      EM      P      T I+   D  + E A+++   + 
Sbjct: 378 YNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKME 437

Query: 388 ENGILP 393
           E    P
Sbjct: 438 EQSCNP 443



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 108/247 (43%), Gaps = 8/247 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N +V    K    ++  + +  MK+ G   S+ T+ S+ ++YC    +       D M
Sbjct: 272 SFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEM 331

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGN 232
                  +VV    L+ A+  +  +T  AL+  +++K+  V PD   +  L+    + G 
Sbjct: 332 RKRRCPPNVVTYTILMHAL-GKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGR 390

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +E+A     EM  R      +V  + T +       Q + ALK L  M+ ++C P +K +
Sbjct: 391 LEDAYSVVEEM--RTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTY 448

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAF-PDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +  L +  K       + L+ +  +F     PD  TY ++   L +N +V +   F  EM
Sbjct: 449 TPLLKLCCKRQ--WVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEM 506

Query: 352 IKNEWQP 358
           +   + P
Sbjct: 507 VSKGFAP 513



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 9/202 (4%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKY 163
           R +R  P    + +++  LGK GR  +  +    +KEDGV    +F +      G AG+ 
Sbjct: 332 RKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRL 391

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
           ++A    + M   G+  +V   N+L+SA C   +Q   AL+ L ++ ++  +PD  ++  
Sbjct: 392 EDAYSVVEEMRTTGIAPNVTTFNTLISAAC-DHSQAENALKLLVKMEEQSCNPDIKTYTP 450

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT-LIRGKQVDEALKFLRVMK 281
           LL+   K   V+        M  R + +P+   +  T L++ L R  +V ++  FL  M 
Sbjct: 451 LLKLCCKRQWVKILLFLVCHMF-RKDISPD--FSTYTLLVSWLCRNGKVAQSCLFLEEMV 507

Query: 282 GENCFPTLKFFSNALDILVKLN 303
            +   P  + F   ++ L K N
Sbjct: 508 SKGFAPKQETFDLVMEKLEKRN 529


>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
 gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
          Length = 613

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 162/366 (44%), Gaps = 12/366 (3%)

Query: 34  RPTRPRFPTHLDAPY---ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQL 90
           RP  P   +H DA +   I   +RI+    A  S + I  A+ C  +  T  LV ++L  
Sbjct: 143 RPGFPATASHEDAEFEADIDEVSRILSARFA--SPEAIMIAMDCCSVRVTGCLVDKILTR 200

Query: 91  SYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSL 147
             +   +A  FF W G   G      +++LMVD+LGK  +F+ MW  +  M E  G++SL
Sbjct: 201 FSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSL 260

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
            T   +     GA ++ EA+ +F  M   GV +D  A+N LL  +C+ E    RA     
Sbjct: 261 MTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCK-ERSVKRARGVFQ 319

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            ++  + PD +SF  L+ GW K   ++EA  T  EM ++  ++P  V+ Y + +      
Sbjct: 320 ELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEM-KQHGFSPS-VVTYTSLVEAYCME 377

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           K        L  M+   C P +  ++  +  L K   +  A+  +D +    G  PD+  
Sbjct: 378 KDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKE-DGVAPDASF 436

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +   L +  R+ +      EM      P      T I+   D  + E A+++   + 
Sbjct: 437 YNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKME 496

Query: 388 ENGILP 393
           E    P
Sbjct: 497 EQSCNP 502



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 108/247 (43%), Gaps = 8/247 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N +V    K    ++  + +  MK+ G   S+ T+ S+ ++YC    +       D M
Sbjct: 331 SFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEM 390

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGN 232
                  +VV    L+ A+ +   +T  AL+  +++K+  V PD   +  L+    + G 
Sbjct: 391 RKRRCPPNVVTYTILMHALGKA-GRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGR 449

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +E+A     EM  R      +V  + T +       Q + ALK L  M+ ++C P +K +
Sbjct: 450 LEDAYSVVEEM--RTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTY 507

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAF-PDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +  L +  K       + L+ +  +F     PD  TY ++   L +N +V +   F  EM
Sbjct: 508 TPLLKLCCKRQ--WVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEM 565

Query: 352 IKNEWQP 358
           +   + P
Sbjct: 566 VSKGFAP 572



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 9/202 (4%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKY 163
           R +R  P    + +++  LGK GR  +  +    +KEDGV    +F +      G AG+ 
Sbjct: 391 RKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRL 450

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
           ++A    + M   G+  +V   N+L+SA C   +Q   AL+ L ++ ++  +PD  ++  
Sbjct: 451 EDAYSVVEEMRTTGIAPNVTTFNTLISAAC-DHSQAENALKLLVKMEEQSCNPDIKTYTP 509

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT-LIRGKQVDEALKFLRVMK 281
           LL+   K   V+        M  R + +P+   +  T L++ L R  +V ++  FL  M 
Sbjct: 510 LLKLCCKRQWVKILLFLVCHMF-RKDISPD--FSTYTLLVSWLCRNGKVAQSCLFLEEMV 566

Query: 282 GENCFPTLKFFSNALDILVKLN 303
            +   P  + F   ++ L K N
Sbjct: 567 SKGFAPKQETFDLVMEKLEKRN 588


>gi|147862837|emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
          Length = 927

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 199/452 (44%), Gaps = 45/452 (9%)

Query: 45  DAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW 104
           D   +S   R+I E+ A     ++E+ L    +  +  LV  VL+    +   A  FF W
Sbjct: 201 DPEEVSRVCRVIDELFA--LDRNMEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCW 258

Query: 105 AGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           AG+  G   +   +N M+ VLG+  +FE M   +  M E G+L++ TF+    ++  A +
Sbjct: 259 AGQKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKE 318

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
             +AV  F++M  +  +  V  +N LL  + R +     A     +++    P+  ++ +
Sbjct: 319 RKKAVGVFELMKRYNFDAGVDTINCLLDNLGRAK-LGKEAQALFEKLEDRFTPNLRTYTV 377

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL GW +  N+ EA +T+ EM+++  + P+ ++A+ T L  L++ K+  +A+K   VMK 
Sbjct: 378 LLNGWCRIKNLVEAGRTWNEMIDK-GFKPD-IIAHHTMLEGLLKCKKKSDAIKLFEVMKA 435

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +   P ++ ++  +  L K      AV+ +D  MV  G  PD+  Y  +       K++ 
Sbjct: 436 KGPSPNVRTYTILIRDLCKQMKMKEAVEYFD-EMVDSGCQPDAAVYTCLITGFGNQKKMD 494

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +V     EM +             I ++ +   P+ A+ I+  +++NGI P   + N ++
Sbjct: 495 KVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMM 554

Query: 403 V-----------------------------------GLRNLGRLSDVRRFAEEMLNRRIL 427
                                               GL   GR  +  R+ EEM+ + + 
Sbjct: 555 KSYFYTRNYEMGCAVWKEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMK 614

Query: 428 IYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 459
             ++  +K    F    +   DI + L R+ K
Sbjct: 615 APQLDYNKFAADFSRAGKP--DILEELARKMK 644



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 92/222 (41%), Gaps = 7/222 (3%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFD 155
           AV++F      G +     +  ++   G   + ++++  ++ MKE G  +   T+ ++  
Sbjct: 461 AVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIK 520

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
                   D+AV  +  M  +G++  +   N ++ +     N       +    +K   P
Sbjct: 521 LMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTRNYEMGCAVWKEMGRKGCCP 580

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D +S+ + + G  + G  EEA +   EM+E+    P+  L Y  F     R  + D   +
Sbjct: 581 DDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQ--LDYNKFAADFSRAGKPDILEE 638

Query: 276 FLRVMKGENCFPTLKFFSNALDIL---VKLNDSTHAVQLWDI 314
             R MK E  F     F+   +++   VK  D   + + WD+
Sbjct: 639 LARKMKFEGKFEVSNVFARWAEMMKKRVKRRDPVKSDRQWDL 680


>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 196/436 (44%), Gaps = 16/436 (3%)

Query: 13  KNKIIPSSSSTTTS--PTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIES 70
           K KI+PS   T     P+ H+ H     +    L    ++  +R++ +        D+E 
Sbjct: 9   KYKILPSFFCTLVQHKPSYHHFHSFPTSQVSGTLLPDLVNEISRLLSD--HRYPHHDLEL 66

Query: 71  ALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGR 128
           +L       + +LV +VL+   +   SA  FF WA    G + S  +++++V++LG   +
Sbjct: 67  SLNPFSAQLSTNLVEQVLKRCKNLGFSAHRFFLWAKSIPGFQHSVMSFHILVEILGSCKQ 126

Query: 129 FEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           F  +W+ +  M+E     + +  F  IF +Y  A   D A+ SF+ M   GV+  +  ++
Sbjct: 127 FAILWDFLTEMRESHHYEINSEIFWLIFRAYSQANLPDGAIRSFNRMDEFGVKPTIHDLD 186

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
            LL  +C++++   +A +  ++ K        +++IL+ GW + G+ E+A   F  M+E 
Sbjct: 187 KLLFILCKRKH-VKQAQQLFHQAKNRFSLTAKTYSILISGWGEIGDSEKACDLFQAMLE- 244

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
            +  P  +LAY   L  L +G +VDEA      M  +   P    +S  +      +D  
Sbjct: 245 -QGCPVDLLAYNNLLQALCKGGRVDEAKNIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQ 303

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            A ++ D M  +    P+  TYN I + L KN+ V E  +   EMI    +P   +    
Sbjct: 304 SAFRVLDKMRRY-NLLPNVFTYNCIIKQLCKNEHVEEAYQLLDEMISRGVKPDTWSYNAI 362

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR- 425
                D  E   A+ +   + ++  LP   + N +L  L  +GR   V    E M++++ 
Sbjct: 363 QAYHCDHCEVNRALRLMFRMEKDICLPDRHTYNMVLKLLIRIGRFDKVTEVWENMVDKKF 422

Query: 426 ---ILIYEVTMHKLKK 438
              +  Y V +H   K
Sbjct: 423 YPSVSTYSVMIHGFCK 438



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 136/329 (41%), Gaps = 5/329 (1%)

Query: 95  PSSAV-DFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASI 153
           P  A+  F R    G + + +  + ++ +L K    +Q        K    L+  T++ +
Sbjct: 163 PDGAIRSFNRMDEFGVKPTIHDLDKLLFILCKRKHVKQAQQLFHQAKNRFSLTAKTYSIL 222

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
              +   G  ++A   F  M   G   D++A N+LL A+C+          F + + K V
Sbjct: 223 ISGWGEIGDSEKACDLFQAMLEQGCPVDLLAYNNLLQALCKGGRVDEAKNIFHDMLSKRV 282

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           +PD  +++I +  +    +V+ A +   +M  R+   P +V  Y   +  L + + V+EA
Sbjct: 283 EPDAFTYSIFIHSYCDADDVQSAFRVLDKM-RRYNLLP-NVFTYNCIIKQLCKNEHVEEA 340

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
            + L  M      P    ++          +   A++L    M      PD  TYNM+ +
Sbjct: 341 YQLLDEMISRGVKPDTWSYNAIQAYHCDHCEVNRALRLM-FRMEKDICLPDRHTYNMVLK 399

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD-EPEIAIEIWNYILENGIL 392
            LI+  R  +V + +  M+  ++ P+    +  I        + E A + +  +++ GI 
Sbjct: 400 LLIRIGRFDKVTEVWENMVDKKFYPSVSTYSVMIHGFCKKKGKLEEACKYFEMMIDEGIP 459

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEM 421
           P   +   L   L  LG +  +   A +M
Sbjct: 460 PYVTTVEMLRNRLLGLGFIDHIEILAAKM 488


>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 159/355 (44%), Gaps = 12/355 (3%)

Query: 34   RPTRPRFPTHLDAPY---ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQL 90
            RP  P   +H DA +   I   +RI+    A  S + I  A+ C  +  T  LV ++L  
Sbjct: 1363 RPGFPATASHEDAEFEADIDEVSRILSARFA--SPEAIMIAMDCCSVRVTGCLVDKILTR 1420

Query: 91   SYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSL 147
              +   +A  FF W G   G      +++LMVD+LGK  +F+ MW  +  M E  G++SL
Sbjct: 1421 FSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSL 1480

Query: 148  PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
             T   +     GA ++ EA+ +F  M   GV +D  A+N LL  +C+ E    RA     
Sbjct: 1481 MTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCK-ERSVKRARGVFQ 1539

Query: 208  RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
             ++  + PD +SF  L+ GW K   ++EA  T  EM ++  ++P  V+ Y + +      
Sbjct: 1540 ELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEM-KQHGFSPS-VVTYTSLVEAYCME 1597

Query: 268  KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            K        L  M+   C P +  ++  +  L K   +  A+  +D +    G  PD+  
Sbjct: 1598 KDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKE-DGVAPDASF 1656

Query: 328  YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
            YN +   L +  R+ +      EM      P      T I+   D  + E A+++
Sbjct: 1657 YNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKL 1711



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 108/247 (43%), Gaps = 8/247 (3%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++N +V    K    ++  + +  MK+ G   S+ T+ S+ ++YC    +       D M
Sbjct: 1551 SFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEM 1610

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGN 232
                   +VV    L+ A+ +   +T  AL+  +++K+  V PD   +  L+    + G 
Sbjct: 1611 RKRRCPPNVVTYTILMHALGKA-GRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGR 1669

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +E+A     EM  R      +V  + T +       Q + ALK L  M+ ++C P +K +
Sbjct: 1670 LEDAYSVVEEM--RTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTY 1727

Query: 293  SNALDILVKLNDSTHAVQLWDIMMVFHGAF-PDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
            +  L +  K       + L+ +  +F     PD  TY ++   L +N +V +   F  EM
Sbjct: 1728 TPLLKLCCK--RQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEM 1785

Query: 352  IKNEWQP 358
            +   + P
Sbjct: 1786 VSKGFAP 1792



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 7/201 (3%)

Query: 107  RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKY 163
            R +R  P    + +++  LGK GR  +  +    +KEDGV    +F +      G AG+ 
Sbjct: 1611 RKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRL 1670

Query: 164  DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
            ++A    + M   G+  +V   N+L+SA C   +Q   AL+ L ++ ++  +PD  ++  
Sbjct: 1671 EDAYSVVEEMRTTGIAPNVTTFNTLISAAC-DHSQAENALKLLVKMEEQSCNPDIKTYTP 1729

Query: 223  LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
            LL+   K   V+        M  R + +P+    Y   +  L R  +V ++  FL  M  
Sbjct: 1730 LLKLCCKRQWVKILLFLVCHMF-RKDISPDFS-TYTLLVSWLCRNGKVAQSCLFLEEMVS 1787

Query: 283  ENCFPTLKFFSNALDILVKLN 303
            +   P  + F   ++ L K N
Sbjct: 1788 KGFAPKQETFDLVMEKLEKRN 1808


>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 159/355 (44%), Gaps = 12/355 (3%)

Query: 34   RPTRPRFPTHLDAPY---ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQL 90
            RP  P   +H DA +   I   +RI+    A  S + I  A+ C  +  T  LV ++L  
Sbjct: 1404 RPGFPATASHEDAEFEADIDEVSRILSARFA--SPEAIMIAMDCCSVRVTGCLVDKILTR 1461

Query: 91   SYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSL 147
              +   +A  FF W G   G      +++LMVD+LGK  +F+ MW  +  M E  G++SL
Sbjct: 1462 FSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSL 1521

Query: 148  PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
             T   +     GA ++ EA+ +F  M   GV +D  A+N LL  +C+ E    RA     
Sbjct: 1522 MTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCK-ERSVKRARGVFQ 1580

Query: 208  RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
             ++  + PD +SF  L+ GW K   ++EA  T  EM ++  ++P  V+ Y + +      
Sbjct: 1581 ELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEM-KQHGFSPS-VVTYTSLVEAYCME 1638

Query: 268  KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            K        L  M+   C P +  ++  +  L K   +  A+  +D +    G  PD+  
Sbjct: 1639 KDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKE-DGVAPDASF 1697

Query: 328  YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
            YN +   L +  R+ +      EM      P      T I+   D  + E A+++
Sbjct: 1698 YNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKL 1752



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 108/247 (43%), Gaps = 8/247 (3%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++N +V    K    ++  + +  MK+ G   S+ T+ S+ ++YC    +       D M
Sbjct: 1592 SFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEM 1651

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGN 232
                   +VV    L+ A+ +   +T  AL+  +++K+  V PD   +  L+    + G 
Sbjct: 1652 RKRRCPPNVVTYTILMHALGKA-GRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGR 1710

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +E+A     EM  R      +V  + T +       Q + ALK L  M+ ++C P +K +
Sbjct: 1711 LEDAYSVVEEM--RTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQSCNPDIKTY 1768

Query: 293  SNALDILVKLNDSTHAVQLWDIMMVFHGAF-PDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
            +  L +  K       + L+ +  +F     PD  TY ++   L +N +V +   F  EM
Sbjct: 1769 TPLLKLCCK--RQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSCLFLEEM 1826

Query: 352  IKNEWQP 358
            +   + P
Sbjct: 1827 VSKGFAP 1833



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 7/201 (3%)

Query: 107  RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKY 163
            R +R  P    + +++  LGK GR  +  +    +KEDGV    +F +      G AG+ 
Sbjct: 1652 RKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRL 1711

Query: 164  DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
            ++A    + M   G+  +V   N+L+SA C   +Q   AL+ L ++ ++  +PD  ++  
Sbjct: 1712 EDAYSVVEEMRTTGIAPNVTTFNTLISAAC-DHSQAENALKLLVKMEEQSCNPDIKTYTP 1770

Query: 223  LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
            LL+   K   V+        M  R + +P+    Y   +  L R  +V ++  FL  M  
Sbjct: 1771 LLKLCCKRQWVKILLFLVCHMF-RKDISPDFS-TYTLLVSWLCRNGKVAQSCLFLEEMVS 1828

Query: 283  ENCFPTLKFFSNALDILVKLN 303
            +   P  + F   ++ L K N
Sbjct: 1829 KGFAPKQETFDLVMEKLEKRN 1849


>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Brachypodium distachyon]
          Length = 649

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 166/366 (45%), Gaps = 10/366 (2%)

Query: 48  YISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR 107
           ++      I +++A  +  ++E+ L+      +  LV  VL     +   +  FF+WA  
Sbjct: 171 HVGRVCAAIADVMAAGADANLEATLSALSPPLSEALVLAVLDRFKHAHRPSRRFFQWAAA 230

Query: 108 GQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
                 +P  +  M+ +LGK  +FE M   V+ M + G L +  F     S+  AG+   
Sbjct: 231 SDEFEHTPVTYCKMLHILGKARQFETMVALVQEMGKAGALCMDAFKIAIKSFAAAGEIKN 290

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           AV  F++M +HG +  V + N LL A+  QE     A    +R++    PD  S+  L+ 
Sbjct: 291 AVGVFEMMRVHGFDDGVESFNCLLVALA-QEGLGKEAARVFDRMRDQYTPDLRSYTALML 349

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            W    N+ EA + + +M+E+    P+ V+ + T +  L+RG++  EA+K   +MK +  
Sbjct: 350 AWCNARNLVEAGRVWNDMLEK-GMKPD-VVVHNTMIDGLLRGQRRPEAVKMFELMKAKGP 407

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P +  ++  +    K      A++ ++ M V  G  P+  TY  +       KR+  V 
Sbjct: 408 PPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQV-AGCQPEVATYTCLLVGYGNAKRMDRVT 466

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL--- 402
               EM +    P        I +L + + P+ A+ I+  ++  G+ P   + N ++   
Sbjct: 467 AMLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMKSY 526

Query: 403 -VGLRN 407
            +G RN
Sbjct: 527 FLGGRN 532


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 179/428 (41%), Gaps = 70/428 (16%)

Query: 63  ASSDDIESALA------CTGI---IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL-- 111
           +S+D + SA+       C G+   IP P                 + FF WA   +    
Sbjct: 100 SSADSVSSAIVRRVIEKCGGVRHGIPFPQ---------------TLAFFNWATNLEEFGH 144

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
           SP  +  M+D+ GK  +F+  W  + +MK   V + + TF  +   Y  AG   EAV +F
Sbjct: 145 SPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAF 204

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           + M  +G + D +A + ++S++ ++  +   A  F + +K   +PD   +  L+ GW + 
Sbjct: 205 NRMEDYGCKPDKIAFSVVISSLSKKR-RAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRA 263

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN+ EA + FGEM  +      +V  Y   +  L R  Q+  A      M    C P   
Sbjct: 264 GNISEAERVFGEM--KMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAI 321

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM-------------------- 330
            F+N + + VK   +   +Q+++ M    G  PD++TYN                     
Sbjct: 322 TFNNLMRVHVKAGRTEKVLQVYNQMKRL-GCPPDAITYNFLIESHCRDDNLEEAVKILNS 380

Query: 331 --------------IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
                         IF C+ K   V+   + F +M   + +P  +     + M  D    
Sbjct: 381 VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKST 440

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL-----IYEV 431
           ++ +++   + EN I P   +   L+     +G  ++   F +EM+  + L     +YE+
Sbjct: 441 DMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEM 500

Query: 432 TMHKLKKA 439
            + +L+KA
Sbjct: 501 VLQQLRKA 508



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 138/326 (42%), Gaps = 7/326 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           F R    G +    A+++++  L K  R  +  +    +K+     +  + S+   +C A
Sbjct: 204 FNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRA 263

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
           G   EA   F  M M G++ +V   + ++ A+CR   Q +RA +  + +  +  DP+  +
Sbjct: 264 GNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRS-GQITRAHDVFSEMIDVGCDPNAIT 322

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  L+    K G  E+  + + +M +R    P+  + Y   + +  R   ++EA+K L  
Sbjct: 323 FNNLMRVHVKAGRTEKVLQVYNQM-KRLGCPPD-AITYNFLIESHCRDDNLEEAVKILNS 380

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           +K + C      F+     + KL D   A +++  M       P+++TYN++       K
Sbjct: 381 VK-KGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLK-CRPNTVTYNILMRMFADKK 438

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
               V K   EM +NE +P        I+          A   +  ++E   L       
Sbjct: 439 STDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVY 498

Query: 400 EL-LVGLRNLGRLSDVRRFAEEMLNR 424
           E+ L  LR  G+L       E+M+NR
Sbjct: 499 EMVLQQLRKAGQLKKHEELVEKMVNR 524


>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22670, mitochondrial; Flags: Precursor
 gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 562

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 158/358 (44%), Gaps = 47/358 (13%)

Query: 56  ICEIL--AHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRL 111
           +C+ L     S +D+   L+   ++ T  LV +VL+   +  + A  FF WA    G   
Sbjct: 105 VCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVH 164

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVM---KEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           S + +N MVDVLGK   F+ MW  V  M   +E  +++L T + +      +GKY++AV 
Sbjct: 165 SGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVD 224

Query: 169 SF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG- 226
           +F ++   +GV+ D +A+NSL+ A+ + EN    A E   ++   + PD  +F IL+ G 
Sbjct: 225 AFLEMEKSYGVKTDTIAMNSLMDALVK-ENSIEHAHEVFLKLFDTIKPDARTFNILIHGF 283

Query: 227 ----------------------------------WEKEGNVEEANKTFGEMVERFEWNPE 252
                                             + KEG+    N+   EM E    NP 
Sbjct: 284 CKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMREN-GCNP- 341

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +V+ Y   + +L + KQV EAL     MK + C P  KF+S+ + IL K      A +++
Sbjct: 342 NVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIF 401

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           +  M   G   D L YN +    + + R     +    M   E +    N  T   +L
Sbjct: 402 ED-MTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLL 458


>gi|356560497|ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Glycine max]
          Length = 490

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 180/370 (48%), Gaps = 11/370 (2%)

Query: 73  ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFE 130
           AC  I  + DLVH +L    D   SA+  FRWA      R S  ++++MVD+LG+    E
Sbjct: 67  ACDFIPLSRDLVHRLLWRYKDDWKSALGVFRWASSRPSFRHSSESYDMMVDILGRMKVME 126

Query: 131 QMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
           ++ + +  M+E G++++ T A     + GAG++ +AV  FD +   G+E++  ++N LL 
Sbjct: 127 KLRDLLEEMREGGLVNMNTVAKAMRRFVGAGQWVDAVRIFDDLQALGLEKNTESMNLLLD 186

Query: 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
            +C+ E    +A E    +K+ + P+  +F I + GW K   V+EA+ T  EM + + ++
Sbjct: 187 TLCK-EKFVQQAREIFLELKQHIAPNAHTFNIFIHGWCKICRVDEAHWTIQEM-KGYGFH 244

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P  V++Y T +    +        + L  M+ + C   +  +++ +  L K      A++
Sbjct: 245 P-CVISYSTLIQCYCQEGNFSRVYELLDEMQAQGCSANVITYTSIMCALGKAKKFEEALK 303

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH-EMIKNEWQPTPLNCATAITM 369
           + + M    G  PD+L +N +   L +  R+ +    F  EM K    P      + I+M
Sbjct: 304 VPERMRS-SGCRPDTLFFNSLIHTLGRAGRLDDAADVFKVEMPKAGVSPNTSTYNSMISM 362

Query: 370 LLDADEPEIAIEIWNYILEN--GILPLEASANELLVGLRNLGRLSDV-RRFAEEMLNRRI 426
                + + A+EI    +EN  G  P   + + L+      G++  V      +M+N++ 
Sbjct: 363 FCYHAQEKRALEILKE-MENSGGCKPDAQTYHPLIKSCFRSGKIDGVLSEILNDMINKQH 421

Query: 427 LIYEVTMHKL 436
           L  +++ + L
Sbjct: 422 LSLDLSTYTL 431



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 52/262 (19%), Positives = 106/262 (40%), Gaps = 10/262 (3%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           Q ++P A  +N+ +    K  R ++    ++ MK  G    + +++++   YC  G +  
Sbjct: 206 QHIAPNAHTFNIFIHGWCKICRVDEAHWTIQEMKGYGFHPCVISYSTLIQCYCQEGNFSR 265

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
                D M   G   +V+   S++ A+ + + +   AL+   R++     PD   F  L+
Sbjct: 266 VYELLDEMQAQGCSANVITYTSIMCALGKAK-KFEEALKVPERMRSSGCRPDTLFFNSLI 324

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
               + G +++A   F   + +   +P +   Y + +       Q   AL+ L+ M+   
Sbjct: 325 HTLGRAGRLDDAADVFKVEMPKAGVSP-NTSTYNSMISMFCYHAQEKRALEILKEMENSG 383

Query: 285 -CFPTLKFFSNALDILVKLN--DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            C P  + +   +    +    D   +  L D++   H +  D  TY ++   L +  R 
Sbjct: 384 GCKPDAQTYHPLIKSCFRSGKIDGVLSEILNDMINKQHLSL-DLSTYTLLIHGLCREDRC 442

Query: 342 HEVEKFFHEMIKNEWQPTPLNC 363
           +     F EMI  +  P    C
Sbjct: 443 NWAFSLFEEMIDQDIIPRYRTC 464


>gi|225447826|ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Vitis vinifera]
          Length = 679

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 107/453 (23%), Positives = 202/453 (44%), Gaps = 47/453 (10%)

Query: 45  DAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW 104
           D   +S   R+I E+ A     ++E+ L    +  +  LV  VL+    +   A  FF W
Sbjct: 201 DPEEVSRVCRVIDELFA--LDRNMEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCW 258

Query: 105 AGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           AG+  G   +   +N M+ VLG+  +FE M   +  M E G+L++ TF+    ++  A +
Sbjct: 259 AGQKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKE 318

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE-NQTSRALEFLNRVKKIVDPDGDSFA 221
             +AV  F++M  +  +  V  +N LL  + R +  + ++AL    +++    P+  ++ 
Sbjct: 319 RKKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQAL--FEKLEDRFTPNLRTYT 376

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +LL GW +  N+ EA +T+ EM+++  + P+ ++A+ T L  L++ K+  +A+K   VMK
Sbjct: 377 VLLNGWCRIKNLVEAGRTWNEMIDK-GFKPD-IIAHHTMLEGLLKCKKKSDAIKLFEVMK 434

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            +   P ++ ++  +  L K      AV+ +D  MV  G  PD+  Y  +       K++
Sbjct: 435 AKGPSPNVRTYTILIRDLCKQMKMQEAVEYFD-EMVDSGCQPDAAVYTCLITGFGNQKKM 493

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI---------- 391
            +V     EM +             I ++ +   P+ A+ I+  +++NGI          
Sbjct: 494 DKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMM 553

Query: 392 -------------------------LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
                                     P + S    + GL   GR  +  R+ EEM+ + +
Sbjct: 554 MKSYFYTRNYEMGCAVWEEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGM 613

Query: 427 LIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 459
              ++  +K    F    +   DI + L R+ K
Sbjct: 614 KAPQLDYNKFAADFSRAGKP--DILEELARKMK 644



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 90/220 (40%), Gaps = 7/220 (3%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFD 155
           AV++F      G +     +  ++   G   + ++++  ++ MKE G  +   T+ ++  
Sbjct: 461 AVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIK 520

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
                   D+AV  +  M  +G++  +   N ++ +     N       +    +K   P
Sbjct: 521 LMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTRNYEMGCAVWEEMGRKGCCP 580

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D +S+ + + G  + G  EEA +   EM+E+    P+  L Y  F     R  + D   +
Sbjct: 581 DDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQ--LDYNKFAADFSRAGKPDILEE 638

Query: 276 FLRVMKGENCFPTLKFFSNALDIL---VKLNDSTHAVQLW 312
             R MK E  F     F+   +++   VK  D   + + W
Sbjct: 639 LARKMKFEGKFEVSNVFARWAEMMKKRVKRRDPVKSDRQW 678


>gi|296081511|emb|CBI20034.3| unnamed protein product [Vitis vinifera]
          Length = 596

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 172/350 (49%), Gaps = 10/350 (2%)

Query: 45  DAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW 104
           D   +S   R+I E+ A     ++E+ L    +  +  LV  VL+    +   A  FF W
Sbjct: 156 DPEEVSRVCRVIDELFA--LDRNMEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCW 213

Query: 105 AGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           AG+  G   +   +N M+ VLG+  +FE M   +  M E G+L++ TF+    ++  A +
Sbjct: 214 AGQKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKE 273

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE-NQTSRALEFLNRVKKIVDPDGDSFA 221
             +AV  F++M  +  +  V  +N LL  + R +  + ++AL    +++    P+  ++ 
Sbjct: 274 RKKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQAL--FEKLEDRFTPNLRTYT 331

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +LL GW +  N+ EA +T+ EM+++  + P+ ++A+ T L  L++ K+  +A+K   VMK
Sbjct: 332 VLLNGWCRIKNLVEAGRTWNEMIDK-GFKPD-IIAHHTMLEGLLKCKKKSDAIKLFEVMK 389

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            +   P ++ ++  +  L K      AV+ +D  MV  G  PD+  Y  +       K++
Sbjct: 390 AKGPSPNVRTYTILIRDLCKQMKMQEAVEYFD-EMVDSGCQPDAAVYTCLITGFGNQKKM 448

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
            +V     EM +             I ++ +   P+ A+ I+  +++NGI
Sbjct: 449 DKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGI 498


>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
 gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 170/352 (48%), Gaps = 10/352 (2%)

Query: 56  ICEILAH--ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRL 111
           +C+++    A   ++E+ L   GI  + DLV EVL+    +   A  FF WA    G   
Sbjct: 79  VCKVIDELFALDHNMEAVLDECGINLSHDLVIEVLERFRHARKPAFRFFCWAAEKPGFVH 138

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
               ++ M+ +L K  +FE M + +  M E  +L+L TF+    ++  A +  +AV  F+
Sbjct: 139 DSRTYHSMMIILAKARQFETMMSMLEEMGEKRLLTLDTFSIAMRAFAAAKERKKAVGIFE 198

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQE-NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           +M  H     V  +N+LL ++ R +  + ++AL    +++    P+  ++ +LL GW + 
Sbjct: 199 LMKNHKYRVGVETINALLDSLGRAKLGKEAQAL--FGKLEGRFTPNLRTYTVLLNGWCRV 256

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            N+ EA + + EM++   + P+ ++ +   L  L+R K+  +A+KF  VMK +   P ++
Sbjct: 257 KNLMEAGRIWNEMLDE-GFKPD-IVTHNIMLEGLLRSKKRSDAIKFFEVMKAKGPSPDVR 314

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            ++  +  L K      AV  +   MV  G  PD+  Y  +      +KR+  V +   E
Sbjct: 315 SYTILIRDLCKQTKMKEAVGYF-YEMVDSGCHPDAAVYTCLMTGYGNHKRMDMVYELLKE 373

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           M +    P        I ++     P+ A+ I+  +++NGI P   S N ++
Sbjct: 374 MKEKGCPPDGKTYNALIKLMTSQRMPDDAVRIYKKMIQNGIEPSIHSYNMIM 425



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 3/202 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F+     G       +  ++   G + R + ++  ++ MKE G      T+ ++      
Sbjct: 336 FYEMVDSGCHPDAAVYTCLMTGYGNHKRMDMVYELLKEMKEKGCPPDGKTYNALIKLMTS 395

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
               D+AV  +  M  +G+E  + + N ++ +  R  N       +    KK   PD +S
Sbjct: 396 QRMPDDAVRIYKKMIQNGIEPSIHSYNMIMKSYFRIRNYEMGHAVWDEMSKKGFCPDDNS 455

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + + + G   +G  EEA K   EM+E+    P+  L Y  F     R  + D   +  + 
Sbjct: 456 YTVFIGGLISQGRSEEACKYLEEMIEKGMKAPQ--LDYNKFAADFSRAGKPDILEELAQK 513

Query: 280 MKGENCFPTLKFFSNALDILVK 301
           MK    F     F+   +++ K
Sbjct: 514 MKFSGKFEVSNVFARWAEMMKK 535



 Score = 45.4 bits (106), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 92/207 (44%), Gaps = 10/207 (4%)

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET---FLITLIRGKQVDEAL 274
           D+F+I +  +      ++A   F  M      N ++ +  ET    L +L R K   EA 
Sbjct: 175 DTFSIAMRAFAAAKERKKAVGIFELMK-----NHKYRVGVETINALLDSLGRAKLGKEAQ 229

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
                ++G    P L+ ++  L+   ++ +   A ++W+ M+   G  PD +T+N++ E 
Sbjct: 230 ALFGKLEGRFT-PNLRTYTVLLNGWCRVKNLMEAGRIWNEMLD-EGFKPDIVTHNIMLEG 287

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L+++K+  +  KFF  M      P   +    I  L    + + A+  +  ++++G  P 
Sbjct: 288 LLRSKKRSDAIKFFEVMKAKGPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPD 347

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEM 421
            A    L+ G  N  R+  V    +EM
Sbjct: 348 AAVYTCLMTGYGNHKRMDMVYELLKEM 374


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 151/329 (45%), Gaps = 6/329 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCG 159
           F +   RG   +  A+N +++ L K+   E+ +  +  M   G V    T+ +I    C 
Sbjct: 137 FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCR 196

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGD 218
            GK  EA   FD M   G   DVVA N LL A+  +E +T  A++ F + + K   PD  
Sbjct: 197 MGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDAL-YKEGKTDEAMKLFKDVIAKGYMPDTV 255

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  +L G  ++ N++EA + F +MV        +   Y   L    R K+VD+A K L 
Sbjct: 256 TYNSILLGLARKSNMDEAEEMFKKMVA--SGCAPNGATYSIVLSGHCRAKKVDDAHKVLE 313

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M      P +  ++  LD L K N    A +L+   MV +G  PD ++Y+++   L K 
Sbjct: 314 EMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFST-MVDNGCAPDIVSYSVVLNGLCKT 372

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
            +VH+    F  MI+ +  P  +     +  L  A + + A ++ + +  +G  P   + 
Sbjct: 373 NKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAY 432

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           N L+ GLR  GR     R  + M  +  L
Sbjct: 433 NTLMNGLRKQGRHIQADRLTQAMKEKGFL 461



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 165/354 (46%), Gaps = 13/354 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G   S Y +N +++   K  + ++     + M E G    + T+++I    C  GK  EA
Sbjct: 73  GLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEA 132

Query: 167 V-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           + M F  M   G   + VA N+L++ +C+ EN   RA + L  +  K   PD  ++  +L
Sbjct: 133 LEMLFHKMIERGCSANTVAYNALINGLCKDEN-IERAYKLLEEMASKGYVPDNITYNTIL 191

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  + G V EA + F  M  R  ++P+ V+AY   L  L +  + DEA+K  + +  + 
Sbjct: 192 SGLCRMGKVSEAKQFFDSMPSR-GYSPD-VVAYNGLLDALYKEGKTDEAMKLFKDVIAKG 249

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P    +++ L  L + ++   A +++   MV  G  P+  TY+++     + K+V + 
Sbjct: 250 YMPDTVTYNSILLGLARKSNMDEAEEMFK-KMVASGCAPNGATYSIVLSGHCRAKKVDDA 308

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            K   EM K    P  +     +  L   +  + A E+++ +++NG  P   S + +L G
Sbjct: 309 HKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNG 368

Query: 405 LRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
           L    ++ D R   + M+ R+    ++ + + M  L KA   +    +D+ D +
Sbjct: 369 LCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKA--GKLDEAKDLLDQM 420



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 140/311 (45%), Gaps = 7/311 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMSFDV 172
           Y + +++    K G+    +     M ++G+      +  + D Y   G+ DEA   ++ 
Sbjct: 9   YTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEE 68

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEG 231
           M   G+E  +   NSLL+A C+ E +   A+E F    +K  +PD  +++ ++ G  K G
Sbjct: 69  MVSVGLEPSIYTYNSLLNAFCK-ETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTG 127

Query: 232 NVEEA-NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            V EA    F +M+ER      + +AY   +  L + + ++ A K L  M  +   P   
Sbjct: 128 KVTEALEMLFHKMIER--GCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNI 185

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            ++  L  L ++   + A Q +D  M   G  PD + YN + + L K  +  E  K F +
Sbjct: 186 TYNTILSGLCRMGKVSEAKQFFD-SMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKD 244

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           +I   + P  +   + +  L      + A E++  ++ +G  P  A+ + +L G     +
Sbjct: 245 VIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKK 304

Query: 411 LSDVRRFAEEM 421
           + D  +  EEM
Sbjct: 305 VDDAHKVLEEM 315


>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
 gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
          Length = 534

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 127/265 (47%), Gaps = 7/265 (2%)

Query: 98  AVDFFRWA--GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIF 154
           A+ FF WA  G G   SP  +N M+D+ GK  +F   W  + +MK   V +++ TF+ + 
Sbjct: 131 ALAFFNWATAGEGFEHSPQPYNEMIDLAGKVKQFGLAWYLIDLMKARNVEITVVTFSMLV 190

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
             Y  AG   EAV +F+ M  +G   D++A ++++S +C++  +   A  F + +K   +
Sbjct: 191 RRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSNVISILCKKR-RAVEAQSFFDNLKHKFE 249

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD   +  L+ GW + G++ EA   F EM  +      +V  Y   +  L R  Q+  A 
Sbjct: 250 PDVIVYTSLVHGWCRAGDISEAESVFREM--KMAGISPNVYTYSIVIDALCRSGQITRAH 307

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
                M    C P    F+N + + ++   +   +Q+++ M     A  D +TYN + E 
Sbjct: 308 DVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCA-ADLITYNFLIET 366

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPT 359
             K+  + E  K  + M KN+  P 
Sbjct: 367 HCKDDNLGEAIKVLNSMAKNDCTPN 391



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 133/333 (39%), Gaps = 20/333 (6%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           F R    G      A++ ++ +L K  R  +  +    +K      +  + S+   +C A
Sbjct: 206 FNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLKHKFEPDVIVYTSLVHGWCRA 265

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDS 219
           G   EA   F  M M G+  +V   + ++ A+CR   Q +RA + F   +    +P+  +
Sbjct: 266 GDISEAESVFREMKMAGISPNVYTYSIVIDALCRS-GQITRAHDVFAEMLDAGCNPNSVT 324

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  L+    + G  E+  + + +M +R     + ++ Y   + T  +   + EA+K L  
Sbjct: 325 FNNLIRVHLRAGRTEKVLQVYNQM-KRLRCAAD-LITYNFLIETHCKDDNLGEAIKVLNS 382

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M   +C P    F+     + K  D   A +++  M    G  P+++TYN++       K
Sbjct: 383 MAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEV-GCKPNTVTYNILMRMFAVPK 441

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY--------ILENGI 391
               + K   EM + E +P   N    +  L         +  WN+        I E  I
Sbjct: 442 SADMIFKLKKEMDEEEVEPN-FNTYRELIALY------CGMGHWNHAYMFFREMIDEKCI 494

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            P       +L  LR  G+L       ++M+ R
Sbjct: 495 KPSMPLYKMVLEELRKAGQLKKHEELVDKMVER 527


>gi|357142780|ref|XP_003572691.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130,
           mitochondrial-like [Brachypodium distachyon]
          Length = 501

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 166/375 (44%), Gaps = 13/375 (3%)

Query: 71  ALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYAWNLMVDVLGKNGR 128
            + C GI PT ++V  +L    D   SA+  F+WA      + + YA + M+D+LGK  +
Sbjct: 73  GIGCPGIQPTSNIVDGLLSKFGDDWKSALGLFQWAQSSGNYKHTAYACSRMIDLLGKMRQ 132

Query: 129 FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
            +QMW+ +  M   G++++   A+      GA ++ +AV+ FD +   G+E++   +N L
Sbjct: 133 IDQMWDLLSDMHCRGLVTVEAAATSIRRLAGARRWKDAVLLFDKLGDMGLERNTETMNVL 192

Query: 189 LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
           L A+C+ E +   A +    +   + PD  +F I + GW     ++EA  T  EM  + +
Sbjct: 193 LDALCK-EKKVEVARKVFLVLSPHIQPDAYTFNIFVHGWCSARRIDEAMWTIEEM--KAQ 249

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             P  V+ Y T L    +        + L  M  E C P +  ++  +  L K +    A
Sbjct: 250 GFPPSVITYTTVLEAYCKQHNFRMVYEILDSMSSEGCHPNVITYTMIMTSLAKCHMFEEA 309

Query: 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH-EMIKNEWQPTPLNCATAI 367
           + +    M   G  PD+L YN +   L K   + E  + F  EM  N    +     T I
Sbjct: 310 LSV-SHRMKSSGCKPDTLFYNSLINLLGKAGHLSEASQVFQVEMPMNGVPRSLATYNTMI 368

Query: 368 TMLLDADEPEIAIEIWNYILENGILP-LEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           ++    D  E A+ +   +      P L+     L + L   G+   VR    E++N+  
Sbjct: 369 SVFCYKDLDEDALSVLKEMETQSCKPDLQTYRPLLRLFLSRRGQDDTVRNLLNELMNKHS 428

Query: 427 L-----IYEVTMHKL 436
           L      Y + +H L
Sbjct: 429 LGLDLDTYTLLIHGL 443



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 118/278 (42%), Gaps = 9/278 (3%)

Query: 114 YAWNLMVDVLGKNGRF-EQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFD 171
           Y +N+ V       R  E MW  +  MK  G   S+ T+ ++ ++YC    +       D
Sbjct: 221 YTFNIFVHGWCSARRIDEAMWT-IEEMKAQGFPPSVITYTTVLEAYCKQHNFRMVYEILD 279

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKE 230
            MS  G   +V+    +++++ +  +    AL   +R+K     PD   +  L+    K 
Sbjct: 280 SMSSEGCHPNVITYTMIMTSLAKC-HMFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKA 338

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE-ALKFLRVMKGENCFPTL 289
           G++ EA++ F ++       P  +  Y T +I++   K +DE AL  L+ M+ ++C P L
Sbjct: 339 GHLSEASQVF-QVEMPMNGVPRSLATYNT-MISVFCYKDLDEDALSVLKEMETQSCKPDL 396

Query: 290 KFFSNALDILVKLNDSTHAVQ-LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           + +   L + +        V+ L + +M  H    D  TY ++   L +        + F
Sbjct: 397 QTYRPLLRLFLSRRGQDDTVRNLLNELMNKHSLGLDLDTYTLLIHGLCRVGETDWAYRLF 456

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
            EM+ +E  P    C   ++        E    I NY+
Sbjct: 457 DEMVGSEIVPRYRTCELLLSEAQRKKMEEWVERIQNYM 494


>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
 gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
          Length = 370

 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 7/242 (2%)

Query: 101 FFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSY 157
           FF WA    G   SP A+N MVD  GK   F+  W+ + +MK   V +++ TF+ +   Y
Sbjct: 133 FFNWASYQDGFDKSPEAFNEMVDFAGKVRMFDLAWHVIDLMKARDVEITVETFSILMRRY 192

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
             AG   EA+ +F+ M  +  + D +A + L+S +CR+  + S A EF + +K   +PD 
Sbjct: 193 VRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRKR-RASEAQEFFDSLKDKFEPDV 251

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
             +  L+ GW + GN+ EA + FGEM  +      +V  Y   + +L R  Q+  A    
Sbjct: 252 IVYTNLVRGWCRAGNISEAERVFGEM--KVAGIKPNVYTYSIVIDSLCRCGQITRAHDVF 309

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M    C P    +++ + I VK   +   +Q+++ M    G  PD++TYN + E   K
Sbjct: 310 AEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRL-GCEPDTVTYNFLIETHCK 368

Query: 338 NK 339
           ++
Sbjct: 369 DE 370



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 86/185 (46%), Gaps = 4/185 (2%)

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
           ++F+IL+  + + G   EA   F  M E +   P+ + A+   +  L R ++  EA +F 
Sbjct: 183 ETFSILMRRYVRAGLAAEAIHAFNRM-EDYNCKPDKI-AFSILISILCRKRRASEAQEFF 240

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             +K +   P +  ++N +    +  + + A +++  M V  G  P+  TY+++ + L +
Sbjct: 241 DSLK-DKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKV-AGIKPNVYTYSIVIDSLCR 298

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             ++      F EM+    QP  +   + + + + A   E  ++++N +   G  P   +
Sbjct: 299 CGQITRAHDVFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVT 358

Query: 398 ANELL 402
            N L+
Sbjct: 359 YNFLI 363


>gi|356540361|ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 194/436 (44%), Gaps = 16/436 (3%)

Query: 13  KNKIIPSSSSTTTS--PTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIES 70
           K KI+PS   T     P+ H+ H    P+    L    ++  +R++ +        D+E 
Sbjct: 9   KYKILPSFFCTLVQHKPSYHHFHSFPTPQVSGPLLPDLVNEISRLLSD--HRYPHHDLEL 66

Query: 71  ALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGR 128
           +L       + +LV +VL+   +   SA  FF WA    G + S  +++++V++LG   +
Sbjct: 67  SLNPFSAQISTNLVDQVLKRCNNLGFSAHRFFLWAKSIPGFQHSVMSFHILVEILGSCKQ 126

Query: 129 FEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           F  +W+ +  M+      + +  F  IF +Y  A   D A+ SF+ M   G++  +   +
Sbjct: 127 FAILWDFLIEMRGSCHYEINSEIFWLIFRAYSQANLPDGAIRSFNRMDEFGIKPTINDFD 186

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
            LL  +C+ ++   +A +F ++ K        +++IL+ GW   G+ E+A++ F  M+E 
Sbjct: 187 KLLFILCKTKH-VKQAQQFFDQAKNRFLLTAKTYSILISGWGDIGDSEKAHELFQAMLE- 244

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
            +  P  +LAY   L  L +G  VDEA      M  +   P    +S  +      +D  
Sbjct: 245 -QGCPVDLLAYNNLLQALCKGGCVDEAKTIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQ 303

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            A+++ D M  +    P+  TYN I + L KN+ V E      EMI    +P   +    
Sbjct: 304 SALRVLDKMRRY-NILPNVFTYNCIIKRLCKNEHVEEAYLLLDEMISRGVRPDTWSYNAI 362

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR- 425
                D  E   AI +   + ++  LP   + N +L  L  +GR   V +    M +++ 
Sbjct: 363 QAYHCDHCEVNRAIRLMFRMEKDNCLPDRHTYNMVLKLLIRIGRFDKVTKVWGNMGDKKF 422

Query: 426 ---ILIYEVTMHKLKK 438
              +  Y V +H   K
Sbjct: 423 YPSVSTYSVMIHGFCK 438



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 123/301 (40%), Gaps = 4/301 (1%)

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           +L K    +Q        K   +L+  T++ +   +   G  ++A   F  M   G   D
Sbjct: 191 ILCKTKHVKQAQQFFDQAKNRFLLTAKTYSILISGWGDIGDSEKAHELFQAMLEQGCPVD 250

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           ++A N+LL A+C+          F + + K V+PD  +++I +  +    +V+ A +   
Sbjct: 251 LLAYNNLLQALCKGGCVDEAKTIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQSALRVLD 310

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           +M  R+   P +V  Y   +  L + + V+EA   L  M      P    ++        
Sbjct: 311 KM-RRYNILP-NVFTYNCIIKRLCKNEHVEEAYLLLDEMISRGVRPDTWSYNAIQAYHCD 368

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
             +   A++L    M      PD  TYNM+ + LI+  R  +V K +  M   ++ P+  
Sbjct: 369 HCEVNRAIRLM-FRMEKDNCLPDRHTYNMVLKLLIRIGRFDKVTKVWGNMGDKKFYPSVS 427

Query: 362 NCATAITMLLDAD-EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 420
             +  I        + E A + +  +++ GI P   +   L   L  LG L  +   A +
Sbjct: 428 TYSVMIHGFCKKKGKLEEACKYFEMMIDEGIPPYVTTVEMLRNQLLGLGFLDHIEILAAK 487

Query: 421 M 421
           M
Sbjct: 488 M 488


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 179/428 (41%), Gaps = 70/428 (16%)

Query: 63   ASSDDIESALA------CTGI---IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL-- 111
            +S+D + SA+       C G+   IP P                 + FF WA   +    
Sbjct: 1132 SSADSVSSAIVRRVIEKCGGVRHGIPFPQ---------------TLAFFNWATNLEEFGH 1176

Query: 112  SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
            SP  +  M+D+ GK  +F+  W  + +MK   V + + TF  +   Y  AG   EAV +F
Sbjct: 1177 SPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAF 1236

Query: 171  DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
            + M  +G + D +A + ++S++ ++  +   A  F + +K   +PD   +  L+ GW + 
Sbjct: 1237 NRMEDYGCKPDKIAFSVVISSLSKKR-RAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRA 1295

Query: 231  GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            GN+ EA + FGEM  +      +V  Y   +  L R  Q+  A      M    C P   
Sbjct: 1296 GNISEAERVFGEM--KMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAI 1353

Query: 291  FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM-------------------- 330
             F+N + + VK   +   +Q+++ M    G  PD++TYN                     
Sbjct: 1354 TFNNLMRVHVKAGRTEKVLQVYNQMKRL-GCPPDAITYNFLIESHCRDDNLEEAVKILNS 1412

Query: 331  --------------IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
                          IF C+ K   V+   + F +M   + +P  +     + M  D    
Sbjct: 1413 VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKST 1472

Query: 377  EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL-----IYEV 431
            ++ +++   + EN I P   +   L+     +G  ++   F +EM+  + L     +YE+
Sbjct: 1473 DMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEM 1532

Query: 432  TMHKLKKA 439
             + +L+KA
Sbjct: 1533 VLQQLRKA 1540



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 137/326 (42%), Gaps = 7/326 (2%)

Query: 101  FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
            F R    G +    A+++++  L K  R  +  +    +K+     +  + S+   +C A
Sbjct: 1236 FNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRA 1295

Query: 161  GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
            G   EA   F  M M G+  +V   + ++ A+CR   Q +RA +  + +  +  DP+  +
Sbjct: 1296 GNISEAERVFGEMKMAGIXPNVYTYSIVIDALCR-SGQITRAHDVFSEMIDVGCDPNAIT 1354

Query: 220  FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
            F  L+    K G  E+  + + +M +R    P+  + Y   + +  R   ++EA+K L  
Sbjct: 1355 FNNLMRVHVKAGRTEKVLQVYNQM-KRLGCPPD-AITYNFLIESHCRDDNLEEAVKILNS 1412

Query: 280  MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
            +K + C      F+     + KL D   A +++  M       P+++TYN++       K
Sbjct: 1413 VK-KGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLK-CRPNTVTYNILMRMFADKK 1470

Query: 340  RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
                V K   EM +NE +P        I+          A   +  ++E   L       
Sbjct: 1471 STDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVY 1530

Query: 400  EL-LVGLRNLGRLSDVRRFAEEMLNR 424
            E+ L  LR  G+L       E+M+NR
Sbjct: 1531 EMVLQQLRKAGQLKKHEELVEKMVNR 1556


>gi|297828902|ref|XP_002882333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328173|gb|EFH58592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 506

 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 176/372 (47%), Gaps = 12/372 (3%)

Query: 64  SSDDIESALA----CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYAWN 117
           S DD+   L+    C  +  +  LV+++L    D   SA+    WA   +G + S  A++
Sbjct: 64  SEDDVFKRLSNDEICNRVNLSDGLVYKLLHRFRDDWKSALGVLNWAESCKGHKHSNDAYD 123

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           + VD+LGK  +++++   V  M+ D +++L T A I   + GAG+++EAV  FD +   G
Sbjct: 124 MAVDILGKAKKWDRLKVFVERMRGDKLVTLNTIAKIMRRFAGAGEWEEAVGIFDKLGEFG 183

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           +E++  ++N LL  +C+ E +  +A   L  +K  + P+  +F I + GW K   VEEA 
Sbjct: 184 LEKNTESMNLLLDTLCK-EKRVEQARVVLLELKSHITPNAHTFNIFIHGWCKANRVEEAL 242

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
            T  EM +   + P  V++Y T +    +  +  +  + L  M+     P    ++  + 
Sbjct: 243 WTIQEM-KGHGFRP-CVISYTTIIRCYCQQSEFVKVYEMLSEMEANGSPPNSITYTTIMS 300

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH-EMIKNEW 356
            L    +   A+++    M   G  PDSL YN +   L ++ R+ E E+ F  EM +   
Sbjct: 301 SLNAQKEFEEALRV-ATRMKRSGCQPDSLFYNCLIHTLARSGRLEEAERVFRVEMPELGV 359

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL-PLEASANELLVGLRNLGRLSDVR 415
                   + I M    DE + AIE+   +  + +  P   +   LL      G + +V 
Sbjct: 360 SINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVG 419

Query: 416 RFAEEMLNRRIL 427
           +  +EM+ +  L
Sbjct: 420 KLLKEMVTKHHL 431



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 109/304 (35%), Gaps = 40/304 (13%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156
           AV  F   G  G   +  + NL++D L K  R EQ    +  +K     +  TF      
Sbjct: 172 AVGIFDKLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLELKSHITPNAHTFNIFIHG 231

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ--------------------- 195
           +C A + +EA+ +   M  HG    V++  +++   C+Q                     
Sbjct: 232 WCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQSEFVKVYEMLSEMEANGSPPN 291

Query: 196 -------------ENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFG 241
                        + +   AL    R+K+    PD   +  L+    + G +EEA + F 
Sbjct: 292 SITYTTIMSSLNAQKEFEEALRVATRMKRSGCQPDSLFYNCLIHTLARSGRLEEAERVF- 350

Query: 242 EMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGEN-CFPTLKFFSNALDIL 299
             VE  E     +   Y + +       + D+A++ L+ M+  N C P +  +   L   
Sbjct: 351 -RVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSC 409

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            K  D     +L   M+  H    D  TY  + + L +          F EMI  +  P 
Sbjct: 410 FKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANICEWAYCLFEEMISQDITPR 469

Query: 360 PLNC 363
              C
Sbjct: 470 HRTC 473


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 164/350 (46%), Gaps = 32/350 (9%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKE-----DGVLSLPTFASIFDSYCGAGKYDEAVMS 169
            +N++++ L + GR E+    +  M       DGV    T+ ++ + YC  G + +A++ 
Sbjct: 275 TYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGV----TYNTLVNGYCKVGNFHQALVL 330

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWE 228
              M  +G+  DVV   SL++ +C+  N  +RA+EF +++  + + P+G ++  L+ G+ 
Sbjct: 331 HSEMLRNGLPPDVVTYTSLINTMCKAGN-LNRAMEFFDQMHVRGLRPNGVTYTSLINGFS 389

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           ++G ++EA + + EM+      P  ++ Y   L       +++EA+  LR M+G+   P 
Sbjct: 390 QKGFMDEAYRIWDEMIR--SGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPD 447

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  +S  +    +  +   A Q+ +  MV  G  PD++TY+ + + L + +R++E    F
Sbjct: 448 VVSYSTIIAGFCRYQELDRAFQM-NAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLF 506

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            EM+     P      + I       +   A+ + + +++ G LP   + N L+ GL   
Sbjct: 507 QEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQ 566

Query: 409 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRC 458
            R  + +R                   L K FY+ES      +D+L   C
Sbjct: 567 ARTREAKRL------------------LLKLFYDESIPNGITYDTLIESC 598



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 152/340 (44%), Gaps = 8/340 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L+ +++N+++      G  E        M+ +  L ++ T+ ++  +YC   + DEA
Sbjct: 198 GVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEA 257

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILL 224
                 M + G+E +++  N +++ +CR  +  +TS  L  ++R  K   PDG ++  L+
Sbjct: 258 FKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDR--KGFAPDGVTYNTLV 315

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ K GN  +A     EM+      P  V+ Y + + T+ +   ++ A++F   M    
Sbjct: 316 NGYCKVGNFHQALVLHSEMLR--NGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRG 373

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P    +++ ++   +      A ++WD  M+  G  P  +TYN +      + R+ E 
Sbjct: 374 LRPNGVTYTSLINGFSQKGFMDEAYRIWD-EMIRSGFPPTIVTYNALLNGHCVSGRMEEA 432

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
                 M      P  ++ +T I       E + A ++   ++E G+ P   + + L+ G
Sbjct: 433 IGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQG 492

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           L    RL++     +EMLN+ +L  E T   L   +  E 
Sbjct: 493 LCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEG 532



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 160/355 (45%), Gaps = 36/355 (10%)

Query: 129 FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
           F+QM   VR ++ +GV    T+ S+ + +   G  DEA   +D M   G    +V  N+L
Sbjct: 366 FDQMH--VRGLRPNGV----TYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNAL 419

Query: 189 LSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           L+  C    +   A+  L  ++ K + PD  S++ ++ G+ +   ++ A +   EMVE+ 
Sbjct: 420 LNGHC-VSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEK- 477

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
             +P+ +  Y + +  L   ++++EA    + M  ++  P    +++ ++   K  D   
Sbjct: 478 GVSPDAI-TYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNE 536

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
           A+ L D  M+  G  PD++TYN++   L K  R  E ++   ++  +E  P  +   T I
Sbjct: 537 ALNLHD-EMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLI 595

Query: 368 TMLLDADEPEI---------------AIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
               D +   +               A +++  +++    P EA  N ++ G    G + 
Sbjct: 596 ESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVH 655

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS------MRDIFDSLERRCKTS 461
              +  +EM++   + + VT+  L KA Y+E         +RDI     R CK S
Sbjct: 656 KAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDIL----RSCKLS 706



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 110/263 (41%), Gaps = 25/263 (9%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +++    +GR E+    +R M+  G+   + ++++I   +C   + D A      M
Sbjct: 415 TYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEM 474

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              GV  D +  +SL+  +C Q         F   + K + PD  ++  L+ G+ KEG++
Sbjct: 475 VEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDL 534

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA     EM+++  + P+ V  Y   +  L +  +  EA + L  +  +   P    + 
Sbjct: 535 NEALNLHDEMIKK-GFLPDTV-TYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYD 592

Query: 294 NALD-----------ILVK-------LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
             ++            L+K       +N++    +     M+     P+   YN+I    
Sbjct: 593 TLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFE----SMIKRNQKPNEAVYNVIIHGH 648

Query: 336 IKNKRVHEVEKFFHEMIKNEWQP 358
            ++  VH+  K + EM+   + P
Sbjct: 649 CRDGNVHKAHKLYKEMVDFGFIP 671


>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 558

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 179/416 (43%), Gaps = 42/416 (10%)

Query: 70  SALACTGII--PTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGK 125
           ++LA  G+   P+  LV +VL    +    A+ FF+WA    G R SP  +NLMVD+LGK
Sbjct: 114 ASLALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAKSLTGYRHSPELYNLMVDILGK 173

Query: 126 NGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
              F+ M   V  M   +G ++L T   +      A K+++A+ +F  M   GV++D  A
Sbjct: 174 CRSFDSMSELVEEMARLEGYVTLETMTKVMRRLARARKHEDAIEAFGRMEKFGVKKDTAA 233

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           +N L+ A+ + ++    A + +   K  +     SF +L+ GW +  + + A K   +M 
Sbjct: 234 LNVLIDALVKGDS-VEHAHKVVLEFKGSIPLSSRSFNVLMHGWCRARDFDNARKAMEDMK 292

Query: 245 ER-FEWN--------------------------------PEHVLAYETFLITLIRGKQVD 271
           E  FE +                                P + + Y + ++ L +  Q+ 
Sbjct: 293 EHGFEPDVFSYTNFIEAYGHERDFRKVDQVLEEMRENGCPPNAVTYTSVMLHLGKAGQLR 352

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           +AL+    MK + C     F+S+ + IL K      A  +++ M    G   D +TYN +
Sbjct: 353 KALEVYEKMKSDGCVADTPFYSSMIFILGKAGRLKDACDVFEDMPK-QGVVRDVVTYNSM 411

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
                 + R     +   EM     +P        + M       ++   + +++ +N I
Sbjct: 412 ISTACAHSREETALRLLKEMEDGSCKPNVGTYHRLLKMCCKKKRMKVLKFLLDHMFKNNI 471

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
            P  A+ + L+  LR  G++ D   F EEM+ R       T+ KL      ES+SM
Sbjct: 472 SPDLATYSLLVNALRKSGKVEDAYSFLEEMVLRGFTPKPSTLKKLAGEL--ESKSM 525


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/407 (21%), Positives = 182/407 (44%), Gaps = 50/407 (12%)

Query: 80  TPDLVHEVLQ----LSYDSP-SSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQM 132
           +P + H V++    + +  P   ++ FF W+    G   SP  +N M+D+ GK  +F+  
Sbjct: 138 SPSVAHRVIEKCGGVRHGIPFLQSLAFFNWSSSLDGFPASPEPYNEMLDLAGKLRQFDLA 197

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           W+ + +MK  GV +++ TF+++   Y  AG   EAV +F+ M  +G   D+VA + ++S+
Sbjct: 198 WHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISS 257

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           +C++  + + A  F + +K   +PD   +  L+ GW + G++ +A + F +M  +     
Sbjct: 258 LCKKR-RANEAQSFFDSLKHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDM--KMAGIK 314

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            +V  Y   + +L R  Q+  A      M    C P    F++ + + VK   +   +++
Sbjct: 315 PNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKV 374

Query: 312 WDIM----------------------------------MVFHGAFPDSLTYNMIFECLIK 337
           ++ M                                  MV  G  P++ T+N IF C+ K
Sbjct: 375 YNQMKRLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAK 434

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
              V+   + +  M +   QP  L     + M  ++   ++ +++   + E+ + P   +
Sbjct: 435 LHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAESRSTDMVLKMKKEMDESQVEPNVNT 494

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRIL-----IYEVTMHKLKKA 439
              L+    ++   ++  +   EM+  + L     +YE  +  L+KA
Sbjct: 495 YRILISMFCDMKHWNNAYKLMMEMVEEKCLRPNLSVYETVLELLRKA 541



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 139/312 (44%), Gaps = 6/312 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           A+++++  L K  R  +  +    +K      +  + S+   +C AG   +A   F  M 
Sbjct: 250 AFSIVISSLCKKRRANEAQSFFDSLKHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMK 309

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           M G++ +V   + ++ ++CR   Q +RA + F   +    DP+  +F  L+    K G  
Sbjct: 310 MAGIKPNVYTYSIVIDSLCRC-GQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRT 368

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E+  K + +M +R    P   ++Y   + +  R + ++EA K L +M  +   P    F+
Sbjct: 369 EKVLKVYNQM-KRLGC-PADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFN 426

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
                + KL+D   A +++  M   +   P++LTYN++     +++    V K   EM +
Sbjct: 427 FIFGCIAKLHDVNGAHRMYARMKELNCQ-PNTLTYNILMRMFAESRSTDMVLKMKKEMDE 485

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE-LLVGLRNLGRLS 412
           ++ +P        I+M  D      A ++   ++E   L    S  E +L  LR  G+L 
Sbjct: 486 SQVEPNVNTYRILISMFCDMKHWNNAYKLMMEMVEEKCLRPNLSVYETVLELLRKAGQLK 545

Query: 413 DVRRFAEEMLNR 424
                 ++M+ R
Sbjct: 546 KHEELVDKMVAR 557


>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 614

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 192/442 (43%), Gaps = 48/442 (10%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG--QRLSPYAWNLM 119
           + S +++  AL       +  LV ++L+  ++    A   F+WA      R SP ++N M
Sbjct: 177 YPSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNSM 236

Query: 120 VDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
           VD+LGK   F  MW  V  M    G +SL T + +      AG++ EA+ +F  +  +G+
Sbjct: 237 VDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNIEKYGI 296

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
             D  A+N L+ A+ + E     A      +K  +  +  SF +L+ G+ K   ++EA K
Sbjct: 297 STDTTAMNVLMDALVK-EASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLDEAWK 355

Query: 239 TFGEMVERFEWNPEHVLAYETFL------------------------------ITLI--- 265
             GE VE+    P+ V++Y  F+                               T+I   
Sbjct: 356 IMGE-VEKSGLEPD-VISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHA 413

Query: 266 --RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
             + KQ++EALK    MK E C P   F+S+ + IL K    T   ++ + M    G  P
Sbjct: 414 LGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEK-QGVTP 472

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D LTYN +  C   + +         +M +   +P        + M       ++   + 
Sbjct: 473 DVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLL 532

Query: 384 NYILENGILPLEASANELLV-GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
           +++ +N +  +EA    +LV GL   G+L     F  EML++ ++  + T   LK+    
Sbjct: 533 DHMFKNDV-SIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKMLKEEL-- 589

Query: 443 ESRSMRDIFDSLERR--CKTSQ 462
           E +SM +    +E    C T+Q
Sbjct: 590 ERKSMLEEMKIIENLMFCATNQ 611


>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 192/442 (43%), Gaps = 48/442 (10%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG--QRLSPYAWNLM 119
           + S +++  AL       +  LV ++L+  ++    A   F+WA      R SP ++N M
Sbjct: 154 YPSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNSM 213

Query: 120 VDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
           VD+LGK   F  MW  V  M    G +SL T + +      AG++ EA+ +F  +  +G+
Sbjct: 214 VDILGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNIEKYGI 273

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
             D  A+N L+ A+ + E     A      +K  +  +  SF +L+ G+ K   ++EA K
Sbjct: 274 STDTTAMNVLMDALVK-EASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLDEAWK 332

Query: 239 TFGEMVERFEWNPEHVLAYETFL------------------------------ITLI--- 265
             GE VE+    P+ V++Y  F+                               T+I   
Sbjct: 333 IMGE-VEKSGLEPD-VISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHA 390

Query: 266 --RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
             + KQ++EALK    MK E C P   F+S+ + IL K    T   ++ + M    G  P
Sbjct: 391 LGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEK-QGVTP 449

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D LTYN +  C   + +         +M +   +P        + M       ++   + 
Sbjct: 450 DVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLL 509

Query: 384 NYILENGILPLEASANELLV-GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
           +++ +N +  +EA    +LV GL   G+L     F  EML++ ++  + T   LK+    
Sbjct: 510 DHMFKNDV-SIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKMLKEEL-- 566

Query: 443 ESRSMRDIFDSLERR--CKTSQ 462
           E +SM +    +E    C T+Q
Sbjct: 567 ERKSMLEEMKIIENLMFCATNQ 588


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 8/264 (3%)

Query: 98  AVDFFRWAGRGQ---RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASI 153
           ++ FF WA         SP+ +N M+D+ GK  +F+  W+ + +MK   V +S+ TF  +
Sbjct: 133 SLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTIL 192

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
              Y  AG   EAV  F+ M  +G   D +A + ++S + R+  + S A  F + +K   
Sbjct: 193 IRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKR-RASEAQSFFDSLKDRF 251

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           +PD   +  L+ GW + G + EA K F EM  +      +V  Y   +  L R  Q+  A
Sbjct: 252 EPDVIVYTNLVRGWCRAGEISEAEKVFKEM--KLAGIEPNVYTYSIVIDALCRCGQISRA 309

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
                 M    C P    F+N + + VK   +   +Q+++ M    G  PD++TYN + E
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKL-GCEPDTITYNFLIE 368

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQ 357
              +++ +    K  + MIK + +
Sbjct: 369 AHCRDENLENAVKVLNTMIKKKCE 392



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 113/251 (45%), Gaps = 7/251 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +++++D L + G+  +  +    M + G   +  TF ++   +  AG+ ++ +  ++ 
Sbjct: 291 YTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQ 350

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G E D +  N L+ A CR EN    A++ LN  +KK  + +  +F  +    EK+ 
Sbjct: 351 MKKLGCEPDTITYNFLIEAHCRDEN-LENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKR 409

Query: 232 NVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           +V  A++ + +M+E + E N    + Y   +   +  K  D  LK  + M  +   P + 
Sbjct: 410 DVNGAHRMYSKMMEAKCEPN---TVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVN 466

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +   + +   +    +A +L+  M+      P    Y M+   L +  ++ + E+   +
Sbjct: 467 TYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEK 526

Query: 351 MIKNEWQPTPL 361
           MI+      PL
Sbjct: 527 MIQKGLVARPL 537


>gi|357520891|ref|XP_003630734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524756|gb|AET05210.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 520

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 178/383 (46%), Gaps = 17/383 (4%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLG 124
           D+E +L       + DLV +VL+       SA  FF WA    G + S  +++++V++LG
Sbjct: 59  DLELSLTPFSTQISTDLVEQVLKRCNHLGFSAHRFFLWAKSIPGFQHSVQSFHILVEILG 118

Query: 125 KNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           ++ +F  +W+ +   +E      ++   F  IF +Y  A   D A+ SF  M   G++  
Sbjct: 119 RSKQFAILWDFLIETRESDSSCKITNEIFWIIFTAYSRADLPDGAIRSFVRMDEFGIKPS 178

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           ++ V+ LL  +C++++   +A +F ++VK        +++IL+ GW K G+  +A + F 
Sbjct: 179 IIDVDLLLYTLCKKKH-VRQAQQFFDQVKSHFLLTTKTYSILINGWGKIGDSGKARELFD 237

Query: 242 EMVERFEWNPEHV--LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
            M+E+      HV  LAY   L  L +G  VDEA+ FL  M  +   P    +S  +   
Sbjct: 238 AMLEQ----GCHVDLLAYNNLLEALCKGGHVDEAMDFLNDMLSKKVEPDAFTYSIFIRSY 293

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
              N+   A  + D M       P+  TYN I + L K K+V E  +   EMI +  +P 
Sbjct: 294 CDANNVHSAFGVLDKMRRC-NLLPNVFTYNCIIKRLCKIKKVEEAYQLLDEMISSGLKPD 352

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
             +         D  E   A+++ + + ++   P   + N +L  L  +GR        E
Sbjct: 353 TWSYNAIQAYHCDHCEVNRALKLISRMEKDVCFPDRHTYNMVLKLLIRIGRFDKATEVWE 412

Query: 420 EMLNRR----ILIYEVTMHKLKK 438
            M +++    +  Y V +H L K
Sbjct: 413 CMGDKKFYPSVSTYSVMIHGLCK 435



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 125/304 (41%), Gaps = 42/304 (13%)

Query: 93  DSPSSAV-DFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA 151
           D P  A+  F R    G + S    +L++  L K     Q       +K   +L+  T++
Sbjct: 158 DLPDGAIRSFVRMDEFGIKPSIIDVDLLLYTLCKKKHVRQAQQFFDQVKSHFLLTTKTYS 217

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVK 210
            + + +   G   +A   FD M   G   D++A N+LL A+C+       A++FLN  + 
Sbjct: 218 ILINGWGKIGDSGKARELFDAMLEQGCHVDLLAYNNLLEALCKG-GHVDEAMDFLNDMLS 276

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
           K V+PD  +++I +  +    NV  A     +M  R    P +V  Y   +  L + K+V
Sbjct: 277 KKVEPDAFTYSIFIRSYCDANNVHSAFGVLDKM-RRCNLLP-NVFTYNCIIKRLCKIKKV 334

Query: 271 DE-----------------------------------ALKFLRVMKGENCFPTLKFFSNA 295
           +E                                   ALK +  M+ + CFP    ++  
Sbjct: 335 EEAYQLLDEMISSGLKPDTWSYNAIQAYHCDHCEVNRALKLISRMEKDVCFPDRHTYNMV 394

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK-RVHEVEKFFHEMIKN 354
           L +L+++     A ++W+ M      +P   TY+++   L K K ++ E  K+F  MI  
Sbjct: 395 LKLLIRIGRFDKATEVWECMGD-KKFYPSVSTYSVMIHGLCKKKGKLEEACKYFAMMIDE 453

Query: 355 EWQP 358
              P
Sbjct: 454 GIPP 457


>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
 gi|238014984|gb|ACR38527.1| unknown [Zea mays]
 gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
          Length = 623

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 146/334 (43%), Gaps = 7/334 (2%)

Query: 63  ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMV 120
           AS + I   + C  +  +  LV +VL    +   +A  FF WAG  +     A  +++MV
Sbjct: 145 ASPEAIVITMDCCPVRVSARLVSKVLSRFSNDWVAAFGFFMWAGTQEGYCHCADSYDMMV 204

Query: 121 DVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
           D+LGK  +F+ M   +  M E  G++SL T   +    CGA ++ +A+ +F  M   GV 
Sbjct: 205 DILGKFKQFDLMCGLIGQMHEIGGLVSLATMTKVMRRLCGANRWSDAIDAFHKMDRFGVA 264

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
           +D  A+N LL  +C+ E    RA      +K  + PD  SF  L+ GW K   ++EA +T
Sbjct: 265 KDTKAMNVLLDTLCK-ERSVKRARGAFQALKGTIPPDESSFNTLVHGWCKARMLKEARET 323

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
             EM ER  ++P  V  Y   +      K        L  M  + C P +  ++  +  L
Sbjct: 324 MKEM-ERHGFSPS-VTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCTPNIITYTIVMHAL 381

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            K   +  A+  +D +    G   D+  YN +   L +  R+ +      EM +    P 
Sbjct: 382 GKAGRTQEALDTFDKVKQ-DGCALDASFYNCLIYILCRAGRLQDANFVVEEMHRTGISPN 440

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
                T I+   D    E A+++   + E    P
Sbjct: 441 LTTFNTLISAACDHSLAENALKLLVQMEEQSCNP 474



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 111/299 (37%), Gaps = 39/299 (13%)

Query: 96  SSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF 154
           S A+D F    R G      A N+++D L K    ++   A + +K        +F ++ 
Sbjct: 249 SDAIDAFHKMDRFGVAKDTKAMNVLLDTLCKERSVKRARGAFQALKGTIPPDESSFNTLV 308

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN----------------- 197
             +C A    EA  +   M  HG    V     L+ A C +++                 
Sbjct: 309 HGWCKARMLKEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMHTKGCT 368

Query: 198 -----------------QTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKT 239
                            +T  AL+  ++VK+     D   +  L+    + G +++AN  
Sbjct: 369 PNIITYTIVMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQDANFV 428

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
             EM  R   +P ++  + T +         + ALK L  M+ ++C P +K ++  L + 
Sbjct: 429 VEEM-HRTGISP-NLTTFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLC 486

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
            +       +      M      PD  TY ++   L +N R+ +   F  EM+   + P
Sbjct: 487 CR-RKWVKTLLFLICHMFRKDITPDFSTYTLLVCWLCRNGRLTQSCLFLEEMVLKGFTP 544


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 151/333 (45%), Gaps = 7/333 (2%)

Query: 96  SSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFA 151
           S A  FF     RG      A+N ++D L K G+  + W   + M        P   T+ 
Sbjct: 132 SEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYN 191

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
           ++ D +C   K DEA+  F  +   G   D V  NS+L  + R+ N       F   V  
Sbjct: 192 TLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDS 251

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
              P+G +++I+L G  + GN+    + + EM E+  ++P+ VL     +  L + K+VD
Sbjct: 252 GCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEK-RFSPD-VLLCNAVIDMLCKAKKVD 309

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           +A K L  M      P +  ++  LD L K N    A +L+   MV +G  PD ++Y+++
Sbjct: 310 DAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFST-MVDNGCAPDIVSYSVV 368

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
              L K  +VH+    F  MI+ +  P  +     +  L  A + + A ++ + + E+ +
Sbjct: 369 LNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNV 428

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           LP   +   L+ GL    R  +  R  + M+ +
Sbjct: 429 LPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEK 461



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 162/384 (42%), Gaps = 41/384 (10%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +   RG   +  A+N +++ L K+   E+ +  +  M   G      T+ +I    C 
Sbjct: 68  FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCR 127

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA---LEFLNRVKKIVDPD 216
            GK  EA   FD M   G   DVVA N LL A+  +E + + A    + ++   + V PD
Sbjct: 128 MGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDAL-YKEGKVAEAWGLFKTMDMADRKVAPD 186

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++  L++G+ +    +EA K F +++ +  + P+ V  Y + L+ L R   +DEA + 
Sbjct: 187 LITYNTLIDGFCRVEKTDEAMKLFKDVIAK-GYMPDTV-TYNSILLGLARKSNMDEAEEM 244

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--------------------- 315
            + M    C P    +S  L    ++ +    ++L++ M                     
Sbjct: 245 FKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCK 304

Query: 316 -------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                        M   GA PD +TYN++ + L K   V +  + F  M+ N   P  ++
Sbjct: 305 AKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVS 364

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
            +  +  L   ++   A  +++ ++E  ++P   + N L+ GL   G+L + +   + M 
Sbjct: 365 YSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMS 424

Query: 423 NRRILIYEVTMHKLKKAFYNESRS 446
              +L   VT   L      + R+
Sbjct: 425 EHNVLPDGVTCTTLMHGLCRDKRT 448



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 140/310 (45%), Gaps = 8/310 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ ++  L K G+  +    V  M E GV   + T+  I D  C AGK DEA   F  M 
Sbjct: 13  YSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMI 72

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
             G   + VA N+L++ +C+ EN   RA + L  +  K  +PD  ++  +L G  + G V
Sbjct: 73  ERGCSANTVAYNALINGLCKDEN-IERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKV 131

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV--MKGENCFPTLKF 291
            EA + F  M  R  ++P+ V+AY   L  L +  +V EA    +   M      P L  
Sbjct: 132 SEAKQFFDSMPSR-GYSPD-VVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLIT 189

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +D   ++  +  A++L+   ++  G  PD++TYN I   L +   + E E+ F +M
Sbjct: 190 YNTLIDGFCRVEKTDEAMKLFKD-VIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKM 248

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           + +   P     +  ++           +E++  + E    P     N ++  L    ++
Sbjct: 249 VDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKV 308

Query: 412 SDVRRFAEEM 421
            D  +  EEM
Sbjct: 309 DDAHKVLEEM 318



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 128/279 (45%), Gaps = 7/279 (2%)

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVK 210
           ++ D  C A K D+A    + MS  G   DVV  N LL  +C+  N   +A E F   V 
Sbjct: 297 AVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKT-NLVDKAHELFSTMVD 355

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
               PD  S++++L G  K   V +A   F  M+ER +  P+ V+ +   +  L +  ++
Sbjct: 356 NGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIER-KLVPD-VVTFNILMDGLCKAGKL 413

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
           DEA   L VM   N  P     +  +  L +   +  AV+L+  M V  G   D L +N+
Sbjct: 414 DEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYM-VEKGTVADVLPHNI 472

Query: 331 IFECLIKNKRVHEVEKFFHEMIKN--EWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           +   L +  ++ +   FF  M+K+  E+ P  +   T +  L++A   + A++ +  +  
Sbjct: 473 VLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTG 532

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           +G  P   + N L+ GLR  GR     R  + M  +  L
Sbjct: 533 SGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFL 571



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 125/257 (48%), Gaps = 11/257 (4%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M+  G E DVV  ++++S +C+   + + ALE +  + +K V+PD  ++ I+++   + G
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKT-GKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAG 59

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V+EA++ F +M+ER      + +AY   +  L + + ++ A K L  M  +   P    
Sbjct: 60  KVDEADELFHKMIER--GCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNIT 117

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH-- 349
           ++  L  L ++   + A Q +D  M   G  PD + YN + + L K  +V E    F   
Sbjct: 118 YNTILSGLCRMGKVSEAKQFFD-SMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTM 176

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           +M   +  P  +   T I      ++ + A++++  ++  G +P   + N +L+GL    
Sbjct: 177 DMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKS 236

Query: 410 RLSDVRRFAEEMLNRRI 426
            + +    AEEM  + +
Sbjct: 237 NMDE----AEEMFKKMV 249



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 2/180 (1%)

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           R+++   V  + TF  + D  C AGK DEA    DVMS H V  D V   +L+  +CR +
Sbjct: 387 RMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDK 446

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVL 255
                   F   V+K    D     I+L G  +EG + +A   F  MV+   E++P+ V+
Sbjct: 447 RTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPD-VV 505

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y T +  LI   +VD+A+ + + M G  C P    ++  ++ L K      A +L   M
Sbjct: 506 TYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAM 565



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 1/159 (0%)

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P +  +S  +  L K    T A+++ +  M   G  PD  TY +I + L +  +V E ++
Sbjct: 8   PDVVTYSTIISGLCKTGKVTEALEMVE-EMTEKGVNPDVATYTIIVDRLCRAGKVDEADE 66

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            FH+MI+       +     I  L   +  E A ++   +   G  P   + N +L GL 
Sbjct: 67  LFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLC 126

Query: 407 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            +G++S+ ++F + M +R      V  + L  A Y E +
Sbjct: 127 RMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGK 165


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 176/394 (44%), Gaps = 14/394 (3%)

Query: 35  PTRPRFPT-HLDAPYISSSARIICEILA-HASSDDIESALACTGIIPTPDLVHEVLQLSY 92
           P + RF   H +    +  A I  E+L    + + +E AL       + ++V++V++   
Sbjct: 16  PKQSRFRCLHANLFTTAQGAAISNEVLTVMETVNPMEDALEKLAPFLSSEIVNDVMR-EQ 74

Query: 93  DSPSSAVDFFRWAGRGQRLSPYAW---NLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLP 148
             P     FF W  R  R S  +W   NL++D+L K+  F+  W  +  +K   + +  P
Sbjct: 75  RRPELGFRFFIWTTR--RRSFRSWVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPP 132

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+ +  +Y  +G  ++AV SF  M   G + DV   NS+L  + ++E     AL   N+
Sbjct: 133 TFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKE-VFLLALAVYNQ 191

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + K+  +P+  +F ILL G  K G  ++A K F EM ++    P + + Y   L  L + 
Sbjct: 192 MLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQK--GIPPNTMIYTIILSGLCQA 249

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           K+ D+  + L  MK   C P     +  LD   KL     A  L  +     G       
Sbjct: 250 KRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEK-EGYVLGIKG 308

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y+ + + L + KR  EV+++  +M K   +P  +     I    +    + A+ + N + 
Sbjct: 309 YSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMT 368

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           + G+ P     N L+ G  ++G L   R    E+
Sbjct: 369 QRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEI 402



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 119/277 (42%), Gaps = 15/277 (5%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N ++D   K G+ ++ +  +++ +++G VL +  ++S+ D    A +YDE       M  
Sbjct: 275 NALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFK 334

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVE 234
            G+E DVV    L+   C +      AL  LN + ++ + PD   +  L++G+   G ++
Sbjct: 335 AGIEPDVVLYTILIRGFC-EVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLD 393

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A ++    + + +  P     Y   +  + R   +DEA +    M+   C P++  F+ 
Sbjct: 394 KA-RSLQLEISKNDCFPTSC-TYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNA 451

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPD-----SLTYNMIFECLIKNKRVHEVEKFFH 349
            +D L K  +   A  L+  M +  G  P      S   + + +      RV   E  F 
Sbjct: 452 LIDGLCKAGELEEARHLFYKMEI--GKNPSLFLRLSQGADRVMDTANGFHRVDREEDAFR 509

Query: 350 ---EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
              +M+KN   P+       +T      +  +A  +W
Sbjct: 510 VLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLW 546


>gi|413945076|gb|AFW77725.1| ATP binding protein isoform 1 [Zea mays]
 gi|413945077|gb|AFW77726.1| ATP binding protein isoform 2 [Zea mays]
 gi|413945078|gb|AFW77727.1| ATP binding protein isoform 3 [Zea mays]
          Length = 634

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 100/441 (22%), Positives = 186/441 (42%), Gaps = 42/441 (9%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSP 113
           I +++A  +  ++E+AL+         +V  VL     +   +  FFRWA    G   + 
Sbjct: 169 IADVVASGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATVSGGFTHTT 228

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
             +  M+ +LGK  +FE M   ++ M + G LS+  F     S+  AG+   AV  F++M
Sbjct: 229 ITYCKMLHILGKTRQFESMVAMIQEMGKAGALSMDAFKVAIKSFAAAGEIKNAVGVFELM 288

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             +G +  V + N LL A+ + E     A +  +++     PD  S+  L+  W    N+
Sbjct: 289 RKNGFDDGVESFNCLLVALAK-EGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNARNL 347

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN--------- 284
            EA + + EM+E+   +P+ V+ + T +  L+RG++  EA+K   +MK +          
Sbjct: 348 VEAGRVWNEMLEK-GMDPD-VVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYT 405

Query: 285 -----------------CFPTLKFFSNALDI------LVKLNDSTHAVQLWDIM--MVFH 319
                            CF  ++      D+      LV   ++    ++  ++  M   
Sbjct: 406 MLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQK 465

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP-EI 378
           G  PD+ TYN + + L       +  + + +MIK   +PT       +      D    +
Sbjct: 466 GCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFVGDSNYAM 525

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
              +W  + + GI P   S    + G    GR  +  ++ EEM+N+ +   ++  +K   
Sbjct: 526 GCAVWEEMHQRGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGMKAPQIDYNKFAA 585

Query: 439 AFYNESRSMRDIFDSLERRCK 459
            F    +   DI   L ++ K
Sbjct: 586 DFSKAGKP--DILFELAQKVK 604


>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 537

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 126/264 (47%), Gaps = 8/264 (3%)

Query: 98  AVDFFRWAGRGQ---RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASI 153
           ++ FF WA       + SP+ +N M+D+ GK  +F+  W+ + +MK   V +S+ TF  +
Sbjct: 133 SLAFFNWATSRDDYDQKSPHPYNEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFTIL 192

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
              Y  AG   EAV  F+ M  +G   D +A + ++S + R+  + S A  F + +K   
Sbjct: 193 IRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVISNLSRKR-RASEAQSFFDSLKDRF 251

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           +PD   +  L+ GW + G + EA K F +M  +      +V  Y   +  L R  Q+  A
Sbjct: 252 EPDVIVYTNLVRGWCRAGEISEAEKVFKDM--KLAGIEPNVYTYSIVIDALCRCGQISRA 309

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
                 M    C P    F+N + + VK       +Q+++ M    G  PD++TYN + E
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKL-GCEPDTITYNFLIE 368

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQ 357
              +++ +    K  + MIK + +
Sbjct: 369 THCRDENLENAVKVLNTMIKKKCE 392



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 140/329 (42%), Gaps = 6/329 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           F R    G      A+++++  L +  R  +  +    +K+     +  + ++   +C A
Sbjct: 209 FNRMEDYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRA 268

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDS 219
           G+  EA   F  M + G+E +V   + ++ A+CR   Q SRA + F + +     P+  +
Sbjct: 269 GEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRC-GQISRAHDVFADMLDSGCAPNAIT 327

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  L+    K G  E+  + + +M ++    P+  + Y   + T  R + ++ A+K L  
Sbjct: 328 FNNLMRVHVKAGRPEKVLQVYNQM-KKLGCEPD-TITYNFLIETHCRDENLENAVKVLNT 385

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M  + C      F+     + K  D   A +++  MM      P+++TYN++      +K
Sbjct: 386 MIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCE-PNTVTYNILMRMFAGSK 444

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
               V K   +M   E +P        +TM         A +++  ++E   L    S  
Sbjct: 445 STDMVLKMKKDMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLY 504

Query: 400 EL-LVGLRNLGRLSDVRRFAEEMLNRRIL 427
           E+ L  LR  G+L       E+M+ + ++
Sbjct: 505 EMVLAQLRRAGQLKKHEELVEKMIQKGLV 533



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 111/251 (44%), Gaps = 7/251 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +++++D L + G+  +  +    M + G   +  TF ++   +  AG+ ++ +  ++ 
Sbjct: 291 YTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQ 350

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G E D +  N L+   CR EN    A++ LN  +KK  + +  +F  +    EK+ 
Sbjct: 351 MKKLGCEPDTITYNFLIETHCRDEN-LENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKR 409

Query: 232 NVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           +V  A++ + +M+E + E N    + Y   +      K  D  LK  + M  +   P + 
Sbjct: 410 DVNGAHRMYSKMMEAKCEPN---TVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVN 466

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +   + +   +    +A +L+  M+      P    Y M+   L +  ++ + E+   +
Sbjct: 467 TYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEK 526

Query: 351 MIKNEWQPTPL 361
           MI+      PL
Sbjct: 527 MIQKGLVTRPL 537


>gi|357450985|ref|XP_003595769.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484817|gb|AES66020.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 497

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 189/435 (43%), Gaps = 29/435 (6%)

Query: 20  SSSTTTSPTS--HNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGI 77
           ++S  T P+S   NP   +     +H D+P ++S  + + +      ++ IE AL   GI
Sbjct: 34  NTSEPTFPSSFPQNPRNSSSRFLHSHHDSPPLASFIQNLLKFRRDKPTEQIEQALNLIGI 93

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNA 135
            P  +LV +VLQ        A  FF+W  +    +P    +N ++++LGK   FE++   
Sbjct: 94  HPNNNLVLQVLQRHRSDWKPAFIFFKWVSKTNNYTPSCEVYNEIINILGKMKCFEELHQV 153

Query: 136 VRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV--EQDVVAVNSLLSAI 192
           +  M +    ++  TF  +   +  A K +EA+  F      G+  E D  A  +LL  +
Sbjct: 154 LDEMSQRKEFINEETFCILIRRFVAAHKLEEAINIFYRREEFGLDNELDSKAFRTLLMWM 213

Query: 193 CRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN-----------KTF 240
           CR ++ + +  L   N  K     D  ++ ++L GW   GN  EA            K  
Sbjct: 214 CRYKHIEEAETLFHRNLNKFRFCRDIKTWNVILNGWCVLGNTHEAKRLWKDIIAYKCKEI 273

Query: 241 GEMVERFEWNPEH------VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           G   E  +W+ E       V+ +   +  L   K++ EAL+    MK  +C P +  +++
Sbjct: 274 GNCFEVVQWDVEEESCKPDVVIFNCLIDGLCFKKRIPEALQVFHDMKERDCLPNVATYNS 333

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHG-AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
            +  L K+       +L + M    G   P+ +TY+ + + L   K   EV      M +
Sbjct: 334 LIKHLFKIRRMEKVYELVEDMERRSGDCLPNGVTYSYLLQSL---KAPEEVPAVLERMER 390

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           N    +   C   + + +  D+ +   + W+ +  NG+ P   S   ++ G    GR  D
Sbjct: 391 NGCAMSDDICNLILRLYMKWDDLDGLRKTWDEMERNGLGPDRRSYTIMIHGHYENGRTKD 450

Query: 414 VRRFAEEMLNRRILI 428
             R+ +EM ++ I++
Sbjct: 451 AMRYFQEMTSKGIVL 465


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 176/394 (44%), Gaps = 14/394 (3%)

Query: 35  PTRPRFPT-HLDAPYISSSARIICEILA-HASSDDIESALACTGIIPTPDLVHEVLQLSY 92
           P + RF   H +    +  A I  E+L    + + +E AL       + ++V++V++   
Sbjct: 16  PKQSRFRCLHANLFTTAQGAAISNEVLTVMETVNPMEDALEKLAPFLSSEIVNDVMR-EQ 74

Query: 93  DSPSSAVDFFRWAGRGQRLSPYAW---NLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLP 148
             P     FF W  R  R S  +W   NL++D+L K+  F+  W  +  +K   + +  P
Sbjct: 75  RRPELGFRFFIWTTR--RRSFRSWVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPP 132

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+ +  +Y  +G  ++AV SF  M   G + DV   NS+L  + ++E     AL   N+
Sbjct: 133 TFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKE-VFLLALAVYNQ 191

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + K+  +P+  +F ILL G  K G  ++A K F EM ++    P + + Y   L  L + 
Sbjct: 192 MLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQK--GIPPNTMIYTIILSGLCQA 249

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           K+ D+  + L  MK   C P     +  LD   KL     A  L  +     G       
Sbjct: 250 KRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEK-EGYVLGIKG 308

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y+ + + L + KR  EV+++  +M K   +P  +     I    +    + A+ + N + 
Sbjct: 309 YSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMT 368

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           + G+ P     N L+ G  ++G L   R    E+
Sbjct: 369 QRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEI 402



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 138/319 (43%), Gaps = 17/319 (5%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L    ++ ++D L +  R++++    R M + G+   +  +  +   +C  G  D A
Sbjct: 301 GYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYA 360

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLE 225
           +   + M+  G+  D    N+L+   C       +R+L+ L   K    P   ++ IL+ 
Sbjct: 361 LNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQ-LEISKNDCFPTSCTYTILIC 419

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK-FLRVMKGEN 284
           G  + G ++EA + F +M E    +P  ++ +   +  L +  +++EA   F ++  G+N
Sbjct: 420 GMCRNGLLDEARQIFNQM-ENLGCSPS-IMTFNALIDGLCKAGELEEARHLFYKMEIGKN 477

Query: 285 CFPTLKFFSNA--------LDILV-KLNDSTHAVQLWDIMMVF--HGAFPDSLTYNMIFE 333
               L+    A        L  +V +L +S   ++ + ++M     G  PD +TYN++  
Sbjct: 478 PSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLIN 537

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
              K K ++   K F E+      P  +   T I      D  E A  + + +++NG  P
Sbjct: 538 GFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTP 597

Query: 394 LEASANELLVGLRNLGRLS 412
             A    L+      G+LS
Sbjct: 598 SSAVYKCLMTWSCRKGKLS 616



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 3/133 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++ D +    + ++A    D M  +G          L++  CR+   +     +L  
Sbjct: 566 TYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKY 625

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           ++ +   + ++  +  E +EK G +E+A +   EM   F+ N   +  Y  +LI L + +
Sbjct: 626 LRSLPSQEDETLKLAEEHFEK-GELEKAVRCLLEM--NFKLNNFEIAPYTIWLIGLCQAR 682

Query: 269 QVDEALKFLRVMK 281
           + +EALK   V+K
Sbjct: 683 RSEEALKIFLVLK 695


>gi|125540181|gb|EAY86576.1| hypothetical protein OsI_07956 [Oryza sativa Indica Group]
 gi|125582780|gb|EAZ23711.1| hypothetical protein OsJ_07414 [Oryza sativa Japonica Group]
 gi|215768726|dbj|BAH00955.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 500

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 149/327 (45%), Gaps = 15/327 (4%)

Query: 52  SARIICEILAHA---SSDDIESALA--CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG 106
           +AR+I   L+ A   S  D+   L   C+GI  T ++V  +L    D   SA+ FF+WA 
Sbjct: 48  AARLIKNSLSKARKWSVQDLIQCLGADCSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQ 107

Query: 107 R--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYD 164
                R + YA N MVD+LGK  + +QMW  +  M   G++++ T A       GA ++ 
Sbjct: 108 SRDDYRHTAYACNRMVDLLGKMRQIDQMWELLSDMHGRGLVTVETVAKSIRRLAGARRWK 167

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           + V+ FD +   G+E++   +N LL  +C+ E +   A E    +   + PD  +F I +
Sbjct: 168 DVVLLFDKLEDMGLERNTETMNVLLDVLCK-ERKIEVAREVFAVLSPHIPPDAYTFNIFV 226

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            GW     ++EA  T  EM  R    P  V+ Y T L    + +      + L  M  + 
Sbjct: 227 HGWCSIRRIDEAMWTIEEMKRR--GFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQG 284

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C P +  ++  +  L K      A+ +    M   G  PD+L YN +   L K+  + E 
Sbjct: 285 CHPNVITYTMIMTSLAKCERFEEALSV-SHRMKSSGCKPDTLFYNSLINLLGKSGHLFEA 343

Query: 345 EKFFH-EMIKNEWQPTPLNCATAITML 370
            + F  EM  N       N AT  TM+
Sbjct: 344 SQVFRVEMPMN---GVSHNLATYNTMI 367



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 114/270 (42%), Gaps = 16/270 (5%)

Query: 130 EQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
           E MW  +  MK  G   S+ T+ ++ ++YC    +       D M   G   +V+    +
Sbjct: 237 EAMWT-IEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMI 295

Query: 189 LSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           ++++ + E +   AL   +R+K     PD   +  L+    K G++ EA++ F   VE  
Sbjct: 296 MTSLAKCE-RFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVF--RVEMP 352

Query: 248 EWNPEHVLA-YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
                H LA Y T +       + D+AL  L+ M+ ++C P ++ +   L + +      
Sbjct: 353 MNGVSHNLATYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQA 412

Query: 307 HAVQ-LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
             V+ L   +   H    D  TY ++   L +        + F EM+ +E  P    C  
Sbjct: 413 DTVRHLLSELTSKHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEMVSSEIAPRSKTCV- 471

Query: 366 AITMLLDADEP---EIAIE-IWNYILENGI 391
              MLLD  +    E  +E I NY+   GI
Sbjct: 472 ---MLLDEAQRTNMETYVERIGNYMSSFGI 498


>gi|225437663|ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Vitis vinifera]
          Length = 526

 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 187/436 (42%), Gaps = 48/436 (11%)

Query: 42  THLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ---LSYDSPSSA 98
           T +D   + +  RI+    + +S+ +++ +L  +G+  + DL+ +VL+    S+ +P  A
Sbjct: 53  TTVDNGDVETVFRIVS---SASSTRNLKQSLKSSGVFLSNDLIDKVLKRVRFSHGNPFQA 109

Query: 99  VDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM--KEDGVLSLPTFASIF 154
           + FF +  +  G   +P++ + M+ +LG++ RF+Q+W  +  M  K+  ++S  +   + 
Sbjct: 110 LAFFNYTNKRKGFYHTPFSLDTMLYILGRSRRFDQIWELLVDMRRKDQSLISPRSVQVVL 169

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
                     + V SF        E D    N+LL  +C QE     A    + +K    
Sbjct: 170 GRIAKVCSVKQTVESFRKFKKLVPEFDTACFNALLRTLC-QEKSMRDARNVYHSLKHDFR 228

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVE----------------------------- 245
           PD  +F ILL GW+   + EEA   F EM E                             
Sbjct: 229 PDLRTFNILLSGWK---SAEEAEGFFDEMREMGVEPDVVSYNCLIDVYCKGREIERAYKV 285

Query: 246 ----RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
               R E     V++Y + +  L    Q D+A   L+ MK   C+P +  ++ A+     
Sbjct: 286 IDKMRDEQISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDVAAYNAAIRNFCI 345

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
            N    A  L D  MV  G  P++ TYN+ F C   +  +      +  M K    P   
Sbjct: 346 ANRLGDADGLMD-EMVGKGLSPNATTYNLFFRCFYWSNDLGRSCGLYQRMKKTGCLPNTQ 404

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           +C     +    ++ E+A+E+WN ++E G       ++ L   L ++G+L +V +   +M
Sbjct: 405 SCMFLTRLFRRQEKVEMALELWNDMVEKGFGSYILVSDVLFDMLCDMGKLVEVEKCCLQM 464

Query: 422 LNRRILIYEVTMHKLK 437
           + +      V+  ++K
Sbjct: 465 IEKGHKPSNVSFRRIK 480


>gi|255547888|ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546052|gb|EEF47555.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 466

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 158/350 (45%), Gaps = 11/350 (3%)

Query: 44  LDAPYISSSARIICEILAHASSDDIESALA----CTGIIPTPDLVHEVLQLSYDSPSSAV 99
           LD+   S    I+ +I   +S D+I  +L     C  I  + +LV ++L    D   SA+
Sbjct: 10  LDSKRQSDIDVIVAKIRVGSSHDEIVQSLVHDEVCNSIHLSHELVDKLLFRFKDDWKSAL 69

Query: 100 DFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY 157
             FRWA    G + SP A++ MVD++GK  + +QM   +  M++   ++L T       +
Sbjct: 70  GVFRWAESRAGYKHSPEAYDTMVDIMGKMKQMDQMEFLLEEMEKGQHVTLKTVGKAMRRF 129

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
            GA +++  +  FD +   G+E++  ++N LL  +C+ E +   A E    +K  + P+ 
Sbjct: 130 AGARQWENVLRVFDKLGTFGLEKNTESMNLLLDTLCK-ERKVELAREIFLDLKSHISPNA 188

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
           ++F I + GW K   VEEA  T  EM  +       V++Y T +          +  + L
Sbjct: 189 NTFNIFIHGWCKVNRVEEAYWTIQEM--KGHGCTPCVISYSTIVQFYCHRSNFSKVYELL 246

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M+ +   P +  +++ +  L K  +   A+Q+   M    G  PD+L YN +   L K
Sbjct: 247 DEMEAQGLIPNVVTYTSVMSALAKSEEYEEALQIAQRMKSV-GCKPDTLFYNSLIHTLGK 305

Query: 338 NKRVHEVEKFFH-EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
             R  E  + F  EM      P      + I ML    +   A+ +   I
Sbjct: 306 AGRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAMLCHHSQERKALNLLKEI 355


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 163/393 (41%), Gaps = 58/393 (14%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG       +N ++D L K G  E+       M     + ++ T++ + +  C  G+ DE
Sbjct: 245 RGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDE 304

Query: 166 AVMSFDVMSMHGVE--QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI---VDPDGDSF 220
           A      M+    +   +++  NS L  +C+Q + T+ A E +  ++     V PD  +F
Sbjct: 305 ARELIQEMTRKSCDVLPNIITYNSFLDGLCKQ-SMTAEACELMRSLRDGSLRVSPDTVTF 363

Query: 221 AILLEGWEKEGNVEEANKTFGEMV------------------------ERFEWNPEH--- 253
           + L++G  K G ++EA   F +M+                        ER     E    
Sbjct: 364 STLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVD 423

Query: 254 ------VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
                 V+ Y   +    +  +VDEAL+ L  M    C P +  F++ +D L K + S  
Sbjct: 424 KGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGE 483

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP----LNC 363
           A Q++D M + HG  PD +TY  + + L +  R  + E     M      P P     NC
Sbjct: 484 AFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAM------PDPDTYAFNC 537

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
              I  L    +   A++++N +LE  ++P + + N L+ G    G         EEM+ 
Sbjct: 538 --CINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVA 595

Query: 424 RR----ILIYEVTMHKLKKAFYNESRSMRDIFD 452
           +     ++ +   +  L KA   +  + RDI D
Sbjct: 596 KNLQPDVMTFGALIDGLCKA--GQVEAARDILD 626



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 155/341 (45%), Gaps = 11/341 (3%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           R+SP    ++ ++D L K G+ ++  +    M   G V ++ T+ ++ +  C A K + A
Sbjct: 355 RVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERA 414

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLE 225
               + M   GV  DV+  + L+ A C+  ++   ALE L+ +  +   P+  +F  +++
Sbjct: 415 HAMIESMVDKGVTPDVITYSVLVDAFCKA-SRVDEALELLHGMASRGCTPNVVTFNSIID 473

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K     EA + F +M  +    P+ +  Y T +  L R  +  +A   L  M     
Sbjct: 474 GLCKSDRSGEAFQMFDDMALKHGLVPDKI-TYCTLIDGLFRTGRAGQAEALLDAMPD--- 529

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    F+  ++ L KL D + A+Q+++ M+      PD +T+N++     K     +  
Sbjct: 530 -PDTYAFNCCINGLSKLGDVSRALQVYNRMLELE-LVPDKVTFNILIAGACKAGNFEQAS 587

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             F EM+    QP  +     I  L  A + E A +I + +   G+ P   + N L+ GL
Sbjct: 588 ALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGL 647

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446
              GR+ +  +F EEM++   +   +T   L  A    SR+
Sbjct: 648 CKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRT 688



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 151/363 (41%), Gaps = 43/363 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++++VD   K  R ++    +  M   G   ++ TF SI D  C + +  EA   FD M+
Sbjct: 433 YSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMA 492

Query: 175 M-HGVEQDVVAVNSLLSAICR------------------------------QENQTSRAL 203
           + HG+  D +   +L+  + R                              +    SRAL
Sbjct: 493 LKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRAL 552

Query: 204 EFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           +  NR+ ++ + PD  +F IL+ G  K GN E+A+  F EMV +    P+ V+ +   + 
Sbjct: 553 QVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAK-NLQPD-VMTFGALID 610

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
            L +  QV+ A   L +M      P +  ++  +  L K      A Q  +  MV  G  
Sbjct: 611 GLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLE-EMVSSGCV 669

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           PDS+TY  +   L +  R  +  +   E+    W P  +     +  L  + + E AI +
Sbjct: 670 PDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITV 729

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR-------RILIYEVTMHK 435
              ++  G  P   + N L+  L   G L + RR   +M +R        ++ Y V ++ 
Sbjct: 730 LEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLING 789

Query: 436 LKK 438
           L K
Sbjct: 790 LCK 792



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 146/369 (39%), Gaps = 62/369 (16%)

Query: 106  GRGQRLSPYAWNLMVDVLGKNGRFEQMWN-----AVRVMKEDGVLSLPTFASIFDSYCGA 160
            G+G       +N ++D L K G  E+        + RV +   V ++ T++ + +  C  
Sbjct: 735  GKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRC-CVPNVVTYSVLINGLCKV 793

Query: 161  GKYDEAVMSFDVMSMHGVE--QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI---VDP 215
            G+ DEA      M     +   +++  NS L  +C+Q +  + A E +  ++     V P
Sbjct: 794  GRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQ-SMMAEACELMRSLRDGSLRVSP 852

Query: 216  DGDSFAILLEGWEKEGNVEEANKTFGEMV------------------------ERFEWNP 251
            D  +F+ L++G  K G  +EA   F +M+                        ER     
Sbjct: 853  DTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMI 912

Query: 252  EH---------VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
            E          V+ Y   +    +   VDEAL+ L  M    C P +  F++ +D L K 
Sbjct: 913  ESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKS 972

Query: 303  NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP-- 360
            + S  A Q++D M + HG  PD +TY  + + L +     + E     M      P P  
Sbjct: 973  DQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAM------PDPDT 1026

Query: 361  --LNCA-TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
               NC    ++ L D           + +LE  ++P + + N L+ G    G        
Sbjct: 1027 YAFNCCINGLSKLGDVSRA------LHRMLELELVPDKVTFNILIAGACKAGNFEQASAL 1080

Query: 418  AEEMLNRRI 426
             EEM+ + +
Sbjct: 1081 FEEMVAKNL 1089



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 122/262 (46%), Gaps = 6/262 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRAL--EF 205
           T+  + D    +G+ ++A+   + M   G   DVV  N+L+ ++C+  + + +R L  + 
Sbjct: 709 TYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDM 768

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
            +RV +   P+  ++++L+ G  K G ++EA +   EM+ +      +++ Y +FL  L 
Sbjct: 769 SSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLC 828

Query: 266 RGKQVDEALKFLRVMKGEN--CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           +   + EA + +R ++  +    P    FS  +D L K   +  A  ++D M+   G  P
Sbjct: 829 KQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIA-GGYVP 887

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           + +TYN++   L K  ++         M+     P  +  +  +     A   + A+E+ 
Sbjct: 888 NVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELL 947

Query: 384 NYILENGILPLEASANELLVGL 405
           + +   G  P   + N ++ GL
Sbjct: 948 HGMASRGCTPNVVTFNSIIDGL 969



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 163/372 (43%), Gaps = 23/372 (6%)

Query: 88  LQLSYDSPSSAVDFFRWAGRGQRLSP------YAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           L +   SP+ A+D FR      RL P      + ++ ++    K G   +          
Sbjct: 120 LLVKSGSPAKAIDLFR-----SRLPPRCRPNHFTYSTLLRATYKAGGDVERTLGFFRRIR 174

Query: 142 DGVLSLPTFASIFDSYCGAGKYDEAVMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
               S+  +  +  S C AG+   A+  F   M+  GV   +V  N++++ +C+  N+  
Sbjct: 175 SSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKS-NELG 233

Query: 201 RALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
             +E F   V++   PD  ++  L++   K G++EEA +  G+M  R    P +V+ Y  
Sbjct: 234 AGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSR-SCVP-NVVTYSV 291

Query: 260 FLITLIRGKQVDEALKFLRVMKGENC--FPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
            +  L +  ++DEA + ++ M  ++C   P +  +++ LD L K + +  A +L  +  +
Sbjct: 292 LINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACEL--MRSL 349

Query: 318 FHGAF---PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
             G+    PD++T++ + + L K  ++ E    F +MI   + P  +     +  L  AD
Sbjct: 350 RDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKAD 409

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
           + E A  +   +++ G+ P   + + L+       R+ +       M +R      VT +
Sbjct: 410 KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFN 469

Query: 435 KLKKAFYNESRS 446
            +        RS
Sbjct: 470 SIIDGLCKSDRS 481



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 122/303 (40%), Gaps = 43/303 (14%)

Query: 116  WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDV 172
            +N  +D L K     +    +R +++  +   P   TF+++ D  C  G+ DEA   FD 
Sbjct: 820  YNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDD 879

Query: 173  MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
            M   G   +VV  N L++ +C+ +          + V K V PD  ++++L++ + K  +
Sbjct: 880  MIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASH 939

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF------ 286
            V+EA +    M  R    P +V+ + + +  L +  Q  EA +    M  ++        
Sbjct: 940  VDEALELLHGMASR-GCTP-NVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKIT 997

Query: 287  --------------------------PTLKFFSNALDILVKLNDSTHAV-QLWDIMMVFH 319
                                      P    F+  ++ L KL D + A+ ++ ++ +V  
Sbjct: 998  YCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELELV-- 1055

Query: 320  GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
               PD +T+N++     K     +    F EM+    QP  +     I  L  A + E  
Sbjct: 1056 ---PDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAT 1112

Query: 380  IEI 382
             +I
Sbjct: 1113 WDI 1115


>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 171/398 (42%), Gaps = 37/398 (9%)

Query: 23  TTTSPTSHNPH---RPTRPRFPTHLDAP-YISSSARIICEILAHASSDDIESALACTGII 78
           + +SP +H+       T  + P  L +  YI+  +RI+ +        D+E  L      
Sbjct: 20  SLSSPKTHHSRLFSSQTILQDPNSLSSSQYINEISRILSDF--RDPHHDLERPLTAFSQK 77

Query: 79  PTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV 138
            TP LV +VL+   +   SA           +  P  W+ + D                 
Sbjct: 78  ITPGLVEQVLKRCKNLGFSA--------HSSKQFPLIWDFLSD----------------- 112

Query: 139 MKEDGVLSL--PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           M+E     +    F  IF +YC A    +A+ +F  M   GV+  V  V+ LL  +C+++
Sbjct: 113 MRETRCCEICPEIFWLIFRAYCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRK 172

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +   +A EF ++V   V P+  +++IL+ GW   G+  EA K F EM ER       V+A
Sbjct: 173 H-VKQAQEFFDKVNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMRER--GCAVDVVA 229

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           Y + L  L +G  VDEA K  R M      P    +S  +    ++ND   A Q+ D M 
Sbjct: 230 YNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMR 289

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
            ++   P+  TYN I + L K+++V E  +   EMI+    P   +         D  E 
Sbjct: 290 RYN-LVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEV 348

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
             A+ + + + +   +P   + N +L  L  +GR   V
Sbjct: 349 NKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRV 386



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 107/223 (47%), Gaps = 7/223 (3%)

Query: 139 MKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M+E G  + +  + S+ ++ C  G  DEA   F  M  +G+  D  + +  + A C + N
Sbjct: 218 MRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYC-EVN 276

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
               A + L+R+++  + P+  ++  +++   K   V+EA +   EM+ER   +P+ + +
Sbjct: 277 DIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIER-GVSPD-LWS 334

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           Y           +V++AL+ +  M+ ENC P    ++  L +L+++        +W  M 
Sbjct: 335 YNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGME 394

Query: 317 VFHGAFPDSLTYNMIFECLIKNK-RVHEVEKFFHEMIKNEWQP 358
              G +P + TY ++     K K ++ E  K+F  MI +   P
Sbjct: 395 E-RGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGIPP 436



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 2/169 (1%)

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
           +  L  L + K V +A +F   +  E   P  K +S  +     + DS+ A +L++ M  
Sbjct: 162 DQLLYVLCKRKHVKQAQEFFDKVNVE-VMPNAKTYSILMRGWGDVGDSSEARKLFEEMRE 220

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
             G   D + YN + E L K   V E  K F EM  N   P   + +  I    + ++  
Sbjct: 221 -RGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIH 279

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            A ++ + +    ++P   + N ++  L    ++ +  +  +EM+ R +
Sbjct: 280 SAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGV 328


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 170/384 (44%), Gaps = 45/384 (11%)

Query: 98  AVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIF 154
           ++ FF WA    G   SP  +N M+D+ GK   F+  W+ + +MK  GV +++ TF+ + 
Sbjct: 126 SLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLV 185

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
             Y  AG   EAV +F+ M  +G + D V+ + ++S++C++  + S A  F + +K   +
Sbjct: 186 RRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKR-RASEAELFFDSLKHKFE 244

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD   +  L+ GW + G++ +A + F +M E       +V  Y   + +L R  Q+  A 
Sbjct: 245 PDVIVYTSLVHGWCRAGDIAKAEEVFSDMKE--AGVKPNVYTYSIVIDSLCRCGQITRAH 302

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM------------------- 315
                M    C P    F++ + + VK   +   +Q+++ M                   
Sbjct: 303 DVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESH 362

Query: 316 ---------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
                          MV  G  P++ T+N IF C+ +   V+   + + +M + +  P  
Sbjct: 363 CKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNT 422

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 420
           L     + M  D+   ++ +++   + E+ + P   +   L++     G  ++     +E
Sbjct: 423 LTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWNNAYNLMKE 482

Query: 421 MLNRRIL-----IYEVTMHKLKKA 439
           M+  + L     IYE  +  L+ A
Sbjct: 483 MVEEKCLKPNLSIYETVLELLRNA 506



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 140/326 (42%), Gaps = 6/326 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           F R    G +    ++++++  L K  R  +       +K      +  + S+   +C A
Sbjct: 201 FNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKHKFEPDVIVYTSLVHGWCRA 260

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDS 219
           G   +A   F  M   GV+ +V   + ++ ++CR   Q +RA + F   +    DP+  +
Sbjct: 261 GDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRC-GQITRAHDVFSEMIDAGCDPNAVT 319

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  L+    K G  E+  + + +M +R     +  ++Y   + +  + + +DEA+K L  
Sbjct: 320 FNSLMRVHVKAGRTEKVLQVYNQM-KRLGCAAD-TISYNFLIESHCKDENLDEAVKVLDT 377

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M  +   P    F++    + +L+D   A +++  M       P++LTYN++      +K
Sbjct: 378 MVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKEL-KCMPNTLTYNILMRMFADSK 436

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
            +  V K   EM ++E +P        I M  +      A  +   ++E   L    S  
Sbjct: 437 SIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIY 496

Query: 400 E-LLVGLRNLGRLSDVRRFAEEMLNR 424
           E +L  LRN G+L       E+M+ R
Sbjct: 497 ETVLELLRNAGQLKKHEELVEKMVAR 522



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/256 (19%), Positives = 107/256 (41%), Gaps = 4/256 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G + + Y +++++D L + G+  +  +    M + G   +  TF S+   +  AG+ ++ 
Sbjct: 277 GVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKV 336

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +  ++ M   G   D ++ N L+ + C+ EN           VKK V P+  +F  +   
Sbjct: 337 LQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGC 396

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             +  +V  A++ + +M E  +  P + L Y   +      K +D  LK  + M      
Sbjct: 397 IAELHDVNGAHRMYAKMKE-LKCMP-NTLTYNILMRMFADSKSIDMVLKLKKEMDESEVE 454

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P +  +   + +  +     +A  L   M+      P+   Y  + E L    ++ + E+
Sbjct: 455 PNVNTYRILILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAGQLKKHEE 514

Query: 347 FFHEMIKNEW-QPTPL 361
              +M+   +  P PL
Sbjct: 515 LVEKMVARGFVSPRPL 530


>gi|413937640|gb|AFW72191.1| hypothetical protein ZEAMMB73_762171 [Zea mays]
          Length = 503

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 138/298 (46%), Gaps = 10/298 (3%)

Query: 63  ASSDDIESALA--CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA---GRGQRLSPYAWN 117
            S +D+  ALA  C+ +  T  +   +L+   D    A+ FF WA   G G   +PYA +
Sbjct: 64  GSVEDLVRALAAECSEVRLTSGVADSLLRGCGDCWKPALGFFLWAQSRGGGYSHTPYACS 123

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
            MVD+LGK  + ++MW+ +  M   G++++ T A        A K+ +A++ FD +   G
Sbjct: 124 RMVDLLGKTRQIDRMWDLLSEMHCRGLVTVDTVAKSIRRLAAARKWRDAILLFDQLEDLG 183

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           +E++   +N LL A+C+ E +   A E    +   + PD  +F I + GW     ++EA 
Sbjct: 184 LERNTETMNVLLDALCK-EKKVELAREVFVMLSPHIAPDAYTFNIFVHGWCSVRRIDEAL 242

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
            T  EM  R    P  V+ Y   L    + +      + L  M  + C P +  ++  + 
Sbjct: 243 WTIEEMKTR--GFPPIVITYTAVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMT 300

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH-EMIKN 354
            L K      A+ + D  M   G  PD+L YN +   L +   + E  + F  EM +N
Sbjct: 301 SLTKCERFEEALSVSD-RMKSSGCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPRN 357



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 108/253 (42%), Gaps = 5/253 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+ V       R ++    +  MK  G   +  T+ ++ ++YC    +       D 
Sbjct: 223 YTFNIFVHGWCSVRRIDEALWTIEEMKTRGFPPIVITYTAVLEAYCKQRNFRRVYEVLDS 282

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   G   +V+    +++++ + E +   AL   +R+K     PD   +  L+    + G
Sbjct: 283 MGSQGCHPNVITYTMIMTSLTKCE-RFEEALSVSDRMKSSGCKPDTLFYNALINLLGRAG 341

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           ++ EAN+ F   + R      +V  Y T +  L +  + D+AL  L+ M+ ++C P L+ 
Sbjct: 342 HLFEANQVFRVEMPR-NGVLRNVATYNTMISILCQYGRDDDALGVLKEMEAQSCKPDLQT 400

Query: 292 FSNALDILVKLNDSTHAV-QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
           +   L +L+       AV +L   +   +G   D  TY ++   L K          + E
Sbjct: 401 YQPLLRLLLGRRGQAAAVHRLLSELRDRNGLGLDLDTYTLLIHGLCKVGETDWAYLLYDE 460

Query: 351 MIKNEWQPTPLNC 363
           M+ +E  P P  C
Sbjct: 461 MVGSEIVPRPRTC 473


>gi|297599556|ref|NP_001047351.2| Os02g0601600 [Oryza sativa Japonica Group]
 gi|255671066|dbj|BAF09265.2| Os02g0601600 [Oryza sativa Japonica Group]
          Length = 466

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 137/300 (45%), Gaps = 10/300 (3%)

Query: 74  CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQ 131
           C+GI  T ++V  +L    D   SA+ FF+WA      R + YA N MVD+LGK  + +Q
Sbjct: 41  CSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQ 100

Query: 132 MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           MW  +  M   G++++ T A       GA ++ + V+ FD +   G+E++   +N LL  
Sbjct: 101 MWELLSDMHGRGLVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLDV 160

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           +C+ E +   A E    +   + PD  +F I + GW     ++EA  T  EM  R    P
Sbjct: 161 LCK-ERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRR--GFP 217

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
             V+ Y T L    + +      + L  M  + C P +  ++  +  L K      A+ +
Sbjct: 218 PSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSV 277

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH-EMIKNEWQPTPLNCATAITML 370
               M   G  PD+L YN +   L K+  + E  + F  EM  N       N AT  TM+
Sbjct: 278 -SHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMN---GVSHNLATYNTMI 333



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 114/270 (42%), Gaps = 16/270 (5%)

Query: 130 EQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
           E MW  +  MK  G   S+ T+ ++ ++YC    +       D M   G   +V+    +
Sbjct: 203 EAMWT-IEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMI 261

Query: 189 LSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           ++++ + E +   AL   +R+K     PD   +  L+    K G++ EA++ F   VE  
Sbjct: 262 MTSLAKCE-RFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVF--RVEMP 318

Query: 248 EWNPEHVLA-YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
                H LA Y T +       + D+AL  L+ M+ ++C P ++ +   L + +      
Sbjct: 319 MNGVSHNLATYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQA 378

Query: 307 HAVQ-LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
             V+ L   +   H    D  TY ++   L +        + F EM+ +E  P    C  
Sbjct: 379 DTVRHLLSELTSKHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEMVSSEIAPRSKTCV- 437

Query: 366 AITMLLDADEP---EIAIE-IWNYILENGI 391
              MLLD  +    E  +E I NY+   GI
Sbjct: 438 ---MLLDEAQRTNMETYVERIGNYMSSFGI 464


>gi|47848296|dbj|BAD22160.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 454

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 137/300 (45%), Gaps = 10/300 (3%)

Query: 74  CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQ 131
           C+GI  T ++V  +L    D   SA+ FF+WA      R + YA N MVD+LGK  + +Q
Sbjct: 29  CSGIRLTGNIVDTLLFKFGDDWKSALGFFQWAQSRDDYRHTAYACNRMVDLLGKMRQIDQ 88

Query: 132 MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           MW  +  M   G++++ T A       GA ++ + V+ FD +   G+E++   +N LL  
Sbjct: 89  MWELLSDMHGRGLVTVETVAKSIRRLAGARRWKDVVLLFDKLEDMGLERNTETMNVLLDV 148

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           +C+ E +   A E    +   + PD  +F I + GW     ++EA  T  EM  R    P
Sbjct: 149 LCK-ERKIEVAREVFAVLSPHIPPDAYTFNIFVHGWCSIRRIDEAMWTIEEMKRR--GFP 205

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
             V+ Y T L    + +      + L  M  + C P +  ++  +  L K      A+ +
Sbjct: 206 PSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMIMTSLAKCERFEEALSV 265

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH-EMIKNEWQPTPLNCATAITML 370
               M   G  PD+L YN +   L K+  + E  + F  EM  N       N AT  TM+
Sbjct: 266 -SHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVFRVEMPMN---GVSHNLATYNTMI 321



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 114/270 (42%), Gaps = 16/270 (5%)

Query: 130 EQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
           E MW  +  MK  G   S+ T+ ++ ++YC    +       D M   G   +V+    +
Sbjct: 191 EAMWT-IEEMKRRGFPPSVITYTTVLEAYCKQRNFRRVYEVLDSMGSQGCHPNVITYTMI 249

Query: 189 LSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           ++++ + E +   AL   +R+K     PD   +  L+    K G++ EA++ F   VE  
Sbjct: 250 MTSLAKCE-RFEEALSVSHRMKSSGCKPDTLFYNSLINLLGKSGHLFEASQVF--RVEMP 306

Query: 248 EWNPEHVLA-YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
                H LA Y T +       + D+AL  L+ M+ ++C P ++ +   L + +      
Sbjct: 307 MNGVSHNLATYNTMISIFCYYGRDDDALNVLKEMEAQSCKPDIQSYRPLLRLFLSRRGQA 366

Query: 307 HAVQ-LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
             V+ L   +   H    D  TY ++   L +        + F EM+ +E  P    C  
Sbjct: 367 DTVRHLLSELTSKHNLGLDLDTYTLLIHGLCRVGDTVWAYQLFDEMVSSEIAPRSKTCV- 425

Query: 366 AITMLLDADEP---EIAIE-IWNYILENGI 391
              MLLD  +    E  +E I NY+   GI
Sbjct: 426 ---MLLDEAQRTNMETYVERIGNYMSSFGI 452


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 157/354 (44%), Gaps = 5/354 (1%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
           ++ Y  N+MV    K   F+     +  M++  V   + T   + D+   AG  D A+  
Sbjct: 155 VNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIAL 214

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
            D M+  G++  +V  NS+L  +C+          F    +  V PD  SF IL+ G+ +
Sbjct: 215 VDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCR 274

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G V+EA K + EM  R+   P+ V+++   +    R  ++D A  +LR MKG    P  
Sbjct: 275 VGEVKEAVKFYKEMQHRY-VTPD-VVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDG 332

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             ++  +    +    + A+++ D M+ F G  PD +TYN +   L K  R+ + EK  +
Sbjct: 333 VIYTMVIGGFCRAGSMSEALRVRDEMVGF-GCLPDVVTYNTLLNGLCKQHRLLDAEKLLN 391

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM +    P      T I         E A+++++ +L   + P   + N L+ G+   G
Sbjct: 392 EMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKG 451

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 463
            L+      ++M  R IL   +T   L  + + E   + D F  L+   K   +
Sbjct: 452 DLAKANELWDDMHAREILPNHITYSILIDS-HCEKGQVEDAFGFLDEMVKKGNL 504



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 135/283 (47%), Gaps = 12/283 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++ L K  R       +  M+E GV   L TF ++   YC  G ++ A+  FD + 
Sbjct: 370 YNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLL 429

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
              +  DVV  NSL+  +CR+    ++A E  + +  + + P+  +++IL++   ++G V
Sbjct: 430 RQRLRPDVVTYNSLIDGMCRK-GDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQV 488

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E+A     EMV++   N  ++  Y + +    R   V +  +FL+ M+ +N FP L  F+
Sbjct: 489 EDAFGFLDEMVKK--GNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFN 546

Query: 294 NALDILVKLNDSTHAVQLWDIM---MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
             +   +K  +   A  +++IM   MV     PD++TYNMI     +   + +  + F  
Sbjct: 547 TLIHGYIKEENMHGAFNVFNIMEKEMVR----PDAVTYNMIINGFSEQGNMQDAGRVFKG 602

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           M  +  +P      + I   + A   + A ++ + ++  G  P
Sbjct: 603 MGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAP 645



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 90/396 (22%), Positives = 176/396 (44%), Gaps = 17/396 (4%)

Query: 57  CEILAHASSDDIESALACTGIIPTPDLV-HEVL------QLSYDSPSSAVDFFRWAGRGQ 109
           C+ L    +D + S +    + P  D+V H VL          D+  + VD    A RG 
Sbjct: 168 CKTLEFDGADTVISEMEKRCVFP--DVVTHNVLIDARFRAGDVDAAIALVD--SMANRGL 223

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVM 168
           +     +N ++  L K+ RF++     R M +  V   + +F  +   +C  G+  EAV 
Sbjct: 224 KPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVK 283

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGW 227
            +  M    V  DVV+ + L+    R+  +   A  +L  +K + + PDG  + +++ G+
Sbjct: 284 FYKEMQHRYVTPDVVSFSCLIGLFSRR-GEMDHAGAYLREMKGLGLVPDGVIYTMVIGGF 342

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            + G++ EA +   EMV  F   P+ V+ Y T L  L +  ++ +A K L  M+     P
Sbjct: 343 CRAGSMSEALRVRDEMVG-FGCLPD-VVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTP 400

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
            L  F+  +    +  +  +A+QL+D ++      PD +TYN + + + +   + +  + 
Sbjct: 401 DLCTFTTLIHGYCRQGNFENALQLFDTLLR-QRLRPDVVTYNSLIDGMCRKGDLAKANEL 459

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           + +M   E  P  +  +  I    +  + E A    + +++ G LP   + N ++ G   
Sbjct: 460 WDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCR 519

Query: 408 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
            G +   ++F ++M    +    +T + L   +  E
Sbjct: 520 SGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKE 555



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 133/307 (43%), Gaps = 7/307 (2%)

Query: 122 VLGKNGRFEQMWNAVRVMKE-DGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           V+G   R   M  A+RV  E  G   LP   T+ ++ +  C   +  +A    + M   G
Sbjct: 338 VIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERG 397

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           V  D+    +L+   CRQ N  +    F   +++ + PD  ++  L++G  ++G++ +AN
Sbjct: 398 VTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKAN 457

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           + + +M  R E  P H+  Y   + +     QV++A  FL  M  +   P ++ +++ + 
Sbjct: 458 ELWDDMHAR-EILPNHI-TYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIK 515

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
              +  +     Q    M      FPD +T+N +    IK + +H     F+ M K   +
Sbjct: 516 GYCRSGNVKKGQQFLQKMRQ-DNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVR 574

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
           P  +     I    +    + A  ++  + ++GI P   +   L+ G    G      + 
Sbjct: 575 PDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQL 634

Query: 418 AEEMLNR 424
            +EM++R
Sbjct: 635 HDEMIHR 641


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 181/434 (41%), Gaps = 82/434 (18%)

Query: 101 FFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
           FF+WAG          ++N +++VL K+GR + ++     M   G + +  T+  +  S 
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSL 62

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN---------- 207
           C A +++EA   F  M+  G   +V + + L++ +CR + +   A E LN          
Sbjct: 63  CQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQ-KVDEAAELLNEMIDGGHQPN 121

Query: 208 ---------------RVKKIVD-----------PDGDSFAILLEGWEKEGNVEEANKTFG 241
                          ++K+ VD           PDG  + +L++G+ K+G++ EA + F 
Sbjct: 122 VVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFE 181

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM+E+       V  Y + L    R  +        + M  + C P +  F+N LD   K
Sbjct: 182 EMLEK--GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239

Query: 302 LNDSTHAVQLW----------DIM------------------------MVFHGAFPDSLT 327
           + D   A +L+          D++                        M+  G  PD ++
Sbjct: 240 MGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVS 299

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN++ +   K+  +    K F+E+ K+  +P   + +T I  L  A +   A  ++  ++
Sbjct: 300 YNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMI 359

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI----YEVTMHKLKKAFYNE 443
            NG  P  A    L++GL    RL++     + M+    +     Y + M+KL KA    
Sbjct: 360 ANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKA--KR 417

Query: 444 SRSMRDIFDSLERR 457
           S  + +IF  L  R
Sbjct: 418 SDDVCEIFHELTER 431



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 4/246 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N ++    + G F ++ +  + M   G + ++ TF ++ D +C  G   EA   F  
Sbjct: 193 FTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLE 252

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G   DVV+ N+L+  +C +             ++  V PD  S+ IL++G+ K G 
Sbjct: 253 MRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGA 312

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++ A K F E + +    P+   +Y T +  L R  +V  A    + M      P     
Sbjct: 313 LDHAIKLFYE-IPKSGLEPD-AFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVV 370

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
              +  L +    T + +L+  M+ F    P    YN++   L K KR  +V + FHE+ 
Sbjct: 371 IPLVIGLCRGERLTESCELFQAMVKFE-CVPLIPEYNLLMYKLCKAKRSDDVCEIFHELT 429

Query: 353 KNEWQP 358
           +  + P
Sbjct: 430 ERGFSP 435



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 119/298 (39%), Gaps = 5/298 (1%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           AVD F R   RG       +N+++D   K G   + +     M E G + ++ T+ S+  
Sbjct: 141 AVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLS 200

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
            +   G++      F  M   G   ++   N+LL   C+  +       FL        P
Sbjct: 201 GFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPP 260

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D  S+  L+ G   +G   EA +   EM+ R    P+ +++Y   +    +   +D A+K
Sbjct: 261 DVVSYNTLIRGMCSKGKPHEAQRLLREMI-RSGVGPD-IVSYNILIDGYSKSGALDHAIK 318

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
               +      P    +S  +D L +      A  ++  M+  +G+ PD+     +   L
Sbjct: 319 LFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIA-NGSAPDAAVVIPLVIGL 377

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            + +R+ E  + F  M+K E  P        +  L  A   +   EI++ + E G  P
Sbjct: 378 CRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSP 435


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 162/362 (44%), Gaps = 27/362 (7%)

Query: 81  PDLVHEVLQLSYDSPSSAVD-----FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           PD++   + +      S V            RG +     +N++V+ + K GR ++   A
Sbjct: 14  PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDE---A 70

Query: 136 VRVMKEDGVLSLPTFAS---------IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           ++ +      S+P++ S         I  S C  G++ +A      M   G    VV  N
Sbjct: 71  IKFLN-----SMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFN 125

Query: 187 SLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
            L++ +CR+     RA++ L ++      P+  S+  LL G+ KE  ++ A +    MV 
Sbjct: 126 ILINFLCRK-GLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVS 184

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
           R  + P+ ++ Y T L  L +  +VD A++ L  +  + C P L  ++  +D L K+  +
Sbjct: 185 RGCY-PD-IVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKT 242

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
             AV+L    M   G  PD +TY+ +   L +  +V E  KFFH++     +P      +
Sbjct: 243 DQAVELLH-EMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNS 301

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
            +  L  A + + AI+   Y++  G  P E S   L+ G+ N G   +      E+ +R 
Sbjct: 302 IMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRG 361

Query: 426 IL 427
           ++
Sbjct: 362 VV 363



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 127/301 (42%), Gaps = 13/301 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  + +  C  G+ DEA+   + M  +G + +V+  N +L ++C               
Sbjct: 53  TYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEM 112

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH-----VLAYETFLIT 263
           V+K   P   +F IL+    ++G         G  ++  E  P H      L+Y   L  
Sbjct: 113 VRKGCSPSVVTFNILINFLCRKG-------LLGRAIDILEKMPTHGCTPNSLSYNPLLHG 165

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
             + K++D A+++L +M    C+P +  ++  L  L K      AV+L +  +   G  P
Sbjct: 166 FCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLN-QLSSKGCSP 224

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
             +TYN + + L K  +  +  +  HEM     +P  +  ++ I  L    + E AI+ +
Sbjct: 225 VLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFF 284

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
           + +   G+ P   + N ++ GL    +      F   M+++     EV+   L +   NE
Sbjct: 285 HDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANE 344

Query: 444 S 444
            
Sbjct: 345 G 345



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 118/266 (44%), Gaps = 5/266 (1%)

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
           DV+    L+ A C  E+   +A++ L+ +  +   PD  ++ +L+ G  KEG ++EA K 
Sbjct: 15  DVITYTILIEATC-AESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKF 73

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
              M   +   P +V+ +   L ++    +  +A K L  M  + C P++  F+  ++ L
Sbjct: 74  LNSM-PSYGSQP-NVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFL 131

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            +      A+ + +  M  HG  P+SL+YN +     K K++    ++   M+     P 
Sbjct: 132 CRKGLLGRAIDILE-KMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPD 190

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
            +   T +T L    + + A+E+ N +   G  P+  + N ++ GL  +G+         
Sbjct: 191 IVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLH 250

Query: 420 EMLNRRILIYEVTMHKLKKAFYNESR 445
           EM  + +    +T   L      E +
Sbjct: 251 EMRGKGLKPDVITYSSLIAGLSREGK 276


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 161/325 (49%), Gaps = 8/325 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N++++ L + GR +++   +  M + G  L   T+ ++   YC  G + +A++    M
Sbjct: 277 SYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM 336

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
             HG+   V+   SL+ ++C+  N  +RA EFL++++ + + P+  ++  L++G+ ++G 
Sbjct: 337 LRHGLSPSVITYTSLIHSMCKAGNM-NRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGY 395

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLIT-LIRGKQVDEALKFLRVMKGENCFPTLKF 291
           + EA +   EM++   ++P  V+ Y   +    I GK VD A+  L  MK +   P +  
Sbjct: 396 MNEAYRVLKEMIDN-GFSPS-VVTYNALINGHCIAGKMVD-AIAVLEDMKEKGLTPDVVS 452

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S  L    +  D   A+++    MV  G  PD++TY+ + +   + +R  E    F EM
Sbjct: 453 YSTVLSGFCRSYDVDEALRVKR-KMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEM 511

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           ++    P        I       + + AI++ N ++E G+LP   + + L+ GL    R 
Sbjct: 512 LRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQART 571

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKL 436
            + +R   ++     +  +VT H L
Sbjct: 572 REAKRLLLKLFYEESVPSDVTYHTL 596



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 132/311 (42%), Gaps = 7/311 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  +   +C AG  D A+  FD M   G   +VV  N+L+   C+   +     E L  
Sbjct: 207 TYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLR-KIDDGFELLRS 265

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +  K ++P+  S+ +++ G  +EG ++E +    EM +R     E  + Y T +    + 
Sbjct: 266 MALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDE--VTYNTLIKGYCKE 323

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
               +AL     M      P++  +++ +  + K  +   A +  D M V  G  P+  T
Sbjct: 324 GNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRV-RGLCPNERT 382

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y  + +   +   ++E  +   EMI N + P+ +     I     A +   AI +   + 
Sbjct: 383 YTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMK 442

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
           E G+ P   S + +L G      + +  R   +M+ + I    +T   L + F  + R+ 
Sbjct: 443 EKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTK 502

Query: 448 R--DIFDSLER 456
              D+FD + R
Sbjct: 503 EACDLFDEMLR 513



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 149/366 (40%), Gaps = 26/366 (7%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ-----------------RLSPYAWNLMVDV 122
           TP+    +L  S ++    + F  WA   Q                 +L   A  L  DV
Sbjct: 47  TPEAASNLLLKSQNNQELILKFLTWANPHQFFTLRCKCITLHILTRFKLYKTAQTLAEDV 106

Query: 123 LGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFD----SYCGAGKYDEAVMSFDVMSMHGV 178
             K    E      R ++E   L   T +S+FD    SY      D+A+    +   HG 
Sbjct: 107 AAKTLDDEDASLVFRSLQETYDLCNST-SSVFDLVVKSYSRLCLIDKALSIVHLSQAHGF 165

Query: 179 EQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
              V++ N++L A  R +   S A   F   ++  V P+  ++ IL+ G+   GN++ A 
Sbjct: 166 MPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVAL 225

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           + F  M E+    P +V+ Y T +    + +++D+  + LR M  +   P L  ++  ++
Sbjct: 226 RFFDRM-EKKGCLP-NVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVIN 283

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
            L +       +      M   G   D +TYN + +   K    H+      EM+++   
Sbjct: 284 GLCR-EGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLS 342

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
           P+ +   + I  +  A     A E  + +   G+ P E +   L+ G    G +++  R 
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402

Query: 418 AEEMLN 423
            +EM++
Sbjct: 403 LKEMID 408



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 85/213 (39%), Gaps = 4/213 (1%)

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E+A+  F  + E ++        ++  + +  R   +D+AL  + + +     P +  ++
Sbjct: 114 EDASLVFRSLQETYDLCNSTSSVFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYN 173

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE--CLIKNKRVHEVEKFFHEM 351
             LD  ++   +    +     M+     P+  TYN++    CL  N  V    +FF  M
Sbjct: 174 AVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDV--ALRFFDRM 231

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
            K    P  +   T I       + +   E+   +   G+ P   S N ++ GL   GR+
Sbjct: 232 EKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRM 291

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            ++     EM  R   + EVT + L K +  E 
Sbjct: 292 KEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEG 324


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 167/394 (42%), Gaps = 43/394 (10%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           P +V  VLQ   D P +A+ FF WAG RG + S +  N  +  L +NG  +++      M
Sbjct: 93  PAVVSRVLQRLKD-PQTAIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERM 151

Query: 140 KEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ------------------ 180
            + G      T+  +  S C   + D+A    D   + G +                   
Sbjct: 152 LDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRL 211

Query: 181 -------------DVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEG 226
                        D +A N+++   CR+ N    ALEFL  + ++ V PD  ++ IL++G
Sbjct: 212 KDALEIFRNIPSPDAIAYNAIIHGHCRK-NDCDGALEFLKEMNERKVAPDVFTYNILIDG 270

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             K    ++A++   EMV+R    P+ V  + + +  L +  + + A   L VM   NC 
Sbjct: 271 LCKASKTDKASEMLHEMVDR-GVTPDTV-TFNSIMDGLCKAGKFERAHSLLAVMAERNCR 328

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P+   ++  +  L K  +   A  L D   V  G  PD +TY+++ + L K  R+ E  +
Sbjct: 329 PSCCTYNTLISGLCKQQNVDRAKDLVD-EFVSSGFVPDVVTYSILADGLCKRGRIDEAFE 387

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
              EM      P  +   T I  L  A + E A E+   ++ +G +P   +   ++ GL 
Sbjct: 388 LVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLC 447

Query: 407 NLGRLSDVRRFAEEMLNR----RILIYEVTMHKL 436
             GRL    +  E ML R     ++ Y   M  L
Sbjct: 448 KEGRLDKALKMVEGMLKRGCTPSVITYTALMEGL 481



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 135/331 (40%), Gaps = 7/331 (2%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKY 163
           +G+G   +   +N ++D L K  + E+ +  +  +   G V  + T+  I D  C  G+ 
Sbjct: 393 SGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRL 452

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           D+A+   + M   G    V+   +L+  +CR          F   V K    D  ++  L
Sbjct: 453 DKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSL 512

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G+ K    +EA K    +V+     P ++  Y   +    +  ++DE       M   
Sbjct: 513 VNGYCKSSRTKEAQK----VVDGIRGTP-YIDVYNALMDGYCKEGRLDEIPNVFEDMACR 567

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
            C P +K ++  +D L K      A    + M    G  PD ++YN+I + L K  +  E
Sbjct: 568 GCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHS-AGCVPDVVSYNIIIDGLFKASKPKE 626

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
             +   +MI+    P  +   T +      +  + A+ I   +++ G+ P   + N L+ 
Sbjct: 627 ARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLIS 686

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
           GL    RL D      EML    ++   T +
Sbjct: 687 GLSQTNRLGDAYELMHEMLRNGCVVSACTTY 717



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 142/359 (39%), Gaps = 44/359 (12%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   A RG   +   +N+++D L K+G+ ++ +  +  M   G +  + ++  I D    
Sbjct: 561 FEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFK 620

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           A K  EA    D M   G+  D V  N+L++  C++E          N +K  VDPD  +
Sbjct: 621 ASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVT 680

Query: 220 FAILLEGWE----------------KEGNVEEANKTFGEMVERF---------------- 247
           +  L+ G                  + G V  A  T+  +++R                 
Sbjct: 681 YNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHM 740

Query: 248 --EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK---FFSNALDILVKL 302
                  + + Y  F+  L +  ++DEA   L  M       TL+    ++  +  L K 
Sbjct: 741 TGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMD------TLRDEVSYTTVIIGLCKA 794

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                A +L   M+   G    S T+N++ +   K KR+ E       M++    P+ + 
Sbjct: 795 EQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVIT 854

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
               IT L   D+ + A E+++ +   GI+    S   L+ GL   GR  +  +  EEM
Sbjct: 855 YNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEM 913



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 8/144 (5%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           A +G  ++ + +NL++D   K  R ++    + +M + G   S+ T+  +    C   K 
Sbjct: 809 AVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKV 868

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           D+A   FD M++ G+    V+   L+  +C Q     R  E L  ++++   D +   I 
Sbjct: 869 DKAWELFDEMAVRGIVASSVSYTVLIYGLCGQ----GRGKEALQVLEEMASSDCE---ID 921

Query: 224 LEGWEKEGNVEEANKTFGEMVERF 247
              WE      +   TFG     F
Sbjct: 922 DLKWEDVAPHSQFQTTFGPCYSSF 945


>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
 gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
 gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
          Length = 632

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 166/384 (43%), Gaps = 21/384 (5%)

Query: 41  PTHLDAPYISSSARIICEILAHASSD-------DIESALACTGIIPTPDLVHEVLQLSYD 93
           P H D+ +     R+   I    ++         +E+AL       +  LV  VL     
Sbjct: 136 PAHADSSHPEHVGRVCAAIADVVAAGAGAGADASLEAALTALSPPLSETLVLAVLDRFKH 195

Query: 94  SPSSAVDFFRWA------GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL 147
           +   +  FFRWA        G   +   +  MV +LGK  +F+ M   ++ M ++G L +
Sbjct: 196 AHRPSHRFFRWAAAAAAASGGFAHTTITYCKMVHILGKARQFQSMVALIQEMGKEGALCM 255

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
             F     S+  AG+   AV  F++M  HG +  V + N LL A+  QE     A +  +
Sbjct: 256 DAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALA-QEGLGREANQVFD 314

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           R++    PD  S+  L+  W    N+ EA + + EM+E     P+ V+ + T +  L+RG
Sbjct: 315 RMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLEN-GLKPD-VVVHNTMIEGLLRG 372

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           ++  EA+K   +MK +   P +  ++  +    K      A++ ++ M    G  PD  T
Sbjct: 373 QRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDV-GCQPDVAT 431

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y  +       KR+  V     EM +    P        I +L + + P+ A  I+  ++
Sbjct: 432 YTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMI 491

Query: 388 ENGILPLEASANELL----VGLRN 407
           + G+ P   + N ++    +G RN
Sbjct: 492 KKGLEPTIHTYNMMMKSYFLGGRN 515


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 181/434 (41%), Gaps = 82/434 (18%)

Query: 101 FFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
           FF+WAG          ++N +++VL K+GR + ++     M   G + +  T+  +  S 
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSL 62

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN---------- 207
           C A +++EA   F  M+  G   +V + + L++ +CR + +   A E LN          
Sbjct: 63  CQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQ-KVDEAAELLNEMIDGGHQPN 121

Query: 208 ---------------RVKKIVD-----------PDGDSFAILLEGWEKEGNVEEANKTFG 241
                          ++K+ VD           PDG  + +L++G+ K+G++ EA + F 
Sbjct: 122 VVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFE 181

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM+E+       V  Y + L    R  +        + M  + C P +  F+N LD   K
Sbjct: 182 EMLEK--GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239

Query: 302 LNDSTHAVQLW----------DIM------------------------MVFHGAFPDSLT 327
           + D   A +L+          D++                        M+  G  PD ++
Sbjct: 240 MGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVS 299

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN++ +   K+  +    K F+E+ K+  +P   + +T I  L  A +   A  ++  ++
Sbjct: 300 YNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMI 359

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI----YEVTMHKLKKAFYNE 443
            NG  P  A    L++GL    RL++     + M+    +     Y + M+KL KA    
Sbjct: 360 ANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKA--KR 417

Query: 444 SRSMRDIFDSLERR 457
           S  + +IF  L  R
Sbjct: 418 SDDVCEIFHELTER 431



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 119/298 (39%), Gaps = 5/298 (1%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           AVD F R   RG       +N+++D   K G   + +     M E G + ++ T+ S+  
Sbjct: 141 AVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLS 200

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
            +   G++      F  M   G   ++   N+LL   C+  +       FL        P
Sbjct: 201 GFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPP 260

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D  S+  L+ G   +G   EA +   EM+ R    P+ +++Y   +    +   +D A+K
Sbjct: 261 DVVSYNTLMRGMCSKGKPHEAQRLLREMI-RSGVGPD-IVSYNILIDGYSKSGALDHAIK 318

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
               +      P    +S  +D L +      A  ++  M+  +G+ PD+     +   L
Sbjct: 319 LFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIA-NGSAPDAAVVIPLVIGL 377

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            + +R+ E  + F  M+K E  P        +  L  A   +   EI++ + E G  P
Sbjct: 378 CRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSP 435


>gi|226509960|ref|NP_001150456.1| LOC100284086 [Zea mays]
 gi|195639404|gb|ACG39170.1| ATP binding protein [Zea mays]
          Length = 634

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 99/441 (22%), Positives = 185/441 (41%), Gaps = 42/441 (9%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSP 113
           I +++A  +  ++E+AL+         +V  VL     +   +  FFRWA    G   + 
Sbjct: 169 IADVVASGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATVSGGFTHTT 228

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
             +  M+ +LGK  +FE M   ++ M + G LS+  F     S+  AG+   AV  F++M
Sbjct: 229 ITYCKMLHILGKTRQFESMVAMIQEMGKAGALSMDAFKVAIKSFAAAGEIKNAVGVFELM 288

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             +G +  V + N LL A+ + E     A +  +++     PD  S+  L+  W    N+
Sbjct: 289 RKNGFDDGVESFNCLLVALAK-EGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNARNL 347

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN--------- 284
            EA + + EM+E+   +P+ V+ + T +  L+RG++  EA+K   +MK +          
Sbjct: 348 VEAGRVWNEMLEK-GMDPD-VVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPPPNVWTYT 405

Query: 285 -----------------CFPTLKFFSNALDI------LVKLNDSTHAVQLWDIM--MVFH 319
                            CF  ++      D+      LV   ++    ++  ++  M   
Sbjct: 406 MLIRDHCKQGKMDMAMECFEEMQEAKCQPDVATYTCLLVGYGNAKQMDRVTAVLEEMTQK 465

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP-EI 378
           G  PD+ TYN + + L       +  + + +MIK   +PT       +      D    +
Sbjct: 466 GCPPDARTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFVGDSNYAM 525

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
              +W  + + GI P   S    +      GR  +  ++ EEM+N+ +   ++  +K   
Sbjct: 526 GCAVWEEMHQRGICPDVNSYTVFINRHIRHGRPEEAYKYIEEMINKGMKAPQIDYNKFAA 585

Query: 439 AFYNESRSMRDIFDSLERRCK 459
            F    +   DI   L ++ K
Sbjct: 586 DFSKAGKP--DILFELAQKVK 604


>gi|449466251|ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 102/445 (22%), Positives = 186/445 (41%), Gaps = 60/445 (13%)

Query: 59  ILAHASSDDIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAG--RGQRLSP 113
           I   +SS D++ +L  + +  + +L+  VL+    S+ +P  A++FF +    RG   + 
Sbjct: 49  ITTSSSSTDMKHSLESSRVFLSNELIDGVLKRVRFSHGNPLQALEFFNYTAKRRGFYHTS 108

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVR--VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           ++ + M+ +LG++ +F+++W+ +     K+  ++SL T   +           + V SF 
Sbjct: 109 FSVDTMLYILGRSRKFDKIWDVLLDVKFKDPSLISLRTVMVVLGRIAKVCSVRQTVESFR 168

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
                  E DV   N+LL  +C QE     A    + +K +  P+  +F ILL GW+   
Sbjct: 169 KFKKFVPEFDVTCFNALLRTLC-QEKSMMDARNVYHGLKSMFRPNLQTFNILLSGWKSS- 226

Query: 232 NVEEANKTFGEMVE---------------------------------RFEWNPEHVLAYE 258
             EEA   F EM+E                                 R E  P  V+ Y 
Sbjct: 227 --EEAEGFFDEMIEMGVKPDVVSYNCLVDVYCKNREMDKAFKVVGKMRDEDIPADVITYT 284

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
           + +  L    Q D+A   L+ MK   C+P +  ++  +           A  L D  MV 
Sbjct: 285 SIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNATIRNFCIAKRLHEAFDLLD-EMVN 343

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            G  P++ TYN+ F     +  +      +  M+     P   +C   + +    ++ E+
Sbjct: 344 KGLSPNATTYNLFFRIFFWSNDLQSAWNLYRRMMDTGCLPNTQSCLFLVRLFKKYEKEEM 403

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR------------RI 426
           A+E+WN +++ G       + EL   L +LG+L +      +M+++            ++
Sbjct: 404 ALELWNDMIQKGFGSYILVSEELFDLLCDLGKLIEAESCFLQMVDKGHKPSYTSFKRIKV 463

Query: 427 LIYEVTMHKLKKAFYNESRSMRDIF 451
           L+     H   +A  N S+ M DIF
Sbjct: 464 LMELANKH---EALQNLSKKMDDIF 485


>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
          Length = 586

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 166/384 (43%), Gaps = 21/384 (5%)

Query: 41  PTHLDAPYISSSARIICEILAHASSD-------DIESALACTGIIPTPDLVHEVLQLSYD 93
           P H D+ +     R+   I    ++         +E+AL       +  LV  VL     
Sbjct: 136 PAHADSSHPEHVGRVCAAIADVVAAGAGAGADASLEAALTALSPPLSETLVLAVLDRFKH 195

Query: 94  SPSSAVDFFRWA------GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL 147
           +   +  FFRWA        G   +   +  MV +LGK  +F+ M   ++ M ++G L +
Sbjct: 196 AHRPSHRFFRWAAAAAAASGGFAHTTITYCKMVHILGKARQFQSMVALIQEMGKEGALCM 255

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
             F     S+  AG+   AV  F++M  HG +  V + N LL A+  QE     A +  +
Sbjct: 256 DAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALA-QEGLGREANQVFD 314

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           R++    PD  S+  L+  W    N+ EA + + EM+E     P+ V+ + T +  L+RG
Sbjct: 315 RMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLEN-GLKPD-VVVHNTMIEGLLRG 372

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           ++  EA+K   +MK +   P +  ++  +    K      A++ ++ M    G  PD  T
Sbjct: 373 QRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDV-GCQPDVAT 431

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y  +       KR+  V     EM +    P        I +L + + P+ A  I+  ++
Sbjct: 432 YTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMI 491

Query: 388 ENGILPLEASANELL----VGLRN 407
           + G+ P   + N ++    +G RN
Sbjct: 492 KKGLEPTIHTYNMMMKSYFLGGRN 515


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 152/314 (48%), Gaps = 6/314 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++V+ + + GR +     ++ +   G   +  ++  +    C A ++++A      MS
Sbjct: 229 YNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMS 288

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G   +VV  N L+S +CR+      A+E L+++ K    P+  S+  +L  + K+  +
Sbjct: 289 QKGYPPNVVTFNMLISFLCRR-GLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKM 347

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A      MV R  +    +++Y T L  L RG +VD A++ L  +K + C P L  ++
Sbjct: 348 DRAMAFVELMVSRGCY--PDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYN 405

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D L K   +  A++L +  MV  G  PD +TY+ I   L +  R+ E  + F ++  
Sbjct: 406 TVIDGLTKAGKTKEALELLN-EMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQD 464

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
              +P  +     +  L    E   AI+++ Y++ NG +P E++   L+ GL   G + +
Sbjct: 465 MGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKE 524

Query: 414 VRRFAEEMLNRRIL 427
            R    E+ +R ++
Sbjct: 525 ARELLGELCSRGVV 538



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 141/321 (43%), Gaps = 19/321 (5%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++    CG G+   A++  D M   G   DVV    LL A C++     +A++ L+ 
Sbjct: 158 TYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGY-KQAMKLLDE 216

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH-----VLAYETFLI 262
           ++ K   PD  ++ +++ G  +EG V++A       +E  +  P H      ++Y   L 
Sbjct: 217 MRAKGCAPDIITYNVVVNGICQEGRVDDA-------IEFLKSLPSHGCEPNTVSYNIVLK 269

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
            L   ++ ++A K +  M  +   P +  F+  +  L +      A+++ D  +  +G  
Sbjct: 270 GLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLD-QIPKYGCT 328

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           P+SL+YN I     K K++     F   M+     P  ++  T +T L    E + A+E+
Sbjct: 329 PNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVEL 388

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
            + + + G  P+  S N ++ GL   G+  +      EM+ + +    +T   +      
Sbjct: 389 LHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCR 448

Query: 443 ESRSMRDIFDSLERRCKTSQM 463
           E R    I +++   CK   M
Sbjct: 449 EDR----IEEAIRAFCKVQDM 465



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 127/285 (44%), Gaps = 12/285 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVM----KEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169
           Y +N ++  L   GR     NA+ V+    +   V  + T+  + ++ C    Y +A+  
Sbjct: 157 YTYNTLIRGLCGRGR---TGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKL 213

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWE 228
            D M   G   D++  N +++ IC QE +   A+EFL  +     +P+  S+ I+L+G  
Sbjct: 214 LDEMRAKGCAPDIITYNVVVNGIC-QEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLC 272

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
                E+A K   EM ++    P +V+ +   +  L R   V+ A++ L  +    C P 
Sbjct: 273 TAERWEDAEKLMAEMSQK--GYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPN 330

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
              ++  L    K      A+   + +MV  G +PD ++YN +   L +   V    +  
Sbjct: 331 SLSYNPILHAFCKQKKMDRAMAFVE-LMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELL 389

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           H++      P  ++  T I  L  A + + A+E+ N ++  G+ P
Sbjct: 390 HQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQP 434



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 71/134 (52%), Gaps = 3/134 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N ++D L K G+ ++    +  M   G+   + T+++I    C   + +EA+ +F  +
Sbjct: 403 SYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKV 462

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGN 232
              G+  + V  N++L  +C++  +T  A++ F+  +     P+  ++ IL+EG   EG 
Sbjct: 463 QDMGIRPNTVLYNAILLGLCKRR-ETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGL 521

Query: 233 VEEANKTFGEMVER 246
           V+EA +  GE+  R
Sbjct: 522 VKEARELLGELCSR 535


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 154/319 (48%), Gaps = 6/319 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
           RG  L    +N ++D     GR++++   + ++++E+      TF  + D+ C  G+  E
Sbjct: 224 RGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILE 283

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A     +MS  G + D+V  N+L+   C +EN    A E  NR VK+ ++PD  ++ +L+
Sbjct: 284 AQGVLAMMSKRGEKPDIVTYNALMEGYCSREN-VHEARELFNRMVKRGLEPDVLNYNVLI 342

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G+ K   V+EA   F E+  +    P  + +Y + +  L    ++    K L  M G  
Sbjct: 343 DGYCKTKMVDEAMVLFKELCNK-NLVPT-IASYNSLIDGLCNSGRISHVKKLLDEMHGSA 400

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P +  ++  +D L K      A+ +  +MM+  G  P+ +TYN + +       V+  
Sbjct: 401 QPPDVVTYNILIDALCKEGRILEALGVL-VMMMKKGVKPNIVTYNAMMDGYCLRNNVNVA 459

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
           +  F+ M+K+  +P  LN    I      +  + AI ++  +    ++P  AS N L+ G
Sbjct: 460 KDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDG 519

Query: 405 LRNLGRLSDVRRFAEEMLN 423
           L NLGR+  V+   +EM +
Sbjct: 520 LCNLGRIPHVQELLDEMCD 538



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 133/298 (44%), Gaps = 9/298 (3%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G  Q      +N+++D L K GR  +    + +M + GV  ++ T+ ++ D YC     +
Sbjct: 398 GSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVN 457

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            A   F+ M   G+E D++  N L++  C+ E      + F     K + PD  S+  L+
Sbjct: 458 VAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLI 517

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G    G +    +   EM +  + +P+ V+ Y   L    + +  D+A+   R +  E 
Sbjct: 518 DGLCNLGRIPHVQELLDEMCDSGQ-SPD-VITYNILLDAFCKTQPFDKAISLFRQIV-EG 574

Query: 285 CFPTLKFFSN--ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
            +P   F++N   +D L K      A      +++ HG  P+  TY ++   L K+    
Sbjct: 575 IWP--DFYTNHAIVDNLCKGEKLKMAEDALKHLLM-HGCSPNVQTYTILINALCKDGSFG 631

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           E      +M  N+  P  +     I +LL  +E + A ++   ++  G++ +E S N+
Sbjct: 632 EAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGLVNIEKSLNQ 689



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 124/285 (43%), Gaps = 5/285 (1%)

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           ++K     +L TF +I + +C  G   +A+     +   G   D     +L++ +  +  
Sbjct: 116 ILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGL-SKNG 174

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           Q   AL  L  ++K  V P+   ++ L++G  K+G V +A     ++ ER        + 
Sbjct: 175 QIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGIL--LDAVT 232

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           Y + +       +  E  + L  M  EN  P    F+  +D L K      A Q    MM
Sbjct: 233 YNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEA-QGVLAMM 291

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
              G  PD +TYN + E     + VHE  + F+ M+K   +P  LN    I         
Sbjct: 292 SKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMV 351

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           + A+ ++  +    ++P  AS N L+ GL N GR+S V++  +EM
Sbjct: 352 DEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEM 396



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 50/248 (20%), Positives = 89/248 (35%), Gaps = 36/248 (14%)

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           NV++A   F  MV  F   P  V  ++  L  ++R      A+     ++ +   P++  
Sbjct: 35  NVDDAVTCFNRMVRVFPPPPTSV--FDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIAT 92

Query: 292 FSNALDILVKLNDSTHAVQLWDIM-----------------------MVF---------- 318
           F+  ++     + +  A  L   +                       M+F          
Sbjct: 93  FTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLL 152

Query: 319 -HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
             G   D  TY  +   L KN ++        EM K+  QP  +  +  I  L       
Sbjct: 153 AQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVS 212

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437
            A+ + + I E GIL    + N L+ G  ++GR  +V +   +M+   +   + T + L 
Sbjct: 213 DALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILI 272

Query: 438 KAFYNESR 445
            A   E R
Sbjct: 273 DALCKEGR 280


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 163/360 (45%), Gaps = 14/360 (3%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLP---TFASIFDSYCGA 160
           AG+G +   + +N +++ L K G +E+   A RV+ E  GV   P   TF  +    C  
Sbjct: 286 AGKGLKPGLFTYNALINGLCKEGSYER---AKRVLDEMLGVGLCPNAATFNPMLVESCRK 342

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
               EA   F+ M   GV  D+++ +S++    R   +  RAL +  ++K + + PD   
Sbjct: 343 EDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRN-GELGRALAYFEKMKGVGLVPDTVI 401

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + IL+ G+ +  +V  A K   EMVER       V+ Y T L  L RGK +D+A +  + 
Sbjct: 402 YTILINGYCRNDDVSGALKMRNEMVER--GCVMDVVTYNTLLNGLCRGKMLDDADELFKE 459

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M     FP     +  +    K  + T A+ L++ M       PD +TYN + +   K  
Sbjct: 460 MVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETM-TLRSLKPDVVTYNTLMDGFCKVG 518

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
            + + ++ +++MI  E  P+ ++ +  I           A  +W+ + E GI P   + N
Sbjct: 519 EMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCN 578

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIF--DSLERR 457
            ++ G    G LS    F   M++  +    +T + L  +F  E    R  F  +++E R
Sbjct: 579 TIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEER 638



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 135/313 (43%), Gaps = 4/313 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFDVM 173
           +++ +V V  +NG   +       MK  G++      +I  + YC       A+   + M
Sbjct: 366 SFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEM 425

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   DVV  N+LL+ +CR +        F   V++ V PD  +   L+ G+ K+GN+
Sbjct: 426 VERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNM 485

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A   F  M  R    P+ V+ Y T +    +  ++++A +    M     FP+   FS
Sbjct: 486 TKALSLFETMTLR-SLKPD-VVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFS 543

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             ++    L   + A +LWD M    G  P  +T N I +  ++   + +   F + MI 
Sbjct: 544 ILINGFCSLGLVSEAFRLWDEMKE-KGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMIS 602

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               P  +   T I   +  +  + A  + N + E G+LP   + N +L G    GR+ +
Sbjct: 603 EGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQE 662

Query: 414 VRRFAEEMLNRRI 426
                 +M+++ I
Sbjct: 663 AEMVLHKMIDKGI 675



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 6/289 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG  +    +N +++ L +    +      + M E GV     T  ++   YC  G   +
Sbjct: 428 RGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTK 487

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICR-QENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           A+  F+ M++  ++ DVV  N+L+   C+  E + ++ L + + + + + P   SF+IL+
Sbjct: 488 ALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWY-DMISREIFPSYISFSILI 546

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+   G V EA + + EM E+    P  V    T +   +R   + +A  FL  M  E 
Sbjct: 547 NGFCSLGLVSEAFRLWDEMKEK-GIKPTLVTC-NTIIKGYLRAGNLSKANDFLNTMISEG 604

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P    ++  ++  VK  +   A  L + M    G  P+ +TYN I     ++ R+ E 
Sbjct: 605 VPPDCITYNTLINSFVKEENFDRAFFLINNMEE-RGLLPNLVTYNAILGGFSRHGRMQEA 663

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           E   H+MI     P      + I   +  D  + A  + + +L+ G +P
Sbjct: 664 EMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVP 712



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 161/404 (39%), Gaps = 72/404 (17%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR-VMKEDGVLSLPTFASIFDSYCGAGKYDE 165
           RG  +S  A N ++  + K G  +  W      +K   ++++ T   + ++ C  GK D 
Sbjct: 183 RGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDN 242

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILL 224
             +    M   GV  D+V  N+L++A CR+    S A   ++    K + P   ++  L+
Sbjct: 243 VGVYLSEMEEKGVYADLVTYNTLVNAYCRR-GLVSEAFGLVDCMAGKGLKPGLFTYNALI 301

Query: 225 EGWEKEGNVEEANKTFGEMVE------------------RFE--WNPEHV---------- 254
            G  KEG+ E A +   EM+                   R E  W  E V          
Sbjct: 302 NGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVV 361

Query: 255 ---LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
              +++ + +    R  ++  AL +   MKG    P    ++  ++   + +D + A+++
Sbjct: 362 PDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKM 421

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI---- 367
            +  MV  G   D +TYN +   L + K + + ++ F EM++    P      T I    
Sbjct: 422 RN-EMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYC 480

Query: 368 -------------TMLLDADEPEI------------------AIEIWNYILENGILPLEA 396
                        TM L + +P++                  A E+W  ++   I P   
Sbjct: 481 KDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYI 540

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           S + L+ G  +LG +S+  R  +EM  + I    VT + + K +
Sbjct: 541 SFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGY 584


>gi|255568998|ref|XP_002525469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535282|gb|EEF36959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 581

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 198/480 (41%), Gaps = 76/480 (15%)

Query: 18  PSSSSTTTSPTSHNPHRPTRPRFPT---------------------------HLDAPYIS 50
           PSSS+ + + +S N   P  P+ P                            +L    + 
Sbjct: 35  PSSSNLSVAFSSSNLETPIAPKIPNSHEGCSSESDHSDVSDDDDDDDNIRQLNLKDEGLV 94

Query: 51  SSARIICEILAHASSDDIE--SALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR- 107
               II  IL   S + +E  + +   G+  + +LV EVL    +   +A  FF WAGR 
Sbjct: 95  QDVTIIMSILHQLSGNPVEMKNKIEHCGVKVSRELVLEVLSRIRNDWEAAFTFFLWAGRQ 154

Query: 108 -GQRLSPYAWNLMVDVLGKNGRFEQMW---NAVRVMKEDGVLSLP-TFASIFDSYCGAGK 162
            G   S   ++ M+ +LGK  +F+  W   + +R +K    L  P T   +   YC    
Sbjct: 155 LGYSHSVREYHAMISILGKMRKFDTAWALIDEMRGVKTGISLVTPQTLLIMIRKYCAVHD 214

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFA 221
              A+ +F        +  +    SLLSA+CR +N Q +  L F N  K +   +  SF 
Sbjct: 215 VGRAINTFYAHKRFKFDLGIDEFQSLLSALCRYKNVQDAEHLMFCN--KDVFPFNTKSFN 272

Query: 222 ILLEGW-EKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           I+L GW    G+  EA++ + EM + R  ++   V++Y + +    +   + +  K    
Sbjct: 273 IVLNGWCNVIGSPREADRIWREMCKRRIHYD---VVSYASIISCYSKAGNLYKVFKLYNQ 329

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           MK     P  K +++ +  L K    + A+ L   M    G  P+++TYN + + L + +
Sbjct: 330 MKEVGIEPDRKIYNSVIFALAKGRHVSEAINLMKTMEE-KGIAPNTVTYNSLIKPLCRAR 388

Query: 340 RVHEVEKFFHEMIKNEWQPT---------PLNCATAITMLLD-----ADEPEI------- 378
           ++ E    F EM+++   PT          L     +  LL+        P I       
Sbjct: 389 KIDEARGLFDEMLQHGHSPTIRTYHAFFRSLRTGEEVFALLENMRKLGCHPTIDTYIMLI 448

Query: 379 -----------AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
                        ++WN I ENG+ P  +S   L+ GL   G+L +  +F  +M  +++L
Sbjct: 449 RKFCRWRQFDDVFKLWNQISENGLGPDRSSYIVLIHGLFLNGKLEEAYKFYADMKEKQLL 508



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 109/247 (44%), Gaps = 14/247 (5%)

Query: 117 NLMVDVLGKNGRFEQMWNAV--RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           N   +V+G     +++W  +  R +  D V    ++ASI   Y  AG   +    ++ M 
Sbjct: 276 NGWCNVIGSPREADRIWREMCKRRIHYDVV----SYASIISCYSKAGNLYKVFKLYNQMK 331

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G+E D    NS++ A+ +  +  S A+  +  ++ K + P+  ++  L++   +   +
Sbjct: 332 EVGIEPDRKIYNSVIFALAKGRH-VSEAINLMKTMEEKGIAPNTVTYNSLIKPLCRARKI 390

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA   F EM++    +   +  Y  F  +L  G   +E    L  M+   C PT+  + 
Sbjct: 391 DEARGLFDEMLQ--HGHSPTIRTYHAFFRSLRTG---EEVFALLENMRKLGCHPTIDTYI 445

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +    +        +LW+  +  +G  PD  +Y ++   L  N ++ E  KF+ +M +
Sbjct: 446 MLIRKFCRWRQFDDVFKLWN-QISENGLGPDRSSYIVLIHGLFLNGKLEEAYKFYADMKE 504

Query: 354 NEWQPTP 360
            +  P P
Sbjct: 505 KQLLPDP 511


>gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial-like [Glycine max]
          Length = 543

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 165/392 (42%), Gaps = 41/392 (10%)

Query: 70  SALACTGII--PTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGK 125
           +ALA  G+   P+  LV +VL    +    A+ FF+WA    G R SP   NLMVD+LGK
Sbjct: 111 AALALDGLSFQPSSGLVSQVLNRFSNDWVPALGFFKWAKSQTGYRHSPELCNLMVDILGK 170

Query: 126 NGRFEQMWNAVRVMK--EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
              F+ M + V  M   E G ++L T A +      A K+++A+ +F  M   GV +D  
Sbjct: 171 CKSFDPMSDLVEEMAKLEQGYVTLETMAKVIRRLAKARKHEDAIEAFRRMDKFGVNKDTA 230

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           A+N L+ A+ + ++    A + +   K ++     SF +L+ GW +    + A K   +M
Sbjct: 231 ALNVLIDALVKGDS-VEHAHKVVLEFKGLIPLSSHSFNVLMHGWCRARKFDNARKAMEDM 289

Query: 244 VE---------------------------------RFEWNPEHVLAYETFLITLIRGKQV 270
            E                                 R    P + + Y T ++ L +  Q+
Sbjct: 290 KELGFEPDVFSYTSFIEAYCHERDFRKVDQVLEEMRENGCPPNAVTYTTVMLHLGKAGQL 349

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
            +AL+    MK + C      +S  + IL K      A  +++ M    G   D +TYN 
Sbjct: 350 SKALEVYEKMKCDGCVADTPVYSCMIFILGKAGRLKDACDVFEDMPK-QGVVRDVVTYNT 408

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +      + R     +   EM     +P        + M       ++   + +++ +N 
Sbjct: 409 MISTACAHSREETALRLLKEMEDGSCKPNVGTYHPLLKMCCKKKRMKVLKFLLDHMFKND 468

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
           I P  A+ + L+  L   G+++D   F EEM+
Sbjct: 469 ISPDLATYSLLVNALCKTGKVADAYSFLEEMV 500


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 159/353 (45%), Gaps = 8/353 (2%)

Query: 96  SSAVD-FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF 154
           S AVD F+  A +G   S    N ++  L K   FE+     RVM E     + +F ++ 
Sbjct: 191 SCAVDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGACPDVFSFTNVI 250

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIV 213
           ++ C  GK + A+  F  M   G+  +VV  N +++ +C Q  +   A E   ++  K V
Sbjct: 251 NALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLC-QNGRLDNAFELKEKMTVKGV 309

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            P+  ++  L+ G  K    ++ N    EM+    +NP +V+ +   +    +   ++ A
Sbjct: 310 QPNLKTYGALINGLIKLNFFDKVNHVLDEMIGS-GFNP-NVVVFNNLIDGYCKMGNIEGA 367

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ-LWDIMMVFHGAFPDSLTYNMIF 332
           LK   VM  +N  PT     + +    K +   HA   L +I+       PD+  Y+++ 
Sbjct: 368 LKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDN-CYSVV- 425

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
             L K  R H   +F   M+   ++P+ L     +  L    +   A E+W  +LE G  
Sbjct: 426 HWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSP 485

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             + ++N L+ GL   G+L +  R  +EML R + +  +T + L   F NE +
Sbjct: 486 ASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGK 538



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 135/339 (39%), Gaps = 8/339 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           +FR   +G   S    N ++  L   G+  +    V+ M E G+ +   T+ ++   +C 
Sbjct: 476 WFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCN 535

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
            GK +      + M+  G++ D+   N LL  +C    +   A++  +  K   +  +  
Sbjct: 536 EGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLC-NVGKLDDAIKLWDEFKASGLISNIH 594

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
           ++ I++EG+ K   +E+    F E++ ++ E N    + Y   +    +   V  AL+ L
Sbjct: 595 TYGIMMEGYCKANRIEDVENLFNELLSKKMELNS---IVYNIIIKAHCQNGNVAAALQLL 651

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             MK +   P    +S+ +  +  +     A  L D M    G  P+ + Y  +     K
Sbjct: 652 ENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRK-EGFVPNVVCYTALIGGYCK 710

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             ++   E  + EMI     P        I         E A  +   + E+GI+P   +
Sbjct: 711 LGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVT 770

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
            N L  G      + +  +  ++M    + + E+T   L
Sbjct: 771 YNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTL 809


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 150/323 (46%), Gaps = 6/323 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG       +N++V+ + K GR ++    +  M   G   ++ T   I  S C  G++ +
Sbjct: 268 RGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMD 327

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A      M   G    VV  N L++ +CR+     RA++ L ++ K    P+  S+  LL
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRK-GLLGRAIDILEKMPKHGCQPNSLSYNPLL 386

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ KE  ++ A +    MV R  + P+ ++ Y T L  L +  +V++A++ L  +  + 
Sbjct: 387 HGFCKEKKMDRAIEYLERMVSRGCY-PD-IVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C P L  ++  +D L K   +  A++L D M       PD++TY+ +   L +  +V E 
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRA-KDLKPDTITYSSLVGGLSREGKVDEA 503

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            KFFHE  +   +P  +   + +  L    + + AI+   Y++  G  P E S   L+ G
Sbjct: 504 IKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEG 563

Query: 405 LRNLGRLSDVRRFAEEMLNRRIL 427
           L   G   +      E+ N+ ++
Sbjct: 564 LAYEGMAKEALELLNELCNKGLM 586



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 154/355 (43%), Gaps = 42/355 (11%)

Query: 127 GRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G+  +    + V++  G +  + T+  +   YC AG+ + A+   D MS   V  DVV  
Sbjct: 151 GKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTY 207

Query: 186 NSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           N++L ++C    +  +A+E L+R +++   PD  ++ IL+E   ++  V +A K   EM 
Sbjct: 208 NTILRSLC-DSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMR 266

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL--------------- 289
           +R    P+ V+ Y   +  + +  ++DEA+KFL  M    C P +               
Sbjct: 267 DR-GCTPD-VVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324

Query: 290 -------------KFFSNAL---DILVK-LNDSTHAVQLWDIM--MVFHGAFPDSLTYNM 330
                        K FS ++   +IL+  L       +  DI+  M  HG  P+SL+YN 
Sbjct: 325 WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNP 384

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +     K K++    ++   M+     P  +   T +T L    + E A+EI N +   G
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             P+  + N ++ GL   G+     +  +EM  + +    +T   L      E +
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 135/308 (43%), Gaps = 6/308 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++  L  +G+ +Q    + R+++ D    + T+  + ++ C      +A+   D M
Sbjct: 206 TYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEM 265

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G   DVV  N L++ IC+ E +   A++FLN +      P+  +  I+L      G 
Sbjct: 266 RDRGCTPDVVTYNVLVNGICK-EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             +A K   +M+ R  ++P  V+ +   +  L R   +  A+  L  M    C P    +
Sbjct: 325 WMDAEKLLADML-RKGFSPS-VVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSY 382

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  L    K      A++  +  MV  G +PD +TYN +   L K+ +V +  +  +++ 
Sbjct: 383 NPLLHGFCKEKKMDRAIEYLE-RMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLS 441

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P  +   T I  L  A +   AI++ + +    + P   + + L+ GL   G++ 
Sbjct: 442 SKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVD 501

Query: 413 DVRRFAEE 420
           +  +F  E
Sbjct: 502 EAIKFFHE 509



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 129/295 (43%), Gaps = 6/295 (2%)

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            ++   +C  GK  +A    +V+   G   DV+  N ++S  C+   + + AL  L+R+ 
Sbjct: 141 TTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKA-GEINNALSVLDRMS 199

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
             V PD  ++  +L      G +++A +    M++R +  P+ V+ Y   +    R   V
Sbjct: 200 --VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR-DCYPD-VITYTILIEATCRDSGV 255

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
            +A+K L  M+   C P +  ++  ++ + K      A++  +  M   G  P+ +T+N+
Sbjct: 256 GQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLND-MPSSGCQPNVITHNI 314

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           I   +    R  + EK   +M++  + P+ +     I  L        AI+I   + ++G
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHG 374

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             P   S N LL G     ++     + E M++R      VT + +  A   + +
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGK 429


>gi|255582957|ref|XP_002532249.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528067|gb|EEF30143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 507

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 148/297 (49%), Gaps = 9/297 (3%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQR--LSPYAWNLMVDVLGK 125
           IE AL       T DL+ +VL+        A+ FF W  +G +  +   A+N ++D+LGK
Sbjct: 67  IELALTQCNPTVTEDLILKVLKRHRSDWKPALIFFNWVSKGGKVLMGSGAYNEILDILGK 126

Query: 126 NGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
             RF+++   + +M K +G+++  T+  + + Y  A K +EA+  F+     G+E D+V+
Sbjct: 127 MRRFDELSQVLDIMSKREGLVNEETYRVLVNRYAAAHKVEEAIEIFNTRRDIGLEIDLVS 186

Query: 185 VNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
             +LL  +CR ++ Q + +L  L    K    D  +  I+L GW   GNV EA + + ++
Sbjct: 187 FQNLLMFLCRYKHVQIAESL--LYSKGKDFGMDIKTMNIVLNGWCVLGNVHEAKRFWKDI 244

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           +   +  P+ +  Y TF+  L +  ++  ALK  R M  + C P +   +  +D L   N
Sbjct: 245 IGS-KCKPD-LFTYGTFIKALTKKGKLGTALKIYRAMWEKQCKPDVVICNCIIDALCFKN 302

Query: 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
               A++++   M   G  P+  TYN + +   + +R+ +V +   EM+  +    P
Sbjct: 303 RVPEALEVFR-EMSQQGCLPNGATYNSLIKHFSRIRRMEKVYELLDEMLDKKGSCMP 358



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 122/265 (46%), Gaps = 13/265 (4%)

Query: 166 AVMSFDVMSMHG-VEQDVVAVNSLLSAI--CRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           A++ F+ +S  G V     A N +L  +   R+ ++ S+ L+ +++ + +V+ +  ++ +
Sbjct: 97  ALIFFNWVSKGGKVLMGSGAYNEILDILGKMRRFDELSQVLDIMSKREGLVNEE--TYRV 154

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMK 281
           L+  +     VEEA + F     R +   E  +++++  L+ L R K V  A   L   K
Sbjct: 155 LVNRYAAAHKVEEAIEIFNT---RRDIGLEIDLVSFQNLLMFLCRYKHVQIAESLL-YSK 210

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLW-DIMMVFHGAFPDSLTYNMIFECLIKNKR 340
           G++    +K  +  L+    L +   A + W DI  +     PD  TY    + L K  +
Sbjct: 211 GKDFGMDIKTMNIVLNGWCVLGNVHEAKRFWKDI--IGSKCKPDLFTYGTFIKALTKKGK 268

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           +    K +  M + + +P  + C   I  L   +    A+E++  + + G LP  A+ N 
Sbjct: 269 LGTALKIYRAMWEKQCKPDVVICNCIIDALCFKNRVPEALEVFREMSQQGCLPNGATYNS 328

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRR 425
           L+     + R+  V    +EML+++
Sbjct: 329 LIKHFSRIRRMEKVYELLDEMLDKK 353


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 153/317 (48%), Gaps = 6/317 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
           RG  L    +N ++D     GR++++   + ++++E+      TF  + D+ C  G+  E
Sbjct: 224 RGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILE 283

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A     +MS  G + D+V  N+L+   C +EN    A E  NR VK+ ++PD  ++ +L+
Sbjct: 284 AQGVLAMMSKRGEKPDIVTYNALMEGYCSREN-VHEARELFNRMVKRGLEPDVLNYNVLI 342

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G+ K   V+EA   F E+  +    P  + +Y + +  L    ++    K L  M G  
Sbjct: 343 DGYCKTKMVDEAMVLFKELCNK-NLVPT-IASYNSLIDGLCNSGRISHVKKLLDEMHGSA 400

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P +  ++  +D L K      A+ +  +MM+  G  P+ +TYN + +       V+  
Sbjct: 401 QPPDVVTYNILIDALCKEGRILEALGVL-VMMMKKGVKPNIVTYNAMMDGYCLRNNVNVA 459

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
           +  F+ M+K+  +P  LN    I      +  + AI ++  +    ++P  AS N L+ G
Sbjct: 460 KDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDG 519

Query: 405 LRNLGRLSDVRRFAEEM 421
           L NLGR+  V+   +EM
Sbjct: 520 LCNLGRIPHVQELLDEM 536



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 121/277 (43%), Gaps = 5/277 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L TF +I + +C  G   +A+     +   G   D     +L++ + +   Q   AL  
Sbjct: 124 NLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKN-GQIKAALHL 182

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L  ++K  V P+   ++ L++G  K+G V +A     ++ ER        + Y + +   
Sbjct: 183 LQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGIL--LDAVTYNSLIDGC 240

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
               +  E  + L  M  EN  P    F+  +D L K      A Q    MM   G  PD
Sbjct: 241 CSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEA-QGVLAMMSKRGEKPD 299

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TYN + E     + VHE  + F+ M+K   +P  LN    I         + A+ ++ 
Sbjct: 300 IVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFK 359

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            +    ++P  AS N L+ GL N GR+S V++  +EM
Sbjct: 360 ELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEM 396



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 133/296 (44%), Gaps = 15/296 (5%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G  Q      +N+++D L K GR  +    + +M + GV  ++ T+ ++ D YC     +
Sbjct: 398 GSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVN 457

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            A   F+ M   G+E D++  N L++  C+ E      + F     K + PD  S+  L+
Sbjct: 458 VAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLI 517

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G    G +    +   EM +  + +P+ V+ Y   L    + +  D+A+   R +  E 
Sbjct: 518 DGLCNLGRIPHVQELLDEMCDSGQ-SPD-VITYNILLDAFCKTQPFDKAISLFRQIV-EG 574

Query: 285 CFPTLKFFSN--ALDILV---KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
            +P   F++N   +D L    KL  +  A++     ++ HG  P+  TY ++   L K+ 
Sbjct: 575 IWP--DFYTNHAIVDNLCKGEKLKMAEDALK----HLLMHGCSPNVQTYTILINALCKDG 628

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
              E      +M  N+  P  +     I +LL  +E + A ++   ++  G++ +E
Sbjct: 629 SFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGLVNIE 684



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 2/152 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167
           GQ      +N+++D   K   F++  +  R + E       T  +I D+ C   K   A 
Sbjct: 540 GQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKGEKLKMAE 599

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEG 226
            +   + MHG   +V     L++A+C+ +     A+  L++++     PD  +F I++  
Sbjct: 600 DALKHLLMHGCSPNVQTYTILINALCK-DGSFGEAMLLLSKMEDNDRPPDAITFEIIIGV 658

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
             +    ++A K   EM+ R   N E  L YE
Sbjct: 659 LLQRNETDKAEKLREEMIARGLVNIEKRLMYE 690



 Score = 41.6 bits (96), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 50/248 (20%), Positives = 89/248 (35%), Gaps = 36/248 (14%)

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           NV++A   F  MV  F   P  V  ++  L  ++R      A+     ++ +   P++  
Sbjct: 35  NVDDAVTCFNRMVRVFPPPPTSV--FDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIAT 92

Query: 292 FSNALDILVKLNDSTHAVQLWDIM-----------------------MVF---------- 318
           F+  ++     + +  A  L   +                       M+F          
Sbjct: 93  FTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLL 152

Query: 319 -HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
             G   D  TY  +   L KN ++        EM K+  QP  +  +  I  L       
Sbjct: 153 AQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVS 212

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437
            A+ + + I E GIL    + N L+ G  ++GR  +V +   +M+   +   + T + L 
Sbjct: 213 DALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILI 272

Query: 438 KAFYNESR 445
            A   E R
Sbjct: 273 DALCKEGR 280


>gi|242087579|ref|XP_002439622.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
 gi|241944907|gb|EES18052.1| hypothetical protein SORBIDRAFT_09g017100 [Sorghum bicolor]
          Length = 657

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/431 (23%), Positives = 177/431 (41%), Gaps = 44/431 (10%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYAWNLMVDVLG 124
           ++E+AL+         +V  VL     +   +  FFRWA    G   +   +  M+ +LG
Sbjct: 182 NLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATASGGFTHTTITYCKMLHILG 241

Query: 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
           K  +FE M   ++ M + G LS+  F     S+  AG+   AV  F++M  +G +  V +
Sbjct: 242 KTRQFEMMVAIIQEMGKVGALSMDAFKVAIKSFAAAGEIKNAVGVFELMKKNGFDDGVES 301

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
            N LL A+   E     A +  +++     PD  S+  L+  W    N+ EA + + EM+
Sbjct: 302 FNCLLVALA-NEGLGREARQVFDKMHGQYSPDLRSYTALMLAWCNARNLVEAGRVWNEML 360

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           E+    P+ V+ + T +  L+RG++  EALK   +MK +   P +  ++  +    K   
Sbjct: 361 EK-GMKPD-VVVHNTMIEGLLRGQRRPEALKMFELMKAKGPPPNVWTYTMLIRDHCKRGK 418

Query: 305 STHAVQLWDIM----------------------------------MVFHGAFPDSLTYNM 330
              A++ ++ M                                  M   G  PD+ TYN 
Sbjct: 419 MDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNA 478

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPT--PLNCATAITMLLDADEPEIAIEIWNYILE 388
           + + L   K   +  + + +MIK   +PT    N       L D +   +   +W  +  
Sbjct: 479 LIKLLTNRKMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGDRNY-AMGCAVWEEMHR 537

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 448
            GI P   S    + G    GR  +  ++ EEM+N+ +   ++  +K    F    +   
Sbjct: 538 RGICPDVNSYTVFINGHIRHGRPEEAYKYIEEMINKGMTAPQIDYNKFAADFSKAGKP-- 595

Query: 449 DIFDSLERRCK 459
           DI   L  + K
Sbjct: 596 DILYELALKVK 606


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 162/380 (42%), Gaps = 44/380 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   A RG  L    +  ++  L + G+  Q  +  + M   G +  + T +++ D    
Sbjct: 79  FKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK 138

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGD 218
           AG+   AV  F  M   G+  + V  ++L+  +C+       ALE L ++KK    PD  
Sbjct: 139 AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC-ALEMLAQMKKAFCTPDTI 197

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVER------FEWN--------------PEHVLAYE 258
           ++ +L++G  K G+VE A   F EM+E       + +N                H LA E
Sbjct: 198 TYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQE 257

Query: 259 TFLIT--------------LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           T +                L + K+++EA+  +  +    C PT+  ++  L+ L K+  
Sbjct: 258 TTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGR 317

Query: 305 STHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
              A+ L    +V +G  PD +TY  + + L K KR  E  K F EM         + C 
Sbjct: 318 LEEAIDLLR-KIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTV-CY 375

Query: 365 TA-ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
           TA I  LL   +   A  ++  +  +G +P   + + ++ GL   GR+    R  + M  
Sbjct: 376 TALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEA 435

Query: 424 RRI----LIYEVTMHKLKKA 439
           R +    ++Y   +H L KA
Sbjct: 436 RGLAPNEVVYSALIHGLCKA 455



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 142/337 (42%), Gaps = 13/337 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++ L K GR E+  + +R + ++G    + T+ S+ D      +  EA   F  M+
Sbjct: 24  YNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMA 83

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKE 230
           + G+  D V   +L+    R+  QT +  +  +  K +      PD  + + +++G  K 
Sbjct: 84  LRGLALDTVCYTALI----RELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKA 139

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G +  A + F  M  R    P  V+ Y   +  L + +++D AL+ L  MK   C P   
Sbjct: 140 GRIGAAVRIFKSMEAR-GLAPNEVV-YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI 197

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            ++  +D L K  D   A   +D M+   G  PD  TYN++     K            +
Sbjct: 198 TYNVLIDGLCKSGDVEAARAFFDEMLE-AGCKPDVYTYNILISGFCKAGNTDAASHSLAQ 256

Query: 351 MIKNEWQPTPLNCATAITMLLDADEP-EIAIEIWNYILENGILPLEASANELLVGLRNLG 409
                     ++  TAI   L  ++  E A+ +   I  NG  P  A+ N LL GL  +G
Sbjct: 257 ETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMG 316

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446
           RL +      ++++       VT   L      E RS
Sbjct: 317 RLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRS 353



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 46/325 (14%)

Query: 74  CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMW 133
           CT    T +++ + L  S D  ++   F      G +   Y +N+++    K G  +   
Sbjct: 192 CTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAAS 251

Query: 134 N--AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           +  A         + + T+ +I D      K +EAV   + ++ +G    +   N+LL+ 
Sbjct: 252 HSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNG 311

Query: 192 ICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           +C+      R  E ++ ++KIVD    PD  ++  L++G  KE    EA K F EM  R 
Sbjct: 312 LCKM----GRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALR- 366

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
                  + Y   +  L++  ++ +A    + M    C P +   S  +D L K      
Sbjct: 367 -GLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGA 425

Query: 308 AVQLWDIM-------------MVFHG-------------------AF--PDSLTYNMIFE 333
           AV+++  M              + HG                   AF  PD++TYN++ +
Sbjct: 426 AVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILID 485

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQP 358
            L K+  V     FF EM++   +P
Sbjct: 486 GLCKSGDVEAARAFFDEMLEAGCKP 510



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/413 (20%), Positives = 152/413 (36%), Gaps = 78/413 (18%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+ E+LQ      +S+V +      G        + M+D L K GR   +  AVR+ K  
Sbjct: 97  LIRELLQTGKIPQASSV-YKTMTSHGCVPDVVTLSTMIDGLSKAGR---IGAAVRIFKSM 152

Query: 143 GVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN- 197
               L      ++++    C A K D A+     M       D +  N L+  +C+  + 
Sbjct: 153 EARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDV 212

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE--------------- 242
           + +RA  F   ++    PD  ++ IL+ G+ K GN + A+ +  +               
Sbjct: 213 EAARAF-FDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYT 271

Query: 243 -----------------MVERFEWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
                            ++E+   N     +  Y   L  L +  +++EA+  LR +   
Sbjct: 272 AIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDN 331

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIM---------------------------- 315
            C P +  +++ +D L K   S  A +L+  M                            
Sbjct: 332 GCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQA 391

Query: 316 ------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
                 M  HG  PD +T + + + L K  R+    + F  M      P  +  +  I  
Sbjct: 392 SSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 451

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
           L  A + + A+E+   + +    P   + N L+ GL   G +   R F +EML
Sbjct: 452 LCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEML 504



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 5/210 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   A RG  L    +  ++  L + G+  Q  +  + M   G +  + T +++ D    
Sbjct: 360 FKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK 419

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGD 218
           AG+   AV  F  M   G+  + V  ++L+  +C+       ALE L ++KK    PD  
Sbjct: 420 AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC-ALEMLAQMKKAFCTPDTI 478

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ IL++G  K G+VE A   F EM+E     P+ V  Y   +    +    D A     
Sbjct: 479 TYNILIDGLCKSGDVEAARAFFDEMLEA-GCKPD-VYTYNILISGFCKAGNTDAACGVFD 536

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHA 308
            M    C   +  +   +  L K    T A
Sbjct: 537 DMSSSRCSANVVTYGALISGLCKRRQLTKA 566



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 7/176 (3%)

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +++EA+  +  +    C PT+  ++  L+ L K+     A+ L    +V +G  PD +TY
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLR-KIVDNGCTPDVVTY 59

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA-ITMLLDADEPEIAIEIWNYIL 387
             + + L K KR  E  K F EM         + C TA I  LL   +   A  ++  + 
Sbjct: 60  TSLIDGLGKEKRSFEAYKLFKEMALRGLALDTV-CYTALIRELLQTGKIPQASSVYKTMT 118

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKA 439
            +G +P   + + ++ GL   GR+    R  + M  R +    ++Y   +H L KA
Sbjct: 119 SHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKA 174



 Score = 45.1 bits (105), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++D L K+G  E        M E G    + T+  +   +C AG  D A   FD MS
Sbjct: 480 YNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMS 539

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
                 +VV   +L+S +C++   T  +L F
Sbjct: 540 SSRCSANVVTYGALISGLCKRRQLTKASLYF 570


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 144/305 (47%), Gaps = 6/305 (1%)

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K G+  +    + ++++ G +  + T+  +    C  G++ +A      M   G    VV
Sbjct: 131 KIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVV 190

Query: 184 AVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             N L++ +CR+     RA++ L ++ K    P+  S+  LL G+ KE  +E A +  G+
Sbjct: 191 TFNILINFLCRK-GLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGK 249

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M  R  + P+ ++ Y T L  L +  +VD A++ L  +  + C P L  ++  +D L K+
Sbjct: 250 MTSRGCY-PD-IVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKV 307

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
             +  A +L D M    G  PD +TY+ +   L +  +V E  KFFH++     +P  + 
Sbjct: 308 GKTDQAAKLLDEMRA-KGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAIT 366

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
               +  L  A + + AI+   Y+++ G  P EAS   L+ GL   G   +      E+ 
Sbjct: 367 YNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELC 426

Query: 423 NRRIL 427
            R ++
Sbjct: 427 LRGVV 431



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 3/207 (1%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD      L+ G+ K G   +A +   E++E     P+ V+ Y   +  +    +  +A 
Sbjct: 117 PDIIPCTSLIRGFCKIGKTRKATRIM-EIIEDSGAVPD-VITYNVLISGMCSTGRWMDAE 174

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           K L  M    C P++  F+  ++ L +      A+ + +  M  HG  P+SL+YN +   
Sbjct: 175 KLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLE-KMPKHGCTPNSLSYNPLLHG 233

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
             K K++    ++  +M      P  +   T +T L    + + A+E+ N +   G  P+
Sbjct: 234 FCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPV 293

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEM 421
             + N ++ GL  +G+     +  +EM
Sbjct: 294 LITYNTVIDGLSKVGKTDQAAKLLDEM 320



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 1/185 (0%)

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           L  L+R  +++E  +FL  M      P +   ++ +    K+  +  A ++ +I+    G
Sbjct: 91  LSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIE-DSG 149

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
           A PD +TYN++   +    R  + EK   +M++    P+ +     I  L        AI
Sbjct: 150 AVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAI 209

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           ++   + ++G  P   S N LL G     ++     +  +M +R      VT + L  A 
Sbjct: 210 DVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTAL 269

Query: 441 YNESR 445
             + +
Sbjct: 270 CKDGK 274


>gi|297853022|ref|XP_002894392.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340234|gb|EFH70651.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 525

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 169/380 (44%), Gaps = 13/380 (3%)

Query: 66  DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVL 123
           DD+E  LA      + +LV +VL+   +    A  FF WA R      S  +++++V++L
Sbjct: 53  DDLEHTLAAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWAKRIPDFEHSLESYHILVEIL 112

Query: 124 GKNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           G + +F  +W+ +   +E     + +  F  +F +Y  A    EA  +F+ M   G++  
Sbjct: 113 GCSKQFALLWDFLIEAREYNYFEITSKVFWIVFRAYSRANLPSEASRAFNRMVEFGIKPC 172

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTF 240
           V  ++ LL ++C +++  + A EF ++ K   + P   +++IL+ GW +  +   A K F
Sbjct: 173 VDDLDQLLHSLCDRKH-VNHAQEFFDKAKGFGIVPSAKTYSILVRGWARIRDASGARKVF 231

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            EM+E        +LAY   L  L +   VD A K  + M      P    F+  +    
Sbjct: 232 DEMLENN--CVVDLLAYNALLDALCKSGDVDGAYKMFQEMGNLGLKPDAYSFAIFIHSYC 289

Query: 301 KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
             +D   A Q+ D M  +    P+  T+N I + L KN++V +      EMI+    P  
Sbjct: 290 DASDVHSAYQVLDRMKRY-DLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDT 348

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 420
               + +    D  E   A ++ + +     LP   + N +L  L  +GR   V    E 
Sbjct: 349 WTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRVTEIWEG 408

Query: 421 MLNRR----ILIYEVTMHKL 436
           M  R+    +  Y V +H L
Sbjct: 409 MSERKFYPTVATYTVMIHGL 428



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 103/261 (39%), Gaps = 50/261 (19%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSF 170
           A+N ++D L K+G  +    A ++ +E G L L     +FA    SYC A     A    
Sbjct: 245 AYNALLDALCKSGDVD---GAYKMFQEMGNLGLKPDAYSFAIFIHSYCDASDVHSAYQVL 301

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           D M  + +  +V   N ++  +C+ E                VD   D++ +L E  +K 
Sbjct: 302 DRMKRYDLVPNVYTFNHIIKTLCKNEK---------------VD---DAYLLLDEMIQKG 343

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            N +              W    ++AY           +V+ A K L  M    C P   
Sbjct: 344 ANPD-------------TWTYNSIMAYHC------DHCEVNRATKLLSRMDRTKCLPDRH 384

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK-RVHEVEKFFH 349
            ++  L +L+++       ++W+ M      +P   TY ++   L++ K ++ E  ++F 
Sbjct: 385 TYNMVLKLLIRIGRFDRVTEIWEGMSE-RKFYPTVATYTVMIHGLVRKKGKLEEACRYFE 443

Query: 350 EMIKNEWQPTPLNCATAITML 370
            MI     P     +T + ML
Sbjct: 444 MMIDEGIPPY----STTVEML 460


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 9/348 (2%)

Query: 97  SAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           SA + +R   R  R+SP  Y +N+++      G  ++       M+ +G L ++ T+ ++
Sbjct: 197 SAEEVYREMIR-SRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTL 255

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KI 212
            D+YC  G+ DEA      MS  G++ ++++ N +++ +CR E     A E L  +  K 
Sbjct: 256 IDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCR-EGSMKEAWEILEEMGYKG 314

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PD  ++  LL G+ KEGN  +A     EMV R   +P  V+ Y   + ++ + + ++ 
Sbjct: 315 FTPDEVTYNTLLNGYCKEGNFHQALVIHAEMV-RNGVSPS-VVTYTALINSMCKARNLNR 372

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A++F   M+     P  + ++  +D   +      A ++ +  M   G  P  +TYN   
Sbjct: 373 AMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILN-EMTESGFSPSVVTYNAFI 431

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
                 +R+ E      EM++    P  ++ +T I+      E + A ++   ++E G+ 
Sbjct: 432 HGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVS 491

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           P   + + L+ GL  + RL++    ++EML+  +   E T   L  A+
Sbjct: 492 PDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAY 539



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 126/279 (45%), Gaps = 13/279 (4%)

Query: 151 ASIFD----SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           +++FD    SY      D+AV + ++    G    V++ NS+L AI R       + E +
Sbjct: 142 SAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEV 201

Query: 207 NR--VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
            R  ++  V P+  ++ IL+ G+   G +++    FGEM ER    P +V+ Y T +   
Sbjct: 202 YREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEM-ERNGCLP-NVVTYNTLIDAY 259

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--MVFHGAF 322
            +  ++DEA   L+ M  +   P L  ++  ++ L +      A   W+I+  M + G  
Sbjct: 260 CKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEA---WEILEEMGYKGFT 316

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           PD +TYN +     K    H+      EM++N   P+ +     I  +  A     A+E 
Sbjct: 317 PDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEF 376

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           ++ +   G+ P E +   L+ G    G L++  R   EM
Sbjct: 377 FDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEM 415



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 145/335 (43%), Gaps = 28/335 (8%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++ D +   G  +EA    + M+  G    VV  N+ +   C  E    R  E L  
Sbjct: 391 TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLE----RMEEALGV 446

Query: 209 VKKIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           V+++V+    PD  S++ ++ G+ ++G ++ A +   EMVE+   +P+ V  Y + +  L
Sbjct: 447 VQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEK-GVSPDAV-TYSSLIQGL 504

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
              +++ EA    + M      P    ++  ++      D   A+ L D  M+  G  PD
Sbjct: 505 CEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHD-EMIHKGFLPD 563

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI------ 378
           ++TY+++   L K  R  E ++   ++I  E  P+ +   T I    + +   +      
Sbjct: 564 AVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKG 623

Query: 379 ---------AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
                    A  ++  ++E    P EA  N ++ G    G L       +EM++   + +
Sbjct: 624 FCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPH 683

Query: 430 EVTMHKLKKAFYNE--SRSMRDIFDSLERRCKTSQ 462
            VT+  L KA + E  +  M ++     R C+ ++
Sbjct: 684 TVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNE 718


>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
          Length = 637

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 177/419 (42%), Gaps = 42/419 (10%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSP 113
           I +++A  +  ++E+AL+         +V  VL     +   +  FFRWA    G   + 
Sbjct: 167 IADVIAAGADANLEAALSALSPPLCEAVVLAVLHRFKHAHRPSYRFFRWATASGGFTHTT 226

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
             +  M+ +LGK  +FE M   ++ M + G LS+  F     S+  AG+   AV  F++M
Sbjct: 227 ITYCKMLLILGKTRQFESMVALLQEMGKAGTLSMDAFKVAIKSFAAAGEIKNAVGVFELM 286

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             +G +  V + N LL A+   E     A +  +++     PD  S+  L+  W    N+
Sbjct: 287 RKNGFDDGVESFNCLLVALA-NEGLGREARQVFDKMLGQYSPDLRSYTALMLAWCNARNL 345

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN--------- 284
            EA + + EM+E+    P+ V+ + T +  L+RG++  EA+K   +MK +          
Sbjct: 346 VEAGRVWNEMLEK-GMKPD-VVVHNTMIEGLLRGQRQHEAVKMFELMKAKGPPPNVWTYT 403

Query: 285 -----------------CFPTLKFFSNALDI------LVKLNDSTHAVQLWDIM--MVFH 319
                            CF  ++      D+      LV   ++    ++  ++  M   
Sbjct: 404 MLICNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQK 463

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT--PLNCATAITMLLDADEPE 377
           G  PD+ TYN + + L   K   +  + + +MIK    PT    N       L D +   
Sbjct: 464 GCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMMMKSYFLGDRNY-A 522

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           +   +W  +   GI P   S    + G    GR  +  ++ EEM+N+ +   ++  +K 
Sbjct: 523 MGCAVWEEMHRRGICPDVNSYTVFISGHIRHGRPEEAYKYIEEMINKGMKAPQIDCNKF 581


>gi|449511317|ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 172/406 (42%), Gaps = 45/406 (11%)

Query: 59  ILAHASSDDIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAG--RGQRLSP 113
           I   +SS D++ +L  + +  + +L+  VL+    S+ +P  A++FF +    RG   + 
Sbjct: 49  ITTSSSSTDMKHSLESSRVFLSNELIDGVLKRVRFSHGNPLQALEFFNYTAKRRGFYHTS 108

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVR--VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           ++ + M+ +LG++ +F+++W+ +     K+  ++SL T   +           + V SF 
Sbjct: 109 FSVDTMLYILGRSRKFDKIWDVLLDVKFKDPSLISLRTVMVVLGRIAKVCSVRQTVESFR 168

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
                  E DV   N+LL  +C QE     A    + +K +  P+  +F ILL GW+   
Sbjct: 169 KFKKFVPEFDVTCFNALLRTLC-QEKSMMDARNVYHGLKSMFRPNLQTFNILLSGWKSS- 226

Query: 232 NVEEANKTFGEMVE---------------------------------RFEWNPEHVLAYE 258
             EEA   F EM+E                                 R E  P  V+ Y 
Sbjct: 227 --EEAEGFFDEMIEMGVKPDVVSYNCLVDVYCKNREMDKAFKVVGKMRDEDIPADVITYT 284

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
           + +  L    Q D+A   L+ MK   C+P +  ++  +           A  L D  MV 
Sbjct: 285 SIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNATIRNFCIAKRLHEAFDLLD-EMVN 343

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            G  P++ TYN+ F     +  +      +  M+     P   +C   + +    ++ E+
Sbjct: 344 KGLSPNATTYNLFFRIFFWSNDLQSAWNLYRRMMDTGCLPNTQSCLFLVRLFKKYEKEEM 403

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           A+E+WN +++ G       + EL   L +LG+L +      +M+++
Sbjct: 404 ALELWNDMIQKGFGSYILVSEELFDLLCDLGKLIEAESCFLQMVDK 449


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 161/387 (41%), Gaps = 47/387 (12%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F     RG       +N ++D L K G  E+       M   G + ++ T++ + +  C 
Sbjct: 104 FEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCK 163

Query: 160 AGKYDEAVMSFDVMSMHGVE--QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI---VD 214
            G+ DEA      M+    +   +++  NS L  +C+Q + T+ A E +  ++     V 
Sbjct: 164 VGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQ-SMTAEACELMRSLRDGSLRVS 222

Query: 215 PDGDSFAILLEGWEKEGNVEEANK-------------TFGEMV---------ERFEWNPE 252
           PD  +F+ L++G  K G  +EA               T+  +V         ER     E
Sbjct: 223 PDTVTFSTLIDGLCKCGQTDEACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIE 282

Query: 253 H---------VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
                     V+ Y   +    +  +VDEAL+ L  M    C P +  F++ +D L K +
Sbjct: 283 SMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSD 342

Query: 304 DSTHA----VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            S  A    +Q+++ M+V     PD +T+N++     K     +    F EM+    QP 
Sbjct: 343 RSGEAFQIALQVYNRMLV-----PDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPD 397

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
            +     I  L  A + E A +I + +   G+ P   + N L+ GL   GR+ +   F E
Sbjct: 398 VMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLE 457

Query: 420 EMLNRRILIYEVTMHKLKKAFYNESRS 446
           EM++   +   +T   L  A    SR+
Sbjct: 458 EMVSSGCVPESMTYGSLVYALCRASRT 484



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 140/324 (43%), Gaps = 41/324 (12%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +V+ L K  + E+    +  M + GV   + T++ + D++C A + DEA+     M+
Sbjct: 261 YNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMA 320

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSR---ALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
             G   +VV  NS++  +C+ +        AL+  NR   ++ PD  +F IL+ G  K G
Sbjct: 321 SRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNR---MLVPDKVTFNILIAGACKAG 377

Query: 232 NVEEANKTFGEMVER------------------------------FEWN---PEHVLAYE 258
           N E+A+  F EMV +                                 N   P +V+ Y 
Sbjct: 378 NFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYN 437

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
             +  L +  +++E  +FL  M    C P    + + +  L + + +  A+QL   +  F
Sbjct: 438 VLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSF 497

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            G  PD++TYN++ + L K+ +  +      EM+    QP     A     L  +     
Sbjct: 498 -GWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAG 556

Query: 379 AIEIWNYILENGILPLEASANELL 402
            +E+   +L  G+LP   + + +L
Sbjct: 557 TMELLRVVLAKGMLPDATTCSSIL 580



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 137/329 (41%), Gaps = 41/329 (12%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           S+  +  +  S C AG+   A+  F   M+  GV   +V  N++++ +C+  N+    +E
Sbjct: 44  SVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKS-NELGAGME 102

Query: 205 -FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            F   VK+   PD  ++  L++   K G++EEA +  G M  R      +V+ Y   +  
Sbjct: 103 LFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSR--GCVPNVVTYSVLING 160

Query: 264 LIRGKQVDEALKFLRVMKGENC--FPTLKFFSNALDILVKLNDSTHAVQLWDIM------ 315
           L +  ++DEA + ++ M  ++C   P +  +++ LD L K + +  A +L   +      
Sbjct: 161 LCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLR 220

Query: 316 ----------------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
                                       M+  G  P+ +TYN +   L K  ++      
Sbjct: 221 VSPDTVTFSTLIDGLCKCGQTDEACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAM 280

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
              M+     P  +  +  +     A   + A+E+ + +   G  P   + N ++ GL  
Sbjct: 281 IESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 340

Query: 408 LGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
             R  +  + A ++ NR ++  +VT + L
Sbjct: 341 SDRSGEAFQIALQVYNRMLVPDKVTFNIL 369



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 19/216 (8%)

Query: 250 NPEHVLAYETFLITL----IRGKQVDEA-LKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           NP H  A    L+ +    I  ++V+   LKF  V        ++  ++  L  L +  +
Sbjct: 4   NPHHHTAAANLLVPITTATINTQRVNLCPLKFFFVRSSSR---SVADYNIVLQSLCRAGE 60

Query: 305 STHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
           +  A++++   M   G  P  +TYN I   L K+  +    + F E++K    P  +   
Sbjct: 61  TARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYN 120

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           T I  L  A + E A  +   +   G +P   + + L+ GL  +GR+ + R   +EM  +
Sbjct: 121 TLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRK 180

Query: 425 ------RILIYEVTMHKL-KKAFYNES----RSMRD 449
                  I+ Y   +  L K++   E+    RS+RD
Sbjct: 181 SCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRD 216


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 168/372 (45%), Gaps = 31/372 (8%)

Query: 81  PDLVHEVLQLSYDSPSSAVD-----FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           PD+V   + +      S V      F     +G +     +N+++    K GR ++   A
Sbjct: 214 PDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDE---A 270

Query: 136 VRVMKEDGVLSLPTFAS---------IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           +R +K+     LP++           I  S C  G++ +A+     M   G    VV  N
Sbjct: 271 IRFLKK-----LPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFN 325

Query: 187 SLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
            L++ +C Q+    +AL  L  + K    P+  SF  L++G+     ++ A +    MV 
Sbjct: 326 ILINFLC-QKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVS 384

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
           R  + P+ ++ Y   L  L +  +VD+A+  L  +  + C P+L  ++  +D L+K+  +
Sbjct: 385 RGCY-PD-IVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKA 442

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
             AV+L +  M + G  PD +T   +   L +  +V E  KFFH + +   +P      +
Sbjct: 443 ELAVELLE-EMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNS 501

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR- 424
            IT L  + +  +AI+    ++  G  P EA+   L+ G+   G   D  + + E+ +R 
Sbjct: 502 IITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRG 561

Query: 425 ---RILIYEVTM 433
              R L+ +V++
Sbjct: 562 LVKRSLVEKVSL 573



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 155/346 (44%), Gaps = 42/346 (12%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  +   ++N+++    K+G  E+   A+RV+   GV  +  T+ ++  S C  GK  +A
Sbjct: 144 GAVIDVTSYNVLISGYCKSGEIEE---ALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQA 200

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
           +             DVV    L+ A C+ E+   +A++  N ++ K   PD  ++ +L++
Sbjct: 201 MQVLGRQLQSKCYPDVVTCTVLIDATCK-ESGVGQAMKLFNEMRNKGCKPDVVTYNVLIK 259

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ K G ++EA + F + +  +   P+ V+++   L +L  G +  +A+K L  M  + C
Sbjct: 260 GFCKGGRLDEAIR-FLKKLPSYGCQPD-VISHNMILRSLCSGGRWMDAMKLLATMLRKGC 317

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIM------------------------------ 315
            P++  F+  ++ L +      A+ + ++M                              
Sbjct: 318 LPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIE 377

Query: 316 ----MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
               MV  G +PD +TYN++   L K+ +V +      ++      P+ ++  T I  LL
Sbjct: 378 YLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLL 437

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
              + E+A+E+   +   G+ P   +   ++ GL   G++ +  +F
Sbjct: 438 KVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKF 483



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/319 (19%), Positives = 127/319 (39%), Gaps = 11/319 (3%)

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           +NG  E+    +  M   G    +    ++   +C  G+   A     ++   G   DV 
Sbjct: 91  RNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVT 150

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           + N L+S  C+   +   AL  L+R+   V P+  ++  +L      G +++A +  G  
Sbjct: 151 SYNVLISGYCKS-GEIEEALRVLDRMG--VSPNAATYDAVLCSLCDRGKLKQAMQVLGRQ 207

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           ++  +  P+ V+     +    +   V +A+K    M+ + C P +  ++  +    K  
Sbjct: 208 LQS-KCYPD-VVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGG 265

Query: 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
               A++    +  + G  PD +++NMI   L    R  +  K    M++    P+ +  
Sbjct: 266 RLDEAIRFLKKLPSY-GCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTF 324

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
              I  L        A+ +   + ++G  P   S N L+ G  N   +     + E M++
Sbjct: 325 NILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVS 384

Query: 424 RR----ILIYEVTMHKLKK 438
           R     I+ Y + +  L K
Sbjct: 385 RGCYPDIVTYNILLTALCK 403


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 158/353 (44%), Gaps = 8/353 (2%)

Query: 96  SSAVD-FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF 154
           S AVD F+  A +G   S    N  +  L K   FE+     RVM E     + +F ++ 
Sbjct: 168 SCAVDVFYLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMSEGACPDVFSFTNVI 227

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIV 213
           ++ C  GK + A+  F  M   G+  +VV  N +++ +C Q  +   A E   ++  K V
Sbjct: 228 NALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLC-QNGRLDNAFELKEKMTVKGV 286

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            P+  ++  L+ G  K    ++ N    EM+    +NP +V+ +   +    +   ++ A
Sbjct: 287 QPNLKTYGALINGLIKLNFFDKVNHILDEMIGA-GFNP-NVVVFNNLIDGYCKMGNIEGA 344

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ-LWDIMMVFHGAFPDSLTYNMIF 332
           LK   VM  +N  PT     + +    K +   HA   L +I+       PD+  Y+++ 
Sbjct: 345 LKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDN-CYSVV- 402

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
             L K  R H   +F   M+   ++P+ L     +  L    +   A E+W  +LE G  
Sbjct: 403 HWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSP 462

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             + ++N L+ GL   G+L +  R  +EML R + +  +T + L   F NE +
Sbjct: 463 ASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGK 515



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 135/339 (39%), Gaps = 8/339 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           +FR   +G   S    N ++  L   G+  +    V+ M E G+ +   T+ ++   +C 
Sbjct: 453 WFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCN 512

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
            GK +      + M+  G++ D+   N LL  +C    +   A++  +  K   +  +  
Sbjct: 513 EGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNV-GKLDDAIKLWDEFKASGLISNIH 571

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
           ++ I++EG+ K   +E+    F E++ ++ E N    + Y   +    +   V  AL+ L
Sbjct: 572 TYGIMMEGYCKANRIEDVENLFNELLSKKMELNS---IVYNIIIKAHCQNGNVAAALQLL 628

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             MK +   P    +S+ +  +  +     A  L D M    G  P+ + Y  +     K
Sbjct: 629 ENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRK-EGFVPNVVCYTALIGGYCK 687

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             ++   E  + EMI     P        I         E A  +   + E+GI+P   +
Sbjct: 688 LGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVT 747

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
            N L  G      + +  +  ++M    + + E+T   L
Sbjct: 748 YNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTL 786


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 161/354 (45%), Gaps = 11/354 (3%)

Query: 81  PDLVHEVLQLSYDSPSSAVD-----FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           PD+V   + +      S V      F    G+G +     +N+++    K GR ++    
Sbjct: 204 PDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIF 263

Query: 136 VRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
           ++ +   G  S + +   I  S C  G++ +A+     M   G    VV  N L++ +C 
Sbjct: 264 LKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLC- 322

Query: 195 QENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           Q+    +AL  L  + K    P+  SF  L++G+     ++ A +    MV R  + P+ 
Sbjct: 323 QKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCY-PD- 380

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           ++ Y   L  L +  +VD+A+  L  +  + C P+L  ++  +D L+K+  +  AV+L +
Sbjct: 381 IVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLE 440

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
             M + G  PD +T   +   L +  +VHE  KFFH +     +P      + +  L  A
Sbjct: 441 -EMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKA 499

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
            +  +AI+    ++ NG  P EAS   L+ G+   G   +  + + E+ +R ++
Sbjct: 500 QQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRGLV 553



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 174/395 (44%), Gaps = 47/395 (11%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  +   ++N++++   K+G  E+   A+RV+    V  +  T+ ++  S C  GK  +A
Sbjct: 134 GAVIDANSYNVLINAYCKSGEIEE---ALRVLDHTSVAPNAATYDAVLCSLCDRGKLKQA 190

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
           +   D         DVV    L+ A C+ E+   +A++  N ++ K   PD  ++ +L++
Sbjct: 191 MQVLDRQLQSKCYPDVVTCTVLIDATCK-ESGVGQAMKLFNEMRGKGCKPDVVTYNVLIK 249

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ KEG ++EA   F + +  +    + V+++   L +L  G +  +A+K L  M  + C
Sbjct: 250 GFCKEGRLDEA-IIFLKKLPSYGCQSD-VISHNMILRSLCSGGRWMDAMKLLATMLRKGC 307

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIM------------------------------ 315
           FP++  F+  ++ L +      A+ + ++M                              
Sbjct: 308 FPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIE 367

Query: 316 ----MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
               MV  G +PD +TYN++   L K+ +V +      ++      P+ ++  T I  LL
Sbjct: 368 HLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLL 427

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----L 427
              + E+A+E+   +   G+ P   +   ++ GL   G++ +  +F   +    I     
Sbjct: 428 KVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAF 487

Query: 428 IYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 462
           IY   M  L KA    S ++  + D +   CK ++
Sbjct: 488 IYNSIMMGLCKA-QQTSLAIDFLVDMVANGCKPTE 521


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 145/301 (48%), Gaps = 6/301 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +     +N++++ + K GR ++    +  M   G   ++ T   I  S C  G++ +
Sbjct: 272 KGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMD 331

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A      M   G    VV  N L++ +CR+     RA++ L ++ K    P+  S+  LL
Sbjct: 332 AERLLSDMLRKGCSPSVVTFNILINFLCRKR-LLGRAIDVLEKMPKHGCVPNSLSYNPLL 390

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ +E  ++ A +    MV R  + P+ ++ Y T L  L +  +VD A++ L  +  + 
Sbjct: 391 HGFCQEKKMDRAIEYLEIMVSRGCY-PD-IVTYNTLLTALCKDGKVDAAVEILNQLSSKG 448

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C P L  ++  +D L K+  + +AV+L +  M   G  PD +TY+ +   L +  +V E 
Sbjct: 449 CSPVLITYNTVIDGLTKVGKTEYAVELLE-EMRRKGLKPDIITYSTLLRGLGREGKVDEA 507

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            K FH+M     +P+ +     +  L  A +   AI+   Y++E G  P EA+   L+ G
Sbjct: 508 IKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEG 567

Query: 405 L 405
           +
Sbjct: 568 I 568



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 151/333 (45%), Gaps = 9/333 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N+++    K+G  ++   A+ V++   V   + T+ +I  S C +GK  EA+   D  
Sbjct: 178 TYNVLIGGYCKSGEIDK---ALEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQ 234

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
                  DV+    L+ A C  ++   +A++ L+ + KK   PD  ++ +L+ G  KEG 
Sbjct: 235 LQRECYPDVITYTILIEATC-NDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGR 293

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA K    M   +   P +V+ +   L ++    +  +A + L  M  + C P++  F
Sbjct: 294 LDEAIKFLNNM-PSYGCKP-NVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTF 351

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  ++ L +      A+ + +  M  HG  P+SL+YN +     + K++    ++   M+
Sbjct: 352 NILINFLCRKRLLGRAIDVLE-KMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMV 410

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P  +   T +T L    + + A+EI N +   G  P+  + N ++ GL  +G+  
Sbjct: 411 SRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTE 470

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
                 EEM  + +    +T   L +    E +
Sbjct: 471 YAVELLEEMRRKGLKPDIITYSTLLRGLGREGK 503



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 147/333 (44%), Gaps = 7/333 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +A N+ +  L +NG  E+    + R++ +  +  +    S+   +C +GK  +A    ++
Sbjct: 107 FASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEI 166

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           +   G   DV+  N L+   C+   +  +ALE L R+   V PD  ++  +L      G 
Sbjct: 167 LENSGAVPDVITYNVLIGGYCKS-GEIDKALEVLERMS--VAPDVVTYNTILRSLCDSGK 223

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA +     ++R E  P+ V+ Y   +        V +A+K L  M+ + C P +  +
Sbjct: 224 LKEAMEVLDRQLQR-ECYPD-VITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTY 281

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  ++ + K      A++  + M  + G  P+ +T+N+I   +    R  + E+   +M+
Sbjct: 282 NVLINGICKEGRLDEAIKFLNNMPSY-GCKPNVITHNIILRSMCSTGRWMDAERLLSDML 340

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +    P+ +     I  L        AI++   + ++G +P   S N LL G     ++ 
Sbjct: 341 RKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMD 400

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
               + E M++R      VT + L  A   + +
Sbjct: 401 RAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGK 433



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 154/354 (43%), Gaps = 11/354 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++  L  +G+ ++    + R ++ +    + T+  + ++ C      +A+   D M
Sbjct: 210 TYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEM 269

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G + DVV  N L++ IC+ E +   A++FLN +      P+  +  I+L      G 
Sbjct: 270 RKKGCKPDVVTYNVLINGICK-EGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGR 328

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             +A +   +M+ R   +P  V+ +   +  L R + +  A+  L  M    C P    +
Sbjct: 329 WMDAERLLSDML-RKGCSPS-VVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSY 386

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  L    +      A++  +IM V  G +PD +TYN +   L K+ +V    +  +++ 
Sbjct: 387 NPLLHGFCQEKKMDRAIEYLEIM-VSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLS 445

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P  +   T I  L    + E A+E+   +   G+ P   + + LL GL   G++ 
Sbjct: 446 SKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVD 505

Query: 413 DVRRFAEEMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 462
           +  +   +M    I    + Y   M  L KA    SR++  +   +E+ CK ++
Sbjct: 506 EAIKIFHDMEGLSIKPSAVTYNAIMLGLCKA-QQTSRAIDFLAYMVEKGCKPTE 558


>gi|15219049|ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g52640, mitochondrial; Flags: Precursor
 gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis thaliana]
 gi|62320530|dbj|BAD95108.1| hypothetical protein [Arabidopsis thaliana]
 gi|332194712|gb|AEE32833.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 172/413 (41%), Gaps = 45/413 (10%)

Query: 66  DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVL 123
           DD+E  L       + +LV +VL+   +    A  FF WA R      S  +++++V++L
Sbjct: 53  DDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWARRIPDFAHSLESYHILVEIL 112

Query: 124 GKNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           G + +F  +W+ +   +E     + +  F  +F +Y  A    EA  +F+ M   G++  
Sbjct: 113 GSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEFGIKPC 172

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTF 240
           V  ++ LL ++C  +   + A EF  + K   + P   +++IL+ GW +  +   A K F
Sbjct: 173 VDDLDQLLHSLC-DKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVF 231

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVD----------------------------- 271
            EM+ER       +LAY   L  L +   VD                             
Sbjct: 232 DEMLERN--CVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYC 289

Query: 272 ------EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
                  A K L  MK  +  P +  F++ +  L K      A  L D  M+  GA PD+
Sbjct: 290 DAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLD-EMIQKGANPDT 348

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
            TYN I      +  V+   K    M + +  P        + +L+     + A EIW  
Sbjct: 349 WTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEG 408

Query: 386 ILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437
           + E    P  A+   ++ GL R  G+L +  R+ E M++  I  Y  T+  L+
Sbjct: 409 MSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLR 461


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 158/335 (47%), Gaps = 8/335 (2%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           R+SP  Y +N+++      G  ++       M+ +G L ++ T+ ++ D+YC  G+ DEA
Sbjct: 5   RVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEA 64

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
                 MS  G++ ++++ N +++ +CR E     A E L  +  K   PD  ++  LL 
Sbjct: 65  FGLLKSMSSKGMQPNLISYNVIINGLCR-EGSMKEAWEILEEMGYKGFTPDEVTYNTLLN 123

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ KEGN  +A     EMV R   +P  V+ Y   + ++ + + ++ A++F   M+    
Sbjct: 124 GYCKEGNFHQALVIHAEMV-RNGVSPS-VVTYTALINSMCKARNLNRAMEFFDQMRIRGL 181

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P  + ++  +D   +      A ++ +  M   G  P  +TYN         +R+ E  
Sbjct: 182 RPNERTYTTLIDGFSRQGLLNEAYRILN-EMTESGFSPSVVTYNAFIHGHCVLERMEEAL 240

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
               EM++    P  ++ +T I+      E + A ++   ++E G+ P   + + L+ GL
Sbjct: 241 GVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 300

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
             + RL++    ++EML+  +   E T   L  A+
Sbjct: 301 CEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAY 335



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 7/215 (3%)

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           ++  V P+  ++ IL+ G+   G +++    FGEM ER    P +V+ Y T +    +  
Sbjct: 2   IRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEM-ERNGCLP-NVVTYNTLIDAYCKMG 59

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSL 326
           ++DEA   L+ M  +   P L  ++  ++ L +      A   W+I+  M + G  PD +
Sbjct: 60  RIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEA---WEILEEMGYKGFTPDEV 116

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           TYN +     K    H+      EM++N   P+ +     I  +  A     A+E ++ +
Sbjct: 117 TYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQM 176

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
              G+ P E +   L+ G    G L++  R   EM
Sbjct: 177 RIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEM 211



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 144/335 (42%), Gaps = 28/335 (8%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++ D +   G  +EA    + M+  G    VV  N+ +   C  E    R  E L  
Sbjct: 187 TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLE----RMEEALGV 242

Query: 209 VKKIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           V+++V+    PD  S++ ++ G+ ++G ++ A +   EMVE+   +P+ V  Y + +  L
Sbjct: 243 VQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEK-GVSPDAV-TYSSLIQGL 300

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
              +++ EA    + M      P    ++  ++      D   A+ L D  M+  G  PD
Sbjct: 301 CEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHD-EMIHKGFLPD 359

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI------ 378
           ++TY+++   L K  R  E ++   ++I  E  P+ +   T I    + +   +      
Sbjct: 360 AVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKG 419

Query: 379 ---------AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
                    A  ++  ++E    P EA  N ++ G    G L       +EM++   + +
Sbjct: 420 FCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPH 479

Query: 430 EVTMHKLKKAFYNES--RSMRDIFDSLERRCKTSQ 462
            VT+  L KA + E     M ++     R C+ ++
Sbjct: 480 TVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNE 514


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 156/322 (48%), Gaps = 22/322 (6%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS---------IFDSYCGAGKYDEA 166
           +N++V+ + + GR +   +A+  +K     +LP++           +    C A ++++A
Sbjct: 231 YNVVVNGICQEGRVD---DAIEFLK-----NLPSYGCEPNTVSYNIVLKGLCTAERWEDA 282

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
                 M   G   +VV  N L+S +CR+      ALE L ++ K    P+  S+  LL 
Sbjct: 283 EELMGEMGQKGCPPNVVTFNMLISFLCRK-GLVEPALEVLEQIPKYGCTPNSLSYNPLLH 341

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + K+  +++A      MV R  + P+ +++Y T L  L R  +VD A++ L  +K + C
Sbjct: 342 AFCKQKKMDKAMAFLDLMVSRGCY-PD-IVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 399

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P L  ++  +D L K   +  A++L +  MV  G  PD +TY+ I   L +  R+ +  
Sbjct: 400 APVLISYNTVIDGLTKAGKTKEALELLN-EMVSKGLQPDIITYSTIAAGLCREDRIEDAI 458

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           + F ++     +P  +     I  L    E   AI+++ Y++ NG +P E++   L+ GL
Sbjct: 459 RAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGL 518

Query: 406 RNLGRLSDVRRFAEEMLNRRIL 427
              G + + R   +E+ +R ++
Sbjct: 519 AYEGLIKEARDLLDELCSRGVV 540



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 160/380 (42%), Gaps = 47/380 (12%)

Query: 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG 161
            R  G  +R        ++  L  +GR  +   A RV+   G   +  + ++   YCGAG
Sbjct: 85  LRLVGSARRPDAGTCAALIKKLSASGRTAE---ARRVLAACGP-DVMAYNAMVAGYCGAG 140

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSF 220
           + D A      M    VE D    N+L+  +C +  +T+ AL  L+  +++   PD  ++
Sbjct: 141 QLDAARRLVAEMP---VEPDAYTYNTLIRGLCGR-GRTANALAVLDEMLRRRCVPDVVTY 196

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR-- 278
            ILLE   K    ++A K   EM  R +     ++ Y   +  + +  +VD+A++FL+  
Sbjct: 197 TILLEATCKRSGYKQAMKLLDEM--RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNL 254

Query: 279 --------------VMKG-------------------ENCFPTLKFFSNALDILVKLNDS 305
                         V+KG                   + C P +  F+  +  L +    
Sbjct: 255 PSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLV 314

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
             A+++ +  +  +G  P+SL+YN +     K K++ +   F   M+     P  ++  T
Sbjct: 315 EPALEVLE-QIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNT 373

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
            +T L  + E ++A+E+ + + + G  P+  S N ++ GL   G+  +      EM+++ 
Sbjct: 374 LLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKG 433

Query: 426 ILIYEVTMHKLKKAFYNESR 445
           +    +T   +      E R
Sbjct: 434 LQPDIITYSTIAAGLCREDR 453


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 147/328 (44%), Gaps = 7/328 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +N ++  L  NGR +      R M+ +   S+ T+  + D+ C + +  +A +  + M  
Sbjct: 205 YNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIE 264

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G   +VV  N+L++  C+  N     + F   ++    PD  ++ IL++G+ K+   ++
Sbjct: 265 AGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQD 324

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
             K   EMV ++   P + + Y T + +L++  +  +A    ++M   +C P+   F+  
Sbjct: 325 GAKLLQEMV-KYGCEP-NFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLM 382

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           +D+  K+     A +L+  +M   G  PD  TYN++     +  R+ +  +    M +  
Sbjct: 383 IDMFCKVGQLDLAYELFQ-LMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG 441

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
             P  +   + ++ L  A + + A E++  +   G      + + L+ GL    RL D  
Sbjct: 442 CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAE 501

Query: 416 RFAEEMLNRR----ILIYEVTMHKLKKA 439
           +   EM        ++ Y + +H   KA
Sbjct: 502 KLLREMERNGSAPDVVAYTILIHGFCKA 529



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 133/277 (48%), Gaps = 6/277 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +V  L K  + ++ +    V++  G  L + T +++ D  C + + D+A      M 
Sbjct: 449 YNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREME 508

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
            +G   DVVA   L+   C+ + Q  ++L F +  + K   P   +++I+++   K   V
Sbjct: 509 RNGSAPDVVAYTILIHGFCKAD-QLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARV 567

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +       M+ER    P+ ++ Y + +  L +    DEA +  ++MK   C PT+  ++
Sbjct: 568 RDGCMLLKTMLER-GVTPDAIV-YTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYN 625

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D L K++    A+ L ++M    G  PD++TYN +F+   K+    +  + F  M  
Sbjct: 626 VLVDKLCKVSRLDEAIHLLEVMES-DGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKS 684

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
               PTP   +  +T L+  ++ + A+EIW   LE G
Sbjct: 685 RGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAG 721



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 145/337 (43%), Gaps = 12/337 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           R  + S + +NLM+D+  K G+ +  +   ++M + G L  + T+  +    C A + D+
Sbjct: 370 RDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDD 429

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           A    + M+  G   DVV  NS++S +C+  Q ++     E L      +D    + + L
Sbjct: 430 ARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVV--TCSTL 487

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G  K   +++A K   EM ER    P+ V+AY   +    +  Q+D++L F   M  +
Sbjct: 488 IDGLCKSRRLDDAEKLLREM-ERNGSAPD-VVAYTILIHGFCKADQLDKSLAFFSEMLDK 545

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
            C PT+  +S  +D L K         L   M+   G  PD++ Y  + + L K+    E
Sbjct: 546 GCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLE-RGVTPDAIVYTSVIDGLCKSDSYDE 604

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
             + +  M +    PT +     +  L      + AI +   +  +G LP   + N +  
Sbjct: 605 AYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFD 664

Query: 404 GLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKL 436
           G           R  + M +R       +Y + + KL
Sbjct: 665 GFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKL 701



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 158/368 (42%), Gaps = 19/368 (5%)

Query: 64  SSDDIESA---LACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA-GR-GQRLSPYAWNL 118
           SS+D E A   L   G    P +V  VLQ   D    AV FF W  G+ G + S +  N 
Sbjct: 79  SSEDFELASRRLCEFGGYLVPSVVGRVLQ-QLDDLDKAVKFFDWCTGQPGYKHSKFTCNC 137

Query: 119 MVDVLGKNGRFEQMWNAVR-----VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++    +  + ++ ++  +     +   D +    T++++ + +C A  + +A    D M
Sbjct: 138 LLSAFVRKKKAQEAYDLFKNHRCGLCSPDSI----TYSTLINGFCKARDFQQAYRLLDEM 193

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+       N+++  +C    +   AL     +++   P   ++ IL++   K   +
Sbjct: 194 EKRGIVPHNAVYNTIIKGLC-DNGRVDSALVHYRDMQRNCAPSVITYTILVDALCKSARI 252

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A+    +M+E       +V+ Y T +    +   +DEA+     M   +C P +  ++
Sbjct: 253 SDASLILEDMIE--AGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYN 310

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D   K        +L    MV +G  P+ +TYN + + L+K+ +  +       M++
Sbjct: 311 ILIDGYCKQERPQDGAKLLQ-EMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLR 369

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
            + +P+       I M     + ++A E++  + + G LP   + N ++ G     R+ D
Sbjct: 370 RDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDD 429

Query: 414 VRRFAEEM 421
            R+  E M
Sbjct: 430 ARQLLERM 437



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 111/262 (42%), Gaps = 5/262 (1%)

Query: 164 DEAVMSFD-VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           D+AV  FD      G +      N LLSA  R++        F N    +  PD  +++ 
Sbjct: 113 DKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYST 172

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+ K  + ++A +   EM +R      H   Y T +  L    +VD AL   R M+ 
Sbjct: 173 LINGFCKARDFQQAYRLLDEMEKR--GIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ- 229

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
            NC P++  ++  +D L K    + A  + +  M+  G  P+ +TYN +     K   + 
Sbjct: 230 RNCAPSVITYTILVDALCKSARISDASLILED-MIEAGCAPNVVTYNTLINGFCKLGNMD 288

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E    F++M++N   P        I      + P+   ++   +++ G  P   + N L+
Sbjct: 289 EAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLM 348

Query: 403 VGLRNLGRLSDVRRFAEEMLNR 424
             L   G+  D    A+ ML R
Sbjct: 349 DSLVKSGKYIDAFNLAQMMLRR 370


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 155/363 (42%), Gaps = 40/363 (11%)

Query: 115 AWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           ++N+M++ L K G+F++   +W+  R+ K +    L T++++    CG+G  D A   + 
Sbjct: 257 SYNVMINGLCKCGKFDESFEIWH--RMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYK 314

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M+ +GV  DVV  N++L+   R   +    LE    ++K       S+ IL+ G  +  
Sbjct: 315 EMAENGVSPDVVVYNTMLNGYLRA-GRIEECLELWKVMEKEGCRTVVSYNILIRGLFENA 373

Query: 232 NVEEA---------------NKTFGEMVERFEWNPE------------------HVLAYE 258
            V+EA               + T+G +V     N                       AY 
Sbjct: 374 KVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYS 433

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
           + +  L R  ++DE    L  M    C P     +  ++  V+ +    A++ +   MV 
Sbjct: 434 SMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFG-NMVS 492

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            G FP  +TYN +   L K +R  E      EM+   W+P  +  +  +  L    + ++
Sbjct: 493 KGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDM 552

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
           A+ +W   LE G  P     N ++ GL + G++ D  +   EM  R+ +   VT + L +
Sbjct: 553 ALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLME 612

Query: 439 AFY 441
            FY
Sbjct: 613 GFY 615



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 143/338 (42%), Gaps = 14/338 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRF---EQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           RG       +N+++D   K G      ++W   R++K   V  ++P++  + +  C  GK
Sbjct: 213 RGVTPDVACYNILIDGFFKKGDILNASEIWE--RLLKGPSVYPNIPSYNVMINGLCKCGK 270

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           +DE+   +  M  +   QD+   ++L+  +C   N       +    +  V PD   +  
Sbjct: 271 FDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNT 330

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +L G+ + G +EE  + +  M +        V++Y   +  L    +VDEA+    ++  
Sbjct: 331 MLNGYLRAGRIEECLELWKVMEKE---GCRTVVSYNILIRGLFENAKVDEAISIWELLPE 387

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           ++C      +   +  L K      A+ + +      G   D+  Y+ +   L +  R+ 
Sbjct: 388 KDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDL-DTFAYSSMINGLCREGRLD 446

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           EV     +M K+  +P P  C   I   + A + E A+  +  ++  G  P   + N L+
Sbjct: 447 EVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLI 506

Query: 403 VGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKL 436
            GL    R S+     +EML++     ++ Y + M+ L
Sbjct: 507 NGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGL 544



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 137/329 (41%), Gaps = 45/329 (13%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFA--SIFDSYCGAGKYDEAVMSF 170
            + ++V  L KNG   +   A+ +++E  +G   L TFA  S+ +  C  G+ DE     
Sbjct: 396 TYGVLVHGLCKNGYLNK---ALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVL 452

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           D M+ HG + +    N++++   R          F N V K   P   ++  L+ G  K 
Sbjct: 453 DQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKA 512

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
               EA     EM+ +  W P +++ Y   +  L +GK++D AL                
Sbjct: 513 ERFSEAYALVKEMLHK-GWKP-NMITYSLLMNGLCQGKKLDMALNL-------------- 556

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +  AL+                      G  PD   +N+I   L  + +V +  + + E
Sbjct: 557 -WCQALE---------------------KGFKPDVKMHNIIIHGLCSSGKVEDALQLYSE 594

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M + +  P  +   T +       + E A +IW++IL+ G  P   S N  L GL +  R
Sbjct: 595 MKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHR 654

Query: 411 LSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
           +SD   F  + ++R +L   +T + L +A
Sbjct: 655 ISDAVGFLNDAVDRGVLPTAITWNILVRA 683



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 172/392 (43%), Gaps = 13/392 (3%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P  V ++L+ S  +P SA+  F    R  G   +PY ++ ++  L        +   V 
Sbjct: 9   SPKRVIKLLK-SEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVE 67

Query: 138 VMKEDGVLSLPTFA-SIFDSYCGAGKYDEAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQ 195
           +++          A ++  +Y      D+A+  F  M  + G +  + + NSLL+A+   
Sbjct: 68  LIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIES 127

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                    FL      + P+  ++ IL++   ++   ++A +    M E+  ++P+ V 
Sbjct: 128 NKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQ-GFSPD-VF 185

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           +Y T + +L +   + +ALK    M      P +  ++  +D   K  D  +A ++W+ +
Sbjct: 186 SYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERL 245

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           +     +P+  +YN++   L K  +  E  + +H M KNE        +T I  L  +  
Sbjct: 246 LKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGN 305

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS---DVRRFAEEMLNRRILIYEVT 432
            + A  ++  + ENG+ P     N +L G    GR+    ++ +  E+   R ++ Y + 
Sbjct: 306 LDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNIL 365

Query: 433 MHKL-KKAFYNESRSMRDIFDSLERRCKTSQM 463
           +  L + A  +E+ S+ ++    E+ C    M
Sbjct: 366 IRGLFENAKVDEAISIWELLP--EKDCCADSM 395



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 89/415 (21%), Positives = 174/415 (41%), Gaps = 26/415 (6%)

Query: 28  TSHNPHRP-----TRPRFPTHLDAPYISSS--ARIICEILAHASSDDIESALACTGIIPT 80
           +  NPH       +  RFP +   PY+      R+    L    S  +E  L  T     
Sbjct: 19  SEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVE--LIRTQKCKC 76

Query: 81  PDLVHEVLQLSYDS---PSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           P+ V   +  +Y     P  A+D F+      G +    ++N +++ L ++ ++++  + 
Sbjct: 77  PEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESF 136

Query: 136 VRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
               +  G+  +L T+  +    C   ++D+A    + M   G   DV +  +L++++ +
Sbjct: 137 FLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAK 196

Query: 195 QENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE- 252
                S AL+  + + ++ V PD   + IL++G+ K+G++  A+    E+ ER    P  
Sbjct: 197 N-GYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNAS----EIWERLLKGPSV 251

Query: 253 --HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
             ++ +Y   +  L +  + DE+ +    MK       L  +S  +  L    +   A +
Sbjct: 252 YPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATR 311

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           ++   M  +G  PD + YN +    ++  R+ E  + +  M K E   T ++    I  L
Sbjct: 312 VYK-EMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEK-EGCRTVVSYNILIRGL 369

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
            +  + + AI IW  + E        +   L+ GL   G L+      EE  N R
Sbjct: 370 FENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGR 424


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 154/319 (48%), Gaps = 22/319 (6%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS---------IFDSYCGAGKYDEA 166
           +N++V+ + + GR +   +A+  +K     +LP++           +    C A ++++A
Sbjct: 233 YNVVVNGICQEGRVD---DAIEFLK-----NLPSYGCEPNTVSYNIVLKGLCTAERWEDA 284

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
                 M   G   +VV  N L+S +CR+      ALE L ++ K    P+  S+  LL 
Sbjct: 285 EELMGEMGQKGCPPNVVTFNMLISFLCRK-GLVEPALEVLEQIPKYGCSPNSLSYNPLLH 343

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + K+  +++A      MV R  + P+ +++Y T L  L R  +VD A++ L  +K + C
Sbjct: 344 AFCKQKKMDKAMAFLDLMVSRGCY-PD-IVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 401

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P L  ++  +D L K   +  A++L +  MV  G  PD +TY+ I   L +  R+ +  
Sbjct: 402 APVLISYNTVIDGLTKAGKTKEALELLN-EMVSKGLQPDIITYSTIAAGLCREDRIEDAI 460

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           + F ++     +P  +     I  L    E   AI+++ Y++ NG +P E++   L+ GL
Sbjct: 461 RAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGL 520

Query: 406 RNLGRLSDVRRFAEEMLNR 424
              G + + R   +E+ +R
Sbjct: 521 AYEGLIKEARDLLDELCSR 539



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 152/334 (45%), Gaps = 11/334 (3%)

Query: 115 AWNLMVDVLGKNGRFE--QMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           A+N M+      G+ +  + W A R ++ D      T  ++    CG G+   A+   D 
Sbjct: 130 AYNAMMAGYCGAGQVDAARRWCAERAVERDAY----TCDTLIRGLCGRGRTANALAVLDE 185

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M       DVV    LL A C++     +A++ L+ ++ K   PD  ++ +++ G  +EG
Sbjct: 186 MLRRRCVPDVVTYTILLEATCKRSGY-KQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEG 244

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V++A + F + +  +   P  V +Y   L  L   ++ ++A + +  M  + C P +  
Sbjct: 245 RVDDAIE-FLKNLPSYGCEPNTV-SYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVT 302

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           F+  +  L +      A+++ +  +  +G  P+SL+YN +     K K++ +   F   M
Sbjct: 303 FNMLISFLCRKGLVEPALEVLE-QIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 361

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +     P  ++  T +T L  + E ++A+E+ + + + G  P+  S N ++ GL   G+ 
Sbjct: 362 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 421

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            +      EM+++ +    +T   +      E R
Sbjct: 422 KEALELLNEMVSKGLQPDIITYSTIAAGLCREDR 455



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 65/135 (48%), Gaps = 1/135 (0%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N ++D L K G+ ++    +  M   G+   + T+++I    C   + ++A+ +F  +
Sbjct: 407 SYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKV 466

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  + V  N+++  +C++    S    F   +     P+  ++ IL+EG   EG +
Sbjct: 467 QDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLI 526

Query: 234 EEANKTFGEMVERFE 248
           +EA     E+  R E
Sbjct: 527 KEARDLLDELCSRGE 541


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 146/332 (43%), Gaps = 5/332 (1%)

Query: 97  SAVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           SA++ FR    +G     Y +  +V+ LGK GR ++  +    M E G+  ++PT+  + 
Sbjct: 118 SAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLM 177

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           D++   G+ D A+  F  M   G +  VV  N LL A+C      +    F         
Sbjct: 178 DAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCS 237

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  +++ L+ G  K G VEEA+K F EMV+R       ++ Y + L TL +   +D   
Sbjct: 238 PDSYTYSTLVNGLGKSGRVEEAHKVFREMVDR--GVAVDLVNYNSLLATLAKAGNMDRVW 295

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           K ++ M  +   P    F+  +D L K N    A +++   MV  G  PD ++YN++ + 
Sbjct: 296 KLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVF-ARMVESGCKPDLISYNILIDS 354

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
             +     +  +   EM++  + P      + I  L    + + A  +   +   G  P 
Sbjct: 355 YARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPD 414

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
             + N L+  L   G      R  ++M ++ +
Sbjct: 415 VVTYNRLMDMLGKRGENQRAARLFQQMKDKGV 446



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 116/252 (46%), Gaps = 4/252 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F +  G G     Y ++ +V+ LGK+GR E+     R M + GV + L  + S+  +   
Sbjct: 228 FHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAK 287

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           AG  D        MS  G   D  + N+++ A+ +     +    F   V+    PD  S
Sbjct: 288 AGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLIS 347

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + IL++ + + G+  +A +   EMVE   + PE    Y + +  L    QVDEA   L  
Sbjct: 348 YNILIDSYARFGDAAQARQMLEEMVEA-GFIPE-TKTYNSLIHWLATDGQVDEAFAVLEE 405

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M+   C P +  ++  +D+L K  ++  A +L+   M   G  PD+L+Y +  + L  + 
Sbjct: 406 METAGCRPDVVTYNRLMDMLGKRGENQRAARLFQ-QMKDKGVEPDTLSYAVRIDGLAFDD 464

Query: 340 RVHEVEKFFHEM 351
           R+ E    F +M
Sbjct: 465 RLDEALVLFKDM 476



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 145/312 (46%), Gaps = 8/312 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA-SIFDSYCG-AGKYDEAVMSFD 171
           +A+  ++D+L  +G FE+     + + + G   L  FA ++   Y G +G+ D A+  F 
Sbjct: 66  HAFTKLIDILVNSGEFERAELVYKKLVQKGC-QLDRFAYNVLIRYFGRSGQLDSAMEMFR 124

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
            M + G E D      L++A+ +    Q +R+  F   +++ + P+  ++ +L++ + K 
Sbjct: 125 EMKIKGSEPDEYTYGFLVNALGKAGRVQEARSF-FDAMLERGLTPNIPTYNLLMDAFRKV 183

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G ++ A   F EM +R  + P  V+ Y   L  L    +V  A K    M G+ C P   
Sbjct: 184 GQLDMALGLFAEM-KRRGFQPS-VVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSY 241

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +S  ++ L K      A +++   MV  G   D + YN +   L K   +  V K   E
Sbjct: 242 TYSTLVNGLGKSGRVEEAHKVFR-EMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKE 300

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M +  + P   +  T +  L  A++P+ A E++  ++E+G  P   S N L+      G 
Sbjct: 301 MSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGD 360

Query: 411 LSDVRRFAEEML 422
            +  R+  EEM+
Sbjct: 361 AAQARQMLEEMV 372



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 108/253 (42%), Gaps = 11/253 (4%)

Query: 188 LLSAICRQENQTSRALEFLNRVKKIV-DPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           L++A  R  N++  A +  N+ +     P   +F  L++     G  E A   + ++V++
Sbjct: 36  LITAYGRG-NKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQK 94

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP---TLKFFSNALDILVKLN 303
                    AY   +    R  Q+D A++  R MK +   P   T  F  NAL    K  
Sbjct: 95  --GCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALG---KAG 149

Query: 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
               A   +D M+   G  P+  TYN++ +   K  ++      F EM +  +QP+ +  
Sbjct: 150 RVQEARSFFDAMLE-RGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTY 208

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
              +  L  A     A ++++ +  +G  P   + + L+ GL   GR+ +  +   EM++
Sbjct: 209 NILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVD 268

Query: 424 RRILIYEVTMHKL 436
           R + +  V  + L
Sbjct: 269 RGVAVDLVNYNSL 281



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 6/155 (3%)

Query: 93  DSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTF 150
           + P +A + F R    G +    ++N+++D   + G   Q    +  M E G +    T+
Sbjct: 324 NKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTY 383

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC-RQENQTSRALEFLNRV 209
            S+       G+ DEA    + M   G   DVV  N L+  +  R ENQ  RA     ++
Sbjct: 384 NSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQ--RAARLFQQM 441

Query: 210 K-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           K K V+PD  S+A+ ++G   +  ++EA   F +M
Sbjct: 442 KDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDM 476



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 80/200 (40%), Gaps = 7/200 (3%)

Query: 261 LITLI----RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           L+ LI    RG +  +A       +   C PT+  F+  +DILV   +   A  ++   +
Sbjct: 33  LVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYK-KL 91

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
           V  G   D   YN++     ++ ++    + F EM     +P        +  L  A   
Sbjct: 92  VQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRV 151

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           + A   ++ +LE G+ P   + N L+   R +G+L        EM  R      VT + L
Sbjct: 152 QEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNIL 211

Query: 437 KKAFYNESR--SMRDIFDSL 454
             A  +  R  + R +F  +
Sbjct: 212 LDALCSAGRVGAARKLFHKM 231


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 142/317 (44%), Gaps = 10/317 (3%)

Query: 98  AVDFFRWAGRGQ-RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFD 155
           A++  R   +G  R +   +N++VD L K G   +       M   G+ + + T+ S+  
Sbjct: 180 AIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIH 239

Query: 156 SYCGAGKYDEAVMSFDVMSM-HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
            +CGAG++  AV   + M M   V  DV   N L+ A+C+          F   +K+ ++
Sbjct: 240 GFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLE 299

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  S   L+ GW   G + EA + F  MVER +    +V++Y T +    + K VDEAL
Sbjct: 300 PDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKL--PNVISYSTLINGYCKVKMVDEAL 357

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIF 332
           + L  M   N  P    ++  LD L K   S   +  WD++  M   G  PD +TYN++ 
Sbjct: 358 RLLTEMHQRNLVPDTVTYNCLLDGLSK---SGRVLYEWDLVEAMRASGQAPDLITYNVLL 414

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
           +  +K + + +    F  ++     P        I  L      + A EI+  +   G  
Sbjct: 415 DDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCR 474

Query: 393 PLEASANELLVGLRNLG 409
           P   + N ++ GLR  G
Sbjct: 475 PNIRTYNIMINGLRREG 491


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 152/319 (47%), Gaps = 22/319 (6%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS---------IFDSYCGAGKYDEA 166
           +N++V+ + + GR +   +A+  +K     +LP++           +    C A ++++A
Sbjct: 105 YNVVVNGICQEGRVD---DAIEFLK-----NLPSYGCEPNTVSYNIVLKGLCTAERWEDA 156

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
                 M   G   +VV  N L+S +CR+      ALE L ++ K    P+  S+  LL 
Sbjct: 157 EELMGEMGQKGCPPNVVTFNMLISFLCRK-GLVEPALEVLEQIPKYGCTPNSLSYNPLLH 215

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + K+  +++A      MV R  +    +++Y T L  L R  +VD A++ L  +K + C
Sbjct: 216 AFCKQKKMDKAMAFLDLMVSRGCY--PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 273

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P L  ++  +D L K   +  A++L +  MV  G  PD +TY+ I   L +  R+ +  
Sbjct: 274 APVLISYNTVIDGLTKAGKTKEALELLN-EMVSKGLQPDIITYSTIAAGLCREDRIEDAI 332

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           + F ++     +P  +     I  L    E   AI+++ Y++ NG +P E++   L+ GL
Sbjct: 333 RAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGL 392

Query: 406 RNLGRLSDVRRFAEEMLNR 424
              G + + R   +E+ +R
Sbjct: 393 AYEGLIKEARDLLDELCSR 411



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 138/298 (46%), Gaps = 5/298 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++    CG G+   A+   D M       DVV    LL A C++     +A++ L+ 
Sbjct: 34  TYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGY-KQAMKLLDE 92

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++ K   PD  ++ +++ G  +EG V++A + F + +  +   P  V +Y   L  L   
Sbjct: 93  MRDKGCTPDIVTYNVVVNGICQEGRVDDAIE-FLKNLPSYGCEPNTV-SYNIVLKGLCTA 150

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           ++ ++A + +  M  + C P +  F+  +  L +      A+++ +  +  +G  P+SL+
Sbjct: 151 ERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLE-QIPKYGCTPNSLS 209

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +     K K++ +   F   M+     P  ++  T +T L  + E ++A+E+ + + 
Sbjct: 210 YNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLK 269

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           + G  P+  S N ++ GL   G+  +      EM+++ +    +T   +      E R
Sbjct: 270 DKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDR 327


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 156/322 (48%), Gaps = 22/322 (6%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS---------IFDSYCGAGKYDEA 166
           +N++V+ + + GR +   +A+  +K     +LP++           +    C A ++++A
Sbjct: 30  YNVVVNGICQEGRVD---DAIEFLK-----NLPSYGCEPNTVSYNIVLKGLCTAERWEDA 81

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
                 M   G   +VV  N L+S +CR+      ALE L ++ K    P+  S+  LL 
Sbjct: 82  EELMGEMGQKGCPPNVVTFNMLISFLCRK-GLVEPALEVLEQIPKYGCTPNSLSYNPLLH 140

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + K+  +++A      MV R  + P+ +++Y T L  L R  +VD A++ L  +K + C
Sbjct: 141 AFCKQKKMDKAMAFLDLMVSRGCY-PD-IVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 198

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P L  ++  +D L K   +  A++L +  MV  G  PD +TY+ I   L +  R+ +  
Sbjct: 199 APVLISYNTVIDGLTKAGKTKEALELLN-EMVSKGLQPDIITYSTIAAGLCREDRIEDAI 257

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           + F ++     +P  +     I  L    E   AI+++ Y++ NG +P E++   L+ GL
Sbjct: 258 RAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGL 317

Query: 406 RNLGRLSDVRRFAEEMLNRRIL 427
              G + + R   +E+ +R ++
Sbjct: 318 AYEGLIKEARDLLDELCSRGVV 339



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 120/264 (45%), Gaps = 6/264 (2%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPD 216
           C    Y +A+   D M   G   D+V  N +++ IC QE +   A+EFL  +     +P+
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGIC-QEGRVDDAIEFLKNLPSYGCEPN 61

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             S+ I+L+G       E+A +  GEM ++    P +V+ +   +  L R   V+ AL+ 
Sbjct: 62  TVSYNIVLKGLCTAERWEDAEELMGEMGQK--GCPPNVVTFNMLISFLCRKGLVEPALEV 119

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
           L  +    C P    ++  L    K      A+   D +MV  G +PD ++YN +   L 
Sbjct: 120 LEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLD-LMVSRGCYPDIVSYNTLLTALC 178

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           ++  V    +  H++      P  ++  T I  L  A + + A+E+ N ++  G+ P   
Sbjct: 179 RSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDII 238

Query: 397 SANELLVGLRNLGRLSD-VRRFAE 419
           + + +  GL    R+ D +R F +
Sbjct: 239 TYSTIAAGLCREDRIEDAIRAFGK 262


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 155/363 (42%), Gaps = 40/363 (11%)

Query: 115 AWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           ++N+M++ L K G+F++   +W+  R+ K +    L T++++    CG+G  D A   + 
Sbjct: 257 SYNVMINGLCKCGKFDESFEIWH--RMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYK 314

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M+ +GV  DVV  N++L+   R   +    LE    ++K       S+ IL+ G  +  
Sbjct: 315 EMAENGVSPDVVVYNTMLNGYLRA-GRIEECLELWKVMEKEGCRTVVSYNILIRGLFENA 373

Query: 232 NVEEA---------------NKTFGEMVERFEWNPE------------------HVLAYE 258
            V+EA               + T+G +V     N                       AY 
Sbjct: 374 KVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYS 433

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
           + +  L R  ++DE    L  M    C P     +  ++  V+ +    A++ +   MV 
Sbjct: 434 SMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFG-NMVS 492

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            G FP  +TYN +   L K +R  E      EM+   W+P  +  +  +  L    + ++
Sbjct: 493 KGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDM 552

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
           A+ +W   LE G  P     N ++ GL + G++ D  +   EM  R+ +   VT + L +
Sbjct: 553 ALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLME 612

Query: 439 AFY 441
            FY
Sbjct: 613 GFY 615



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 143/338 (42%), Gaps = 14/338 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRF---EQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           RG       +N+++D   K G      ++W   R++K   V  ++P++  + +  C  GK
Sbjct: 213 RGVTPDVACYNILIDGFFKKGDILNASEIWE--RLLKGPSVYPNIPSYNVMINGLCKCGK 270

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           +DE+   +  M  +   QD+   ++L+  +C   N       +    +  V PD   +  
Sbjct: 271 FDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNT 330

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +L G+ + G +EE  + +  M +        V++Y   +  L    +VDEA+    ++  
Sbjct: 331 MLNGYLRAGRIEECLELWKVMEKE---GCRTVVSYNILIRGLFENAKVDEAISIWELLPE 387

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           ++C      +   +  L K      A+ + +      G   D+  Y+ +   L +  R+ 
Sbjct: 388 KDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDL-DTFAYSSMINGLCREGRLD 446

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           EV     +M K+  +P P  C   I   + A + E A+  +  ++  G  P   + N L+
Sbjct: 447 EVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLI 506

Query: 403 VGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKL 436
            GL    R S+     +EML++     ++ Y + M+ L
Sbjct: 507 NGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGL 544



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 159/364 (43%), Gaps = 10/364 (2%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P  V ++L+ S  +P SA+  F    R  G   +PY ++ ++  L        +   V 
Sbjct: 9   SPKRVIKLLK-SEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVE 67

Query: 138 VMKEDGVLSLPTFA-SIFDSYCGAGKYDEAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQ 195
           +++          A ++  +Y      D+A+  F  M  + G +  + + NSLL+A+   
Sbjct: 68  LIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIES 127

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                    FL      + P+  ++ IL++   ++   ++A +    M E+  ++P+ V 
Sbjct: 128 NKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQ-GFSPD-VF 185

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           +Y T + +L +   + +ALK    M      P +  ++  +D   K  D  +A ++W+ +
Sbjct: 186 SYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERL 245

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           +     +P+  +YN++   L K  +  E  + +H M KNE        +T I  L  +  
Sbjct: 246 LKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGN 305

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS---DVRRFAEEMLNRRILIYEVT 432
            + A  ++  + ENG+ P     N +L G    GR+    ++ +  E+   R ++ Y + 
Sbjct: 306 LDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNIL 365

Query: 433 MHKL 436
           +  L
Sbjct: 366 IRGL 369



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 113/279 (40%), Gaps = 45/279 (16%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFA--SIFDSYCGAGKYDEAVMSF 170
            + ++V  L KNG   +   A+ +++E  +G   L TFA  S+ +  C  G+ DE     
Sbjct: 396 TYGVLVHGLCKNGYLNK---ALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVL 452

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           D M+ HG + +    N++++   R          F N V K   P   ++  L+ G  K 
Sbjct: 453 DQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKA 512

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
               EA     EM+ +  W P +++ Y   +  L +GK++D AL                
Sbjct: 513 ERFSEAYALVKEMLHK-GWKP-NMITYSLLMNGLCQGKKLDMALNL-------------- 556

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +  AL+                      G  PD   +N+I   L  + +V +  + + E
Sbjct: 557 -WCQALE---------------------KGFKPDVKMHNIIIHGLCSSGKVEDALQLYSE 594

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
           M + +  P  +   T +       + E A +IW++IL++
Sbjct: 595 MKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQS 633



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 89/415 (21%), Positives = 174/415 (41%), Gaps = 26/415 (6%)

Query: 28  TSHNPHRP-----TRPRFPTHLDAPYISSS--ARIICEILAHASSDDIESALACTGIIPT 80
           +  NPH       +  RFP +   PY+      R+    L    S  +E  L  T     
Sbjct: 19  SEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVE--LIRTQKCKC 76

Query: 81  PDLVHEVLQLSYDS---PSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           P+ V   +  +Y     P  A+D F+      G +    ++N +++ L ++ ++++  + 
Sbjct: 77  PEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESF 136

Query: 136 VRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
               +  G+  +L T+  +    C   ++D+A    + M   G   DV +  +L++++ +
Sbjct: 137 FLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAK 196

Query: 195 QENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE- 252
                S AL+  + + ++ V PD   + IL++G+ K+G++  A+    E+ ER    P  
Sbjct: 197 N-GYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNAS----EIWERLLKGPSV 251

Query: 253 --HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
             ++ +Y   +  L +  + DE+ +    MK       L  +S  +  L    +   A +
Sbjct: 252 YPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATR 311

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           ++   M  +G  PD + YN +    ++  R+ E  + +  M K E   T ++    I  L
Sbjct: 312 VYK-EMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEK-EGCRTVVSYNILIRGL 369

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
            +  + + AI IW  + E        +   L+ GL   G L+      EE  N R
Sbjct: 370 FENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGR 424



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 109/242 (45%), Gaps = 4/242 (1%)

Query: 73  ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
            C   +    LVH + +  Y + + ++      GRG  L  +A++ M++ L + GR +++
Sbjct: 390 CCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGD-LDTFAYSSMINGLCREGRLDEV 448

Query: 133 WNAVRVMKEDGVLSLPTFA-SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G    P    ++ + +  A K ++A+  F  M   G    VV  N+L++ 
Sbjct: 449 AGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLING 508

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           + + E  +         + K   P+  ++++L+ G  +   ++ A   + + +E+  + P
Sbjct: 509 LSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEK-GFKP 567

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V  +   +  L    +V++AL+    MK   C P L   +  ++   K+ D   A ++
Sbjct: 568 D-VKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKI 626

Query: 312 WD 313
           WD
Sbjct: 627 WD 628


>gi|242062226|ref|XP_002452402.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
 gi|241932233|gb|EES05378.1| hypothetical protein SORBIDRAFT_04g025130 [Sorghum bicolor]
          Length = 506

 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 144/314 (45%), Gaps = 13/314 (4%)

Query: 63  ASSDDIESALA--CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA---GRGQRLSPYAWN 117
            S +D+   LA  C+ +  T  +   +L+   D   SA+ FF WA   G G   +P A N
Sbjct: 67  GSVEDLVRTLAAECSEVRLTSGVADSLLRRCGDDWKSALGFFLWAQSRGGGYSHTPCACN 126

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
            MVD+LGK  + ++MW+ +  M   G++++ T A        A ++ +A++ FD +   G
Sbjct: 127 RMVDLLGKMRQIDRMWDLLSEMHCRGLVTVDTIAKSIRRLAAARRWRDAILLFDQLEDLG 186

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           +E++   +N LL A+C+ E +   A E    +   + PD  +F I + GW     ++EA 
Sbjct: 187 LERNTETMNVLLDALCK-ERKVELAREVFVMLSPHIAPDAYTFNIFVHGWCSVRRIDEAM 245

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
            T  EM  R    P  V+ Y   L    + +      + L  M  + C P +  ++  + 
Sbjct: 246 WTIEEMKNR--GFPPIVITYTAVLEAYCKQRNFRRVYEILDSMSSQGCHPNVITYTMIMT 303

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH-EMIKNEW 356
            L K      A+ + D  M   G  PD+L YN +   L +   + E  + F  EM +N  
Sbjct: 304 SLTKCERFEEALSVSD-RMKSSGCKPDTLFYNALINLLGRAGHLFEANQVFRVEMPRN-- 360

Query: 357 QPTPLNCATAITML 370
              P N AT  TM+
Sbjct: 361 -VVPRNVATYNTMI 373



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 7/254 (2%)

Query: 114 YAWNLMVDVLGKNGRF-EQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFD 171
           Y +N+ V       R  E MW  +  MK  G   +  T+ ++ ++YC    +       D
Sbjct: 226 YTFNIFVHGWCSVRRIDEAMWT-IEEMKNRGFPPIVITYTAVLEAYCKQRNFRRVYEILD 284

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKE 230
            MS  G   +V+    +++++ + E +   AL   +R+K     PD   +  L+    + 
Sbjct: 285 SMSSQGCHPNVITYTMIMTSLTKCE-RFEEALSVSDRMKSSGCKPDTLFYNALINLLGRA 343

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G++ EAN+ F   + R    P +V  Y T +  L +  + D+AL  L+ M+ ++C P L+
Sbjct: 344 GHLFEANQVFRVEMPR-NVVPRNVATYNTMISILCQYGRDDDALDVLKEMEAQSCKPDLQ 402

Query: 291 FFSNALDILVKLNDSTHAVQ-LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
            +   L +L      T A+  L   +   +G   D  TY ++   L +        + + 
Sbjct: 403 TYQPLLRLLFGRRGQTGAIHHLLSELRDRNGLGLDLDTYTLLIHGLCRVGETDWAYQLYD 462

Query: 350 EMIKNEWQPTPLNC 363
           EM+ +E  P P  C
Sbjct: 463 EMVGSEIVPRPKTC 476


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 186/406 (45%), Gaps = 19/406 (4%)

Query: 64  SSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVD 121
           + + IE +L   G I  PDLV +V+    D P++A + F+WAG+  + +   +  N ++ 
Sbjct: 52  AGEGIEKSLGLYGDILVPDLVGKVIHRIPD-PNTAWEVFQWAGKQSKFTHNRFTCNNLLS 110

Query: 122 VLGKNGRFEQMW-----NAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           V  K  R E        +   V + D V    ++ ++ + +  AG   +A+  F  M   
Sbjct: 111 VYVKARRVEDAHLFFQSHMKNVFEPDEV----SYNTLMNGFFKAGDVKKALALFGEMKDS 166

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G+   + + N +L  +C    + S A E    +  I  P+  S+ I+++G  K   V++A
Sbjct: 167 GIAV-LRSHNIVLRGLC-SGGKISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKA 224

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
              F +MV++  + P+ V+ Y   +  L + ++V EA       + + C PT+  ++  +
Sbjct: 225 ITLFKQMVDKAIY-PD-VVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMI 282

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
           D L K     +A+ L+D M+      PD  TY+ +   L  + R  +  + + EM+    
Sbjct: 283 DGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGC 342

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYI-LENGILPLEASANELLVGLRNLGRLSDVR 415
            P  +   T +  L  +   + A+EI+  + + N   P   +   L+     + RL D  
Sbjct: 343 SPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAV 402

Query: 416 RFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERRCK 459
           + A+EM  R +L   VT   + +    ESR     ++F+S+ + CK
Sbjct: 403 KLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGKTCK 448



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/282 (19%), Positives = 125/282 (44%), Gaps = 7/282 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  ++D LGK  R ++ ++     +  G   ++ T+ ++ D  C  G+ + A+  +D M
Sbjct: 242 TYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDM 301

Query: 174 SMH-GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
                ++ D+   ++L++ +    N+  +A E    +      PD  ++  LL+G  K G
Sbjct: 302 VREPHLKPDMFTYSALINGL-NLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSG 360

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             ++A + F +M      +P +V+ Y   +    +  ++ +A+K  + M+G +  P    
Sbjct: 361 CEDKAMEIFRKMGVGNVCDP-NVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVT 419

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           F+  +  L K +    A +L++   +     PDS+ +N +     K  R+ + +K    M
Sbjct: 420 FTTVIQKLCKESRIDEAHELFE--SIGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRM 477

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           + +   PT       +T          A+ +++ ++E G  P
Sbjct: 478 LDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPP 519


>gi|116793367|gb|ABK26722.1| unknown [Picea sitchensis]
          Length = 198

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 84/147 (57%), Gaps = 2/147 (1%)

Query: 50  SSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ 109
           + S + IC+IL  + + D+   L  + +  +P LV EVL    ++   A  FF WAG+ Q
Sbjct: 34  AKSLKKICKILTSSPTADVSEVLQKSKVEASPKLVEEVLMRFENAGMQAYRFFEWAGKQQ 93

Query: 110 RL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167
               S  A+++++D LGK  ++  MW  V +MK  GVL+  TFA I   Y  A K +EAV
Sbjct: 94  DYAHSVEAYHIIIDSLGKIQQYGLMWTVVNLMKIKGVLTKETFAIIMRRYARAKKIEEAV 153

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICR 194
            +FD M   GV  D+ A NSLLSA+C+
Sbjct: 154 YTFDTMEKFGVLPDLEAFNSLLSALCK 180


>gi|356560394|ref|XP_003548477.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 612

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 178/428 (41%), Gaps = 49/428 (11%)

Query: 43  HLDAPYISSSARIICEILAHASS--DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVD 100
           HL    ++   + I  I+    S    I+  L    I+ +P+LV EVL  + +   +A  
Sbjct: 118 HLRDDGLAKDVKTILAIMHEVGSGPSQIKQKLEHCSIVLSPELVVEVLSRTRNDWEAAFT 177

Query: 101 FFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED----GVLSLPTFASIF 154
           FF WAG+  G   S   ++ M+ +LGK  +F+  WN +  M+       +++  T   + 
Sbjct: 178 FFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEEMRGGRNGLSLVTPQTLLIMI 237

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIV 213
             YC       A+ +F           +   +SLLSA+CR +N Q +  L F N  K + 
Sbjct: 238 RKYCAVHDVARAINTFYAYKRFNFRVGLEEFHSLLSALCRYKNVQDAEYLLFCN--KDVF 295

Query: 214 DPDGDSFAILLEGW-EKEGNVEEANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVD 271
             D  SF I+L GW     +   A + + EM++R     +H V++Y + +    +  ++ 
Sbjct: 296 PLDTKSFNIILNGWCNLIVSTSHAERIWHEMIKR---RIQHDVVSYGSIISCYSKSSKLY 352

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           + L+    MK     P  K ++  +  L K      AV L   M   +   PD +TYN +
Sbjct: 353 KVLRMFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTMEG-NDVTPDVVTYNSL 411

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE--------------PE 377
            + L K  +V E ++ F EM+K    PT         +L   +E              P 
Sbjct: 412 IKPLCKAHKVDEAKQLFDEMLKRHLSPTIQTFHAFFRILRTKEEVFELLDKMKELRCYPT 471

Query: 378 I------------------AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
           I                    +IW+ + E+ I    +S   L+ GL   G+L + +R+  
Sbjct: 472 IETYIMLIRKFCRWCQLDDVFKIWDAMREDEISHDRSSYIVLIHGLFLNGKLEEAQRYYA 531

Query: 420 EMLNRRIL 427
           EM  +  L
Sbjct: 532 EMQEKGFL 539



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 13/208 (6%)

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDST-HAVQLWDI 314
           + + L  L R K V +A   L   K  + FP   K F+  L+    L  ST HA ++W  
Sbjct: 268 FHSLLSALCRYKNVQDAEYLLFCNK--DVFPLDTKSFNIILNGWCNLIVSTSHAERIWH- 324

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
            M+      D ++Y  I  C  K+ ++++V + F EM K +  P        I  L    
Sbjct: 325 EMIKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDRKVYNAVIYALAKGR 384

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
             + A+ +   +  N + P   + N L+  L    ++ + ++  +EML R +     T H
Sbjct: 385 LVKEAVNLIGTMEGNDVTPDVVTYNSLIKPLCKAHKVDEAKQLFDEMLKRHLSPTIQTFH 444

Query: 435 KLKKAFYNESRSMRDIFDSLER----RC 458
               AF+   R+  ++F+ L++    RC
Sbjct: 445 ----AFFRILRTKEEVFELLDKMKELRC 468


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 179/386 (46%), Gaps = 15/386 (3%)

Query: 65  SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA-GRGQRLSPYAWNLMVDVL 123
           S +++S+LA      +   V + LQL   +P+ A+ FFRW   +G   +  ++ LM+++L
Sbjct: 79  SHELQSSLAELAPSLSKTTVLQTLQL-IRTPAKALHFFRWVEAKGFTHNEQSYFLMIEIL 137

Query: 124 GKNGRFEQMWNAVRVM--KEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
           G++       N V  +  K  G + L    F S+  SY  AG + E++  F  M   GV 
Sbjct: 138 GRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVS 197

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEAN 237
             VV  NSLLS + ++  +TS A +  + +     V PD  +F IL+ G+     V+E  
Sbjct: 198 PSVVTFNSLLSIVLKR-GRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGF 256

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--KGENCFPTLKFFSNA 295
             F EM  RF+ +P+ V+ Y T +  L R  +V  A   ++ M  K  N  P +  ++  
Sbjct: 257 WFFKEM-SRFKCDPD-VVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTL 314

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN- 354
           +       D   A+ L    MV  G  P+ +TYN + + L + +++ ++++    M+ + 
Sbjct: 315 IRGYCMKQDMAEALSLL-AEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDG 373

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
            + P      T I       + E A  ++  + E  + P  A+ + L+  L   G     
Sbjct: 374 GFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRA 433

Query: 415 RRFAEEMLNRRILIYEVTMHKLKKAF 440
             F +E+  + IL+++V    L  A+
Sbjct: 434 EEFFDELAEKEILLHDVGCKPLVAAY 459



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/364 (18%), Positives = 144/364 (39%), Gaps = 54/364 (14%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYD 164
           RG + +   +N ++  L +  + +++   +  M  DG  +    T  ++  ++C  GK +
Sbjct: 337 RGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLE 396

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIV------DPD 216
           EA   F+ MS   V+ D    + L+ ++C Q     RA EF + +  K+I+       P 
Sbjct: 397 EAFSVFEKMSELRVQPDSATYSVLVRSLC-QRGDFRRAEEFFDELAEKEILLHDVGCKPL 455

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++  + E     G  ++A + F ++++R   +P    +Y+T ++   R    +     
Sbjct: 456 VAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPP---SYKTLILGHCREGTPEAGFDL 512

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
           L +M   +  P  + +   +D L+K  D   A +  + M+      P +  ++ I   L+
Sbjct: 513 LVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLK-SSHLPTTAIFHSILAALV 571

Query: 337 KNKRVHEVEKFFHEMIKN---------------------------EWQPTPL-------- 361
           +    HE       M++                            E Q   L        
Sbjct: 572 EKGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQSRKLLEAQKMLLFSLEKRQS 631

Query: 362 ----NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
                C+T I+ L  A +   A  ++  ++E G+        +L + L   GRL++ +  
Sbjct: 632 VDIDMCSTVISGLCKAHKVSEAFALYYELVEKGMQHRLTCQEDLRISLEAEGRLNEAKFV 691

Query: 418 AEEM 421
           +++M
Sbjct: 692 SKKM 695


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 154/351 (43%), Gaps = 15/351 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG       +N ++D L K G  E+       M   G + ++ T++ + +  C  G+ DE
Sbjct: 66  RGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDE 125

Query: 166 AVMSFDVMSMHGVE--QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI---VDPDGDSF 220
           A      M+    +   +++  NS L  +C+Q + T+ A E +  ++     V PD  +F
Sbjct: 126 ARELIQEMTRKSCDVLPNIITYNSFLDGLCKQ-SMTAEACELMRSLRDGSLRVSPDTVTF 184

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           + L++G  K G ++EA   F +M+    + P +V+ Y   +  L +  +++ A   +  M
Sbjct: 185 STLIDGLCKCGQIDEACSVFDDMIAG-GYVP-NVITYNALVNGLCKADKMERAHAMIESM 242

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA-----FPDSLTYNMIFECL 335
             +   P +  +S  +D   K +    A++L    M   G       PD +T+N++    
Sbjct: 243 VDKGVTPDVITYSVLVDAFCKASRVDEALELLH-GMASRGCTPNVLVPDKVTFNILIAGA 301

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
            K     +    F EM+    QP  +     I  L  A + E A +I + +   G+ P  
Sbjct: 302 CKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNV 361

Query: 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446
            + N L+ GL   GR+ +  +F EEM++   +   +T   L  A    SR+
Sbjct: 362 VTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRT 412



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 141/311 (45%), Gaps = 9/311 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +V+ L K  + E+    +  M + GV   + T++ + D++C A + DEA+     M+
Sbjct: 219 YNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMA 278

Query: 175 MHGVEQDV-----VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
             G   +V     V  N L++  C+  N    +  F   V K + PD  +F  L++G  K
Sbjct: 279 SRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCK 338

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G VE A      M       P +V+ Y   +  L +  +++EA +FL  M    C P  
Sbjct: 339 AGQVEAARDILDLMGNL--GVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDS 396

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             + + +  L + + +  A+QL   +  F G  PD++TYN++ + L K+ +  +      
Sbjct: 397 ITYGSLVYALCRASRTDDALQLVSELKSF-GWDPDTVTYNILVDGLWKSGKTEQAITVLE 455

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM+    QP     A   + L  +      +E+   +L  G+LP   + + +L  +   G
Sbjct: 456 EMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSG 515

Query: 410 RLSDVRRFAEE 420
           +L DV+   +E
Sbjct: 516 KLDDVKAMIKE 526



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 142/327 (43%), Gaps = 13/327 (3%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           R+SP    ++ ++D L K G+ ++  +    M   G V ++ T+ ++ +  C A K + A
Sbjct: 176 RVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERA 235

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK------IVDPDGDSF 220
               + M   GV  DV+  + L+ A C+  ++   ALE L+ +        ++ PD  +F
Sbjct: 236 HAMIESMVDKGVTPDVITYSVLVDAFCKA-SRVDEALELLHGMASRGCTPNVLVPDKVTF 294

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            IL+ G  K GN E+A+  F EMV +    P+ V+ +   +  L +  QV+ A   L +M
Sbjct: 295 NILIAGACKAGNFEQASALFEEMVAK-NLQPD-VMTFGALIDGLCKAGQVEAARDILDLM 352

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                 P +  ++  +  L K      A Q  +  MV  G  PDS+TY  +   L +  R
Sbjct: 353 GNLGVPPNVVTYNALVHGLCKSGRIEEACQFLE-EMVSSGCVPDSITYGSLVYALCRASR 411

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
             +  +   E+    W P  +     +  L  + + E AI +   ++  G  P   +   
Sbjct: 412 TDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAA 471

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRIL 427
              GL   G L+        +L + +L
Sbjct: 472 CFSGLHRSGNLAGTMELLRVVLAKGML 498



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 150/351 (42%), Gaps = 18/351 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRV-MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +N+++  L + G   +     R  M  DGV  ++ T+ +I +  C +      +  F+ +
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 174 SMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
              G   DVV  N+L+ ++C+  + + +R L      +  V P+  ++++L+ G  K G 
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCV-PNVVTYSVLINGLCKVGR 122

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN--CFPTLK 290
           ++EA +   EM  +      +++ Y +FL  L +     EA + +R ++  +    P   
Sbjct: 123 IDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTV 182

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            FS  +D L K      A  ++D  M+  G  P+ +TYN +   L K  ++         
Sbjct: 183 TFSTLIDGLCKCGQIDEACSVFDD-MIAGGYVPNVITYNALVNGLCKADKMERAHAMIES 241

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-----ILPLEASANELLVGL 405
           M+     P  +  +  +     A   + A+E+ + +   G     ++P + + N L+ G 
Sbjct: 242 MVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGA 301

Query: 406 RNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDIFD 452
              G         EEM+ +     ++ +   +  L KA   +  + RDI D
Sbjct: 302 CKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKA--GQVEAARDILD 350


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 179/386 (46%), Gaps = 15/386 (3%)

Query: 65  SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA-GRGQRLSPYAWNLMVDVL 123
           S +++S+LA      +   V + LQL   +P+ A+ FFRW   +G   +  ++ LM+++L
Sbjct: 79  SHELQSSLAELAPSLSKTTVLQTLQL-IRTPAKALHFFRWVEAKGFTHNEQSYFLMIEIL 137

Query: 124 GKNGRFEQMWNAVRVM--KEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
           G++       N V  +  K  G + L    F S+  SY  AG + E++  F  M   GV 
Sbjct: 138 GRSRNLNAARNFVFSIEKKSGGAVKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVS 197

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEAN 237
             VV  NSLLS + ++  +TS A +  + +     V PD  +F IL+ G+     V+E  
Sbjct: 198 PSVVTFNSLLSIVLKR-GRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGF 256

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--KGENCFPTLKFFSNA 295
             F EM  RF+ +P+ V+ Y T +  L R  +V  A   ++ M  K  N  P +  ++  
Sbjct: 257 WFFKEM-SRFKCDPD-VVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTL 314

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN- 354
           +       D   A+ L    MV  G  P+ +TYN + + L + +++ ++++    M+ + 
Sbjct: 315 IRGYCMKQDMAEALSLL-AEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDG 373

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
            + P      T I       + E A  ++  + E  + P  A+ + L+  L   G     
Sbjct: 374 GFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRA 433

Query: 415 RRFAEEMLNRRILIYEVTMHKLKKAF 440
             F +E+  + IL+++V    L  A+
Sbjct: 434 EEFFDELAEKEILLHDVGCKPLVAAY 459



 Score = 45.1 bits (105), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 72/391 (18%), Positives = 153/391 (39%), Gaps = 80/391 (20%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYD 164
           RG + +   +N ++  L +  + +++   +  M  DG  +    T  ++  ++C  GK +
Sbjct: 337 RGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLE 396

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIV------DPD 216
           EA   F+ MS   V+ D    + L+ ++C Q     RA EF + +  K+I+       P 
Sbjct: 397 EAFSVFEKMSELRVQPDSATYSVLVRSLC-QRGDFRRAEEFFDELAEKEILLHDVGCKPL 455

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF---------------- 260
             ++  + E     G  ++A + F ++++R   +P    +Y+T                 
Sbjct: 456 VAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPP---SYKTLILGHCREGTPEAGFDL 512

Query: 261 LITLIR----------GKQVDEALK---------FLRVMKGENCFPTLKFFSNALDILVK 301
           L+ ++R          G  +D  LK          L  M   +  PT   F + L  LV+
Sbjct: 513 LVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALVE 572

Query: 302 LNDSTHAVQLWDIMM-----------------VFHGAFPDS--LTYNMIFE--------- 333
              +  +  L  +M+                 ++     D   +T  +++E         
Sbjct: 573 KGCAHESASLVKLMLERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENGYLVKMEE 632

Query: 334 ---CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
               L +++++ E +K     ++         C+T I+ L  A +   A  ++  ++E G
Sbjct: 633 LVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELVEKG 692

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           +        +L + L   GRL++ +  +++M
Sbjct: 693 MQHRLTCQEDLRISLEAEGRLNEAKFVSKKM 723


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 162/334 (48%), Gaps = 16/334 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+++      G  E        M+ +G L ++ T+ +I D+YC   K  EA     +
Sbjct: 204 YTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRL 263

Query: 173 MSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           M++ G+  ++++ N +++ +CR  Q  +TS  LE +++ + +  PD  +F  L+ G+   
Sbjct: 264 MALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV--PDRVTFNTLINGYCNV 321

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN  +A     EMV+    +P +V+ Y T + ++ +   ++ A++FL  M+     P  +
Sbjct: 322 GNFHQALVLHAEMVKN-GLSP-NVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGR 379

Query: 291 FFSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIF--ECLIKNKRVHEVEK 346
            ++  +D     +      Q + IM  MV +G  P  +TYN +    C++   R+ +   
Sbjct: 380 TYTTLID---GFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCIL--GRMEDASG 434

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
              EMI+  + P  ++ +T I+      E E A ++   ++  GI P  A+ + L+ GL 
Sbjct: 435 LLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLC 494

Query: 407 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
              RL +V    +EML+  +   EVT   L  A+
Sbjct: 495 KQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAY 528



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 160/324 (49%), Gaps = 6/324 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N++++ L + G+ ++    +  M K   V    TF ++ + YC  G + +A++    M
Sbjct: 275 SYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEM 334

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
             +G+  +VV   +L++++C+  N  +RA+EFL++++ + + P+G ++  L++G+ ++G 
Sbjct: 335 VKNGLSPNVVTYTTLINSMCKAGN-LNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGF 393

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A +   EMVE   + P  ++ Y   +       ++++A   L+ M      P +  +
Sbjct: 394 LKQAYQIMKEMVEN-GFTPT-IITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSY 451

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           S  +    +  +   A QL  + MV  G  PD  TY+ + + L K +R+ EV   F EM+
Sbjct: 452 STIISGFCRNQELEKAFQL-KVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEML 510

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P  +   + I       + + A+ + + +++ G  P   + N L+ G     R  
Sbjct: 511 SLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTK 570

Query: 413 DVRRFAEEMLNRRILIYEVTMHKL 436
           + +R   ++L    +  E+T + L
Sbjct: 571 EAKRLLLKLLYEESVPNEITYNTL 594



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 117/261 (44%), Gaps = 6/261 (2%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE--FLNRVKKIVDPDGDSFA 221
           ++A+   ++   +G    V++ N++L A+ R + Q+ +  E  F   V+  V P+  ++ 
Sbjct: 149 NKALSIVNLAKSYGFMPGVLSYNAILDAVIRTK-QSVKIAEGIFKEMVESGVSPNVYTYN 207

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           IL+ G+   GN+E     FGEM ER    P +V+ Y T +    + +++ EA K LR+M 
Sbjct: 208 ILIRGFCTAGNLEMGLXFFGEM-ERNGCLP-NVVTYNTIIDAYCKLRKIGEAFKLLRLMA 265

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            +   P L  ++  ++ L +        ++ +  M      PD +T+N +          
Sbjct: 266 LKGLNPNLISYNVVINGLCREGQMKETSEILE-EMSKRRYVPDRVTFNTLINGYCNVGNF 324

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
           H+      EM+KN   P  +   T I  +  A     A+E  + + + G+ P   +   L
Sbjct: 325 HQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTL 384

Query: 402 LVGLRNLGRLSDVRRFAEEML 422
           + G    G L    +  +EM+
Sbjct: 385 IDGFSQQGFLKQAYQIMKEMV 405


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 151/323 (46%), Gaps = 6/323 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG       +N++V+ + K GR ++    +  M   G   ++ T   I  S C  G++ +
Sbjct: 268 RGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMD 327

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A      M   G    VV  N L++ +CR+     RA++ L ++ +    P+  S+  LL
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRK-GLLGRAIDILEKMPQHGCQPNSLSYNPLL 386

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ KE  ++ A +    MV R  + P+ ++ Y T L  L +  +V++A++ L  +  + 
Sbjct: 387 HGFCKEKKMDRAIEYLERMVSRGCY-PD-IVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C P L  ++  +D L K   +  A++L D M       PD++TY+ +   L +  +V E 
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRA-KDLKPDTITYSSLVGGLSREGKVDEA 503

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            KFFHE  +   +P  +   + +  L  + + + AI+   +++  G  P E S   L+ G
Sbjct: 504 IKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEG 563

Query: 405 LRNLGRLSDVRRFAEEMLNRRIL 427
           L   G   +      E+ N+ ++
Sbjct: 564 LAYEGMAKEALELLNELCNKGLM 586



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 153/355 (43%), Gaps = 42/355 (11%)

Query: 127 GRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G+  +    + +++  G +  + T+  +   YC AG+ + A+   D MS   V  DVV  
Sbjct: 151 GKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTY 207

Query: 186 NSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           N++L ++C    +  +A+E L+R +++   PD  ++ IL+E   ++  V  A K   EM 
Sbjct: 208 NTILRSLC-DSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMR 266

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL--------------- 289
           +R    P+ V+ Y   +  + +  ++DEA+KFL  M    C P +               
Sbjct: 267 DR-GCTPD-VVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324

Query: 290 -------------KFFSNAL---DILVK-LNDSTHAVQLWDIM--MVFHGAFPDSLTYNM 330
                        K FS ++   +IL+  L       +  DI+  M  HG  P+SL+YN 
Sbjct: 325 WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNP 384

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +     K K++    ++   M+     P  +   T +T L    + E A+EI N +   G
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             P+  + N ++ GL   G+     +  +EM  + +    +T   L      E +
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 134/308 (43%), Gaps = 6/308 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++  L  +G+ +Q    + R+++ D    + T+  + ++ C       A+   D M
Sbjct: 206 TYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEM 265

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G   DVV  N L++ IC+ E +   A++FLN +      P+  +  I+L      G 
Sbjct: 266 RDRGCTPDVVTYNVLVNGICK-EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             +A K   +M+ R  ++P  V+ +   +  L R   +  A+  L  M    C P    +
Sbjct: 325 WMDAEKLLADML-RKGFSPS-VVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSY 382

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  L    K      A++  +  MV  G +PD +TYN +   L K+ +V +  +  +++ 
Sbjct: 383 NPLLHGFCKEKKMDRAIEYLE-RMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLS 441

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P  +   T I  L  A +   AI++ + +    + P   + + L+ GL   G++ 
Sbjct: 442 SKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVD 501

Query: 413 DVRRFAEE 420
           +  +F  E
Sbjct: 502 EAIKFFHE 509



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 121/274 (44%), Gaps = 6/274 (2%)

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            ++   +C  GK  +A    +++   G   DV+  N ++S  C+   + + AL  L+R+ 
Sbjct: 141 TTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKA-GEINNALSVLDRMS 199

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
             V PD  ++  +L      G +++A +    M++R +  P+ V+ Y   +    R   V
Sbjct: 200 --VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR-DCYPD-VITYTILIEATCRDSGV 255

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
             A+K L  M+   C P +  ++  ++ + K      A++  +  M   G  P+ +T+N+
Sbjct: 256 GHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLND-MPSSGCQPNVITHNI 314

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           I   +    R  + EK   +M++  + P+ +     I  L        AI+I   + ++G
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             P   S N LL G     ++     + E M++R
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSR 408


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 156/368 (42%), Gaps = 50/368 (13%)

Query: 115 AWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           ++N+M++ L K G+F++   +W+  R+ K +    L T++++    CG+G  D A   + 
Sbjct: 232 SYNVMINGLCKCGKFDESFEIWH--RMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYK 289

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M+ +GV  DVV  N++L+   R   +    LE    ++K       S+ IL+ G  +  
Sbjct: 290 EMAENGVSPDVVVYNTMLNGYLRA-GRIEECLELWKVMEKEGCRTVVSYNILIRGLFENA 348

Query: 232 NVEEA---------------NKTFGEMVERFEWNPE------------------HVLAYE 258
            V+EA               + T+G +V     N                       AY 
Sbjct: 349 KVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYS 408

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--- 315
           + +  L R  ++DE    L  M    C P   +  NA+     +N    A +L D +   
Sbjct: 409 SMINGLCREGRLDEVAGVLDQMTKHGCKPN-PYVCNAV-----INGFVRASKLEDALRFF 462

Query: 316 --MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
             MV  G FP  +TYN +   L K +R  E      EM++  W+P  +  +  +  L   
Sbjct: 463 GNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQG 522

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 433
            + ++A+ +W   LE G  P     N ++ GL + G++ D  +   EM  R  +   VT 
Sbjct: 523 KKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTH 582

Query: 434 HKLKKAFY 441
           + L + FY
Sbjct: 583 NTLMEGFY 590



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/338 (21%), Positives = 142/338 (42%), Gaps = 14/338 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRF---EQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           RG       +N+++D   K G      ++W   R++K   V  ++P++  + +  C  GK
Sbjct: 188 RGVTPDVACYNILIDGFFKKGDILNASEIWE--RLLKGPSVYPNIPSYNVMINGLCKCGK 245

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           +DE+   +  M  +   QD+   ++L+  +C   N       +    +  V PD   +  
Sbjct: 246 FDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNT 305

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +L G+ + G +EE  + +  M +        V++Y   +  L    +VDEA+    ++  
Sbjct: 306 MLNGYLRAGRIEECLELWKVMEKE---GCRTVVSYNILIRGLFENAKVDEAISIWELLPE 362

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           ++C      +   +  L K      A+ + +      G   D+  Y+ +   L +  R+ 
Sbjct: 363 KDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDL-DTFAYSSMINGLCREGRLD 421

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           EV     +M K+  +P P  C   I   + A + E A+  +  ++  G  P   + N L+
Sbjct: 422 EVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLI 481

Query: 403 VGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKL 436
            GL    R S+     +EML +     ++ Y + M+ L
Sbjct: 482 NGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGL 519



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 141/341 (41%), Gaps = 45/341 (13%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFA--SIFDSYCGAGKYDEAVMSF 170
            + ++V  L KNG   +   A+ +++E  +G   L TFA  S+ +  C  G+ DE     
Sbjct: 371 TYGVLVHGLCKNGYLNK---ALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVL 427

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           D M+ HG + +    N++++   R          F N V K   P   ++  L+ G  K 
Sbjct: 428 DQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKA 487

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
               EA     EM+++  W P +++ Y   +  L +GK++D AL                
Sbjct: 488 ERFSEAYALVKEMLQK-GWKP-NMITYSLLMNGLCQGKKLDMALNL-------------- 531

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +  AL+                      G  PD   +N+I   L  + +V +  + + E
Sbjct: 532 -WCQALE---------------------KGFKPDVKMHNIIIHGLCSSGKVEDALQLYSE 569

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M +    P  +   T +       + E A +IW++IL+ G+ P   S N  L GL +  R
Sbjct: 570 MKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSCHR 629

Query: 411 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIF 451
           +SD   F  + ++R +L   +T + L + +      M  +F
Sbjct: 630 ISDAVGFLNDAVDRGVLPTAITWNILVQGYLALKGYMEPVF 670



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 121/283 (42%), Gaps = 18/283 (6%)

Query: 164 DEAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           D+A+  F  M  + G +  + + NSLL+A+            FL      + P+  ++ I
Sbjct: 70  DQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNI 129

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEW------NPEHVLAYETFLITLIRGKQVDEALKF 276
           L++       +    K F +  E   W      +P+ V +Y T + +L +   + +ALK 
Sbjct: 130 LIK-------ISCRKKQFDKAKELLNWMWGQGFSPD-VFSYGTLINSLAKNGYMSDALKL 181

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
              M      P +  ++  +D   K  D  +A ++W+ ++     +P+  +YN++   L 
Sbjct: 182 FDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLC 241

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           K  +  E  + +H M KNE        +T I  L  +   + A  ++  + ENG+ P   
Sbjct: 242 KCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVV 301

Query: 397 SANELLVGLRNLGRLS---DVRRFAEEMLNRRILIYEVTMHKL 436
             N +L G    GR+    ++ +  E+   R ++ Y + +  L
Sbjct: 302 VYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGL 344



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 86/403 (21%), Positives = 170/403 (42%), Gaps = 30/403 (7%)

Query: 46  APYISSSARII----CEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDS------- 94
           AP   S  R+I     E   H++    +S     G   TP + H +L+  +D        
Sbjct: 4   APKSLSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHAY 63

Query: 95  -----PSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-S 146
                P  A+D F+      G +    ++N +++ L ++ ++++  +     +  G+  +
Sbjct: 64  AKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPN 123

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L T+  +    C   ++D+A    + M   G   DV +  +L++++ +     S AL+  
Sbjct: 124 LQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKN-GYMSDALKLF 182

Query: 207 NRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE---HVLAYETFLI 262
           + + ++ V PD   + IL++G+ K+G++  A+    E+ ER    P    ++ +Y   + 
Sbjct: 183 DEMPERGVTPDVACYNILIDGFFKKGDILNAS----EIWERLLKGPSVYPNIPSYNVMIN 238

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
            L +  + DE+ +    MK       L  +S  +  L    +   A +++   M  +G  
Sbjct: 239 GLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYK-EMAENGVS 297

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           PD + YN +    ++  R+ E  + +  M K E   T ++    I  L +  + + AI I
Sbjct: 298 PDVVVYNTMLNGYLRAGRIEECLELWKVMEK-EGCRTVVSYNILIRGLFENAKVDEAISI 356

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
           W  + E        +   L+ GL   G L+      EE  N R
Sbjct: 357 WELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGR 399


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 140/301 (46%), Gaps = 8/301 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N +V+ L K G  +     + VM ++G    + T+ S+    C  G+  EAV   D 
Sbjct: 296 YTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQ 355

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIVDPDGDSFAILLEGWEKE 230
           M       + V  N+L+S +C+ ENQ   A E L RV   K + PD  +F  L++G    
Sbjct: 356 MITRDCSPNTVTYNTLISTLCK-ENQVEEATE-LARVLTSKGILPDVCTFNSLIQGLCLT 413

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            N   A + F EM  +    P+    Y   + +L    ++DEAL  L+ M+   C  ++ 
Sbjct: 414 RNHRVAMELFEEMRSK-GCEPDE-FTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVI 471

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            ++  +D   K N +  A +++D M V HG   +S+TYN + + L K++RV +  +   +
Sbjct: 472 TYNTLIDGFCKANKTREAEEIFDEMEV-HGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQ 530

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           MI    +P      + +T      + + A +I   +  NG  P   +   L+ GL   GR
Sbjct: 531 MIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGR 590

Query: 411 L 411
           +
Sbjct: 591 V 591



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 150/331 (45%), Gaps = 11/331 (3%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVL 123
           ++   L   GI+P     + ++Q   L+ +   +   F     +G     + +N+++D L
Sbjct: 386 ELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSL 445

Query: 124 GKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
              G+ ++  N ++ M+  G   S+ T+ ++ D +C A K  EA   FD M +HGV ++ 
Sbjct: 446 CSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNS 505

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
           V  N+L+  +C+       A      + +   PD  ++  LL  + + G++++A      
Sbjct: 506 VTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQA 565

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV--MKGENCFPTLKFFSNALDILV 300
           M       P+ ++ Y T +  L +  +V+ A K LR   MKG N  P    ++  +  L 
Sbjct: 566 MTSN-GCEPD-IVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTP--HAYNPVIQGLF 621

Query: 301 KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR-VHEVEKFFHEMIKNEWQPT 359
           +   +T A+ L+  M+  + A PD+++Y ++F  L      + E   F  E+++  + P 
Sbjct: 622 RKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPE 681

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENG 390
             +       LL     E  +++ N +++  
Sbjct: 682 FSSLYMLAEGLLTLSMEETLVKLVNMVMQKA 712



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 148/351 (42%), Gaps = 45/351 (12%)

Query: 96  SSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFAS 152
           S+A+  F  A +    SP    +  ++  LG++G F+ M   +  MK     +   TF  
Sbjct: 64  SAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLI 123

Query: 153 IFDSYCGAGKYDEAV------------------------------------MSFDVMSMH 176
           + +SY      DE +                                    +S   MS+ 
Sbjct: 124 LIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVW 183

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G++ DV   N L+ A+CR        L   +     + PD  +F  +++G+ +EG+++ A
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGA 243

Query: 237 NKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PTLKFFSN 294
            +   +MVE    W+    ++    +    +  +V++AL F++ M  ++ F P    F+ 
Sbjct: 244 LRIREQMVEFGCSWSN---VSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNT 300

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            ++ L K     HA+++ D+M+   G  PD  TYN +   L K   V E  +   +MI  
Sbjct: 301 LVNGLCKAGHVKHAIEIMDVMLQ-EGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITR 359

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           +  P  +   T I+ L   ++ E A E+   +   GILP   + N L+ GL
Sbjct: 360 DCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 134/317 (42%), Gaps = 40/317 (12%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVL-SLPTFASIFDSYCGAGKYDE 165
           G   S  + N++V    K GR E   N ++ M  +DG      TF ++ +  C AG    
Sbjct: 254 GCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKH 313

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+   DVM   G + DV   NS++S +C                                
Sbjct: 314 AIEIMDVMLQEGYDPDVYTYNSVISGLC-------------------------------- 341

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K G V+EA +   +M+ R + +P  V  Y T + TL +  QV+EA +  RV+  +  
Sbjct: 342 ---KLGEVKEAVEVLDQMITR-DCSPNTV-TYNTLISTLCKENQVEEATELARVLTSKGI 396

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P +  F++ +  L    +   A++L++ M    G  PD  TYNM+ + L    ++ E  
Sbjct: 397 LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRS-KGCEPDEFTYNMLIDSLCSKGKLDEAL 455

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
               +M  +    + +   T I     A++   A EI++ +  +G+     + N L+ GL
Sbjct: 456 NMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGL 515

Query: 406 RNLGRLSDVRRFAEEML 422
               R+ D  +  ++M+
Sbjct: 516 CKSRRVEDAAQLMDQMI 532



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 123/303 (40%), Gaps = 17/303 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++  L K  + E+     RV+   G+L  + TF S+    C    +  A+  F+ M
Sbjct: 367 TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEM 426

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV------KKIVDPDGDSFAILLEGW 227
              G E D    N L+ ++C +  +   AL  L ++      + ++     ++  L++G+
Sbjct: 427 RSKGCEPDEFTYNMLIDSLCSK-GKLDEALNMLKQMELSGCARSVI-----TYNTLIDGF 480

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            K     EA + F EM         + + Y T +  L + ++V++A + +  M  E   P
Sbjct: 481 CKANKTREAEEIFDEM--EVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKP 538

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
               +++ L    +  D   A  +    M  +G  PD +TY  +   L K  RV    K 
Sbjct: 539 DKYTYNSLLTHFCRGGDIKKAADIVQ-AMTSNGCEPDIVTYGTLISGLCKAGRVEVASKL 597

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV-GLR 406
              +       TP      I  L    +   AI ++  +LE    P +A +  ++  GL 
Sbjct: 598 LRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLC 657

Query: 407 NLG 409
           N G
Sbjct: 658 NGG 660



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 87/238 (36%), Gaps = 38/238 (15%)

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL+    + +   A + F    ++  ++PE  L YE  L+ L R    D+  K L  MK 
Sbjct: 53  LLDSLRSQPDDSAALRLFNLASKKPNFSPEPAL-YEEILLRLGRSGSFDDMKKILEDMKS 111

Query: 283 ENC------------------------------------FPTLKFFSNALDILVKLNDST 306
             C                                     P   F++  L++LV  N S 
Sbjct: 112 SRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGN-SL 170

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
             V++    M   G  PD  T+N++ + L +  ++        +M      P      T 
Sbjct: 171 KLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTV 230

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           +   ++  + + A+ I   ++E G      S N ++ G    GR+ D   F +EM N+
Sbjct: 231 MQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQ 288


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 151/323 (46%), Gaps = 6/323 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +     +N++++ + K GR ++    +  M   G   ++ T   I  S C  G++ +
Sbjct: 111 KGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMD 170

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A      M   G    VV  N L++ +CRQ     RA++ L ++      P+  S+  LL
Sbjct: 171 AEKLLSDMLRKGCSPSVVTFNILINFLCRQ-GLLGRAIDILEKMPMHGCTPNSLSYNPLL 229

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ KE  ++ A +    MV R  + P+ ++ Y T L  L +  +VD A++ L  +  + 
Sbjct: 230 HGFCKEKKMDRAIEYLDIMVSRGCY-PD-IVTYNTLLTALCKDGKVDVAVEILNQLSSKG 287

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C P L  ++  +D L K+  +  A++L D M    G  PD +TY+ +   L +  +V E 
Sbjct: 288 CSPVLITYNTVIDGLSKVGKTERAIKLLDEMRR-KGLKPDIITYSSLVSGLSREGKVDEA 346

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            KFFH++     +P  +   + +  L  + + + AI+   Y++     P EA+   L+ G
Sbjct: 347 IKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEG 406

Query: 405 LRNLGRLSDVRRFAEEMLNRRIL 427
           +   G   +      E+ +R ++
Sbjct: 407 IAYEGLAKEALDLLNELCSRGLV 429



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 139/324 (42%), Gaps = 10/324 (3%)

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
             SL  F+    + C      +A+   D M   G + DVV  N L++ IC+ E +   A+
Sbjct: 79  CFSLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICK-EGRLDEAI 137

Query: 204 EFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           +FLN +      P+  +  I+L      G   +A K   +M+ R   +P  V+ +   + 
Sbjct: 138 KFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDML-RKGCSPS-VVTFNILIN 195

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
            L R   +  A+  L  M    C P    ++  L    K      A++  DIM V  G +
Sbjct: 196 FLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM-VSRGCY 254

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           PD +TYN +   L K+ +V    +  +++      P  +   T I  L    + E AI++
Sbjct: 255 PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKL 314

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKK 438
            + +   G+ P   + + L+ GL   G++ +  +F  ++    I    + Y   M  L K
Sbjct: 315 LDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCK 374

Query: 439 AFYNESRSMRDIFDSLERRCKTSQ 462
           +   + R++  +   + +RCK ++
Sbjct: 375 SRQTD-RAIDFLAYMISKRCKPTE 397


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 169/364 (46%), Gaps = 25/364 (6%)

Query: 98  AVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFD 155
           A  F R  G +G   +   +N++++ L ++GR ++    +  M   G V    T+ ++ +
Sbjct: 37  AFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVN 96

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVD 214
            YC  G + +A++    M  +G+  +VV   SL++++C+  N  +RA+EF +++  + + 
Sbjct: 97  GYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGN-LNRAMEFFDQMHVRGLC 155

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  ++  ++ G+ ++G ++EA +   EM  R  + P  ++ Y   +       +++EA+
Sbjct: 156 PNERTYTTIINGFAQQGLLDEAYRVLNEMT-RSGFIPS-IVTYNALINGHCVLGRMEEAI 213

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
             L+ M G+   P +  +S  +    +  +   A Q+  + M+     PD++TY+ + + 
Sbjct: 214 GLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQM-KVEMIGKSVLPDAVTYSSLIQG 272

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L + +R+ E    F EM+  +  P      T I       +   A+ + + +++ G LP 
Sbjct: 273 LCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPD 332

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
             + N L+ GL    R  + RR                   L K FY++S      +++L
Sbjct: 333 AVTYNVLINGLNKQARSKEARRL------------------LLKLFYDDSIPSAVTYNTL 374

Query: 455 ERRC 458
              C
Sbjct: 375 IENC 378



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 142/309 (45%), Gaps = 8/309 (2%)

Query: 139 MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--Q 195
           M+ +G L ++ T+ ++ D YC   + DEA      M + G+E +++  N +++ +CR  +
Sbjct: 9   MERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGR 68

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
             +TS  L  ++R   +  PD  ++  L+ G+ KEGN  +A     EMV R   +P +V+
Sbjct: 69  LKETSEVLVEMSRKGYV--PDEVTYNTLVNGYCKEGNFHQALVLHAEMV-RNGLSP-NVV 124

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y + + ++ +   ++ A++F   M      P  + ++  ++   +      A ++ +  
Sbjct: 125 TYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLN-E 183

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           M   G  P  +TYN +        R+ E      +M+     P  ++ +T I+      E
Sbjct: 184 MTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQE 243

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 435
            + A ++   ++   +LP   + + L+ GL    RL++     +EML  ++   E T   
Sbjct: 244 LDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTT 303

Query: 436 LKKAFYNES 444
           L  A+  E 
Sbjct: 304 LINAYCKEG 312



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 69/172 (40%), Gaps = 1/172 (0%)

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
            L+F + M+   C P +  ++  +D   KL  +  A       M   G  P+ +T+NMI 
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLR-SMGLKGLEPNLITFNMII 60

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
             L ++ R+ E  +   EM +  + P  +   T +           A+ +   ++ NG+ 
Sbjct: 61  NGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLS 120

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           P   +   L+  +   G L+    F ++M  R +   E T   +   F  + 
Sbjct: 121 PNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQG 172


>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
 gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 453

 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 140/318 (44%), Gaps = 8/318 (2%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY---AWNLMVDVLGKNGRFEQMWNAV 136
           TP+LV+ VL+  ++    A+ FF +     R   +   +++L +D+  +      +W+ +
Sbjct: 55  TPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLI 114

Query: 137 RVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
             M+   +   P TFA + + Y  AGK D+AV  F  M  HG  QD+ + N++L  +C+ 
Sbjct: 115 HRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKS 174

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           + +  +A E    ++     D  ++ ++L GW       +A +   EMVER   NP ++ 
Sbjct: 175 K-RVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVER-GINP-NLT 231

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y T L    R  Q+  A +F   MK  +C   +  ++  +       +   A  ++D  
Sbjct: 232 TYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFD-E 290

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           M+  G  P   TYN + + L K   V      F EM++  ++P        I  L  A E
Sbjct: 291 MIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGE 350

Query: 376 PEIAIEIWNYILENGILP 393
                E+   +   G  P
Sbjct: 351 FSRGEELMQRMENEGCEP 368



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 105/221 (47%), Gaps = 5/221 (2%)

Query: 205 FLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            ++R++ + + P   +FAI+ E +   G  ++A K F  M E   +  + + ++ T L  
Sbjct: 113 LIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCF--QDLASFNTILDV 170

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L + K+V++A +  R ++G     T+ + +  L+    +  +  A+++    MV  G  P
Sbjct: 171 LCKSKRVEKAYELFRALRGRFSVDTVTY-NVILNGWCLIKRTPKALEVLK-EMVERGINP 228

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           +  TYN + +   +  ++    +FF EM K + +   +   T +     A E + A  ++
Sbjct: 229 NLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVF 288

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           + ++  G+LP  A+ N ++  L     + +     EEM+ R
Sbjct: 289 DEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRR 329



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 7/190 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDE 165
           RG   +   +N M+    + G+    W     MK+ D  + + T+ ++   +  AG+   
Sbjct: 224 RGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKR 283

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   FD M   GV   V   N+++  +C+++N  +  + F   V++  +P+  ++ +L+ 
Sbjct: 284 ARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIR 343

Query: 226 GWEKEGNVEEANKTFGEMVERF--EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           G    G          E+++R   E    +   Y   +       +V++AL     M   
Sbjct: 344 GLFHAGEFSRGE----ELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSG 399

Query: 284 NCFPTLKFFS 293
           +C P L  ++
Sbjct: 400 DCLPNLDTYN 409



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 8/174 (4%)

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P+ K F+   +          AV+L+ + M  HG F D  ++N I + L K+KRV +  +
Sbjct: 124 PSPKTFAIVAERYASAGKPDKAVKLF-LNMHEHGCFQDLASFNTILDVLCKSKRVEKAYE 182

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            F  + +  +    +     +           A+E+   ++E GI P   + N +L G  
Sbjct: 183 LFRAL-RGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFF 241

Query: 407 NLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
             G++     F  EM  R     ++ Y   +H    A   E +  R++FD + R
Sbjct: 242 RAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVA--GEIKRARNVFDEMIR 293


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 140/318 (44%), Gaps = 8/318 (2%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY---AWNLMVDVLGKNGRFEQMWNAV 136
           TP+LV+ VL+  ++    A+ FF +     R   +   +++L +D+  +      +W+ +
Sbjct: 55  TPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLI 114

Query: 137 RVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
             M+   +   P TFA + + Y  AGK D+AV  F  M  HG  QD+ + N++L  +C+ 
Sbjct: 115 HRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKS 174

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           + +  +A E    ++     D  ++ ++L GW       +A +   EMVER   NP ++ 
Sbjct: 175 K-RVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVER-GINP-NLT 231

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y T L    R  Q+  A +F   MK  +C   +  ++  +       +   A  ++D  
Sbjct: 232 TYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFD-E 290

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           M+  G  P   TYN + + L K   V      F EM++  ++P        I  L  A E
Sbjct: 291 MIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGE 350

Query: 376 PEIAIEIWNYILENGILP 393
                E+   +   G  P
Sbjct: 351 FSRGEELMQRMENEGCEP 368



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 96/235 (40%), Gaps = 9/235 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDE 165
           RG   +   +N M+    + G+    W     MK+ D  + + T+ ++   +  AG+   
Sbjct: 224 RGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKR 283

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   FD M   GV   V   N+++  +C+++N  +  + F   V++  +P+  ++ +L+ 
Sbjct: 284 ARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIR 343

Query: 226 GWEKEGNVEEANKTFGEMVERF--EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           G    G          E+++R   E    +   Y   +       +V++AL     M   
Sbjct: 344 GLFHAGEFSRGE----ELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSG 399

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLI 336
           +C P L  ++  +  +     S   V    ++  MV  G  P   T+N +   L+
Sbjct: 400 DCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLL 454



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 105/221 (47%), Gaps = 5/221 (2%)

Query: 205 FLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            ++R++ + + P   +FAI+ E +   G  ++A K F  M E   +  + + ++ T L  
Sbjct: 113 LIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCF--QDLASFNTILDV 170

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L + K+V++A +  R ++G     T+ + +  L+    +  +  A+++    MV  G  P
Sbjct: 171 LCKSKRVEKAYELFRALRGRFSVDTVTY-NVILNGWCLIKRTPKALEVLK-EMVERGINP 228

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           +  TYN + +   +  ++    +FF EM K + +   +   T +     A E + A  ++
Sbjct: 229 NLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVF 288

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           + ++  G+LP  A+ N ++  L     + +     EEM+ R
Sbjct: 289 DEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRR 329



 Score = 45.4 bits (106), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 8/174 (4%)

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P+ K F+   +          AV+L+ + M  HG F D  ++N I + L K+KRV +  +
Sbjct: 124 PSPKTFAIVAERYASAGKPDKAVKLF-LNMHEHGCFQDLASFNTILDVLCKSKRVEKAYE 182

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            F  + +  +    +     +           A+E+   ++E GI P   + N +L G  
Sbjct: 183 LFRAL-RGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFF 241

Query: 407 NLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
             G++     F  EM  R     ++ Y   +H    A   E +  R++FD + R
Sbjct: 242 RAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVA--GEIKRARNVFDEMIR 293


>gi|356546852|ref|XP_003541836.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Glycine max]
          Length = 481

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 162/367 (44%), Gaps = 12/367 (3%)

Query: 28  TSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEV 87
           T  N  + + PRF     A +I +    + +      ++ +  AL   G     DLV +V
Sbjct: 18  TFSNNVKTSTPRFVHSCPATFIQN----LLKFRRDKPTEQLYRALDQCGFDLNHDLVLDV 73

Query: 88  LQLSYDSPSSAVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDG 143
           L+        A  FF WA +   G + S    N +VD+LGK  RF+++   +  M K + 
Sbjct: 74  LRRHRSDWRPAHVFFNWASKTTTGYQPSSDVCNEIVDILGKMQRFQELHQVLDEMSKREE 133

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           +L    FA++   + GA K DEA+  F      G+E +  A  +LL  +CR ++      
Sbjct: 134 LLDEAVFATLVRRFVGAHKVDEAIQLFYRRKEFGLELNSEAFRTLLMWLCRYKHVEDAEA 193

Query: 204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            F N VKK +  D   + ++L GW   GN  EA + + ++V      P+ +  Y TF+  
Sbjct: 194 LFHNSVKKGLRADIKMWNVILNGWCVLGNSHEAKRVWRDIVAS-PCKPD-IFTYATFIKA 251

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L +  ++  ALK  R M  +   P +   +  +D L        A++++   M   G  P
Sbjct: 252 LTKKGKLGTALKLFRGMWDKGGKPDVVICNCIIDALCFKKRIPEALEIF-CDMSERGCEP 310

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           +  TYN + + + K +R+ +V +   EM + +    P N  T   +L    EP     + 
Sbjct: 311 NVATYNSLIKYMCKIQRMKKVYELVDEMERKKGSCLP-NAVTYCYLLKSLKEPGEVCRVL 369

Query: 384 NYILENG 390
             +  NG
Sbjct: 370 ERMERNG 376



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 113/259 (43%), Gaps = 17/259 (6%)

Query: 107 RGQRLSPYAWNLMVD---VLGKNGRFEQMWNAVRV--MKEDGVLSLPTFASIFDSYCGAG 161
           +G R     WN++++   VLG +   +++W  +     K D    + T+A+   +    G
Sbjct: 201 KGLRADIKMWNVILNGWCVLGNSHEAKRVWRDIVASPCKPD----IFTYATFIKALTKKG 256

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSF 220
           K   A+  F  M   G + DVV  N ++ A+C ++ +   ALE F +  ++  +P+  ++
Sbjct: 257 KLGTALKLFRGMWDKGGKPDVVICNCIIDALCFKK-RIPEALEIFCDMSERGCEPNVATY 315

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG-KQVDEALKFLRV 279
             L++   K   ++   K + E+V+  E      L        L++  K+  E  + L  
Sbjct: 316 NSLIKYMCK---IQRMKKVY-ELVDEMERKKGSCLPNAVTYCYLLKSLKEPGEVCRVLER 371

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M+   C      ++  L + +K +D     + W+  M  +G  PD  +Y ++     +  
Sbjct: 372 MERNGCGMNDDVYNMVLRLYMKWDDGDGVRKTWE-EMERNGWGPDRRSYTIMIHENFEKG 430

Query: 340 RVHEVEKFFHEMIKNEWQP 358
           RV +  ++  EMI     P
Sbjct: 431 RVKDAVRYLEEMISKGMVP 449



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 7/208 (3%)

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           FA L+  +     V+EA + F    E   E N E   A+ T L+ L R K V++A     
Sbjct: 140 FATLVRRFVGAHKVDEAIQLFYRRKEFGLELNSE---AFRTLLMWLCRYKHVEDAEALFH 196

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW-DIMMVFHGAFPDSLTYNMIFECLIK 337
               +     +K ++  L+    L +S  A ++W DI  V     PD  TY    + L K
Sbjct: 197 NSVKKGLRADIKMWNVILNGWCVLGNSHEAKRVWRDI--VASPCKPDIFTYATFIKALTK 254

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             ++    K F  M     +P  + C   I  L        A+EI+  + E G  P  A+
Sbjct: 255 KGKLGTALKLFRGMWDKGGKPDVVICNCIIDALCFKKRIPEALEIFCDMSERGCEPNVAT 314

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRR 425
            N L+  +  + R+  V    +EM  ++
Sbjct: 315 YNSLIKYMCKIQRMKKVYELVDEMERKK 342


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 155/341 (45%), Gaps = 23/341 (6%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  +VD L K GR ++    +  M E G   +L T+  + D    AG+ +EA   F  M 
Sbjct: 114 YTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDML 173

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-----KKIVDPDGDSFAILLEGWEK 229
            +G   D     +L+S + +   +   AL +LN++      + V+PD     +++     
Sbjct: 174 GNGCRPDAFVYTALISGLAKI-GKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCA 232

Query: 230 EGNVEEANKTFGEM-----VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            GN+E+A   F E+     +  F +NP         +  L + ++ +EA+ F++ M    
Sbjct: 233 SGNLEDALAYFDELDDSLDLTHFTFNP--------LVAALCKAERTEEAIAFVKKMSERR 284

Query: 285 CFPTLKFFSNALDILVKLNDSTHAV-QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
           CFPTL  +++ +D  +KL     A+ QL +   V  G  PD++TY  I + L K  RV E
Sbjct: 285 CFPTLFTYTSLVDGFLKLGRLDEALLQLKE--AVERGFIPDAVTYTSIIDGLCKLGRVEE 342

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
             + FHEM    ++P  +  A  I   + A     A  ++  +L++G +    + N +L 
Sbjct: 343 GCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILD 402

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           GL   GR+++       M  R  +   VT   L   F +E 
Sbjct: 403 GLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEG 443



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 148/332 (44%), Gaps = 11/332 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-----SLPTFASIFD 155
           F    G G R   + +  ++  L K G+ ++    +  M E+G        +     +  
Sbjct: 169 FVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIR 228

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVD 214
             C +G  ++A+  FD +    ++      N L++A+C+ E +T  A+ F+ ++ ++   
Sbjct: 229 QLCASGNLEDALAYFDELD-DSLDLTHFTFNPLVAALCKAE-RTEEAIAFVKKMSERRCF 286

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P   ++  L++G+ K G ++EA     E VER  + P+ V  Y + +  L +  +V+E  
Sbjct: 287 PTLFTYTSLVDGFLKLGRLDEALLQLKEAVER-GFIPDAV-TYTSIIDGLCKLGRVEEGC 344

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           +    M+     P    ++  +D  +K      A +++   M+  G    ++TYN+I + 
Sbjct: 345 ERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYR-QMLQSGTVVSTVTYNIILDG 403

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L K  RV E    F  M +     T +  +  +           A+E++  +L+ G  P 
Sbjct: 404 LCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPN 463

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
             S N ++ GL   G+L+    + E++L RR+
Sbjct: 464 LVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRL 495



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 144/354 (40%), Gaps = 46/354 (12%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
           L+ + +N +V  L K  R E+    V+ M E     +L T+ S+ D +   G+ DEA++ 
Sbjct: 252 LTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQ 311

Query: 170 FDVMSMHGVEQDVVAVNSLLSAIC---RQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
                  G   D V   S++  +C   R E    R  E  NR     +PD  ++A L++G
Sbjct: 312 LKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRG---YEPDAVTYAALIDG 368

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + K   + +A++ + +M++         + Y   L  L +  +V EA      M+   C 
Sbjct: 369 FMKAKMIPKAHRVYRQMLQ--SGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCV 426

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI--------------- 331
            T+  +S  +D      + + AV+L+   M+  G  P+ ++YN+I               
Sbjct: 427 ATVVTYSALMDGFCSEGNVSAAVELFR-RMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYF 485

Query: 332 -FECLIKNKRVHEVEKF--------------------FHEMIKNEWQPTPLNCATAITML 370
            FE L++ +   +V  F                    F  M+     P   + +  +  +
Sbjct: 486 YFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGI 545

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             A   E+ +EI++ ++  G+ P     N L+  L   GR+ +      E+  R
Sbjct: 546 CRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERR 599



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 109/230 (47%), Gaps = 22/230 (9%)

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VK 210
           ++ +  C  G+ D A++  D M       D+VA   +++ +CR E +   A   L R V+
Sbjct: 14  ALLNGLCKTGQLDRAMLLLDEMP---CSPDMVAFTVVINGLCR-EKRLDEAFSVLERAVR 69

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
              +PD  ++ + ++G  K   V++A +   +M E+ +  P  V  Y   +  L++  ++
Sbjct: 70  AGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEK-KCLPTTV-TYTALVDGLLKAGRL 127

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
           DEA+  L  M  +   PTLK ++  +D L K      A +++ + M+ +G  PD+  Y  
Sbjct: 128 DEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIF-VDMLGNGCRPDAFVYTA 186

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
           +   L K  ++ E   + ++M++N        CA  +       EP++ I
Sbjct: 187 LISGLAKIGKLDEALVYLNQMVEN-------GCARGV-------EPDVVI 222



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 116/288 (40%), Gaps = 8/288 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            F  + +  C   + DEA    +     G E D V  N  +  +C+ E +   A + L +
Sbjct: 43  AFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAE-RVDDAFQLLKK 101

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + +K   P   ++  L++G  K G ++EA     +MVE+   N   +  Y   +  L + 
Sbjct: 102 MDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEK--GNSPTLKTYTVVIDGLSKA 159

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM---VFHGAFPD 324
            +V+EA +    M G  C P    ++  +  L K+     A+   + M+      G  PD
Sbjct: 160 GRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPD 219

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            + +N++   L  +  + +   +F E+  +    T       +  L  A+  E AI    
Sbjct: 220 VVIHNLVIRQLCASGNLEDALAYFDEL-DDSLDLTHFTFNPLVAALCKAERTEEAIAFVK 278

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
            + E    P   +   L+ G   LGRL +     +E + R  +   VT
Sbjct: 279 KMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVT 326



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 41/242 (16%)

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           D     +LL+ +C+   Q  RA+  L+ +     PD  +F +++ G  +E  ++EA    
Sbjct: 8   DTRVCTALLNGLCKT-GQLDRAMLLLDEMP--CSPDMVAFTVVINGLCREKRLDEAFSVL 64

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            E   R    P++V  Y  F+  L + ++VD+A + L+ M  + C PT   ++  +D L+
Sbjct: 65  -ERAVRAGCEPDYV-TYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLL 122

Query: 301 KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
           K      A+ + +  MV  G  P   TY ++ + L K  RV E  + F +M+ N  +P  
Sbjct: 123 KAGRLDEAMAILE-QMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRP-- 179

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 420
                               + + Y               L+ GL  +G+L +   +  +
Sbjct: 180 --------------------DAFVY-------------TALISGLAKIGKLDEALVYLNQ 206

Query: 421 ML 422
           M+
Sbjct: 207 MV 208



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 39/208 (18%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           G  +S   +N+++D L K GR  + +     M+E G V ++ T++++ D +C  G    A
Sbjct: 389 GTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAA 448

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQ----------ENQTSRAL--------EFLNR 208
           V  F  M   G E ++V+ N ++  +CR           E    R L         FL+ 
Sbjct: 449 VELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHG 508

Query: 209 VKKIVDPDGD------------------SFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           + + +D  GD                  S++IL++G  + G +E   + F EMV R    
Sbjct: 509 LCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSR--GV 566

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLR 278
              V+ + T +  L    +VDEAL+  R
Sbjct: 567 APDVVVFNTLIRWLCIAGRVDEALEVFR 594


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 136/281 (48%), Gaps = 5/281 (1%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L T +++ +  C  G+  EA++  D M  +G + D V    +L+ +C+  N ++ AL+  
Sbjct: 204 LVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN-SALALDLF 262

Query: 207 NRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
            +++ + +      ++I+++   K+G+ ++A   F EM    +     V+ Y + +  L 
Sbjct: 263 RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM--EMKGIKADVVTYSSLIGGLC 320

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
              + D+  K LR M G N  P +  FS  +D+ VK      A +L++  M+  G  PD+
Sbjct: 321 NDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN-EMITRGIAPDT 379

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TYN + +   K   +HE  + F  M+    +P  +  +  I     A   +  + ++  
Sbjct: 380 ITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE 439

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           I   G++P   + N L++G    G+L+  +   +EM++R +
Sbjct: 440 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 480



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 139/297 (46%), Gaps = 14/297 (4%)

Query: 123 LGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           L K+G      +  R M+E  +  S+  ++ + DS C  G +D+A+  F+ M M G++ D
Sbjct: 249 LCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 308

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           VV  +SL+  +C        A      + + + PD  +F+ L++ + KEG + EA + + 
Sbjct: 309 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN 368

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM+ R    P+ +  Y + +    +   + EA +   +M  + C P +  +S      + 
Sbjct: 369 EMITR-GIAPDTI-TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYS------IL 420

Query: 302 LNDSTHAVQLWDIMMVFH-----GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
           +N    A ++ D M +F      G  P+++TYN +     ++ +++  ++ F EM+    
Sbjct: 421 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 480

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
            P+ +     +  L D  E   A+EI+  + ++ +       N ++ G+ N  ++ D
Sbjct: 481 PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDD 537



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 116/260 (44%), Gaps = 18/260 (6%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRF---EQMWNAV--RVMKEDGVLSLPTFASIFDSYCGA 160
           G+ + P    ++ ++DV  K G+    ++++N +  R +  D +    T+ S+ D +C  
Sbjct: 337 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTI----TYNSLIDGFCKE 392

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
               EA   FD+M   G E D+V  + L+++ C+ +        F     K + P+  ++
Sbjct: 393 NCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITY 452

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ G+ + G +  A + F EMV R    P  V+ Y   L  L    ++++AL+    M
Sbjct: 453 NTLVLGFCQSGKLNAAKELFQEMVSR--GVPPSVVTYGILLDGLCDNGELNKALEIFEKM 510

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF--HGAFPDSLTYNMIFECLIKN 338
           +       +  ++    I+  + +++     W +       G  PD +TYN++   L K 
Sbjct: 511 QKSRMTLGIGIYNI---IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKK 567

Query: 339 KRVHEVEKFFHEMIKNEWQP 358
             + E +  F +M ++   P
Sbjct: 568 GSLSEADMLFRKMKEDGCTP 587



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 154 FDSYCGA----GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F+  C A     +YD  +     M ++G+E D+  +  +++  CR++ +   A   L R 
Sbjct: 102 FNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKK-KLLFAFSVLGRA 160

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            K+  +PD  +F+ L+ G+  EG V EA      MVE  +  P+ V    T +  L    
Sbjct: 161 WKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE-MKQRPDLV-TVSTLINGLCLKG 218

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +V EAL  +  M      P    +   L+ L K  +S  A+ L+   M         + Y
Sbjct: 219 RVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFR-KMEERNIKASVVQY 277

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           +++ + L K+    +    F+EM     +   +  ++ I  L +  + +   ++   ++ 
Sbjct: 278 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 337

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
             I+P   + + L+      G+L + +    EM+ R I    +T + L   F  E+
Sbjct: 338 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 393



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 72  LACTGIIPTPDLVHEVLQLSY---DSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNG 127
           ++  G+IP   + +  L L +      ++A + F+    RG   S   + +++D L  NG
Sbjct: 440 ISSKGLIPNT-ITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 498

Query: 128 RFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
              +       M++  + L +  +  I    C A K D+A   F  +S  GV+ DVV  N
Sbjct: 499 ELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYN 558

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            ++  +C++ + +   + F    +    PD  ++ IL+
Sbjct: 559 VMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 596



 Score = 42.0 bits (97), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 6/171 (3%)

Query: 81  PDLV-HEVLQLSYDSPSSAVDFFRW----AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           PD+V + +L  SY       D  R     + +G   +   +N +V    ++G+       
Sbjct: 412 PDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKEL 471

Query: 136 VRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
            + M   GV  S+ T+  + D  C  G+ ++A+  F+ M    +   +   N ++  +C 
Sbjct: 472 FQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCN 531

Query: 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
                     F +   K V PD  ++ +++ G  K+G++ EA+  F +M E
Sbjct: 532 ASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 582


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 131/291 (45%), Gaps = 10/291 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++++V+ L K G+ +     + +M E G   +L TF ++ D +C AGK DE     ++M 
Sbjct: 375 YSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMK 434

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
                 DVV  ++L+   C+  N+   A   L      + PD  S++ +LEG    G VE
Sbjct: 435 EVSCTPDVVTYSTLIDGYCKA-NRMQDAFAILG-----ISPDKASYSSMLEGLCSTGKVE 488

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA +    M +  +  P     Y   +  L   ++ DEALK L+VM    C P L  +S 
Sbjct: 489 EAQEVMDLMTK--QGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSI 546

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            ++ L K      A+ + D+M+   G  PD  TY  + +   K  ++    + F  M  +
Sbjct: 547 LINGLCKTKRVEDAINVLDVMLE-KGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDS 605

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             +P  L     I+    +   E AIE+   +LE G  P  A+   L+  L
Sbjct: 606 GCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSL 656



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 158/388 (40%), Gaps = 56/388 (14%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G+    +++N +V  L ++G++E+    +  M E      + T+ S+ D +C   K DEA
Sbjct: 227 GREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEA 286

Query: 167 ---------------VMSFDV--------------------MSMHGVEQDVVAVNSLLSA 191
                          V+++                      M   G+  D+V  N LL  
Sbjct: 287 ERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDG 346

Query: 192 ICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +C+   +   A E L   V+K   PD  +++IL+ G  K G V++A      M+ER    
Sbjct: 347 LCKA-GKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLER-GCQ 404

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P +++ + T +    +  +VDE  K L +MK  +C P +  +S  +D   K N    A  
Sbjct: 405 P-NLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFA 463

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           +        G  PD  +Y+ + E L    +V E ++    M K    PT  + A  I  L
Sbjct: 464 IL-------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGL 516

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
            D +  + A+++   + E G  P   + + L+ GL    R+ D     + ML +  +   
Sbjct: 517 CDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDV 576

Query: 431 VTMHKLKKAF---------YNESRSMRD 449
            T   L   F         Y   ++MRD
Sbjct: 577 ATYTSLIDGFCKINKMDAAYQCFKTMRD 604



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 140/311 (45%), Gaps = 11/311 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++   +  AG     +   + M       DV+  N++L A C Q     RAL    R
Sbjct: 26  TYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYC-QIGDLDRALSHF-R 83

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            K    P   ++ IL+ G  +   ++EA +   EM+++ + +P+  + Y   +  L +  
Sbjct: 84  GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQK-DCHPDAAV-YNCLIAGLCKMG 141

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           ++D A   L++M   +C P +  +++ +    + N    A +L +  M   G  PD++ Y
Sbjct: 142 KIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLME-KMKESGLTPDTVAY 200

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N +   L K  ++ EV K   EM++   +P   +  T +  L ++ + E A +I   ++E
Sbjct: 201 NALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIE 260

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA--FYN 442
               P   + N L+ G   + ++ +  R  E+M+ RR    ++ Y   +    +A    +
Sbjct: 261 KKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLAD 320

Query: 443 ESRSMRDIFDS 453
             R M D+F +
Sbjct: 321 AYRVMEDMFKA 331



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/312 (21%), Positives = 142/312 (45%), Gaps = 14/312 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D L K G+ E+    + VM E D    + T++ + +  C  GK D+A +  ++M 
Sbjct: 340 YNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMML 399

Query: 175 MHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
             G + ++V  N+++   C+  + ++  + LE +  V     PD  +++ L++G+ K   
Sbjct: 400 ERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVS--CTPDVVTYSTLIDGYCKANR 457

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A    G        +P+   +Y + L  L    +V+EA + + +M  + C PT   +
Sbjct: 458 MQDAFAILG-------ISPDKA-SYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHY 509

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +  L  +     A+++  +M    G  P+  TY+++   L K KRV +       M+
Sbjct: 510 ALIIGGLCDVERGDEALKMLQVMSE-RGCEPNLYTYSILINGLCKTKRVEDAINVLDVML 568

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +    P      + I      ++ + A + +  + ++G  P + + N L+ G    G + 
Sbjct: 569 EKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVE 628

Query: 413 DVRRFAEEMLNR 424
                 + ML +
Sbjct: 629 KAIEVMQLMLEK 640



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/355 (21%), Positives = 141/355 (39%), Gaps = 48/355 (13%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
           + + + +++  L +  R ++ +  +  ++++D       +  +    C  GK D A    
Sbjct: 91  TAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVL 150

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEK 229
            +M       DV+   SL+   C Q N    A + + ++K+  + PD  ++  LL G  K
Sbjct: 151 KMMLERSCVPDVITYTSLIVGCC-QTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCK 209

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +  +EE +K   EMVE          +Y T +  L    + +EA K L  M  + C P  
Sbjct: 210 QNQLEEVSKLLEEMVE--AGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGP-- 265

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
                                             D +TYN + +   K  ++ E E+   
Sbjct: 266 ----------------------------------DVVTYNSLMDGFCKVSKMDEAERLLE 291

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           +M+     PT +   T I     AD    A  +   + + GI P   + N LL GL   G
Sbjct: 292 DMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAG 351

Query: 410 RLSDVRRFAEEMLNR----RILIYEVTMHKLKK-AFYNESRSMRDIFDSLERRCK 459
           +L +     E M+ +     ++ Y + ++ L K    +++R + ++   LER C+
Sbjct: 352 KLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMM--LERGCQ 404


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 145/328 (44%), Gaps = 7/328 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +N ++  L  NGR +      R M+     S+ T+  + D+ C + +  +A +  + M  
Sbjct: 71  YNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIE 130

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G   +VV  N+L++  C+  N     + F   ++    PD  ++ IL++G+ K+   ++
Sbjct: 131 AGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQD 190

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
             K   EMV ++   P  +  Y T + +L++  +  +A    ++M   +C P+   F+  
Sbjct: 191 GAKLLQEMV-KYGCEPNFI-TYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLM 248

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           +D+  K+     A +L+  +M   G  PD  TYN++     +  R+ +  +    M +  
Sbjct: 249 IDMFCKVGQLDLAYELFQ-LMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG 307

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
             P  +   + ++ L  A + + A E++  +   G      + + L+ GL    RL D  
Sbjct: 308 CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAE 367

Query: 416 RFAEEMLNR----RILIYEVTMHKLKKA 439
           +   EM        ++ Y + +H   KA
Sbjct: 368 KLLREMERNGSAPDVVAYTILIHGFCKA 395



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 119/273 (43%), Gaps = 4/273 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++++ + +C A  + +A    D M   G+       N+++  +C    +   AL     
Sbjct: 35  TYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLC-DNGRVDSALVHYRD 93

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +++   P   ++ IL++   K   + +A+    +M+E       +V+ Y T +    +  
Sbjct: 94  MQRHCAPSVITYTILVDALCKSARISDASLILEDMIE--AGCAPNVVTYNTLINGFCKLG 151

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            +DEA+     M   +C P +  ++  +D   K        +L    MV +G  P+ +TY
Sbjct: 152 NMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQ-EMVKYGCEPNFITY 210

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N + + L+K+ +  +       M++ + +P+       I M     + ++A E++  + +
Sbjct: 211 NTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTD 270

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            G LP   + N ++ G     R+ D R+  E M
Sbjct: 271 RGCLPDIYTYNIMISGACRANRIDDARQLLERM 303



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 11/210 (5%)

Query: 99  VDFFRWAG----RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           +D F  A     R  + S + +NLM+D+  K G+ +  +   ++M + G L  + T+  +
Sbjct: 224 IDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIM 283

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKK 211
               C A + D+A    + M+  G   DVV  NS++S +C+  Q ++     E L     
Sbjct: 284 ISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGY 343

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            +D    + + L++G  K   +++A K   EM ER    P+ V+AY   +    +  Q+D
Sbjct: 344 FLDVV--TCSTLIDGLCKSRRLDDAEKLLREM-ERNGSAPD-VVAYTILIHGFCKADQLD 399

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVK 301
           ++L F   M  + C PT+  +S  +D L K
Sbjct: 400 KSLAFFSEMLDKGCVPTVITYSIVIDKLCK 429



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/387 (20%), Positives = 146/387 (37%), Gaps = 72/387 (18%)

Query: 76  GIIPTPDLVHEVLQLSYDSP--SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMW 133
           GI+P   + + +++   D+    SA+  +R   R    S   + ++VD L K+ R     
Sbjct: 63  GIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDAS 122

Query: 134 NAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
             +  M E G   ++ T+ ++ + +C  G  DEAV+ F+ M  +    DV   N L+   
Sbjct: 123 LILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGY 182

Query: 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           C+QE     A      VK   +P+  ++  L++   K G   +A     +M+ R +  P 
Sbjct: 183 CKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDA-FNLAQMMLRRDCKPS 241

Query: 253 HV----------------LAYETFLITLIRG------------------KQVDEALKFLR 278
           H                 LAYE F +   RG                   ++D+A + L 
Sbjct: 242 HFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLE 301

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM----------------------- 315
            M    C P +  +++ +  L K +    A ++++++                       
Sbjct: 302 RMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSR 361

Query: 316 -----------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
                      M  +G+ PD + Y ++     K  ++ +   FF EM+     PT +  +
Sbjct: 362 RLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYS 421

Query: 365 TAITMLLDADEPEIAIEIWNYILENGI 391
             I  L  +        +   +LE G+
Sbjct: 422 IVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 104/240 (43%), Gaps = 4/240 (1%)

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
            N LLSA  R++        F N +  +  PD  +++ L+ G+ K  + ++A +   EM 
Sbjct: 1   CNCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEME 60

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           +R      H   Y T +  L    +VD AL   R M+  +C P++  ++  +D L K   
Sbjct: 61  KR--GIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ-RHCAPSVITYTILVDALCKSAR 117

Query: 305 STHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
            + A  + +  M+  G  P+ +TYN +     K   + E    F++M++N   P      
Sbjct: 118 ISDASLILED-MIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYN 176

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             I      + P+   ++   +++ G  P   + N L+  L   G+  D    A+ ML R
Sbjct: 177 ILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRR 236


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 162/334 (48%), Gaps = 16/334 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+++      G  E        M+ +G L ++ T+ +I D+YC   K  EA     +
Sbjct: 204 YTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRL 263

Query: 173 MSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           M++ G+  ++++ N +++ +CR  Q  +TS  LE +++ + +  PD  +F  L+ G+   
Sbjct: 264 MALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV--PDRVTFNTLINGYCNV 321

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN  +A     EMV+    +P +V+ Y T + ++ +   ++ A++FL  M+     P  +
Sbjct: 322 GNFHQALVLHAEMVKN-GLSP-NVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGR 379

Query: 291 FFSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIF--ECLIKNKRVHEVEK 346
            ++  +D     +      Q + IM  MV +G  P  +TYN +    C++   R+ +   
Sbjct: 380 TYTTLID---GFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCIL--GRMEDASG 434

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
              EMI+  + P  ++ +T I+      E E A ++   ++  GI P  A+ + L+ GL 
Sbjct: 435 LLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLC 494

Query: 407 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
              RL +V    +EML+  +   EVT   L  A+
Sbjct: 495 KQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAY 528



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 160/324 (49%), Gaps = 6/324 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N++++ L + G+ ++    +  M K   V    TF ++ + YC  G + +A++    M
Sbjct: 275 SYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEM 334

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
             +G+  +VV   +L++++C+  N  +RA+EFL++++ + + P+G ++  L++G+ ++G 
Sbjct: 335 VKNGLSPNVVTYTTLINSMCKAGN-LNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGF 393

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A +   EMVE   + P  ++ Y   +       ++++A   L+ M      P +  +
Sbjct: 394 LKQAYQIMKEMVEN-GFTPT-IITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSY 451

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           S  +    +  +   A QL  + MV  G  PD  TY+ + + L K +R+ EV   F EM+
Sbjct: 452 STIISGFCRNQELEKAFQL-KVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEML 510

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P  +   + I       + + A+ + + +++ G  P   + N L+ G     R  
Sbjct: 511 SLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTK 570

Query: 413 DVRRFAEEMLNRRILIYEVTMHKL 436
           + +R   ++L    +  E+T + L
Sbjct: 571 EAKRLLLKLLYEESVPNEITYNTL 594



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 117/261 (44%), Gaps = 6/261 (2%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE--FLNRVKKIVDPDGDSFA 221
           ++A+   ++   +G    V++ N++L A+ R + Q+ +  E  F   V+  V P+  ++ 
Sbjct: 149 NKALSIVNLAKSYGFMPGVLSYNAILDAVIRTK-QSVKIAEGIFKEMVESGVSPNVYTYN 207

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           IL+ G+   GN+E     FGEM ER    P +V+ Y T +    + +++ EA K LR+M 
Sbjct: 208 ILIRGFCTAGNLEMGLFFFGEM-ERNGCLP-NVVTYNTIIDAYCKLRKIGEAFKLLRLMA 265

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            +   P L  ++  ++ L +        ++ +  M      PD +T+N +          
Sbjct: 266 LKGLNPNLISYNVVINGLCREGQMKETSEILE-EMSKRRYVPDRVTFNTLINGYCNVGNF 324

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
           H+      EM+KN   P  +   T I  +  A     A+E  + + + G+ P   +   L
Sbjct: 325 HQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTL 384

Query: 402 LVGLRNLGRLSDVRRFAEEML 422
           + G    G L    +  +EM+
Sbjct: 385 IDGFSQQGFLKQAYQIMKEMV 405


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 136/281 (48%), Gaps = 5/281 (1%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L T +++ +  C  G+  EA++  D M  +G + D V    +L+ +C+  N ++ AL+  
Sbjct: 175 LVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN-SALALDLF 233

Query: 207 NRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
            +++ + +      ++I+++   K+G+ ++A   F EM    +     V+ Y + +  L 
Sbjct: 234 RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM--EMKGIKADVVTYSSLIGGLC 291

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
              + D+  K LR M G N  P +  FS  +D+ VK      A +L++  M+  G  PD+
Sbjct: 292 NDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN-EMITRGIAPDT 350

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TYN + +   K   +HE  + F  M+    +P  +  +  I     A   +  + ++  
Sbjct: 351 ITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE 410

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           I   G++P   + N L++G    G+L+  +   +EM++R +
Sbjct: 411 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 451



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 139/297 (46%), Gaps = 14/297 (4%)

Query: 123 LGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           L K+G      +  R M+E  +  S+  ++ + DS C  G +D+A+  F+ M M G++ D
Sbjct: 220 LCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           VV  +SL+  +C        A      + + + PD  +F+ L++ + KEG + EA + + 
Sbjct: 280 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN 339

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM+ R    P+ +  Y + +    +   + EA +   +M  + C P +  +S      + 
Sbjct: 340 EMITR-GIAPDTI-TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYS------IL 391

Query: 302 LNDSTHAVQLWDIMMVFH-----GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
           +N    A ++ D M +F      G  P+++TYN +     ++ +++  ++ F EM+    
Sbjct: 392 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 451

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
            P+ +     +  L D  E   A+EI+  + ++ +       N ++ G+ N  ++ D
Sbjct: 452 PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDD 508



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 116/260 (44%), Gaps = 18/260 (6%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRF---EQMWNAV--RVMKEDGVLSLPTFASIFDSYCGA 160
           G+ + P    ++ ++DV  K G+    ++++N +  R +  D +    T+ S+ D +C  
Sbjct: 308 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTI----TYNSLIDGFCKE 363

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
               EA   FD+M   G E D+V  + L+++ C+ +        F     K + P+  ++
Sbjct: 364 NCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITY 423

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ G+ + G +  A + F EMV R    P  V+ Y   L  L    ++++AL+    M
Sbjct: 424 NTLVLGFCQSGKLNAAKELFQEMVSR--GVPPSVVTYGILLDGLCDNGELNKALEIFEKM 481

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF--HGAFPDSLTYNMIFECLIKN 338
           +       +  ++    I+  + +++     W +       G  PD +TYN++   L K 
Sbjct: 482 QKSRMTLGIGIYNI---IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKK 538

Query: 339 KRVHEVEKFFHEMIKNEWQP 358
             + E +  F +M ++   P
Sbjct: 539 GSLSEADMLFRKMKEDGCTP 558



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 126/296 (42%), Gaps = 9/296 (3%)

Query: 154 FDSYCGA----GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F+  C A     +YD  +     M ++G+E D+  +  +++  CR++ +   A   L R 
Sbjct: 73  FNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKK-KLLFAFSVLGRA 131

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            K+  +PD  +F+ L+ G+  EG V EA      MVE  +  P+ V    T +  L    
Sbjct: 132 WKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE-MKQRPDLV-TVSTLINGLCLKG 189

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +V EAL  +  M      P    +   L+ L K  +S  A+ L+   M         + Y
Sbjct: 190 RVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFR-KMEERNIKASVVQY 248

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           +++ + L K+    +    F+EM     +   +  ++ I  L +  + +   ++   ++ 
Sbjct: 249 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 308

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
             I+P   + + L+      G+L + +    EM+ R I    +T + L   F  E+
Sbjct: 309 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 72  LACTGIIPTPDLVHEVLQLSY---DSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNG 127
           ++  G+IP   + +  L L +      ++A + F+    RG   S   + +++D L  NG
Sbjct: 411 ISSKGLIPNT-ITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 469

Query: 128 RFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
              +       M++  + L +  +  I    C A K D+A   F  +S  GV+ DVV  N
Sbjct: 470 ELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYN 529

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            ++  +C++ + +   + F    +    PD  ++ IL+
Sbjct: 530 VMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567



 Score = 42.0 bits (97), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 6/171 (3%)

Query: 81  PDLV-HEVLQLSYDSPSSAVDFFRW----AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           PD+V + +L  SY       D  R     + +G   +   +N +V    ++G+       
Sbjct: 383 PDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKEL 442

Query: 136 VRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
            + M   GV  S+ T+  + D  C  G+ ++A+  F+ M    +   +   N ++  +C 
Sbjct: 443 FQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCN 502

Query: 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
                     F +   K V PD  ++ +++ G  K+G++ EA+  F +M E
Sbjct: 503 ASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 553


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 159/324 (49%), Gaps = 6/324 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N++++ L + GR +++   +  M   G  L   T+ ++   YC  G + +A++    M
Sbjct: 277 SYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM 336

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
             HG+   V+   SL+ ++C+  N  +RA+EFL++++ + + P+  ++  L++G+ ++G 
Sbjct: 337 LRHGLTPSVITYTSLIHSMCKAGNM-NRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGY 395

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + EA +   EM +   ++P  V+ Y   +       ++++A+  L  MK +   P +  +
Sbjct: 396 MNEAYRVLREMNDN-GFSPS-VVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSY 453

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           S  L    +  D   A+++    MV  G  PD++TY+ + +   + +R  E    + EM+
Sbjct: 454 STVLSGFCRSYDVDEALRVKR-EMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEML 512

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +    P        I       + E A+++ N ++E G+LP   + + L+ GL    R  
Sbjct: 513 RVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTR 572

Query: 413 DVRRFAEEMLNRRILIYEVTMHKL 436
           + +R   ++     +  +VT H L
Sbjct: 573 EAKRLLLKLFYEESVPSDVTYHTL 596



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/376 (20%), Positives = 163/376 (43%), Gaps = 43/376 (11%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           ++SP  + +N+++      G  +        M+  G L ++ T+ ++ D YC   K D+ 
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILL 224
                 M++ G+E ++++ N +++ +CR+    + S  L  +NR  +    D  ++  L+
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNR--RGYSLDEVTYNTLI 317

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G+ KEGN  +A     EM+ R    P  V+ Y + + ++ +   ++ A++FL  M+   
Sbjct: 318 KGYCKEGNFHQALVMHAEML-RHGLTPS-VITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 375

Query: 285 CFPTLKFFSNALD-------------ILVKLND--------------STHAV--QLWDIM 315
             P  + ++  +D             +L ++ND              + H V  ++ D +
Sbjct: 376 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435

Query: 316 MVFH-----GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
            V       G  PD ++Y+ +     ++  V E  +   EM++   +P  +  ++ I   
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
            +    + A +++  +L  G+ P E +   L+      G L    +   EM+ + +L   
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555

Query: 431 VTMHKLKKAFYNESRS 446
           VT   L      +SR+
Sbjct: 556 VTYSVLINGLNKQSRT 571



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 146/364 (40%), Gaps = 26/364 (7%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ-----------------RLSPYAWNLMVDV 122
           TP+    +L  S +  +  + F  WA   Q                 +L   A  L  DV
Sbjct: 47  TPEAASNLLLKSQNDQALILKFLNWANPHQFFTLRCKCITLHILTKFKLYKTAQILAEDV 106

Query: 123 LGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFD----SYCGAGKYDEAVMSFDVMSMHGV 178
             K    E      + ++E   L   T +S+FD    SY      D+A+    +   HG 
Sbjct: 107 AAKTLDDEYASLVFKSLQETYDLCYST-SSVFDLVVKSYSRLSLIDKALSIVHLAQAHGF 165

Query: 179 EQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
              V++ N++L A  R +   S A   F   ++  V P+  ++ IL+ G+   GN++ A 
Sbjct: 166 MPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVAL 225

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
             F +M E     P +V+ Y T +    + +++D+  K LR M  +   P L  ++  ++
Sbjct: 226 TLFDKM-ETKGCLP-NVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
            L +       V      M   G   D +TYN + +   K    H+      EM+++   
Sbjct: 284 GLCR-EGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLT 342

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
           P+ +   + I  +  A     A+E  + +   G+ P E +   L+ G    G +++  R 
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402

Query: 418 AEEM 421
             EM
Sbjct: 403 LREM 406



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 5/123 (4%)

Query: 319 HGAFPDSLTYNMIFECLIKNKR-VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
           HG  P  L+YN + +  I++KR +   E  F EM++++  P        I     A   +
Sbjct: 163 HGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNID 222

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSD----VRRFAEEMLNRRILIYEVTM 433
           +A+ +++ +   G LP   + N L+ G   L ++ D    +R  A + L   ++ Y V +
Sbjct: 223 VALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVI 282

Query: 434 HKL 436
           + L
Sbjct: 283 NGL 285


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 148/340 (43%), Gaps = 38/340 (11%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVL-SLPTFASIFDSYCGAGKYDE 165
           G   S  + N++V    K GR E   N ++ M  +DG      TF ++ +  C AG    
Sbjct: 254 GCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKH 313

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A+   DVM   G + DV   NS++S +C+   +   A+EFL++ + +   P+  ++  L+
Sbjct: 314 AIEIMDVMLQEGYDPDVYTYNSVISGLCKL-GEVKEAVEFLDQMITRDCSPNTVTYNTLI 372

Query: 225 EGWEKEGNVEEANK---------------TFGEMVERFEWNPEHVLAYETF--------- 260
               KE  VEEA +               TF  +++       H +A E F         
Sbjct: 373 STLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCE 432

Query: 261 ---------LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
                    + +L    ++DEAL  L+ M+   C  ++  ++  +D   K N    A ++
Sbjct: 433 PDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEI 492

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
           +D M V HG   +S+TYN + + L K++RV +  +   +MI    +P      + +T   
Sbjct: 493 FDEMEV-HGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFC 551

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
              + + A +I   +  NG  P   +   L+ GL   GR+
Sbjct: 552 RGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 149/351 (42%), Gaps = 45/351 (12%)

Query: 96  SSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFAS 152
           S+A+  F  A +    SP    +  ++  LG++G F+ M   +  MK  G  +    F  
Sbjct: 64  SAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLI 123

Query: 153 IFDSYCGAGKYDEAV------------------------------------MSFDVMSMH 176
           + +SY      DE +                                    ++   MS+ 
Sbjct: 124 LIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVW 183

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G++ DV   N L+ A+CR        L   +     + PD  +F  +++G+ +EG+++ A
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGA 243

Query: 237 NKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PTLKFFSN 294
            +   +MVE    W+    ++    +    +  +V++AL F++ M  ++ F P    F+ 
Sbjct: 244 LRIREQMVEFGCSWSN---VSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNT 300

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            ++ L K     HA+++ D+M+   G  PD  TYN +   L K   V E  +F  +MI  
Sbjct: 301 LVNGLCKAGHVKHAIEIMDVMLQ-EGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITR 359

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           +  P  +   T I+ L   ++ E A E+   +   GILP   + N L+ GL
Sbjct: 360 DCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 149/329 (45%), Gaps = 7/329 (2%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVL 123
           ++   L   GI+P     + ++Q   L+ +   +   F     +G     + +N+++D L
Sbjct: 386 ELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSL 445

Query: 124 GKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
              G+ ++  N ++ M+  G   S+ T+ ++ D +C A K  EA   FD M +HGV ++ 
Sbjct: 446 CSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNS 505

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
           V  N+L+  +C+       +      + +   PD  ++  LL  + + G++++A      
Sbjct: 506 VTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQA 565

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M       P+ ++ Y T +  L +  +V+ A K LR ++ +    T   ++  +  L + 
Sbjct: 566 MTSN-GCEPD-IVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRK 623

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR-VHEVEKFFHEMIKNEWQPTPL 361
             +T A+ L+  M+  + A PD+++Y ++F  L      + E   F  E+++  + P   
Sbjct: 624 RKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFS 683

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENG 390
           +       LL     E  +++ N +++  
Sbjct: 684 SLYMLAEGLLTLSMEETLVKLVNMVMQKA 712



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 87/238 (36%), Gaps = 38/238 (15%)

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL+    + +   A + F    ++  ++PE  L YE  L+ L R    D+  K L  MK 
Sbjct: 53  LLDSLRSQADDSAALRLFNLASKKPNFSPEPAL-YEEILLRLGRSGSFDDMRKILEDMKN 111

Query: 283 ENC------------------------------------FPTLKFFSNALDILVKLNDST 306
             C                                     P   F++  L++LV  N+  
Sbjct: 112 SGCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNN-L 170

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
             V++    M   G  PD  T+N++ + L +  ++        +M      P      T 
Sbjct: 171 KLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTI 230

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           +   ++  + + A+ I   ++E G      S N ++ G    GR+ D   F +EM N+
Sbjct: 231 MQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQ 288


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 150/326 (46%), Gaps = 4/326 (1%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
            + +N+MV+ L K+ R ++    V  MK   +L  L T+ S+ D    +G+ +EA   F  
Sbjct: 704  FVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTK 763

Query: 173  MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
            M+  G E DVVA  SL+  + +    +   + F    KK   PD  +++ L++   KEG 
Sbjct: 764  MTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGR 823

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            VEEA   F   + +    P +V  Y + + +  +   VD AL+    M+   C P +  +
Sbjct: 824  VEEAYYFFENSISK-GCTP-NVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTY 881

Query: 293  SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
            +N L  L K      A +L + M    G  PD +TYN++ + + K   V E E +F  M 
Sbjct: 882  NNLLSGLAKAGRLNVAEKLLEEMEKV-GCVPDLVTYNILIDGVGKMGMVDEAESYFKRMK 940

Query: 353  KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
            +    P  +   + I  L   D+   A E+++ + E G  P   + N L+  L   G++ 
Sbjct: 941  EKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVH 1000

Query: 413  DVRRFAEEMLNRRILIYEVTMHKLKK 438
            +      EM  +  +   +T+  +K+
Sbjct: 1001 EAAMIFHEMKVKGCMPDGITIGIMKR 1026



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 146/348 (41%), Gaps = 41/348 (11%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+N ++D LGK G  +      + MK+ G++ +L T+  +      AG+  EA   F  +
Sbjct: 394 AYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDL 453

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   DV   N+L+  + +   Q  + L     +K++V+  G+           EG +
Sbjct: 454 KEQGAVPDVFTYNTLIDVLGKG-GQMDKVLAI---IKEMVEKGGECIISRDSNAGHEGTI 509

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E A++T       F+   E  + Y T +   I    VDEA+K L VMK   C PT+  ++
Sbjct: 510 EGADRTVEYPSLGFKSLGE--ITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYT 567

Query: 294 NALDILVKLNDSTHAVQLWDIM----------------------------------MVFH 319
             +D L K      AV L   M                                  MV  
Sbjct: 568 TLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRK 627

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
           G   D  TY+++  CL K+  V +    F  M +   +P   N  T ++ L+  ++ + A
Sbjct: 628 GCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFA 687

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           ++I+N + E+ ++P     N ++ GL    R+ +  +  + M N+ IL
Sbjct: 688 LQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNIL 735



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 120/253 (47%), Gaps = 6/253 (2%)

Query: 101  FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCG 159
            F +    G      A+  ++DVLGK G+        R M K+  V  + T++S+ DS   
Sbjct: 761  FTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGK 820

Query: 160  AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGD 218
             G+ +EA   F+     G   +V   +SL+ +  ++     RALE    + ++   P+  
Sbjct: 821  EGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKK-GMVDRALELFEEMQRRQCPPNIV 879

Query: 219  SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            ++  LL G  K G +  A K   EM E+    P+ ++ Y   +  + +   VDEA  + +
Sbjct: 880  TYNNLLSGLAKAGRLNVAEKLLEEM-EKVGCVPD-LVTYNILIDGVGKMGMVDEAESYFK 937

Query: 279  VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
             MK +   P +  F++ ++ L K++    A +L+D M    G  P  +TYN++ + L + 
Sbjct: 938  RMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEE-EGYNPSVVTYNVLIDILGRA 996

Query: 339  KRVHEVEKFFHEM 351
             +VHE    FHEM
Sbjct: 997  GKVHEAAMIFHEM 1009



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 94/421 (22%), Positives = 162/421 (38%), Gaps = 48/421 (11%)

Query: 69  ESALACT--------GIIP---TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWN 117
           E+ +AC         G++P   T +++  VL  +   P +   F     +G     + +N
Sbjct: 407 EADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYN 466

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDG--------------------------------VL 145
            ++DVLGK G+ +++   ++ M E G                                 L
Sbjct: 467 TLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSL 526

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
              T+ ++  ++   G  DEAV   +VM  H     VV   +L+  + +   +   A+  
Sbjct: 527 GEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKA-GRLDEAVSL 585

Query: 206 LNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L  + K+  +P   +++ L+  + K    EE+   F EMV +       V  Y   +  L
Sbjct: 586 LREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRK--GCVADVSTYSLVINCL 643

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            +   VD+AL     MK E   P L  +   L  LVK      A+Q+++ +       PD
Sbjct: 644 CKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQE-SSLVPD 702

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
           +  YN++   L+K+ RV E  K    M      P      + +  L  +   E A  ++ 
Sbjct: 703 TFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFT 762

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            + E G  P   +   L+  L   G+LS        M  +R +   VT   L  +   E 
Sbjct: 763 KMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEG 822

Query: 445 R 445
           R
Sbjct: 823 R 823



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 134/327 (40%), Gaps = 6/327 (1%)

Query: 101 FFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSY 157
           FF WAG+  G   +   + LM+  L      + +   +  M KE   +S+    S+  ++
Sbjct: 168 FFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTF 227

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
                   A+  F+ M   G        N +L  + +     S  + F    +  + PD 
Sbjct: 228 GSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDA 287

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +F I +  + + G ++ A +   EM+ +   +P  V  +   +  L++   +DEA KF 
Sbjct: 288 QTFRIFVHSFNRSGRLDPAAEPIQEMI-KSGIDP-GVHTFTVLIDALVKSGNIDEACKFF 345

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             MK   C P +  ++  ++ L K      A +++ + M  +   PD++ YN + + L K
Sbjct: 346 NGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVF-VEMKENNCSPDAIAYNTLIDGLGK 404

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
                     F EM      P        I++L  A     A ++++ + E G +P   +
Sbjct: 405 AGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFT 464

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNR 424
            N L+  L   G++  V    +EM+ +
Sbjct: 465 YNTLIDVLGKGGQMDKVLAIIKEMVEK 491



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 90/421 (21%), Positives = 162/421 (38%), Gaps = 79/421 (18%)

Query: 76  GIIPTPDLVHEVLQLSYDSP--SSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQ 131
           G  P+ ++ + VL+L        SAV  F   G+  R+ P A  + + V    ++GR + 
Sbjct: 247 GCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQ-FRIQPDAQTFRIFVHSFNRSGRLDP 305

Query: 132 MWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
               ++ M + G+   + TF  + D+   +G  DEA                        
Sbjct: 306 AAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEA------------------------ 341

Query: 191 AICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
             C+          F N +K +   P+  ++  L+ G  K G +EEA + F EM E    
Sbjct: 342 --CK----------FFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKEN-NC 388

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
           +P+  +AY T +  L +  + D A    + MK     P L+ ++  + +L K      A 
Sbjct: 389 SPD-AIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAW 447

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK-----------NEWQP 358
           QL+  +    GA PD  TYN + + L K  ++ +V     EM++           N    
Sbjct: 448 QLFHDLKE-QGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHE 506

Query: 359 TPLNCA--------------------TAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
             +  A                    T ++  +     + A+++   + ++  +P   + 
Sbjct: 507 GTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTY 566

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY--NESRSMRDIFDSLER 456
             L+ GL   GRL +      EM  +      VT   L  +FY  ++      +FD + R
Sbjct: 567 TTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVR 626

Query: 457 R 457
           +
Sbjct: 627 K 627



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 111/299 (37%), Gaps = 44/299 (14%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ T+  +     GA + D  V     M   G    +  + SLL       N  S ALE 
Sbjct: 181 TVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTF-GSTNNVSGALEI 239

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
            N++K    +P  + +  +LE   K G    A   FG++  +F   P+            
Sbjct: 240 FNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKL-GQFRIQPDA----------- 287

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
                                  T + F ++ +   +L+ +   +Q     M+  G  P 
Sbjct: 288 ----------------------QTFRIFVHSFNRSGRLDPAAEPIQ----EMIKSGIDPG 321

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
             T+ ++ + L+K+  + E  KFF+ M      P  +   T +  L  A   E A E++ 
Sbjct: 322 VHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFV 381

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL----IYEVTMHKLKKA 439
            + EN   P   + N L+ GL   G         +EM +R ++     Y + +  L KA
Sbjct: 382 EMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKA 440


>gi|255548349|ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545711|gb|EEF47215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 505

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 182/408 (44%), Gaps = 49/408 (12%)

Query: 59  ILAHASSDDIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAG--RGQRLSP 113
           I + +S  +++ +L  TGI  + DL+ +VL+    S+ +P  A++FF +    +G   +P
Sbjct: 46  ITSSSSVQNLKQSLTSTGIFLSNDLIDKVLKRVRFSHGNPLQALEFFYYTDNRKGFYHTP 105

Query: 114 YAWNLMVDVLGKNGRFEQMWNA-VRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFD 171
           Y+ + ++ +LG++ +F+ +W+  +++ ++D  L  P T   +           + V SF 
Sbjct: 106 YSLDTILYILGRSRKFDHIWDVLIKMKRKDRFLISPRTMQIVLARVAKLCSVRQTVESFR 165

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
                    D    N+LL  +C QE   + A    +R+KK   P+  +F ILL GW++  
Sbjct: 166 KFKKFVSVLDTTCFNALLRTLC-QEKSMTDARNVYHRLKKEFKPNLQTFNILLSGWKQS- 223

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             EEA   F EM E     P+ V++Y + +    + +++++A K +  M+ E+  P +  
Sbjct: 224 --EEAELFFEEMRE-LGIKPD-VVSYNSLIDVYCKDREMEKAYKVVEKMREEDISPDVIT 279

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +++ +  L  +     A  + + M  + G +PD   YN +       KR+ +      EM
Sbjct: 280 YTSIIGGLGLVGQPDKARDILNEMKEY-GCYPDVAAYNAVIRNYCIAKRLGDASNLMDEM 338

Query: 352 ------------------------IKNEWQ-----------PTPLNCATAITMLLDADEP 376
                                   ++N W            P   +C   I +    ++ 
Sbjct: 339 ASKGLSPNATTYNLFFRVFYWSNDLRNSWSLYRRMMESGCLPNTQSCMFLIRLFRKHEKV 398

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           E+A+ +WN ++E G       ++ L   L ++G+L +  +   +M+ +
Sbjct: 399 EMALTLWNDMVEKGFGSYILVSDVLFDLLCDMGKLVEAEKCFLQMIEK 446


>gi|297807523|ref|XP_002871645.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317482|gb|EFH47904.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 524

 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 150/320 (46%), Gaps = 14/320 (4%)

Query: 49  ISSSARIICEILAHASSD--DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG 106
           +S     I ++L +  SD  ++ + L    + P+ +LV E+L    +   +A  FF WAG
Sbjct: 42  VSEDVGTIVKLLKNCGSDRKELRNKLEECDVKPSNELVVEILSQVRNDWETAFTFFVWAG 101

Query: 107 RGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFASIFDSYCGAGK 162
           + Q    S   ++ M+ +LGK  +F+  W  +  M++    +++  T   +   YC    
Sbjct: 102 KQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHD 161

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT-SRALEFLNRVKKIVDPDGDSFA 221
             +A+ +F       +E  +    SLLSA+CR +N + +  L F N  K     D  SF 
Sbjct: 162 VGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAEHLIFCN--KDTYPFDAKSFN 219

Query: 222 ILLEGW-EKEGNVEEANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVDEALKFLRV 279
           I+L GW    G+  EA + + EM        +H V++Y + +    +G  +++ LK    
Sbjct: 220 IVLNGWCNVIGSPREAERVWMEMGNV---GVKHDVVSYSSMISCYSKGGSLNKVLKLFDR 276

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           MK E+  P  K ++  +  L K +  + A  L   M    G  P+ +TYN + + L K +
Sbjct: 277 MKKESIEPDRKVYNAVIHALAKASFVSEARNLMKTMEEEKGMEPNVVTYNSLIKPLCKAR 336

Query: 340 RVHEVEKFFHEMIKNEWQPT 359
           +  E ++ F EM++    PT
Sbjct: 337 KTEEAKQVFDEMLEKGLFPT 356



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 99/245 (40%), Gaps = 37/245 (15%)

Query: 149 TFASIFDSYCGA-GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           +F  + + +C   G   EA   +  M   GV+ DVV+ +S++S   +     ++ L+  +
Sbjct: 217 SFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKG-GSLNKVLKLFD 275

Query: 208 RVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           R+KK  ++PD   +  ++    K   V EA      M E     P +V+ Y + +  L +
Sbjct: 276 RMKKESIEPDRKVYNAVIHALAKASFVSEARNLMKTMEEEKGMEP-NVVTYNSLIKPLCK 334

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDI---------------------------- 298
            ++ +EA +    M  +  FPT++ +   + I                            
Sbjct: 335 ARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMGCQPTVDTYIM 394

Query: 299 ----LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
               L +  D  + + LW+ M    G  PD  +Y ++   L  N ++ E   ++ EM + 
Sbjct: 395 LIRKLCRWRDFDNVLLLWNEMKE-KGVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKEK 453

Query: 355 EWQPT 359
             +P 
Sbjct: 454 GMRPN 458


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 154/348 (44%), Gaps = 8/348 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + +++D   K G+ E     V VM E G V +L T+ S+ D +C   + + A      M
Sbjct: 327 TYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSM 386

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   +VV+ N++++ +C+        L     +     PD  +F  +++   K   V
Sbjct: 387 IQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRV 446

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM-KGENCFPTLKFF 292
           + A + F  +++     P +++ Y + +  L + ++ D+A   LR M + + C P +  +
Sbjct: 447 DIAYELF-NLIQESGCTP-NLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITY 504

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +D L K      A +L+ + M+  G  PD +TY+++   L K + + E       M+
Sbjct: 505 NTVIDGLCKSKRVDRAYKLF-LQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELML 563

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           KN + P  +   T I         + A+EI   +L  G  P   + +  +  L   GRL 
Sbjct: 564 KNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLR 623

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLE--RRC 458
                 E ML   ++   VT + L K F + SR+  D  D  E  R+C
Sbjct: 624 QAGELLETMLRAGLVPDTVTYNTLLKGFCDASRT-EDAVDLFEVMRQC 670



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 149/347 (42%), Gaps = 46/347 (13%)

Query: 96  SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           S AV  FR   +        +N M++ L K+ R +     +  M ++G   ++ ++ ++ 
Sbjct: 27  SDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVL 86

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIV 213
             +C A + + A+   + M M G   DVV+  ++++ +C+ + Q   A   +++ +++  
Sbjct: 87  HGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLD-QVDEACRVMDKMIQRGC 145

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVER------FEWN----------------- 250
            P+  ++  L++G+ + G+++ A +   +M ER        +N                 
Sbjct: 146 QPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQ 205

Query: 251 -----------PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
                      P  V  Y T + +L++  +VD+A + +  M  + C P +  +S+ L  L
Sbjct: 206 LFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGL 265

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            K      A  L    M   G  P+ +TYN I +   K  R+ E      EM+    QP 
Sbjct: 266 CKAGKLDEATALLQ-RMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPN 324

Query: 360 PLNCATAITMLLDA----DEPEIAIEIWNYILENGILPLEASANELL 402
                   T+LLDA     + E AI +   ++E G +P   + N LL
Sbjct: 325 ----VVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLL 367



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 132/280 (47%), Gaps = 8/280 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++D + K  R +  +    +++E G   +L T+ S+    C + ++D+A      M
Sbjct: 432 TFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREM 491

Query: 174 S-MHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +   G   D++  N+++  +C+ + +  RA + FL  +   + PD  +++I++    K  
Sbjct: 492 TRKQGCSPDIITYNTVIDGLCKSK-RVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWR 550

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++EAN    E++ +  ++P   + Y T +    +   +D+AL+ L+++  +  +P +  
Sbjct: 551 FMDEANNVL-ELMLKNGFDP-GAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVT 608

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           FS  +D L K      A +L + M+   G  PD++TYN + +      R  +    F  M
Sbjct: 609 FSIFIDWLSKRGRLRQAGELLETML-RAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVM 667

Query: 352 IKNEWQPTPLNCATAITMLLDADE-PEIAIEIWNYILENG 390
            +   +P      T +  L+D     ++  E+   +++ G
Sbjct: 668 RQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTG 707



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 120/272 (44%), Gaps = 9/272 (3%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M+  G++       S+L  +C    Q S A+     + K   PD  ++  ++ G  K   
Sbjct: 1   MNRKGLKAHAGVHKSILRGLC-DAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDR 59

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A +   EMV+   + P +V +Y T L    +  +V+ AL  L  M    C P +  +
Sbjct: 60  LDDAIRLLEEMVDN-GFAP-NVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSY 117

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  ++ L KL+    A ++ D  M+  G  P+ +TY  + +   +   +    +   +M 
Sbjct: 118 TTVINGLCKLDQVDEACRVMD-KMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMT 176

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV-GLRNLGRL 411
           +  ++P  +     +  L    + + A++++  + E+G  P +      +V  L   G++
Sbjct: 177 ERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKV 236

Query: 412 SDVRRFAEEMLNR----RILIYEVTMHKLKKA 439
            D  R  E M+++     ++ Y   +H L KA
Sbjct: 237 DDACRLVEAMVSKGCSPNVVTYSSLLHGLCKA 268


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 151/323 (46%), Gaps = 6/323 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +     +N++++ + K GR ++    +  M   G   ++ T   I  S C  G++ +
Sbjct: 280 KGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMD 339

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A      M   G    VV  N L++ +CRQ     RA++ L ++      P+  S+  LL
Sbjct: 340 AEKLLSDMLRKGCSPSVVTFNILINFLCRQ-GLLGRAIDILEKMPMHGCTPNSLSYNPLL 398

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ KE  ++ A +    MV R  + P+ ++ Y T L  L +  +VD A++ L  +  + 
Sbjct: 399 HGFCKEKKMDRAIEYLDIMVSRGCY-PD-IVTYNTLLTALCKDGKVDVAVEILNQLSSKG 456

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C P L  ++  +D L K+  +  A++L D  M   G  PD +TY+ +   L +  +V E 
Sbjct: 457 CSPVLITYNTVIDGLSKVGKTERAIKLLD-EMRRKGLKPDIITYSSLVSGLSREGKVDEA 515

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            KFFH++     +P  +   + +  L  + + + AI+   Y++     P EA+   L+ G
Sbjct: 516 IKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEG 575

Query: 405 LRNLGRLSDVRRFAEEMLNRRIL 427
           +   G   +      E+ +R ++
Sbjct: 576 IAYEGLAKEALDLLNELCSRGLV 598



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 148/331 (44%), Gaps = 42/331 (12%)

Query: 127 GRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G+ ++    + ++++ G +  + T+  +   YC +G+ D A+   D M+   V  DVV  
Sbjct: 163 GKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTY 219

Query: 186 NSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           N++L  +C    +  +A+E L+R ++K   PD  ++ IL+E   KE  V +A K   EM 
Sbjct: 220 NTILRTLC-DSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEM- 277

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL--------------- 289
            R + +   V+ Y   +  + +  ++DEA+KFL  M    C P +               
Sbjct: 278 -RNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 336

Query: 290 -----KFFSNAL-----------DILVK-LNDSTHAVQLWDIM--MVFHGAFPDSLTYNM 330
                K  S+ L           +IL+  L       +  DI+  M  HG  P+SL+YN 
Sbjct: 337 WMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNP 396

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +     K K++    ++   M+     P  +   T +T L    + ++A+EI N +   G
Sbjct: 397 LLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKG 456

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
             P+  + N ++ GL  +G+     +  +EM
Sbjct: 457 CSPVLITYNTVIDGLSKVGKTERAIKLLDEM 487



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 156/354 (44%), Gaps = 11/354 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++  L  +G+ +Q    + R ++++    + T+  + ++ C      +A+   D M
Sbjct: 218 TYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEM 277

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G + DVV  N L++ IC+ E +   A++FLN +      P+  +  I+L      G 
Sbjct: 278 RNKGSKPDVVTYNVLINGICK-EGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 336

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             +A K   +M+ R   +P  V+ +   +  L R   +  A+  L  M    C P    +
Sbjct: 337 WMDAEKLLSDML-RKGCSPS-VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSY 394

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  L    K      A++  DIM V  G +PD +TYN +   L K+ +V    +  +++ 
Sbjct: 395 NPLLHGFCKEKKMDRAIEYLDIM-VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLS 453

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P  +   T I  L    + E AI++ + +   G+ P   + + L+ GL   G++ 
Sbjct: 454 SKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVD 513

Query: 413 DVRRFAEEMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 462
           +  +F  ++    I    + Y   M  L K+   + R++  +   + +RCK ++
Sbjct: 514 EAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTD-RAIDFLAYMISKRCKPTE 566


>gi|297834384|ref|XP_002885074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330914|gb|EFH61333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 517

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 189/440 (42%), Gaps = 50/440 (11%)

Query: 26  SPTSHNPHRPTRP-RFPTHLDAPYISSSARIICEILAH---ASSDDIESALACTGIIPTP 81
           +  +H  H    P +FP   +      SA  +  I+ H   +S ++IE  L   GI  T 
Sbjct: 49  NQATHFLHSLAAPDKFPNGFN-----QSAVDVHNIIKHHRGSSPEEIERILDKCGIQLTE 103

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           +LV EV+  +      A    R   +      S   +N ++DVLGK  RFE+    V  M
Sbjct: 104 ELVFEVVNRNRSDWKPAYILSRLIVKHSVYISSSLVYNEILDVLGKMRRFEEFHQVVDEM 163

Query: 140 -KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
            K DG +   T+  + + Y  A K DEAV  F+     G+E D+VA + LL  +CR ++ 
Sbjct: 164 SKRDGFVDEKTYEVLLNRYAAAHKVDEAVGVFERRREFGIEDDLVAFHGLLMWLCRYKHV 223

Query: 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
                 F +R ++    D  +  I+L GW   GNV EA + + +++   +  P+ V++Y 
Sbjct: 224 EFAETLFCSRRREF-GCDIRTMNIILNGWCVLGNVHEAKRIWKDIIAS-KCKPD-VVSYG 280

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
           T +  L +  ++ +A++  R +      P +K  +N +D L        A++++   M  
Sbjct: 281 TMINALTKKGKLGKAMELYRALWETGRNPDVKICNNVIDALCFKKRIPEALEVFK-EMSE 339

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE---------------------------- 350
            G  P+ +TYN + + L K +R  +V +   E                            
Sbjct: 340 KGPSPNVVTYNSLLKHLCKIRRTEKVWELVEEMEHKGGSCSPNDVTFGYLLKYSQRSKDV 399

Query: 351 ------MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
                 M KN+ + T         + +  D  E   EIW  +  +G+ P + +    + G
Sbjct: 400 DAVLERMAKNKCEMTSDLYNLMFRLYVQWDNEEKVREIWGEMERSGLGPDQRTYTIRIHG 459

Query: 405 LRNLGRLSDVRRFAEEMLNR 424
           L   G++ +   + +EM+++
Sbjct: 460 LHTKGKIGEALSYFQEMMSK 479


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 151/323 (46%), Gaps = 6/323 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +     +N++++ + K GR ++    +  M   G   ++ T   I  S C  G++ +
Sbjct: 223 KGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMD 282

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A      M   G    VV  N L++ +CRQ     RA++ L ++      P+  S+  LL
Sbjct: 283 AEKLLSDMLRKGCSPSVVTFNILINFLCRQ-GLLGRAIDILEKMPMHGCTPNSLSYNPLL 341

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ KE  ++ A +    MV R  + P+ ++ Y T L  L +  +VD A++ L  +  + 
Sbjct: 342 HGFCKEKKMDRAIEYLDIMVSRGCY-PD-IVTYNTLLTALCKDGKVDVAVEILNQLSSKG 399

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C P L  ++  +D L K+  +  A++L D  M   G  PD +TY+ +   L +  +V E 
Sbjct: 400 CSPVLITYNTVIDGLSKVGKTERAIKLLD-EMRRKGLKPDIITYSSLVSGLSREGKVDEA 458

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            KFFH++     +P  +   + +  L  + + + AI+   Y++     P EA+   L+ G
Sbjct: 459 IKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEG 518

Query: 405 LRNLGRLSDVRRFAEEMLNRRIL 427
           +   G   +      E+ +R ++
Sbjct: 519 IAYEGLAKEALDLLNELCSRGLV 541



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 148/331 (44%), Gaps = 42/331 (12%)

Query: 127 GRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G+ ++    + ++++ G +  + T+  +   YC +G+ D A+   D M+   V  DVV  
Sbjct: 106 GKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTY 162

Query: 186 NSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           N++L  +C    +  +A+E L+R ++K   PD  ++ IL+E   KE  V +A K   EM 
Sbjct: 163 NTILRTLC-DSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEM- 220

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL--------------- 289
            R + +   V+ Y   +  + +  ++DEA+KFL  M    C P +               
Sbjct: 221 -RNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 279

Query: 290 -----KFFSNAL-----------DILVK-LNDSTHAVQLWDIM--MVFHGAFPDSLTYNM 330
                K  S+ L           +IL+  L       +  DI+  M  HG  P+SL+YN 
Sbjct: 280 WMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNP 339

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +     K K++    ++   M+     P  +   T +T L    + ++A+EI N +   G
Sbjct: 340 LLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKG 399

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
             P+  + N ++ GL  +G+     +  +EM
Sbjct: 400 CSPVLITYNTVIDGLSKVGKTERAIKLLDEM 430



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 156/354 (44%), Gaps = 11/354 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++  L  +G+ +Q    + R ++++    + T+  + ++ C      +A+   D M
Sbjct: 161 TYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEM 220

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G + DVV  N L++ IC+ E +   A++FLN +      P+  +  I+L      G 
Sbjct: 221 RNKGSKPDVVTYNVLINGICK-EGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 279

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             +A K   +M+ R   +P  V+ +   +  L R   +  A+  L  M    C P    +
Sbjct: 280 WMDAEKLLSDML-RKGCSPS-VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSY 337

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  L    K      A++  DIM V  G +PD +TYN +   L K+ +V    +  +++ 
Sbjct: 338 NPLLHGFCKEKKMDRAIEYLDIM-VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLS 396

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P  +   T I  L    + E AI++ + +   G+ P   + + L+ GL   G++ 
Sbjct: 397 SKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVD 456

Query: 413 DVRRFAEEMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 462
           +  +F  ++    I    + Y   M  L K+   + R++  +   + +RCK ++
Sbjct: 457 EAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTD-RAIDFLAYMISKRCKPTE 509


>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
          Length = 447

 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 139/318 (43%), Gaps = 8/318 (2%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY---AWNLMVDVLGKNGRFEQMWNAV 136
           TP+LV+ VL+  ++    A+ FF +     R   +   +++L +D+  +      +W+ +
Sbjct: 49  TPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLI 108

Query: 137 RVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
             M+   +   P TFA + + Y  AGK D+AV  F  M  HG  QD+ + N++L  +C+ 
Sbjct: 109 HRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKS 168

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           + +  +A E    ++     D  ++ ++L GW       +  +   EMVER   NP ++ 
Sbjct: 169 K-RVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKTLEVLKEMVER-GINP-NLT 225

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y T L    R  Q+  A +F   MK  +C   +  ++  +       +   A  ++D  
Sbjct: 226 TYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFD-E 284

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           M+  G  P   TYN + + L K   V      F EM++  ++P        I  L  A E
Sbjct: 285 MIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGE 344

Query: 376 PEIAIEIWNYILENGILP 393
                E+   +   G  P
Sbjct: 345 FSRGEELMQRMENEGCEP 362



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 103/223 (46%), Gaps = 9/223 (4%)

Query: 205 FLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            ++R++ + + P   +FAI+ E +   G  ++A K F  M E   +  + + ++ T L  
Sbjct: 107 LIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCF--QDLASFNTILDV 164

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKF--FSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
           L + K+V++A +  R ++G     T+ +    N   ++ +   +   ++     MV  G 
Sbjct: 165 LCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKTLEVLK----EMVERGI 220

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            P+  TYN + +   +  ++    +FF EM K + +   +   T +     A E + A  
Sbjct: 221 NPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARN 280

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           +++ ++  G+LP  A+ N ++  L     + +     EEM+ R
Sbjct: 281 VFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRR 323



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 7/190 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDE 165
           RG   +   +N M+    + G+    W     MK+ D  + + T+ ++   +  AG+   
Sbjct: 218 RGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKR 277

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   FD M   GV   V   N+++  +C+++N  +  + F   V++  +P+  ++ +L+ 
Sbjct: 278 ARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIR 337

Query: 226 GWEKEGNVEEANKTFGEMVERF--EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           G    G          E+++R   E    +   Y   +       +V++AL     M   
Sbjct: 338 GLFHAGEFSRGE----ELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSG 393

Query: 284 NCFPTLKFFS 293
           +C P L  ++
Sbjct: 394 DCLPNLDTYN 403


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 162/383 (42%), Gaps = 49/383 (12%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVR 137
           TP  + + L+   D   S +D   WA +     P +  +  ++  LGK+G F  M   ++
Sbjct: 71  TPKQLRDALRRQSDE-DSILDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQ 129

Query: 138 VMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS---------------------- 174
            MK  G  +   TF  + +SY     +DEAV   D+M                       
Sbjct: 130 EMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDG 189

Query: 175 --------------MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
                           G++ DV   N L+ A+CR  +Q   A+  +  +    + PD  +
Sbjct: 190 NKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRA-HQIRPAILMMEEMGSYGLSPDEKT 248

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  L++G+ +EGN+  A +   +MV      P   +     +    +  +++E L F+  
Sbjct: 249 FTTLMQGFIEEGNMNGALRIREQMVA--AGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDE 306

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M  E   P    F++ ++ L ++    HA+++ D+M+   G  PD  TYN +   L K  
Sbjct: 307 MSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQ-EGFDPDIFTYNSLIFGLCKLG 365

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
            V E  +  ++MI  ++ P  +   T I+ L   ++ E A E+   +   GILP   + N
Sbjct: 366 EVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFN 425

Query: 400 ELLVGLRNLGRLSDVRRFAEEML 422
            L+ GL     L++  R A E+ 
Sbjct: 426 SLIQGL----CLTNNHRLAMELF 444



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 157/345 (45%), Gaps = 8/345 (2%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
           +  G R   + +N +V+ L + G  +     + VM ++G    + T+ S+    C  G+ 
Sbjct: 308 SNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEV 367

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIVDPDGDSFA 221
           +EAV   + M +     + V  N+L+S +C+ ENQ   A E L RV   K + PD  +F 
Sbjct: 368 EEAVEILNQMILRDFSPNTVTYNTLISTLCK-ENQVEEATE-LARVLTSKGILPDVCTFN 425

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++G     N   A + F EM  +   +P+    Y   + +L    +++EAL  L+ M+
Sbjct: 426 SLIQGLCLTNNHRLAMELFEEMKTK-GCHPDE-FTYNMLIDSLCSRGRLEEALSLLKEME 483

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
              C   +  ++  +D   K      A +++D  M   G   + +TYN + + L KN+RV
Sbjct: 484 SSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFD-EMELQGISRNVVTYNTLIDGLCKNRRV 542

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E  +   +M+    +P      + +T    A + + A +I   +  NG  P   +   L
Sbjct: 543 EEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTL 602

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446
           ++GL   GR+    R    +  + +++   T + + KA + E R+
Sbjct: 603 ILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRT 647



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 136/296 (45%), Gaps = 9/296 (3%)

Query: 132 MWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           M  A+R+ ++      P    T   +   YC  G+ +E +   D MS  G   D    NS
Sbjct: 262 MNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNS 321

Query: 188 LLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           L++ +CR       ALE L+  +++  DPD  ++  L+ G  K G VEEA +   +M+ R
Sbjct: 322 LVNGLCRI-GHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILR 380

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
            +++P  V  Y T + TL +  QV+EA +  RV+  +   P +  F++ +  L   N+  
Sbjct: 381 -DFSPNTV-TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHR 438

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            A++L++ M    G  PD  TYNM+ + L    R+ E      EM  +      +   T 
Sbjct: 439 LAMELFEEMKT-KGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTL 497

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
           I         E A EI++ +   GI     + N L+ GL    R+ +  +  ++ML
Sbjct: 498 IDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQML 553



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 132/316 (41%), Gaps = 12/316 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGAGKYDEAVMS 169
           + +N ++  L K G  E+   AV ++ +    D   +  T+ ++  + C   + +EA   
Sbjct: 352 FTYNSLIFGLCKLGEVEE---AVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATEL 408

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWE 228
             V++  G+  DV   NSL+  +C   N    A+E    +K K   PD  ++ +L++   
Sbjct: 409 ARVLTSKGILPDVCTFNSLIQGLCLTNNH-RLAMELFEEMKTKGCHPDEFTYNMLIDSLC 467

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
             G +EEA     EM         +V+ Y T +    + K+++EA +    M+ +     
Sbjct: 468 SRGRLEEALSLLKEM--ESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRN 525

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  ++  +D L K      A QL D  M+  G  PD  TYN +     +   + +     
Sbjct: 526 VVTYNTLIDGLCKNRRVEEAAQLMD-QMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIV 584

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
             M  N  +P  +   T I  L  A   E+A  +   +   G++    + N ++  L   
Sbjct: 585 QTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFRE 644

Query: 409 GRLSDVRRFAEEMLNR 424
            R S+  R   EM+ +
Sbjct: 645 KRTSEAVRLFREMMEK 660



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 73/195 (37%), Gaps = 1/195 (0%)

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P  V+ YE  L  L +        + L+ MK   C      F   ++   K      AV 
Sbjct: 103 PSSVI-YEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVA 161

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           + DIM    G   D+ TYN +   L+   ++  VE     M+    +P        I  L
Sbjct: 162 VVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKAL 221

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
             A +   AI +   +   G+ P E +   L+ G    G ++   R  E+M+        
Sbjct: 222 CRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSN 281

Query: 431 VTMHKLKKAFYNESR 445
           VT++ L   +  E R
Sbjct: 282 VTVNVLVHGYCKEGR 296



 Score = 39.3 bits (90), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 5/169 (2%)

Query: 259 TFLITL---IRGKQVDEALKFLRVMKGENCFPTLKFFSN-ALDILVKLNDSTHAVQLWDI 314
           TFLI +    + +  DEA+  + +M+ E       F  N  L++LV  N     V++ + 
Sbjct: 142 TFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGN-KLKLVEIVNS 200

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
            MV  G  PD  T+N++ + L +  ++        EM      P      T +   ++  
Sbjct: 201 RMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEG 260

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
               A+ I   ++  G      + N L+ G    GR+ +V  F +EM N
Sbjct: 261 NMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSN 309


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 168/346 (48%), Gaps = 14/346 (4%)

Query: 72  LACTGIIP---TPDLVHEVLQLSYDSPSSAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNG 127
           + C G +P   T  ++ + L  S D   +A+D +R A G+G ++  Y  +++++ L K G
Sbjct: 197 IKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEG 256

Query: 128 RFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           + E+    ++ + E G++     + +I + YC  G  D A+++ + M   G+  + +A N
Sbjct: 257 KVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFN 316

Query: 187 SLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           S++   C  +    +A E++ + V K + P  +++ IL++G+   G +   ++ F +++E
Sbjct: 317 SVIDKFCEMQ-MIDKAEEWVKKMVGKGIAPSVETYNILIDGY---GRLCVFSRCF-QILE 371

Query: 246 RFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
             E N E  +V++Y + +  L +  ++ EA   LR M G    P    ++  +D    + 
Sbjct: 372 EMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVG 431

Query: 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
               A++ +D  M  +G     +TYN + + L K  ++ E E+ F  +      P  +  
Sbjct: 432 KLREALRFFD-EMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITY 490

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
            + I+   +A   +  +E++  + + G+ P   + + L+ G    G
Sbjct: 491 NSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEG 536



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 156/386 (40%), Gaps = 51/386 (13%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFA 151
           A++ F    R +++ P  + +N+++  L K  R     +A ++  E  V +L     TF 
Sbjct: 85  AMELFETMKR-RKVVPNVFVYNVLIGGLCKEKRIR---DAEKLFGEMSVRNLVPNRVTFN 140

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK- 210
           ++ D YC AG+ D A+   + M    VE  ++  NSLLS +C+   +   A   LN +K 
Sbjct: 141 TLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKAR-RIEEARCMLNEIKC 199

Query: 211 ------------------------------------KIVDPDGDSFAILLEGWEKEGNVE 234
                                               K V  D  + +ILL G  KEG VE
Sbjct: 200 NGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVE 259

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A +    +VE     P  V+ Y T +    +   +D A+  +  M+     P    F++
Sbjct: 260 KAEEVLKSLVEH-GLVPGEVI-YNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNS 317

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +D   ++     A + W   MV  G  P   TYN++ +   +        +   EM +N
Sbjct: 318 VIDKFCEMQMIDKAEE-WVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEEN 376

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
             +P  ++  + I  L    +   A  +   ++  G+LP     N L+ G   +G+L + 
Sbjct: 377 GEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREA 436

Query: 415 RRFAEEMLNRRILIYEVTMHKLKKAF 440
            RF +EM    I    VT + L K  
Sbjct: 437 LRFFDEMSKNGIGATIVTYNSLIKGL 462



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 134/320 (41%), Gaps = 13/320 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G++ +  ++  +++ L K+G+  +    +R M   GVL +   +  + D  C  GK  EA
Sbjct: 377 GEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREA 436

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +  FD MS +G+   +V  NSL+  +C+          F         PD  ++  L+ G
Sbjct: 437 LRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISG 496

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF--LITLIRGKQVDEALKFLRVMKGEN 284
           +   GN ++  + + E +++    P       TF  LI+    + +         M   N
Sbjct: 497 YSNAGNSQKCLELY-ETMKKLGLKP----TINTFHPLISGCSKEGIKLKETLFNEMLQMN 551

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVH 342
             P  +   NA+  +    ++ H  + + +   MV  G  PD+ TYN +    +K  ++ 
Sbjct: 552 LSPD-RVVYNAM--IHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLS 608

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E +    +M      P     +  I    D  +   A   +  +LENG LP     NEL 
Sbjct: 609 ETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELS 668

Query: 403 VGLRNLGRLSDVRRFAEEML 422
            GLR  GRL + +    EM+
Sbjct: 669 TGLRKDGRLQEAQSICSEMI 688



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 1/159 (0%)

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
           +L+  K+ D  L   + M G    P    +  A+   VKL D   A++L++ M       
Sbjct: 40  SLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMK-RRKVV 98

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           P+   YN++   L K KR+ + EK F EM      P  +   T I     A E ++AI +
Sbjct: 99  PNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGL 158

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
              + +  + P   + N LL GL    R+ + R    E+
Sbjct: 159 RERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEI 197



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/363 (17%), Positives = 159/363 (43%), Gaps = 12/363 (3%)

Query: 65  SDDIESALACTGIIPTPDLVHEVLQLSY----DSPSSAVDFFRWAGRGQRLSPYAWNLMV 120
           ++++  +L   G++P  ++++  +   Y    D   + +   +   RG R +  A+N ++
Sbjct: 261 AEEVLKSLVEHGLVPG-EVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVI 319

Query: 121 DVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
           D   +    ++    V+ M   G+  S+ T+  + D Y     +       + M  +G +
Sbjct: 320 DKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEK 379

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
            +V++  SL++ +C+        +   + V + V P+ + + +L++G    G + EA + 
Sbjct: 380 PNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRF 439

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           F EM +        ++ Y + +  L +  ++ EA +   ++      P +  +++ +   
Sbjct: 440 FDEMSKN--GIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGY 497

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYN-MIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
               +S   ++L++ M    G  P   T++ +I  C  +  ++ E    F+EM++    P
Sbjct: 498 SNAGNSQKCLELYETMKKL-GLKPTINTFHPLISGCSKEGIKLKET--LFNEMLQMNLSP 554

Query: 359 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 418
             +     I    +    + A  +   +++ G+ P   + N L++G    G+LS+ +   
Sbjct: 555 DRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLV 614

Query: 419 EEM 421
           ++M
Sbjct: 615 DDM 617


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 128/278 (46%), Gaps = 8/278 (2%)

Query: 117 NLMVDVLGKNGRFEQMWNAVR-VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N ++D+L +  R EQ+    R +  +D   +  ++  +  + C  GK D+A  +   M+ 
Sbjct: 4   NALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAR 63

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
             +  DV   N ++  +C+   + SRA+EF    + + +PD  ++  LL G  K G V +
Sbjct: 64  EKLVPDVFTYNVVIDTLCKAR-RISRAIEFF---ETMPEPDVVTYNTLLGGLCKNGRVAQ 119

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A   FG M E     P  V  Y T +    +  Q + A   L++M    C PT+  + + 
Sbjct: 120 ACSLFGSM-EGAGITPSDV-TYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSI 177

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           ++ L K      A QL++ M +  G  PD +TYN +   L   +R+HE +     M++N 
Sbjct: 178 INGLCKNRKVDQAYQLFEEMKL-AGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENG 236

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           +QP  +     I  L   D  + A  ++  + + G  P
Sbjct: 237 FQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAP 274



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/342 (20%), Positives = 129/342 (37%), Gaps = 33/342 (9%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F    G G   S   +  ++DV  K  +FE  +  +++M       ++ ++ SI +  C 
Sbjct: 124 FGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCK 183

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             K D+A   F+ M + G + D V  N+L+  +C ++            V+    PD  +
Sbjct: 184 NRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKIT 243

Query: 220 FAILLEGWEKEGNVEEANKTFGEM-------------------------------VERFE 248
           F  L+EG      ++EA   F  M                               V  + 
Sbjct: 244 FTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYP 303

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             PE V+ Y      L R +  D A + L+ M      P +  ++     L    +   A
Sbjct: 304 ACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRA 363

Query: 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 368
            + +  M+   G  PD + YN++ +   K  R+   EK    M ++   P  +   T + 
Sbjct: 364 YREFRRMLE-QGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLVG 422

Query: 369 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
                 + E   E+ + ++  G  P  A+ + L+ GL  +G+
Sbjct: 423 HHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQ 464



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 91/233 (39%), Gaps = 7/233 (3%)

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
           V  N+LL  + R        + F     +   P+  S+  L++   + G +++A  T  E
Sbjct: 1   VTCNALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAE 60

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M  R +  P+ V  Y   + TL + +++  A++F   M      P +  ++  L  L K 
Sbjct: 61  MA-REKLVPD-VFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKN 114

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                A  L+   M   G  P  +TY  + +   K  +          M   +  PT  +
Sbjct: 115 GRVAQACSLFG-SMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYS 173

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
             + I  L    + + A +++  +   G  P   + N L+ GL    RL + +
Sbjct: 174 YCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAK 226



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 5/169 (2%)

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           + L+Y   +  L R  ++D+A   +  M  E   P +  ++  +D L K    + A++ +
Sbjct: 34  NALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFF 93

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
           + M       PD +TYN +   L KN RV +    F  M      P+ +   T I +   
Sbjct: 94  ETM-----PEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCK 148

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
             + E A  +   +      P   S   ++ GL    ++    +  EEM
Sbjct: 149 MCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEM 197


>gi|359491272|ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Vitis vinifera]
          Length = 450

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 157/329 (47%), Gaps = 13/329 (3%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP+LV  VL+L ++    A+ FF+        +    +++  +D+ G+   ++ +W  V 
Sbjct: 66  TPNLVDRVLKLLWNHGPKALQFFKSLDYHPTYAHVSSSFDHAIDIAGRLRDYKTLWTLVD 125

Query: 138 VMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
            M+   +   P TFA I + Y  AGK D A+  F  M  HG  QD+ + N++L  +C+  
Sbjct: 126 RMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFFSMHEHGCVQDLNSFNTILDVLCK-- 183

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
              S+ +E  +   K+       F ILL+G+ + G ++EA + F +M +R       V+ 
Sbjct: 184 ---SKRVEMAD--NKLFKVFRGRFRILLKGFFRAGQLKEAWEFFLQMKKR--KCEIDVVT 236

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           Y T +       +V +A +    M GE   P++  ++  + +L K ++  +A+ +++ M+
Sbjct: 237 YTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFEEML 296

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
              G  P+S TYN++   L    R+ +  +F   M  +E +P        I    DA+E 
Sbjct: 297 R-KGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEEI 355

Query: 377 EIAIEIWNYILENGILPLEASANELLVGL 405
           E  + ++  + +   LP   + N L+  +
Sbjct: 356 EKGLNVFEKMGDADCLPNLDTYNILISAM 384


>gi|293332689|ref|NP_001168961.1| hypothetical protein [Zea mays]
 gi|223974035|gb|ACN31205.1| unknown [Zea mays]
 gi|413921836|gb|AFW61768.1| hypothetical protein ZEAMMB73_696968 [Zea mays]
          Length = 521

 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 156/372 (41%), Gaps = 48/372 (12%)

Query: 87  VLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS 146
            L L Y    SAVD     G G    P AW+L V   GK  RF+  W  VR M+  GVL+
Sbjct: 112 ALALRYGDECSAVDGTD--GAGLPPPPEAWHLAVWAAGKARRFDLAWEIVRRMRNRGVLT 169

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEF 205
                 + + Y  A + ++A+ +FDVM    +E D     SLL A+C+ +N + +  L F
Sbjct: 170 CRVMVILMERYAAASEVNKAIKTFDVMEKFKIESDQSVFYSLLHALCKIKNIEDAEELLF 229

Query: 206 LNR--------------------------VKKI--------VDPDGDSFAILLEGWEKEG 231
           L +                           K++        + PDG S+ +++  + K G
Sbjct: 230 LRKKFFPLTAEGFNIILDGWCNVITDVAEAKRVWREMSNHCITPDGMSYTLMISCFSKVG 289

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ +  + + EM +R  W P  ++ Y + +  L R   V +A      +  E   P ++ 
Sbjct: 290 NLFDTLRVYDEMKKR-GWIP-GIVVYNSLVYVLTRENCVKDAHNIFSKLTDEGLQPDVET 347

Query: 292 FSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
           ++N   ++V L +S    +   +M  M+  G  P   TY+      +K + + E  K   
Sbjct: 348 YNN---MIVPLCESCKLDEARKVMESMILRGIVPTISTYH----AFLKQEGIDESLKLLQ 400

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           +M ++   P        I      +E   A+ +WN + +  I P+ A    L+ GL   G
Sbjct: 401 KMKEDGCGPKSDTFVMLIDKFFLLNESGNALRVWNEMRKYEISPVRAHYMTLVQGLVKHG 460

Query: 410 RLSDVRRFAEEM 421
            +     + +EM
Sbjct: 461 CIPRALEYYDEM 472


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 168/363 (46%), Gaps = 12/363 (3%)

Query: 64  SSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDF--FRWAGRGQRLSPY-AWNLMV 120
           S + IE AL       +P +V  +++   + P+S + F  F WA + +RL  + + N+++
Sbjct: 42  SVNPIEPALESKVPFLSPSIVTYIIK---NPPNSLLGFRFFIWASKFRRLRSWVSHNMII 98

Query: 121 DVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
           D+L K+  FE  W  ++ +K  G  +S   F  +  +Y      ++AV SF++M     +
Sbjct: 99  DMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCK 158

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANK 238
            DV   N++L  + R+E     AL   NR+ K+   P+  +F+IL++G  K G  + A +
Sbjct: 159 PDVFTYNTVLHVMVRKE-VVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQ 217

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
            F EM +R    P  +  Y   +  L + ++ D A +    MK   C P    ++  L  
Sbjct: 218 MFDEMTQR-RILPNKI-TYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHG 275

Query: 299 LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
             KL     A+ L            D   Y+ + + L + +R  + + ++ +M ++  +P
Sbjct: 276 FCKLGRVDEALGLLKYFEKDRYVL-DKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKP 334

Query: 359 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 418
             +     +  L  A + + A+ + N + E G++P     N L+ G  +LG L + +   
Sbjct: 335 DVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLH 394

Query: 419 EEM 421
            E+
Sbjct: 395 LEI 397



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 98/245 (40%), Gaps = 36/245 (14%)

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
            D+F +L++ + K   +E+A ++F EM++ F+  P+ V  Y T L  ++R + V  AL  
Sbjct: 126 ADAFTVLIQAYAKMDMIEKAVESF-EMMKDFDCKPD-VFTYNTVLHVMVRKEVVLLALGI 183

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD----------------------- 313
              M   NC P +  FS  +D + K   + +A+Q++D                       
Sbjct: 184 YNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQ 243

Query: 314 -----------IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                      I M  HG  PDS+TYN +     K  RV E         K+ +      
Sbjct: 244 AQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQG 303

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
            +  I  L  A   E A   +  + E+ I P       ++ GL   G+  D  R   EM 
Sbjct: 304 YSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMT 363

Query: 423 NRRIL 427
            R ++
Sbjct: 364 ERGLV 368



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 114/281 (40%), Gaps = 28/281 (9%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + +M+  L K G+F+     +  M E G++     + ++   YC  G  DEA      +S
Sbjct: 339 YTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEIS 398

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNV 233
            +           L+  +CR       A +  N ++K    P   +F  L++G+ K GN+
Sbjct: 399 KNDCFSSACTYTILICGMCR-SGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNI 457

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E+A   F +M      NP       +  + L +G         L+ M  + C   L    
Sbjct: 458 EKAQLLFYKM--EIGRNP-------SLFLRLSQGANRVLDTASLQTMVEQLCDSGLIL-- 506

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
            A +IL++L DS  A              P+ +TYN++     K   ++   K F E+  
Sbjct: 507 KAYNILMQLTDSGFA--------------PNIITYNILIHGFCKAGNINGAFKLFKELQL 552

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
               P  +   T I  LL A+  E A  + + IL+NG  P+
Sbjct: 553 KGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPI 593



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 138/330 (41%), Gaps = 19/330 (5%)

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           R++K + + ++ TF+ + D  C +GK   A+  FD M+   +  + +    ++S +C+ +
Sbjct: 186 RMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQ 245

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL- 255
                   F+        PD  ++  LL G+ K G V+EA    G +++ FE    +VL 
Sbjct: 246 KADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEA---LG-LLKYFE-KDRYVLD 300

Query: 256 --AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
              Y   +  L R ++ ++A  + R M   N  P +  ++  +  L K      A++L +
Sbjct: 301 KQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLN 360

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
             M   G  PD+  YN + +       + E +    E+ KN+   +       I  +  +
Sbjct: 361 -EMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRS 419

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 433
                A +I+N + ++G  P   + N L+ G    G +             ++L Y++ +
Sbjct: 420 GLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKA----------QLLFYKMEI 469

Query: 434 HKLKKAFYNESRSMRDIFDSLERRCKTSQM 463
            +    F   S+    + D+   +    Q+
Sbjct: 470 GRNPSLFLRLSQGANRVLDTASLQTMVEQL 499



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 40/225 (17%)

Query: 101 FFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYC 158
           F R + G  + L   +   MV+ L  +G   + +N +  + + G   ++ T+  +   +C
Sbjct: 476 FLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFC 535

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVA----VNSLLSA----------------------- 191
            AG  + A   F  + + G+  D V     +N LLSA                       
Sbjct: 536 KAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITE 595

Query: 192 --------ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
                    CR+   T     +L  ++ I   D +    + E +EK G VEEA +   EM
Sbjct: 596 VYKSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEVLKSVEENFEK-GEVEEAVRGLLEM 654

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
              F+ N   +  Y  +LI L +  +++EALK    ++  N   T
Sbjct: 655 --DFKLNDFQLAPYTIWLIGLCQAGRLEEALKIFFTLEEHNVLVT 697


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 158/354 (44%), Gaps = 29/354 (8%)

Query: 97  SAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFAS 152
           +A+D  R   +  G   +P  +N  V  L K+G+  +    V+ MK DG     + TF +
Sbjct: 36  AAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMK-DGACKPDVVTFNT 94

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           +    C AG+ DEA    D M   G   ++V  N+L++ +     ++  A+  +  +   
Sbjct: 95  LIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGL-SSAGRSGEAVLVMQGM--T 151

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PD  ++  ++ G+ K G ++ A     EM +R   +P+    Y   +  L +   + +
Sbjct: 152 TTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD-TFTYSILINGLCKSSNLRK 210

Query: 273 ALKFLRVMKG-ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           A + L+ M G ++C  ++  F+  +D   K  D   A +L   M+  HG  PD +TY+ I
Sbjct: 211 ADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLE-HGCAPDVVTYSTI 269

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
            + L +   V +      +M+    +P  +     +T L  A +   A  +   +LE+G 
Sbjct: 270 IDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGC 329

Query: 392 LPLEAS----------------ANELLVGLRNLGRLSDVRRFAEEMLN--RRIL 427
            P   +                AN+LL  +R+ GR++DV  F   +L+  +R+L
Sbjct: 330 TPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALLLSVKKRLL 383



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 131/298 (43%), Gaps = 13/298 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           T+  +  ++C AG+   A+     M    G+       N  + A+C+   +   A+E + 
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKS-GKVPEAMEVVK 78

Query: 208 RVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
            +K     PD  +F  L+ G  K G ++EA +   EM ER  +   +++ Y T +  L  
Sbjct: 79  NMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEM-ERSGF-AANLVTYNTLINGLSS 136

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
             +  EA+    VM+G    P  + ++  +    K  +   A    + M    G  PD+ 
Sbjct: 137 AGRSGEAV---LVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTF 193

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMI-KNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           TY+++   L K+  + + ++   EMI + +   + +   T +     A + + A E+ + 
Sbjct: 194 TYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSS 253

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA 439
           +LE+G  P   + + ++ GL   G +       E+M++R     ++ Y V +  L KA
Sbjct: 254 MLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKA 311


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 150/340 (44%), Gaps = 18/340 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  +VD L ++G+ ++    VR MK  GV     TF+++   +C A K DEA+  +  + 
Sbjct: 84  YTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEIL 143

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKE 230
                 D V+ ++L++ +CR E +   A E    ++   D    PD  ++  L++G+ K 
Sbjct: 144 TSSCRLDAVSSSALITGLCR-ERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKS 202

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN+E+A K  G M  R +  P +V+ Y + L  L +   +D+AL   R M  + C P + 
Sbjct: 203 GNLEKAMKMLGVMEGR-KCVP-NVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVV 260

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            ++  +  L   +    A  L D  M       D+++YN + +   +  R+ E ++ F E
Sbjct: 261 TYTTLIHGLCAAHKVDAARLLMD-EMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKE 319

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN-----GILPLEASANELLVGL 405
           M      P  +     +    +A   E A     ++LEN     GI P   + + ++ G 
Sbjct: 320 MAAKSCLPDRITYTCLVRGFCNASRLEEA----RFLLENMKTAAGIDPDVVTYSIVVAGY 375

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
               R  +   F +EM+ R +    VT   L        R
Sbjct: 376 SRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGR 415



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 152/371 (40%), Gaps = 79/371 (21%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYCGAGKYDEAV-MSFDV 172
           +N++V+ L K     + +  ++ M++   ++  L T++++ + +C  G+ D A  +  ++
Sbjct: 12  YNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREM 71

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           ++  G+  DVV   S++  +CR + +  RA E +  +K K V+PD  +F+ L+ GW    
Sbjct: 72  VTRDGMAPDVVTYTSVVDGLCR-DGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNAR 130

Query: 232 NVEEANKTF----------------------------GEMVERFE---------WNPEHV 254
            V+EA K +                            GE  E F+         W P+ V
Sbjct: 131 KVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPD-V 189

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           + Y   +    +   +++A+K L VM+G  C P +  +S+ L  L K  D   A+ L+  
Sbjct: 190 VTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFR- 248

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
            M   G  P+ +TY  +   L    +V        EM           C  A T+     
Sbjct: 249 RMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTA--------TCCPADTV----- 295

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
                                 S N LL G   LGR+ + ++  +EM  +  L   +T  
Sbjct: 296 ----------------------SYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYT 333

Query: 435 KLKKAFYNESR 445
            L + F N SR
Sbjct: 334 CLVRGFCNASR 344



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 126/307 (41%), Gaps = 9/307 (2%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G++  P    ++ ++  L K G  +Q  +  R M   G + ++ T+ ++    C A K D
Sbjct: 217 GRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVD 276

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            A +  D M+      D V+ N+LL   CR          F     K   PD  ++  L+
Sbjct: 277 AARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLV 336

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+     +EEA      M      +P+ V+ Y   +    R K+  EA +F++ M   N
Sbjct: 337 RGFCNASRLEEARFLLENMKTAAGIDPD-VVTYSIVVAGYSRAKRFVEAAEFIQEMIARN 395

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P    +S+ +D L K     HA+++       +   PD +TY ++ E L    R  E 
Sbjct: 396 VAPNAVTYSSLIDGLCKAGRVNHAMEVLK-----NVDKPDVVTYTIVIEGLCGTDRTEEA 450

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
                EM+    +P+     + I  L    + + A ++   +  +G+ P   +   LL G
Sbjct: 451 LTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEG 510

Query: 405 LRNLGRL 411
               GR+
Sbjct: 511 FSRTGRM 517



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 124/291 (42%), Gaps = 10/291 (3%)

Query: 139 MKEDGVLS--LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           M+EDG     + T+ ++ D +C +G  ++A+    VM       +VV  +SLL  +C+  
Sbjct: 179 MREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKA- 237

Query: 197 NQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
               +AL+   R+  K   P+  ++  L+ G      V+ A     EM       P   +
Sbjct: 238 GDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTA--TCCPADTV 295

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           +Y   L    R  +++EA +  + M  ++C P    ++  +      +    A  L + M
Sbjct: 296 SYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENM 355

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
               G  PD +TY+++     + KR  E  +F  EMI     P  +  ++ I  L  A  
Sbjct: 356 KTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGR 415

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
              A+E    +L+N   P   +   ++ GL    R  +     EEM+N+R+
Sbjct: 416 VNHAME----VLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRV 462



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 124/282 (43%), Gaps = 14/282 (4%)

Query: 186 NSLLSAICRQENQTSRALEFLNRVK--KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           N +++ +C+    TS+A E L  ++  K V PD  +++ ++ G+ K+G ++ A +   EM
Sbjct: 13  NVVVNGLCKA-RLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREM 71

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           V R    P+ V+ Y + +  L R  ++D A + +R MK +   P    FS  +       
Sbjct: 72  VTRDGMAPD-VVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNAR 130

Query: 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE---WQPTP 360
               A++L+  ++       D+++ + +   L + +R+ E  + F EM   E   W+P  
Sbjct: 131 KVDEALKLYKEILTSSCRL-DAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDV 189

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV----RR 416
           +     I     +   E A+++   +     +P   + + LL GL   G L       RR
Sbjct: 190 VTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRR 249

Query: 417 FAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRC 458
              +     ++ Y   +H L  A  ++  + R + D +   C
Sbjct: 250 MTSKGCVPNVVTYTTLIHGLCAA--HKVDAARLLMDEMTATC 289



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 92/203 (45%), Gaps = 12/203 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           ++ ++D L K GR     +A+ V+K      + T+  + +  CG  + +EA+   + M  
Sbjct: 403 YSSLIDGLCKAGRVN---HAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVN 459

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
             VE  V   NS++ A+CR  +        +      ++P   ++  LLEG+ + G +E 
Sbjct: 460 KRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEI 519

Query: 236 ANKTFGEMVERFEWN-------PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           A + F  M  + + +       PE   A+   +  L + +++D+A+  +  ++   C P 
Sbjct: 520 AYELFEVMRRKAKKSSSAANLVPEQ--AFSALIRGLCKAREIDKAMAVVEELRSRECEPA 577

Query: 289 LKFFSNALDILVKLNDSTHAVQL 311
            +     +D L++   +  A +L
Sbjct: 578 EEDCLAIVDGLLRAGRTEEAGKL 600


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 148/347 (42%), Gaps = 37/347 (10%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           RG   +P    +N +V    + G  +     V VM+E GV  SL TF ++ +  C AG+ 
Sbjct: 182 RGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRM 241

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           ++A   FD M+  G+  D V+ N+L+S  C+          F    +K V PD  +F  L
Sbjct: 242 EDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSL 301

Query: 224 LEGWEKEGNVEEANKTFGEMVER------FEWNP-------------------------- 251
           +    + GN+E A    G+M ER      F +                            
Sbjct: 302 IHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRI 361

Query: 252 -EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
              V+ Y   +    +  ++DEA + +  M+ +   P +  +S  L    K+ D+  A +
Sbjct: 362 QPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFE 421

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           L +  M+  G  PD++TY+ +   L + +R+ +  + F +M++   QP      T I   
Sbjct: 422 L-NRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGH 480

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
                 + A+ + + +++ G+LP   + + L+ GL    R  + +R 
Sbjct: 481 CKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRL 527



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 132/322 (40%), Gaps = 40/322 (12%)

Query: 139 MKEDGVL-SLPTFASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQ- 195
           M  DGV  ++ T+  +  + C  G+ +EA+ +  D M   G   +VV  N+L++A CR  
Sbjct: 145 MLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAG 204

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           E   +  L  + R +  V P   +F  ++ G  K G +E+A K F EM  R    P+ V 
Sbjct: 205 EVDAAERLVGVMR-EGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMA-REGLTPDGV- 261

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           +Y T +    +   + EAL     M  +   P +  F++ +  + +  +   AV L   M
Sbjct: 262 SYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQM 321

Query: 316 ------------------MVFHGAFPDSL----------------TYNMIFECLIKNKRV 341
                                +G   D+L                 YN++     K  R+
Sbjct: 322 RERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRM 381

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E  +  HEM     +P  +  +T ++      + + A E+   +L+ G++P   + + L
Sbjct: 382 DEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSL 441

Query: 402 LVGLRNLGRLSDVRRFAEEMLN 423
           + GL    RL D     E+ML 
Sbjct: 442 IRGLCEERRLGDACELFEKMLQ 463



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 99/264 (37%), Gaps = 38/264 (14%)

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G    ++A N++L A+      ++R L   + ++  V P+  ++ IL+      G  EEA
Sbjct: 115 GYAPSLLAYNAVLLALSDASLPSARRL-LASMLRDGVAPNVYTYNILVRALCARGQREEA 173

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
               G+ +      P +V+ Y T +    R  +VD A + + VM+     P+L       
Sbjct: 174 LGVVGDDMRGAGCAP-NVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSL------- 225

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
                                        +T+N +   L K  R+ +  K F EM +   
Sbjct: 226 -----------------------------VTFNTVVNGLCKAGRMEDARKMFDEMAREGL 256

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
            P  ++  T ++    A     A+ ++  + + G++P   +   L+  +   G L     
Sbjct: 257 TPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVA 316

Query: 417 FAEEMLNRRILIYEVTMHKLKKAF 440
              +M  R + + E T   L   F
Sbjct: 317 LVGQMRERGLRMNEFTFTALIDGF 340


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 140/290 (48%), Gaps = 5/290 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           + N++VD L K G+  +  + V +M + GV   + T+A++ D +C   + DEAV  FD+M
Sbjct: 233 SLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMM 292

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             +G   +VV+ N+L++  C+ +        F    ++ + P+  +++ L+ G    G +
Sbjct: 293 VRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRL 352

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A   F EMV   +    +++ Y   L  L +  ++ EA+  L+ ++G N  P ++ ++
Sbjct: 353 QDAIALFNEMVACGQI--PNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYN 410

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
            A+D + +  D   A  L+   +   G  PD  T+N++   L K   + E  K F EM +
Sbjct: 411 IAIDGMCRAGDLEAARDLFS-NLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDE 469

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
           N          T    LL  ++   AI++   +L  G    + S   LLV
Sbjct: 470 NGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARG-FSADVSTTALLV 518



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 139/313 (44%), Gaps = 9/313 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++    C  GK  EA+  FD M   G + +VV   +L++ +C+    T     F   
Sbjct: 128 TFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEM 187

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K + PD  ++  L+         +       EMV+  +  P +V++    +  L +  
Sbjct: 188 IAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKS-KIMP-NVVSLNIVVDALCKEG 245

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +V EA   + +M      P +  ++  +D     ++   AV+++D MMV +G   + ++Y
Sbjct: 246 KVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFD-MMVRNGCVCNVVSY 304

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N +     K +R+ +    F EM + E  P  +  +T I  L      + AI ++N ++ 
Sbjct: 305 NTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVA 364

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNES 444
            G +P   + + LL  L    RL++     + +    L+  + +Y + +  + +A   + 
Sbjct: 365 CGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRA--GDL 422

Query: 445 RSMRDIFDSLERR 457
            + RD+F +L  R
Sbjct: 423 EAARDLFSNLAPR 435



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 118/293 (40%), Gaps = 44/293 (15%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T   + +S+C   + D A+                   S+L+ I +  +Q          
Sbjct: 93  TLTIVINSFCHLNRVDFAL-------------------SVLAKILKLGHQ---------- 123

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRG 267
                 PD  +F  L+ G    G + EA   F +MV E F+ N   V+ Y T +  L + 
Sbjct: 124 ------PDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPN---VVTYGTLMNGLCKD 174

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           +Q+ EAL     M  +   P +  +++ +  L  L +  H   L +  MV     P+ ++
Sbjct: 175 RQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLN-EMVKSKIMPNVVS 233

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
            N++ + L K  +V E       MI+   +P  +  A  +       E + A+++++ ++
Sbjct: 234 LNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMV 293

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKL 436
            NG +    S N L+ G   + R+       EEM  + +    + Y   +H L
Sbjct: 294 RNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGL 346



 Score = 42.0 bits (97), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 37/195 (18%), Positives = 78/195 (40%), Gaps = 1/195 (0%)

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P  +  +   L ++ + K     L   + M      P +   +  ++    LN    A+ 
Sbjct: 53  PPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALS 112

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           +   ++   G  PD+ T+  +   L    ++ E    F +M+   +QP  +   T +  L
Sbjct: 113 VLAKILKL-GHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGL 171

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
               +   A+ +++ ++  GI P   + N L+  L NL     V     EM+  +I+   
Sbjct: 172 CKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNV 231

Query: 431 VTMHKLKKAFYNESR 445
           V+++ +  A   E +
Sbjct: 232 VSLNIVVDALCKEGK 246


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 143/307 (46%), Gaps = 12/307 (3%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           R    G + +   +  ++ V+ K+G+       +R M+E  + L    ++ I D  C  G
Sbjct: 202 RMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDG 261

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D A   F+ M + G + D++   +L+   C        A    + +K+ + PD  +F+
Sbjct: 262 SLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFS 321

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++ + KEG + EA +   EM++R   +P+ V  Y + +    +  Q+D+A   L +M 
Sbjct: 322 ALIDCFVKEGKLREAEELHKEMIQR-GISPDTV-TYTSLIDGFCKENQLDKANHMLDLMV 379

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            + C P ++ F+  ++   K N     ++L+   M   G   D++TYN + +   +  ++
Sbjct: 380 SKGCGPNIRTFNILINGYCKANLIDDGLELFR-KMSLRGVVADTVTYNTLIQGFCELGKL 438

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
              ++ F EM+    +P  ++    +  L D  EPE A+EI+  I        E S  EL
Sbjct: 439 EVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI--------EKSKMEL 490

Query: 402 LVGLRNL 408
            +G+ N+
Sbjct: 491 DIGIYNI 497



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 157/349 (44%), Gaps = 14/349 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++ +++ L   GR  +    V  M E G   +L T  ++ +  C  GK  +AV+  D M
Sbjct: 144 TFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRM 203

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G + + V    +L  +C+   QT+ A+E L +++ + +  D   ++I+++G  K+G+
Sbjct: 204 VETGFQPNEVTYGPVLKVMCKS-GQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262

Query: 233 VEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           ++ A   F EM ++ F+ +   ++ Y T +       + D+  K LR M      P +  
Sbjct: 263 LDNAFNLFNEMEIKGFKAD---IIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           FS  +D  VK      A +L    M+  G  PD++TY  + +   K  ++ +       M
Sbjct: 320 FSALIDCFVKEGKLREAEELHK-EMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM 378

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +     P        I     A+  +  +E++  +   G++    + N L+ G   LG+L
Sbjct: 379 VSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 438

Query: 412 SDVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
              +   +EM++RR    I+ Y++ +  L      E     +IF+ +E+
Sbjct: 439 EVAKELFQEMVSRRVRPDIVSYKILLDGL--CDNGEPEKALEIFEKIEK 485



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 128/309 (41%), Gaps = 23/309 (7%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L  F+ +F       +YD  +     M + G+  ++  ++ +++  CR   + S A   +
Sbjct: 72  LIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCR-KLSLAFSAM 130

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL- 264
            ++ K+  +PD  +F+ L+ G   EG V EA +    MVE         + ++  LITL 
Sbjct: 131 GKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVE---------MGHKPTLITLN 181

Query: 265 -------IRGKQVDEALKFLRVMKGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
                  + GK  D  L   R++  E  F P    +   L ++ K   +  A++L   M 
Sbjct: 182 ALVNGLCLNGKVSDAVLLIDRMV--ETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKME 239

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
                  D++ Y++I + L K+  +      F+EM    ++   +   T I     A   
Sbjct: 240 ERKIKL-DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           +   ++   +++  I P   + + L+      G+L +     +EM+ R I    VT   L
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSL 358

Query: 437 KKAFYNESR 445
              F  E++
Sbjct: 359 IDGFCKENQ 367



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 61/313 (19%), Positives = 123/313 (39%), Gaps = 29/313 (9%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F + + RG       +N ++    + G+ E      + M    V   + ++  + D  C 
Sbjct: 410 FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCD 469

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G+ ++A+  F+ +    +E D+   N ++  +C           F +   K V PD  +
Sbjct: 470 NGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKT 529

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + I++ G  K+G++ EA+  F +M E  + +  +   Y   +   +      ++ K +  
Sbjct: 530 YNIMIGGLCKKGSLSEADLLFRKMEE--DGHSPNGCTYNILIRAHLGEGDATKSAKLIEE 587

Query: 280 MKGENC-----FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE- 333
           +K   C       TL+F   AL  L ++  + H               PD  T+  +   
Sbjct: 588 IK--RCGFSVDASTLRF---ALSTLARMLKAGHE--------------PDVFTFTTLLRP 628

Query: 334 -CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
            CL +N  V++    F  M    ++P  +   T I  LL+ +       + + + E G  
Sbjct: 629 FCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQ 688

Query: 393 PLEASANELLVGL 405
           P   + +  + GL
Sbjct: 689 PNAVTKSTFISGL 701


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 158/354 (44%), Gaps = 29/354 (8%)

Query: 97  SAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFAS 152
           +A+D  R   +  G   +P  +N  V  L K+G+  +    V+ MK DG     + TF +
Sbjct: 36  AAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMK-DGACKPDVVTFNT 94

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           +    C AG+ DEA    D M   G   ++V  N+L++ +     ++  A+  +  +   
Sbjct: 95  LIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGL-SSAGRSGEAVLVMQGM--T 151

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PD  ++  ++ G+ K G ++ A     EM +R   +P+    Y   +  L +   + +
Sbjct: 152 TTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPD-TFTYSILINGLCKSSNLRK 210

Query: 273 ALKFLRVMKG-ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           A + L+ M G ++C  ++  F+  +D   K  D   A +L   M+  HG  PD +TY+ I
Sbjct: 211 ADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLE-HGCAPDVVTYSTI 269

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
            + L +   V +      +M+    +P  +     +T L  A +   A  +   +LE+G 
Sbjct: 270 IDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGC 329

Query: 392 LPLEAS----------------ANELLVGLRNLGRLSDVRRFAEEMLN--RRIL 427
            P   +                AN+LL  +R+ GR++DV  F   +L+  +R+L
Sbjct: 330 TPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLLLSVKKRLL 383



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 131/298 (43%), Gaps = 13/298 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           T+  +  ++C AG+   A+     M    G+       N  + A+C+   +   A+E + 
Sbjct: 20  TYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKS-GKVPEAMEVVK 78

Query: 208 RVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
            +K     PD  +F  L+ G  K G ++EA +   EM ER  +   +++ Y T +  L  
Sbjct: 79  NMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEM-ERSGF-AANLVTYNTLINGLSS 136

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
             +  EA+    VM+G    P  + ++  +    K  +   A    + M    G  PD+ 
Sbjct: 137 AGRSGEAV---LVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTF 193

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMI-KNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           TY+++   L K+  + + ++   EMI + +   + +   T +     A + + A E+ + 
Sbjct: 194 TYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSS 253

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA 439
           +LE+G  P   + + ++ GL   G +       E+M++R     ++ Y V +  L KA
Sbjct: 254 MLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKA 311


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 151/320 (47%), Gaps = 12/320 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +  N +VD L K G   +  + V +M   GV  ++ T+ ++ D +C   + D AV  FD 
Sbjct: 281 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDT 340

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M       +V++ N+L++  C+ ++       F    ++ + P+  ++  L+ G    G 
Sbjct: 341 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 400

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A   F EMV R +  P+ ++ Y T    L + + +D+A+  L+ ++G N  P ++ +
Sbjct: 401 LQDAISLFHEMVARGQI-PD-LVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIY 458

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  LD + +  +   A  L+   +   G  P+  TYN++   L K   + E  K F EM 
Sbjct: 459 TTILDGMCRAGELEDARDLFS-NLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMN 517

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           KN   P            L  +E    IE+   +L  G   ++ S   LLVG+     LS
Sbjct: 518 KNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARG-FSVDVSTTTLLVGM-----LS 571

Query: 413 D--VRRFAEEMLNRRILIYE 430
           D  + +  +++L + +++YE
Sbjct: 572 DDGLDQSVKQILCKIVILYE 591



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 9/239 (3%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-DPDGDSFAILLEGWEKEG 231
           M   G+  DV  +  +++++C   N+   A   L ++ K+   PD  +F  L+ G   EG
Sbjct: 96  MDSFGIPPDVYTLAIVINSLCHL-NRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEG 154

Query: 232 NVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            + EA   F +M+ E F+ N   V+ Y T +  L +      A++ LR M+  NC P + 
Sbjct: 155 KIGEALHLFDKMIGEGFQPN---VVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVV 211

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            FS  +D L K    T A  ++   M+  G  P+ +TYN +   L K      V    +E
Sbjct: 212 VFSTLIDSLCKDRQVTEAFNIFS-EMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNE 270

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG--LRN 407
           M+ ++  P      T +  L        A ++ + ++  G+ P   + N L+ G  LRN
Sbjct: 271 MVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRN 329



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/358 (20%), Positives = 158/358 (44%), Gaps = 7/358 (1%)

Query: 96  SSAVDFFRWAGRGQ-RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           S+A+   R   +G  + +   ++ ++D L K+ +  + +N    M   G+  ++ T+ S+
Sbjct: 192 SAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSL 251

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKI 212
               C   ++       + M    +  DV  +N+++ A+C+ E   + A + ++  + + 
Sbjct: 252 IHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCK-EGMVAEAHDVVDMMIHRG 310

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V+P+  ++  L++G      V+ A K F  MV +      +V++Y T +    + + VD+
Sbjct: 311 VEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHK--DCVANVISYNTLINGYCKIQSVDK 368

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A+     M  +   P    ++  +  L  +     A+ L+   MV  G  PD +TY  + 
Sbjct: 369 AMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFH-EMVARGQIPDLVTYRTLS 427

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
           + L KN+ + +       +  + W P      T +  +  A E E A ++++ +   G+ 
Sbjct: 428 DYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQ 487

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 450
           P   + N ++ GL   G L++  +   EM        + T + + + F   + ++R I
Sbjct: 488 PNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 545



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 113/301 (37%), Gaps = 50/301 (16%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT-----SRALEFLNRVKKIVDPDGD 218
           DEA+ +F+ M         V  N LL++I + ++ +     SR ++        + PD  
Sbjct: 52  DEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFG-----IPPDVY 106

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           + AI++        V+ A     +++ +    P+      T   TLIRG  V+  +    
Sbjct: 107 TLAIVINSLCHLNRVDFAFSALAKIL-KLGHQPD-----ATTFTTLIRGLCVEGKI---- 156

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
              GE                        A+ L+D  M+  G  P+ +TY  +   L K 
Sbjct: 157 ---GE------------------------ALHLFD-KMIGEGFQPNVVTYGTLINGLCKV 188

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
                  +    M +   QP  +  +T I  L    +   A  I++ ++  GI P   + 
Sbjct: 189 GNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTY 248

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES--RSMRDIFDSLER 456
           N L+ GL  L     V     EM++ +I+    T++ +  A   E       D+ D +  
Sbjct: 249 NSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIH 308

Query: 457 R 457
           R
Sbjct: 309 R 309



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/177 (18%), Positives = 75/177 (42%), Gaps = 6/177 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCG 159
           F     RGQ      +  + D L KN   ++    ++ ++       +  + +I D  C 
Sbjct: 408 FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCR 467

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           AG+ ++A   F  +S  G++ +V   N ++  +C+Q      +  F    K    P+  +
Sbjct: 468 AGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCT 527

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALK 275
           + ++  G+ +        +   EM+ R F  +    ++  T L+ ++    +D+++K
Sbjct: 528 YNLITRGFLRNNEALRTIELLEEMLARGFSVD----VSTTTLLVGMLSDDGLDQSVK 580


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 101/452 (22%), Positives = 180/452 (39%), Gaps = 80/452 (17%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPD-LVHEVLQLSYDSPSSAVDFFRWAGR 107
           +   A +I ++ A   + D    LA +G    PD +V+  +   Y   +  +D  R    
Sbjct: 104 VGPCAALIKKLCASGRTADARRVLAASG----PDVMVYNAMVAGYCG-AGQLDAARRLVA 158

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
              + P  Y +N ++  L   GR       +  M   G L  + T+  + ++ C    Y 
Sbjct: 159 DMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYK 218

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAIL 223
           +A+   D M   G   D+V  N +L+ IC QE +   A+EFL  +     +P+  S+ I+
Sbjct: 219 QAMKLLDEMHDKGCAPDIVTYNVVLNGIC-QEGRVEDAMEFLKNLPSYGCEPNTVSYNIV 277

Query: 224 LEG------WE-----------------------------KEGNVEEANKTFGEMVE--- 245
           L+G      WE                             + G VE A +   +M +   
Sbjct: 278 LKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGC 337

Query: 246 ---RFEWNP---------------------------EHVLAYETFLITLIRGKQVDEALK 275
                 +NP                             +++Y T L  L R  +VD A++
Sbjct: 338 TPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIE 397

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
            L  +K + C P L  ++  +D L K   +  A++L D  M   G  PD +TY+ I   L
Sbjct: 398 LLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLD-EMTSKGLQPDIITYSTIASGL 456

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
            +  R+ E  + F ++     +PT       +  L    E   AI+++ Y++ +G +P E
Sbjct: 457 CREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNE 516

Query: 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           ++   L+ GL   G + + R    ++ +R ++
Sbjct: 517 STYTILVEGLAYEGLVKEARELFAQLCSRGVV 548



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 146/316 (46%), Gaps = 9/316 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++    CG G+   A+   + M   G   DVV    LL A C++     +A++ L+ 
Sbjct: 168 TYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGY-KQAMKLLDE 226

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +  K   PD  ++ ++L G  +EG VE+A + F + +  +   P  V +Y   L  L   
Sbjct: 227 MHDKGCAPDIVTYNVVLNGICQEGRVEDAME-FLKNLPSYGCEPNTV-SYNIVLKGLFTA 284

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           ++ ++A K +  M  + C P +  F+  +  L +      A+++ +  M  +G  P+SL+
Sbjct: 285 ERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLE-QMPQYGCTPNSLS 343

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +     K K++H+  +F   M+     P  ++  T +T L    E ++AIE+ + + 
Sbjct: 344 YNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLK 403

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
           + G  P+  S N ++ GL   G+  +     +EM ++ +    +T   +      E R  
Sbjct: 404 DKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDR-- 461

Query: 448 RDIFDSLERRCKTSQM 463
             I +++   CK   M
Sbjct: 462 --IEEAVRTFCKVQDM 475


>gi|224093900|ref|XP_002310039.1| predicted protein [Populus trichocarpa]
 gi|222852942|gb|EEE90489.1| predicted protein [Populus trichocarpa]
          Length = 507

 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 108/473 (22%), Positives = 200/473 (42%), Gaps = 72/473 (15%)

Query: 13  KNKIIPSSS----STTTSPTSHNPHRPTRPRFPTHLDAPY--ISSSARIICEILAHASSD 66
           K++ + SS     S  T+P +HN            +DA Y  IS+S           SS 
Sbjct: 15  KSRYVSSSKIPFLSLHTNPQNHNNK-------DIQVDAIYNIISNST----------SSQ 57

Query: 67  DIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVD 121
           +++ +L  TG+  + DL+ +VL+    S+ +P  A+DFF +    RG   S Y+ + M+ 
Sbjct: 58  NLKQSLKSTGVFLSNDLIDKVLKRVRFSHGNPLQALDFFNFTADRRGFYHSSYSLDTMLY 117

Query: 122 VLGKNGRFEQMWNA-VRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
           +LG++ +F+ +W+  + + ++D  L  P T   +             V SF         
Sbjct: 118 ILGRSRKFDHIWDVLIDIKRKDRNLITPRTLQVVLGRVAKVCSVRMTVESFWKFKRLVPV 177

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
            D    N+LL  +C QE   S A    + +KK   P+  +F ILL GW+     EEA   
Sbjct: 178 FDTSCFNALLRTLC-QEKSMSDARNVYHHLKKGFRPNLQTFNILLSGWKSS---EEAELF 233

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           + EM E     P+ ++ Y + +    +G+++++A   +  M+ E+  P +  +++ +  L
Sbjct: 234 YEEMKE-LGVKPD-IVTYNSLIDVFCKGRELEKAYGVVARMREEDILPDVITYTSIIGGL 291

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM-------- 351
             +     A  +   M   HG +PD   YN +       KR+        EM        
Sbjct: 292 GLVGQPDKARDMLKEMKE-HGCYPDVAAYNAVIRNYCIAKRLDAAYSLMAEMESKGMSPN 350

Query: 352 ----------------IKNEWQ-----------PTPLNCATAITMLLDADEPEIAIEIWN 384
                           ++N W            P   +C   I +    ++ E+A+++WN
Sbjct: 351 ATSYNLFFRVFSWSNDLRNSWDFYGRMMDAGCLPNTQSCMFLIKLFKRHEKVEMALQLWN 410

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437
            ++E G       ++ LL  L ++G+L +  +   +M+ +      V+  ++K
Sbjct: 411 DMVEKGFGSYILVSDVLLGMLCDMGKLVEAEKCFLQMVEKGHKPSNVSFRRIK 463


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 143/307 (46%), Gaps = 12/307 (3%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           R    G + +   +  ++ V+ K+G+       +R M+E  + L    ++ I D  C  G
Sbjct: 202 RMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDG 261

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D A   F+ M + G + D++   +L+   C        A    + +K+ + PD  +F+
Sbjct: 262 SLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFS 321

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++ + KEG + EA +   EM++R   +P+ V  Y + +    +  Q+D+A   L +M 
Sbjct: 322 ALIDCFVKEGKLREAEELHKEMIQR-GISPDTV-TYTSLIDGFCKENQLDKANHMLDLMV 379

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            + C P ++ F+  ++   K N     ++L+   M   G   D++TYN + +   +  ++
Sbjct: 380 SKGCGPNIRTFNILINGYCKANLIDDGLELFR-KMSLRGVVADTVTYNTLIQGFCELGKL 438

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
              ++ F EM+    +P  ++    +  L D  EPE A+EI+  I        E S  EL
Sbjct: 439 EVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI--------EKSKMEL 490

Query: 402 LVGLRNL 408
            +G+ N+
Sbjct: 491 DIGIYNI 497



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 157/349 (44%), Gaps = 14/349 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++ +++ L   GR  +    V  M E G   +L T  ++ +  C  GK  +AV+  D M
Sbjct: 144 TFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRM 203

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G + + V    +L  +C+   QT+ A+E L +++ + +  D   ++I+++G  K+G+
Sbjct: 204 VETGFQPNEVTYGPVLKVMCKS-GQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262

Query: 233 VEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           ++ A   F EM ++ F+ +   ++ Y T +       + D+  K LR M      P +  
Sbjct: 263 LDNAFNLFNEMEIKGFKAD---IIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA 319

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           FS  +D  VK      A +L    M+  G  PD++TY  + +   K  ++ +       M
Sbjct: 320 FSALIDCFVKEGKLREAEELHK-EMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM 378

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +     P        I     A+  +  +E++  +   G++    + N L+ G   LG+L
Sbjct: 379 VSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 438

Query: 412 SDVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
              +   +EM++RR    I+ Y++ +  L      E     +IF+ +E+
Sbjct: 439 EVAKELFQEMVSRRVRPDIVSYKILLDGL--CDNGEPEKALEIFEKIEK 485



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 139/309 (44%), Gaps = 13/309 (4%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           ++++P   A++ ++D   K G+  +     + M + G+     T+ S+ D +C   + D+
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A    D+M   G   ++   N L++  C+  N     LE   ++  + V  D  ++  L+
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKA-NLIDDGLELFRKMSLRGVVADTVTYNTLI 429

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G+ + G +E A + F EMV R    P+ +++Y+  L  L    + ++AL+    ++   
Sbjct: 430 QGFCELGKLEVAKELFQEMVSR-RVRPD-IVSYKILLDGLCDNGEPEKALEIFEKIEKSK 487

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVH 342
               +  ++    I+  + +++     WD+   +   G  PD  TYN++   L K   + 
Sbjct: 488 MELDIGIYNI---IIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLS 544

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E +  F +M ++   P        I   L   +   + ++   I   G   ++AS  +++
Sbjct: 545 EADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG-FSVDASTVKMV 603

Query: 403 VGLRNLGRL 411
           V + + GRL
Sbjct: 604 VDMLSDGRL 612



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 128/309 (41%), Gaps = 23/309 (7%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L  F+ +F       +YD  +     M + G+  ++  ++ +++  CR   + S A   +
Sbjct: 72  LIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCR-KLSLAFSAM 130

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL- 264
            ++ K+  +PD  +F+ L+ G   EG V EA +    MVE         + ++  LITL 
Sbjct: 131 GKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVE---------MGHKPTLITLN 181

Query: 265 -------IRGKQVDEALKFLRVMKGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
                  + GK  D  L   R++  E  F P    +   L ++ K   +  A++L   M 
Sbjct: 182 ALVNGLCLNGKVSDAVLLIDRMV--ETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKME 239

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
                  D++ Y++I + L K+  +      F+EM    ++   +   T I     A   
Sbjct: 240 ERKIKL-DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           +   ++   +++  I P   + + L+      G+L +     +EM+ R I    VT   L
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSL 358

Query: 437 KKAFYNESR 445
              F  E++
Sbjct: 359 IDGFCKENQ 367


>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
 gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 156/333 (46%), Gaps = 17/333 (5%)

Query: 31  NPHRPTRPRFPTHLDAPYISSSARIICEILA--HASSDDIESALACTGIIPTPDLVHEVL 88
           NP+  T    P+ L      S+A  + EIL   ++S   +  AL  +GI  T +LV ++L
Sbjct: 36  NPNLETHRNVPSPLLFEPQVSNADKLSEILKKRYSSEAAVVKALNESGIDATNELVSQIL 95

Query: 89  QLSYDSPSS-AVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGV 144
            + +DS    A   F WA        +P  ++ M+D+LGK  +F  MW+ V  MK  +G 
Sbjct: 96  -MRFDSHCVVAFGVFIWAKNQTSYVHTPELYDYMIDILGKFKKFSLMWSLVEQMKGLNGY 154

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ---ENQTSR 201
           +SL T + +      A KY +A+  F  +  +G  +D  A+N L+ A+ ++   E+  S 
Sbjct: 155 VSLATASKVMRRLAKARKYKDAIDVFRGIEKYGASKDREALNVLMDALVKEGDVEDAHSA 214

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
            LEF    K  +  D  SF IL+ G+ K      A K   EM E+  ++P+ V++Y  F+
Sbjct: 215 FLEF----KDCITLDSSSFNILIHGYCKARMFVVARKIMEEM-EKHGFHPD-VVSYSCFI 268

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
                 K           M+ + C P +  ++  +  L K      A+++++ M   +G 
Sbjct: 269 AAYCEQKDFRNVEAVFDEMQEKGCKPNVITYTTVMHALGKARQLNEALEVYEKMKR-NGC 327

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            PDS  Y+ +   L ++ R+ +    F +M K 
Sbjct: 328 LPDSKFYSSLIYVLSQSGRIKDAWDVFEDMEKQ 360



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 143/366 (39%), Gaps = 53/366 (14%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156
           A+D FR   + G      A N+++D L K G  E   +A    K+   L   +F  +   
Sbjct: 176 AIDVFRGIEKYGASKDREALNVLMDALVKEGDVEDAHSAFLEFKDCITLDSSSFNILIHG 235

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
           YC A  +  A    + M  HG   DVV+ +  ++A C Q++                   
Sbjct: 236 YCKARMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFR----------------- 278

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
                          NVE     F EM E+      +V+ Y T +  L + +Q++EAL+ 
Sbjct: 279 ---------------NVE---AVFDEMQEK--GCKPNVITYTTVMHALGKARQLNEALEV 318

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFEC 334
              MK   C P  KF+S+ + +   L+ S      WD+   M   G   +   YN +   
Sbjct: 319 YEKMKRNGCLPDSKFYSSLIYV---LSQSGRIKDAWDVFEDMEKQGVCRNLWVYNTMISS 375

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
              + +     K    M  +  +P     A  + M       ++   + +++ +N +  +
Sbjct: 376 ACAHSQGGSALKLLERMEGDSCKPDVKTYAPLLKMCCRRKSIKLLKFLLSHMFKNNV-SV 434

Query: 395 EASANELLVG--LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN--ESRSMRDI 450
           +     LLV    RN G+L     + +E     +L   V M K  KA     E ++M+++
Sbjct: 435 DLGTYTLLVNEFCRN-GKLEHACFYFQEA----VLKGMVPMVKTFKALVEELEQKNMKEM 489

Query: 451 FDSLER 456
            + +E+
Sbjct: 490 KEKIEK 495


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 151/351 (43%), Gaps = 10/351 (2%)

Query: 96  SSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           S AV+       RG       + ++VD L K  +    W  +R M + G + +L T+ S+
Sbjct: 130 SQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSL 189

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
               C A +  +A+     M+  G   +VV   +L+  +C+            + + K  
Sbjct: 190 LHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG 249

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD   + +L+ G  K   V+E+       V      P+ V+ Y + +  L R  ++DEA
Sbjct: 250 TPDLMIYNMLINGLCKADQVDESIALLRRAVSG-GIKPD-VVTYSSVIYGLCRSNRLDEA 307

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
            + L  +K   C P +  +S  +D L K      A  L+++ M   G   D +TY+ + +
Sbjct: 308 CRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEV-MTGDGCDADVVTYSTLID 366

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L K  RV E       M++    P+ +   + I  L D +  + AIE+   +  +   P
Sbjct: 367 GLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAP 426

Query: 394 LEASANELLVGLRNLGRL-SDVRRFAEEMLNRRI----LIYEVTMHKLKKA 439
              + N L+ G+  + R+ S    + +EM++  +    + Y + +  LKK+
Sbjct: 427 SAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLKKS 477



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 129/272 (47%), Gaps = 11/272 (4%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M  HG E +VV  NSL+  +C+  N+  RA E    +K +   P   ++  LL+G  + G
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKN-NEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTG 59

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +E A   F EM++R   +   V+++   +  L R  +++ AL+F R M  + C P +  
Sbjct: 60  KLERAMALFQEMLDRRSHD---VISFNILVTGLCRAGKIETALEFFRKMD-DRCSPNVIT 115

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S  +D L K N  + AV+L + M    G  PD +TY ++ + L K  +V    +   EM
Sbjct: 116 YSVLIDGLCKANRVSQAVELLESMKA-RGCSPDVITYTILVDGLCKESKVAAAWEVLREM 174

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +     P  +   + +  L  A     A+ +   +   G  P   +   L+ GL  +GR+
Sbjct: 175 LDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRV 234

Query: 412 SDVRRFAEEMLNRR----ILIYEVTMHKLKKA 439
            D      +M+++     ++IY + ++ L KA
Sbjct: 235 KDACAMLADMIDKGGTPDLMIYNMLINGLCKA 266



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 114/245 (46%), Gaps = 6/245 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++++ L K  + ++    +R     G+   + T++S+    C + + DEA      + 
Sbjct: 256 YNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVK 315

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNV 233
             G   DV+  ++L+  +C+   +   A +          D D  +++ L++G  K G V
Sbjct: 316 SRGCPPDVILYSTLIDGLCKA-GKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRV 374

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA+     MV      P   + Y + +  L     +DEA++ +  M+  NC P+   ++
Sbjct: 375 DEAHLLLARMVRM--GTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYN 432

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF-FHEMI 352
             +  + ++     A   +   M+ +G  PD +TY+++ E L K+K +HE+      +M+
Sbjct: 433 ILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMV 492

Query: 353 KNEWQ 357
           +  ++
Sbjct: 493 QLGYR 497



 Score = 41.2 bits (95), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 6/142 (4%)

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
           HG  P+ +TYN + + L KN      ++ F  M   E  P+ +   T +  L    + E 
Sbjct: 4   HGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLER 63

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR---RILIYEVTMHK 435
           A+ ++  +L+     +  S N L+ GL   G++     F  +M +R    ++ Y V +  
Sbjct: 64  AMALFQEMLDRRSHDV-ISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDG 122

Query: 436 LKKAFYNESRSMRDIFDSLERR 457
           L KA  N      ++ +S++ R
Sbjct: 123 LCKA--NRVSQAVELLESMKAR 142


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 152/324 (46%), Gaps = 6/324 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   + Y + +++D L K GR ++    +  M E GV  S+  F ++  SYC  G  ++
Sbjct: 319 RGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMED 378

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           AV    +M    V  +V   N L+   CR ++   RA+  LN+ V+  + PD  ++  L+
Sbjct: 379 AVGVLGLMESKKVCPNVRTYNELICGFCRGKSM-DRAMALLNKMVESKLSPDVVTYNTLI 437

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  + G V+ A++ F  M+ R  ++P+    +  F++ L R  +V EA + L  +K ++
Sbjct: 438 HGLCEVGVVDSASRLFRLMI-RDGFSPDQ-WTFNAFMVCLCRMGRVGEAHQILESLKEKH 495

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
                  ++  +D   K     HA  L+  M+      P+S+T+N++ + L K  +V + 
Sbjct: 496 VKANEHAYTALIDGYCKAGKIEHAASLFKRMLA-EECLPNSITFNVMIDGLRKEGKVQDA 554

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
                +M K + +PT       +  +L   + + A EI N ++ +G  P   +    +  
Sbjct: 555 MLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKA 614

Query: 405 LRNLGRLSDVRRFAEEMLNRRILI 428
             + GRL +      ++ N  +L+
Sbjct: 615 YCSQGRLEEAEEMVIKIKNEGVLL 638



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/402 (21%), Positives = 169/402 (42%), Gaps = 50/402 (12%)

Query: 77  IIP--TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQR----LSPYAWNLMVDVLGKNGRFE 130
           +IP  TP L+  +  L+ D P +A++FFRW  R       L+ +   L++ V  +  R  
Sbjct: 47  LIPSLTPSLLCSLFNLNPD-PLTALNFFRWIRRHHNFPHSLATHHSLLLLLVRHRTLRAA 105

Query: 131 Q------------------MWNAVRVMKEDGV-----------LSLPTFASIFDSYCGAG 161
           +                  + N +R M                LSL ++  +        
Sbjct: 106 ENVRNSMIKSCTSPHDATFLLNLLRRMNTAAAAADHQHQLAFKLSLTSYNRLLMCLSRFS 165

Query: 162 KYDEAVMSFDVM---SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
             DE +  +  M   + + V  +++ +N++L++ C+  N     L F+  ++    PD  
Sbjct: 166 MVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLF 225

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  L+ G+ +  +VE A   F  M  R      + ++Y   +  L    ++ EAL+F  
Sbjct: 226 TYTSLVLGYCRNDDVERACGVFCVMPRR------NAVSYTNLIHGLCEAGKLHEALEFWA 279

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M+ + CFPT++ ++  +  L +      A+ L+  M    G  P+  TY ++ + L K 
Sbjct: 280 RMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRE-RGCEPNVYTYTVLIDYLCKE 338

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
            R+ E  K  +EM++    P+ +     I         E A+ +   +    + P   + 
Sbjct: 339 GRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTY 398

Query: 399 NELLVGL---RNLGR-LSDVRRFAEEMLNRRILIYEVTMHKL 436
           NEL+ G    +++ R ++ + +  E  L+  ++ Y   +H L
Sbjct: 399 NELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGL 440



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 132/339 (38%), Gaps = 47/339 (13%)

Query: 122 VLG--KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
           VLG  +N   E+      VM     +S   + ++    C AGK  EA+  +  M   G  
Sbjct: 231 VLGYCRNDDVERACGVFCVMPRRNAVS---YTNLIHGLCEAGKLHEALEFWARMREDGCF 287

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDSFAILLEGWEKEGNVEE 235
             V     L+ A+C    ++ R LE L+   ++     +P+  ++ +L++   KEG ++E
Sbjct: 288 PTVRTYTVLVCALC----ESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDE 343

Query: 236 ANKTFGEMVER------FEWNP---------------------------EHVLAYETFLI 262
           A K   EMVE+        +N                             +V  Y   + 
Sbjct: 344 ALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELIC 403

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
              RGK +D A+  L  M      P +  ++  +  L ++     A +L+  +M+  G  
Sbjct: 404 GFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFR-LMIRDGFS 462

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           PD  T+N    CL +  RV E  +    + +   +         I     A + E A  +
Sbjct: 463 PDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASL 522

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           +  +L    LP   + N ++ GLR  G++ D     E+M
Sbjct: 523 FKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDM 561



 Score = 45.1 bits (105), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 80/389 (20%), Positives = 140/389 (35%), Gaps = 78/389 (20%)

Query: 46  APYISSSARIICEILAHASSDD--------IESALACTGIIPTPDLVHEVLQLSYDSPSS 97
            P + +   +IC      S D         +ES L+   ++    L+H + ++      S
Sbjct: 392 CPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLS-PDVVTYNTLIHGLCEVGV--VDS 448

Query: 98  AVDFFRWAGRGQRLSPYAW--NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIF 154
           A   FR   R    SP  W  N  +  L + GR  +    +  +KE  V +    + ++ 
Sbjct: 449 ASRLFRLMIR-DGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALI 507

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-V 213
           D YC AGK + A   F  M       + +  N ++  + R+E +   A+  +  + K  V
Sbjct: 508 DGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGL-RKEGKVQDAMLLVEDMAKFDV 566

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVE---------------------RFEWNPE 252
            P   ++ IL+E   KE + + AN+    ++                      R E   E
Sbjct: 567 KPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEE 626

Query: 253 HVLA-------YETFLITLIRGKQ-----VDEALKFLRVMKGENCFPTLKFFS------- 293
            V+         ++F+  L+         +D A   LR M G  C P+   +S       
Sbjct: 627 MVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLV 686

Query: 294 ---------NALDILVKL-NDSTHAVQLWDIM-----------MVFHGAFPDSLTYNMIF 332
                    N + + V L N S     +W  +           M   G  P+  TY+ + 
Sbjct: 687 IEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLI 746

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
             L K  R++     +H M +    P+ +
Sbjct: 747 NGLCKVGRLNVAFSLYHHMREGGISPSEI 775


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 146/329 (44%), Gaps = 14/329 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           A NL+V   G++G+  Q++   R +  +      T+ S+    C AGK D+A    D M 
Sbjct: 4   ALNLLVRA-GQHGQAVQLFREERCVPNE-----FTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G+   V   N ++  +C+   +   AL +   V      PD  +F IL++   K G V
Sbjct: 58  DRGIPPGVAVHNGVIKGLCKA-GRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRV 116

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           EEA + F  M    +  P +V+ Y T +  L +  ++D A++ L +M    C P +  +S
Sbjct: 117 EEAFQIFESMHTSSQCLP-NVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYS 175

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             ++ L K   +     L    M   G  PD + YN +   L K++R+ E  +    MI+
Sbjct: 176 VLVEGLCKAGRTDKGFTLLQ-EMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIR 234

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           +   PT +   + + +   + + + A  +   + E G  P   + N ++ GL    RL D
Sbjct: 235 SGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDD 294

Query: 414 VRRFAEEMLNRR----ILIYEVTMHKLKK 438
            +   ++M+  R    ++ Y   +  L K
Sbjct: 295 AQALLKQMVAARCVPDVITYSTIIDGLCK 323



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 152/351 (43%), Gaps = 46/351 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  +++ L K+G+ ++    + +M E G   ++ T++ + +  C AG+ D+       M+
Sbjct: 139 YTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMT 198

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNV 233
             G + DV+  N+LL+ +C+   +   ALE +   ++    P   ++  L+E + +   V
Sbjct: 199 RRGFQPDVIMYNTLLNGLCKSR-RLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQV 257

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A +    M ER    P  V+ Y T +  L R  ++D+A   L+ M    C P +  +S
Sbjct: 258 DRAFRLIQVMSER--GCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYS 315

Query: 294 NALDILVK--------------------------LNDSTHAVQLWDIM------------ 315
             +D L K                           N  T+AV +  +             
Sbjct: 316 TIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALL 375

Query: 316 --MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
             M+     PD  +++M+   L K+  +    K F  M + E +P P+  A  I  L   
Sbjct: 376 RRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKG 435

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            E + A+ ++  ++E+   P  A+ N +L GL  +GR+ +  R  E M+++
Sbjct: 436 GEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHK 485



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 110/278 (39%), Gaps = 12/278 (4%)

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           A+N L+ A      Q  +A++     + +  P+  ++  L+ G  K G +++A +   EM
Sbjct: 4   ALNLLVRA-----GQHGQAVQLFREERCV--PNEFTYGSLIHGLCKAGKLDQAYELLDEM 56

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
            +R    P  V  +   +  L +  +  +AL + + + G  C P +  F+  +D LVK  
Sbjct: 57  RDR--GIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSG 114

Query: 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
               A Q+++ M       P+ +TY  +   L K+ ++    +    M +    P  +  
Sbjct: 115 RVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITY 174

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
           +  +  L  A   +    +   +   G  P     N LL GL    RL +     + M+ 
Sbjct: 175 SVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIR 234

Query: 424 RRILIYEVTMHKLKKAFYNES---RSMRDIFDSLERRC 458
                  VT + L + F       R+ R I    ER C
Sbjct: 235 SGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGC 272



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 115/249 (46%), Gaps = 11/249 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWN------AVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVM 168
           ++ ++D L K+ R +  W        + +MK+ G   +  T+A + +  C A K  +A+ 
Sbjct: 314 YSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALA 373

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
               M    V  D+ + + ++ ++C+  +  +    F    ++   P+  ++A L++G  
Sbjct: 374 LLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLS 433

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G V++A + F  MVE F      V  Y + L  L    +++EA++ +  M  + CFP 
Sbjct: 434 KGGEVDKAVRVFELMVESFRPG---VATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPD 490

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
              +   +  L +++    A +L+  +    G   +   YN++   L K KR+ +     
Sbjct: 491 GASYGALIRGLCRVSCVEEAYELFQAVEA-KGFAMEVGVYNVLVNELCKKKRLSDAHGVA 549

Query: 349 HEMIKNEWQ 357
           +++I+  ++
Sbjct: 550 NKLIEAGYK 558



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 48/104 (46%)

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF 150
           S+D  ++   F   + R  + +P A+  ++D L K G  ++      +M E     + T+
Sbjct: 400 SHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATY 459

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
            S+ D  CG G+ +EAV   + M       D  +  +L+  +CR
Sbjct: 460 NSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCR 503


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 160/361 (44%), Gaps = 47/361 (13%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSY 157
           F +   RG R     ++ ++D L K GR ++  +    M + G   +P   T+ S+   +
Sbjct: 173 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGS-CMPNTVTYNSLISGF 231

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPD 216
           C  GK DEA+   + M+  G   DVV   +L++  C+   +   A + LN++ +K + PD
Sbjct: 232 CRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLA-RLDDAYDLLNQMTRKGLTPD 290

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +F  L++G  +E  + +A    GEM  R   +P  V  Y T L    R  Q++EA KF
Sbjct: 291 VVTFTSLMDGLCRENRLSDAVHILGEM-RRKSCSPT-VYTYNTILDGYCRANQLEEARKF 348

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
           +  ++  +C P +  F+  +  L K+N S+ A++L +         PD + Y  + + L 
Sbjct: 349 M--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR-RRRCNPDVVMYTTVIDGLC 405

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           + K+V E  + + +M+                     +EP             G LP   
Sbjct: 406 REKKVDEACRVYRKML---------------------EEP-------------GCLPNSI 431

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
           + + L+ GL N G L   R + E+     I  Y + +   +KA  N     R++ D + +
Sbjct: 432 TYSTLITGLCNAGMLDRARGYIEKGCVPNIGTYNLLIDAFRKA--NRDEDARELLDDMVQ 489

Query: 457 R 457
           R
Sbjct: 490 R 490



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 132/311 (42%), Gaps = 6/311 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           + +++D L K GR ++    +  M++  V +  T+ S+    C A +  EA    + M  
Sbjct: 84  YTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVY 143

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G   D+    +L++  C+ +        F   V +   PD  +++ L++G  KEG ++E
Sbjct: 144 SGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKE 203

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A   FG M++     P  V  Y + +    R  ++DEA+  L  M      P +  ++  
Sbjct: 204 AIDLFGRMIKSGSCMPNTV-TYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL 262

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           ++   KL     A  L +  M   G  PD +T+  + + L +  R+ +      EM +  
Sbjct: 263 MNGFCKLARLDDAYDLLN-QMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKS 321

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE-ASANELLVGLRNLGRLSDV 414
             PT     T +     A++ E   E   ++LE    P    S N ++ GL  + R S+ 
Sbjct: 322 CSPTVYTYNTILDGYCRANQLE---EARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEA 378

Query: 415 RRFAEEMLNRR 425
               EE   RR
Sbjct: 379 MELVEEARRRR 389



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 132/287 (45%), Gaps = 8/287 (2%)

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKE 230
           +++ +    D V   SL+  +C+ + +  +AL FL + V K   PD  ++  ++     E
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVK-RLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVE 59

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             + EA K   EM  R    P +V+ Y   +  L +G +VDEA+  L  M+ + C PT  
Sbjct: 60  NRLHEARKFLEEMANR-NLTP-NVVTYTVLIDGLCKGGRVDEAVALLSKMR-KKCVPTAV 116

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +++ +  L K   ++ A  L +  MV+ G  PD  TY  +     K+K+  +  + F +
Sbjct: 117 TYNSLISGLCKAERASEAYDLLE-EMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQ 175

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-ILPLEASANELLVGLRNLG 409
           ++   ++P  +  +  I  L      + AI+++  ++++G  +P   + N L+ G   +G
Sbjct: 176 LVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMG 235

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
           ++ +     E M         VT   L   F   +R + D +D L +
Sbjct: 236 KMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR-LDDAYDLLNQ 281


>gi|224107983|ref|XP_002314677.1| predicted protein [Populus trichocarpa]
 gi|222863717|gb|EEF00848.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 148/335 (44%), Gaps = 46/335 (13%)

Query: 64  SSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVD 121
           S D +  AL  +GI  T DLV ++L+   +   +A+  F WA    G   +P  ++L+VD
Sbjct: 48  SEDAVVKALDESGINATNDLVSQLLERFSNQWITALGVFIWAKNQTGYVHTPRLYDLVVD 107

Query: 122 VLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
           +LGK  +F  MW  V  M E +G +S  T + +      +G Y + +     +  + V++
Sbjct: 108 ILGKCKKFGIMWKVVNEMNELNGQVSFSTMSIVVRRLASSGMYKDVIDVLRGLEKYRVKK 167

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           D VA+N ++ A+ +Q         FL   K  +  D  SF IL+ G+ +   +++A KT 
Sbjct: 168 DTVALNMVMHALAKQGGAKDAYSVFL-EFKDSITLDSHSFNILIHGYCEARMLDDARKTM 226

Query: 241 GEMVERFEWNPE----------------------------------HVLAYETFLITLIR 266
            EM E+  + P+                                   V+AY  ++  L +
Sbjct: 227 EEM-EKHGFRPDASSYTCFIKAYCKQKDFRNVEVILNEMGEKGCEPDVIAYSIYIRALGK 285

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDIL---VKLNDSTHAVQLWDIMMVFHGAFP 323
            ++++EAL+    M   +C P  KFFS  + +L    +LND+ +  +     M  HG   
Sbjct: 286 ARKINEALEVYEKMNKNSCKPDAKFFSTLIYVLGRSGRLNDAWYVFE----DMENHGVSR 341

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
           D  TYN +      N++ +   K    M  N  +P
Sbjct: 342 DLWTYNAMIYHACANRQGNSALKLLERMEVNSCKP 376


>gi|449444202|ref|XP_004139864.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Cucumis sativus]
 gi|449502917|ref|XP_004161779.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Cucumis sativus]
          Length = 532

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 180/408 (44%), Gaps = 47/408 (11%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA-GRG---QRLSPYA-- 115
           H   +DIE AL+   ++ T D V +VL+      + A  FF W   RG   ++ +P +  
Sbjct: 104 HKPVEDIERALSLCDLVLTDDFVLKVLRRHRSDWNPAFIFFNWVLKRGTNEEKFTPGSVI 163

Query: 116 WNLMVDVLGKNGRFEQMWNA-VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++ +LGK  RFE++    V + K   +++  T++ + + Y  A K +EA+  F    
Sbjct: 164 YNEILVILGKFRRFEEVDKVLVEMSKRKELVNEETYSVLLNRYAAAHKVEEAISIFYRRQ 223

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+E +++A  SLL  +CR ++  +    F ++  + V  D  +  I+L GW   GNV 
Sbjct: 224 EFGLEMNLIAFQSLLMWLCRYKHVEAAETLFHSKKHEFVT-DIKTSNIILNGWCVLGNVH 282

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA + + E++E  +  P+ +  Y T + +L +  ++  ALK  R M        +   + 
Sbjct: 283 EAKRFWREIIES-KCEPD-IYTYGTLINSLTKKGKLGTALKLFRAMWERGLTTDVVICNC 340

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +D L        A++++  M    G   +  TYN + + L K +R+ +V +  +EM + 
Sbjct: 341 IIDALCFKKRIPEALEIFKEMNE-RGCAANVATYNTLIKHLCKIRRMEKVNELLNEMEER 399

Query: 355 EWQPTPLNCATAITML-----------------------------------LDADEPEIA 379
           +    P N  T I +L                                   +D D  E  
Sbjct: 400 KGSCWP-NSVTFIYLLGSVRGPEEVPVLFQRMERSGCKMTSDIYNLILRLYMDWDIQERV 458

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
              WN + E G+ P   S   ++ GL   GR  D  R+  EM  + I+
Sbjct: 459 KSTWNEMKEMGLGPDRRSYTIMIHGLYEKGRTKDGLRYFNEMTLKGIM 506



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 12/242 (4%)

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           VLG     ++ W  +  ++      + T+ ++ +S    GK   A+  F  M   G+  D
Sbjct: 277 VLGNVHEAKRFWREI--IESKCEPDIYTYGTLINSLTKKGKLGTALKLFRAMWERGLTTD 334

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           VV  N ++ A+C ++ +   ALE    + ++    +  ++  L++   K   +E+ N+  
Sbjct: 335 VVICNCIIDALCFKK-RIPEALEIFKEMNERGCAANVATYNTLIKHLCKIRRMEKVNELL 393

Query: 241 GEMVERFE--WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
            EM ER    W P  V    TF+  L   +  +E     + M+   C  T   ++  L +
Sbjct: 394 NEMEERKGSCW-PNSV----TFIYLLGSVRGPEEVPVLFQRMERSGCKMTSDIYNLILRL 448

Query: 299 LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
            +  +        W+ M    G  PD  +Y ++   L +  R  +  ++F+EM      P
Sbjct: 449 YMDWDIQERVKSTWNEMKEM-GLGPDRRSYTIMIHGLYEKGRTKDGLRYFNEMTLKGIMP 507

Query: 359 TP 360
            P
Sbjct: 508 EP 509


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 146/329 (44%), Gaps = 14/329 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           A NL+V   G++G+  Q++   R +  +      T+ S+    C AGK D+A    D M 
Sbjct: 4   ALNLLVRA-GQHGQAVQLFREERCVPNE-----FTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G+   V   N ++  +C+   +   AL +   V      PD  +F IL++   K G V
Sbjct: 58  DRGIPPGVAVHNGVIRGLCKA-GRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRV 116

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           EEA + F  M    +  P +V+ Y T +  L +  ++D A++ L +M    C P +  +S
Sbjct: 117 EEAFQIFESMHTSSQCLP-NVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYS 175

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             ++ L K   +     L    M   G  PD + YN +   L K++R+ E  +    MI+
Sbjct: 176 VLVEGLCKAGRTDKGFTLLQ-EMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIR 234

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           +   PT +   + + +   + + + A  +   + E G  P   + N ++ GL    RL D
Sbjct: 235 SGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDD 294

Query: 414 VRRFAEEMLNRR----ILIYEVTMHKLKK 438
            +   ++M+  R    ++ Y   +  L K
Sbjct: 295 AQALLKQMVAARCVPDVITYSTIIDGLCK 323



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 152/351 (43%), Gaps = 46/351 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  +++ L K+G+ ++    + +M E G   ++ T++ + +  C AG+ D+       M+
Sbjct: 139 YTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMT 198

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNV 233
             G + DV+  N+LL+ +C+   +   ALE +   ++    P   ++  L+E + +   V
Sbjct: 199 RRGFQPDVIMYNTLLNGLCKSR-RLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQV 257

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A +    M ER    P  V+ Y T +  L R  ++D+A   L+ M    C P +  +S
Sbjct: 258 DRAFRLIQVMSER--GCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYS 315

Query: 294 NALDILVK--------------------------LNDSTHAVQLWDIM------------ 315
             +D L K                           N  T+AV +  +             
Sbjct: 316 TIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALL 375

Query: 316 --MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
             M+     PD  +++M+   L K+  +    K F  M + E +P P+  A  I  L   
Sbjct: 376 RRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKG 435

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            E + A+ ++  ++E+   P  A+ N +L GL  +GR+ +  R  E M+++
Sbjct: 436 GEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHK 485



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 110/278 (39%), Gaps = 12/278 (4%)

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           A+N L+ A      Q  +A++     + +  P+  ++  L+ G  K G +++A +   EM
Sbjct: 4   ALNLLVRA-----GQHGQAVQLFREERCV--PNEFTYGSLIHGLCKAGKLDQAYELLDEM 56

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
            +R    P  V  +   +  L +  +  +AL + + + G  C P +  F+  +D LVK  
Sbjct: 57  RDR--GIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSG 114

Query: 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
               A Q+++ M       P+ +TY  +   L K+ ++    +    M +    P  +  
Sbjct: 115 RVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITY 174

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
           +  +  L  A   +    +   +   G  P     N LL GL    RL +     + M+ 
Sbjct: 175 SVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIR 234

Query: 424 RRILIYEVTMHKLKKAFYNES---RSMRDIFDSLERRC 458
                  VT + L + F       R+ R I    ER C
Sbjct: 235 SGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGC 272



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 115/249 (46%), Gaps = 11/249 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWN------AVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVM 168
           ++ ++D L K+ R +  W        + +MK+ G   +  T+A + +  C A K  +A+ 
Sbjct: 314 YSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALA 373

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
               M    V  D+ + + ++ ++C+  +  +    F    ++   P+  ++A L++G  
Sbjct: 374 LLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLS 433

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G V++A + F  MVE F      V  Y + L  L    +++EA++ +  M  + CFP 
Sbjct: 434 KGGEVDKAVRVFELMVESFRPG---VATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPD 490

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
              +   +  L +++    A +L+  +    G   +   YN++   L K KR+ +     
Sbjct: 491 GASYGALIRGLCRVSCVEEAYELFQAVEA-KGFAMEVGVYNVLVNELCKKKRLSDAHGVA 549

Query: 349 HEMIKNEWQ 357
           +++I+  ++
Sbjct: 550 NKLIEAGYK 558



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 48/104 (46%)

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF 150
           S+D  ++   F   + R  + +P A+  ++D L K G  ++      +M E     + T+
Sbjct: 400 SHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATY 459

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
            S+ D  CG G+ +EAV   + M       D  +  +L+  +CR
Sbjct: 460 NSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCR 503


>gi|225461528|ref|XP_002282646.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Vitis vinifera]
          Length = 546

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 172/401 (42%), Gaps = 50/401 (12%)

Query: 63  ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA-----WN 117
           +S  +IE AL    +  T DLV +VL+        A  FF WA R    S Y+      N
Sbjct: 100 SSVSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGIESGYSPGCGVHN 159

Query: 118 LMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
            ++D+LG+  RF +M      M K  G+++  TF  + + Y  A K +EAV  F+     
Sbjct: 160 EILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKTEEAVKIFNKRKGL 219

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
           G E D++A  +LL ++CR ++      EFL   KK    PD  S  ++L GW   G++ E
Sbjct: 220 GFELDLIAFQTLLMSLCRYKH--VEMAEFLFHSKKNEFPPDIKSMNVILNGWCVLGSLRE 277

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A + + +++   +  P+    Y  F+ +L +  ++  A+K  + M  + C P +   +  
Sbjct: 278 AKRFWNDIITS-KCKPDK-FTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCI 335

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           +D L        A+++   M       PD  TYN + + L K +R  +V +   +M +  
Sbjct: 336 IDALCFKKRIPEALEVLREMNE-RDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKG 394

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEI-------------------------WNYILE-- 388
             P   N  T   +L    +PE    I                         W Y L+  
Sbjct: 395 CLP---NARTYGYLLKSTKKPEEVPGILERMERNGCRMNSDCYNLILKLYMDWGYELKLR 451

Query: 389 --------NGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
                   NG+ P + +   ++ GL + GR+ D   + ++M
Sbjct: 452 STLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFKQM 492


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 144/304 (47%), Gaps = 12/304 (3%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           R    G + +   +  +++V+ K+G+       +R M+E  + L    ++ I D  C  G
Sbjct: 218 RMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDG 277

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D A   F+ M + G + D++  N+L+   C        A    + +K+ + P+  +F+
Sbjct: 278 SLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFS 337

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +L++ + KEG + EA++   EM++R      + + Y + +    +  +++EA++ + +M 
Sbjct: 338 VLIDSFVKEGKLREADQLLKEMMQR--GIAPNTITYNSLIDGFCKENRLEEAIQMVDLMI 395

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            + C P +  F+  ++   K N     ++L+   M   G   +++TYN + +   ++ ++
Sbjct: 396 SKGCDPDIMTFNILINGYCKANRIDDGLELFR-EMSLRGVIANTVTYNTLVQGFCQSGKL 454

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
              +K F EM+    +P  ++    +  L D  E E A+EI+  I        E S  EL
Sbjct: 455 EVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKI--------EKSKMEL 506

Query: 402 LVGL 405
            +G+
Sbjct: 507 DIGI 510



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 134/283 (47%), Gaps = 7/283 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L T  ++ +  C  GK  +AV+  D M   G + + V    +L+ +C+   QT+ A+E 
Sbjct: 192 TLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKS-GQTALAMEL 250

Query: 206 LNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLIT 263
           L +++ + +  D   ++I+++G  K+G+++ A   F EM ++ F+ +   ++ Y T +  
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKAD---IITYNTLIGG 307

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
                + D+  K LR M      P +  FS  +D  VK      A QL   MM   G  P
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQ-RGIAP 366

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           +++TYN + +   K  R+ E  +    MI     P  +     I     A+  +  +E++
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELF 426

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
             +   G++    + N L+ G    G+L   ++  +EM++RR+
Sbjct: 427 REMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRV 469



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 143/330 (43%), Gaps = 7/330 (2%)

Query: 98  AVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           AVD FR   + + L +   +N +   + K  ++E +    + M+  G+  S+ T + + +
Sbjct: 72  AVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMIN 131

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-D 214
            +C   K   A  +   +   G E D V  N+LL+ +C  E + S ALE ++R+ ++   
Sbjct: 132 CFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLC-LECRVSEALELVDRMVEMGHK 190

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P   +   L+ G    G V +A      MVE   + P  V  Y   L  + +  Q   A+
Sbjct: 191 PTLITLNTLVNGLCLNGKVSDAVVLIDRMVET-GFQPNEV-TYGPVLNVMCKSGQTALAM 248

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           + LR M+  N       +S  +D L K     +A  L++ M +  G   D +TYN +   
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI-KGFKADIITYNTLIGG 307

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
                R  +  K   +MIK +  P  +  +  I   +   +   A ++   +++ GI P 
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPN 367

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             + N L+ G     RL +  +  + M+++
Sbjct: 368 TITYNSLIDGFCKENRLEEAIQMVDLMISK 397



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 117/273 (42%), Gaps = 11/273 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           RG   +   +N ++D   K  R E+    V +M   G    + TF  + + YC A + D+
Sbjct: 362 RGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDD 421

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
            +  F  MS+ GV  + V  N+L+   C+          F   V + V PD  S+ ILL+
Sbjct: 422 GLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLD 481

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G    G +E+A + FG+ +E+ +   + +  Y   +  +    +VD+A      +     
Sbjct: 482 GLCDNGELEKALEIFGK-IEKSKMELD-IGIYMIIIHGMCNASKVDDAWDLFCSLP---- 535

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIM---MVFHGAFPDSLTYNMIFECLIKNKRVH 342
              +K  + A +I++       ++   DI+   M   G  PD LTYN++    + +    
Sbjct: 536 LKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDAT 595

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
              +   EM K+   P  ++    +  +L + E
Sbjct: 596 TAAELIEEM-KSSGFPADVSTVKMVINMLSSGE 627



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 1/144 (0%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCG 159
           F     R  R    ++ +++D L  NG  E+      ++ K    L +  +  I    C 
Sbjct: 461 FQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCN 520

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           A K D+A   F  + + GV+ D  A N ++S +CR+++ +   + F    ++   PD  +
Sbjct: 521 ASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELT 580

Query: 220 FAILLEGWEKEGNVEEANKTFGEM 243
           + IL+     + +   A +   EM
Sbjct: 581 YNILIRAHLGDDDATTAAELIEEM 604


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 160/361 (44%), Gaps = 47/361 (13%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSY 157
           F +   RG R     ++ ++D L K GR ++  +    M + G   +P   T+ S+   +
Sbjct: 173 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGS-CMPNTVTYNSLISGF 231

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPD 216
           C  GK DEA+   + M+  G   DVV   +L++  C+   +   A + LN++ +K + PD
Sbjct: 232 CRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLA-RLDDAYDLLNQMTRKGLTPD 290

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +F  L++G  +E  + +A    GEM  R   +P  V  Y T L    R  Q++EA KF
Sbjct: 291 VVTFTSLMDGLCRENRLSDAVHILGEM-RRKSCSPT-VYTYNTILDGYCRANQLEEARKF 348

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
           +  ++  +C P +  F+  +  L K+N S+ A++L +         PD + Y  + + L 
Sbjct: 349 M--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR-RRRCNPDVVMYTTVIDGLC 405

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           + K+V E  + + +M+                     +EP             G LP   
Sbjct: 406 REKKVDEACRVYRKML---------------------EEP-------------GCLPNSI 431

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
           + + L+ GL N G L   R + E+     I  Y + +   +KA  N     R++ D + +
Sbjct: 432 TYSTLVTGLCNAGMLDRARGYIEKGCVPNIGTYNLLIDAFRKA--NRDEDARELLDDMVQ 489

Query: 457 R 457
           R
Sbjct: 490 R 490



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 132/311 (42%), Gaps = 6/311 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           + +++D L K GR ++    +  M++  V +  T+ S+    C A +  EA    + M  
Sbjct: 84  YTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVY 143

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G   D+    +L++  C+ +        F   V +   PD  +++ L++G  KEG ++E
Sbjct: 144 SGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKE 203

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A   FG M++     P  V  Y + +    R  ++DEA+  L  M      P +  ++  
Sbjct: 204 AIDLFGRMIKSGSCMPNTV-TYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL 262

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           ++   KL     A  L +  M   G  PD +T+  + + L +  R+ +      EM +  
Sbjct: 263 MNGFCKLARLDDAYDLLN-QMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKS 321

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE-ASANELLVGLRNLGRLSDV 414
             PT     T +     A++ E   E   ++LE    P    S N ++ GL  + R S+ 
Sbjct: 322 CSPTVYTYNTILDGYCRANQLE---EARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEA 378

Query: 415 RRFAEEMLNRR 425
               EE   RR
Sbjct: 379 MELVEEARRRR 389



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 120/252 (47%), Gaps = 7/252 (2%)

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKE 230
           +++ +    D V   SL+  +C+ + +  +AL FL + V K   PD  ++  ++     E
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVK-RLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVE 59

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             + EA K   EM  R    P +V+ Y   +  L +G +VDEA+  L  M+ + C PT  
Sbjct: 60  NRLHEARKFLEEMANR-NLTP-NVVTYTVLIDGLCKGGRVDEAVALLSKMR-KKCVPTAV 116

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +++ +  L K   ++ A  L +  MV+ G  PD  TY  +     K+K+  +  + F +
Sbjct: 117 TYNSLISGLCKAERASEAYDLLE-EMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQ 175

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-ILPLEASANELLVGLRNLG 409
           ++   ++P  +  +  I  L      + AI+++  ++++G  +P   + N L+ G   +G
Sbjct: 176 LVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMG 235

Query: 410 RLSDVRRFAEEM 421
           ++ +     E M
Sbjct: 236 KMDEAMNLLERM 247



 Score = 45.4 bits (106), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 1/107 (0%)

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           MV  G  PD  TY  +   L    R+HE  KF  EM      P  +     I  L     
Sbjct: 37  MVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGR 96

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
            + A+ + + + +  + P   + N L+ GL    R S+     EEM+
Sbjct: 97  VDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMV 142


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 168/396 (42%), Gaps = 22/396 (5%)

Query: 36  TRPRFPTHL--DAPYIS-SSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY 92
           ++  F  HL  DA  I+ +S   I +++  +    +  AL    I  TP+LV++ L+  +
Sbjct: 18  SKKYFQFHLPRDAVNIAEASDATIAKLVLESDPRTLSEALTKPRIHWTPELVNKTLKRLW 77

Query: 93  DSPSSAVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP- 148
           +    A+ FF+   R       SP +++  VD+  +   F   W  V  M+   +   P 
Sbjct: 78  NHGPKALLFFKHLDRHLPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPK 137

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T A + + Y   GK   AV +F  M  HG+ QD+ + N+LL  +C+  N+   A + L  
Sbjct: 138 TLAILAERYASIGKPHRAVRTFLSMHEHGLHQDLHSFNTLLDILCKS-NRVETAHDLLRT 196

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +K    PD  S+ IL  G+  +     A +   EMV+R    P  V  Y T L    R  
Sbjct: 197 LKSRFRPDTVSYNILANGYCLKKRTPMALRVLKEMVQR-GIEPTMV-TYNTMLKGYFRSN 254

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           Q+ EA +F   MK   C   +  ++  +    +  +   A +++D  MV  G  P+  TY
Sbjct: 255 QIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKRVFD-EMVKEGVAPNVATY 313

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           N + +   K   V      F EM++     P  +     I  L    + E A+     + 
Sbjct: 314 NALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMG 373

Query: 388 ENG----------ILPLEASANELLVGLRNLGRLSD 413
           E+G          ++     A E+  GL   G++ D
Sbjct: 374 EHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMGD 409



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 156/391 (39%), Gaps = 23/391 (5%)

Query: 33  HRPTRPRFPTHLD---APYISSSARIICEILAHASSDDIESALACTG------IIPTPDL 83
           H P    F  HLD     Y  S +     +   A   D  SA A  G      + P+P  
Sbjct: 79  HGPKALLFFKHLDRHLPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKT 138

Query: 84  VHEVLQLSYDS---PSSAV-DFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           +  +L   Y S   P  AV  F      G     +++N ++D+L K+ R E   + +R +
Sbjct: 139 L-AILAERYASIGKPHRAVRTFLSMHEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTL 197

Query: 140 KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT 199
           K        ++  + + YC   +   A+     M   G+E  +V  N++L    R  NQ 
Sbjct: 198 KSRFRPDTVSYNILANGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRS-NQI 256

Query: 200 SRALEF-LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
             A EF L   K+  + D  S+  ++ G+ + G V++A + F EMV+  E    +V  Y 
Sbjct: 257 KEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKRVFDEMVK--EGVAPNVATYN 314

Query: 259 TFLITLIRGKQVDEALKFLRVMKGEN-CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
             +    +   V  A+     M  E  C P +  F+  +  L  + D   A+   +  M 
Sbjct: 315 ALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFME-RMG 373

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
            HG      TYN++         + +  + F +M      P        I+ +    + E
Sbjct: 374 EHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFVRKKSE 433

Query: 378 ---IAIEIWNYILENGILPLEASANELLVGL 405
              +A ++   ++E G LP + + N +L GL
Sbjct: 434 DLVVAGKLLMEMVERGFLPRKFTFNRVLNGL 464


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 155/355 (43%), Gaps = 50/355 (14%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK--ED--GVLSLPTFASIFDSYCGAGK 162
           RG      A   ++  L K G+    W A RVM+  ED   V  + T+  +   YC  G+
Sbjct: 139 RGDIPDIIACTSLIRGLCKTGK---TWKATRVMEILEDSGAVPDVITYNVLISGYCKTGE 195

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFA 221
              A+   D MS   V  DVV  N++L  +C    +   A+E L+R +++   PD  ++ 
Sbjct: 196 IGSALQLLDRMS---VSPDVVTYNTILRTLC-DSGKLKEAMEVLDRQMQRECYPDVITYT 251

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           IL+E   KE  V +A K   EM ++    P+ V+ Y   +  + +  ++DEA++FL  M 
Sbjct: 252 ILIEATCKESGVGQAMKLLDEMRDK-GCKPD-VVTYNVLINGICKEGRLDEAIRFLNHMP 309

Query: 282 G-----------------------------------ENCFPTLKFFSNALDILVKLNDST 306
                                               + C P++  F+  ++ L +     
Sbjct: 310 SYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIG 369

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            A+ + +  M  HG  P+SL+YN +   L K+K++    ++   M+     P  +   T 
Sbjct: 370 RAIDVLE-KMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTL 428

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           +T L    + ++A+EI N +   G  P+  + N ++ GL  +G+  D  +  +EM
Sbjct: 429 LTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEM 483



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 149/323 (46%), Gaps = 6/323 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +     +N++++ + K GR ++    +  M   G   ++ T   I  S C  G++ +
Sbjct: 276 KGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMD 335

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A      M   G    VV  N L++ +CR+     RA++ L ++ +    P+  S+  LL
Sbjct: 336 AEKFLAEMIRKGCSPSVVTFNILINFLCRK-GLIGRAIDVLEKMPQHGCTPNSLSYNPLL 394

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
               K+  +E A +    MV R  + P+ ++ Y T L  L +  +VD A++ L  +  + 
Sbjct: 395 HALCKDKKMERAIEYLDIMVSRGCY-PD-IVTYNTLLTALCKDGKVDVAVEILNQLGSKG 452

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C P L  ++  +D L K+  +  A++L D  M   G  PD +TY+ +   L +  +V E 
Sbjct: 453 CSPVLITYNTVIDGLSKVGKTDDAIKLLD-EMKGKGLKPDIITYSTLVGGLSREGKVDEA 511

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
             FFH++ +   +P  +   + +  L  A +   AI+   Y++  G  P E S   L+ G
Sbjct: 512 IAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEG 571

Query: 405 LRNLGRLSDVRRFAEEMLNRRIL 427
           L   G   +      E+ +R ++
Sbjct: 572 LAYEGLAKEALELLNELCSRGVV 594



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 153/354 (43%), Gaps = 11/354 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++  L  +G+ ++    + R M+ +    + T+  + ++ C      +A+   D M
Sbjct: 214 TYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEM 273

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G + DVV  N L++ IC+ E +   A+ FLN +      P+  +  I+L      G 
Sbjct: 274 RDKGCKPDVVTYNVLINGICK-EGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGR 332

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             +A K   EM+ R   +P  V+ +   +  L R   +  A+  L  M    C P    +
Sbjct: 333 WMDAEKFLAEMI-RKGCSPS-VVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSY 390

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  L  L K      A++  DIM V  G +PD +TYN +   L K+ +V    +  +++ 
Sbjct: 391 NPLLHALCKDKKMERAIEYLDIM-VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLG 449

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P  +   T I  L    + + AI++ + +   G+ P   + + L+ GL   G++ 
Sbjct: 450 SKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVD 509

Query: 413 DVRRF---AEEM-LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 462
           +   F    EEM +    + Y   M  L KA     R++  +   + R CK ++
Sbjct: 510 EAIAFFHDLEEMGVKPNAITYNSIMLGLCKA-RQTVRAIDFLAYMVARGCKPTE 562



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 141/324 (43%), Gaps = 7/324 (2%)

Query: 123 LGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           L +NG  E+ +  +  M   G +  +    S+    C  GK  +A    +++   G   D
Sbjct: 120 LVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPD 179

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           V+  N L+S  C+   +   AL+ L+R+   V PD  ++  +L      G ++EA +   
Sbjct: 180 VITYNVLISGYCKT-GEIGSALQLLDRMS--VSPDVVTYNTILRTLCDSGKLKEAMEVLD 236

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
             ++R E  P+ V+ Y   +    +   V +A+K L  M+ + C P +  ++  ++ + K
Sbjct: 237 RQMQR-ECYPD-VITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICK 294

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                 A++  +  M  +G  P+ +T+N+I   +    R  + EKF  EMI+    P+ +
Sbjct: 295 EGRLDEAIRFLN-HMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVV 353

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
                I  L        AI++   + ++G  P   S N LL  L    ++     + + M
Sbjct: 354 TFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIM 413

Query: 422 LNRRILIYEVTMHKLKKAFYNESR 445
           ++R      VT + L  A   + +
Sbjct: 414 VSRGCYPDIVTYNTLLTALCKDGK 437


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 164/378 (43%), Gaps = 12/378 (3%)

Query: 91  SYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SL 147
           S     +A+ FFRWAG   G +   + +N ++++L     + Q +     M + G+  + 
Sbjct: 95  SLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNT 154

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
            +F  +  S+    + D+AV  F++M     + D+     L+  +C+      +A E  +
Sbjct: 155 FSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKA-GMDEKAFEVFH 213

Query: 208 RVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
            +  +  V PD      ++    K   V+EA + FG+M E+  + P+  +AY T +  L 
Sbjct: 214 EMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQM-EKCGFPPD-AIAYNTMIDGLA 271

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           +     EALK L  M  + C PT   +   ++ L K      A +L+ +M    G  P+S
Sbjct: 272 KAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAA-SGFRPNS 330

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           + Y  +     K+ R+ E    F EM++  ++P  +     I  L  +   E A + +  
Sbjct: 331 VIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEE 390

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           ++  G  P   +   ++ GL  +GR+++  R  + M+        VT   L   F    R
Sbjct: 391 MMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGR 450

Query: 446 --SMRDIFDSLERRCKTS 461
                 + D L+ +C +S
Sbjct: 451 LDEAAQLLDELD-KCSSS 467



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 123/293 (41%), Gaps = 5/293 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+N M+D L K G  ++    +  ++ +  V +  T+  + +S C AG  + A   F VM
Sbjct: 262 AYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVM 321

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +  G   + V   SL+    +          F   V+    PD  +  ++++G  K GN 
Sbjct: 322 AASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNF 381

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E+A K+F EM+ R    P +V+ Y T +  L +  +V  A + ++ M    CFP    + 
Sbjct: 382 EQAAKSFEEMM-RGGCKP-NVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYI 439

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE-VEKFFHEMI 352
             LD   KL     A QL D +     + P+   Y+ +   L     V + ++  F +  
Sbjct: 440 CLLDGFCKLGRLDEAAQLLDELDKCSSS-PNLQLYSSLVNGLCDGGSVEKTLDDLFEQSK 498

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
                  P  C + I  L      + A  I+  ++  G  P   + N L+ GL
Sbjct: 499 AAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGL 551



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 115/293 (39%), Gaps = 37/293 (12%)

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR-QENQTSRALEFLNRV 209
            SI    C  G+ DEA   F  M   G + D    N L++ +CR +EN+  RA   L+ +
Sbjct: 510 CSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDL 569

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL------------- 255
           +K+   PD  ++  L  G  K G V+ A K   E   R  WN + V              
Sbjct: 570 EKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSR-GWNADVVAYTALCTGLCYQGQ 628

Query: 256 ---------------------AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
                                AY   +  LI+ K++++A KF   M G+   PT+  ++ 
Sbjct: 629 VDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTA 688

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +  L    +   A   ++ M+         + Y+ +     K  +V    K F +MI  
Sbjct: 689 LVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISR 748

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
              PT +  A+    L+ + + E A E+   +   G  P  A+   +L GLR 
Sbjct: 749 GNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRK 801



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 133/324 (41%), Gaps = 13/324 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R       +M+D L K+G FEQ   +   M   G   ++ T+ +I       G+   A
Sbjct: 360 GYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANA 419

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLE 225
                 M  HG   D V    LL   C+   +   A + L+ + K    P+   ++ L+ 
Sbjct: 420 FRIMKGMIAHGCFPDSVTYICLLDGFCKL-GRLDEAAQLLDELDKCSSSPNLQLYSSLVN 478

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHV--LAYETFLITLIRGKQVDEALKFLRVMKGE 283
           G    G+VE   KT  ++ E+ +   E +      + ++ L +  ++DEA +  + M  E
Sbjct: 479 GLCDGGSVE---KTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSE 535

Query: 284 NCFPTLKFFSNALDILVKLNDST---HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
            C P    ++  ++ L +  ++        L D+  V  G  PD++TY  +   L K   
Sbjct: 536 GCKPDATTYNILINGLCRSRENRVERAFALLHDLEKV--GYLPDAVTYTPLCIGLCKIGE 593

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           V    K   E     W    +      T L    + + A+ ++  ++  G  P  A+   
Sbjct: 594 VDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCC 653

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNR 424
           ++ GL  + +L D  +F +EM+ +
Sbjct: 654 IINGLIKVKKLEDACKFFDEMIGK 677


>gi|225436259|ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Vitis vinifera]
          Length = 566

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 181/416 (43%), Gaps = 47/416 (11%)

Query: 54  RIICEILAHASSDD--IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQ 109
           R I +IL    S    ++  L   G+  + +LV EVL    +   +A  FF WA +  G 
Sbjct: 84  RRIVDILQEPGSSMSLVKHKLESCGVAASSELVVEVLSRVRNHWEAAFTFFLWAAKQPGY 143

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED----GVLSLPTFASIFDSYCGAGKYDE 165
             S  A++ M+ +LGK  +F+  W  +  M+       +++  T + +   YC      +
Sbjct: 144 AHSLRAYHSMISILGKMRKFDTAWALIDEMRGGRTGTSLVTPHTLSIMIRRYCAVHDVGK 203

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILL 224
           A+ +F           +    +LLSA+CR +N Q +  L F NR   +   D  SF I+L
Sbjct: 204 AINTFYAHKQFKFGVGIEEFQNLLSALCRYKNVQDAEQLLFCNR--NVFPFDTKSFNIIL 261

Query: 225 EGW-EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
            GW    G++ EA + + EM  R       V++Y + +    +   +++ LK    MK  
Sbjct: 262 NGWCNVIGSMREAERFWREMSNR--GIQRDVVSYSSIISCYSKVTNLNKVLKLFNQMKEM 319

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P  K ++  +  L K +    A+ L   M    G  PDS+TYN + + L + ++++E
Sbjct: 320 EIAPDRKVYNAVVHALAKASFVKEALNLMKAMEG-KGIAPDSVTYNSLIKPLSRARKINE 378

Query: 344 VEKFFHEMIKNEWQPT---------PLNCATAITMLL----------DAD---------- 374
            ++ F EM++    PT          L     + MLL          D D          
Sbjct: 379 AKEVFDEMLQRGLSPTIRTYHAFFRILKSGEEVFMLLEKMKETGCHPDKDTYIMLIRRFC 438

Query: 375 ---EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
              + +   ++W+ + ENG+ P  +S   L+ GL   G+L +  ++  EM  ++ L
Sbjct: 439 RWRQLDNVFKLWSEMSENGVGPDRSSYIVLIHGLFLNGKLEEAYKYYIEMKEKQFL 494



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 99/248 (39%), Gaps = 42/248 (16%)

Query: 149 TFASIFDSYCGA-GKYDEAVMSFDVMSMHGVEQDVVA-------------VNSLL----- 189
           +F  I + +C   G   EA   +  MS  G+++DVV+             +N +L     
Sbjct: 256 SFNIILNGWCNVIGSMREAERFWREMSNRGIQRDVVSYSSIISCYSKVTNLNKVLKLFNQ 315

Query: 190 -------------SAICRQENQTSRALEFLNRVK----KIVDPDGDSFAILLEGWEKEGN 232
                        +A+     + S   E LN +K    K + PD  ++  L++   +   
Sbjct: 316 MKEMEIAPDRKVYNAVVHALAKASFVKEALNLMKAMEGKGIAPDSVTYNSLIKPLSRARK 375

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + EA + F EM++R   +P  +  Y  F   L  G   +E    L  MK   C P    +
Sbjct: 376 INEAKEVFDEMLQR-GLSPT-IRTYHAFFRILKSG---EEVFMLLEKMKETGCHPDKDTY 430

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
              +    +     +  +LW   M  +G  PD  +Y ++   L  N ++ E  K++ EM 
Sbjct: 431 IMLIRRFCRWRQLDNVFKLWS-EMSENGVGPDRSSYIVLIHGLFLNGKLEEAYKYYIEMK 489

Query: 353 KNEWQPTP 360
           + ++ P P
Sbjct: 490 EKQFLPEP 497


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 164/378 (43%), Gaps = 12/378 (3%)

Query: 91  SYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SL 147
           S     +A+ FFRWAG   G +   + +N ++++L     + Q +     M + G+  + 
Sbjct: 95  SLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNT 154

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
            +F  +  S+    + D+AV  F++M     + D+     L+  +C+      +A E  +
Sbjct: 155 FSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKA-GMDEKAFEVFH 213

Query: 208 RVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
            +  +  V PD      ++    K   V+EA + FG+M E+  + P+  +AY T +  L 
Sbjct: 214 EMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQM-EKCGFPPD-AIAYNTMIDGLA 271

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           +     EALK L  M  + C PT   +   ++ L K      A +L+ +M    G  P+S
Sbjct: 272 KAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAA-SGFRPNS 330

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           + Y  +     K+ R+ E    F EM++  ++P  +     I  L  +   E A + +  
Sbjct: 331 VIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEE 390

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           ++  G  P   +   ++ GL  +GR+++  R  + M+        VT   L   F    R
Sbjct: 391 MMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGR 450

Query: 446 --SMRDIFDSLERRCKTS 461
                 + D L+ +C +S
Sbjct: 451 LDEAAQLLDELD-KCSSS 467



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 124/293 (42%), Gaps = 5/293 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+N M+D L K G  ++    +  ++ +  V +  T+  + +S C AG  + A   F VM
Sbjct: 262 AYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVM 321

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +  G   + V   SL+    +          F   V+    PD  +  ++++G  K GN 
Sbjct: 322 AASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNF 381

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E+A K+F EM+ R    P +V+ Y T +  L +  +V  A + ++ M    CFP    + 
Sbjct: 382 EQAAKSFEEMM-RGGCKP-NVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYI 439

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV-HEVEKFFHEMI 352
             LD   KL     A QL D +     + P+   Y+ + + L     V + ++  F +  
Sbjct: 440 CLLDGFCKLGRLDEAAQLLDELDKCSSS-PNLQLYSSLVKGLCDGGSVENTLDDLFEQSK 498

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
                  P  C + I  L      + A  I+  ++  G  P   + N L+ GL
Sbjct: 499 AAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGL 551



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 115/293 (39%), Gaps = 37/293 (12%)

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR-QENQTSRALEFLNRV 209
            SI    C  G+ DEA   F  M   G + D    N L++ +CR +EN+  RA   L+ +
Sbjct: 510 CSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDL 569

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL------------- 255
           + +   PD  ++  L  G  K G V+ A K   E   R  WN + V              
Sbjct: 570 EMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSR-GWNADVVAYTALCTGLCYQGQ 628

Query: 256 ---------------------AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
                                AY   +  LI+GK++++A KF   M G+   PT+  ++ 
Sbjct: 629 VDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTA 688

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +  L    +   A   ++ M+         + Y+ +     K  +V    K F +MI  
Sbjct: 689 LVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISR 748

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
              PT +  A+    L+ + + E A E+   +   G  P  A+   +L GLR 
Sbjct: 749 GNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRK 801



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 130/322 (40%), Gaps = 9/322 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R       +M+D L K+G FEQ   +   M   G   ++ T+ +I       G+   A
Sbjct: 360 GYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANA 419

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLE 225
                 M  HG   D V    LL   C+   +   A + L+ + K    P+   ++ L++
Sbjct: 420 FRIMKGMIAHGCFPDSVTYICLLDGFCKL-GRLDEAAQLLDELDKCSSSPNLQLYSSLVK 478

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G    G+VE       E  +    N +  L   + ++ L +  ++DEA +  + M  E C
Sbjct: 479 GLCDGGSVENTLDDLFEQSKAAAENLDPGLCC-SIIVGLCKTGRLDEACRIFQRMVSEGC 537

Query: 286 FPTLKFFSNALDILVKLNDST---HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
            P    ++  ++ L +  ++        L D+ MV  G  PD++TY  +   L K   V 
Sbjct: 538 KPDATTYNILINGLCRSRENRVERAFALLHDLEMV--GYLPDAVTYTPLCIGLCKIGEVD 595

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
              K   E     W    +      T L    + + A+ ++  ++  G  P  A+   ++
Sbjct: 596 RAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCII 655

Query: 403 VGLRNLGRLSDVRRFAEEMLNR 424
            GL    +L D  +F +EM+ +
Sbjct: 656 NGLIKGKKLEDACKFFDEMIGK 677


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 137/310 (44%), Gaps = 3/310 (0%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           A++ +++ L K  R E+    +  M         T+  I +  C   + D+A+ + + M+
Sbjct: 82  AYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERLCKTKRIDDALATVEEMA 141

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G++ D    N +LS +C++E      L F   VK+ ++P+  ++  L+ G  K   +E
Sbjct: 142 TRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIE 201

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A + F EM  +  + P  V +Y T +    + K +  A      M   NC P +  ++ 
Sbjct: 202 TAYELFKEMAGK-GYVPTEV-SYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTT 259

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +D L K      A ++ D  MV  G  P+  TY+ + +   K +RV E  K   +M+  
Sbjct: 260 LIDGLSKSGKVQAAAEVLD-GMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQ 318

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
              PT +     +  L  AD+ E A +++  + +    P   + N LL  L +  +L   
Sbjct: 319 GIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGA 378

Query: 415 RRFAEEMLNR 424
            R   EM+ +
Sbjct: 379 HRLYAEMIAK 388



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 164/358 (45%), Gaps = 14/358 (3%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDE 165
           +R+ P A  +N + D   K GR EQ+    + M E G  L    +  +    C  G +DE
Sbjct: 4   RRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDE 63

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A      M +   ++  +A +++++ +C+  N+   A E + ++ +   PD  ++  ++E
Sbjct: 64  AYKLLHTMRLKRFKRKAIAYSTIINWLCKL-NRVEEARELIEKMARYAPPDALTYGPIVE 122

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K   +++A  T  EM  R    P+  + Y   L  L + ++V+EA      M  +  
Sbjct: 123 RLCKTKRIDDALATVEEMATR-GIKPDAFI-YNFVLSGLCQEEKVEEARLLFEKMVKQRI 180

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P +  ++  ++ L K      A +L+   M   G  P  ++YN + +   K K +   +
Sbjct: 181 NPNVVTYNTLINGLCKAWRIETAYELFK-EMAGKGYVPTEVSYNTLIDGFCKKKDLVAAK 239

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             F +M+++   P  +   T I  L  + + + A E+ + +++ G+ P  A+ + L+ G 
Sbjct: 240 DVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGF 299

Query: 406 RNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFDSL-ERRC 458
             + R+ +  +  E+M+ + I    + Y + ++ L +A  ++      +F  + +RRC
Sbjct: 300 CKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRA--DKLEDAFKLFRGMAQRRC 355



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 3/167 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  ++D L K+G+ +     +  M + GV  ++ T++ + D +C   + DEA    + M 
Sbjct: 257 YTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMV 316

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+   VV  N LL+++CR +        F    ++   P   ++  LL        ++
Sbjct: 317 TQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLD 376

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            A++ + EM+ +    P   + Y+T    L R  +V EA + +  MK
Sbjct: 377 GAHRLYAEMIAK--GCPPDAITYDTLAWGLTRAGKVHEAQELMEKMK 421


>gi|334187687|ref|NP_197005.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635761|sp|Q9LFQ4.2|PP383_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15010, mitochondrial; Flags: Precursor
 gi|332004721|gb|AED92104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 572

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 168/374 (44%), Gaps = 20/374 (5%)

Query: 49  ISSSARIICEILAHASSD--DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG 106
           +S     I +++    SD  ++ + L    + P+ +LV E+L    +   +A  FF WAG
Sbjct: 93  VSEDVGKISKLVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAG 152

Query: 107 RGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFASIFDSYCGAGK 162
           + Q    S   ++ M+ +LGK  +F+  W  +  M++    +++  T   +   YC    
Sbjct: 153 KQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHD 212

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA-LEFLNRVKKIVDPDGDSFA 221
             +A+ +F       +E  +    SLLSA+CR +N +    L F N+ K   D    SF 
Sbjct: 213 VGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFD--AKSFN 270

Query: 222 ILLEGWEKE-GNVEEANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVDEALKFLRV 279
           I+L GW    G+  EA + + EM        +H V++Y + +    +G  +++ LK    
Sbjct: 271 IVLNGWCNVIGSPREAERVWMEMGNV---GVKHDVVSYSSMISCYSKGGSLNKVLKLFDR 327

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           MK E   P  K ++  +  L K +  + A  L   M    G  P+ +TYN + + L K +
Sbjct: 328 MKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKAR 387

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           +  E ++ F EM++    PT +    A   +L   E     E++  + +   +  E +  
Sbjct: 388 KTEEAKQVFDEMLEKGLFPT-IRTYHAFMRILRTGE-----EVFELLAKMRKMGCEPTVE 441

Query: 400 ELLVGLRNLGRLSD 413
             ++ +R L R  D
Sbjct: 442 TYIMLIRKLCRWRD 455



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 11/245 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N   +V+G     E++W     M   GV   + +++S+   Y   G  ++ +  FD M  
Sbjct: 274 NGWCNVIGSPREAERVWME---MGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKK 330

Query: 176 HGVEQDVVAVNSLLSAICRQENQT-SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             +E D    N+++ A+ +    + +R L      +K ++P+  ++  L++   K    E
Sbjct: 331 ECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTE 390

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA + F EM+E+  +    +  Y  F+  L  G++V E L  +R M    C PT++ +  
Sbjct: 391 EAKQVFDEMLEKGLFPT--IRTYHAFMRILRTGEEVFELLAKMRKM---GCEPTVETYIM 445

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +  L +  D  + + LWD M       PD  +Y ++   L  N ++ E   ++ EM   
Sbjct: 446 LIRKLCRWRDFDNVLLLWDEMKE-KTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDK 504

Query: 355 EWQPT 359
             +P 
Sbjct: 505 GMRPN 509


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 164/372 (44%), Gaps = 14/372 (3%)

Query: 80   TPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
            T  +V +VLQ    +  +A+ FF WA    G     Y  N ++  L    R ++  +A++
Sbjct: 810  TTTVVGKVLQ-GVRNGDAALGFFDWATSQEGYNHDTYTCNCLLQALL---RLKRPKDALQ 865

Query: 138  VMKEDGVLS--LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
            V +     S  + TF  +    C AG    A      M  HGV Q+V+  N ++  +C  
Sbjct: 866  VYRNKLCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSA 925

Query: 196  ENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
                S ALE    +++     PD  +++ +++   K G V++A +   +MV +   +P +
Sbjct: 926  RKLDS-ALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSK-GCSP-N 982

Query: 254  VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
            V+ Y + L  L +  ++DEA   L+ M    C P +  ++  +D   KL     A  L +
Sbjct: 983  VVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLE 1042

Query: 314  IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
              MV  G  P+ +TY ++ +   K  +  +       M++  + P      + + M    
Sbjct: 1043 -EMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKK 1101

Query: 374  DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 433
            DE E A ++ + +++ G +P   S N ++ GL    ++ +     E+ML+   +   VT 
Sbjct: 1102 DEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTF 1161

Query: 434  HKLKKAFYNESR 445
            + +  A     R
Sbjct: 1162 NTIIDAMCKTYR 1173



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 153/347 (44%), Gaps = 8/347 (2%)

Query: 116  WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            + +++D   K G+ E     V VM E G V +L T+ S+ D +C   + + A      M 
Sbjct: 1056 YTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMI 1115

Query: 175  MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
              G   +VV+ N++++ +C+        L     +     PD  +F  +++   K   V+
Sbjct: 1116 QKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVD 1175

Query: 235  EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM-KGENCFPTLKFFS 293
             A + F  +++     P +++ Y + +  L + ++ D+A   LR M + + C P +  ++
Sbjct: 1176 IAYELF-NLIQESGCTP-NLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYN 1233

Query: 294  NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
              +D L K      A +L+ + M+  G  PD +TY+++   L K + + E       M+K
Sbjct: 1234 TVIDGLCKSKRVDRAYKLF-LQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLK 1292

Query: 354  NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
            N + P  +   T I         + A+EI   +L  G  P   + +  +  L   GRL  
Sbjct: 1293 NGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQ 1352

Query: 414  VRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLE--RRC 458
                 E ML   ++   VT + L K F + S +  D  D  E  R+C
Sbjct: 1353 AGELLETMLRAGLVPDTVTYNTLLKGFCDASLT-EDAVDLFEVMRQC 1398



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 159/352 (45%), Gaps = 16/352 (4%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P++V +VLQ   D P +A+ FF WA    G +   +  N +++VL K  ++ Q  +  R
Sbjct: 92  SPEIVGKVLQRLID-PGAALVFFEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFR 150

Query: 138 VMKE-----DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
              E     D V    T++++   +  AGK   A   FD M+  G++       S+L  +
Sbjct: 151 SRIEGQWGGDTV----TYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGL 206

Query: 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           C    Q S A+     + K   PD  ++  ++ G  K   +++A +   EMV+   + P 
Sbjct: 207 C-DAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDN-GFAP- 263

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +V +Y T L    +  +V+ AL  L  M    C P +  ++  ++ L KL+    A ++ 
Sbjct: 264 NVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVM 323

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
           D  M+  G  P+ +TY  + +   +   +    +   +M +  ++P  +     + +   
Sbjct: 324 D-KMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCR 382

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            ++ E A ++   +++ G  P   + + ++ G    G+L +     E+M+ R
Sbjct: 383 RNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRR 434



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 149/373 (39%), Gaps = 49/373 (13%)

Query: 78   IPTPDLVHEVL---QLSYDSPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQM 132
            +P   ++H V+     S     SA++ F+         P  + ++ +VD L K+G+ +  
Sbjct: 908  VPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDA 967

Query: 133  WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
               V  M   G   ++ T++S+    C AGK DEA      M+  G   ++V  N+++  
Sbjct: 968  CRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDG 1027

Query: 192  ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
             C                                   K G ++EA     EMV+      
Sbjct: 1028 HC-----------------------------------KLGRIDEAYHLLEEMVD--GGCQ 1050

Query: 252  EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
             +V+ Y   L    +  + ++A+  + VM  +   P L  +++ LD+  K ++   A QL
Sbjct: 1051 PNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQL 1110

Query: 312  WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
                M+  G  P+ ++YN +   L K  +VHE      +M+ N   P  +   T I  + 
Sbjct: 1111 LS-SMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMC 1169

Query: 372  DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR-----I 426
                 +IA E++N I E+G  P   + N L+ GL    R         EM  ++     I
Sbjct: 1170 KTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDI 1229

Query: 427  LIYEVTMHKLKKA 439
            + Y   +  L K+
Sbjct: 1230 ITYNTVIDGLCKS 1242



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 143/311 (45%), Gaps = 5/311 (1%)

Query: 116  WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            +N ++D   K GR ++ ++ +  M + G   ++ T+  + D++C  GK ++A+   +VM 
Sbjct: 1021 YNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMV 1080

Query: 175  MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
              G   ++   NSLL   C+++ +  RA + L+  ++K   P+  S+  ++ G  K   V
Sbjct: 1081 EKGYVPNLFTYNSLLDMFCKKD-EVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKV 1139

Query: 234  EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             E      +M+      P+ ++ + T +  + +  +VD A +   +++   C P L  ++
Sbjct: 1140 HEGVLLLEQMLSN-NCVPD-IVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYN 1197

Query: 294  NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
            + +  L K      A  L   M    G  PD +TYN + + L K+KRV    K F +M+ 
Sbjct: 1198 SLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLS 1257

Query: 354  NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
            +   P  +  +  I+ L      + A  +   +L+NG  P   +   L+ G    G L  
Sbjct: 1258 DGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDK 1317

Query: 414  VRRFAEEMLNR 424
                 + +L++
Sbjct: 1318 ALEILQLLLSK 1328



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 144/357 (40%), Gaps = 42/357 (11%)

Query: 128 RFEQMWNAVRVM----KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           + +Q+  A RVM    +     ++ T+ ++ D +C  G  D AV     M+  G   + +
Sbjct: 312 KLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAI 371

Query: 184 AVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             N+++   CR+ N   RA + L   ++    PD  +++ ++ G+ K G + EA+    +
Sbjct: 372 TYNNIMHVFCRR-NDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQ 430

Query: 243 MVER----------------------------------FEWNPEHVLAYETFLITLIRGK 268
           M+ R                                   +  P+ V+AY   +  L + K
Sbjct: 431 MIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPD-VVAYSILIHALCKAK 489

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           ++ EA  +L VM    C+P +  +++ +D L K      A  L+D M    G  PD +TY
Sbjct: 490 RLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRA-AGVMPDVVTY 548

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           +++     K+  +    K    M + +  P  +  +  I  L  A   + A +++  +L 
Sbjct: 549 SIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLG 608

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            G  P   + N L+ GL  + ++       E M  +      +T   L     N SR
Sbjct: 609 CGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASR 665



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 121/245 (49%), Gaps = 10/245 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+++++  L K  R  +  + + VM ++     + T+ S+ D  C + + ++A + FD M
Sbjct: 477 AYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRM 536

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              GV  DVV  + ++ + C+  N  S A + L R+K+    PD  +++ L+ G  K G 
Sbjct: 537 RAAGVMPDVVTYSIVIHSFCKDNNLDS-AFKMLERMKEAKCVPDVVTYSALINGLCKAGT 595

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V++A   F EM+        +++ Y T +  L +  +V++A + L +M+ ++C P    +
Sbjct: 596 VDKAFDVFQEMLGC--GCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITY 653

Query: 293 SNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
           +  ++    L +++   + W ++  M   G  PD +TY  +   L K   +  VE+   E
Sbjct: 654 TCLIN---GLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKE 710

Query: 351 MIKNE 355
           M   E
Sbjct: 711 MEATE 715



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 115/273 (42%), Gaps = 4/273 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV-MKEDGVLSLPTFASIFDSYCGAGKYDE 165
           RG R      + ++D L K    +     +R+ +  D    +  ++ +  + C A +  E
Sbjct: 434 RGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPE 493

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    DVM  +    DVV  NS++  +C+        L F       V PD  +++I++ 
Sbjct: 494 AESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIH 553

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + K+ N++ A K    M E  +  P+ V+ Y   +  L +   VD+A    + M G  C
Sbjct: 554 SFCKDNNLDSAFKMLERMKEA-KCVPD-VVTYSALINGLCKAGTVDKAFDVFQEMLGCGC 611

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P L  ++  +D L K+N    A ++ +IM       PDS+TY  +   L    R+ E  
Sbjct: 612 APNLVTYNTLIDGLCKINKVEQAAEMLEIMRK-QSCTPDSITYTCLINGLCNASRLEEAW 670

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
           +   EM      P  +   T +  L   +  E+
Sbjct: 671 RVLREMKDKGCLPDRMTYGTLLRALQKTNNLEL 703



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 147/347 (42%), Gaps = 7/347 (2%)

Query: 97  SAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
            AV+  R    RG R +   +N ++ V  +    E+    +++M + G       +++I 
Sbjct: 353 GAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTII 412

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIV 213
             +C AGK  EA    + M   G   DV  +++L+ A+C+     S A E L   +    
Sbjct: 413 SGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDS-AQELLRMSIGMDC 471

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  +++IL+    K   + EA      MV+   + P+ V+ Y + +  L + +++++A
Sbjct: 472 APDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCY-PD-VVTYNSVVDGLCKSRRINDA 529

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
                 M+     P +  +S  +    K N+   A ++ + M       PD +TY+ +  
Sbjct: 530 FLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAK-CVPDVVTYSALIN 588

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L K   V +    F EM+     P  +   T I  L   ++ E A E+   + +    P
Sbjct: 589 GLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTP 648

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
              +   L+ GL N  RL +  R   EM ++  L   +T   L +A 
Sbjct: 649 DSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRAL 695



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/333 (19%), Positives = 138/333 (41%), Gaps = 37/333 (11%)

Query: 96  SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           S AV  FR   +        +N M++ L K+ R +     +  M ++G   ++ ++ ++ 
Sbjct: 213 SDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVL 272

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIV 213
             +C A + + A+   + M   G   DVV+  ++++ +C+ + Q   A   +++ +++  
Sbjct: 273 HGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLD-QVDEACRVMDKMIQRGC 331

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVER------FEWN----------------- 250
            P+  ++  L++G+ + G+++ A +   +M ER        +N                 
Sbjct: 332 QPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQ 391

Query: 251 ----------PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
                     P   + Y T +    +  ++ EA   L  M    C P +   S  +D L 
Sbjct: 392 VLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALC 451

Query: 301 KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
           K      A +L   M +     PD + Y+++   L K KR+ E E +   M+KN   P  
Sbjct: 452 KAAAIDSAQELLR-MSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDV 510

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           +   + +  L  +     A  +++ +   G++P
Sbjct: 511 VTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMP 543



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 123/260 (47%), Gaps = 7/260 (2%)

Query: 116  WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            +N ++D + K  R +  +    +++E G   +L T+ S+    C + ++D+A      M+
Sbjct: 1161 FNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMT 1220

Query: 175  -MHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGN 232
               G   D++  N+++  +C+ + +  RA + FL  +   + PD  +++I++    K   
Sbjct: 1221 RKQGCSPDIITYNTVIDGLCKSK-RVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRF 1279

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            ++EAN    E++ +  ++P   + Y T +    +   +D+AL+ L+++  +  +P +  F
Sbjct: 1280 MDEANNVL-ELMLKNGFDP-GAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTF 1337

Query: 293  SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
            S  +D L K      A +L + M+   G  PD++TYN + +         +    F  M 
Sbjct: 1338 SIFIDWLSKRGRLRQAGELLETML-RAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMR 1396

Query: 353  KNEWQPTPLNCATAITMLLD 372
            +   +P      T +  L+D
Sbjct: 1397 QCGCEPDNATYTTLVGHLVD 1416



 Score = 41.6 bits (96), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 51/254 (20%), Positives = 107/254 (42%), Gaps = 24/254 (9%)

Query: 116  WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            +++ +D L K GR  Q    +  M   G++    T+ ++   +C A   ++AV  F+VM 
Sbjct: 1337 FSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMR 1396

Query: 175  MHGVEQDVVAVNSLLSAICRQEN------QTSRAL---------EFLNRVKKIVDPDGDS 219
              G E D     +L+  +  +++      + S+++         E  ++++  ++ + D 
Sbjct: 1397 QCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADV 1456

Query: 220  --FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
                 +++ + K G+ ++A K F  M +R      +V+ +   L   +  KQ ++A    
Sbjct: 1457 RLGCAIVDMFGKCGSPQDARKVFEGMDQR------NVVLWSAMLGVYVFHKQEEQAFGLW 1510

Query: 278  RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
            RVM  E   P    F + L +         AV  +  +   +G  P    ++ + + L +
Sbjct: 1511 RVMGLEGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGR 1570

Query: 338  NKRVHEVEKFFHEM 351
               V+E E     M
Sbjct: 1571 LGLVNEAEDLMLGM 1584


>gi|9755668|emb|CAC01820.1| putative protein [Arabidopsis thaliana]
          Length = 532

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 148/320 (46%), Gaps = 14/320 (4%)

Query: 49  ISSSARIICEILAHASSD--DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG 106
           +S     I +++    SD  ++ + L    + P+ +LV E+L    +   +A  FF WAG
Sbjct: 53  VSEDVGKISKLVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAG 112

Query: 107 RGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFASIFDSYCGAGK 162
           + Q    S   ++ M+ +LGK  +F+  W  +  M++    +++  T   +   YC    
Sbjct: 113 KQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHD 172

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA-LEFLNRVKKIVDPDGDSFA 221
             +A+ +F       +E  +    SLLSA+CR +N +    L F N+ K   D    SF 
Sbjct: 173 VGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFD--AKSFN 230

Query: 222 ILLEGWEKE-GNVEEANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVDEALKFLRV 279
           I+L GW    G+  EA + + EM        +H V++Y + +    +G  +++ LK    
Sbjct: 231 IVLNGWCNVIGSPREAERVWMEMGNV---GVKHDVVSYSSMISCYSKGGSLNKVLKLFDR 287

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           MK E   P  K ++  +  L K +  + A  L   M    G  P+ +TYN + + L K +
Sbjct: 288 MKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKAR 347

Query: 340 RVHEVEKFFHEMIKNEWQPT 359
           +  E ++ F EM++    PT
Sbjct: 348 KTEEAKQVFDEMLEKGLFPT 367



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 11/245 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N   +V+G     E++W     M   GV   + +++S+   Y   G  ++ +  FD M  
Sbjct: 234 NGWCNVIGSPREAERVWME---MGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKK 290

Query: 176 HGVEQDVVAVNSLLSAICRQENQT-SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             +E D    N+++ A+ +    + +R L      +K ++P+  ++  L++   K    E
Sbjct: 291 ECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTE 350

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA + F EM+E+  +    +  Y  F+  L  G++V E L  +R M    C PT++ +  
Sbjct: 351 EAKQVFDEMLEKGLFPT--IRTYHAFMRILRTGEEVFELLAKMRKM---GCEPTVETYIM 405

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +  L +  D  + + LWD M       PD  +Y ++   L  N ++ E   ++ EM   
Sbjct: 406 LIRKLCRWRDFDNVLLLWDEMKE-KTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDK 464

Query: 355 EWQPT 359
             +P 
Sbjct: 465 GMRPN 469


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 152/374 (40%), Gaps = 45/374 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG       ++ ++  L K    ++       M ++GV+     + S+   YC +GK  E
Sbjct: 237 RGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKE 296

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  F  M  HGVE DVV   +L+  +C+    T     F + VK+   PD  ++  LL 
Sbjct: 297 AIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLH 356

Query: 226 GWEKEG-----------------------------------NVEEANKTFGEMVERFEWN 250
           G+  EG                                    V+EA   F  M ++   N
Sbjct: 357 GYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQ-GLN 415

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ ++ Y T L  L    +VD+AL     +K E   P +  F+  +  L    D    V+
Sbjct: 416 PD-IVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTC-DKWDKVE 473

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI-TM 369
                M+  G   D++ +N I   L K  RV E +  F  M++   +P      T I   
Sbjct: 474 ELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGY 533

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRR 425
            LD    E A+++   ++ NG+ P + + N ++ G    GR+ D      EM    +N  
Sbjct: 534 CLDGKMDE-AMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPG 592

Query: 426 ILIYEVTMHKLKKA 439
           I+ YE+ +  L +A
Sbjct: 593 IVTYEMLLQGLFQA 606



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 176/448 (39%), Gaps = 48/448 (10%)

Query: 38  PRFPTHLDAPYISSSARII--CEILAHASSDDIESALACTGIIPTPDLVHEV--LQLSYD 93
           PR      AP I++   +I  C  L       ++ A A  G + T  L HE   LQ S  
Sbjct: 88  PRAGATSAAPNIATYGIVIGCCRRLGR-----LDLAFATVGRVITTGLRHEPNPLQSSSQ 142

Query: 94  SPSSAVDFFRWAGRGQRLSP--------------YAWNLMVDVLGKNGRFEQMWNAVRVM 139
            P          GR  R+                +++ +++  L  +   +Q  + + +M
Sbjct: 143 GP-----LCTAGGRAMRMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIM 197

Query: 140 ---KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
              K    L +  + ++ +     G+ D+A   FD M   G   DVV  +S++SA+ + +
Sbjct: 198 ADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQ 257

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
                   F   VK  V PD   +  L+ G+   G  +EA   F +M  R    P+ V+ 
Sbjct: 258 AMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMC-RHGVEPD-VVT 315

Query: 257 YETFLITLIRGKQVDEALKFLR--VMKGE----NCFPTLKFFSNALDILVKLNDSTHAVQ 310
           Y   +  L +  +  EA K     V +G       + TL         LV+++D      
Sbjct: 316 YTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHD------ 369

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           L D+MM   G       +NMI     K+ +V E    F  M +    P  +N  T + +L
Sbjct: 370 LLDLMMK-KGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDIL 428

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
             A   + A+  +N +   G+ P       L+ GL    +   V   A EM++R I +  
Sbjct: 429 CTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDT 488

Query: 431 VTMHKLKKAFYNESRSM--RDIFDSLER 456
           +  + +      + R +  +++FD + R
Sbjct: 489 IFFNAIMGNLCKKGRVIEAKNLFDLMVR 516



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 109/254 (42%), Gaps = 16/254 (6%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           +G +L  + +N+++    K+ + ++       M++ G+   +  + ++ D  C AG+ D+
Sbjct: 377 KGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDD 436

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAIC---RQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           A+  F+ +   G+  ++V   +L+  +C   + +     A E ++R    +  D   F  
Sbjct: 437 ALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRG---ICLDTIFFNA 493

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           ++    K+G V EA   F  MV R    P +   Y T +       ++DEA+K L VM  
Sbjct: 494 IMGNLCKKGRVIEAKNLFDLMV-RIGIEP-NTNTYNTLIDGYCLDGKMDEAMKLLGVMVF 551

Query: 283 ENCFP---TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
               P   T     N      ++ D    ++  D      G  P  +TY M+ + L +  
Sbjct: 552 NGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMD----GKGVNPGIVTYEMLLQGLFQAG 607

Query: 340 RVHEVEKFFHEMIK 353
           R    ++ +  MIK
Sbjct: 608 RTVAAKELYLRMIK 621


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 151/326 (46%), Gaps = 12/326 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG     + +N ++  LGK GR ++    +  M+  G    + T++S+     G GK  E
Sbjct: 143 RGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLIT---GLGKDGE 199

Query: 166 AVMSFDV---MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFA 221
            V +F +   M   G + D +   +L+ A+ +   +   ALE L+ +K + V P   ++ 
Sbjct: 200 TVKAFKLFQEMKRRGRKPDSITFTALMDALGKA-GRVDDALELLDEMKERGVKPGVVTYN 258

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+ G+ K G++ EA     EM +R    P+ V+ Y   +  LI+  Q+DEA + L+ M+
Sbjct: 259 ALIAGFGKVGDLVEAYNLLDEM-KRNGCKPD-VVTYSCLITGLIKASQLDEACQVLKKME 316

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            E C P    ++  ++ L K      A +L+D  M   G  PD +TY+ +   L K  RV
Sbjct: 317 KEGCPPDTITYNTLINGLGKAGLLNDAGRLFD-RMKSKGCNPDVVTYSTLITALGKAARV 375

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
                 F EM     QP      + IT+L  A + + A  +++ +   G+ P   + N  
Sbjct: 376 ESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAF 435

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRIL 427
           L  L   GR  + R+  E+M    +L
Sbjct: 436 LNSLGRGGRFKEARKIFEDMKESGLL 461



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 144/317 (45%), Gaps = 6/317 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + + + +N +VD LGK G+F++    +  M+++G +  + T+  +  +   AG+  E
Sbjct: 73  KGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSE 132

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILL 224
           A   F  M   G   D    NSL+  + +   ++ +A+E L  +++    PD  +++ L+
Sbjct: 133 AFTLFAEMRERGCVPDTFTYNSLIYGLGKV-GRSQKAMELLEEMERHGCPPDVMTYSSLI 191

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  K+G   +A K F EM  R    P+ +  +   +  L +  +VD+AL+ L  MK   
Sbjct: 192 TGLGKDGETVKAFKLFQEMKRRGR-KPDSI-TFTALMDALGKAGRVDDALELLDEMKERG 249

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P +  ++  +    K+ D   A  L D  M  +G  PD +TY+ +   LIK  ++ E 
Sbjct: 250 VKPGVVTYNALIAGFGKVGDLVEAYNLLD-EMKRNGCKPDVVTYSCLITGLIKASQLDEA 308

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            +   +M K    P  +   T I  L  A     A  +++ +   G  P   + + L+  
Sbjct: 309 CQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITA 368

Query: 405 LRNLGRLSDVRRFAEEM 421
           L    R+       EEM
Sbjct: 369 LGKAARVESACVLFEEM 385



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 126/274 (45%), Gaps = 5/274 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ S+ ++   AG+ +EA + F+ +       DVV+ + L++++ R   +   ALE +  
Sbjct: 11  TYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRA-GKWEAALEVVAE 69

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++ K   P+  ++  L++   K G  +EA +   EM  R       V  Y   + TL + 
Sbjct: 70  MQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEM--RDNGCVPDVRTYNCLISTLGKA 127

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            ++ EA      M+   C P    +++ +  L K+  S  A++L +  M  HG  PD +T
Sbjct: 128 GRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLE-EMERHGCPPDVMT 186

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y+ +   L K+    +  K F EM +   +P  +     +  L  A   + A+E+ + + 
Sbjct: 187 YSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMK 246

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           E G+ P   + N L+ G   +G L +     +EM
Sbjct: 247 ERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEM 280



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 136/317 (42%), Gaps = 6/317 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG +     +N ++   GK G   + +N +  MK +G    + T++ +      A + DE
Sbjct: 248 RGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDE 307

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A      M   G   D +  N+L++ + +     + A    +R+K K  +PD  +++ L+
Sbjct: 308 ACQVLKKMEKEGCPPDTITYNTLINGLGKA-GLLNDAGRLFDRMKSKGCNPDVVTYSTLI 366

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
               K   VE A   F EM E     P+ +  Y + +  L +  QVD+A +    M+G+ 
Sbjct: 367 TALGKAARVESACVLFEEM-ESVGIQPD-LFTYCSIITVLGKAGQVDDADRLFSEMRGKG 424

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P +  ++  L+ L +      A ++++ M    G  PD  TY+ +   L K K V + 
Sbjct: 425 LSPDVITYNAFLNSLGRGGRFKEARKIFEDMKE-SGLLPDVATYDALLLGLSKTKEVDDA 483

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
                E+I+       L     + +L      + A E+  +    G+ P  +S N L+  
Sbjct: 484 CGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDA 543

Query: 405 LRNLGRLSDVRRFAEEM 421
           L   GR+S+     E++
Sbjct: 544 LAKAGRVSEAFNTLEDL 560



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 109/260 (41%), Gaps = 3/260 (1%)

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           +VV  NSLL+A+ +        L F         PD  S++ L+    + G  E A +  
Sbjct: 8   NVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVV 67

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            EM  + +    ++  Y T +  L +  Q DEAL+ L  M+   C P ++ ++  +  L 
Sbjct: 68  AEM--QAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLG 125

Query: 301 KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
           K    + A  L+   M   G  PD+ TYN +   L K  R  +  +   EM ++   P  
Sbjct: 126 KAGRLSEAFTLF-AEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDV 184

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 420
           +  ++ IT L    E   A +++  +   G  P   +   L+  L   GR+ D     +E
Sbjct: 185 MTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDE 244

Query: 421 MLNRRILIYEVTMHKLKKAF 440
           M  R +    VT + L   F
Sbjct: 245 MKERGVKPGVVTYNALIAGF 264



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 125/312 (40%), Gaps = 4/312 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ ++  L K  + ++    ++ M+++G      T+ ++ +    AG  ++A   FD M 
Sbjct: 292 YSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMK 351

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   DVV  ++L++A+ +     S  + F       + PD  ++  ++    K G V+
Sbjct: 352 SKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVD 411

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A++ F EM  R +     V+ Y  FL +L RG +  EA K    MK     P +  +  
Sbjct: 412 DADRLFSEM--RGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDA 469

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            L  L K  +   A  L   ++    AF DSL ++   E L     V E  +        
Sbjct: 470 LLLGLSKTKEVDDACGLLKELIEQGCAF-DSLKFDECLEILTSWGNVDEAHELLQFANSK 528

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
              P   +    I  L  A     A      + E G  P   S + L+  L   G++   
Sbjct: 529 GLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTA 588

Query: 415 RRFAEEMLNRRI 426
               EEM  R +
Sbjct: 589 FELLEEMSKRGL 600



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 12/203 (5%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           RG+ LSP    +N  ++ LG+ GRF++       MKE G+L  + T+ ++        + 
Sbjct: 421 RGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEV 480

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFA 221
           D+A      +   G   D +  +  L  +    N  +    L+F N   K + P   S+ 
Sbjct: 481 DDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFAN--SKGLWPGASSYN 538

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++   K G V EA  T  ++ E  +     +++Y + +  L +  Q+D A + L  M 
Sbjct: 539 ALIDALAKAGRVSEAFNTLEDLKE--QGGKPDIVSYSSLISALGQTGQIDTAFELLEEMS 596

Query: 282 GENCFPTLKFFSNALDILVKLND 304
                 + + +SN   ++ KL D
Sbjct: 597 KRGLKLSPRSYSN---LVRKLQD 616



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 44/99 (44%)

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           P+ +TYN +   L K  +  E +  F E+   +W P  ++ +  I  L  A + E A+E+
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
              +   G  P   + N L+  L   G+  +  R   EM
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEM 105


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 152/374 (40%), Gaps = 45/374 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG       ++ ++  L K    ++       M ++GV+     + S+   YC +GK  E
Sbjct: 236 RGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKE 295

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  F  M  HGVE DVV   +L+  +C+    T     F + VK+   PD  ++  LL 
Sbjct: 296 AIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLH 355

Query: 226 GWEKEG-----------------------------------NVEEANKTFGEMVERFEWN 250
           G+  EG                                    V+EA   F  M ++   N
Sbjct: 356 GYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQ-GLN 414

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ ++ Y T L  L    +VD+AL     +K E   P +  F+  +  L    D    V+
Sbjct: 415 PD-IVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTC-DKWDKVE 472

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI-TM 369
                M+  G   D++ +N I   L K  RV E +  F  M++   +P      T I   
Sbjct: 473 ELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGY 532

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRR 425
            LD    E A+++   ++ NG+ P + + N ++ G    GR+ D      EM    +N  
Sbjct: 533 CLDGKMDE-AMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPG 591

Query: 426 ILIYEVTMHKLKKA 439
           I+ YE+ +  L +A
Sbjct: 592 IVTYEMLLQGLFQA 605



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 164/397 (41%), Gaps = 24/397 (6%)

Query: 75  TGIIPTPDLVHEVLQLSYDS--PSSAVDFF--RWAGRGQRLSPYAWNLMVDVLGKNGRFE 130
           TG+  +P L   +L+   D    S A+D    R    G +   +++ +++  L  +   +
Sbjct: 128 TGLRMSPILFSPLLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQ 187

Query: 131 QMWNAVRVM---KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           Q  + + +M   K    L +  + ++ +     G+ D+A   FD M   G   DVV  +S
Sbjct: 188 QALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSS 247

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           ++SA+ + +        F   VK  V PD   +  L+ G+   G  +EA   F +M  R 
Sbjct: 248 IISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMC-RH 306

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLR--VMKG----ENCFPTLKFFSNALDILVK 301
              P+ V+ Y   +  L +  +  EA K     V +G       + TL         LV+
Sbjct: 307 GVEPD-VVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVE 365

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
           ++D      L D+MM   G       +NMI     K+ +V E    F  M +    P  +
Sbjct: 366 MHD------LLDLMMK-KGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIV 418

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           N  T + +L  A   + A+  +N +   G+ P       L+ GL    +   V   A EM
Sbjct: 419 NYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEM 478

Query: 422 LNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLER 456
           ++R I +  +  + +      + R +  +++FD + R
Sbjct: 479 IDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVR 515



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 113/266 (42%), Gaps = 4/266 (1%)

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKI-VDPDGD 218
           G+ D A  +   +   G+    +  + LL  +C    +TS A++  L R+ ++   PD  
Sbjct: 113 GRLDLAFATVGRVITTGLRMSPILFSPLLKGLC-DRRRTSDAMDIVLRRMPELGCKPDLF 171

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+ ILL+G   +   ++A      M +     P  V+AY T +  L+R  Q+D+A     
Sbjct: 172 SYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFD 231

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M      P +  +S+ +  L K      A Q++   MV +G  PD + Y  +      +
Sbjct: 232 AMLDRGPSPDVVTYSSIISALSKTQAMDKATQVF-TRMVKNGVMPDCIMYTSLVHGYCSS 290

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
            +  E    F +M ++  +P  +     +  L    +   A +I++ +++ G  P   + 
Sbjct: 291 GKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTY 350

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNR 424
             LL G    G L ++    + M+ +
Sbjct: 351 GTLLHGYATEGALVEMHDLLDLMMKK 376



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 109/254 (42%), Gaps = 16/254 (6%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           +G +L  + +N+++    K+ + ++       M++ G+   +  + ++ D  C AG+ D+
Sbjct: 376 KGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDD 435

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAIC---RQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           A+  F+ +   G+  ++V   +L+  +C   + +     A E ++R    +  D   F  
Sbjct: 436 ALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRG---ICLDTIFFNA 492

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           ++    K+G V EA   F  MV R    P +   Y T +       ++DEA+K L VM  
Sbjct: 493 IMGNLCKKGRVIEAKNLFDLMV-RIGIEP-NTNTYNTLIDGYCLDGKMDEAMKLLGVMVF 550

Query: 283 ENCFP---TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
               P   T     N      ++ D    ++  D      G  P  +TY M+ + L +  
Sbjct: 551 NGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMD----GKGVNPGIVTYEMLLQGLFQAG 606

Query: 340 RVHEVEKFFHEMIK 353
           R    ++ +  MIK
Sbjct: 607 RTVAAKELYLRMIK 620


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 129/288 (44%), Gaps = 6/288 (2%)

Query: 139 MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M E G + ++ TF  + D  C A +  +A    +VM+  G   + +  N ++ A+C+ E 
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCK-EG 59

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +++ A  ++  ++ + V P   ++ IL++G+ KE  +  A +   EM  R    P HV  
Sbjct: 60  RSAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGH-EPNHV-T 117

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           Y TFL  L +  +VD+AL   R M  +     +  ++  +D L +      A  L D  M
Sbjct: 118 YNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLD-EM 176

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
              G  P    YN I   L K  R++E  K F  M  +   P  L     +         
Sbjct: 177 ENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRI 236

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           + A+ +   +   G+ P E   N L+  L   GR+S+  R  +EM++R
Sbjct: 237 DDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISR 284



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 103/255 (40%), Gaps = 4/255 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           A RG   +   +N ++D L K GR  + +  +  M+  GV  ++ T+  + D +C   K 
Sbjct: 37  AERGCFPNALVFNGIMDALCKEGRSAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKL 96

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
             A+     M+  G E + V  N+ L  +C+          F    +K +  D   +  L
Sbjct: 97  HRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTL 156

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G  + G + EA     EM E     P+    Y   L  L +G +++EA K  + M G 
Sbjct: 157 IDGLCQAGKLAEAYSLLDEM-ENSGCVPKPG-CYNAILSWLCKGSRINEAHKLFKRMTGS 214

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P    F   +    + +    A+ L    M   G  P  + YN + + L +  RV E
Sbjct: 215 GILPDWLTFGMMVFGYCRGHRIDDALLLLQ-QMKSAGLAPREVIYNTLIDALNRAGRVSE 273

Query: 344 VEKFFHEMIKNEWQP 358
             +   EMI     P
Sbjct: 274 AYRLLQEMISRGLSP 288



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 1/147 (0%)

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M  + C PT+  F   +D L K N  T A +L ++M    G FP++L +N I + L K  
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVM-AERGCFPNALVFNGIMDALCKEG 59

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           R  E   +   M      PT +     I      ++   A+EI   +   G  P   + N
Sbjct: 60  RSAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYN 119

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRI 426
             L GL   G++ D       M  ++I
Sbjct: 120 TFLHGLCKYGKVDDALALFRAMTEKKI 146


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 136/293 (46%), Gaps = 5/293 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +  N +VD L K G   +  + V +M   GV  ++ T+ ++ D +C   + D AV  FD 
Sbjct: 281 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDT 340

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M       +V++ N+L++  C+ ++       F    ++ + P+  ++  L+ G    G 
Sbjct: 341 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 400

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A   F EMV R +  P+ ++ Y T    L + + +D+A+  L+ ++G N  P ++ +
Sbjct: 401 LQDAISLFHEMVARGQI-PD-LVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIY 458

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  LD + +  +   A  L+   +   G  P+  TYN++   L K   + E  K F EM 
Sbjct: 459 TTILDGMCRAGELEDARDLFS-NLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMN 517

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           KN   P            L  +E    IE+   +L  G   ++ S   LLVG+
Sbjct: 518 KNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARG-FSVDVSTTTLLVGM 569



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 9/239 (3%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-DPDGDSFAILLEGWEKEG 231
           M   G+  DV  +  +++++C   N+   A   L ++ K+   PD  +F  L+ G   EG
Sbjct: 96  MDSFGIPPDVYTLAIVINSLCHL-NRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEG 154

Query: 232 NVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            + EA   F +M+ E F+ N   V+ Y T +  L +      A++ LR M+  NC P + 
Sbjct: 155 KIGEALHLFDKMIGEGFQPN---VVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVV 211

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            FS  +D L K    T A  ++   M+  G  P+ +TYN +   L K      V    +E
Sbjct: 212 VFSTLIDSLCKDRQVTEAFNIFS-EMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNE 270

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG--LRN 407
           M+ ++  P      T +  L        A ++ + ++  G+ P   + N L+ G  LRN
Sbjct: 271 MVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRN 329



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/358 (20%), Positives = 158/358 (44%), Gaps = 7/358 (1%)

Query: 96  SSAVDFFRWAGRGQ-RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           S+A+   R   +G  + +   ++ ++D L K+ +  + +N    M   G+  ++ T+ S+
Sbjct: 192 SAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSL 251

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKI 212
               C   ++       + M    +  DV  +N+++ A+C+ E   + A + ++  + + 
Sbjct: 252 IHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCK-EGMVAEAHDVVDMMIHRG 310

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V+P+  ++  L++G      V+ A K F  MV +      +V++Y T +    + + VD+
Sbjct: 311 VEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHK--DCVANVISYNTLINGYCKIQSVDK 368

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A+     M  +   P    ++  +  L  +     A+ L+   MV  G  PD +TY  + 
Sbjct: 369 AMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFH-EMVARGQIPDLVTYRTLS 427

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
           + L KN+ + +       +  + W P      T +  +  A E E A ++++ +   G+ 
Sbjct: 428 DYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQ 487

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 450
           P   + N ++ GL   G L++  +   EM        + T + + + F   + ++R I
Sbjct: 488 PNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 545



 Score = 42.0 bits (97), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 113/301 (37%), Gaps = 50/301 (16%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT-----SRALEFLNRVKKIVDPDGD 218
           DEA+ +F+ M         V  N LL++I + ++ +     SR ++        + PD  
Sbjct: 52  DEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFG-----IPPDVY 106

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           + AI++        V+ A     +++ +    P+      T   TLIRG  V+  +    
Sbjct: 107 TLAIVINSLCHLNRVDFAFSALAKIL-KLGHQPD-----ATTFTTLIRGLCVEGKI---- 156

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
              GE                        A+ L+D  M+  G  P+ +TY  +   L K 
Sbjct: 157 ---GE------------------------ALHLFD-KMIGEGFQPNVVTYGTLINGLCKV 188

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
                  +    M +   QP  +  +T I  L    +   A  I++ ++  GI P   + 
Sbjct: 189 GNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTY 248

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES--RSMRDIFDSLER 456
           N L+ GL  L     V     EM++ +I+    T++ +  A   E       D+ D +  
Sbjct: 249 NSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIH 308

Query: 457 R 457
           R
Sbjct: 309 R 309



 Score = 41.6 bits (96), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 33/177 (18%), Positives = 75/177 (42%), Gaps = 6/177 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCG 159
           F     RGQ      +  + D L KN   ++    ++ ++       +  + +I D  C 
Sbjct: 408 FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCR 467

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           AG+ ++A   F  +S  G++ +V   N ++  +C+Q      +  F    K    P+  +
Sbjct: 468 AGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCT 527

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALK 275
           + ++  G+ +        +   EM+ R F  +    ++  T L+ ++    +D+++K
Sbjct: 528 YNLITRGFLRNNEALRTIELLEEMLARGFSVD----VSTTTLLVGMLSDDGLDQSVK 580


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 165/378 (43%), Gaps = 41/378 (10%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G +++ Y  N+M++ L KN + E   + +  M+E GV   + T+ ++ ++YC  G  +EA
Sbjct: 353 GVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEA 412

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
               D MS  G++  V   N++++ +C+   +  RA   L+ + KI + PD  ++ ILL 
Sbjct: 413 FELMDSMSGKGLKPCVFTYNAIINGLCKT-GKYLRAKGVLDEMLKIGMSPDTATYNILLV 471

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              +  N+ +A + F EM    +     ++++   +  L +   +D+ALK+ R MK    
Sbjct: 472 ECCRNDNMMDAERIFDEMPS--QGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGL 529

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    ++  +    +    + A+++ D M+   G   D +TYN I   L K K + E +
Sbjct: 530 APDNVIYTILIGGFCRNGVMSEALKVRDEMLE-QGCXLDVVTYNTILNGLCKEKMLSEAD 588

Query: 346 KFFHE-----------------------------------MIKNEWQPTPLNCATAITML 370
           + F E                                   MI+   +P  +   T I   
Sbjct: 589 ELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGF 648

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
               E E   E+WN ++   I P   S   L+ G  N+G +S+  R  +EM+ +      
Sbjct: 649 CKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATI 708

Query: 431 VTMHKLKKAFYNESRSMR 448
           +T + + K +     +++
Sbjct: 709 ITCNTIVKGYCRAGNAVK 726



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 147/337 (43%), Gaps = 14/337 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFDVM 173
           +++ ++ +L KNG  +Q     R MK  G+       +I    +C  G   EA+   D M
Sbjct: 500 SFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEM 559

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   DVV  N++L+ +C+++  +     F    ++ V PD  +F  L+ G+ K+GN+
Sbjct: 560 LEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNM 619

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A   F  M++R    P+ V+ Y T +    +G ++++  +    M     +P    + 
Sbjct: 620 NKAVTLFEMMIQR-NLKPD-VVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYG 677

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             ++    +   + A +LWD  MV  G     +T N I +   +     + ++F   M+ 
Sbjct: 678 ILINGYCNMGCVSEAFRLWD-EMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLL 736

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               P  +   T I   +  +  + A  + N +  +G+LP   + N +L G    GR+ +
Sbjct: 737 KGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQE 796

Query: 414 VRRFAEEMLNRRI----------LIYEVTMHKLKKAF 440
                 +M+ R +          +   VT + LK+AF
Sbjct: 797 AELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAF 833



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 148/341 (43%), Gaps = 6/341 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G+G +   + +N +++ L K G++ +    +  M + G+     T+  +    C     
Sbjct: 420 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 479

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            +A   FD M   GV  D+V+ ++L+  + +      +AL++   +K   + PD   + I
Sbjct: 480 MDAERIFDEMPSQGVVPDLVSFSALIGLLSKN-GCLDQALKYFRDMKNAGLAPDNVIYTI 538

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+ + G + EA K   EM+E  +     V+ Y T L  L + K + EA +    M  
Sbjct: 539 LIGGFCRNGVMSEALKVRDEMLE--QGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTE 596

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
              FP    F+  ++   K  +   AV L++ MM+     PD +TYN + +   K   + 
Sbjct: 597 RGVFPDFYTFTTLINGYXKDGNMNKAVTLFE-MMIQRNLKPDVVTYNTLIDGFCKGSEME 655

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +V + +++MI     P  ++    I    +      A  +W+ ++E G      + N ++
Sbjct: 656 KVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIV 715

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
            G    G       F   ML + I+   +T + L   F  E
Sbjct: 716 KGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKE 756



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 128/290 (44%), Gaps = 8/290 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G  L    +N +++ L K     +       M E GV     TF ++ + Y   G  ++
Sbjct: 562 QGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNK 621

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILL 224
           AV  F++M    ++ DVV  N+L+   C+  ++  +  E  N  + + + P+  S+ IL+
Sbjct: 622 AVTLFEMMIQRNLKPDVVTYNTLIDGFCKG-SEMEKVNELWNDMISRRIYPNHISYGILI 680

Query: 225 EGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
            G+   G V EA + + EMVE+ FE     ++   T +    R     +A +FL  M  +
Sbjct: 681 NGYCNMGCVSEAFRLWDEMVEKGFE---ATIITCNTIVKGYCRAGNAVKADEFLSNMLLK 737

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P    ++  ++  +K  +   A  L +  M   G  PD +TYN+I     +  R+ E
Sbjct: 738 GIVPDGITYNTLINGFIKEENMDRAFALVN-KMENSGLLPDVITYNVILNGFSRQGRMQE 796

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            E    +MI+    P      + I   +  +  + A  + + +L+ G +P
Sbjct: 797 AELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 846



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/334 (19%), Positives = 135/334 (40%), Gaps = 41/334 (12%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
           +P  ++L+V    +  +  +   A RV+K  G+ +S+    S+       G  D A   +
Sbjct: 287 NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 346

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEK 229
             +   GV+ +V  +N +++A+C+ + +      FL+ + +K V PD  ++  L+  + +
Sbjct: 347 QEVVRSGVQVNVYTLNIMINALCKNQ-KIENTKSFLSDMEEKGVFPDVVTYNTLINAYCR 405

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +G +E                                     EA + +  M G+   P +
Sbjct: 406 QGLLE-------------------------------------EAFELMDSMSGKGLKPCV 428

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             ++  ++ L K      A  + D M+   G  PD+ TYN++     +N  + + E+ F 
Sbjct: 429 FTYNAIINGLCKTGKYLRAKGVLDEMLKI-GMSPDTATYNILLVECCRNDNMMDAERIFD 487

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM      P  ++ +  I +L      + A++ +  +   G+ P       L+ G    G
Sbjct: 488 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNG 547

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
            +S+  +  +EML +   +  VT + +      E
Sbjct: 548 VMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKE 581


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 140/335 (41%), Gaps = 48/335 (14%)

Query: 98  AVDFFR---WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLPTFASI 153
           AV  F    W+G    +  Y  N +++ L KNG         R M+++ G  ++ T+ +I
Sbjct: 185 AVGLFNEMVWSGHEPNVISY--NTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTI 242

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKK 211
            DS C     +EAV     M   G+  DVV  N++L   C   Q N+ +R   F   V +
Sbjct: 243 IDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRL--FKEMVGR 300

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            V PD  +F IL++G  KEG V EA      M E+      +   Y   +       Q+D
Sbjct: 301 NVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEK--GAEPNAYTYNALMDGYCLHNQMD 358

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           EA+K L +M G+ C P L                                     +YN++
Sbjct: 359 EAIKVLGIMIGKGCAPNLS------------------------------------SYNIL 382

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
                K+KR++E ++   EM +    P  +  +T +  L     P  A+ ++  +  +G+
Sbjct: 383 INGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGL 442

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           LP   + + LL G    G L +  +  +EM  RRI
Sbjct: 443 LPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRI 477



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 124/285 (43%), Gaps = 8/285 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F    GR        +N++VD L K G   +       M E G   +  T+ ++ D YC 
Sbjct: 294 FKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCL 353

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDG 217
             + DEA+    +M   G   ++ + N L++  C+ +  N+  R L  ++  +K + PD 
Sbjct: 354 HNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMS--EKNLTPDT 411

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +++ L++G  + G   EA   F EM       P+ ++AY   L    +   +DEALK L
Sbjct: 412 VTYSTLMQGLCQVGRPREALNLFKEMCSS-GLLPD-LMAYSILLDGFCKHGHLDEALKLL 469

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
           + M      P +  ++  +  +        A +L+  +    G  PD  TYN++ + L+K
Sbjct: 470 KEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSA-DGIRPDIWTYNVMIKGLLK 528

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
                E  +FF +M  + + P   +    I   L   +   AI++
Sbjct: 529 EGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQL 573



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 112/266 (42%), Gaps = 45/266 (16%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   + Y +N ++D    + + ++    + +M   G   +L ++  + + YC + + +E
Sbjct: 335 KGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNE 394

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFA 221
           A      MS   +  D V  ++L+  +C    Q  R  E LN  K++      PD  +++
Sbjct: 395 AKRLLSEMSEKNLTPDTVTYSTLMQGLC----QVGRPREALNLFKEMCSSGLLPDLMAYS 450

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL-------------------------- 255
           ILL+G+ K G+++EA K   EM ER    P  +L                          
Sbjct: 451 ILLDGFCKHGHLDEALKLLKEMHER-RIKPNIILYTILIRGMFIAGKLEVAKELFSKLSA 509

Query: 256 --------AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
                    Y   +  L++    DEA +F R M+ +   P    ++  +   ++  DS+ 
Sbjct: 510 DGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSST 569

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFE 333
           A+QL D  MV      DS T+ M+ +
Sbjct: 570 AIQLID-EMVGKRFSADSSTFQMLLD 594



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 91/202 (45%), Gaps = 6/202 (2%)

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +V +    +  L R   VD A+  +  M      P    F+  ++ L        AV L+
Sbjct: 130 NVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLF 189

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
           +  MV+ G  P+ ++YN +   L KN       + F +M +N  +P  +   T I  L  
Sbjct: 190 N-EMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCK 248

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
                 A+E  + +++ GI P   + N +L G  +LG+L++  R  +EM+ R ++   VT
Sbjct: 249 DRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVT 308

Query: 433 MHKL-----KKAFYNESRSMRD 449
            + L     K+   +E+R + +
Sbjct: 309 FNILVDGLCKEGMVSEARCVSE 330



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 5/173 (2%)

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           +D+AL     M   N  P++  F   L  + K    + AV L + M +F G   +  + N
Sbjct: 77  IDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLF-GVTHNVYSLN 135

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
           ++  CL +   V        +M K   QP  +   T I  L +  + + A+ ++N ++ +
Sbjct: 136 VLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWS 195

Query: 390 GILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNR---RILIYEVTMHKLKK 438
           G  P   S N ++ GL +N   +  VR F +   NR    ++ Y   +  L K
Sbjct: 196 GHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCK 248


>gi|334183891|ref|NP_177483.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806278|sp|Q9FX35.2|PP117_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g73400, mitochondrial; Flags: Precursor
 gi|332197336|gb|AEE35457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 568

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 103/449 (22%), Positives = 181/449 (40%), Gaps = 71/449 (15%)

Query: 66  DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVL 123
           DD+E AL  + +  T  +V ++LQ       +A  FF WAG  +  S  P A+N M+D+L
Sbjct: 110 DDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDIL 169

Query: 124 G----KNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
                KN +F  + + +  MK +   V+ +     I   YC   +Y   V  F       
Sbjct: 170 SSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYC--ERYLTHVQKFAKRKRIR 227

Query: 178 VEQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           V+   ++ A N LL A+C+           L R++  V PD ++F +L  GW +  + ++
Sbjct: 228 VKTQPEINAFNMLLDALCKC-GLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRVRDPKK 286

Query: 236 ANKTFGEMVERFEWNPE---HVLAYETF-------------------------------- 260
           A K   EM+E     PE   +  A +TF                                
Sbjct: 287 AMKLLEEMIEA-GHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFA 345

Query: 261 --LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
             ++ L +  + +E  + +  M    C P +  + + ++ +        A +  D  M  
Sbjct: 346 LMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLD-EMSN 404

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            G  PD +TYN     L +N++  E  K +  M+++   P+       I+M  + D+P+ 
Sbjct: 405 KGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDG 464

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI-LIYEV------ 431
           A   W  + +   +    +   ++ GL +  R  +     EE++N+ + L Y V      
Sbjct: 465 AFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSFLM 524

Query: 432 ---------TMHKLK---KAFYNESRSMR 448
                     +HK+    K FYN S + R
Sbjct: 525 RLSEVGNLKAIHKVSEHMKKFYNHSMARR 553


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 135/269 (50%), Gaps = 5/269 (1%)

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
           A ++++A    + M+  G   +VV  N L+S +CR+      A+E L ++ K    P+  
Sbjct: 64  AERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRR-GLVEPAMEVLEQIPKYGCTPNSL 122

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  LL  + K+  +++A      MV R  + P+ +++Y T L  L R  +VD A+  L 
Sbjct: 123 SYNPLLHAFCKQKKMDKAMAFVELMVSRGCY-PD-IVSYNTLLTALCRNGEVDVAIDLLH 180

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            +KG+ C P L  ++  +D L K   +  A++L D  M+  G  PD +TY  I   L + 
Sbjct: 181 QLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLD-EMISKGLQPDIITYTTIASGLCRE 239

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
            ++ E  + F ++     +PT +     +  L    E   AI++++Y++ NG +P E++ 
Sbjct: 240 DKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTY 299

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
             L+ GL   G + + R    ++ +R ++
Sbjct: 300 TILVEGLAYEGLVKEARDLLGQLCSRGVV 328



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 118/240 (49%), Gaps = 8/240 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDV 172
            +N+++  L + G  E     +  + + G    SL ++  +  ++C   K D+A+   ++
Sbjct: 88  TFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSL-SYNPLLHAFCKQKKMDKAMAFVEL 146

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M   G   D+V+ N+LL+A+CR   +   A++ L+++K K   P   S+  +++G  K G
Sbjct: 147 MVSRGCYPDIVSYNTLLTALCRN-GEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAG 205

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             +EA +   EM+ +    P+ ++ Y T    L R  +++EA++    ++     PT+  
Sbjct: 206 KTKEALELLDEMISK-GLQPD-IITYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVL 263

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  L  L K  ++ +A+ L+   M+ +G  P+  TY ++ E L     V E      ++
Sbjct: 264 YNAILLGLCKRRETHNAIDLFS-YMISNGCMPNESTYTILVEGLAYEGLVKEARDLLGQL 322



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 114/249 (45%), Gaps = 7/249 (2%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  ++ ++L G  +EG V++A + F E +  +   P  V +Y   L  L   ++ ++A 
Sbjct: 14  PDIITYNVVLNGICQEGRVDDAME-FLENLPSYGGEPNTV-SYNIVLKGLFTAERWEDAE 71

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           K +  M  + C P +  F+  +  L +      A+++ +  +  +G  P+SL+YN +   
Sbjct: 72  KLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLE-QIPKYGCTPNSLSYNPLLHA 130

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
             K K++ +   F   M+     P  ++  T +T L    E ++AI++ + +   G  P+
Sbjct: 131 FCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPV 190

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
             S N ++ GL   G+  +     +EM+++ +    +T   +      E +    I +++
Sbjct: 191 LISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDK----IEEAI 246

Query: 455 ERRCKTSQM 463
              CK   M
Sbjct: 247 RTFCKVQDM 255



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 6/153 (3%)

Query: 98  AVDFFRWAGRGQRLSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A+D      +G+  SP   ++N ++D L K G+ ++    +  M   G+   + T+ +I 
Sbjct: 175 AIDLLHQL-KGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIA 233

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIV 213
              C   K +EA+ +F  +   G+   VV  N++L  +C++  +T  A++ F   +    
Sbjct: 234 SGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRR-ETHNAIDLFSYMISNGC 292

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
            P+  ++ IL+EG   EG V+EA    G++  R
Sbjct: 293 MPNESTYTILVEGLAYEGLVKEARDLLGQLCSR 325


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 142/302 (47%), Gaps = 12/302 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G + +   +  +++V+ K+G+       +R M+E  + L    ++ I D  C  G  D A
Sbjct: 223 GCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNA 282

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
              F+ M M G+  +++  N L+   C        A    + +K+ ++P+  +F++L++ 
Sbjct: 283 FNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDS 342

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + KEG + EA +   EM+ R    P+ +  Y + +    +   +D+A + + +M  + C 
Sbjct: 343 FVKEGKLREAEELHKEMIHR-GIAPDTI-TYTSLIDGFCKENHLDKANQMVDLMVSKGCD 400

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P ++ F+  ++   K N     ++L+   M   G   D++TYN + +   +  +++  ++
Sbjct: 401 PNIRTFNILINGYCKANRIDDGLELFR-KMSLRGVVADTVTYNTLIQGFCELGKLNVAKE 459

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            F EM+  +  P  +     +  L D  E E A+EI+  I        E S  EL +G+ 
Sbjct: 460 LFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI--------EKSKMELDIGIY 511

Query: 407 NL 408
           N+
Sbjct: 512 NI 513



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 156/348 (44%), Gaps = 12/348 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++ +++ L   GR  +    V  M E G    L T  ++ +  C +GK  EA++  D M
Sbjct: 160 TFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKM 219

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
             +G + + V    +L+ +C+   QT+ A+E L +++ + +  D   ++I+++G  K G+
Sbjct: 220 VEYGCQPNAVTYGPVLNVMCKS-GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGS 278

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++ A   F EM    +    +++ Y   +       + D+  K LR M      P +  F
Sbjct: 279 LDNAFNLFNEM--EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTF 336

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           S  +D  VK      A +L    M+  G  PD++TY  + +   K   + +  +    M+
Sbjct: 337 SVLIDSFVKEGKLREAEELHK-EMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMV 395

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P        I     A+  +  +E++  +   G++    + N L+ G   LG+L+
Sbjct: 396 SKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLN 455

Query: 413 DVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
             +   +EM++R+    I+ Y++ +  L      ES    +IF+ +E+
Sbjct: 456 VAKELFQEMVSRKVPPNIVTYKILLDGL--CDNGESEKALEIFEKIEK 501



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/302 (20%), Positives = 127/302 (42%), Gaps = 8/302 (2%)

Query: 147 LPT---FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           LPT   F+ +F +     +YD  +     M + G+  ++  ++ +++  CR   +   A 
Sbjct: 85  LPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCR-KLCLAF 143

Query: 204 EFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
             + ++ K+  +P+  +F+ L+ G   EG V EA +    MVE     P+ ++   T + 
Sbjct: 144 SAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVE-MGHKPD-LITINTLVN 201

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
            L    +  EA+  +  M    C P    +   L+++ K   +  A++L   M   +   
Sbjct: 202 GLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL 261

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
            D++ Y++I + L K+  +      F+EM         +     I    +A   +   ++
Sbjct: 262 -DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKL 320

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
              +++  I P   + + L+      G+L +     +EM++R I    +T   L   F  
Sbjct: 321 LRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCK 380

Query: 443 ES 444
           E+
Sbjct: 381 EN 382



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 1/130 (0%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + +++D L  NG  E+      ++ K    L +  +  I    C A K D+A   F  +
Sbjct: 475 TYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL 534

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
            + GV+  V   N ++  +C++   +   L F    +    PDG ++ IL+     +G+ 
Sbjct: 535 PLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDA 594

Query: 234 EEANKTFGEM 243
            ++ K   E+
Sbjct: 595 TKSVKLIEEL 604


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 165/378 (43%), Gaps = 41/378 (10%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G +++ Y  N+M++ L KN + E   + +  M+E GV   + T+ ++ ++YC  G  +EA
Sbjct: 249 GVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEA 308

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
               D MS  G++  V   N++++ +C+   +  RA   L+ + KI + PD  ++ ILL 
Sbjct: 309 FELMDSMSGKGLKPCVFTYNAIINGLCKT-GKYLRAKGVLDEMLKIGMSPDTATYNILLV 367

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              +  N+ +A + F EM    +     ++++   +  L +   +D+ALK+ R MK    
Sbjct: 368 ECCRNDNMMDAERIFDEMPS--QGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGL 425

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    ++  +    +    + A+++ D M+   G   D +TYN I   L K K + E +
Sbjct: 426 APDNVIYTILIGGFCRNGVMSEALKVRDEMLE-QGCVLDVVTYNTILNGLCKEKMLSEAD 484

Query: 346 KFFHE-----------------------------------MIKNEWQPTPLNCATAITML 370
           + F E                                   MI+   +P  +   T I   
Sbjct: 485 ELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGF 544

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
               E E   E+WN ++   I P   S   L+ G  N+G +S+  R  +EM+ +      
Sbjct: 545 CKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATI 604

Query: 431 VTMHKLKKAFYNESRSMR 448
           +T + + K +     +++
Sbjct: 605 ITCNTIVKGYCRAGNAVK 622



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 147/337 (43%), Gaps = 14/337 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFDVM 173
           +++ ++ +L KNG  +Q     R MK  G+       +I    +C  G   EA+   D M
Sbjct: 396 SFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEM 455

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   DVV  N++L+ +C+++  +     F    ++ V PD  +F  L+ G+ K+GN+
Sbjct: 456 LEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNM 515

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A   F  M++R    P+ V+ Y T +    +G ++++  +    M     +P    + 
Sbjct: 516 NKAVTLFEMMIQR-NLKPD-VVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYG 573

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             ++    +   + A +LWD  MV  G     +T N I +   +     + ++F   M+ 
Sbjct: 574 ILINGYCNMGCVSEAFRLWD-EMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLL 632

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               P  +   T I   +  +  + A  + N +  +G+LP   + N +L G    GR+ +
Sbjct: 633 KGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQE 692

Query: 414 VRRFAEEMLNRRI----------LIYEVTMHKLKKAF 440
                 +M+ R +          +   VT + LK+AF
Sbjct: 693 AELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAF 729



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 148/341 (43%), Gaps = 6/341 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G+G +   + +N +++ L K G++ +    +  M + G+     T+  +    C     
Sbjct: 316 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 375

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            +A   FD M   GV  D+V+ ++L+  + +      +AL++   +K   + PD   + I
Sbjct: 376 MDAERIFDEMPSQGVVPDLVSFSALIGLLSKN-GCLDQALKYFRDMKNAGLAPDNVIYTI 434

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+ + G + EA K   EM+E  +     V+ Y T L  L + K + EA +    M  
Sbjct: 435 LIGGFCRNGVMSEALKVRDEMLE--QGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTE 492

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
              FP    F+  ++   K  +   AV L++ MM+     PD +TYN + +   K   + 
Sbjct: 493 RGVFPDFYTFTTLINGYSKDGNMNKAVTLFE-MMIQRNLKPDVVTYNTLIDGFCKGSEME 551

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +V + +++MI     P  ++    I    +      A  +W+ ++E G      + N ++
Sbjct: 552 KVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIV 611

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
            G    G       F   ML + I+   +T + L   F  E
Sbjct: 612 KGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKE 652



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 128/290 (44%), Gaps = 8/290 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G  L    +N +++ L K     +       M E GV     TF ++ + Y   G  ++
Sbjct: 458 QGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNK 517

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILL 224
           AV  F++M    ++ DVV  N+L+   C+  ++  +  E  N  + + + P+  S+ IL+
Sbjct: 518 AVTLFEMMIQRNLKPDVVTYNTLIDGFCKG-SEMEKVNELWNDMISRRIYPNHISYGILI 576

Query: 225 EGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
            G+   G V EA + + EMVE+ FE     ++   T +    R     +A +FL  M  +
Sbjct: 577 NGYCNMGCVSEAFRLWDEMVEKGFE---ATIITCNTIVKGYCRAGNAVKADEFLSNMLLK 633

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P    ++  ++  +K  +   A  L +  M   G  PD +TYN+I     +  R+ E
Sbjct: 634 GIVPDGITYNTLINGFIKEENMDRAFALVN-KMENSGLLPDVITYNVILNGFSRQGRMQE 692

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            E    +MI+    P      + I   +  +  + A  + + +L+ G +P
Sbjct: 693 AELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 742



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 65/334 (19%), Positives = 136/334 (40%), Gaps = 41/334 (12%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
           +P  ++L+V    +  +  +   A RV+K  G+ +S+    S+       G  D A   +
Sbjct: 183 NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 242

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEK 229
             +   GV+ +V  +N +++A+C+ + +      FL+ + +K V PD  ++  L+  + +
Sbjct: 243 QEVVRSGVQVNVYTLNIMINALCKNQ-KIENTKSFLSDMEEKGVFPDVVTYNTLINAYCR 301

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +G +E                                     EA + +  M G+   P +
Sbjct: 302 QGLLE-------------------------------------EAFELMDSMSGKGLKPCV 324

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             ++  ++ L K      A  + D M+   G  PD+ TYN++     +N  + + E+ F 
Sbjct: 325 FTYNAIINGLCKTGKYLRAKGVLDEMLKI-GMSPDTATYNILLVECCRNDNMMDAERIFD 383

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM      P  ++ +  I +L      + A++ +  +   G+ P       L+ G    G
Sbjct: 384 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNG 443

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
            +S+  +  +EML +  ++  VT + +      E
Sbjct: 444 VMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKE 477


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/448 (21%), Positives = 182/448 (40%), Gaps = 72/448 (16%)

Query: 45  DAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW 104
           DA   +     +C+    A + D   ++ C   + T  ++ + L  +   P +   F + 
Sbjct: 93  DAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKM 152

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
             +G   + + +N++++   K  +  + +  ++ MKE G+  ++ T++++   +C   K 
Sbjct: 153 KKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKV 212

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ----------ENQTSRALE--------- 204
           D A   F  M  +G   ++V  N+LLS +CR           +    R L+         
Sbjct: 213 DTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTL 272

Query: 205 --FLNRVKKI--------------VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
              L +  KI                PD  +++ L+ G  K G ++EA K F +M E   
Sbjct: 273 MAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMREN-S 331

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             P+ V+ +   +  L +G ++ EA + L  M+  NC P +  +S+ +D L K      A
Sbjct: 332 CEPD-VVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDA 390

Query: 309 VQLWDIMMV-------------FHG---------------------AFPDSLTYNMIFEC 334
            +++  M+V              HG                       PD +TYN + + 
Sbjct: 391 QEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDG 450

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L K  R  E  + F +M      P  +  +  I      +  ++A  +++ +L+  +LP 
Sbjct: 451 LCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPD 510

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEML 422
             + + L+ G  N G + D  R  EEM+
Sbjct: 511 VVTFSTLVEGYCNAGLVDDAERLLEEMV 538



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 151/335 (45%), Gaps = 19/335 (5%)

Query: 95  PSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151
           P +A+ FF WA + Q    + Y +N + + L +  R ++  + ++     G+  ++ T+A
Sbjct: 4   PDAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYA 63

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
            +    C +G  D+A    + M   G   D    N ++ A+C+  N T++AL++   ++ 
Sbjct: 64  VVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARN-TAKALDYFRSME- 121

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF----EWNPEHVLAYETFLITLIRG 267
             + +  ++ I+++G  K   + EA   F +M ++     EW       Y   +    + 
Sbjct: 122 -CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWT------YNVLINGFCKV 174

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +V  A   L+ MK     P +  +S  +    +      A +L+   MV +G  P+ +T
Sbjct: 175 HKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFR-QMVENGCMPNLVT 233

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +   L +N  + E  +   EM +   QP   +  T +  L    + ++A++++    
Sbjct: 234 YNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDN- 292

Query: 388 ENGILPLEASA-NELLVGLRNLGRLSDVRRFAEEM 421
            NG  P +  A + L+ GL   GRL +  +  E+M
Sbjct: 293 SNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKM 327



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 134/314 (42%), Gaps = 22/314 (7%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++ D  C  G+  EA   F  M       DV+  + L+   C+ E        F + 
Sbjct: 443 TYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDM 502

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +K+ V PD  +F+ L+EG+   G V++A +   EMV   + +P+ V  Y + +    +  
Sbjct: 503 LKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVAS-DCSPD-VYTYTSLVDGFCKVG 560

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           ++ EA + L+ M    C P +  ++  +D   +    T A +L +  MV +G  P+ +TY
Sbjct: 561 RMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLE-EMVGNGVQPNVITY 619

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT---AITMLLDA----DEPEIAIE 381
             +         + E  K    + ++E      NC     A  +++D          A+E
Sbjct: 620 RSLIGGFCGTGDLEEARKILERLERDE------NCKADMFAYRVMMDGLCRTGRMSAALE 673

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM-LNRR----ILIYEVTMHKL 436
           +   I ++G  P       L+ GL     L       EEM L+R+       YE  + +L
Sbjct: 674 LLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQEL 733

Query: 437 -KKAFYNESRSMRD 449
            ++  + E+ ++ D
Sbjct: 734 AREGRHEEANALAD 747



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 91/209 (43%), Gaps = 1/209 (0%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ S+ D +C  G+  EA      M+  G + +VV   +L+ A CR    T         
Sbjct: 548 TYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEM 607

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V   V P+  ++  L+ G+   G++EEA K   E +ER E     + AY   +  L R  
Sbjct: 608 VGNGVQPNVITYRSLIGGFCGTGDLEEARKIL-ERLERDENCKADMFAYRVMMDGLCRTG 666

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           ++  AL+ L  +K     P    +   +  L +  +   A+++ + M +   + P++  Y
Sbjct: 667 RMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAY 726

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
             + + L +  R  E      E++ N+ Q
Sbjct: 727 EAVIQELAREGRHEEANALADELLGNKGQ 755



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 8/250 (3%)

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G + +V   N L  A+ R            N     + P+  ++A++++G  K G++++
Sbjct: 18  QGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDK 77

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLI-TLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           A +   EM E     P    A   F+I  L + +   +AL + R M+   C   +  ++ 
Sbjct: 78  ACELLEEMRES---GPVPDAAIYNFVIHALCKARNTAKALDYFRSME---CEKNVITWTI 131

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +D L K N    A   +   M   G  P+  TYN++     K  +VH       EM ++
Sbjct: 132 MIDGLCKANRLPEATTYF-AKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKES 190

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
              P  +  +T I       + + A +++  ++ENG +P   + N LL GL   G + + 
Sbjct: 191 GLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEA 250

Query: 415 RRFAEEMLNR 424
               +EM  R
Sbjct: 251 YELLDEMRER 260


>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 451

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 146/337 (43%), Gaps = 11/337 (3%)

Query: 62  HASSDDIESALACTGIIP-TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY---AWN 117
           H + DD    +  T   P TP+LV+ VL+  ++    A+ FF +     R   +   +++
Sbjct: 36  HQTLDD--QFILSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFD 93

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           L +D+  +      +W+ +  M+   +   P TFA + + Y  +GK D+AV  F  M  H
Sbjct: 94  LAIDIAARLHIHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEH 153

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G  QD+ + N++L  +C+ + +  +A E    ++     D  ++ +++ GW       +A
Sbjct: 154 GCFQDLASFNTILDVLCKSK-RVEKAYELFRALRGRFSADTVTYNVIVNGWCLIKRTPKA 212

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            +   EMV+R   NP ++  Y T L    R  Q+ +A +F   MK  NC   +  ++  +
Sbjct: 213 LEVLKEMVDR-GINP-NLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVV 270

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
                  +      ++D  M+  G  P   TYN   + L K   V      F EM++  +
Sbjct: 271 HGFGVAGEIKRTRNVFD-EMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGY 329

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           +P        I  L  A +     E+   +   G  P
Sbjct: 330 EPNVTTYNVLIRGLFHAGKFSRGEELMQRMENEGCEP 366



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 98/216 (45%), Gaps = 12/216 (5%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + P   +FAI+ E +   G  ++A K F  M E   +  + + ++ T L  L + K+V++
Sbjct: 120 IGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEHGCF--QDLASFNTILDVLCKSKRVEK 177

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVK----LNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           A +  R ++G     T+ +     +++V     +  +  A+++    MV  G  P+  TY
Sbjct: 178 AYELFRALRGRFSADTVTY-----NVIVNGWCLIKRTPKALEVLK-EMVDRGINPNLTTY 231

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N + +   +  ++ +  +FF EM K   +   +   T +     A E +    +++ ++ 
Sbjct: 232 NTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTRNVFDEMIR 291

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            G+LP  A+ N  +  L     + +     EEM+ +
Sbjct: 292 EGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRK 327



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 76/186 (40%), Gaps = 7/186 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           RG   +   +N M+    + G+  Q W     MK+    + + T+ ++   +  AG+   
Sbjct: 222 RGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKR 281

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
               FD M   GV   V   N+ +  +C++++  +  + F   V+K  +P+  ++ +L+ 
Sbjct: 282 TRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIR 341

Query: 226 GWEKEGNVEEANKTFGEMVERF--EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           G    G          E+++R   E    +   Y   +       +V++AL     M   
Sbjct: 342 GLFHAGKFSRGE----ELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGTG 397

Query: 284 NCFPTL 289
           +C P L
Sbjct: 398 DCLPNL 403


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 136/293 (46%), Gaps = 5/293 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +  N +VD L K G   +  + V +M   GV  ++ T+ ++ D +C   + D AV  FD 
Sbjct: 221 FTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDT 280

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M       +V++ N+L++  C+ ++       F    ++ + P+  ++  L+ G    G 
Sbjct: 281 MVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 340

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A   F EMV R +  P+ ++ Y T    L + + +D+A+  L+ ++G N  P ++ +
Sbjct: 341 LQDAISLFHEMVARGQI-PD-LVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIY 398

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  LD + +  +   A  L+   +   G  P+  TYN++   L K   + E  K F EM 
Sbjct: 399 TTILDGMCRAGELEDARDLFS-NLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMN 457

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           KN   P            L  +E    IE+   +L  G   ++ S   LLVG+
Sbjct: 458 KNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARG-FSVDVSTTTLLVGM 509



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/352 (19%), Positives = 154/352 (43%), Gaps = 6/352 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +  G G + +   +  +++ L K+ +  + +N    M   G+  ++ T+ S+    C 
Sbjct: 138 FDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCK 197

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
             ++       + M    +  DV  +N+++ A+C+ E   + A + ++  + + V+P+  
Sbjct: 198 LCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCK-EGMVAEAHDVVDMMIHRGVEPNVV 256

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  L++G      V+ A K F  MV +      +V++Y T +    + + VD+A+    
Sbjct: 257 TYNALMDGHCLRNEVDVAVKVFDTMVHK--DCVANVISYNTLINGYCKIQSVDKAMYLFE 314

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M  +   P    ++  +  L  +     A+ L+   MV  G  PD +TY  + + L KN
Sbjct: 315 EMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFH-EMVARGQIPDLVTYRTLSDYLCKN 373

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
           + + +       +  + W P      T +  +  A E E A ++++ +   G+ P   + 
Sbjct: 374 RHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTY 433

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 450
           N ++ GL   G L++  +   EM        + T + + + F   + ++R I
Sbjct: 434 NIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 485



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 115/243 (47%), Gaps = 6/243 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++ +VD L K G      + V +M + GV   + T+ ++ D +C   + DEAV  FD M
Sbjct: 710 VFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTM 769

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G   +V + N L++  C Q  +  +A+  L ++  + +  D  ++  L+ G    G 
Sbjct: 770 VHKGCVPNVRSYNILINGYC-QIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGR 828

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++ A   F EMV   +  P+ ++ Y   L  L +   + EA+  L+ ++G N    +  +
Sbjct: 829 LQHAIALFHEMVASGQI-PD-LVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVY 886

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           + A+D + +  +   A  L+   +   G  PD  TYN++   L K   + E  K F +M 
Sbjct: 887 NIAIDGMCRAGELEAARDLFS-NLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMD 945

Query: 353 KNE 355
           +N+
Sbjct: 946 END 948



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 117/279 (41%), Gaps = 15/279 (5%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-DPDGDSFAILLEGWEKEG 231
           M   G+  DV  +  +++++C   N+   A   L ++ K+   PD  +F  L+ G   EG
Sbjct: 71  MDSFGIPPDVYTLAIVINSLCHL-NRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEG 129

Query: 232 NVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            + EA   F +M+ E F+ N   V+ Y T +  L + +QV EA      M  +   P + 
Sbjct: 130 KIGEALHLFDKMIGEGFQPN---VVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIV 186

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +++ +  L KL +  H   L +  MV     PD  T N + + L K   V E       
Sbjct: 187 TYNSLIHGLCKLCEWKHVTTLMN-EMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDM 245

Query: 351 MIKNEWQPTPLNCATAITMLLDA----DEPEIAIEIWNYILENGILPLEASANELLVGLR 406
           MI    +P           L+D     +E ++A+++++ ++    +    S N L+ G  
Sbjct: 246 MIHRGVEPN----VVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYC 301

Query: 407 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            +  +       EEM  + +    VT + L     +  R
Sbjct: 302 KIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGR 340



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 127/315 (40%), Gaps = 6/315 (1%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S   +N ++  + K      + +  R M   G+   + T A + +S C   + D A  + 
Sbjct: 44  STVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSAL 103

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             +   G + D     +L+  +C  E +   AL   ++ + +   P+  ++  L+ G  K
Sbjct: 104 AKILKLGHQPDATTFTTLIRGLC-VEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 162

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +  V EA   F EM+ +   +P +++ Y + +  L +  +       +  M      P +
Sbjct: 163 DRQVTEAFNIFSEMITK-GISP-NIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDV 220

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
              +  +D L K      A  + D MM+  G  P+ +TYN + +       V    K F 
Sbjct: 221 FTLNTVVDALCKEGMVAEAHDVVD-MMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFD 279

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
            M+  +     ++  T I         + A+ ++  +    + P   + N L+ GL ++G
Sbjct: 280 TMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVG 339

Query: 410 RLSDVRRFAEEMLNR 424
           RL D      EM+ R
Sbjct: 340 RLQDAISLFHEMVAR 354



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQ---ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
           M   G+  D+   NSL+ A+C     ++ T+   E +N   KI+ P+   F+ +++   K
Sbjct: 664 MITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVN--SKIM-PNVVVFSTVVDALCK 720

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           EG +  A+     M++R    P+ V+ Y   +       ++DEA+K    M  + C P +
Sbjct: 721 EGMIAIAHDVVDMMIKR-GVEPD-VVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNV 778

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
           + ++  ++   ++     A+ L +  M   G   D++TYN +   L    R+      FH
Sbjct: 779 RSYNILINGYCQIQRMDKAMGLLE-QMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFH 837

Query: 350 EMIKNEWQP 358
           EM+ +   P
Sbjct: 838 EMVASGQIP 846



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 91/228 (39%), Gaps = 7/228 (3%)

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA  TF  M+ +    P   + +   L ++ + K     L   R M      P +   
Sbjct: 26  LDEALSTFNRMLHK--QPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 83

Query: 293 SNALDILVKLNDSTHAVQ-LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +  ++ L  LN    A   L  I+ + H   PD+ T+  +   L    ++ E    F +M
Sbjct: 84  AIVINSLCHLNRVDFAFSALAKILKLGHQ--PDATTFTTLIRGLCVEGKIGEALHLFDKM 141

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           I   +QP  +   T I  L    +   A  I++ ++  GI P   + N L+ GL  L   
Sbjct: 142 IGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEW 201

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES--RSMRDIFDSLERR 457
             V     EM++ +I+    T++ +  A   E       D+ D +  R
Sbjct: 202 KHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHR 249



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++  L   GR +        M   G +  L T+  + D  C      EA++    +
Sbjct: 815 TYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAI 874

Query: 174 SMHGVEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
               ++ D++  N  +  +CR  E + +R L F N   K + PD  ++ I++ G  K G 
Sbjct: 875 EGSNLDADILVYNIAIDGMCRAGELEAARDL-FSNLSSKGLQPDVRTYNIMIHGLCKRGL 933

Query: 233 VEEANKTFGEMVERFEWN 250
           ++EANK F +M E   W+
Sbjct: 934 LDEANKLFRKMDENDIWS 951



 Score = 42.0 bits (97), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 33/177 (18%), Positives = 75/177 (42%), Gaps = 6/177 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCG 159
           F     RGQ      +  + D L KN   ++    ++ ++       +  + +I D  C 
Sbjct: 348 FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCR 407

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           AG+ ++A   F  +S  G++ +V   N ++  +C+Q      +  F    K    P+  +
Sbjct: 408 AGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCT 467

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALK 275
           + ++  G+ +        +   EM+ R F  +    ++  T L+ ++    +D+++K
Sbjct: 468 YNLITRGFLRNNEALRTIELLEEMLARGFSVD----VSTTTLLVGMLSDDGLDQSVK 520


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 147/313 (46%), Gaps = 7/313 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +NL++  L K+ + E+     +  ++ GV L + T++ + D++  AG+  +A+  F  
Sbjct: 302 FTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYN 360

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M   G   D V  N L+S + +Q  +   ALE L  + +K + PD  ++ I+++     G
Sbjct: 361 MQKAGCMPDTVVYNVLISCLGKQ-GKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCG 419

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             E+A   FG M++R + +P+ V+ Y T L  L + ++ DEA      M+   C P L  
Sbjct: 420 RYEKAYSFFG-MMKRRKHSPD-VVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTT 477

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           F   +D L K      A++     +V  G  P+S  YN +     ++ +V +  + F +M
Sbjct: 478 FGTLIDTLAKAGRMEDALE-QSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDM 536

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           I+    P  +     +          +A+E+   ++  G  P  A+ N L+  L   G++
Sbjct: 537 IECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQV 596

Query: 412 SDVRRFAEEMLNR 424
            D     +EM+ +
Sbjct: 597 EDAYTLFKEMIAK 609



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 133/312 (42%), Gaps = 7/312 (2%)

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFD 171
            + + ++V+   + G+  ++ + + + + DG  LS   +  I   +   G+  EA   F+
Sbjct: 231 AFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFE 290

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKE 230
                    DV   N LL A+C+ + Q   AL      ++  V  D  +++ L++ + K 
Sbjct: 291 STMTKESVPDVFTYN-LLIALCKSK-QLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKA 348

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G   +A + F  M ++    P+ V+ Y   +  L +  +VDEAL+ L  M  +   P  +
Sbjct: 349 GRAAKALEVFYNM-QKAGCMPDTVV-YNVLISCLGKQGKVDEALELLEDMNRKGIMPDCR 406

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            ++  +D+L        A   +  MM      PD +TYN +   L K +R  E    F E
Sbjct: 407 TYNIVIDVLSSCGRYEKAYSFFG-MMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDE 465

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M  N+  P      T I  L  A   E A+E    +++ G  P     N L+ G    G+
Sbjct: 466 MQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQ 525

Query: 411 LSDVRRFAEEML 422
           +       ++M+
Sbjct: 526 VDKGYELFQDMI 537



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 131/316 (41%), Gaps = 25/316 (7%)

Query: 59  ILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL------- 111
           ++A   S  +E AL          +V +V   SY      +D F  AGR  +        
Sbjct: 307 LIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSY-----LMDAFGKAGRAAKALEVFYNM 361

Query: 112 -------SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
                      +N+++  LGK G+ ++    +  M   G++    T+  + D     G+Y
Sbjct: 362 QKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRY 421

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           ++A   F +M       DVV  N+LL+ + ++  +T  A +  + ++     PD  +F  
Sbjct: 422 EKAYSFFGMMKRRKHSPDVVTYNTLLNGL-KKLRRTDEACDLFDEMQANKCMPDLTTFGT 480

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++   K G +E+A +    +V+       ++  Y   +    R  QVD+  +  + M  
Sbjct: 481 LIDTLAKAGRMEDALEQSARLVKMGHAPNSYI--YNALISGFCRSGQVDKGYELFQDMIE 538

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
            +CFP    ++  +    +   ++ A++L    MV  G  P   TYN++   L    +V 
Sbjct: 539 CSCFPDSITYTILVLGFSRRGHTSMAMELLQ-EMVREGHTPALATYNVLIRSLSMAGQVE 597

Query: 343 EVEKFFHEMIKNEWQP 358
           +    F EMI   + P
Sbjct: 598 DAYTLFKEMIAKGFNP 613



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 144/368 (39%), Gaps = 26/368 (7%)

Query: 66  DDIESALACTGIIPTPDLV-HEVLQLSYDSPSS---AVDFFRWAGRGQRLSPYA--WNLM 119
           DD+     C      PD+V +  L   Y        A+D FR   +     P A  ++ +
Sbjct: 113 DDMRETCDCA-----PDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTL 167

Query: 120 VDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
           V  L K  R        + M   G+ + +    ++    C  G   +A      M+ H  
Sbjct: 168 VIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAC 227

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA-----ILLEGWEKEGNV 233
            +D      L++A CR   Q      F+    ++   DG + +      +++G+ + G +
Sbjct: 228 ARDAFTYGILVNAHCR-AGQMHEVASFM----ELARHDGCALSAVNYNFIIQGFIRCGRL 282

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA + F   + + E  P+ V  Y   LI L + KQ++EAL   +  +       +  +S
Sbjct: 283 AEATQLFESTMTK-ESVPD-VFTYN-LLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYS 339

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D   K   +  A++++   M   G  PD++ YN++  CL K  +V E  +   +M +
Sbjct: 340 YLMDAFGKAGRAAKALEVF-YNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNR 398

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               P        I +L      E A   +  +      P   + N LL GL+ L R  +
Sbjct: 399 KGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDE 458

Query: 414 VRRFAEEM 421
                +EM
Sbjct: 459 ACDLFDEM 466



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 142/356 (39%), Gaps = 30/356 (8%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY----CGAGKYDEAVMSF 170
           A+N ++    K G  ++  +  R +K++G  S    A  FD+     C   +  +A+  F
Sbjct: 127 AYNTLIAGYCKAGDGDRALDMFRRLKQEG--SCKPNAVSFDTLVIFLCKMSRATDALAVF 184

Query: 171 DVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
             M   G++ DV   N+L+   CR     Q  R L  +         D  ++ IL+    
Sbjct: 185 QEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMT--AHACARDAFTYGILVNAHC 242

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           + G + E   +F E+  R +      + Y   +   IR  ++ EA +       +   P 
Sbjct: 243 RAGQMHEV-ASFMELA-RHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPD 300

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFH-----GAFPDSLTYNMIFECLIKNKRVHE 343
           + F  N L  L K      + QL + + +F      G   D  TY+ + +   K  R  +
Sbjct: 301 V-FTYNLLIALCK------SKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAK 353

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
             + F+ M K    P  +     I+ L    + + A+E+   +   GI+P   + N ++ 
Sbjct: 354 ALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVID 413

Query: 404 GLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDIFDSLE 455
            L + GR      F   M  R+    ++ Y   ++ LKK     +    D+FD ++
Sbjct: 414 VLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKK--LRRTDEACDLFDEMQ 467



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 74/363 (20%), Positives = 134/363 (36%), Gaps = 49/363 (13%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYD 164
           +G  LS       +   G+ G  +     +  M+        T  F +     C   + +
Sbjct: 47  KGVGLSEVTCTECIQAFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVE 106

Query: 165 EAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFA 221
           +A+  FD M        DVVA N+L++  C+      RAL+   R+K+     P+  SF 
Sbjct: 107 QAMTLFDDMRETCDCAPDVVAYNTLIAGYCK-AGDGDRALDMFRRLKQEGSCKPNAVSFD 165

Query: 222 ILLEGWEKEGNVEEANKTFGEMV----------------------------ERFEWNPEH 253
            L+    K     +A   F EM+                                    H
Sbjct: 166 TLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAH 225

Query: 254 VLAYETFLITLI-----RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             A + F   ++     R  Q+ E   F+ + + + C  +   ++  +   ++      A
Sbjct: 226 ACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEA 285

Query: 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 368
            QL++  M    + PD  TYN++   L K+K++ E    F E    E     L+  T  +
Sbjct: 286 TQLFESTMTKE-SVPDVFTYNLLIA-LCKSKQLEEALTLFQE---AEQGGVVLDVFT-YS 339

Query: 369 MLLD----ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            L+D    A     A+E++  + + G +P     N L+  L   G++ +     E+M  +
Sbjct: 340 YLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRK 399

Query: 425 RIL 427
            I+
Sbjct: 400 GIM 402



 Score = 42.4 bits (98), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 4/139 (2%)

Query: 116 WNLMVDVLGKNGRFEQ-MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  ++D L K GR E  +  + R++K     +   + ++   +C +G+ D+    F  M 
Sbjct: 478 FGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMI 537

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
                 D +    L+    R+   TS A+E L   V++   P   ++ +L+      G V
Sbjct: 538 ECSCFPDSITYTILVLGFSRR-GHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQV 596

Query: 234 EEANKTFGEMVERFEWNPE 252
           E+A   F EM+ +  +NP+
Sbjct: 597 EDAYTLFKEMIAK-GFNPD 614


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 129/290 (44%), Gaps = 6/290 (2%)

Query: 139 MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M E G + ++ TF  + D  C A +  +A    +VM   G   + +  N ++ A+C+ E 
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCK-EG 59

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +++ A  F+  ++ + V P   ++ +L++G+ KE  +  A +   EM  R    P HV  
Sbjct: 60  RSAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGH-EPNHV-T 117

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           Y TFL  L +  +VD+AL   R M  +     +  ++  +D L +      A  L D  M
Sbjct: 118 YNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLD-EM 176

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
              G  P    YN I   L K  R++E  K F  M  +   P  L     +         
Sbjct: 177 ENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRI 236

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           + A+ +   +   G+ P E   N L+  L   GR+S+  R  +EM++R +
Sbjct: 237 DDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGL 286



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 102/253 (40%), Gaps = 4/253 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +N ++D L K GR  + +  +  M+  GV  ++ T+  + D +C   K   
Sbjct: 39  RGCFPNALVFNGIMDALCKEGRSAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHR 98

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     M+  G E + V  N+ L  +C+          F    +K +  D   +  L++
Sbjct: 99  ALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLID 158

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  + G + EA     EM E     P+    Y   L  L +G +++EA K  + M G   
Sbjct: 159 GLCQAGKLAEAYSLLDEM-ENSGCVPKPG-CYNAILSWLCKGSRINEAHKLFKRMTGSGI 216

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    F   +    + +    A+ L    M   G  P  + YN + + L +  RV E  
Sbjct: 217 LPDWLTFGMMVFGYCRGHRIDDALLLLQ-QMKSAGLAPREVIYNTLIDALNRAGRVSEAY 275

Query: 346 KFFHEMIKNEWQP 358
           +   EMI     P
Sbjct: 276 RLLQEMISRGLSP 288


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 139/319 (43%), Gaps = 5/319 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +N++VD L K        + V+ M E G   ++ TF S+ D +C  G  D+
Sbjct: 208 RGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDD 267

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A     +M   G+  +VV  ++L+  +C+ + +   A E L  +K + V PD  +++ L+
Sbjct: 268 ARKLLGIMVAKGMRPNVVTYSALIDGLCKSQ-KFLEAKEVLEEMKTRGVTPDAFTYSALI 326

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  K   +EEA +    M       P+ V+ Y + +    +  ++ EA K L+ M+ + 
Sbjct: 327 HGLCKADKIEEAEQMLRRMAGS-GCTPD-VVVYSSIIHAFCKSGKLLEAQKTLQEMRKQR 384

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P +  ++  +D L KL     A  + + M       PD +TY+ +   L K+  + E 
Sbjct: 385 KSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEA 444

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
           +K    M K    P  +   T I  L      E A  +   +   G  P   +   L+ G
Sbjct: 445 QKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISG 504

Query: 405 LRNLGRLSDVRRFAEEMLN 423
           L    ++ +  R  EEM N
Sbjct: 505 LCKARKVDEAERVMEEMRN 523



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 139/313 (44%), Gaps = 7/313 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +VD   K G  +     + +M   G+  ++ T++++ D  C + K+ EA    + M 
Sbjct: 252 FNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMK 311

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             GV  D    ++L+  +C+ + +   A + L R+      PD   ++ ++  + K G +
Sbjct: 312 TRGVTPDAFTYSALIHGLCKAD-KIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKL 370

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK-GENCFPTLKFF 292
            EA KT  EM  R +     V+ Y T +  L +  ++ EA   L  M+   +  P +  +
Sbjct: 371 LEAQKTLQEM--RKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTY 428

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           S  ++ L K +    A +L D  M   G  PD +TY  I + L K  R+ E E     M 
Sbjct: 429 STVINGLCKSDMLVEAQKLLD-RMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMK 487

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +    P  +   T I+ L  A + + A  +   +   G  P   + N ++ GL   GR+ 
Sbjct: 488 RAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIK 547

Query: 413 DVRRFAEEMLNRR 425
           + ++  + M + R
Sbjct: 548 EAQQLVQRMKDGR 560



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 117/253 (46%), Gaps = 7/253 (2%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAG 161
           R AG G       ++ ++    K+G+  +    ++ M K+     + T+ ++ D  C  G
Sbjct: 344 RMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLG 403

Query: 162 KYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
           K  EA +  + M   G V  DVV  +++++ +C+ +     A + L+R+ K   +PD  +
Sbjct: 404 KIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSD-MLVEAQKLLDRMCKAGCNPDVVT 462

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  +++G  K G +EEA      M +R    P +V+ Y T +  L + ++VDEA + +  
Sbjct: 463 YTTIIDGLCKCGRLEEAEYLLQGM-KRAGCAP-NVVTYTTLISGLCKARKVDEAERVMEE 520

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG-AFPDSLTYNMIFECLIKN 338
           M+   C P L  ++  ++ L        A QL   M        PD+ TY  I   L+ +
Sbjct: 521 MRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSS 580

Query: 339 KRVHEVEKFFHEM 351
             V E E+   +M
Sbjct: 581 DLVQEAEQLLEQM 593



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 164/374 (43%), Gaps = 33/374 (8%)

Query: 58  EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWN 117
           E+LA    D     +  +G     DL H  L+L        ++  + AG     +P A+ 
Sbjct: 103 ELLASCEPDVCSYNIVISGFCNAGDL-HAALEL--------LEEMKSAG----FAPDAFT 149

Query: 118 L--MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
              ++  +   G  +   + +R M  D   ++ T+ ++  ++  A K +EA+   + M  
Sbjct: 150 HTPIITAMANAGDLDGAMDHLRSMGCDP--NVVTYTALIAAFARAKKLEEAMKLLEEMRE 207

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKEG 231
            G   ++V  N L+ A+C+     S      + VKK+++    P+  +F  L++G+ K G
Sbjct: 208 RGCPPNLVTYNVLVDALCK----LSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRG 263

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           NV++A K  G MV +    P +V+ Y   +  L + ++  EA + L  MK     P    
Sbjct: 264 NVDDARKLLGIMVAK-GMRP-NVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFT 321

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S  +  L K +    A Q+    M   G  PD + Y+ I     K+ ++ E +K   EM
Sbjct: 322 YSALIHGLCKADKIEEAEQMLR-RMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEM 380

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-ILPLEASANELLVGLRNLGR 410
            K    P  +   T I  L    +   A  I   + E+G +LP   + + ++ GL     
Sbjct: 381 RKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCK--- 437

Query: 411 LSDVRRFAEEMLNR 424
            SD+   A+++L+R
Sbjct: 438 -SDMLVEAQKLLDR 450



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 147/373 (39%), Gaps = 50/373 (13%)

Query: 75  TGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQ 131
           +G   TP +V  V+  S      A+ FFRWA     G   + ++WN ++ VL        
Sbjct: 37  SGASTTPRIVGRVVN-SLKDAKLALAFFRWAPASIPGFSHTAFSWNSLLQVL-------- 87

Query: 132 MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
               VR  K                      + EA   F    +   E DV + N ++S 
Sbjct: 88  ----VRCKK----------------------HREAGDLFRSELLASCEPDVCSYNIVISG 121

Query: 192 ICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
            C   +  + ALE L  +K     PD  +   ++      G+++ A      M      +
Sbjct: 122 FCNAGDLHA-ALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM----GCD 176

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P +V+ Y   +    R K+++EA+K L  M+   C P L  ++  +D L KL+    A Q
Sbjct: 177 P-NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLS-MVGAAQ 234

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
                M+  G  P+ +T+N + +   K   V +  K    M+    +P  +  +  I  L
Sbjct: 235 DVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGL 294

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD----VRRFAEEMLNRRI 426
             + +   A E+   +   G+ P   + + L+ GL    ++ +    +RR A       +
Sbjct: 295 CKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDV 354

Query: 427 LIYEVTMHKLKKA 439
           ++Y   +H   K+
Sbjct: 355 VVYSSIIHAFCKS 367


>gi|147793827|emb|CAN62355.1| hypothetical protein VITISV_022418 [Vitis vinifera]
          Length = 546

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 170/401 (42%), Gaps = 50/401 (12%)

Query: 63  ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA-----WN 117
           +S  +IE AL    +  T DLV +VL+        A  FF WA R    S Y+      N
Sbjct: 100 SSVSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGXESGYSPGCGVHN 159

Query: 118 LMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
            ++D+LG+  RF +M      M K  G+ +  TF  + + Y  A K +EAV  F      
Sbjct: 160 EILDILGRMRRFHEMTQLFDEMSKRKGLXNERTFGVLLNRYAAAHKTEEAVKIFYKRKGL 219

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
           G E D++A  +LL ++CR ++      EFL   KK    PD  S  ++L GW   G++ E
Sbjct: 220 GFELDLIAFQTLLMSLCRYKH--VEMAEFLFHSKKNEFPPDIKSMNVILNGWCVLGSLRE 277

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A + + +++   +  P+    Y  F+ +L +  ++  A+K  + M  + C P +   +  
Sbjct: 278 AKRFWNDIITS-KCKPDK-FTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCI 335

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           +D L        A+++   M       PD  TYN + + L K +R  +V +   +M +  
Sbjct: 336 IDALCFKKRIPEALEVLREMNE-RDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKG 394

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEI-------------------------WNYILE-- 388
             P   N  T   +L    +PE    I                         W Y L+  
Sbjct: 395 CLP---NARTYGYLLKSTKKPEEVPGILERMERNGCRMNSDCYNLILKLYMDWGYELKLR 451

Query: 389 --------NGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
                   NG+ P + +   ++ GL + GR+ D   + ++M
Sbjct: 452 STLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDALSYFKQM 492


>gi|356499705|ref|XP_003518677.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Glycine max]
          Length = 500

 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 100/457 (21%), Positives = 188/457 (41%), Gaps = 65/457 (14%)

Query: 39  RFPTHLDAPYISSSARIICEILAHASSDDIE----------------SALACTGIIPTPD 82
           RF     + YI  S  I   +L+   +DD++                 +L  +G+  + D
Sbjct: 5   RFSFQSPSNYIPPSTLIRHRLLSSNQNDDVQKVFGILSSTSTPEQLKQSLKSSGVFLSND 64

Query: 83  LVHEVLQ---LSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAV- 136
           ++ +VL+    S+ +PS  ++FFR+ GR  G   S ++ + M+ +LG++  F Q+W  + 
Sbjct: 65  VIDQVLKRVRFSHGNPSQTLEFFRYTGRRKGFYHSSFSLDTMLYILGRSRMFGQVWELLI 124

Query: 137 -RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
               K+   ++  T   +           + V SF        E D    N+LL  +C Q
Sbjct: 125 EARRKDQTAITARTVMVVLGRIAKVCSVRQTVESFRKFRKLVQEFDTNCFNALLRTLC-Q 183

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE--------------------------- 228
           E   + A    + +K    P+  +F ILL GW+                           
Sbjct: 184 EKSMADARNVYHSLKHRFRPNLQTFNILLSGWKTPEDADLFFKEMKEMGVTPDVVTYNSL 243

Query: 229 -----KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
                K   +E+A K   EM ++ +++P+ V+ Y   +  L    Q D+A   L+ MK  
Sbjct: 244 MDVYCKGREIEKAYKMLDEMRDQ-DFSPD-VITYTCIIGGLGLIGQPDKARNVLKEMKEY 301

Query: 284 NCFPTLKFFSNALD---ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
            C+P    ++ A+    I  +L D+   V+     MV  G  P++ TYN+ F     +  
Sbjct: 302 GCYPDAAAYNAAIRNFCIAKRLGDAHGLVE----EMVTKGLSPNATTYNLFFRVFYWSND 357

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           +      +  M+     P   +C   I +    ++ E+A++ W  ++E G       ++ 
Sbjct: 358 LQSSWNMYQRMMVEGCLPNTQSCMFLIRLFRRHEKVEMALQFWGDMVEKGFGSYTLVSDV 417

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437
           L   L ++G+L +  +   EM+ +      V+  ++K
Sbjct: 418 LFDLLCDMGKLEEAEKCFLEMVEKGQKPSHVSFRRIK 454


>gi|11120809|gb|AAG30989.1|AC012396_25 hypothetical protein [Arabidopsis thaliana]
          Length = 466

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 103/449 (22%), Positives = 181/449 (40%), Gaps = 71/449 (15%)

Query: 66  DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVL 123
           DD+E AL  + +  T  +V ++LQ       +A  FF WAG  +  S  P A+N M+D+L
Sbjct: 8   DDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDIL 67

Query: 124 G----KNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
                KN +F  + + +  MK +   V+ +     I   YC   +Y   V  F       
Sbjct: 68  SSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYC--ERYLTHVQKFAKRKRIR 125

Query: 178 VEQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           V+   ++ A N LL A+C+           L R++  V PD ++F +L  GW +  + ++
Sbjct: 126 VKTQPEINAFNMLLDALCKC-GLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRVRDPKK 184

Query: 236 ANKTFGEMVERFEWNPE---HVLAYETF-------------------------------- 260
           A K   EM+E     PE   +  A +TF                                
Sbjct: 185 AMKLLEEMIEAGH-KPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFA 243

Query: 261 --LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
             ++ L +  + +E  + +  M    C P +  + + ++ +        A +  D  M  
Sbjct: 244 LMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLD-EMSN 302

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            G  PD +TYN     L +N++  E  K +  M+++   P+       I+M  + D+P+ 
Sbjct: 303 KGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDG 362

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI-LIYEV------ 431
           A   W  + +   +    +   ++ GL +  R  +     EE++N+ + L Y V      
Sbjct: 363 AFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSFLM 422

Query: 432 ---------TMHKLK---KAFYNESRSMR 448
                     +HK+    K FYN S + R
Sbjct: 423 RLSEVGNLKAIHKVSEHMKKFYNHSMARR 451


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 157/339 (46%), Gaps = 12/339 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGK--Y 163
           RG R   Y +N++V+ + K G  ++ +  + R+ K   V  + T+  +       GK  Y
Sbjct: 245 RGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEY 304

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
            E +MS   M + G E + +  ++L++A+CR + +   A   L  +K K + PDG S+  
Sbjct: 305 GEKLMS--DMLVKGCEPNPITYSTLITALCR-DGKIDEAKNVLKVMKEKALAPDGYSYDP 361

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+    +EG V+ A +   +M+      P+ +L+Y + L +L +    DEAL     +  
Sbjct: 362 LISALCREGKVDLAIEFLDDMISGGHL-PD-ILSYNSILASLCKNGNADEALNIFEKLGE 419

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
             C P    ++     L    D   A+ +  + M+ +G  PD +TYN +  CL ++  V 
Sbjct: 420 VGCPPNAGSYNTLFGALWSSGDKIRALGMI-LEMLSNGIDPDEITYNSLISCLCRDGLVD 478

Query: 343 EVEKFFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
           +  +   +M ++E  QPT ++  T +  L        AIE+   ++  G LP E +   L
Sbjct: 479 QAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLL 538

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           + G+   G   D    A  ++N    I E +  + +K F
Sbjct: 539 IQGIGFAGWRYDAMELANLLVNMDA-ISEDSFKRFQKIF 576



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 127/295 (43%), Gaps = 5/295 (1%)

Query: 128 RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           + E+    + ++++ G   +  + ++   +C A + D A    D M   G E DVV  N 
Sbjct: 127 KIEKAIQVMEILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNI 186

Query: 188 LLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           L+   C +  +   AL  +++ +K    P   ++ IL+E    +G ++EA K   EM+ R
Sbjct: 187 LIGNFCGR-GRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSR 245

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P+    Y   +  + +   +D A +FL  +    C   +  ++  L  L+      
Sbjct: 246 -GLRPDRY-TYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWE 303

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
           +  +L   M+V  G  P+ +TY+ +   L ++ ++ E +     M +    P   +    
Sbjct: 304 YGEKLMSDMLV-KGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPL 362

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           I+ L    + ++AIE  + ++  G LP   S N +L  L   G   +     E++
Sbjct: 363 ISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKL 417



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 129/309 (41%), Gaps = 39/309 (12%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F    +  C + KYDE++     M   G + DV+    L+      + +  +A++ +  +
Sbjct: 80  FMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMK-KIEKAIQVMEIL 138

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           +K   PD  ++  ++ G+ K   V+ A+K    M +R  + P+ V+ Y   +       +
Sbjct: 139 EKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKR-GFEPD-VVTYNILIGNFCGRGR 196

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           +D AL+ +  +  +NC PT+  ++  ++  +       A++L D M+   G  PD  TYN
Sbjct: 197 LDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLS-RGLRPDRYTYN 255

Query: 330 MI-------------FECL---IKNKRVHEV-------------------EKFFHEMIKN 354
           ++             FE L    KN  V  V                   EK   +M+  
Sbjct: 256 VVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVK 315

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
             +P P+  +T IT L    + + A  +   + E  + P   S + L+  L   G++   
Sbjct: 316 GCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLA 375

Query: 415 RRFAEEMLN 423
             F ++M++
Sbjct: 376 IEFLDDMIS 384



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 5/170 (2%)

Query: 260 FLITLIRG---KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           F+ TL R     + DE+L FL+ M      P +   +  +     +     A+Q+ +I+ 
Sbjct: 80  FMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILE 139

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
             HG  PD   YN +     K  RV    K    M K  ++P  +     I         
Sbjct: 140 K-HGK-PDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRL 197

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           ++A+ + + +L++   P   +   L+      G + +  +  +EML+R +
Sbjct: 198 DLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGL 247



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 96/221 (43%), Gaps = 12/221 (5%)

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGEN 284
           K    +E+      MV R  + P+ +L  +     LI+G    K++++A++ + +++ ++
Sbjct: 89  KSAKYDESLYFLQHMVNR-GYKPDVILCTK-----LIKGFFNMKKIEKAIQVMEILE-KH 141

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P +  ++  +    K +   HA ++ D  M   G  PD +TYN++        R+   
Sbjct: 142 GKPDVFAYNAVISGFCKADRVDHASKVLD-RMKKRGFEPDVVTYNILIGNFCGRGRLDLA 200

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            +   +++K+  +PT +     I   +     + A+++ + +L  G+ P   + N ++ G
Sbjct: 201 LRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNG 260

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           +   G L     F   +     +    T + L +   NE +
Sbjct: 261 MCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGK 301


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 141/318 (44%), Gaps = 3/318 (0%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   +G   S  A+N ++  LG+ G+ E+       M++D   +L T+  + D  C AG+
Sbjct: 368 RQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPNLTTYNILIDMLCKAGE 427

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A+   D M   G+  +++ VN ++  +C+ +        FL    K+  PD  +F  
Sbjct: 428 LEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCS 487

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  + G V++A   + +M++  +    +V+ Y + +    +  + ++  K  + M  
Sbjct: 488 LIDGLGRRGRVDDAYSLYEKMLDSDQI--PNVVVYTSLIQNFFKCGRKEDGHKIYKEMVH 545

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
             C P L   ++ +D + K  +      L++ +    G  PD  +Y+++   L+K     
Sbjct: 546 RGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKA-QGLVPDVRSYSILIHGLVKAGFSR 604

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E  K F+EM +       L   T I     + + + A ++   +   G+ P   +   ++
Sbjct: 605 ETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVV 664

Query: 403 VGLRNLGRLSDVRRFAEE 420
            GL  + RL +     EE
Sbjct: 665 DGLAKIDRLDEAYMLFEE 682



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 143/333 (42%), Gaps = 39/333 (11%)

Query: 119 MVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D LG+ GR +  ++   +++  D + ++  + S+  ++   G+ ++    +  M   G
Sbjct: 488 LIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRG 547

Query: 178 VEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
              D++ +NS +  + +  E +  RAL    + + +V PD  S++IL+ G  K G   E 
Sbjct: 548 CSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLV-PDVRSYSILIHGLVKAGFSRET 606

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            K F EM E  +     VLAY T +    +  +VD+A + L  MK +   PT+  + + +
Sbjct: 607 YKLFYEMKE--QGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVV 664

Query: 297 DILVKLNDSTHAVQLW--------DIMMVFH--------------------------GAF 322
           D L K++    A  L+        D+ +V +                          G  
Sbjct: 665 DGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLT 724

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           P+S T+N + + L+K + + E +  F  M   +  P  +  +  I  L    +   A   
Sbjct: 725 PNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVF 784

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVR 415
           W  + + G+ P   +   ++ GL   G + + R
Sbjct: 785 WQEMQKQGLKPNNITYTTMIAGLAKAGNVMEAR 817



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 112/252 (44%), Gaps = 20/252 (7%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
           + Q L P   ++++++  L K G   + +     MKE G+ L +  + ++ D +C +GK 
Sbjct: 579 KAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKV 638

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
           D+A    + M   G++  VV   S++  + + + +   A       K I VD +   ++ 
Sbjct: 639 DKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKID-RLDEAYMLFEEAKSIGVDLNVVIYSS 697

Query: 223 LLEGWEKEGNVEEANKTFGEMVER------FEWNPEHVLAYETFLITLIRGKQVDEALKF 276
           L++G+ K G ++EA     E++++      + WN          L  L++ +++DEA   
Sbjct: 698 LIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWN--------CLLDALVKAEEIDEAQVC 749

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
            + MK   C P    +S  ++ L  +     A   W  M    G  P+++TY  +   L 
Sbjct: 750 FQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQK-QGLKPNNITYTTMIAGLA 808

Query: 337 KNKRVHEVEKFF 348
           K   V E    F
Sbjct: 809 KAGNVMEARGLF 820



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 127/298 (42%), Gaps = 5/298 (1%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+H +++  +   +  + F+    +G  L   A+N ++D   K+G+ ++ +  +  MK  
Sbjct: 593 LIHGLVKAGFSRETYKL-FYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTK 651

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           G+  ++ T+ S+ D      + DEA M F+     GV+ +VV  +SL+    +       
Sbjct: 652 GLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEA 711

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
            L     ++K + P+  ++  LL+   K   ++EA   F  M +  + +P + + Y   +
Sbjct: 712 YLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNM-KNLKCSP-NAMTYSIMI 769

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             L   ++ ++A  F + M+ +   P    ++  +  L K  +   A  L+D      G 
Sbjct: 770 NGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKA-SGG 828

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
            PDS  YN + E L    +  +    F E      +     C   +  L  AD  E A
Sbjct: 829 VPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALHKADCLEQA 886



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 133/333 (39%), Gaps = 7/333 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+  ++  L    R + M      M+E G   ++  F ++   +   G+ D A+   D M
Sbjct: 205 AYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEM 264

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
             +    D+V  N  +    +   +   A +F + +K + + PD  ++  L+    K   
Sbjct: 265 KSNSFTADLVLYNVCIDCFGKV-GKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARR 323

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA + F E+      +   V AY T ++      + DEA   L   K + C P++  +
Sbjct: 324 LDEAVELFEEL--DLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAY 381

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  L  L +      A+++ D M     A P+  TYN++ + L K   +    K    M 
Sbjct: 382 NCILTCLGRKGKVEEALRIHDEMR--QDAAPNLTTYNILIDMLCKAGELEAALKVQDTMK 439

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +    P  +     I  L  A + + A  I+  +      P   +   L+ GL   GR+ 
Sbjct: 440 EAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVD 499

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           D     E+ML+   +   V    L + F+   R
Sbjct: 500 DAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGR 532



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 7/199 (3%)

Query: 223 LLEGWEKEGNVEEANKTFG--EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           L+  + K   ++EA   FG  EM+ +F++ P    AY T +  L    + D  L     M
Sbjct: 174 LVASFVKSHKLKEA---FGVIEMMRKFKFRPAFS-AYTTLIGALSAANRPDPMLTLFHQM 229

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
           +       +  F+  + +  +      A+ L D M   +    D + YN+  +C  K  +
Sbjct: 230 QEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKS-NSFTADLVLYNVCIDCFGKVGK 288

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           V    KFFHEM      P  +   T I +L  A   + A+E++  +  N  +P   + N 
Sbjct: 289 VDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNT 348

Query: 401 LLVGLRNLGRLSDVRRFAE 419
           +++G  + G+  +     E
Sbjct: 349 MIMGYGSAGKFDEAYSLLE 367


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 138/319 (43%), Gaps = 5/319 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +N++VD L K        + V+ M E G   ++ TF S+ D +C  G  D+
Sbjct: 86  RGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDD 145

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A     +M   G+  +VV  ++L+  +C+ + +   A E L  +K   V PD  +++ L+
Sbjct: 146 ARKLLGIMVAKGMRPNVVTYSALIDGLCKSQ-KFLEAKEVLEEMKASGVTPDAFTYSALI 204

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  K   +EEA +    M       P+ V+ Y + +    +  ++ EA K L+ M+ + 
Sbjct: 205 HGLCKADKIEEAEQMLRRMAGSG-CTPD-VVVYSSIIHAFCKSGKLLEAQKTLQEMRKQR 262

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P +  ++  +D L KL     A  + D M       PD +TY+ +   L K+  + E 
Sbjct: 263 KSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEA 322

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
           +K    M K    P  +   T I  L      E A  +   +   G  P   +   L+ G
Sbjct: 323 QKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISG 382

Query: 405 LRNLGRLSDVRRFAEEMLN 423
           L    ++ +  R  EEM N
Sbjct: 383 LCKARKVDEAERVMEEMRN 401



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 117/253 (46%), Gaps = 7/253 (2%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAG 161
           R AG G       ++ ++    K+G+  +    ++ M K+     + T+ ++ D  C  G
Sbjct: 222 RMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLG 281

Query: 162 KYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
           K  EA +  D M   G V  DVV  +++++ +C+  +    A + L+R+ K   +PD  +
Sbjct: 282 KIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKS-DMLVEAQKLLDRMCKAGCNPDVVT 340

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  +++G  K G +EEA      M +R    P +V+ Y T +  L + ++VDEA + +  
Sbjct: 341 YTTIIDGLCKCGRLEEAEYLLQGM-KRAGCAP-NVVTYTTLISGLCKARKVDEAERVMEE 398

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG-AFPDSLTYNMIFECLIKN 338
           M+   C P L  ++  ++ L        A QL   M        PD+ TY  I   L+ +
Sbjct: 399 MRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSS 458

Query: 339 KRVHEVEKFFHEM 351
             V E E+   +M
Sbjct: 459 DLVQEAEQLLEQM 471



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 142/311 (45%), Gaps = 18/311 (5%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
           ++  +   G  +   + +R M  D   ++ T+ ++  ++  A K +EA+   + M   G 
Sbjct: 31  IITAMANAGDLDGAMDHLRSMGCDP--NVVTYTALIAAFARAKKLEEAMKLLEEMRERGC 88

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKEGNVE 234
             ++V  N L+ A+C+     S      + VKK+++    P+  +F  L++G+ K GNV+
Sbjct: 89  PPNLVTYNVLVDALCK----LSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVD 144

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A K  G MV +    P +V+ Y   +  L + ++  EA + L  MK     P    +S 
Sbjct: 145 DARKLLGIMVAK-GMRP-NVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSA 202

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +  L K +    A Q+    M   G  PD + Y+ I     K+ ++ E +K   EM K 
Sbjct: 203 LIHGLCKADKIEEAEQMLR-RMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQ 261

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-ILPLEASANELLVGLRNLGRLSD 413
              P  +   T I  L    +   A  I + + E+G +LP   + + ++ GL      SD
Sbjct: 262 RKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCK----SD 317

Query: 414 VRRFAEEMLNR 424
           +   A+++L+R
Sbjct: 318 MLVEAQKLLDR 328



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 11/243 (4%)

Query: 202 ALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           ALE L  +K     PD  +   ++      G+++ A      M      +P +V+ Y   
Sbjct: 9   ALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM----GCDP-NVVTYTAL 63

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +    R K+++EA+K L  M+   C P L  ++  +D L KL+    A Q     M+  G
Sbjct: 64  IAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLS-MVGAAQDVVKKMIEGG 122

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             P+ +T+N + +   K   V +  K    M+    +P  +  +  I  L  + +   A 
Sbjct: 123 FAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAK 182

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSD----VRRFAEEMLNRRILIYEVTMHKL 436
           E+   +  +G+ P   + + L+ GL    ++ +    +RR A       +++Y   +H  
Sbjct: 183 EVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAF 242

Query: 437 KKA 439
            K+
Sbjct: 243 CKS 245


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 160/352 (45%), Gaps = 16/352 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y++ +++    +  RF      +  M + G   S+ T  S+ + +C   ++ EAV   D 
Sbjct: 651 YSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDS 710

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M+  G+E +VV  N++++ +C+  +  +    F    KK +  D  ++  L+ G    G 
Sbjct: 711 MAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGR 770

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             +A +   +MV+R + +P +V+ +   + T ++   + EA    + M   +  P +  +
Sbjct: 771 WTDAARLLRDMVKR-KIDP-NVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTY 828

Query: 293 S---NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
           +   N   I  +L D+ H   L    MV  G FPD +TYN +     K+KRV +  K F 
Sbjct: 829 NSLINGFCIQGRLGDAKHMFDL----MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFC 884

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM             T I     A +  +A +++N +++ G+ P   + N LL  L N G
Sbjct: 885 EMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNG 944

Query: 410 RLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 457
           ++       E++    ++  I+ Y + +  + +   ++ +    +F SL R+
Sbjct: 945 KIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRN--DKVKEAWCLFRSLTRK 994



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 146/335 (43%), Gaps = 15/335 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y++ +++    +  R     + + ++MK     S+ TF S+   +C   +  +A      
Sbjct: 101 YSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVAS 160

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKE 230
           M   G E +VV  N+L+  +C+     + ALE LN ++K   +  D  ++  LL G    
Sbjct: 161 MVKSGYEPNVVVYNTLIDCLCKN-GDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYS 219

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G   +A +   +M +R   NP+ V  +   +   ++   +DEA +  + M   +  P   
Sbjct: 220 GEWRQAARILRDMTKR-RINPD-VFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTV 277

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +++ ++ L       HA + +D +M   G FP+ +TYN +     K++RV +  K F  
Sbjct: 278 TYNSLINGLCMHGRLYHAKKTFD-LMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQR 336

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M +           T I       +  +A +I+++++  G+ P   +   LL GL   G 
Sbjct: 337 MYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGE 396

Query: 411 LSDV------RRFAEEMLNRRILIYEVTMHKLKKA 439
           +          R  E+ L   I+ Y + +H L KA
Sbjct: 397 IGSAMVKFNDMRSGEKYLG--IVAYNIMIHGLCKA 429



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 114/288 (39%), Gaps = 39/288 (13%)

Query: 116  WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            +  ++D   K G   +  N  + M    V  ++ T+ S+ + +C  G+  +A   FD+M 
Sbjct: 793  FTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMV 852

Query: 175  MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
              G   DVV  N+L++  C+ +        F     + +  D  ++  L+ G+ + G + 
Sbjct: 853  SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLN 912

Query: 235  EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
             A K F  MV+     P  ++ Y   L  L    ++++AL  +  ++            N
Sbjct: 913  VAQKVFNRMVD--CGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQ-----------KN 959

Query: 295  ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
             +D+                         D +TYN+I + + +N +V E    F  + + 
Sbjct: 960  QMDV-------------------------DIITYNIIIQGMCRNDKVKEAWCLFRSLTRK 994

Query: 355  EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
              +   +   T I+ L        A ++   + E+G +P E   +E L
Sbjct: 995  GVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERIYDETL 1042



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 125/311 (40%), Gaps = 10/311 (3%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     +Y+  +     M + G+  D+ +   L+   CR  ++ S AL  
Sbjct: 64  SVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCFCRC-SRLSLALSI 122

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  DP   +F  LL G+     + +A      MV+   + P +V+ Y T +  L
Sbjct: 123 LGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKS-GYEP-NVVVYNTLIDCL 180

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--MVFHGAF 322
            +   V+ AL+ L  M+ +          N L  L  L  S    Q   I+  M      
Sbjct: 181 CKNGDVNIALELLNEMEKKGRLAADLVTYNTL--LTGLCYSGEWRQAARILRDMTKRRIN 238

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           PD  T+  + +  +K   + E ++ + +M+++   P  +   + I  L        A + 
Sbjct: 239 PDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKT 298

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF-- 440
           ++ +   G  P   + N L+ G     R+ D  +  + M    ++    T + L   +  
Sbjct: 299 FDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQ 358

Query: 441 YNESRSMRDIF 451
             + R  +DIF
Sbjct: 359 VGKLRVAKDIF 369



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 109/247 (44%), Gaps = 8/247 (3%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +R++P  + +  ++D   K G  ++     + M +  +  +  T+ S+ +  C  G+   
Sbjct: 235 RRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYH 294

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A  +FD+M+  G   +VV  N+L++  C+          F    ++ +  D  ++  L+ 
Sbjct: 295 AKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIH 354

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL-KFLRVMKGEN 284
           G+ + G +  A   F  MV      P+ ++ +   L  L    ++  A+ KF  +  GE 
Sbjct: 355 GYCQVGKLRVAKDIFSWMVS-CGVTPD-IITHCILLHGLCVNGEIGSAMVKFNDMRSGEK 412

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
            +  +  ++  +  L K +    A +L+  + V  G  PD+ TY ++   L KN    E 
Sbjct: 413 -YLGIVAYNIMIHGLCKADKVEEAWELFCRLPV-EGVKPDARTYTIMILGLCKNGPRREA 470

Query: 345 EKFFHEM 351
           ++ F  M
Sbjct: 471 DELFRRM 477



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 56/285 (19%), Positives = 118/285 (41%), Gaps = 5/285 (1%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           K+D+A   F  M        +V    +L+AI +  N+    +   ++++ + +  D  SF
Sbjct: 595 KFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKM-NKFDIVIYLFHKMENLGISHDLYSF 653

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            IL+  + +      A    G+M+ +  + P  ++   + L    +G +  EA+  +  M
Sbjct: 654 TILIHCFCRCSRFSLALALLGKMM-KLGFQPS-IVTLGSLLNGFCQGNRFQEAVSLVDSM 711

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                 P +  ++  ++ L K  D  +A++++   M   G   D++TYN +   L  + R
Sbjct: 712 AELGLEPNVVIYNTVINGLCKNRDLNNALEIF-YGMEKKGIVADAVTYNTLISGLCNSGR 770

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
             +  +   +M+K +  P  +     I   +       A  ++  ++   + P   + N 
Sbjct: 771 WTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNS 830

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           L+ G    GRL D +   + M+++      VT + L   F    R
Sbjct: 831 LINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKR 875



 Score = 42.0 bits (97), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 26/134 (19%), Positives = 59/134 (44%), Gaps = 1/134 (0%)

Query: 113  PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFD 171
             + +N ++    + G+          M + GV   + T+  + D  C  GK ++A++  +
Sbjct: 895  AFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVE 954

Query: 172  VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
             +  + ++ D++  N ++  +CR +        F +  +K V  D  ++  ++ G  + G
Sbjct: 955  DLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNG 1014

Query: 232  NVEEANKTFGEMVE 245
               EA+K    M E
Sbjct: 1015 LRREADKLCTRMKE 1028


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 159/393 (40%), Gaps = 55/393 (13%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           RG    P A  +N +V    + G  ++    V +M+E G+  +L TF S+ +  C AG+ 
Sbjct: 184 RGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRM 243

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           ++A   FD M   G+  D V+ N+L+   C+          F    +K + PD  +F  L
Sbjct: 244 EDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSL 303

Query: 224 LEGWEKEGNVEEANKTFGEMVER-FEWN-------------------------------- 250
           +    K GN+E A     EM ER  + N                                
Sbjct: 304 IHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRI 363

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
              V+ Y   +       ++DEA + +R M+ +   P +  +S  L    K  D+  A Q
Sbjct: 364 QPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQ 423

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           L +  M+ +G  PD++TY+ +   L + KR+ +    F  MI    QP  +   + I   
Sbjct: 424 L-NQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGH 482

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
                 E A+ + + +++ G+LP   + + L+ GL    R  + +R              
Sbjct: 483 CKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRL------------- 529

Query: 431 VTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 463
                L K ++ E       +D+L R C+ +++
Sbjct: 530 -----LFKLYHEEPVPANIKYDALMRCCRNAEL 557



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 159/369 (43%), Gaps = 11/369 (2%)

Query: 87  VLQLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV- 144
           +L LS  S  SA  FF      G   + Y +N++V  L   G  ++  + +R M+  G  
Sbjct: 130 LLALSDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCD 189

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
            +  T+ ++  ++C AG+ D A    D+M   G++ ++V  NS+++ IC+          
Sbjct: 190 PNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKV 249

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           F   VK+ + PDG S+  L+ G+ K G   EA   F EM  R    P+ V+ + + +  +
Sbjct: 250 FDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMT-RKGIMPD-VVTFTSLIHVM 307

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK---LNDSTHAVQLWDIMMVFHGA 321
            +   ++ A+  +R M+          F+  +D   K   L+D+  AV+      +    
Sbjct: 308 CKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRI---- 363

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            P  + YN +        R+ E  +   EM     +P  +  +T ++      +   A +
Sbjct: 364 QPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQ 423

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
           +   +LENG+LP   + + L+  L    RL D     + M++  +   EVT   L     
Sbjct: 424 LNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHC 483

Query: 442 NESRSMRDI 450
            E    R +
Sbjct: 484 KEGNVERAL 492


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 169/372 (45%), Gaps = 44/372 (11%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           +L+P    +N+++  LGK G+  +  +    MKE G   +  TF ++ D  C     D A
Sbjct: 572 KLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLA 631

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +  F  M++     DV+  N+++  + + E +   A  F +++KK + PD  +   LL G
Sbjct: 632 LKMFCRMTIMNCSPDVLTYNTIIYGLIK-EGRAGYAFWFYHQMKKFLSPDHVTLYTLLPG 690

Query: 227 WEKEGNVEEA----------------NKTFGEMVE--RFEWNPEHVLAY----------- 257
             K+G VE+A                N+ +GE++E    E   E  +++           
Sbjct: 691 VVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFAEGLVCNSICQ 750

Query: 258 -ETFLITLIR-----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            +  ++ LIR      K +D    F +  K     PT + ++  +D L+  N +  A++L
Sbjct: 751 DDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKL 810

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
           + + M   G  P+  TYN++ +   K+KR+ E+ + ++EM+    +P  +     I+ L+
Sbjct: 811 F-VEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALV 869

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----IL 427
            ++    A++++  I+     P   +   L+ GL   GR  +  +  EEM + +      
Sbjct: 870 KSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCA 929

Query: 428 IYEVTMHKLKKA 439
           IY + ++   KA
Sbjct: 930 IYNILINGFGKA 941



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 146/344 (42%), Gaps = 47/344 (13%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R + Y + + + VLG+ GR +  +  ++ M+++G    + T+  + D+ C AGK D+A
Sbjct: 257 GLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKA 316

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-----SFA 221
              +  M     + D+V   +L+S      +     LE + R    ++ DG      ++ 
Sbjct: 317 KELYTKMRASSHKPDLVTYITLMSKFGNYGD-----LETVKRFWSEMEADGYAPDVVTYT 371

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           IL+E   K G V++A      M  R      ++  Y T +  L+  +++DEAL+    M+
Sbjct: 372 ILVEALCKSGKVDQAFDMLDVM--RVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNME 429

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM------------------------- 316
                PT   +   +D   KL D   A+  ++ M                          
Sbjct: 430 SLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIR 489

Query: 317 ----VFH-----GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
               +F+     G  PDS+TYNM+ +C  K  ++ +  K   EM+    +P  +   + I
Sbjct: 490 EAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLI 549

Query: 368 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
             L  A   + A +++  + +  + P   + N L+ GL   G+L
Sbjct: 550 DTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKL 593



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 155/382 (40%), Gaps = 44/382 (11%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQMWNAVRV 138
           PD+V   + +     +  +D  +      R S +  +L+  + ++ K G +  +    R 
Sbjct: 295 PDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRF 354

Query: 139 ---MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
              M+ DG    + T+  + ++ C +GK D+A    DVM + G+  ++   N+L+S +  
Sbjct: 355 WSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLN 414

Query: 195 QENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER------- 246
              +   ALE  N ++ + V P   S+ + ++ + K G+ E+A  TF +M +R       
Sbjct: 415 LR-RLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIA 473

Query: 247 ---------------------------FEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
                                         +P+ V  Y   +    +  Q+D+A K L  
Sbjct: 474 ACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSV-TYNMMMKCYSKAGQIDKATKLLTE 532

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M  E C P +   ++ +D L K      A Q++  +     A P  +TYN++   L K  
Sbjct: 533 MLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLA-PTVVTYNILITGLGKEG 591

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           ++ +    F  M ++   P  +     +  L   D  ++A++++  +      P   + N
Sbjct: 592 KLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYN 651

Query: 400 ELLVGLRNLGRLSDVRRFAEEM 421
            ++ GL   GR      F  +M
Sbjct: 652 TIIYGLIKEGRAGYAFWFYHQM 673



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 2/198 (1%)

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K+    +A K F +  +    +P    +Y   +  L+     + ALK    MK   C P 
Sbjct: 764 KQKKALDAKKLFDKFTKSLGTHPTPE-SYNCLMDGLLGCNITEAALKLFVEMKNAGCCPN 822

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  ++  LD   K        +L++ M+   G  P+ +T+N+I   L+K+  +++    +
Sbjct: 823 IFTYNLLLDAHGKSKRIDELFELYNEMLC-RGCKPNIITHNIIISALVKSNSINKALDLY 881

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
           +E+I  ++ PTP      I  LL A   E A++I+  + +    P  A  N L+ G    
Sbjct: 882 YEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKA 941

Query: 409 GRLSDVRRFAEEMLNRRI 426
           G ++      + M+   I
Sbjct: 942 GNVNIACDLFKRMIKEGI 959



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/316 (20%), Positives = 124/316 (39%), Gaps = 41/316 (12%)

Query: 108  GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
            G   +P ++N ++D L      E        MK  G   ++ T+  + D++  + + DE 
Sbjct: 783  GTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDEL 842

Query: 167  VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLE 225
               ++ M   G + +++  N ++SA+ +  N  ++AL+ +   +     P   ++  L+ 
Sbjct: 843  FELYNEMLCRGCKPNIITHNIIISALVKS-NSINKALDLYYEIISGDFSPTPCTYGPLIG 901

Query: 226  GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            G  K G  EEA K        FE  P++                               C
Sbjct: 902  GLLKAGRSEEAMKI-------FEEMPDY------------------------------QC 924

Query: 286  FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
             P    ++  ++   K  +   A  L+   M+  G  PD  +Y ++ ECL    RV +  
Sbjct: 925  KPNCAIYNILINGFGKAGNVNIACDLFK-RMIKEGIRPDLKSYTILVECLFMTGRVDDAV 983

Query: 346  KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             +F E+      P  ++    I  L  +   E A+ +++ +   GI P   + N L++  
Sbjct: 984  HYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHF 1043

Query: 406  RNLGRLSDVRRFAEEM 421
             N G +    +  EE+
Sbjct: 1044 GNAGMVDQAGKMFEEL 1059



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/180 (20%), Positives = 82/180 (45%), Gaps = 5/180 (2%)

Query: 116  WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            +N++++  GK G      +  + M ++G+   L ++  + +     G+ D+AV  F+ + 
Sbjct: 931  YNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELK 990

Query: 175  MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
            + G++ D V+ N +++ + +   +   AL   + +K + + P+  ++  L+  +   G V
Sbjct: 991  LTGLDPDTVSYNLMINGLGKSR-RLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMV 1049

Query: 234  EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            ++A K F E+  +F     +V  Y   +    +    D A    + M    C P    F+
Sbjct: 1050 DQAGKMFEEL--QFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFA 1107



 Score = 45.1 bits (105), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 96/231 (41%), Gaps = 4/231 (1%)

Query: 197  NQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
            N T  AL+    +K     P+  ++ +LL+   K   ++E  + + EM+ R      +++
Sbjct: 802  NITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCR--GCKPNII 859

Query: 256  AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
             +   +  L++   +++AL     +   +  PT   +   +  L+K   S  A+++++ M
Sbjct: 860  THNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEM 919

Query: 316  MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
              +    P+   YN++     K   V+     F  MIK   +P   +    +  L     
Sbjct: 920  PDYQ-CKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGR 978

Query: 376  PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
             + A+  +  +   G+ P   S N ++ GL    RL +      EM NR I
Sbjct: 979  VDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGI 1029



 Score = 45.1 bits (105), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 3/111 (2%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++NLM++ LGK+ R E+  +    MK  G+   L T+ ++   +  AG  D+A   F+ +
Sbjct: 1000 SYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEEL 1059

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAIL 223
               G+E +V   N+L+    +  N+  RA     ++  +   P+  +FA L
Sbjct: 1060 QFMGLEPNVFTYNALIRGHSKSGNK-DRAFSVFKKMMIVGCSPNAGTFAQL 1109


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 148/328 (45%), Gaps = 24/328 (7%)

Query: 130 EQMWNAVRVMKEDGVL-------------SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           E + N +R MK D  L             S+  F+ +  +     KYD  +  ++ M M 
Sbjct: 51  EMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQML 110

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-DPDGDSFAILLEGWEKEGNVEE 235
           G+  ++   N LL+  CR  +Q S AL FL ++ K+  +P   +F  LL G+ +   V +
Sbjct: 111 GIPHNLCTCNILLNCFCRC-SQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYD 169

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A   F +MV    + P +V+ Y T +  L + KQVD AL  L  M+ +   P +  +++ 
Sbjct: 170 ALYMFDQMVG-MGYKP-NVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSL 227

Query: 296 LDILV---KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  L    + +D+T  V      M     +PD  T+N + +  +K  RV E E+F+ EMI
Sbjct: 228 ISGLCSSGRWSDATRMVSC----MTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMI 283

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +    P  +  +  I  L      + A E++ +++  G  P   + + L+ G     ++ 
Sbjct: 284 RRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVE 343

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAF 440
              +   EM  R ++   VT   L + +
Sbjct: 344 HGMKLFCEMSQRGVVRNTVTYTILIQGY 371



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 150/326 (46%), Gaps = 10/326 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +  G G + +   +N ++D L K+ + +   + +  M++DG+   + T+ S+    C 
Sbjct: 174 FDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCS 233

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
           +G++ +A      M+   +  DV   N+L+ A C +E + S A EF    +++ +DPD  
Sbjct: 234 SGRWSDATRMVSCMTKREIYPDVFTFNALIDA-CVKEGRVSEAEEFYEEMIRRSLDPDIV 292

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++++L+ G      ++EA + FG MV +  + P+ V+ Y   +    + K+V+  +K   
Sbjct: 293 TYSLLIYGLCMYSRLDEAEEMFGFMVSKGCF-PD-VVTYSILINGYCKSKKVEHGMKLFC 350

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M           ++  +    +      A +++   MVF G  P+ +TYN++   L  N
Sbjct: 351 EMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFR-RMVFCGVHPNIITYNVLLHGLCDN 409

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
            ++ +      +M KN      +     I  +  A E   A +I+  +   G++P   + 
Sbjct: 410 GKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTY 469

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNR 424
             +++GL   G    +RR A+ +  +
Sbjct: 470 TTMMLGLYKKG----LRREADALFRK 491


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 142/302 (47%), Gaps = 12/302 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G + +   +  +++V+ K+G+       +R M+E  + L    ++ I D  C  G  D A
Sbjct: 321 GCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNA 380

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
              F+ M M G+  +++  N L+   C        A    + +K+ ++P+  +F++L++ 
Sbjct: 381 FNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDS 440

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + KEG + EA +   EM+ R    P+  + Y + +    +   +D+A + + +M  + C 
Sbjct: 441 FVKEGKLREAEELHKEMIHR-GIAPD-TITYTSLIDGFCKENHLDKANQMVDLMVSKGCD 498

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P ++ F+  ++   K N     ++L+   M   G   D++TYN + +   +  +++  ++
Sbjct: 499 PNIRTFNILINGYCKANRIDDGLELFR-KMSLRGVVADTVTYNTLIQGFCELGKLNVAKE 557

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            F EM+  +  P  +     +  L D  E E A+EI+  I        E S  EL +G+ 
Sbjct: 558 LFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI--------EKSKMELDIGIY 609

Query: 407 NL 408
           N+
Sbjct: 610 NI 611



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 154/344 (44%), Gaps = 12/344 (3%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +++ L   GR  +    V  M E G    L T  ++ +  C +GK  EA++  D M  +G
Sbjct: 262 LINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYG 321

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEA 236
            + + V    +L+ +C+   QT+ A+E L +++ + +  D   ++I+++G  K G+++ A
Sbjct: 322 CQPNAVTYGPVLNVMCKS-GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNA 380

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
              F EM    +    +++ Y   +       + D+  K LR M      P +  FS  +
Sbjct: 381 FNLFNEM--EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLI 438

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
           D  VK      A +L    M+  G  PD++TY  + +   K   + +  +    M+    
Sbjct: 439 DSFVKEGKLREAEELHK-EMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGC 497

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
            P        I     A+  +  +E++  +   G++    + N L+ G   LG+L+  + 
Sbjct: 498 DPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKE 557

Query: 417 FAEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
             +EM++R+    I+ Y++ +  L      ES    +IF+ +E+
Sbjct: 558 LFQEMVSRKVPPNIVTYKILLDGL--CDNGESEKALEIFEKIEK 599



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/302 (20%), Positives = 127/302 (42%), Gaps = 8/302 (2%)

Query: 147 LPT---FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           LPT   F+ +F +     +YD  +     M + G+  ++  ++ +++  CR   +   A 
Sbjct: 183 LPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCR-KLCLAF 241

Query: 204 EFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
             + ++ K+  +P+  +F+ L+ G   EG V EA +    MVE     P+ ++   T + 
Sbjct: 242 SAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH-KPD-LITINTLVN 299

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
            L    +  EA+  +  M    C P    +   L+++ K   +  A++L   M   +   
Sbjct: 300 GLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL 359

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
            D++ Y++I + L K+  +      F+EM         +     I    +A   +   ++
Sbjct: 360 -DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKL 418

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
              +++  I P   + + L+      G+L +     +EM++R I    +T   L   F  
Sbjct: 419 LRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCK 478

Query: 443 ES 444
           E+
Sbjct: 479 EN 480



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 1/130 (0%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + +++D L  NG  E+      ++ K    L +  +  I    C A K D+A   F  +
Sbjct: 573 TYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL 632

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
            + GV+  V   N ++  +C++   +   L F    +    PDG ++ IL+     +G+ 
Sbjct: 633 PLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDA 692

Query: 234 EEANKTFGEM 243
            ++ K   E+
Sbjct: 693 TKSVKLIEEL 702


>gi|255551140|ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544438|gb|EEF45959.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 577

 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 108/490 (22%), Positives = 199/490 (40%), Gaps = 69/490 (14%)

Query: 24  TTSPTSHNPHRPTR--PRFPTHLDAP-----YISSSARIICEILAHASSDDIESALACTG 76
           ++SP S   HR  +  P  P  L +P     Y  S    +C +L+  +   +E+AL  TG
Sbjct: 25  SSSPDSPRHHRRPKWTPPLPEKLPSPTANPNYSHSDFSTLCNLLSDPNLKPLETALDQTG 84

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWN 134
           I P   L++ V      SP      F WA +      S   +N +++ LGK   F+  W 
Sbjct: 85  IKPETSLLNAVFDHFNSSPKLLHSLFVWADKQPEFESSTTLFNSVINALGKMKEFDSAW- 143

Query: 135 AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA-------VNS 187
              V+   G++S  TFA +   Y  AG    A+ +F+    + +  D +        +  
Sbjct: 144 -CLVLDRTGLVSSDTFAILIRRYTRAGMPQSAIRTFE----YAISLDFICDYNCDALLEI 198

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVD---PDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           LL ++C+ E     A E+ +  K++     P    + I+L GW +   ++ A + + EM 
Sbjct: 199 LLDSLCK-EGHVRVAKEYFDSRKQLDSCWIPHVRIYNIMLNGWFRSRKLKHAERLWLEM- 256

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV---- 300
           ++   +P  V+ Y T +    R ++V+ A++ + VM+ E   P    ++  +D L     
Sbjct: 257 KKNNVSPS-VVTYGTLVEGYCRMRRVERAIELVDVMRKEGIEPNALVYNPIIDALAEEGR 315

Query: 301 -------------------------------KLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
                                          K  D   A ++   MM+  G  P   TYN
Sbjct: 316 FKEVSGMMEYFLQSESGPTISTYNSLVKGYCKAKDPVGASKVLK-MMISRGFVPTPTTYN 374

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
             F    K   + E    + +MI++ + P  L     + ML + +  ++A++I   +   
Sbjct: 375 YFFRHFSKFGMIEEGMNLYTKMIESGYTPDRLTFHLLLKMLCEEERLDLAVQISKEMRSR 434

Query: 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL-----KKAFYNES 444
           G     A++  L+     + R  +     E+M+ + I+   +T  +L     K+     +
Sbjct: 435 GCDMDLATSTMLIHLFCRMHRFEEAFMEFEDMIQKGIVPQYLTFQRLNDELRKRGMVERA 494

Query: 445 RSMRDIFDSL 454
           R + D+  S+
Sbjct: 495 RKLSDMMSSV 504


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 150/337 (44%), Gaps = 8/337 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F     +G   +  ++ +++D L KN  F+        MK +GV +   T+  + D  C 
Sbjct: 356 FHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 415

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
            G  DEAV+  + MS  G++ D+V  ++L++  CR   +   A E + R+ ++ + P+G 
Sbjct: 416 NGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRV-GRLKTAKEIVCRIYRVGLSPNGI 474

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWN-PEHVLAYETFLITLIRGKQVDEALKFL 277
            ++ L+    + G ++E  + +  M+   E N P+H   +   + +L +  +V EA +F+
Sbjct: 475 IYSTLIYNCCRMGCLKETIRIYEAMI--LEGNTPDH-FTFNVLVTSLCKAGKVAEAEEFM 531

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
           R M  +   P    F   ++      +   A  ++D M    G  P   TY  + + L K
Sbjct: 532 RCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKV-GHHPTFFTYGSLLKGLCK 590

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
              +   EKF   +         + C T IT +  +   + A+ ++  +++  ILP   +
Sbjct: 591 GGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFT 650

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
              L+ GL   G+      FA+E   R  L+    M+
Sbjct: 651 YTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVMY 687



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 134/309 (43%), Gaps = 4/309 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N++++VL   G F++    ++ M++ G   ++ T+ ++   YC  G++  A+   D M
Sbjct: 195 TFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHM 254

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           ++ GV  DV   N L+  +CR        L   +  K+++ P+  ++  LL G+  EG V
Sbjct: 255 NLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKV 314

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A +   EM+  F  +P HV  +   +   I      EALK   +M+ +    T   + 
Sbjct: 315 LIARQLLNEMLT-FGLSPNHV-TFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYG 372

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             LD L K N      + + + M  +G     +TY  + + L KN  + E     +EM K
Sbjct: 373 VLLDGLCK-NAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSK 431

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           +   P  +  +  I         + A EI   I   G+ P     + L+     +G L +
Sbjct: 432 DGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKE 491

Query: 414 VRRFAEEML 422
             R  E M+
Sbjct: 492 TIRIYEAMI 500



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/316 (20%), Positives = 122/316 (38%), Gaps = 42/316 (13%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N++V  L K G+  +    +R M  DG+L +  +F  + + Y  +G+  +A   FD 
Sbjct: 509 FTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDE 568

Query: 173 MSMHG-----------------------------------VEQDVVAVNSLLSAICRQEN 197
           M+  G                                      D V  N+L++A+C+  N
Sbjct: 569 MTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGN 628

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
                  F   V++ + PD  ++  L+ G  ++G    A     E   R    P  V+ Y
Sbjct: 629 LDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVM-Y 687

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN--DSTHAVQLWDIM 315
             F+  + +  Q      F + M        +   +  +D   ++   + TH + L+++ 
Sbjct: 688 TCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDL-LFEMG 746

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
               G  P+  TYN++     K K V      +  MI +   P  L C + I  + +++ 
Sbjct: 747 NQNQG--PNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGICESNM 804

Query: 376 PEIAIEIWNYILENGI 391
            EI ++I    +  G+
Sbjct: 805 LEIGLKILKAFICRGV 820



 Score = 41.6 bits (96), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 85/210 (40%), Gaps = 5/210 (2%)

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           FG ++  +     +   ++  +   +R   + ++L+  R+M      P++ +  NA  IL
Sbjct: 109 FGALMATYRLCNSNPSVFDILIRVYLREGMIQDSLEIFRLMGLYGFNPSV-YTCNA--IL 165

Query: 300 VKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
             +  S   V +W  +  M+     PD  T+N++   L       +      +M K+ + 
Sbjct: 166 GSIVKSCEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYA 225

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
           PT +   T +         + AIE+ +++   G+     + N L+  L    R +     
Sbjct: 226 PTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLL 285

Query: 418 AEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
             +M  R I   EVT + L   F NE + +
Sbjct: 286 LRDMRKRMIHPNEVTYNTLLNGFSNEGKVL 315


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 159/348 (45%), Gaps = 14/348 (4%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY-AWNLMVDVLGKNGRFEQMWNAVRV 138
           +P +V  ++Q +  +P     FF WA   +R   + + +L+ D+L      E     +  
Sbjct: 58  SPKIVTSIIQ-NPPNPQLGFRFFIWASNFKRFRAWESCDLITDLLINQNGLELYCQTLEA 116

Query: 139 MKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           +K  G+ +    F  +   Y   G  D+A+ +F  M       DV   N +L  +  Q+N
Sbjct: 117 LKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLI-QKN 175

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
               AL    R+ K+   P+  +F+IL++G  K GNV++A   F EM +R    P+    
Sbjct: 176 FLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQR-GILPD-AFT 233

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFP---TLKFFSNALDILVKLNDSTHAVQLWD 313
           Y   +  L R K+VD+A +    MK     P   T     N   +L +++++   ++L++
Sbjct: 234 YCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFE 293

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
                 G   D   Y+ +   L + KR  +V+  + +MI++  +P        +  L +A
Sbjct: 294 K----DGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEA 349

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            +   A+E+ N + E+G++P     N L+ G  ++G LS+ R    E+
Sbjct: 350 GKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEI 397



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 134/302 (44%), Gaps = 10/302 (3%)

Query: 114 YAWNLMVDVL-GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+++DVL  KN     +    R+MK + + ++ TF+ + D  C +G   +A+  FD 
Sbjct: 162 YTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDE 221

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M+  G+  D      ++S +CR + +   A    +++K   V PD  +   LL G+    
Sbjct: 222 MTQRGILPDAFTYCVVISGLCRSK-RVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLD 280

Query: 232 NVEEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            V+EA      ++  FE +     V  Y   +  L R K+ ++     R M  +N  P +
Sbjct: 281 RVDEAF----SLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDV 336

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             ++  +  L +      A++L +  M   G  PD++ YN++ +       + E      
Sbjct: 337 YLYTIMMKGLAEAGKVRDALELLN-EMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQL 395

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           E+ +++  P     +  I+ +        A EI+N + + G  P   + N L+ GL   G
Sbjct: 396 EISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTG 455

Query: 410 RL 411
           +L
Sbjct: 456 QL 457



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 120/289 (41%), Gaps = 15/289 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y + +M+  L + G+       +  M E GV+     +  +   +C  G   EA      
Sbjct: 337 YLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLE 396

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           +S H    +V   + L+S +CR    T  A E  N ++K+   P   +F  L++G  K G
Sbjct: 397 ISRHDCFPNVKTYSILISGMCRN-GLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTG 455

Query: 232 NVEEANKTFGEM--------VERFEWNPEHVL---AYETFLITLIRGKQVDEALKFLRVM 280
            +E+A+  F +M          R    P HVL   + +  +  L     + +A + L  +
Sbjct: 456 QLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQL 515

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                 P +  ++  ++   KL +   A +L+  M  F G  PD++TY  +   L++ +R
Sbjct: 516 ADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQ-FKGLSPDTVTYGTLINGLLRFQR 574

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
             +  K F +M KN   P      T +T +    E   A  +W   L N
Sbjct: 575 EEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRN 623



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 131/302 (43%), Gaps = 21/302 (6%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L    ++ ++  L +  R+E +    R M ED V   +  +  +      AGK  +A
Sbjct: 296 GYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDA 355

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT-SRALEFLNRVKKIVDPDGDSFAILLE 225
           +   + M+  GV  D V  N L+   C     + +R+L+ L   +    P+  +++IL+ 
Sbjct: 356 LELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQ-LEISRHDCFPNVKTYSILIS 414

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA-LKFLRVMKGEN 284
           G  + G   +A + F EM E+    P  V  + + +  L +  Q+++A L F ++  G N
Sbjct: 415 GMCRNGLTRDAQEIFNEM-EKLGCYPSAV-TFNSLIDGLCKTGQLEKAHLLFYKMEIGRN 472

Query: 285 CFPTL-----KFFSNALD------ILVKLNDSTHAVQLWDIMMVF--HGAFPDSLTYNMI 331
             P+L     +  S+ LD      ++ +L DS    + + I+M     G  P   TYN++
Sbjct: 473 --PSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNIL 530

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
                K    +   K F EM      P  +   T I  LL     E A ++++ + +NG 
Sbjct: 531 VNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGC 590

Query: 392 LP 393
            P
Sbjct: 591 TP 592



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 92/213 (43%), Gaps = 4/213 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
             + A  G     Y +N++V+   K G F   +   R M+  G+     T+ ++ +    
Sbjct: 512 LMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLR 571

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             + ++A   FD M  +G   D     ++++ +CR+  +  RA     +  + +    D 
Sbjct: 572 FQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRM-ELPRAFSLWLKYLRNIRSQEDE 630

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
               +EG+ ++  VE+A +   EM   F+ N   +  Y  +LI L + ++V EALK   +
Sbjct: 631 AIKAIEGYFEKQEVEKAVRGLLEM--DFKLNDFDLGPYAIWLIGLCQTRRVGEALKIFLI 688

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           ++      T       +  L+K  D   A+ ++
Sbjct: 689 LEEYKVVITPPCCVKLIYFLLKEGDLDRAIDVF 721


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 160/364 (43%), Gaps = 10/364 (2%)

Query: 86  EVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV- 144
           +VL LS D       F  +  +G  ++ +A N ++   G  G  E++    R MKE G+ 
Sbjct: 163 DVLSLSSDFDRVRCIFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIE 222

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
            SL TF  + +    +   + A   F+VM    +  DVV+ N+++   C+  N T +A+E
Sbjct: 223 PSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGN-TKKAME 281

Query: 205 -FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            F +  K+ ++PD  ++  L++    EGN +     + EM ER    P H  AY   +  
Sbjct: 282 KFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPH--AYSLVIGG 339

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L +  +  E       M  + C   +  ++  +D   K  +   A+ L++  M   G  P
Sbjct: 340 LCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFE-RMKGEGFEP 398

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D +TY +I   L K+ R+ E  ++F     NE     +  ++ I  L  A   + A + +
Sbjct: 399 DDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFF 458

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDV----RRFAEEMLNRRILIYEVTMHKLKKA 439
             ++E G        N L+  L   G++ +     +R  +E  ++ +  Y + +  L K 
Sbjct: 459 EEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKE 518

Query: 440 FYNE 443
             NE
Sbjct: 519 HRNE 522



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 120/274 (43%), Gaps = 5/274 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++  +    G +D  +  +  M   G+E    A + ++  +C+       +  F N 
Sbjct: 297 TYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENM 356

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRG 267
            KK    +   +  L++ + K GNV EA   F  M  E FE  P+ V  Y   +  L + 
Sbjct: 357 NKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFE--PDDV-TYGVIVNGLCKS 413

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            ++DEA+++    K         F+S+ +D L K      A + ++  MV  G   DS  
Sbjct: 414 GRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFE-EMVERGCPQDSYC 472

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN + + L K+ ++ E    F  M K     T       I+ L      E A+++W+ ++
Sbjct: 473 YNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMI 532

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           + GI P  AS   L VGL   G+++   +  +E+
Sbjct: 533 DKGITPTTASFRALSVGLCLSGKVARACKILDEL 566


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 155/326 (47%), Gaps = 16/326 (4%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKY 163
           +G    P    ++ ++D   KNG  E+ +  +  M++ G+   +  ++++   +C  G  
Sbjct: 191 KGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDI 250

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFA 221
           +     F+ M    V  +VV  + L++A+C+++   + ++ L+ +   K  V PD  ++ 
Sbjct: 251 ERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCK--VRPDVVAYT 308

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +L +G  K G   +A K    MV+R E  P +V  Y   +  L +  +VD+AL  L  M 
Sbjct: 309 VLADGLSKNGRASDAIKVLDLMVKRGE-EPNNV-TYNAIINGLCKEGRVDDALGILETMA 366

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV--FHGAFPDSLTYNMIFECLIKNK 339
            +   P +  +S  +  L  +     AV L +++M   FH   PD   +N++ + L K +
Sbjct: 367 KKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFH-IKPDVFAFNLVIQELCKQR 425

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           R+   ++ ++ M++  +    +     I   L A +   A+E+W   +++GI P  A+  
Sbjct: 426 RLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYT 485

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRR 425
            L+ GL  +  LS     A+ + N++
Sbjct: 486 VLINGLCKMQMLS----IAKGLFNKK 507



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 126/288 (43%), Gaps = 11/288 (3%)

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           +MK    L++  F  +   +C +G   +A+  F +M  + +  D V+ N++++ +C+ + 
Sbjct: 120 IMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGK- 178

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVL 255
           +   A E    +K     P+  +F+ L++G+ K G+VEE    FG + E  +   E  V 
Sbjct: 179 RLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEG---FGLLEEMEKMGLEGDVF 235

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y   +        ++   +    M  +N  P +  +S  ++ L K      A Q+ D M
Sbjct: 236 VYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTM 295

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
                  PD + Y ++ + L KN R  +  K    M+K   +P  +     I  L     
Sbjct: 296 TGCK-VRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGR 354

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
            + A+ I   + + G  P   + + L+ GL  +G++ +    A ++LN
Sbjct: 355 VDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDE----AVDLLN 398



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 140/324 (43%), Gaps = 14/324 (4%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGK 162
           G ++ P   A+ ++ D L KNGR       + +M + G    P   T+ +I +  C  G+
Sbjct: 297 GCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRG--EEPNNVTYNAIINGLCKEGR 354

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI---VDPDGDS 219
            D+A+   + M+  G + DVV  ++L+  +C    +   A++ LN +      + PD  +
Sbjct: 355 VDDALGILETMAKKGKKPDVVTYSTLVKGLC-GVGKIDEAVDLLNLLMSKEFHIKPDVFA 413

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F ++++   K+  +  A + +  MVER    P +++ Y   +   +   ++ +AL+  + 
Sbjct: 414 FNLVIQELCKQRRLRHAKRVYYTMVER--GFPSNIVTYNILIDGYLSAGKLTKALELWKD 471

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
                  P    ++  ++ L K+   + A  L++      G  P    YN +   L +  
Sbjct: 472 AVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRA-SGTRPTVSEYNTLMASLCRES 530

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
            V +    F EM      P  ++    I   L A + E A E+   +L   ++P   + +
Sbjct: 531 SVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFS 590

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLN 423
            L+     LG+L +     E M++
Sbjct: 591 ILINRFLKLGQLDEAASLYERMVS 614



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/363 (19%), Positives = 154/363 (42%), Gaps = 13/363 (3%)

Query: 75  TGIIPTPDLV-HEVLQLSYDSPSSAVDFFR----WAGRGQRLSPYAWNLMVDVLGKNGRF 129
           TG    PD+V + VL         A D  +       RG+  +   +N +++ L K GR 
Sbjct: 296 TGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRV 355

Query: 130 EQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM---SMHGVEQDVVAV 185
           +     +  M + G    + T++++    CG GK DEAV   +++     H ++ DV A 
Sbjct: 356 DDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFH-IKPDVFAF 414

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           N ++  +C+Q         +   V++    +  ++ IL++G+   G + +A + + + V+
Sbjct: 415 NLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVD 474

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
               +P +   Y   +  L + + +  A       +     PT+  ++  +  L + +  
Sbjct: 475 S-GISP-NAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSV 532

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
             A  L+  M   +   PD +++N+I +  +K   V   ++   EM+     P  +  + 
Sbjct: 533 EQARNLFQEMRNANHD-PDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSI 591

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
            I   L   + + A  ++  ++  G +P     + LL G    G+   V    ++M ++ 
Sbjct: 592 LINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMADKD 651

Query: 426 ILI 428
           +++
Sbjct: 652 VVL 654



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 135/321 (42%), Gaps = 9/321 (2%)

Query: 146 SLPTFAS---IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202
           S+P+++S   + D+   A  YD  +     M+   V     ++++L+ +    + + S A
Sbjct: 55  SIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQ-KPSFA 113

Query: 203 LEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
              L  + K+    +  +F +LL+G+ + G+  +A   F  M++R    P+ V +Y T +
Sbjct: 114 FGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFC-MMKRNCLIPDCV-SYNTVI 171

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             L +GK++ EA +  + MKG  C P    FS  +D   K  D      L + M    G 
Sbjct: 172 NGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKM-GL 230

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
             D   Y+ +         +   ++ F+EM++    P  +  +  +  L    + + A +
Sbjct: 231 EGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQ 290

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
           + + +    + P   +   L  GL   GR SD  +  + M+ R      VT + +     
Sbjct: 291 MLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLC 350

Query: 442 NESRSMRDIFDSLERRCKTSQ 462
            E R + D    LE   K  +
Sbjct: 351 KEGR-VDDALGILETMAKKGK 370


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 142/301 (47%), Gaps = 6/301 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +     +N++++ + K GR ++    +  M   G   ++ T   I  S C  G++ +
Sbjct: 273 KGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMD 332

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A      M   G    VV  N L++ +CR+     RA++ L ++ K    P+  S+  LL
Sbjct: 333 AERLLADMLRKGCSPSVVTFNILINFLCRKR-LLGRAIDVLEKMPKHGCMPNSLSYNPLL 391

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ +E  ++ A +    MV R  + P+ ++ Y T L  L +  + D A++ L  +  + 
Sbjct: 392 HGFCQEKKMDRAIEYLEIMVSRGCY-PD-IVTYNTLLTALCKDGKADAAVEILNQLSSKG 449

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C P L  ++  +D L K+  + +A +L +  M   G  PD +TY+ +   L    +V E 
Sbjct: 450 CSPVLITYNTVIDGLTKVGKTEYAAELLE-EMRRKGLKPDIITYSTLLRGLGCEGKVDEA 508

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            K FH+M     +P+ +     +  L  A +   AI+   Y++E G  P +A+   L+ G
Sbjct: 509 IKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEG 568

Query: 405 L 405
           +
Sbjct: 569 I 569



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 150/327 (45%), Gaps = 13/327 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++    K+G  ++   A++V++   V   + T+ +I  S C +GK  EA+   D   
Sbjct: 180 YNVLIGGYCKSGEIDK---ALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQM 236

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
                 DV+    L+ A C  ++   +A++ L+ + KK   PD  ++ +L+ G  KEG +
Sbjct: 237 QRECYPDVITYTILIEATC-NDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRL 295

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA K    M   +   P +V+ +   L ++    +  +A + L  M  + C P++  F+
Sbjct: 296 DEAIKFLNNM-PLYGCQP-NVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFN 353

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             ++ L +      A+ + +  M  HG  P+SL+YN +     + K++    ++   M+ 
Sbjct: 354 ILINFLCRKRLLGRAIDVLE-KMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVS 412

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               P  +   T +T L    + + A+EI N +   G  P+  + N ++ GL  +G+   
Sbjct: 413 RGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEY 472

Query: 414 VRRFAEEM----LNRRILIYEVTMHKL 436
                EEM    L   I+ Y   +  L
Sbjct: 473 AAELLEEMRRKGLKPDIITYSTLLRGL 499



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 148/334 (44%), Gaps = 7/334 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +A N+ +  L +NG  E+    + R++ +  +  +    S+   +C +GK  +A    ++
Sbjct: 108 FASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEI 167

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           +   G   DV+  N L+   C+   +  +AL+ L R+   V PD  ++  +L      G 
Sbjct: 168 LENSGAVPDVITYNVLIGGYCKS-GEIDKALQVLERMS--VAPDVVTYNTILRSLCDSGK 224

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA +     ++R E  P+ V+ Y   +        V +A+K L  M+ + C P +  +
Sbjct: 225 LKEAMEVLDRQMQR-ECYPD-VITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTY 282

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  ++ + K      A++  +  M  +G  P+ +T+N+I   +    R  + E+   +M+
Sbjct: 283 NVLINGICKEGRLDEAIKFLN-NMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADML 341

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +    P+ +     I  L        AI++   + ++G +P   S N LL G     ++ 
Sbjct: 342 RKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMD 401

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446
               + E M++R      VT + L  A   + ++
Sbjct: 402 RAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKA 435



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 152/353 (43%), Gaps = 11/353 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L  +G+ ++    + R M+ +    + T+  + ++ C      +A+   D M 
Sbjct: 212 YNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMR 271

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G + DVV  N L++ IC+ E +   A++FLN +      P+  +  I+L      G  
Sbjct: 272 KKGCKPDVVTYNVLINGICK-EGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRW 330

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A +   +M+ R   +P  V+ +   +  L R + +  A+  L  M    C P    ++
Sbjct: 331 MDAERLLADML-RKGCSPS-VVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYN 388

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             L    +      A++  +IM V  G +PD +TYN +   L K+ +     +  +++  
Sbjct: 389 PLLHGFCQEKKMDRAIEYLEIM-VSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSS 447

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               P  +   T I  L    + E A E+   +   G+ P   + + LL GL   G++ +
Sbjct: 448 KGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDE 507

Query: 414 VRRFAEEMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 462
             +   +M    I    + Y   M  L KA    SR++  +   +E+ CK ++
Sbjct: 508 AIKIFHDMEGLSIKPSAVTYNAIMLGLCKA-QQTSRAIDFLAYMVEKGCKPTK 559


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 134/332 (40%), Gaps = 7/332 (2%)

Query: 104 WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGK 162
            +G G   +   +N ++D L K  + E+ +  +  +   G V  + T+  I D  C  G+
Sbjct: 141 MSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGR 200

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            D+A+   + M   G    V+   +L+  +CR          F   V K    D  ++  
Sbjct: 201 LDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVS 260

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+ K    +EA K    +V+     P ++  Y   +    +  ++DE       M  
Sbjct: 261 LVNGYCKSSRTKEAQK----VVDGIRGTP-YIDVYNALMDGYCKEGRLDEIPNVFEDMAC 315

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
             C P +K ++  +D L K      A    + M    G  PD ++YN+I + L K  +  
Sbjct: 316 RGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMH-SAGCVPDVVSYNIIIDGLFKASKPK 374

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E  +   +MI+    P  +   T +      +  + A+ I   +++ G+ P   + N L+
Sbjct: 375 EARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLI 434

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
            GL    RL D      EML    ++   T +
Sbjct: 435 SGLSQTNRLGDAYELMHEMLRNGCVVSACTTY 466



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 152/347 (43%), Gaps = 33/347 (9%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           ++++P  + +N+++D L K  + ++    +  M + GV     TF SI D  C AGK++ 
Sbjct: 4   RKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFER 63

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--------PDG 217
           A     VM+           N+L+S +C+Q+N        ++R K +VD        PD 
Sbjct: 64  AHSLLAVMAERNCRPSCCTYNTLISGLCKQQN--------VDRAKTLVDEFVSSGFVPDV 115

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWN--PEHVLAYETFLITLIRGKQVDEALK 275
            +++IL +G  K G ++EA     E+V+    N    +++ Y T +  L +  + ++A +
Sbjct: 116 VTYSILADGLCKRGRIDEAF----ELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYE 171

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
            L  +      P +  ++  +D L K      A+++ + M+   G  P  +TY  + E L
Sbjct: 172 LLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLK-RGCTPSVITYTALMEGL 230

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
            +  RV E    F EM+  +     L   + +     +   + A ++ + I      P  
Sbjct: 231 CRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGT---PYI 287

Query: 396 ASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKK 438
              N L+ G    GRL ++    E+M  R     I  Y + M  L K
Sbjct: 288 DVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCK 334



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 151/384 (39%), Gaps = 44/384 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   A RG   +   +N+++D L K+G+ ++ +  +  M   G +  + ++  I D    
Sbjct: 310 FEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFK 369

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           A K  EA    D M   G+  D V  N+L++  C++E          N +K  VDPD  +
Sbjct: 370 ASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVT 429

Query: 220 FAILLEGWE----------------KEGNVEEANKTFGEMVERF---------------- 247
           +  L+ G                  + G V  A  T+  +++R                 
Sbjct: 430 YNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHM 489

Query: 248 --EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK---FFSNALDILVKL 302
                  + + Y  F+  L +  ++DEA   L  M       TL+    ++  +  L K 
Sbjct: 490 TGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM------DTLRDEVSYTTVIIGLCKA 543

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                A +L   M+   G    S T+N++ +   K KR+ E       M++    P+ + 
Sbjct: 544 EQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVIT 603

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
               IT L   D+ + A E+++ +   GI+    S   L+ GL   GR  +  +  EEM 
Sbjct: 604 YNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMA 663

Query: 423 NRRILIYEVTMHKLKKAFYNESRS 446
           +    I ++   KL  A   + R 
Sbjct: 664 SSDCEIDDLKCRKLYLALRGQGRG 687



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 106/269 (39%), Gaps = 44/269 (16%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M+   V  DV   N L+  +C+  ++T +A E L+  V + V PD  +F  +++G  K G
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKA-SKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAG 59

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             E A+     M ER                                     NC P+   
Sbjct: 60  KFERAHSLLAVMAER-------------------------------------NCRPSCCT 82

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +  L K  +   A  L D   V  G  PD +TY+++ + L K  R+ E  +   EM
Sbjct: 83  YNTLISGLCKQQNVDRAKTLVD-EFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEM 141

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
             N   P  +   T I  L  A + E A E+   ++ +G +P   +   ++ GL   GRL
Sbjct: 142 SGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRL 201

Query: 412 SDVRRFAEEMLNR----RILIYEVTMHKL 436
               +  E ML R     ++ Y   M  L
Sbjct: 202 DKALKMVEGMLKRGCTPSVITYTALMEGL 230



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           A +G  ++ + +NL++D   K  R ++    + +M + G   S+ T+  +    C   K 
Sbjct: 558 AVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKV 617

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK----KIVDPDGDS 219
           D+A   FD M++ G+    V+   L+  +C Q  +   AL+ L  +     +I D     
Sbjct: 618 DKAWELFDEMAVRGIVASSVSYTVLIYGLCGQ-GRGKEALQVLEEMASSDCEIDDLKCRK 676

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFE 248
             + L G   +G  EEA +    M  + +
Sbjct: 677 LYLALRG---QGRGEEAAELLRRMTTKMD 702


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/398 (21%), Positives = 163/398 (40%), Gaps = 72/398 (18%)

Query: 95  PSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           P +   F +   +G   + + +N++++   K  +  + +  ++ MKE G+  ++ T++++
Sbjct: 24  PEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTV 83

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ----------ENQTSRAL 203
              +C   K D A   F  M  +G   ++V  N+LLS +CR           +    R L
Sbjct: 84  IHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGL 143

Query: 204 E-----------FLNRVKKI--------------VDPDGDSFAILLEGWEKEGNVEEANK 238
           +            L +  KI                PD  +++ L+ G  K G ++EA K
Sbjct: 144 QPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACK 203

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
            F +M E     P+ V+ +   +  L +G ++ EA + L  M+  NC P +  +S+ +D 
Sbjct: 204 LFEKMREN-SCEPD-VVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDG 261

Query: 299 LVKLNDSTHAVQLWDIMMV-------------FHG---------------------AFPD 324
           L K      A +++  M+V              HG                       PD
Sbjct: 262 LCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPD 321

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TYN + + L K  R  E  + F +M      P  +  +  I      +  ++A  +++
Sbjct: 322 IITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFD 381

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
            +L+  +LP   + + L+ G  N G + D  R  EEM+
Sbjct: 382 DMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMV 419



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 146/343 (42%), Gaps = 41/343 (11%)

Query: 116 WNLMVDVLGKNGR-------FEQM---------WN-------------------AVRVMK 140
           W +M+D L K  R       F +M         W                     ++ MK
Sbjct: 10  WTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMK 69

Query: 141 EDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT 199
           E G+  ++ T++++   +C   K D A   F  M  +G   ++V  N+LLS +CR     
Sbjct: 70  ESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN-GLM 128

Query: 200 SRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
             A E L+ ++ + + PD  S+  L+ G  K G ++ A K F +        P  V+AY 
Sbjct: 129 DEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFED--NSNGDCPPDVVAYS 186

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
           T +  L +  ++DEA K    M+  +C P +  F+  +D L K +    A Q+ + M   
Sbjct: 187 TLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETME-D 245

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
               P+ +TY+ + + L K  +V + ++ F  MI    +P  +   + I      +  + 
Sbjct: 246 RNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDS 305

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           A+ +   +   G LP   + N L+ GL   GR  +  R   +M
Sbjct: 306 ALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDM 348



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 134/314 (42%), Gaps = 22/314 (7%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++ D  C  G+  EA   F  M       DV+  + L+   C+ E        F + 
Sbjct: 324 TYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDM 383

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +K+ V PD  +F+ L+EG+   G V++A +   EMV   + +P+ V  Y + +    +  
Sbjct: 384 LKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVAS-DCSPD-VYTYTSLVDGFCKVG 441

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           ++ EA + L+ M    C P +  ++  +D   +    T A +L +  MV +G  P+ +TY
Sbjct: 442 RMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLE-EMVGNGVQPNVITY 500

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT---AITMLLDA----DEPEIAIE 381
             +         + E  K    + ++E      NC     A  +++D          A+E
Sbjct: 501 RSLIGGFCGTGDLEEARKMLERLERDE------NCKADMFAYRVMMDGLCRTGRMSAALE 554

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM-LNRR----ILIYEVTMHKL 436
           +   I ++G  P       L+ GL     L       EEM L+R+       YE  + +L
Sbjct: 555 LLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQEL 614

Query: 437 -KKAFYNESRSMRD 449
            ++  + E+ ++ D
Sbjct: 615 AREGRHEEANALAD 628



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 91/209 (43%), Gaps = 1/209 (0%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ S+ D +C  G+  EA      M+  G + +VV   +L+ A CR    T         
Sbjct: 429 TYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEM 488

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V   V P+  ++  L+ G+   G++EEA K   E +ER E     + AY   +  L R  
Sbjct: 489 VGNGVQPNVITYRSLIGGFCGTGDLEEARKML-ERLERDENCKADMFAYRVMMDGLCRTG 547

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           ++  AL+ L  +K     P    +   +  L +  +   A+++ + M +   + P++  Y
Sbjct: 548 RMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAY 607

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
             + + L +  R  E      E++ N+ Q
Sbjct: 608 EAVIQELAREGRHEEANALADELLGNKGQ 636



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 13/208 (6%)

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERF----EWNPEHVLAYETFLITLIRGKQVDEAL 274
           ++ I+++G  K   + EA   F +M ++     EW       Y   +    +  +V  A 
Sbjct: 9   TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWT------YNVLINGFCKVHKVHRAY 62

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
             L+ MK     P +  +S  +    +      A +L+   MV +G  P+ +TYN +   
Sbjct: 63  LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFR-QMVENGCMPNLVTYNTLLSG 121

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L +N  + E  +   EM +   QP   +  T +  L    + ++A++++     NG  P 
Sbjct: 122 LCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDN-SNGDCPP 180

Query: 395 EASA-NELLVGLRNLGRLSDVRRFAEEM 421
           +  A + L+ GL   GRL +  +  E+M
Sbjct: 181 DVVAYSTLIAGLCKTGRLDEACKLFEKM 208



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 1/129 (0%)

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           +D L K N    A   +   M   G  P+  TYN++     K  +VH       EM ++ 
Sbjct: 14  IDGLCKANRLPEATTYF-AKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESG 72

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
             P  +  +T I       + + A +++  ++ENG +P   + N LL GL   G + +  
Sbjct: 73  LAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAY 132

Query: 416 RFAEEMLNR 424
              +EM  R
Sbjct: 133 ELLDEMRER 141



 Score = 44.7 bits (104), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 71/160 (44%), Gaps = 1/160 (0%)

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           ++V+ +   +  L +  ++ EA  +   MK +   P    ++  ++   K++   H   L
Sbjct: 5   KNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVH-KVHRAYL 63

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
               M   G  P+ +TY+ +     +  +V    K F +M++N   P  +   T ++ L 
Sbjct: 64  LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 123

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
                + A E+ + + E G+ P + S + L+ GL   G++
Sbjct: 124 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKI 163


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 133/302 (44%), Gaps = 6/302 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N ++  L   GR +     +  M   G V  + T+  + ++ C    Y +AV   D 
Sbjct: 153 YTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDE 212

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   G   D+V  N +++ IC QE +   A+EFL  +     +P+  S+ I+L+G     
Sbjct: 213 MRDKGCAPDIVTYNVVVNGIC-QEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAE 271

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             E+A K   EM  +    P +V+ +   +  L R   V+ A++ L  +    C P    
Sbjct: 272 RWEDAEKLMAEMSRK--GRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLS 329

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  L    K      A+   + +MV  G +PD ++YN +   L +   V    +  H++
Sbjct: 330 YNPILHAFCKQKKMDRAMAFVE-LMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQL 388

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
                 P  ++  T I  L  A + E A+E+ N ++  G+ P   + + +  GL   GR+
Sbjct: 389 KDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRI 448

Query: 412 SD 413
            +
Sbjct: 449 EE 450



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 160/356 (44%), Gaps = 23/356 (6%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP------TFASIFDSYCGAGKYDEAVM 168
           ++N MV      G   Q+ NA R+     V ++P      T+ ++    CG G+ D A+ 
Sbjct: 122 SYNAMVAGYCVTG---QLDNARRL-----VAAMPMEPDTYTYNTLIRGLCGRGRTDNALA 173

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGW 227
             D M   G   DVV    LL A C++     +A++ L+ ++ K   PD  ++ +++ G 
Sbjct: 174 VLDDMLRRGCVPDVVTYTILLEATCKRSGY-KQAVKLLDEMRDKGCAPDIVTYNVVVNGI 232

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            +EG V++A + F + +  +   P  V +Y   L  L   ++ ++A K +  M  +   P
Sbjct: 233 CQEGRVDDAME-FLKSLPSYGCEPNTV-SYNIVLKGLCTAERWEDAEKLMAEMSRKGRPP 290

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
            +  F+  +  L +      A+++ D  +  +G  P+SL+YN I     K K++     F
Sbjct: 291 NVVTFNMLISFLCRRGLVEPAMEILD-QIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAF 349

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
              M+ +   P  ++  T +T L    E + A+E+ + + + G  P+  S N ++ GL  
Sbjct: 350 VELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTK 409

Query: 408 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 463
            G+  +      EM+ + +    +T   +      E R    I ++++  CK   M
Sbjct: 410 AGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGR----IEEAIKAFCKVQDM 461



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 8/248 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYD 164
           +G+  +   +N+++  L + G  E     +  + + G    SL ++  I  ++C   K D
Sbjct: 286 KGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSL-SYNPILHAFCKQKKMD 344

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAIL 223
            A+   ++M   G   D+V+ N+LL+A+CR   +   A+E L+++K K   P   S+  +
Sbjct: 345 RAMAFVELMVSSGCYPDIVSYNTLLTALCRG-GEVDAAVELLHQLKDKGCTPVLISYNTV 403

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G  K G  EEA +   EMV +    P+ ++ Y T    L R  +++EA+K    ++  
Sbjct: 404 IDGLTKAGKTEEALELLNEMVTK-GLQPD-IITYSTISSGLCREGRIEEAIKAFCKVQDM 461

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P    ++  L  L K   +  A+ L+   MV +G  P+  TY ++ E L     V E
Sbjct: 462 GIRPNTVLYNAILLGLCKRRATHSAIDLF-TYMVSNGCMPNESTYTILIEGLAYEGLVKE 520

Query: 344 VEKFFHEM 351
             +   E+
Sbjct: 521 AREMMAEL 528



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 66/133 (49%), Gaps = 1/133 (0%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N ++D L K G+ E+    +  M   G+   + T+++I    C  G+ +EA+ +F  +
Sbjct: 399 SYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKV 458

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  + V  N++L  +C++    S    F   V     P+  ++ IL+EG   EG V
Sbjct: 459 QDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLV 518

Query: 234 EEANKTFGEMVER 246
           +EA +   E+  R
Sbjct: 519 KEAREMMAELCSR 531


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 124/276 (44%), Gaps = 3/276 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  I +  C   + D+A+ + + M+  G++ D    N +LS +C++E      L F   
Sbjct: 11  TYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKM 70

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           VK+ ++P+  ++  L+ G  K   +E A + F EM  +  + P  V +Y T +    + K
Sbjct: 71  VKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGK-GYVPTEV-SYNTLIDGFCKKK 128

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            +  A      M   NC P +  ++  +D L K      A ++ D  MV  G  P+  TY
Sbjct: 129 DLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLD-GMVKKGVTPNVATY 187

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           + + +   K +RV E  K   +M+     PT +     +  L  AD+ E A +++  + +
Sbjct: 188 SCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQ 247

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
               P   + N LL  L +  +L    R   EM+ +
Sbjct: 248 RRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAK 283



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 3/228 (1%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + PD   +  +L G  +E  VEEA   F +MV++   NP +V+ Y T +  L +  +++ 
Sbjct: 40  IKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQ-RINP-NVVTYNTLINGLCKAWRIET 97

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A +  + M G+   PT   ++  +D   K  D   A  ++D  MV     P+ +TY  + 
Sbjct: 98  AYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFD-KMVRSNCVPNVVTYTTLI 156

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
           + L K+ +V    +    M+K    P     +  I         + A ++   ++  GI 
Sbjct: 157 DGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIA 216

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           P   + N LL  L    +L D  +    M  RR     VT + L +A 
Sbjct: 217 PTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRAL 264



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 3/167 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  ++D L K+G+ +     +  M + GV  ++ T++ + D +C   + DEA    + M 
Sbjct: 152 YTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMV 211

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+   VV  N LL+++CR +        F    ++   P   ++  LL        ++
Sbjct: 212 TQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLD 271

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            A++ + EM+ +    P   + Y+T    L R  +V EA + +  MK
Sbjct: 272 GAHRLYAEMIAK--GCPPDAITYDTLAWGLTRAGKVHEAQELMEKMK 316



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 74/178 (41%), Gaps = 1/178 (0%)

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
           + P   L Y   +  L + K++D+AL  +  M      P    ++  L  L +      A
Sbjct: 4   YAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEA 63

Query: 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 368
             L++  MV     P+ +TYN +   L K  R+    + F EM    + PT ++  T I 
Sbjct: 64  RLLFE-KMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLID 122

Query: 369 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
                 +   A ++++ ++ +  +P   +   L+ GL   G++       + M+ + +
Sbjct: 123 GFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGV 180



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 2/138 (1%)

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
           A PD+LTY  I E L K KR+ +      EM     +P        ++ L   ++ E A 
Sbjct: 5   APPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEAR 64

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
            ++  +++  I P   + N L+ GL    R+       +EM  +  +  EV+ + L   F
Sbjct: 65  LLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGF 124

Query: 441 YNESR--SMRDIFDSLER 456
             +    + +D+FD + R
Sbjct: 125 CKKKDLVAAKDVFDKMVR 142


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 165/378 (43%), Gaps = 41/378 (10%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G +++ Y  N+M++ L KN + E   + +  M+E GV   + T+ ++ ++YC  G  +EA
Sbjct: 92  GVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEA 151

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
               D MS  G++  V   N++++ +C+   +  RA   L+ + KI + PD  ++ ILL 
Sbjct: 152 FELMDSMSGKGLKPCVFTYNAIINGLCKT-GKYLRAKGVLDEMLKIGMSPDTATYNILLV 210

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              +  N+ +A + F EM    +     ++++   +  L +   +D+ALK+ R MK    
Sbjct: 211 ECCRNDNMMDAERIFDEMPS--QGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGL 268

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    ++  +    +    + A+++ D M+   G   D +TYN I   L K K + E +
Sbjct: 269 APDNVIYTILIGGFCRNGVMSEALKVRDEMLE-QGCVLDVVTYNTILNGLCKEKMLSEAD 327

Query: 346 KFFHE-----------------------------------MIKNEWQPTPLNCATAITML 370
           + F E                                   MI+   +P  +   T I   
Sbjct: 328 ELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGF 387

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
               E E   E+WN ++   I P   S   L+ G  N+G +S+  R  +EM+ +      
Sbjct: 388 CKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATI 447

Query: 431 VTMHKLKKAFYNESRSMR 448
           +T + + K +     +++
Sbjct: 448 ITCNTIVKGYCRAGNAVK 465



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 147/337 (43%), Gaps = 14/337 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFDVM 173
           +++ ++ +L KNG  +Q     R MK  G+       +I    +C  G   EA+   D M
Sbjct: 239 SFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEM 298

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   DVV  N++L+ +C+++  +     F    ++ V PD  +F  L+ G+ K+GN+
Sbjct: 299 LEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNM 358

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A   F  M++R    P+ V+ Y T +    +G ++++  +    M     +P    + 
Sbjct: 359 NKAVTLFEMMIQR-NLKPD-VVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYG 416

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             ++    +   + A +LWD  MV  G     +T N I +   +     + ++F   M+ 
Sbjct: 417 ILINGYCNMGCVSEAFRLWD-EMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLL 475

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               P  +   T I   +  +  + A  + N +  +G+LP   + N +L G    GR+ +
Sbjct: 476 KGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQE 535

Query: 414 VRRFAEEMLNRRI----------LIYEVTMHKLKKAF 440
                 +M+ R +          +   VT + LK+AF
Sbjct: 536 AELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAF 572



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 148/341 (43%), Gaps = 6/341 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G+G +   + +N +++ L K G++ +    +  M + G+     T+  +    C     
Sbjct: 159 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 218

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            +A   FD M   GV  D+V+ ++L+  + +      +AL++   +K   + PD   + I
Sbjct: 219 MDAERIFDEMPSQGVVPDLVSFSALIGLLSKN-GCLDQALKYFRDMKNAGLAPDNVIYTI 277

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+ + G + EA K   EM+E  +     V+ Y T L  L + K + EA +    M  
Sbjct: 278 LIGGFCRNGVMSEALKVRDEMLE--QGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTE 335

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
              FP    F+  ++   K  +   AV L++ MM+     PD +TYN + +   K   + 
Sbjct: 336 RGVFPDFYTFTTLINGYSKDGNMNKAVTLFE-MMIQRNLKPDVVTYNTLIDGFCKGSEME 394

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +V + +++MI     P  ++    I    +      A  +W+ ++E G      + N ++
Sbjct: 395 KVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIV 454

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
            G    G       F   ML + I+   +T + L   F  E
Sbjct: 455 KGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKE 495



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 128/290 (44%), Gaps = 8/290 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G  L    +N +++ L K     +       M E GV     TF ++ + Y   G  ++
Sbjct: 301 QGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNK 360

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILL 224
           AV  F++M    ++ DVV  N+L+   C+  ++  +  E  N  + + + P+  S+ IL+
Sbjct: 361 AVTLFEMMIQRNLKPDVVTYNTLIDGFCKG-SEMEKVNELWNDMISRRIYPNHISYGILI 419

Query: 225 EGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
            G+   G V EA + + EMVE+ FE     ++   T +    R     +A +FL  M  +
Sbjct: 420 NGYCNMGCVSEAFRLWDEMVEKGFE---ATIITCNTIVKGYCRAGNAVKADEFLSNMLLK 476

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P    ++  ++  +K  +   A  L +  M   G  PD +TYN+I     +  R+ E
Sbjct: 477 GIVPDGITYNTLINGFIKEENMDRAFALVN-KMENSGLLPDVITYNVILNGFSRQGRMQE 535

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            E    +MI+    P      + I   +  +  + A  + + +L+ G +P
Sbjct: 536 AELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 585



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/334 (19%), Positives = 136/334 (40%), Gaps = 41/334 (12%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
           +P  ++L+V    +  +  +   A RV+K  G+ +S+    S+       G  D A   +
Sbjct: 26  NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 85

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEK 229
             +   GV+ +V  +N +++A+C+ + +      FL+ + +K V PD  ++  L+  + +
Sbjct: 86  QEVVRSGVQVNVYTLNIMINALCKNQ-KIENTKSFLSDMEEKGVFPDVVTYNTLINAYCR 144

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +G +E                                     EA + +  M G+   P +
Sbjct: 145 QGLLE-------------------------------------EAFELMDSMSGKGLKPCV 167

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             ++  ++ L K      A  + D M+   G  PD+ TYN++     +N  + + E+ F 
Sbjct: 168 FTYNAIINGLCKTGKYLRAKGVLDEMLKI-GMSPDTATYNILLVECCRNDNMMDAERIFD 226

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM      P  ++ +  I +L      + A++ +  +   G+ P       L+ G    G
Sbjct: 227 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNG 286

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
            +S+  +  +EML +  ++  VT + +      E
Sbjct: 287 VMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKE 320


>gi|15232517|ref|NP_188138.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273407|sp|Q9LIL5.1|PP233_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15200
 gi|11994509|dbj|BAB02574.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642110|gb|AEE75631.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 185/426 (43%), Gaps = 44/426 (10%)

Query: 39  RFPTHLDAPYISSSARIICEILAH---ASSDDIESALACTGIIPTPDLVHEVLQLSYD-- 93
           +FP   +      SA  +  I+ H   +S + I+  L   GI  T +LV EV+  +    
Sbjct: 64  KFPNRFNDDKDKQSALDVHNIIKHHRGSSPEKIKRILDKCGIDLTEELVLEVVNRNRSDW 123

Query: 94  SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFAS 152
            P+  +            S   +N ++DVLGK  RFE+       M K DG ++  T+  
Sbjct: 124 KPAYILSQLVVKQSVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEMSKRDGFVNEKTYEV 183

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + + Y  A K DEAV  F+     G++ D+VA + LL  +CR ++       F +R ++ 
Sbjct: 184 LLNRYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREF 243

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
              D  +  ++L GW   GNV EA + + +++   +  P+ V++Y T +  L +  ++ +
Sbjct: 244 -GCDIKAMNMILNGWCVLGNVHEAKRFWKDIIAS-KCRPD-VVSYGTMINALTKKGKLGK 300

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A++  R M      P +K  +N +D L        A++++   +   G  P+ +TYN + 
Sbjct: 301 AMELYRAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFR-EISEKGPDPNVVTYNSLL 359

Query: 333 ECLIKNKRVHEVEKFFHE----------------------------------MIKNEWQP 358
           + L K +R  +V +   E                                  M KN+ + 
Sbjct: 360 KHLCKIRRTEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNKCEM 419

Query: 359 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 418
           T         + +  D+ E   EIW+ +  +G+ P + +    + GL   G++ +   + 
Sbjct: 420 TSDLYNLMFRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYF 479

Query: 419 EEMLNR 424
           +EM+++
Sbjct: 480 QEMMSK 485


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 136/283 (48%), Gaps = 12/283 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++ L K  R       +  MKE GV   L TF ++   YC  G +++A+  FD + 
Sbjct: 370 YNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLL 429

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
              +  DVVA NSL+  +CR+    ++A E  + +  + + P+  +++IL++   ++G V
Sbjct: 430 HQRLRPDVVAYNSLIDGMCRK-GDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQV 488

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           EEA     EMV +   N  +++ Y + +    R   V +  +FL+ M  +N  P L  F+
Sbjct: 489 EEAFGFLDEMVSK--GNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFN 546

Query: 294 NALDILVKLNDSTHAVQLWDIM---MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
             +   +K  +   A  +++IM   MV     PD++TYNMI     +   + E  + F +
Sbjct: 547 TLIHGYIKEENMHGAFNVFNIMEKEMV----QPDAVTYNMIINGFSEQGNMEEAGRVFKK 602

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           M  +  +P      + I   + A   + A ++ + ++  G  P
Sbjct: 603 MGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAP 645



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 139/331 (41%), Gaps = 40/331 (12%)

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDE-------------------------------- 165
           V+  D  ++  T   +  SYC + ++D+                                
Sbjct: 148 VLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGD 207

Query: 166 ---AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFA 221
              A+   D M+  G++  +V  NS+L  +C+   +  +A E    + +  V PD  SF 
Sbjct: 208 VDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHR-RFDKAKEVFRAMDQCSVAPDVRSFN 266

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           IL+ G+ + G VEEA K + EM +R    P+ V+++   +       ++D A  +LR MK
Sbjct: 267 ILIGGFCRVGEVEEAMKFYKEMQQR-GVTPD-VVSFSCLIGLFSTRGKMDHAAAYLREMK 324

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
           G    P    ++  +    +    + A+++ D  MV  G  PD +TYN +   L K  R+
Sbjct: 325 GLGLVPDGVIYTMVIGGFCRAGSMSEALRVRD-EMVGLGCLPDVVTYNTLLNGLCKQHRL 383

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            + E+  +EM +    P      T I         E A+++++ +L   + P   + N L
Sbjct: 384 LDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSL 443

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
           + G+   G L+      ++M  R I    VT
Sbjct: 444 IDGMCRKGDLAKANELWDDMHAREIFPNHVT 474



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 161/356 (45%), Gaps = 8/356 (2%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           A +G +     +N ++  L K+ RF++     R M +  V   + +F  +   +C  G+ 
Sbjct: 219 ANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEV 278

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
           +EA+  +  M   GV  DVV+ + L+  +     +   A  +L  +K + + PDG  + +
Sbjct: 279 EEAMKFYKEMQQRGVTPDVVSFSCLI-GLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTM 337

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           ++ G+ + G++ EA +   EMV      P+ V+ Y T L  L +  ++ +A + L  MK 
Sbjct: 338 VIGGFCRAGSMSEALRVRDEMVG-LGCLPD-VVTYNTLLNGLCKQHRLLDAEELLNEMKE 395

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
               P L  F+  +    +  +   A+QL+D ++      PD + YN + + + +   + 
Sbjct: 396 RGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLL-HQRLRPDVVAYNSLIDGMCRKGDLA 454

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +  + + +M   E  P  +  +  I    +  + E A    + ++  G LP   + N ++
Sbjct: 455 KANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSII 514

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES--RSMRDIFDSLER 456
            G    G +   ++F ++M+   IL   +T + L   +  E       ++F+ +E+
Sbjct: 515 KGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEK 570



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 130/307 (42%), Gaps = 7/307 (2%)

Query: 122 VLGKNGRFEQMWNAVRVMKE-DGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           V+G   R   M  A+RV  E  G+  LP   T+ ++ +  C   +  +A    + M   G
Sbjct: 338 VIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERG 397

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           V  D+    +L+   CR  N       F   + + + PD  ++  L++G  ++G++ +AN
Sbjct: 398 VTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKAN 457

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           + + +M  R E  P HV  Y   + +     QV+EA  FL  M  +   P +  +++ + 
Sbjct: 458 ELWDDMHAR-EIFPNHV-TYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIK 515

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
              +  +     Q    MM      PD +T+N +    IK + +H     F+ M K   Q
Sbjct: 516 GYCRSGNVKKGQQFLQKMMQ-DNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQ 574

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
           P  +     I    +    E A  ++  +  +GI P   +   L+ G    G   +  + 
Sbjct: 575 PDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQL 634

Query: 418 AEEMLNR 424
            +EM++R
Sbjct: 635 HDEMMHR 641


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 131/294 (44%), Gaps = 7/294 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF +I  S C  G  D A+   D MS HG   D+V  +S+L  +C    +   A+E L+R
Sbjct: 304 TFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLC-DVGRVDDAVELLSR 362

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K     PD  ++  +L+G       E A +   EMV   +  P+ V  + T + +L + 
Sbjct: 363 LKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCS-DCPPDEV-TFNTVIASLCQK 420

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
             VD A+K +  M    C P +  +++ +D L        A++L   +  + G  PD +T
Sbjct: 421 GLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSY-GCKPDIVT 479

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           +N + + L    R  + E+    M+ ++  P      T IT L        AIE    + 
Sbjct: 480 FNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMA 539

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR--ILIYEVTMHKLKKA 439
           ENG +P +++ N ++  L   G+  +  +    M N    ++ Y   +  + KA
Sbjct: 540 ENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGTPDLITYNTVISNITKA 593



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 131/296 (44%), Gaps = 6/296 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N ++  L   GR          M   G   S+ T++ + D+ C A  Y +A++  D 
Sbjct: 163 FTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDE 222

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M   G E D+V  N L++A+C  E     AL  L+ +      PD  ++  +L+      
Sbjct: 223 MRAKGCEPDIVTYNVLINAMC-NEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSE 281

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             +E  + F EM    +  P+ V  + T + +L +   VD A+K +  M    C P +  
Sbjct: 282 RWKEVEELFAEMASN-KCAPDEV-TFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVT 339

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S+ LD L  +     AV+L   +  + G  PD++ Y  + + L   ++    E+   EM
Sbjct: 340 YSSILDGLCDVGRVDDAVELLSRLKSY-GCKPDTIAYTTVLKGLCSIEQWEHAEELMAEM 398

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           + ++  P  +   T I  L      + AI++   + ENG  P   + N ++ GL N
Sbjct: 399 VCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCN 454



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 124/267 (46%), Gaps = 13/267 (4%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
           C  G+  +A   F  +   G    VV  N++++  CR   +   A   ++ +     PD 
Sbjct: 109 CSGGRVADAERVFATL---GASATVVTYNTMVNGYCRA-GRIEDARRLISGMP--FPPDT 162

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +F  L+      G V +A   F +M+ R   +P  V+ Y   L    +     +A+  L
Sbjct: 163 FTFNPLIRALCVRGRVPDALAVFDDMLHR-GCSPS-VVTYSILLDATCKASGYRQAMVLL 220

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M+ + C P +  ++  ++ +    D   A+ +   +   HG  PD++TY  + + L  
Sbjct: 221 DEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDL-PSHGCKPDAVTYTPVLKSLCG 279

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
           ++R  EVE+ F EM  N+  P  +   T +T L      + AI++ +++ E+G +P   +
Sbjct: 280 SERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVT 339

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNR 424
            + +L GL ++GR+ D    A E+L+R
Sbjct: 340 YSSILDGLCDVGRVDD----AVELLSR 362



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 120/281 (42%), Gaps = 11/281 (3%)

Query: 129 FEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
            EQ  +A  +M E      P    TF ++  S C  G  D A+   + MS +G   D+V 
Sbjct: 385 IEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVT 444

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
            NS++  +C  E     A+E L+ ++     PD  +F  LL+G       E+A +    M
Sbjct: 445 YNSIIDGLC-NERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNM 503

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           +      P     + T + +L +   + +A++ L++M    C P    ++  +D L+K  
Sbjct: 504 MH--SDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAG 561

Query: 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
            +  A++L   M       PD +TYN +   + K  ++ E       M+ N   P  +  
Sbjct: 562 KTQEALKLLSGMT---NGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITY 618

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            +    +   D  + AI +   + + G+ P     N++L+G
Sbjct: 619 RSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLG 659



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 10/154 (6%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +N++VD L K G+ ++    +  M  +G   L T+ ++  +   AGK +EA+    VM  
Sbjct: 550 YNIVVDALLKAGKTQEALKLLSGMT-NGTPDLITYNTVISNITKAGKMEEALDLLRVMVS 608

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVE 234
           +G+  D +   SL   ICR E+ T RA+  L R++ + + PD   +  +L G+ +    +
Sbjct: 609 NGLSPDTITYRSLAYGICR-EDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTD 667

Query: 235 EANKTFGEMVERFEWNPE-------HVLAYETFL 261
            A   F  MV       E         LAYE  L
Sbjct: 668 IAIDCFAHMVSSGCMPDESTYIILLEALAYECLL 701


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 139/299 (46%), Gaps = 7/299 (2%)

Query: 110 RLSPYAWNL--MVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           ++ P A +L  +VD L K G   Q  + V +M + GV   + T+ ++ D +C   + DEA
Sbjct: 279 KIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEA 338

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           V  FD+M   G   +V + N+L++  C+ E        F    ++ + P+  ++  L+ G
Sbjct: 339 VKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHG 398

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
               G +++A   F EMV   +  P+ ++ Y   L  L +   +D+A+  L+ ++G N  
Sbjct: 399 LCHVGRLQDAIALFREMVACGQI-PD-LVTYRILLDYLCKNCHLDKAMALLKAIEGSNLD 456

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P ++ ++  +D + +  +   A  L+   +   G  P+  TYN++   L K   + E  K
Sbjct: 457 PDIQIYTIVIDGMCRAGELEDARDLFS-NLSSKGLKPNVWTYNIMTHGLCKRGLLDEATK 515

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
            F EM +N          T     L  +E   AI++   +L  G    + S   LLVG+
Sbjct: 516 LFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARG-FSCDVSTTTLLVGM 573



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 136/337 (40%), Gaps = 42/337 (12%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  FA I  S     +Y   +     M   G+  +V  +N L+++ C   N+ + A   
Sbjct: 73  SIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHL-NRVNFAFSV 131

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLIT 263
           L ++ K+   PD  SF  L++G   EG + EA   F +M+ E F+  P+ V+ Y T +  
Sbjct: 132 LAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQ--PD-VVIYATLING 188

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L +      A++ LR M+  NC P +  +   +  L K    T A  L+   M+  G  P
Sbjct: 189 LCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFS-EMITKGISP 247

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI---------------- 367
           + +T N +   L        V    +EM+ ++  P  ++  T +                
Sbjct: 248 NIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVV 307

Query: 368 -TMLLDADEPEI------------------AIEIWNYILENGILPLEASANELLVGLRNL 408
             M     EP++                  A+++++ ++  G  P   S N L+ G   +
Sbjct: 308 DMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKI 367

Query: 409 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            R+       EEM  ++++   VT + L     +  R
Sbjct: 368 ERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGR 404



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 126/311 (40%), Gaps = 6/311 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  N++++      R    ++ + +++K        +F ++    C  G+  EA+  FD 
Sbjct: 110 YTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDK 169

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   G + DVV   +L++ +C+    TS A+  L  ++K    PD   +  L+    K+ 
Sbjct: 170 MIWEGFQPDVVIYATLINGLCKT-GHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDR 228

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
              +A   F EM+ +   +P +++   + +  L    +       L  M      P    
Sbjct: 229 QQTQAFNLFSEMITK-GISP-NIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAIS 286

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
            +  +D L K      A  + D MM   G  PD +TY  + +       + E  K F  M
Sbjct: 287 LTTVVDALCKEGMVAQAHDVVD-MMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMM 345

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +     P   +  T I      +  + A+ ++  +    ++P   + N L+ GL ++GRL
Sbjct: 346 VHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRL 405

Query: 412 SDVRRFAEEML 422
            D      EM+
Sbjct: 406 QDAIALFREMV 416


>gi|224123678|ref|XP_002319139.1| predicted protein [Populus trichocarpa]
 gi|222857515|gb|EEE95062.1| predicted protein [Populus trichocarpa]
          Length = 518

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 108/456 (23%), Positives = 188/456 (41%), Gaps = 53/456 (11%)

Query: 53  ARIICEILAHASSDDIE--SALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--G 108
           A+ I  IL  +  + +E  S +   GI  + +LV EVL    +   +A  FF WA R  G
Sbjct: 25  AKTIVNILQESCDNRVEMKSKIEQCGIKVSQELVLEVLSRVRNDWEAAFTFFLWAARQPG 84

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMW---NAVRVMKEDGVLSLP-TFASIFDSYCGAGKYD 164
              S   ++ M+ +LGK  +F+  W   + +R +K    L  P T   +   YC      
Sbjct: 85  YAHSVREYHSMISILGKMRKFDTAWVLIDEMRGVKTGVSLVTPQTLLIMIRKYCAVHDVG 144

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAIL 223
            A+ +F        +  +    SLLSA+CR +N Q +  L + N  K +   +  SF I+
Sbjct: 145 RAINTFYAYKRFKFDMGIEEFQSLLSALCRYKNVQDAEQLMYCN--KAVFPLNTKSFNIV 202

Query: 224 LEGW-EKEGNVEEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           L GW    G+  E+ + + EM +R   F+     V++Y + +    +   +   L+  + 
Sbjct: 203 LNGWCNLIGSPRESERVWREMSKRGIRFD-----VVSYASMMSCYSKAGSLYRVLRLYKQ 257

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           MK     P  K ++  +  L K      A  L   M    G  P+ +TYN + + L + +
Sbjct: 258 MKKIGIEPDRKVYNAVIHALAKGRLVNEAFNLMKTMEE-KGVAPNIVTYNSLIKPLCRAR 316

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP----------------------- 376
           +V E +  F +M+K    PT       + +L   +E                        
Sbjct: 317 KVEEAKGAFDDMLKRCISPTIRTYHAFLRILRTGEEVFALLEKMRKMGCQPINDTYIMLI 376

Query: 377 ---------EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
                    E   ++W+ + ENGI P  +S   L+ GL   G L    ++  EM  +++L
Sbjct: 377 RKFCRWRQLENVFKLWDEMSENGISPDRSSYIVLIHGLFLNGELDAAHKYYTEMKEKQLL 436

Query: 428 IYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 463
                   L+    N+  +     +S   +C+T+++
Sbjct: 437 PEPKIDEMLQTWLSNKQIAEGQTTESRSNQCQTTEL 472


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 154/359 (42%), Gaps = 13/359 (3%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL----PTFASIFDSYCGAGKYDEA 166
           L+  AW   +  L K+G+ EQ + A R M+E    S      T  S+    C AG+ D A
Sbjct: 9   LNNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSA 68

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS---FAIL 223
           +   + M   G   D+   + L++ +C+  ++   A EFL  + + +     S   +  L
Sbjct: 69  LSLLETMIKRGYCPDMATHSMLINELCKA-DKIQEAQEFLQGMNRTISTRASSCFSYNSL 127

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           L    K   V +A   F  MV      P+ V++Y   +    +  ++  A K  + M   
Sbjct: 128 LNSLCKAKKVHQAFAIFSTMVSERSVVPD-VVSYSILIDGFCKIDELGRAEKLYKQMIDL 186

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
           NC P +  ++  L+ L++      A  +++  M+  G  PD +TY+ +       ++  +
Sbjct: 187 NCVPNVTTYNAFLNGLMRKGRIADAQGVYE-EMISAGCSPDVITYSTLIHGFSLARKHDQ 245

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
             + F  MI    +P  +     +  L    +P+ A E++  ++E G  P + +   LL 
Sbjct: 246 AHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLY 305

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL-ERRCK 459
           G  N+G++       +EM+++      V  + L K F+   +    R +F  +  R CK
Sbjct: 306 GFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECK 364



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 7/259 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  ++ L + GR          M   G    + T++++   +  A K+D+A   F+ M 
Sbjct: 195 YNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMI 254

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   + V  N LL  +C++         F   V++  DPD  ++  LL G+   G +E
Sbjct: 255 SRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIE 314

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A + F EMV +   +P+ V+AY   L    R  +  EA +  +VM    C P     + 
Sbjct: 315 QAVEVFDEMVSK-GHDPD-VVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNI 372

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +D L K      AV++++ M   HG  PD +TYN +   L   +R+ E  K F E+ + 
Sbjct: 373 MIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRL 432

Query: 355 EWQPTPLNCATAITMLLDA 373
           +  P P     A  +LL+A
Sbjct: 433 KLSPDP----HAFNVLLEA 447



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 13/143 (9%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVL---GKNGRFEQMWNAV--RVMKEDGVLSLPTFA 151
           AV+ F     +G      A+N ++      GK G   Q++  +  R  K D V    +  
Sbjct: 316 AVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTV----SHN 371

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSM-HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            + D    A + D+AV  F+ M   HG   D+V  NSL+  +C  E + S A++    + 
Sbjct: 372 IMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLC-GEQRLSEAMKVFKEID 430

Query: 211 KI-VDPDGDSFAILLEGWEKEGN 232
           ++ + PD  +F +LLE     G+
Sbjct: 431 RLKLSPDPHAFNVLLEAMYAAGH 453


>gi|449457341|ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
 gi|449523938|ref|XP_004168980.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
          Length = 506

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 187/467 (40%), Gaps = 66/467 (14%)

Query: 50  SSSARIICEILAHASS--DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR 107
           S  A ++ +IL H  +    +ES+L    I  +  L+ + L         A+ FF +A  
Sbjct: 35  SKDADLVSQILLHHHNPFHSMESSLQLHSISFSSHLLDQTLLRLTHHSKIALSFFDYANS 94

Query: 108 --GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
                +S  ++N+++D+L K  +F+  W+ +  M   G     TF  +      +G+  +
Sbjct: 95  LPSNPISTTSYNILLDILAKVRQFDAAWHLILQMDHKGT---DTFLLLIRRLISSGRTRQ 151

Query: 166 AVMSFDVMSMHGVEQDVVAVNS---LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           A+ +FD   + G+  + V ++    LL  +C+       A+E  N+ K+    D   + I
Sbjct: 152 AIRAFD--DIEGLTGNKVGIDDFCYLLDVLCKY-GYVKVAVEVFNKRKEEFGVDVKIYTI 208

Query: 223 LLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRG----------KQVD 271
           L+ GW K G  E A +   +MVER  E N   V+ Y   L  + R           K + 
Sbjct: 209 LIYGWCKIGRFEMAERFLKDMVERGIEPN---VVTYNVLLNGVCRRASLHPEGRFEKTIR 265

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
            A K    M+     P +  FS  L +  + +    ++     M    G  P   TY  +
Sbjct: 266 HAEKVFDEMRKRGIEPDVTSFSIVLHVYSRAHKPELSLDKLKQMKEL-GISPTVATYTSV 324

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLN----------------------------- 362
            +CL    R+ + E    EM+++   P+P                               
Sbjct: 325 IKCLCSCGRLEDGENLIEEMVRSGISPSPTTYNCFFKEYRGRKDGAGALRLYKKMREDCL 384

Query: 363 CATA-------ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
           CA +       + + L+ D+ E   E+WN + E+G+ P   S   ++ GL    R S+  
Sbjct: 385 CAPSLHTYNILLALFLNLDKKETLKELWNDMKESGVGPDLDSYTTIIHGLCEKQRWSEAC 444

Query: 416 RFAEEMLNRRILIYEVTMHKLKKAFYNES--RSMRDIFDSLERRCKT 460
           +F  EM+ R  L  +VT   L +        R+ R +   LE   KT
Sbjct: 445 QFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWRRLKKKLEEESKT 491


>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 737

 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 173/404 (42%), Gaps = 43/404 (10%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P  V  VLQL  D    A+DFF WAGR  R    P  + +M+ VL K    +     +R+
Sbjct: 103 PRQVCAVLQLQSDE-RIALDFFYWAGRQWRYRHDPIVYYMMLQVLSKTKLCQGARRVLRL 161

Query: 139 MKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M   G+   P  FA +  SY  AGK   A+    +M   GVE +++  N+ +  +    N
Sbjct: 162 MVRRGIARRPEAFAHVMVSYSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLV-MAN 220

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +  +AL FL R++ + + P+  ++  L++G+     VE A +   EM   F+  P   ++
Sbjct: 221 KLEKALRFLERMQLVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEM--PFKGCPPDKVS 278

Query: 257 YETFLITLIRGKQVDEALKFL-RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW--- 312
           Y T +  L + K++ E    + +++K    FP    ++  + +L K   +  A++     
Sbjct: 279 YYTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRET 338

Query: 313 -----------------------------DIM--MVFHGAFPDSLTYNMIFECLIKNKRV 341
                                        +I+  M+  G  PD +TY  +   L K  +V
Sbjct: 339 EERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKV 398

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E +K   +M K+  +P  ++    +  L        A E+ N   E+   P   + + +
Sbjct: 399 EEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVV 458

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           + GLR  G+LS+      EML +      V ++ L K+   E +
Sbjct: 459 MHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQK 502



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/330 (20%), Positives = 133/330 (40%), Gaps = 45/330 (13%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +V +L K+G  ++    +R  +E G  +    +++I +S+C  G+ D A    + M
Sbjct: 314 TYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEM 373

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G   DVV   ++++ +C+   +   A + L ++ K    P+  S+  LL G  + GN
Sbjct: 374 ITKGCSPDVVTYTAVVNGLCKV-GKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGN 432

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             EA +      E + W P + + Y   +  L R  ++ EA   +R              
Sbjct: 433 SLEAREMMNTSEEDW-WTP-NAITYSVVMHGLRREGKLSEACDVVR-------------- 476

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
                                  M+  G FP  +  N++ + L   ++++E +KF  E +
Sbjct: 477 ----------------------EMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECL 514

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                   +N  T I     +D  + A+ + + +  N   P   +   ++  L   GR+ 
Sbjct: 515 NRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIE 574

Query: 413 DVRRFAEEMLNRRI----LIYEVTMHKLKK 438
           +   +  +ML + +    + Y   +H+  K
Sbjct: 575 EATVYTMKMLKKGLDPTPVTYRAVIHQYCK 604



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 10/157 (6%)

Query: 96  SSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-----LSLPT 149
           S A D  R    +G   +P   NL++  L      EQ  N  +   E+ +     ++   
Sbjct: 469 SEACDVVREMLTKGFFPTPVEINLLIKSLC----LEQKMNEAKKFMEECLNRGCAVNAVN 524

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F ++   +C +   D A+   D M ++    D V   +++ A+ ++       +  +  +
Sbjct: 525 FTTVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKML 584

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           KK +DP   ++  ++  + K G VEE  K  G+M+ R
Sbjct: 585 KKGLDPTPVTYRAVIHQYCKMGRVEELIKLLGKMLSR 621


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 145/308 (47%), Gaps = 4/308 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +VD L K G+  +  + V +M + GV  ++ T+ ++ D +C   + DEAV  FD M 
Sbjct: 281 FSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMV 340

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   DVV+ ++L++  C+ +        F    +K + P+  +++ L+ G    G ++
Sbjct: 341 CKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQ 400

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A   F EMV R +  P+ V +Y   L  L + +++DEA+  L+ ++G N  P ++ ++ 
Sbjct: 401 DAIALFHEMVTRGQI-PDFV-SYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTI 458

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +D + +  +   A  L+   +   G  P+  TY ++   L +   + E  K F EM + 
Sbjct: 459 VIDGMCRAGELEAARDLFS-NLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRK 517

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
            + P            L  +E    I++   +L  G     +++  L+  L + G    V
Sbjct: 518 GYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQSV 577

Query: 415 RRFAEEML 422
           ++   E L
Sbjct: 578 KQILSEFL 585



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 135/313 (43%), Gaps = 6/313 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  N++++      R    ++ + +++K     ++ TF ++    C  GK  E +  FD 
Sbjct: 104 YTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDK 163

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   G + +VV   +L++ +C+    TS A+  L  +++    PD   +  +++   K+ 
Sbjct: 164 MIGEGFQPNVVTYGTLINGLCKV-GSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDR 222

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V +A   F EM+ +   +P  +  Y + +  L    +       L  M      P +  
Sbjct: 223 QVTQAFNLFSEMIHQ-GISPS-IFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVI 280

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           FS  +D L K      A  + D MM+  G  P+ +TYN + +       + E  K F  M
Sbjct: 281 FSTVVDALCKEGKVMEAHDVVD-MMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTM 339

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +   + P  ++ +T I         E A+ ++  +    ++P   + + L+ GL ++GRL
Sbjct: 340 VCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRL 399

Query: 412 SDVRRFAEEMLNR 424
            D      EM+ R
Sbjct: 400 QDAIALFHEMVTR 412



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/283 (19%), Positives = 108/283 (38%), Gaps = 42/283 (14%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  S      Y   +     M   G+  ++  +N L+++ C  + +   A   
Sbjct: 67  SIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQ-RLGFAFSV 125

Query: 206 LNRVKKIV-DPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLIT 263
           L ++ K+   P+  +F  L+ G   EG + E    F +M+ E F+ N   V+ Y T +  
Sbjct: 126 LAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPN---VVTYGTLING 182

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L +      A++ LR M+  NC P                                    
Sbjct: 183 LCKVGSTSAAIRLLRSMEQGNCQP------------------------------------ 206

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D + Y  I + L K+++V +    F EMI     P+     + I  L +  E +    + 
Sbjct: 207 DVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALL 266

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           N ++ + I+P     + ++  L   G++ +     + M+ R +
Sbjct: 267 NEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGV 309



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 76/201 (37%), Gaps = 42/201 (20%)

Query: 263 TLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
           TLIRG     ++ E L     M GE   P +  +   ++ L K+  ++ A++L   M   
Sbjct: 143 TLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQG 202

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
           +   PD + Y  I + L K+++V +    F EMI     P+                   
Sbjct: 203 NCQ-PDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPS------------------- 242

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
              I+ Y             N L+  L NL     V     EM+N +I+   V    +  
Sbjct: 243 ---IFTY-------------NSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVD 286

Query: 439 AFYNESRSM--RDIFDSLERR 457
           A   E + M   D+ D + +R
Sbjct: 287 ALCKEGKVMEAHDVVDMMIKR 307


>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 790

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 159/386 (41%), Gaps = 43/386 (11%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRV 138
           P LV  VL+ S D    A+DFF WA R  R    A  +  M+D+L K    +     +R+
Sbjct: 164 PRLVCAVLR-SQDDERIALDFFYWADRQWRYRHDAIVYYTMLDILSKTRLCQGARRILRL 222

Query: 139 MKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M   G+   P  F+ +  SY  AG    A+    +M   GVE D+   N+ +  + +  N
Sbjct: 223 MTRRGIERSPEAFSYVMVSYSRAGMLRNALRILTLMQKAGVEPDLSICNTAIYVLVKG-N 281

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGW----------------------------- 227
           +  +AL FL R+K   ++PD  S+  L++G+                             
Sbjct: 282 KLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEMPFKGCPPDKVSYY 341

Query: 228 ------EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
                  K+  VEE  +    MV+     P+ V  Y T +  L +    D+AL FLR  +
Sbjct: 342 TVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQV-TYNTLIYALSKHGHADDALVFLREAE 400

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            +        +S  +D   K N +    +   I M   G  PD +TY  I +   +  ++
Sbjct: 401 EKGFHIDKVGYSAVVDSFCK-NKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKI 459

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E +K   +M K+  +P  +     +  L    +   A E+ N   E+   P   + + +
Sbjct: 460 DEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAV 519

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRIL 427
           + GLR  G+LS+      EM+ +  L
Sbjct: 520 MHGLRREGKLSEACDLTREMIEKGFL 545



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 124/268 (46%), Gaps = 9/268 (3%)

Query: 98  AVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFD 155
           A+ F R A  +G  +    ++ +VD   KN   ++  + V  M   G    + T+ +I D
Sbjct: 392 ALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIID 451

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-D 214
            +C  GK DEA      M  HG + + V    LL+ +C    ++  A E +N  ++    
Sbjct: 452 GFCRVGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLC-HNGKSLEAREMINVSEEHWWT 510

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEA 273
           P+  +++ ++ G  +EG + EA     EM+E+ F  NP  +      + +L R + V  A
Sbjct: 511 PNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVDI---NLLIQSLCRNQNVVGA 567

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
            K+L     + C   +  F++ +    ++ D   A+ + + M +     PD++TY  +F+
Sbjct: 568 KKYLEECLHKGCAVNVVNFTSVIYGFCQIGDLDAALSMLEDMYL-SNKHPDAITYTTLFD 626

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
            L K  R+ E  +   +M+     PTP+
Sbjct: 627 ALGKKSRLDEASELIVKMLGKGIDPTPV 654


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 133/289 (46%), Gaps = 5/289 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +VD L K G+  +    V +M + GV   + T+ ++ D +C   + DEAV  FD+M 
Sbjct: 269 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV 328

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   DV++  +L++  C+          F    +K   PD  ++  L+ G    G ++
Sbjct: 329 RKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQ 388

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A   F EMV R +  P+ ++ Y   L +L +   ++EA+  L+ ++  N  P ++ ++ 
Sbjct: 389 DAIALFHEMVARGQM-PD-LVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNI 446

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +D + +  +   A  L+   +   G  P   TYN++   L K   ++E  K F EM  N
Sbjct: 447 IIDGMCRAGELEAARDLFS-NLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGN 505

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
           +  P      T     L  +E   AI++   +L  G    + S   LLV
Sbjct: 506 DCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARG-FSADVSTTTLLV 553



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 132/300 (44%), Gaps = 9/300 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++    C  GK  EA+  FD M   G + +VV   +L++ +C+  N TS A+  L  
Sbjct: 128 TFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGN-TSAAIRLLRS 186

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +++    PD   +  +++   K+  V EA   F +MV +   +P+ +  Y + +  L   
Sbjct: 187 MEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQ-GISPD-IFTYTSLVHALCNL 244

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +       L  M      P +  FS  +D L K    T A ++ D MM+  G  PD +T
Sbjct: 245 CEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVD-MMIQRGVEPDVVT 303

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y  + +       + E  K F  M++  + P  ++  T I       + + A+ ++  + 
Sbjct: 304 YTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMC 363

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNE 443
               +P   + N L+ GL ++GRL D      EM+ R     ++ Y + +  L K  + E
Sbjct: 364 RKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLE 423



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 135/308 (43%), Gaps = 17/308 (5%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  FA +  S      Y   +     M   GV  +V  +N L+++ C   N+   A   
Sbjct: 55  SIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHL-NRVGFAFSV 113

Query: 206 LNRVKKIV-DPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLIT 263
           L ++ K+   PD  +F  L+ G   EG + EA   F +M+ E F+ N   V+ Y T +  
Sbjct: 114 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPN---VVTYGTLING 170

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L +      A++ LR M+  NC P +  +++ +D L K    T A  L+   MV  G  P
Sbjct: 171 LCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFS-QMVGQGISP 229

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D  TY  +   L        V    ++M+ ++  P  +  +T +  L    +   A EI 
Sbjct: 230 DIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIV 289

Query: 384 NYILENGILPLEASANELLVG------LRNLGRLSDV---RRFAEEMLNRRILIYE-VTM 433
           + +++ G+ P   +   L+ G      +    ++ D+   + FA ++++   LI     +
Sbjct: 290 DMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKI 349

Query: 434 HKLKKAFY 441
           HK+ KA Y
Sbjct: 350 HKIDKAMY 357



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 144/340 (42%), Gaps = 11/340 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  +++ L K G        +R M++      +  + SI DS C   +  EA   F  M
Sbjct: 163 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 222

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
              G+  D+    SL+ A+C    +       LN+ V   + PD   F+ +++   KEG 
Sbjct: 223 VGQGISPDIFTYTSLVHALCNL-CEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGK 281

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V EA++    M++R    P+ V+ Y T +       ++DEA+K   +M  +   P +  +
Sbjct: 282 VTEAHEIVDMMIQR-GVEPD-VVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISY 339

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  ++   K++    A+ L++  M      PD+ TYN +   L    R+ +    FHEM+
Sbjct: 340 TTLINGYCKIHKIDKAMYLFE-EMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMV 398

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P  +  +  +  L      E A+ +   I  + + P     N ++ G+   G L 
Sbjct: 399 ARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELE 458

Query: 413 DVR----RFAEEMLNRRILIYEVTMHKL-KKAFYNESRSM 447
             R      + + L+  +  Y + +H L K+   NE+  +
Sbjct: 459 AARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKL 498


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 133/279 (47%), Gaps = 5/279 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T  ++ +  C  G+  EA++  D M  +G E + +    +L+ +C+  N T+ AL+   +
Sbjct: 176 TVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGN-TALALDLFRK 234

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++ + +      ++I+++   K+GN+++A   F EM    +     V+AY + +  L   
Sbjct: 235 MEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEM--EMKGIKADVVAYSSIIGGLCND 292

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            + D+  K LR M G N  P +  FS  +D+ VK      A +L++  MV  G  PD++T
Sbjct: 293 GRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYN-EMVARGIAPDTIT 351

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y+ + +   K  R+ E  +    M+    +P  +  +  I     A   +  + ++  I 
Sbjct: 352 YSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEIS 411

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
             G++    + N L+ G    G+L+  +   +EM++R +
Sbjct: 412 SKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGV 450



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 149/312 (47%), Gaps = 4/312 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           R    G   +   +  +++ + K+G      +  R M+E  +  S+  ++ + DS C  G
Sbjct: 199 RMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDG 258

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D+A+  F+ M M G++ DVVA +S++  +C        A      + + + P+  +F+
Sbjct: 259 NLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFS 318

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++ + KEG + EA + + EMV R    P+ +  Y + +    +  ++ EA + L +M 
Sbjct: 319 ALIDVFVKEGKLLEAKELYNEMVAR-GIAPDTI-TYSSLIDGFCKENRLGEANQMLDLMV 376

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            + C P +  +S  ++   K     + ++L+   +   G   D++TYN + +   ++ ++
Sbjct: 377 SKGCEPNIVTYSILINSYCKAKRVDNGMRLF-CEISSKGLVADTVTYNTLVQGFCQSGKL 435

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
           +  ++ F EM+     P+ +     +  L D  E + A+EI+  + ++ ++      N +
Sbjct: 436 NVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNII 495

Query: 402 LVGLRNLGRLSD 413
           + G+ N  ++ D
Sbjct: 496 IHGMCNASKVDD 507



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 118/261 (45%), Gaps = 18/261 (6%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRF---EQMWN--AVRVMKEDGVLSLPTFASIFDSYCGA 160
           G+ + P    ++ ++DV  K G+    ++++N    R +  D +    T++S+ D +C  
Sbjct: 307 GRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTI----TYSSLIDGFCKE 362

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
            +  EA    D+M   G E ++V  + L+++ C+ +   +    F     K +  D  ++
Sbjct: 363 NRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTY 422

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L++G+ + G +  A + F EMV R    P  V+ Y   L  L    ++ +AL+    M
Sbjct: 423 NTLVQGFCQSGKLNVAKELFQEMVSR--GVPPSVVTYGILLDGLCDNGELQKALEIFEKM 480

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKN 338
           +       +  ++    I+  + +++     W +   +   G  PD LTYN++   L K 
Sbjct: 481 QKSRMILGIGIYN---IIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKK 537

Query: 339 KRVHEVEKFFHEMIKNEWQPT 359
             + E +  F +M ++   P+
Sbjct: 538 GSLSEADMLFRKMKEDGCAPS 558



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 137/339 (40%), Gaps = 54/339 (15%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE------NQT 199
           SL  F+ +F +     +YD  +     M ++G+E ++  +N +++  CR+       +  
Sbjct: 68  SLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVV 127

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
            RAL+F        +P+  +F+ L+ G+  EG V EA      MVE  ++ P +V+   T
Sbjct: 128 GRALKFG------FEPNTITFSTLINGFCLEGRVSEAVALVDRMVE-MKYRP-NVVTVNT 179

Query: 260 FLITLIRGKQVDEALKFL--------------------RVMKGENCFPTLKFF------- 292
            +  L    +V EAL  +                    R+ K  N    L  F       
Sbjct: 180 LINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERS 239

Query: 293 --------SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
                   S  +D L K  +   A+ L++  M   G   D + Y+ I   L  + R  + 
Sbjct: 240 IKASVVQYSIVIDSLCKDGNLDDALSLFN-EMEMKGIKADVVAYSSIIGGLCNDGRWDDG 298

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            K   EMI     P  +  +  I + +   +   A E++N ++  GI P   + + L+ G
Sbjct: 299 AKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDG 358

Query: 405 LRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKKA 439
                RL +  +  + M+++     I+ Y + ++   KA
Sbjct: 359 FCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKA 397



 Score = 42.4 bits (98), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 1/125 (0%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCG 159
           F     RG   S   + +++D L  NG  ++       M K   +L +  +  I    C 
Sbjct: 442 FQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCN 501

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           A K D+A   F  +S+ GV+ DV+  N ++  +C++ + +   + F    +    P   +
Sbjct: 502 ASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCT 561

Query: 220 FAILL 224
           + IL+
Sbjct: 562 YNILI 566



 Score = 38.5 bits (88), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 1/146 (0%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   + +G       +N +V    ++G+        + M   GV  S+ T+  + D  C 
Sbjct: 407 FCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCD 466

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G+  +A+  F+ M    +   +   N ++  +C           F +   K V PD  +
Sbjct: 467 NGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLT 526

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVE 245
           + +++ G  K+G++ EA+  F +M E
Sbjct: 527 YNVMIGGLCKKGSLSEADMLFRKMKE 552


>gi|225430658|ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial [Vitis vinifera]
 gi|296085168|emb|CBI28663.3| unnamed protein product [Vitis vinifera]
          Length = 454

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 150/345 (43%), Gaps = 9/345 (2%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVR 137
           T DLV+ VL+   +S + ++ FF WA       P    +  ++  L +  +F+ MW    
Sbjct: 75  TSDLVYRVLRSCPNSGTESLRFFNWARSHLSYQPTTLEYEELLKTLARTKQFQPMWKIAH 134

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD-VMSMHGVEQDVVAVNSLLSAICRQE 196
            M+    LS    +SI + +   G  D+AV  F+   S     Q +   NSLL A+C  +
Sbjct: 135 QMQ---TLSPTVVSSIIEEFGKHGLVDQAVEVFNKAKSALNCPQTIEVYNSLLFALCEVK 191

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
                       ++K V P+  ++++L+ GW   G ++EA + F E + R  +NP  V  
Sbjct: 192 YFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEA-QDFLEEMSRKGFNPP-VRG 249

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
            +  +  L+    ++ A + +R M  E C P ++  ++ L+ + K  ++   + +++ + 
Sbjct: 250 RDLLVDGLLNAGYLEAAKEMVRKMTKEGCAPDVETLNSMLEAICKAGEAEFCIDIYNDVC 309

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
              G  P+  TY ++     K  R+ E  +  H  I++  +P P   A  I  L    + 
Sbjct: 310 RL-GVSPNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPFPSLYAPIIKALCRNGQF 368

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           + A   ++ +   G  P       L+      GR  D   +  EM
Sbjct: 369 DDAFCFFSDMKVKGHPPNRPVYTMLITMCGRGGRFVDAANYLVEM 413


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 145/308 (47%), Gaps = 4/308 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +VD L K G+  +  + V +M + GV  ++ T+ ++ D +C   + DEAV  FD M 
Sbjct: 272 FSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMV 331

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   DVV+ ++L++  C+ +        F    +K + P+  +++ L+ G    G ++
Sbjct: 332 CKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQ 391

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A   F EMV R +  P+ V +Y   L  L + +++DEA+  L+ ++G N  P ++ ++ 
Sbjct: 392 DAIALFHEMVTRGQI-PDFV-SYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTI 449

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +D + +  +   A  L+   +   G  P+  TY ++   L +   + E  K F EM + 
Sbjct: 450 VIDGMCRAGELEAARDLFS-NLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRK 508

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
            + P            L  +E    I++   +L  G     +++  L+  L + G    V
Sbjct: 509 GYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQSV 568

Query: 415 RRFAEEML 422
           ++   E L
Sbjct: 569 KQILSEFL 576



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 135/313 (43%), Gaps = 6/313 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  N++++      R    ++ + +++K     ++ TF ++    C  GK  E +  FD 
Sbjct: 95  YTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDK 154

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   G + +VV   +L++ +C+    TS A+  L  +++    PD   +  +++   K+ 
Sbjct: 155 MIGEGFQPNVVTYGTLINGLCKV-GSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDR 213

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V +A   F EM+ +   +P  +  Y + +  L    +       L  M      P +  
Sbjct: 214 QVTQAFNLFSEMIHQ-GISPS-IFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVI 271

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           FS  +D L K      A  + D MM+  G  P+ +TYN + +       + E  K F  M
Sbjct: 272 FSTVVDALCKEGKVMEAHDVVD-MMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTM 330

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +   + P  ++ +T I         E A+ ++  +    ++P   + + L+ GL ++GRL
Sbjct: 331 VCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRL 390

Query: 412 SDVRRFAEEMLNR 424
            D      EM+ R
Sbjct: 391 QDAIALFHEMVTR 403



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/283 (19%), Positives = 108/283 (38%), Gaps = 42/283 (14%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  S      Y   +     M   G+  ++  +N L+++ C  + +   A   
Sbjct: 58  SIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQ-RLGFAFSV 116

Query: 206 LNRVKKIV-DPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLIT 263
           L ++ K+   P+  +F  L+ G   EG + E    F +M+ E F+ N   V+ Y T +  
Sbjct: 117 LAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPN---VVTYGTLING 173

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L +      A++ LR M+  NC P                                    
Sbjct: 174 LCKVGSTSAAIRLLRSMEQGNCQP------------------------------------ 197

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D + Y  I + L K+++V +    F EMI     P+     + I  L +  E +    + 
Sbjct: 198 DVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALL 257

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           N ++ + I+P     + ++  L   G++ +     + M+ R +
Sbjct: 258 NEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGV 300



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 76/201 (37%), Gaps = 42/201 (20%)

Query: 263 TLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
           TLIRG     ++ E L     M GE   P +  +   ++ L K+  ++ A++L   M   
Sbjct: 134 TLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQG 193

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
           +   PD + Y  I + L K+++V +    F EMI     P+                   
Sbjct: 194 NCQ-PDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPS------------------- 233

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
              I+ Y             N L+  L NL     V     EM+N +I+   V    +  
Sbjct: 234 ---IFTY-------------NSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVD 277

Query: 439 AFYNESRSM--RDIFDSLERR 457
           A   E + M   D+ D + +R
Sbjct: 278 ALCKEGKVMEAHDVVDMMIKR 298


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 140/301 (46%), Gaps = 12/301 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +PY +N ++ +L K G+  +    +R M  +G+      + ++ D +C  G    
Sbjct: 217 KGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSS 276

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE----FLNRVKKIVDPDGDSFA 221
           A   FD M    +  D +   +++  +C    QT R +E    F   V K ++PD  ++ 
Sbjct: 277 AYRLFDEMQKRKISPDFITYTAVICGLC----QTGRVMEADKLFHEMVCKRLEPDEVTYT 332

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++G+ KEG ++EA     +M++     P +++ Y      L +  +VD A + L  M 
Sbjct: 333 ALIDGYCKEGKMKEAFSLHNQMLQ-MGLTP-NIVTYTALADGLCKCGEVDTANELLHEMC 390

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            +     +  +++ ++ L K  +   AV+L   M V  G  PD++TY  + +   K++ +
Sbjct: 391 RKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEV-AGFHPDAVTYTTLMDAYCKSREM 449

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
               +   +M+  E QPT +     +     +   E   ++  ++LE GI+P   + N L
Sbjct: 450 VRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSL 509

Query: 402 L 402
           +
Sbjct: 510 I 510



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 5/188 (2%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y   ++ L +  +V EA + LR M  E   P    ++  +D   KL + + A +L+D M
Sbjct: 225 TYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEM 284

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
                  PD +TY  +   L +  RV E +K FHEM+    +P  +     I       +
Sbjct: 285 QK-RKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGK 343

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEV 431
            + A  + N +L+ G+ P   +   L  GL   G +        EM  +     I  Y  
Sbjct: 344 MKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNS 403

Query: 432 TMHKLKKA 439
            ++ L KA
Sbjct: 404 LVNGLCKA 411



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 106/268 (39%), Gaps = 3/268 (1%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M + G++ +    N ++  +C+              + + + PDG  +  L++G+ K GN
Sbjct: 214 MQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGN 273

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V  A + F EM +R + +P+ +  Y   +  L +  +V EA K    M  +   P    +
Sbjct: 274 VSSAYRLFDEMQKR-KISPDFI-TYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTY 331

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +D   K      A  L + M+   G  P+ +TY  + + L K   V    +  HEM 
Sbjct: 332 TALIDGYCKEGKMKEAFSLHNQMLQM-GLTPNIVTYTALADGLCKCGEVDTANELLHEMC 390

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +   +       + +  L  A   + A+++   +   G  P   +   L+        + 
Sbjct: 391 RKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMV 450

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAF 440
                  +ML+R +    VT + L   F
Sbjct: 451 RAHELLRQMLDRELQPTVVTFNVLMNGF 478



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 103/247 (41%), Gaps = 55/247 (22%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGK 162
           +G  L+ Y +N +V+ L K G  +Q   AV++MK+  V        T+ ++ D+YC + +
Sbjct: 392 KGLELNIYTYNSLVNGLCKAGNIDQ---AVKLMKDMEVAGFHPDAVTYTTLMDAYCKSRE 448

Query: 163 YDEA---------------VMSFDVM----SMHGVEQD----------------VVAVNS 187
              A               V++F+V+     M G+ +D                    NS
Sbjct: 449 MVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNS 508

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER- 246
           L+   C + N  +    +     K V PDG+++ IL++G  K  N++EA     +MV + 
Sbjct: 509 LIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKG 568

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE---------NCFPTLKFFSNALD 297
           F      V +Y   +    + K+  EA +    M+ E         N F  + +    ++
Sbjct: 569 FNLT---VSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKME 625

Query: 298 ILVKLND 304
           + ++L D
Sbjct: 626 LTLELCD 632



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 1/136 (0%)

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           M   G  P+  TYN +   L K  +V E E+   EMI     P  +   T I        
Sbjct: 214 MQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGN 273

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 435
              A  +++ + +  I P   +   ++ GL   GR+ +  +   EM+ +R+   EVT   
Sbjct: 274 VSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTA 333

Query: 436 LKKAFYNESRSMRDIF 451
           L   +  E + M++ F
Sbjct: 334 LIDGYCKEGK-MKEAF 348


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 7/245 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           ++  +  + C  GK D+A  +   M+   +  DV   N ++  +C+   + SRA+EF   
Sbjct: 12  SYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKAR-RISRAIEFF-- 68

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            + + +PD  ++  LL G  K G V +A   FG M E     P  V  Y T +    +  
Sbjct: 69  -ETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSM-EGAGITPSDV-TYTTLIDVFCKMC 125

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           Q + A   L++M    C PT+  + + ++ L K      A QL++ M +  G  PD +TY
Sbjct: 126 QFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKL-AGCKPDRVTY 184

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N +   L   +R+HE +     M++N +QP  +     I  L   D  + A  ++  + +
Sbjct: 185 NTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAK 244

Query: 389 NGILP 393
            G  P
Sbjct: 245 QGCAP 249



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 135/350 (38%), Gaps = 35/350 (10%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F    G G   S   +  ++DV  K  +FE  +  +++M       ++ ++ SI +  C 
Sbjct: 99  FGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCK 158

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGD 218
             K D+A   F+ M + G + D V  N+L+  +C ++ +   A + L   V+    PD  
Sbjct: 159 NRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQ-RLHEAKDLLTVMVENSFQPDKI 217

Query: 219 SFAILLEGWEKEGNVEEANKTFGEM-------------------------------VERF 247
           +F  L+EG      ++EA   F  M                               V  +
Sbjct: 218 TFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNY 277

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
              PE V+ Y      L R +  D A + L+ M      P +  ++     L    +   
Sbjct: 278 PACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGLGDWKEGMR 337

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
           A + +  M+   G  PD + YN++ +   K  R+   EK    M ++   P  +   T +
Sbjct: 338 AYREFRRMLE-QGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLV 396

Query: 368 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
                  + E   E+ + ++  G  P  A+ + L+ GL  +G++     F
Sbjct: 397 GHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFRVGQVDAAYSF 446



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 81/201 (40%), Gaps = 7/201 (3%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  S+  L++   + G +++A  T  EM  R +  P+ V  Y   + TL + +++  A+
Sbjct: 8   PNALSYCYLVKALCRTGKIDKACSTIAEMA-REKLVPD-VFTYNVVIDTLCKARRISRAI 65

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           +F   M      P +  ++  L  L K      A  L+   M   G  P  +TY  + + 
Sbjct: 66  EFFETMPE----PDVVTYNTLLGGLCKNGRVAQACSLFG-SMEGAGITPSDVTYTTLIDV 120

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
             K  +          M   +  PT  +  + I  L    + + A +++  +   G  P 
Sbjct: 121 FCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPD 180

Query: 395 EASANELLVGLRNLGRLSDVR 415
             + N L+ GL    RL + +
Sbjct: 181 RVTYNTLIHGLCVKQRLHEAK 201



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 5/169 (2%)

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           + L+Y   +  L R  ++D+A   +  M  E   P +  ++  +D L K    + A++ +
Sbjct: 9   NALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFF 68

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
           + M       PD +TYN +   L KN RV +    F  M      P+ +   T I +   
Sbjct: 69  ETM-----PEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCK 123

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
             + E A  +   +      P   S   ++ GL    ++    +  EEM
Sbjct: 124 MCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEM 172


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 147/328 (44%), Gaps = 24/328 (7%)

Query: 130 EQMWNAVRVMKEDGVL-------------SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           E + N +R MK D  L             S+  F+ +  +     KYD  +  ++ M M 
Sbjct: 51  EMLRNGIRYMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQML 110

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-DPDGDSFAILLEGWEKEGNVEE 235
           G+  ++   N LL+  CR  +Q S AL FL ++ K+  +PD  +F  LL G+ +   + +
Sbjct: 111 GIPHNLCTCNILLNCFCRC-SQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYD 169

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A   F  MVE   + P +V+ Y T +  L + KQVD AL  L  M+ +   P    +++ 
Sbjct: 170 ALYMFDRMVE-MGYEP-NVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSL 227

Query: 296 LDILV---KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  L    + +D+T  V      M     +PD  T+N + +  +K  R+ E E+ + EMI
Sbjct: 228 ISGLCNSGRWDDATRMVSC----MTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMI 283

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +    P  +  +  I  L      + A +++ +++  G  P   + + L+ G     ++ 
Sbjct: 284 RRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVE 343

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAF 440
              +   EM  R ++   VT   L + +
Sbjct: 344 HGMKLFCEMSQRGVVRNTVTYTVLIQGY 371



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 134/296 (45%), Gaps = 6/296 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D L K+ + +   + +  M+ DG+     T+ S+    C +G++D+A      M+
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMT 248

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
              +  DV   N+L+ A C +E + S A E     +++ +DPD  ++++L+ G      +
Sbjct: 249 KREIYPDVFTFNALIDA-CVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRL 307

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA + FG MV +  + P+ V+ Y   +    + K+V+  +K    M           ++
Sbjct: 308 DEAEQMFGFMVSKGCF-PD-VVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYT 365

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +    +      A +++   MVF G  P+ +TYN++   L  N ++ +      +M K
Sbjct: 366 VLIQGYCRAGKLNVAEEIFK-WMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQK 424

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           +      +     I  +  A E   A +++  +   G+ P   +   +++GL   G
Sbjct: 425 SGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKG 480



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 16/176 (9%)

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
           NCF      S AL  L K+    H               PD +T+  +     +  R+++
Sbjct: 124 NCFCRCSQLSLALSFLGKMMKLGHE--------------PDIVTFGSLLNGFCRGDRIYD 169

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
               F  M++  ++P  +   T I  L  + + + A+++ N +  +GI P   + N L+ 
Sbjct: 170 ALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLIS 229

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 457
           GL N GR  D  R    M  R I     T + L  A   E R     ++++ + RR
Sbjct: 230 GLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRR 285


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 149/315 (47%), Gaps = 10/315 (3%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK----EDGVLSLPTFASIFDSYC 158
           R   +G +     + ++V+ L K G  +  +N +  M+    E GVL    + +I D  C
Sbjct: 211 RMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVL---IYNTIIDGLC 267

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
                D+A+  F  M   G+  +VV  +SL+S +C     +  +    + +++ ++PD  
Sbjct: 268 KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 327

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +F+ L++ + KEG + EA K + EMV+R   +P  ++ Y + +       ++DEA +   
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMVKR-SIDPS-IVTYSSLINGFCMHDRLDEAKQMFE 385

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M  ++CFP +  ++  +    K       ++++  M    G   +++TYN++ + L + 
Sbjct: 386 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQ-RGLVGNTVTYNILIQGLFQA 444

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
                 ++ F EM+ +   P  +   T +  L    + E A+ ++ Y+  + + P   + 
Sbjct: 445 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 504

Query: 399 NELLVGLRNLGRLSD 413
           N ++ G+   G++ D
Sbjct: 505 NIMIEGMCKAGKVED 519



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 153/330 (46%), Gaps = 6/330 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y ++++++   +  +       + ++MK     ++ T +S+ + YC + +  EAV   D 
Sbjct: 117 YTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 176

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M + G + + V  N+L+  +    N+ S A+  ++R V K   PD  ++ +++ G  K G
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLH-NKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG 235

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           + + A     +M E+ +  P  VL Y T +  L + K +D+AL   + M+ +   P +  
Sbjct: 236 DTDLAFNLLNKM-EQGKLEP-GVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVT 293

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S+ +  L      + A +L   M +     PD  T++ + +  +K  ++ E EK + EM
Sbjct: 294 YSSLISCLCNYGRWSDASRLLSDM-IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM 352

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +K    P+ +  ++ I      D  + A +++ +++     P   + N L+ G     R+
Sbjct: 353 VKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRV 412

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
            +      EM  R ++   VT + L +  +
Sbjct: 413 EEGMEVFREMSQRGLVGNTVTYNILIQGLF 442



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 142/331 (42%), Gaps = 23/331 (6%)

Query: 96  SSAVDFFRWAGRGQRLSP----------YAWNLMVDVLGKNGRF---EQMWNAVRVMKED 142
           S   ++ RW+   + LS           + ++ ++D   K G+    E++++   ++K  
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD--EMVKRS 356

Query: 143 GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202
              S+ T++S+ + +C   + DEA   F+ M       DVV  N+L+   C+ +      
Sbjct: 357 IDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM 416

Query: 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
             F    ++ +  +  ++ IL++G  + G+ + A + F EMV   +  P +++ Y T L 
Sbjct: 417 EVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS--DGVPPNIMTYNTLLD 474

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--MVFHG 320
            L +  ++++A+     ++     PT+  ++  ++ + K          WD+   +   G
Sbjct: 475 GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG---WDLFCNLSLKG 531

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD + YN +     +     E +  F EM ++   P      T I   L   + E + 
Sbjct: 532 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 591

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRL 411
           E+   +   G    +AS   L+  + + GRL
Sbjct: 592 ELIKEMRSCGFAG-DASTIGLVTNMLHDGRL 621



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 135/315 (42%), Gaps = 9/315 (2%)

Query: 92  YDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           Y     A++ F+    +G R +   ++ ++  L   GR+      +  M E  +   + T
Sbjct: 269 YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 328

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLN 207
           F+++ D++   GK  EA   +D M    ++  +V  +SL++  C  +  ++  +  EF+ 
Sbjct: 329 FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM- 387

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V K   PD  ++  L++G+ K   VEE  + F EM +R      + + Y   +  L + 
Sbjct: 388 -VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG--NTVTYNILIQGLFQA 444

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
              D A +  + M  +   P +  ++  LD L K      A+ +++ +       P   T
Sbjct: 445 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR-SKMEPTIYT 503

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN++ E + K  +V +    F  +     +P  +   T I+        E A  ++  + 
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563

Query: 388 ENGILPLEASANELL 402
           E+G LP     N L+
Sbjct: 564 EDGTLPNSGCYNTLI 578



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 127/299 (42%), Gaps = 7/299 (2%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-SF 220
           K D+AV  F  M        ++  + LLSAI +  N+    +    +++ +  P    ++
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKM-NKFDVVISLGEQMQNLGIPHNHYTY 119

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           +IL+  + +   +  A    G+M+ +  + P +++   + L      K++ EA+  +  M
Sbjct: 120 SILINCFCRRSQLPLALAVLGKMM-KLGYEP-NIVTLSSLLNGYCHSKRISEAVALVDQM 177

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                 P    F+  +  L   N ++ A+ L D  MV  G  PD +TY ++   L K   
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALID-RMVAKGCQPDLVTYGVVVNGLCKRGD 236

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
                   ++M + + +P  L   T I  L      + A+ ++  +   GI P   + + 
Sbjct: 237 TDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSS 296

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 457
           L+  L N GR SD  R   +M+ R+I     T   L  AF  E +      ++D + +R
Sbjct: 297 LISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR 355



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 127/303 (41%), Gaps = 9/303 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F+ +  +     K+D  +   + M   G+  +    + L++  CR+ +Q   AL  
Sbjct: 80  SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRR-SQLPLALAV 138

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLIT 263
           L ++ K+  +P+  + + LL G+     + EA     +M V  ++ N    + + T +  
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPN---TVTFNTLIHG 195

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF- 322
           L    +  EA+  +  M  + C P L  +   ++ L K  D+  A  L + M    G   
Sbjct: 196 LFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKME--QGKLE 253

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           P  L YN I + L K K + +    F EM     +P  +  ++ I+ L +      A  +
Sbjct: 254 PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
            + ++E  I P   + + L+      G+L +  +  +EM+ R I    VT   L   F  
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373

Query: 443 ESR 445
             R
Sbjct: 374 HDR 376


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 140/301 (46%), Gaps = 12/301 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +PY +N ++ +L K G+  +    +R M  +G+      + ++ D +C  G    
Sbjct: 317 KGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSS 376

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE----FLNRVKKIVDPDGDSFA 221
           A   FD M    +  D +   +++  +C    QT R +E    F   V K ++PD  ++ 
Sbjct: 377 AYRLFDEMQKRKISPDFITYTAVICGLC----QTGRVMEADKLFHEMVCKRLEPDEVTYT 432

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++G+ KEG ++EA     +M++     P +++ Y      L +  +VD A + L  M 
Sbjct: 433 ALIDGYCKEGKMKEAFSLHNQMLQ-MGLTP-NIVTYTALADGLCKCGEVDTANELLHEMC 490

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            +     +  +++ ++ L K  +   AV+L   M V  G  PD++TY  + +   K++ +
Sbjct: 491 RKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEV-AGFHPDAVTYTTLMDAYCKSREM 549

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
               +   +M+  E QPT +     +     +   E   ++  ++LE GI+P   + N L
Sbjct: 550 VRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSL 609

Query: 402 L 402
           +
Sbjct: 610 I 610



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/327 (19%), Positives = 134/327 (40%), Gaps = 4/327 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N++   L + GR  +    +  M+  G +  + +++++ + YC  G+    +   + M
Sbjct: 255 SYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEM 314

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
            + G++ +    N ++  +C+              + + + PDG  +  L++G+ K GNV
Sbjct: 315 QIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNV 374

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A + F EM +R + +P+ +  Y   +  L +  +V EA K    M  +   P    ++
Sbjct: 375 SSAYRLFDEMQKR-KISPDFI-TYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYT 432

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D   K      A  L + M+   G  P+ +TY  + + L K   V    +  HEM +
Sbjct: 433 ALIDGYCKEGKMKEAFSLHNQMLQM-GLTPNIVTYTALADGLCKCGEVDTANELLHEMCR 491

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
              +       + +  L  A   + A+++   +   G  P   +   L+        +  
Sbjct: 492 KGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVR 551

Query: 414 VRRFAEEMLNRRILIYEVTMHKLKKAF 440
                 +ML+R +    VT + L   F
Sbjct: 552 AHELLRQMLDRELQPTVVTFNVLMNGF 578



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 115/304 (37%), Gaps = 40/304 (13%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            F   F     AG  DEA   FD M  +G+   V + N  +S +                
Sbjct: 184 VFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSE-------------- 229

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRG 267
                D DG   A+               K F E  E    WN     +Y     +L + 
Sbjct: 230 -----DLDGIKIAL---------------KVFVEFPEVGVCWNTA---SYNIITHSLCQL 266

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +V EA + L  M+   C P +  +S  ++   ++ +    ++L + M +  G  P+  T
Sbjct: 267 GRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQI-KGLKPNPYT 325

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +   L K  +V E E+   EMI     P  +   T I           A  +++ + 
Sbjct: 326 YNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQ 385

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
           +  I P   +   ++ GL   GR+ +  +   EM+ +R+   EVT   L   +  E + M
Sbjct: 386 KRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGK-M 444

Query: 448 RDIF 451
           ++ F
Sbjct: 445 KEAF 448



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 103/247 (41%), Gaps = 55/247 (22%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGK 162
           +G  L+ Y +N +V+ L K G  +Q   AV++MK+  V        T+ ++ D+YC + +
Sbjct: 492 KGLELNIYTYNSLVNGLCKAGNIDQ---AVKLMKDMEVAGFHPDAVTYTTLMDAYCKSRE 548

Query: 163 YDEA---------------VMSFDVM----SMHGVEQD----------------VVAVNS 187
              A               V++F+V+     M G+ +D                    NS
Sbjct: 549 MVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNS 608

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER- 246
           L+   C + N  +    +     K V PDG+++ IL++G  K  N++EA     +MV + 
Sbjct: 609 LIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKG 668

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE---------NCFPTLKFFSNALD 297
           F      V +Y   +    + K+  EA +    M+ E         N F  + +    ++
Sbjct: 669 FNLT---VSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKME 725

Query: 298 ILVKLND 304
           + ++L D
Sbjct: 726 LTLELCD 732


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 143/319 (44%), Gaps = 10/319 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           R  R     +N ++D L K+    + ++    M   G+   + T++++   +C AG+   
Sbjct: 266 RSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMG 325

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILL 224
           A    + M++  +  DV     L+ A+C+ E +   A   L    K+ V P+  +++ L+
Sbjct: 326 AFSLLNEMTLKNINPDVYTYTILIDALCK-EGKLKEAKNLLGVMTKEGVKPNVVTYSTLM 384

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G+   G V  A + F  MV+  E NP  V +Y   +  L +GK VDEA+  LR M  +N
Sbjct: 385 DGYCLVGEVHNAKQIFHAMVQT-EVNPS-VCSYNIMINGLCKGKSVDEAMNLLREMLHKN 442

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH--GAFPDSLTYNMIFECLIKNKRVH 342
             P    +++ +D L K    T A+   D+M   H  G   D +TY  + + L KN+ + 
Sbjct: 443 VVPNTVTYNSLIDGLCKSGRITSAL---DLMKELHHRGQPADVITYTSLLDGLCKNQNLD 499

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +    F +M +   QP        I  L      + A +++ +IL  G      + N ++
Sbjct: 500 KAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMI 559

Query: 403 VGLRNLGRLSDVRRFAEEM 421
            GL   G L +      +M
Sbjct: 560 GGLCKEGMLDEALAMKSKM 578



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 125/278 (44%), Gaps = 9/278 (3%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
             ++    C  G+  +++   D +   G + + V+  +LL+ +C+   +T  A++ L  +
Sbjct: 205 LTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKI-GETRCAIKLLRMI 263

Query: 210 K-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + +   PD   +  +++G  K+  V EA   + EM  R  + P+ V+ Y T +       
Sbjct: 264 EDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIF-PD-VITYSTLICGFCLAG 321

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           Q+  A   L  M  +N  P +  ++  +D L K      A  L  +M    G  P+ +TY
Sbjct: 322 QLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVM-TKEGVKPNVVTY 380

Query: 329 NMIFE--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           + + +  CL+    VH  ++ FH M++ E  P+  +    I  L      + A+ +   +
Sbjct: 381 STLMDGYCLVG--EVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREM 438

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           L   ++P   + N L+ GL   GR++      +E+ +R
Sbjct: 439 LHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHR 476



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 129/317 (40%), Gaps = 13/317 (4%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSM---HGVEQDVVAVNSLLSAICRQENQTSRAL 203
           L T + + + +C  G   +   SF V+      G + + + + +L+  +C +  +  ++L
Sbjct: 167 LVTLSILINCFCHLG---QMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLK-GEVKKSL 222

Query: 204 EFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
            F ++V  +    +  S+  LL G  K G    A K    M+E     P+ V+ Y T + 
Sbjct: 223 HFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLL-RMIEDRSTRPD-VVMYNTIID 280

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
            L + K V+EA  F   M     FP +  +S  +           A  L +  M      
Sbjct: 281 GLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLN-EMTLKNIN 339

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           PD  TY ++ + L K  ++ E +     M K   +P  +  +T +       E   A +I
Sbjct: 340 PDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQI 399

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
           ++ +++  + P   S N ++ GL     + +      EML++ ++   VT + L      
Sbjct: 400 FHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCK 459

Query: 443 ESR--SMRDIFDSLERR 457
             R  S  D+   L  R
Sbjct: 460 SGRITSALDLMKELHHR 476



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 102/242 (42%), Gaps = 39/242 (16%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S  ++N+M++ L K    ++  N +R M    V+ +  T+ S+ D  C +G+   A+   
Sbjct: 411 SVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLM 470

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             +   G   DV+   SLL  +C+ +N       F+   ++ + P+  ++  L++G  K 
Sbjct: 471 KELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKG 530

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             ++ A K F           +H+         L++G  +D  +    VM G  C   + 
Sbjct: 531 ARLKNAQKLF-----------QHI---------LVKGCCID--VYTYNVMIGGLCKEGM- 567

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
               AL +  K+ D+              G  PD++T+ +I   L +     + EK  HE
Sbjct: 568 -LDEALAMKSKMEDN--------------GCIPDAVTFEIIIRSLFEKDENDKAEKLLHE 612

Query: 351 MI 352
           MI
Sbjct: 613 MI 614


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 147/358 (41%), Gaps = 36/358 (10%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   RG   S  A+N ++  LGK GR  +       MK+D   +L T+  + D  C AG+
Sbjct: 363 RQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGE 422

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A    D M   G+  +V+ VN ++  +C+ +        F     KI  PD  +F  
Sbjct: 423 VEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCS 482

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  K+G V++A + + +M++  +  P  V+ Y + + +  +  + ++  K  + M  
Sbjct: 483 LIDGLGKQGRVDDAYRLYEQMLDS-DKIPNAVV-YTSLIKSFFKCGRKEDGHKIFKEMIH 540

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLW----------DIM----------------- 315
             C P L+  +  +D + K  ++     L+          D+M                 
Sbjct: 541 RGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARE 600

Query: 316 -------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 368
                  M   G   D+  YN   +   K+ +V++  +   EM     QPT +   + I 
Sbjct: 601 TYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVID 660

Query: 369 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            L   D  + A  ++     NG+       + L+ G   +GR+ +     EE++ + +
Sbjct: 661 GLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGL 718



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 135/300 (45%), Gaps = 9/300 (3%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+H +++  +   +  + F+    +G  L  +A+N  +D   K+G+  + +  +  MK  
Sbjct: 588 LIHGLVKAGFARETYEL-FYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTK 646

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           G   ++ T+ S+ D      + DEA M F+    +G+E +VV  +SL+    +       
Sbjct: 647 GRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEA 706

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
            L     ++K + P+  ++  LL+   K   + EA   F  M +  +  P H+  Y   +
Sbjct: 707 YLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNM-KNLKGTPNHI-TYSILI 764

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             L R ++ ++A  F + M+ +   P    ++  +  L K  +   A  L++     +G 
Sbjct: 765 NGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKA-NGG 823

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            PDS +YN I E L  ++R  E  K F E      +   ++  T I  LLDA + +  +E
Sbjct: 824 VPDSASYNAIIEGLSYSRRAMEAYKIFEE---TRMKGCNIHTKTCIA-LLDALQKDECLE 879



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/337 (20%), Positives = 136/337 (40%), Gaps = 39/337 (11%)

Query: 119 MVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D LGK GR +  +    +++  D + +   + S+  S+   G+ ++    F  M   G
Sbjct: 483 LIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRG 542

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEA 236
              D+  +N+ +  + +   +T +       +K +   PD  S++IL+ G  K G   E 
Sbjct: 543 CSPDLRLLNAYMDCVFKA-GETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARET 601

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            + F  M E+      H  AY TF+    +  +V++A + L  MK +   PT+  + + +
Sbjct: 602 YELFYAMKEQGCVLDTH--AYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVI 659

Query: 297 DILVKLNDSTHAVQLWD--------------------------------IM--MVFHGAF 322
           D L K++    A  L++                                IM  ++  G  
Sbjct: 660 DGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 719

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           P+  T+N + + L+K + ++E    F  M   +  P  +  +  I  L    +   A   
Sbjct: 720 PNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVF 779

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
           W  + + G+ P   +   ++ GL   G +++     E
Sbjct: 780 WQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFE 816



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 135/333 (40%), Gaps = 7/333 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+  ++  L      + M      M+E G  +S+  F ++   +   G+ D A+   D M
Sbjct: 200 AYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEM 259

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGN 232
             + +  D+V  N  +    +   +   A +F + +K   + PD  ++  ++    K   
Sbjct: 260 KSNCLHADIVLYNVCIDCFGKA-GKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNR 318

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA + F +M +    N     AY T ++      + DEA   L   K   C P++  +
Sbjct: 319 LDEAVEIFEQMEQ--NRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAY 376

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  L  L K      A++ ++ M     A P+  TYN++ + L K   V    K    M 
Sbjct: 377 NCILTCLGKKGRLGEALRTFEEMK--KDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMK 434

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +    P  +     I  L  A + + A  I+  +      P E +   L+ GL   GR+ 
Sbjct: 435 EAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVD 494

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           D  R  E+ML+   +   V    L K+F+   R
Sbjct: 495 DAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGR 527



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 78/185 (42%), Gaps = 6/185 (3%)

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           + + +F++ P    AY T +  L   ++ D  L     M+      ++  F+  + +  +
Sbjct: 187 QCMRKFKFRPAFS-AYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAR 245

Query: 302 LNDSTHAVQLWDIMM--VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
                 A+ L D M     H    D + YN+  +C  K  +V    KFFHE+  +   P 
Sbjct: 246 EGRLDAALSLLDEMKSNCLH---ADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPD 302

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
            +   + I +L   +  + A+EI+  + +N  +P   + N +++G  + G+  +     E
Sbjct: 303 DVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLE 362

Query: 420 EMLNR 424
               R
Sbjct: 363 RQKAR 367


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 149/315 (47%), Gaps = 10/315 (3%)

Query: 103  RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK----EDGVLSLPTFASIFDSYC 158
            R   +G +     + ++V+ L K G  +  +N +  M+    E GVL    + +I D  C
Sbjct: 825  RMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVL---IYNTIIDGLC 881

Query: 159  GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
                 D+A+  F  M   G+  +VV  +SL+S +C     +  +    + +++ ++PD  
Sbjct: 882  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 941

Query: 219  SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            +F+ L++ + KEG + EA K + EMV+R   +P  ++ Y + +       ++DEA +   
Sbjct: 942  TFSALIDAFVKEGKLVEAEKLYDEMVKR-SIDPS-IVTYSSLINGFCMHDRLDEAKQMFE 999

Query: 279  VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
             M  ++CFP +  ++  +    K       ++++   M   G   +++TYN++ + L + 
Sbjct: 1000 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR-EMSQRGLVGNTVTYNILIQGLFQA 1058

Query: 339  KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
                  ++ F EM+ +   P  +   T +  L    + E A+ ++ Y+  + + P   + 
Sbjct: 1059 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 1118

Query: 399  NELLVGLRNLGRLSD 413
            N ++ G+   G++ D
Sbjct: 1119 NIMIEGMCKAGKVED 1133



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 139/297 (46%), Gaps = 5/297 (1%)

Query: 146  SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
            ++ T +S+ + YC + +  EAV   D M + G + + V  N+L+  +    N+ S A+  
Sbjct: 764  NIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH-NKASEAMAL 822

Query: 206  LNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
            ++R V K   PD  ++ +++ G  K G+ + A     +M E+ +  P  VL Y T +  L
Sbjct: 823  IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM-EQGKLEP-GVLIYNTIIDGL 880

Query: 265  IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
             + K +D+AL   + M+ +   P +  +S+ +  L      + A +L   M +     PD
Sbjct: 881  CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM-IERKINPD 939

Query: 325  SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
              T++ + +  +K  ++ E EK + EM+K    P+ +  ++ I      D  + A +++ 
Sbjct: 940  VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 999

Query: 385  YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
            +++     P   + N L+ G     R+ +      EM  R ++   VT + L +  +
Sbjct: 1000 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLF 1056



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 140/297 (47%), Gaps = 5/297 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     KYD  +     M + G+  D+   N +++  C    Q S AL  
Sbjct: 187 SIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCC-FQVSLALSI 245

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  +   L+ G+ +   V +A     +MVE   + P+ ++AY   + +L
Sbjct: 246 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE-IGYKPD-IVAYNAIIDSL 303

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            + K+V++A  F + ++ +   P +  ++  ++ L   +  + A +L   M +     P+
Sbjct: 304 CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKKITPN 362

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TY+ + +  +KN +V E ++ F EM++    P  +  ++ I  L   D  + A ++++
Sbjct: 363 VITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFD 422

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
            ++  G L    S N L+ G     R+ D  +   EM  R ++   VT + L + F+
Sbjct: 423 LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFF 479



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 129/279 (46%), Gaps = 5/279 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T  S+ + +C   +  +AV   D M   G + D+VA N+++ ++C+ + + + A +F   
Sbjct: 260 TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTK-RVNDAFDFFKE 318

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + +K + P+  ++  L+ G        +A +   +M+++ +  P +V+ Y   L   ++ 
Sbjct: 319 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK-KITP-NVITYSALLDAFVKN 376

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +V EA +    M   +  P +  +S+ ++ L   +    A Q++D +MV  G   D ++
Sbjct: 377 GKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFD-LMVSKGCLADVVS 435

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +     K KRV +  K F EM +       +   T I     A + + A E ++ + 
Sbjct: 436 YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD 495

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
             GI P   + N LL GL + G L       E+M  R +
Sbjct: 496 FFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 534



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 135/320 (42%), Gaps = 4/320 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+N ++D L K  R    ++  + ++  G+  ++ T+ ++ +  C + ++ +A      M
Sbjct: 295 AYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM 354

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               +  +V+  ++LL A  +          F   V+  +DPD  +++ L+ G      +
Sbjct: 355 IKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRI 414

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EAN+ F  MV +       V++Y T +    + K+V++ +K  R M           ++
Sbjct: 415 DEANQMFDLMVSK--GCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 472

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +    +  D   A + +   M F G  PD  TYN++   L  N  + +    F +M K
Sbjct: 473 TLIQGFFQAGDVDKAQEFFS-QMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQK 531

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
            E     +   T I  +    + E A  ++  +   G+ P   +   ++ GL   G L +
Sbjct: 532 REMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHE 591

Query: 414 VRRFAEEMLNRRILIYEVTM 433
           V     +M    ++  + T+
Sbjct: 592 VEALYTKMKQEGLMKNDCTL 611



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 142/331 (42%), Gaps = 23/331 (6%)

Query: 96   SSAVDFFRWAGRGQRLSP----------YAWNLMVDVLGKNGRF---EQMWNAVRVMKED 142
            S   ++ RW+   + LS           + ++ ++D   K G+    E++++   ++K  
Sbjct: 913  SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD--EMVKRS 970

Query: 143  GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202
               S+ T++S+ + +C   + DEA   F+ M       DVV  N+L+   C+ +      
Sbjct: 971  IDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM 1030

Query: 203  LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
              F    ++ +  +  ++ IL++G  + G+ + A + F EMV   +  P +++ Y T L 
Sbjct: 1031 EVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS--DGVPPNIMTYNTLLD 1088

Query: 263  TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--MVFHG 320
             L +  ++++A+     ++     PT+  ++  ++ + K          WD+   +   G
Sbjct: 1089 GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG---WDLFCNLSLKG 1145

Query: 321  AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
              PD + YN +     +     E +  F EM ++   P      T I   L   + E + 
Sbjct: 1146 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 1205

Query: 381  EIWNYILENGILPLEASANELLVGLRNLGRL 411
            E+   +   G    +AS   L+  + + GRL
Sbjct: 1206 ELIKEMRSCGFAG-DASTIGLVTNMLHDGRL 1235



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 135/315 (42%), Gaps = 9/315 (2%)

Query: 92   YDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
            Y     A++ F+    +G R +   ++ ++  L   GR+      +  M E  +   + T
Sbjct: 883  YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 942

Query: 150  FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLN 207
            F+++ D++   GK  EA   +D M    ++  +V  +SL++  C  +  ++  +  EF+ 
Sbjct: 943  FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM- 1001

Query: 208  RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
             V K   PD  ++  L++G+ K   VEE  + F EM +R      + + Y   +  L + 
Sbjct: 1002 -VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG--NTVTYNILIQGLFQA 1058

Query: 268  KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
               D A +  + M  +   P +  ++  LD L K      A+ +++ +       P   T
Sbjct: 1059 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR-SKMEPTIYT 1117

Query: 328  YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
            YN++ E + K  +V +    F  +     +P  +   T I+        E A  ++  + 
Sbjct: 1118 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 1177

Query: 388  ENGILPLEASANELL 402
            E+G LP     N L+
Sbjct: 1178 EDGTLPNSGCYNTLI 1192



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 127/303 (41%), Gaps = 9/303 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F+ +  +     K+D  +   + M   G+  +    + L++  CR+ +Q   AL  
Sbjct: 694 SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRR-SQLPLALAV 752

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLIT 263
           L ++ K+  +P+  + + LL G+     + EA     +M V  ++ N    + + T +  
Sbjct: 753 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPN---TVTFNTLIHG 809

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF- 322
           L    +  EA+  +  M  + C P L  +   ++ L K  D+  A  L + M    G   
Sbjct: 810 LFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKME--QGKLE 867

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           P  L YN I + L K K + +    F EM     +P  +  ++ I+ L +      A  +
Sbjct: 868 PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 927

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
            + ++E  I P   + + L+      G+L +  +  +EM+ R I    VT   L   F  
Sbjct: 928 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 987

Query: 443 ESR 445
             R
Sbjct: 988 HDR 990



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 127/299 (42%), Gaps = 7/299 (2%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-SF 220
           K D+AV  F  M        ++  + LLSAI +  N+    +    +++ +  P    ++
Sbjct: 675 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKM-NKFDVVISLGEQMQNLGIPHNHYTY 733

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           +IL+  + +   +  A    G+M+ +  + P +++   + L      K++ EA+  +  M
Sbjct: 734 SILINCFCRRSQLPLALAVLGKMM-KLGYEP-NIVTLSSLLNGYCHSKRISEAVALVDQM 791

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                 P    F+  +  L   N ++ A+ L D  MV  G  PD +TY ++   L K   
Sbjct: 792 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALID-RMVAKGCQPDLVTYGVVVNGLCKRGD 850

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
                   ++M + + +P  L   T I  L      + A+ ++  +   GI P   + + 
Sbjct: 851 TDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSS 910

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 457
           L+  L N GR SD  R   +M+ R+I     T   L  AF  E +      ++D + +R
Sbjct: 911 LISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR 969



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 69/381 (18%), Positives = 144/381 (37%), Gaps = 64/381 (16%)

Query: 97  SAVDFFRWAGRGQRLSPYAW--NLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASI 153
           S +DFF        +SP  W  N+++  L  NG  E+       M K +  L + T+ ++
Sbjct: 492 SQMDFFG-------ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTV 544

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
               C  GK +EA   F  +S+ G++ D+V   +++S +C +          L+ V+ + 
Sbjct: 545 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTK--------GLLHEVEALY 596

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
                   +  +    +G++  + +   +M+            Y   L+  I+     +A
Sbjct: 597 TKMKQEGLMKNDCTLSDGDITLSAELIKKMLS---------CGYAPSLLKDIKSGVCKKA 647

Query: 274 LKFLRVMKGENC--------------------------------FPTLKFFSNALDILVK 301
           L  LR   G+                                  FP++  FS  L  + K
Sbjct: 648 LSLLRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAK 707

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
           +N     + L + M    G   +  TY+++  C  +  ++        +M+K  ++P  +
Sbjct: 708 MNKFDVVISLGEQMQNL-GIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIV 766

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
             ++ +     +     A+ + + +   G  P   + N L+ GL    + S+     + M
Sbjct: 767 TLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRM 826

Query: 422 LNRR----ILIYEVTMHKLKK 438
           + +     ++ Y V ++ L K
Sbjct: 827 VAKGCQPDLVTYGVVVNGLCK 847



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 1/183 (0%)

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
           T +R  ++++A+     M     FP++  F+  L  +VKL      + L   M V  G  
Sbjct: 162 TRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVL-GIR 220

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
            D  T+N++  C     +V        +M+K  ++P  +   + +      +    A+ +
Sbjct: 221 NDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 280

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
            + ++E G  P   + N ++  L    R++D   F +E+  + I    VT   L     N
Sbjct: 281 VDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCN 340

Query: 443 ESR 445
            SR
Sbjct: 341 SSR 343


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 168/371 (45%), Gaps = 44/371 (11%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +L+P    +N ++  LGK GR ++     + M  +D   +  +F ++ D  C  G+ D A
Sbjct: 572 KLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLA 631

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +     M+      DV+  N+++  + + EN+ + A    +++KK++ PD  +   LL G
Sbjct: 632 LKMLFRMTEMNCFPDVLTYNTVIYGLIK-ENRVNYAFWLFHQMKKVIYPDYVTLCTLLPG 690

Query: 227 WEKEGNVEEANKTFGEMVERFE-------WN------------PEHVLAYETF------- 260
             K+G +E+A +   E V           W              + +L  E+        
Sbjct: 691 VIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGILIEAEIGQSILFAESLVCNTICE 750

Query: 261 ----LITLIR-----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
               LI L++     GK VD    FL++ K     P+L+ +++ +D L+K   +  A  L
Sbjct: 751 DDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGL 810

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
           +   M   G  PD  TYN+  + L K+ ++ E+   + EM+    +P  +     I  L+
Sbjct: 811 F-YKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLV 869

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL---- 427
            ++  + AI+++  ++     P   +   L+ GL  LGRL + ++F EEML+   +    
Sbjct: 870 KSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCP 929

Query: 428 IYEVTMHKLKK 438
           +Y + M+   K
Sbjct: 930 LYNILMNGFGK 940



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 116/240 (48%), Gaps = 7/240 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A N  +  L + GR E+       +K+ G+     T+  +   Y  AG+ D+A+     M
Sbjct: 474 ACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEM 533

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
             +G + +VV +NSL+  +  + ++   A +   R+K++ + P   ++  LL G  KEG 
Sbjct: 534 EENGCDPEVVIINSLIDTL-YKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGR 592

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V+EA   F  M+   +  P + +++ T L  L +  +VD ALK L  M   NCFP +  +
Sbjct: 593 VQEATALFKGMIA--DDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTY 650

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +  L+K N   +A  L+  M      +PD +T   +   +IK+ R+ +  +   E +
Sbjct: 651 NTVIYGLIKENRVNYAFWLFHQMKKV--IYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFV 708



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 124/286 (43%), Gaps = 41/286 (14%)

Query: 139 MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M+ DG L  + TF  + D+ C  GK DEA  + DVM   GV  ++   N+L+  + R  N
Sbjct: 358 MEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRL-N 416

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +   ALE  N ++ + ++    ++ + ++ + K G   +A KTF +M  +      +++A
Sbjct: 417 RLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKM--KTNGIVPNIVA 474

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
               L +L    +++EA +F   +K   C                               
Sbjct: 475 CNASLYSLAEQGRLEEAKEFFNGLK--KC------------------------------- 501

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
              G  PD++TYN++  C  K  RV +  K   EM +N   P  +   + I  L  AD  
Sbjct: 502 ---GLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRV 558

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
           + A +++  + E  + P   + N LL GL   GR+ +     + M+
Sbjct: 559 DEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMI 604



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 147/340 (43%), Gaps = 5/340 (1%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+H +L+  +   +  V + R    G + S   ++ ++  LGK    E +   ++ M+  
Sbjct: 198 LIHLLLKSGFCREALKV-YRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESL 256

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           G+  ++ TF         AGK DEA      M   G   DVV    L+ A+C      + 
Sbjct: 257 GLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNA 316

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
              FL        PD  ++  LL+ +   G+++   + + EM E   + P+ V+ +   +
Sbjct: 317 KELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEM-EADGYLPD-VVTFTILI 374

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             L +  +VDEA   L VMK +   P L  ++  +  L++LN    A++L++ M    G 
Sbjct: 375 DALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESL-GL 433

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
              + TY +  +   K+    +  K F +M  N   P  + C  ++  L +    E A E
Sbjct: 434 ETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKE 493

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            +N + + G+ P   + N L+      GR+ D  +   EM
Sbjct: 494 FFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEM 533



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 12/295 (4%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            A+N ++D L K    E  W     MK  G    + T+    D+   +GK  E    ++ M
Sbjct: 790  AYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEM 849

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGN 232
               G + + +  N ++  + +  N   +A++ + + +     P   ++  L++G  K G 
Sbjct: 850  LFRGCKPNTITHNIVIFGLVKS-NSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGR 908

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +EEA + F EM++ +   P   L Y   +    +   V+ A +  R M  E   P LK +
Sbjct: 909  LEEAKQFFEEMLD-YGCMPNCPL-YNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSY 966

Query: 293  SNALDILV---KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
            S  +D L    K++D+ H  +     +   G  PD + YN++   L +++RV E    F 
Sbjct: 967  SIMVDCLCMVGKVDDALHYFE----ELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFD 1022

Query: 350  EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            EM      P        I  L  A   E A +++  +   G+ P   + N L+ G
Sbjct: 1023 EMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRG 1077



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 11/201 (5%)

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G   +A   F ++ + F   P  + AY + +  L++ +  + A      MK   C P 
Sbjct: 764 KHGKAVDAYNVFLKLTKSFCITPS-LEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPD 822

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           +  ++  LD L K   S    +L+D+   M+F G  P+++T+N++   L+K+  + +   
Sbjct: 823 VFTYNLFLDALGK---SGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAID 879

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            +++++  ++ PTP      I  LL     E A + +  +L+ G +P     N L+ G  
Sbjct: 880 LYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNG-- 937

Query: 407 NLGRLSDVRRFAEEMLNRRIL 427
             G+  DV    E  L RR++
Sbjct: 938 -FGKQGDVETACE--LFRRMV 955



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 13/185 (7%)

Query: 116  WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            +N++++  GK G  E      R M ++G+   L +++ + D  C  GK D+A+  F+ + 
Sbjct: 931  YNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELK 990

Query: 175  MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
            + G++ D+V  N +++ + R + +   AL   + ++ + + PD  ++  L+      G V
Sbjct: 991  LSGLDPDLVCYNLMINGLGRSQ-RVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMV 1049

Query: 234  EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV----DEALKFLRVMKGENCFPTL 289
            EEA K + E+  + +    +V  Y      LIRG  +    D A    + M    C P  
Sbjct: 1050 EEAGKMYEEL--QLKGLEPNVFTYN----ALIRGHSMSGNPDRAYAVYKKMMVGGCRPNT 1103

Query: 290  KFFSN 294
              F+ 
Sbjct: 1104 GTFAQ 1108



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 134/309 (43%), Gaps = 13/309 (4%)

Query: 119  MVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
            +V  L K+G+    +N    + +   +  SL  + S+ D    A   + A   F  M   
Sbjct: 758  LVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNA 817

Query: 177  GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV----DPDGDSFAILLEGWEKEGN 232
            G   DV   N  L A+     ++ +  E  +  ++++     P+  +  I++ G  K  +
Sbjct: 818  GCTPDVFTYNLFLDAL----GKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNS 873

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +++A   + +++   +++P     Y   +  L++  +++EA +F   M    C P    +
Sbjct: 874  LDKAIDLYYDLMSG-DFSPTP-WTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLY 931

Query: 293  SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
            +  ++   K  D   A +L+   MV  G  PD  +Y+++ +CL    +V +   +F E+ 
Sbjct: 932  NILMNGFGKQGDVETACELFR-RMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELK 990

Query: 353  KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
             +   P  +     I  L  +   E A+ +++ +   GI P   + N L++ L   G + 
Sbjct: 991  LSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVE 1050

Query: 413  DVRRFAEEM 421
            +  +  EE+
Sbjct: 1051 EAGKMYEEL 1059



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 103/244 (42%), Gaps = 5/244 (2%)

Query: 184  AVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
            A NSL+  + +    T  A     ++K     PD  ++ + L+   K G ++E    + E
Sbjct: 790  AYNSLIDGLLKAR-LTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEE 848

Query: 243  MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
            M+  F     + + +   +  L++   +D+A+     +   +  PT   +   +D L+KL
Sbjct: 849  ML--FRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKL 906

Query: 303  NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                 A Q ++ M+ + G  P+   YN++     K   V    + F  M+K   +P   +
Sbjct: 907  GRLEEAKQFFEEMLDY-GCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKS 965

Query: 363  CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
             +  +  L    + + A+  +  +  +G+ P     N ++ GL    R+ +     +EM 
Sbjct: 966  YSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMR 1025

Query: 423  NRRI 426
            NR I
Sbjct: 1026 NRGI 1029



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 123/299 (41%), Gaps = 14/299 (4%)

Query: 101  FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
            F++    G     + +NL +D LGK+G+ +++++    M   G   +  T   +      
Sbjct: 811  FYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVK 870

Query: 160  AGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD---- 214
            +   D+A+ + +D+MS      D          +     +  R  E     ++++D    
Sbjct: 871  SNSLDKAIDLYYDLMS-----GDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCM 925

Query: 215  PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
            P+   + IL+ G+ K+G+VE A + F  MV+  E     + +Y   +  L    +VD+AL
Sbjct: 926  PNCPLYNILMNGFGKQGDVETACELFRRMVK--EGIRPDLKSYSIMVDCLCMVGKVDDAL 983

Query: 275  KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
             +   +K     P L  ++  ++ L +      A+ L+D M    G  PD  TYN +   
Sbjct: 984  HYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRN-RGITPDLYTYNALILN 1042

Query: 335  LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L     V E  K + E+     +P        I     +  P+ A  ++  ++  G  P
Sbjct: 1043 LGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRP 1101



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 92/212 (43%), Gaps = 5/212 (2%)

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
           ALE + +V  +++  G S+  L+    K G   EA K +  MV   E     +  Y   +
Sbjct: 179 ALEKMRKVGFVLN--GYSYIGLIHLLLKSGFCREALKVYRRMVS--EGIKPSLKTYSALM 234

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
           + L + + ++  +  L+ M+     P +  F+  + IL +      A  +    M   G 
Sbjct: 235 VALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILK-RMDDAGC 293

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            PD +TY ++ + L    +++  ++ F +M  +  +P  +   T +    D  + +   E
Sbjct: 294 GPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKE 353

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSD 413
            W+ +  +G LP   +   L+  L  +G++ +
Sbjct: 354 FWSEMEADGYLPDVVTFTILIDALCKVGKVDE 385


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 142/322 (44%), Gaps = 39/322 (12%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           GRG + +   +N+MV    K G+ +++   VR M+E G L  + T+ ++   +C  GK D
Sbjct: 365 GRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMD 424

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA    D M   G++ D V +N++L A+CR                              
Sbjct: 425 EAFRLMDEMGRKGLKMDDVTLNTMLRALCR------------------------------ 454

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
                E  ++EA+        R  +  E  ++Y T +I   + ++  +AL+    MK + 
Sbjct: 455 -----ERKLDEAHDLLCSARRRGYFVDE--VSYGTLIIGYFKHEKASQALRLWDEMKEKE 507

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P++  +++ +  L ++  +  A+   D ++   G  PD +TYN I     +  +V + 
Sbjct: 508 IIPSIITYNSMIAGLCQMGKTNQAIDKLDELLE-SGLVPDEITYNTIIHGYCQEGQVEKA 566

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            +F ++M++  ++P  + C T +  L      E A++++N  +  G      S N +++ 
Sbjct: 567 FQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILS 626

Query: 405 LRNLGRLSDVRRFAEEMLNRRI 426
           L    R  +     EEM  +++
Sbjct: 627 LCKEKRFGEAFDLLEEMEEKKL 648



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 144/333 (43%), Gaps = 6/333 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++D L K GR  +  + +  MK  G+  +  TF  +    C  G   EA    ++M
Sbjct: 234 TYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELM 293

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
           S + V  D    N ++S  C+Q  + + A+     ++ + + PD  ++  L+ G  + G+
Sbjct: 294 SQNSVVPDAWTYNVMISGFCKQ-GRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGS 352

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            EE  K   EM  R    P  V  Y   +   ++  ++DE  K +R M+   C P +  +
Sbjct: 353 SEEGFKLIEEMEGR-GMKPNSV-TYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTY 410

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +    K+     A +L D  M   G   D +T N +   L + +++ E         
Sbjct: 411 NTLISWHCKVGKMDEAFRLMD-EMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSAR 469

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +  +    ++  T I      ++   A+ +W+ + E  I+P   + N ++ GL  +G+ +
Sbjct: 470 RRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTN 529

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
                 +E+L   ++  E+T + +   +  E +
Sbjct: 530 QAIDKLDELLESGLVPDEITYNTIIHGYCQEGQ 562



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 118/280 (42%), Gaps = 6/280 (2%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           +S P       +Y   G+  +A   F+ M   G++  ++  N+LL+A+ R  +  S  L 
Sbjct: 122 ISKPLLDISIGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLS 181

Query: 205 ---FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
              F + +K  V  + +SF IL+ G   E    EA +  G+M  R    P   + Y T L
Sbjct: 182 KAVFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKM--RDYGCPPDNITYNTIL 239

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             L +  +++EA   L  MK +  FP    F+  +    +L     A  + ++M   +  
Sbjct: 240 DGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQ-NSV 298

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            PD+ TYN++     K  R+ E  +   EM   +  P  +   T I    +    E   +
Sbjct: 299 VPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFK 358

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           +   +   G+ P   + N ++      G++ +V +   +M
Sbjct: 359 LIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKM 398



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 92/460 (20%), Positives = 175/460 (38%), Gaps = 102/460 (22%)

Query: 17  IPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPY--ISSSARIICEILAHASSDDIESALAC 74
           IP   S++      +P +   P    H+  P   IS  A + C     A+   I + +  
Sbjct: 95  IPVDKSSSLHYLLLHPQKTNNPVSCLHISKPLLDISIGAYVACGRPHQAAQ--IFNRMKR 152

Query: 75  TGIIPTPDLVHEVLQLSYDSPSSA---------VDFFRWAGRGQRLSPYAWNLMVDVLGK 125
            G+ PT    + +L      PSS           DF +    G +++  ++N+++     
Sbjct: 153 LGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKI---GVKINTNSFNILIHGSCM 209

Query: 126 NGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
             RF +   A+RV+ +      P    T+ +I D  C  G+ +EA      M   G+  +
Sbjct: 210 ENRFGE---AIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPN 266

Query: 182 VVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
               N L+   CR     + +  +E ++  +  V PD  ++ +++ G+ K+G + EA + 
Sbjct: 267 RTTFNILVVGCCRLGWLKEAANVIELMS--QNSVVPDAWTYNVMISGFCKQGRIAEAMRL 324

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
             EM E  + +P+ V+ Y T +         +E  K +  M+G                 
Sbjct: 325 REEM-ENLKLSPD-VVTYNTLINGCFEHGSSEEGFKLIEEMEG----------------- 365

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
                               G  P+S+TYN++ +  +K  ++ EV+K   +M        
Sbjct: 366 -------------------RGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKM-------- 398

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
                                       E+G LP   + N L+     +G++ +  R  +
Sbjct: 399 ---------------------------EESGCLPDIVTYNTLISWHCKVGKMDEAFRLMD 431

Query: 420 EMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 457
           EM  + + + +VT++ + +A   E +     D+  S  RR
Sbjct: 432 EMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRR 471


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 146/340 (42%), Gaps = 12/340 (3%)

Query: 69  ESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSP----YAWNLMVDVLG 124
           E+ALA       P+ V  VLQ+  D   S   FFRW  R  R       +  N ++  L 
Sbjct: 22  EAALAKYSRNLVPNTVGRVLQVIKDVDVSLF-FFRWVTRSHRGESIHNNFTCNCLLRTLV 80

Query: 125 KNGRFEQMWNAVR--VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
           K  R  Q +   R  ++ +    +  T+ ++   +C AG  + A      M   G   DV
Sbjct: 81  KARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDV 140

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
           V  +S++ A+C   N  SRA+++  R      PD   F IL+ G  K   + EA +   E
Sbjct: 141 VTHSSIVQALCNTGN-LSRAMQYF-RESVECAPDSVLFNILVHGLCKANQLSEARQMIEE 198

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M ER    P+ V+ Y + +  L +  +++EA + L  M      P L  ++  +    K 
Sbjct: 199 MSER-GIVPD-VVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKT 256

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
             +  A QL +  M+  G  PD +T+N +     +  ++ +  +  H M K    P  + 
Sbjct: 257 GCTGLAHQLIE-RMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVT 315

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
               I+ L DA     A E+ + +   GILP   + N L+
Sbjct: 316 YNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLI 355



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 130/297 (43%), Gaps = 6/297 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D L K+ R E+    +  M +  V  +L T+ ++   YC  G    A    + M 
Sbjct: 211 YNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMI 270

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNV 233
             G   DVV  NSL+S  C Q+++  +A E L+ +KK +  P+  ++ +L+ G    G  
Sbjct: 271 QSGTHPDVVTFNSLISGFC-QKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRA 329

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA +   EM  R    P+ ++ Y + +    R  Q+++A +   +M      P    + 
Sbjct: 330 NEACELLSEMDGRGIL-PD-IITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYC 387

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
                L+K      A  L D  M   GA P+  T+N + E L  ++R+ E       M +
Sbjct: 388 TLAVALLKSERFDEAFALLD-NMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRR 446

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
               P        +T L  A   + A E+   ++  GI PL +S+  ++  L   G+
Sbjct: 447 VGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGK 503



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 129/298 (43%), Gaps = 15/298 (5%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +    C A +  EA    + MS  G+  DVV  NSL+  +C+              V
Sbjct: 176 FNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMV 235

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH--VLAYETFLITLIRG 267
           K+ V P+  ++  L+ G+ K G    A+    +++ER   +  H  V+ + + +    + 
Sbjct: 236 KRKVRPNLVTYNTLIYGYCKTGCTGLAH----QLIERMIQSGTHPDVVTFNSLISGFCQK 291

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            ++D+A + L +MK   C P L  ++  +  L     +  A +L    M   G  PD +T
Sbjct: 292 SKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLS-EMDGRGILPDIIT 350

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +     +N ++ +  +  + M++    P  ++  T    LL ++  + A  + + + 
Sbjct: 351 YNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMF 410

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI------LIYEVTMHKLKKA 439
           + G +P   + N L+ GL    RL + R     M  RR+        YEV +  L KA
Sbjct: 411 DAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVM--RRVGCDPAASTYEVLVTGLCKA 466



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 89/191 (46%), Gaps = 10/191 (5%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           GRG       +N ++ +  +N + EQ +    +M E GV+    ++ ++  +   + ++D
Sbjct: 341 GRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFD 400

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAIC--RQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           EA    D M   G   ++   NSL+  +C  R+ ++    L  + RV    DP   ++ +
Sbjct: 401 EAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVG--CDPAASTYEV 458

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL-RVMK 281
           L+ G  K G V++A +    MV   E     V +  T + TL R  + D AL +  +V+ 
Sbjct: 459 LVTGLCKAGRVDDAKEVLVMMVS--EGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVVA 516

Query: 282 GEN--CFPTLK 290
            E+  C P+ +
Sbjct: 517 AESKACDPSYQ 527


>gi|356560073|ref|XP_003548320.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 173/415 (41%), Gaps = 60/415 (14%)

Query: 63  ASSDDIESALACTGIIPTPDLVHEVL-QLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLM 119
           A  +++E AL   GI  +  LV  VL +L YD    A+ FF WAG  +  S  P A+N M
Sbjct: 5   AEFNNMEKALGQLGIPLSTPLVTGVLHRLRYDE-KIALRFFTWAGHQEDYSHEPCAYNDM 63

Query: 120 VDVLG----KNGRFEQMWNAVRVMKEDGVLSLP--TFASIFDSYCGAGKYDEAVMSFDVM 173
           +D+L     K  +F  + + +  MK +   ++P      I   Y    KY   V  F   
Sbjct: 64  MDILSSTRYKVKQFRIVCDVLEYMKRNNKTTVPVEVLLVILRKY--TEKYLTHVQKFARK 121

Query: 174 SMHGV--EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
               V  + ++ A N LL A+C+       A     +++K V P+ +++ I + GW +  
Sbjct: 122 RRIRVKTQPEINAFNLLLDALCKC-CLVEDAETLYKKMRKTVKPNAETYNIFVFGWCRVR 180

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL---KFLRVMKGENCFPT 288
           N     K   EMVE     P++  AY T + T  +   V EA+   +F+R        PT
Sbjct: 181 NPTRGMKLLEEMVE-LGHRPDN-FAYNTAIDTYCKAGMVTEAVDLFEFMRTKGSSISSPT 238

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
            K ++    I+V L       + + ++  M+  G  PD  TY  I E +    ++ E  K
Sbjct: 239 AKTYA---IIIVALAQHDRMEECFKLIGHMISSGCLPDVTTYKEIIEGMCVCGKIDEAYK 295

Query: 347 FFHEMIKNEWQP----------------------------TPLNCATA-------ITMLL 371
           F  EM    ++P                              LNC  +       I+M  
Sbjct: 296 FLEEMGNKSYRPDIVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFF 355

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           + D+P+ A E W  +   G  P   + + ++ GL N  ++ D     EE++N+ I
Sbjct: 356 EIDDPDGAFETWQEMDNRGCRPDIDTYSVMIDGLFNCNKVEDACFLLEEVINKGI 410


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 140/327 (42%), Gaps = 16/327 (4%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   A RG  L    +  ++  L + G+  Q  +  + M   G +  + T +++ D  C 
Sbjct: 127 FKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCK 186

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGD 218
           AG+   AV  F  M   G+  + V  ++L+  +C+       ALE L ++KK    PD  
Sbjct: 187 AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC-ALEMLAQMKKAFCTPDTI 245

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ IL++G  K G+V  A   F EM+E     P+ V  Y   +    +    D A     
Sbjct: 246 TYNILIDGLCKSGDVAAARAFFDEMLEA-GCKPD-VYTYNILISGFCKAGNTDAACGVFD 303

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M    C P +  +   +  L K    T A  L+   M   G  PDS  Y+ + + L K+
Sbjct: 304 DMSSSRCSPNVVTYGTLISGLCKRRQLTKA-SLYYQHMKERGCPPDSFVYSSLVDGLCKS 362

Query: 339 KRVHEVEKFFHEM----IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
            ++      F EM    + N    T L     I  L  A+  + A+ ++N I + G +P 
Sbjct: 363 GKLEGGCMLFDEMERSGVANSQTRTRL-----IFHLCKANRVDEAVSLFNAIRKEG-MPH 416

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEM 421
             + N ++  L   G++++ +   +EM
Sbjct: 417 PYAYNSIISALIKSGKVNEGQAVYQEM 443



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 157/384 (40%), Gaps = 51/384 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++++++ L K G   Q  +  +    +G  + + T+ +I D      K  EAV   + ++
Sbjct: 2   FSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKIT 61

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKE 230
            +G    +   N+LL+ +C+      R  E ++ ++KIVD    PD  ++  L++G  K+
Sbjct: 62  ANGCTPTIATYNALLNGLCKM----GRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKK 117

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
               EA K F EM  R        + Y   +  L++  ++ +A    + M  + C P + 
Sbjct: 118 KRSFEAYKLFKEMASR--GLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVV 175

Query: 291 FFSNALDILVKLNDSTHAVQLWDIM-------------MVFHG----------------- 320
             S  +D L K      AV+++  M              + HG                 
Sbjct: 176 TLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQM 235

Query: 321 --AF--PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
             AF  PD++TYN++ + L K+  V     FF EM++   +P        I+    A   
Sbjct: 236 KKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNT 295

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVT 432
           + A  +++ +  +   P   +   L+ GL    +L+    + + M  R       +Y   
Sbjct: 296 DAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSL 355

Query: 433 MHKLKKAFYNESRSMRDIFDSLER 456
           +  L K+   E   M  +FD +ER
Sbjct: 356 VDGLCKSGKLEGGCM--LFDEMER 377


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 160/350 (45%), Gaps = 11/350 (3%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
            +G RLS  ++ ++++ + K G        +R ++   +  ++  ++ I D  C     D
Sbjct: 156 AQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVD 215

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAIL 223
           EA   +  M   G+  DVV  + L+S  C    Q +RA++ LN  V + ++PD  ++ IL
Sbjct: 216 EAYDLYTEMVGKGISPDVVTYSILVSGFC-IVGQLNRAIDLLNEMVLENINPDIYTYTIL 274

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++   KEG V+EA      MV+        V+ Y T +       +V+ A +    M   
Sbjct: 275 VDALCKEGKVKEAENVLAVMVK--ACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQM 332

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P +  +S  ++ L K+     A+ L++ +       PD++TY  + +CL K+ R+  
Sbjct: 333 GVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQ-KNMVPDTVTYTSLIDCLCKSGRISY 391

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
           V   F EM+     P  +     I  L      + AI ++N + +  I P   +   LL 
Sbjct: 392 VWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLD 451

Query: 404 GLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKL-KKAFYNESRSMR 448
           GL  +GRL +   F +++L +     +  Y V ++ L K+   +E+ +++
Sbjct: 452 GLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQ 501



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 127/312 (40%), Gaps = 7/312 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T   I + +C  G+   A      +   G + + + +N+L+  +C  E +   AL F ++
Sbjct: 95  TLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLC-LEGKVKEALRFHDK 153

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           V  +     G S+ IL+ G  K G    A +     +ER+   P +V+ Y   +  L + 
Sbjct: 154 VLAQGFRLSGISYGILINGVCKIGETRAAIRLL-RRIERWSIRP-NVVIYSMIIDRLCKD 211

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
             VDEA      M G+   P +  +S  +     +     A+ L +  MV     PD  T
Sbjct: 212 TLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLN-EMVLENINPDIYT 270

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y ++ + L K  +V E E     M+K       +  +T +      +E   A  ++  + 
Sbjct: 271 YTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMT 330

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR-- 445
           + G+ P     + ++ GL  + R+ +     EE+  + ++   VT   L        R  
Sbjct: 331 QMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRIS 390

Query: 446 SMRDIFDSLERR 457
            + D+FD +  R
Sbjct: 391 YVWDLFDEMLDR 402


>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Brachypodium distachyon]
          Length = 746

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 134/311 (43%), Gaps = 7/311 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++++  +   AG+ D+AV     M + GV     A N +L A+ R  + T  A  F   
Sbjct: 316 TYSTVVSALADAGRVDDAVALVHEMVVDGVVA-AEAFNPVLGAMLRTGDVTGAAKLFSFM 374

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K   P   ++ +LL G    G  + A      M ER E  P  V+ Y   +  L+R  
Sbjct: 375 QLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRM-ERAEVVPG-VMTYGAVVDGLVRCG 432

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           ++++A K +  M+ +   P    FS  +    KL +   A ++WD M V  G  P+ + Y
Sbjct: 433 RLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTM-VAAGIKPNVVLY 491

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           + + + L +  ++ E E  F EMI+ +  P  +  ++ +       +   A+  W  +L 
Sbjct: 492 SAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFWEDMLR 551

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES---R 445
            G  P   + + L+ GL N+GR  D     + ML R  +   +    + K F        
Sbjct: 552 IGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTSMIKGFCVSGMVDA 611

Query: 446 SMRDIFDSLER 456
            +R  +D L R
Sbjct: 612 GLRLFYDMLAR 622



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/251 (19%), Positives = 108/251 (43%), Gaps = 3/251 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  +VD L + GR E     +  M+  G++     F+ +   +C  G+ D A   +D M 
Sbjct: 421 YGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMV 480

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G++ +VV  ++++  + R    T   L F   ++    P+  +++ ++ G+ + G+  
Sbjct: 481 AAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSS 540

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A  +F E + R    P  V  Y   +  L    +  +A+   + M G  C P    +++
Sbjct: 541 QA-LSFWEDMLRIGCTPNAV-TYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTS 598

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +            ++L+  M+      PD + YN++ + L++ K +       ++M+  
Sbjct: 599 MIKGFCVSGMVDAGLRLFYDMLARGDTHPDVICYNVLLDGLLRAKDLPRAMDLLNQMLDQ 658

Query: 355 EWQPTPLNCAT 365
              P  + C T
Sbjct: 659 ACDPDTVTCNT 669



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/246 (20%), Positives = 108/246 (43%), Gaps = 18/246 (7%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ M+D L + G+  +     R M E   V ++ T++S+   Y   G   +A+  ++ M 
Sbjct: 491 YSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFWEDML 550

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   + V  + L++ +C         + + + + +   PD  ++  +++G+   G V+
Sbjct: 551 RIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTSMIKGFCVSGMVD 610

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP---TLKF 291
              + F +M+ R + +P+ V+ Y   L  L+R K +  A+  L  M  + C P   T   
Sbjct: 611 AGLRLFYDMLARGDTHPD-VICYNVLLDGLLRAKDLPRAMDLLNQMLDQACDPDTVTCNT 669

Query: 292 FSNALDI-----------LVKLNDSTHAVQLWDIMMVFHGAF--PDSLTYNMIFECLIKN 338
           F   +++           +V+L +        +++MV    +  P++    M+   + + 
Sbjct: 670 FLREIEVGQKGQEFLEGLVVRLCNRKRNKAAGEVLMVMLAKYIVPEAAVLEMVVRGVCRR 729

Query: 339 KRVHEV 344
           KRV  V
Sbjct: 730 KRVWRV 735



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 10/231 (4%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF---LITLIRGKQVD 271
           PD  +++ ++      G V++A     EMV       + V+A E F   L  ++R   V 
Sbjct: 312 PDKFTYSTVVSALADAGRVDDAVALVHEMVV------DGVVAAEAFNPVLGAMLRTGDVT 365

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
            A K    M+ + C P+   ++  L  L+    +  A+ +   M       P  +TY  +
Sbjct: 366 GAAKLFSFMQLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERAE-VVPGVMTYGAV 424

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
            + L++  R+ +  K   EM      P     +  IT      E + A  +W+ ++  GI
Sbjct: 425 VDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGI 484

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
            P     + ++ GL   G++++      EM+  + +   +T   + + ++ 
Sbjct: 485 KPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQ 535


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 163/411 (39%), Gaps = 12/411 (2%)

Query: 19  SSSSTTTSPTSHNP-HRPTRPRFPTH-LDAPYISSSARIICEILA--HASSDDIESALAC 74
           +S + TT      P H  T P    H  DA   S     +  IL   H     +E AL  
Sbjct: 41  TSPNGTTQRGGFGPIHLKTTPHESAHDRDADEFSVDVEKVYRILRKFHTRVPKLELALQE 100

Query: 75  TGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQM 132
           +G+I    L   VL    D+ +    FF WA +  G R S   +  M+  LGK  +F  +
Sbjct: 101 SGVIMRSGLPERVLSRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKTLGKMRQFGAV 160

Query: 133 WNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
           W  +  M+++   +L+   F  +   +       +AV   D M  +G E D      LL 
Sbjct: 161 WALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLD 220

Query: 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           A+C+       A      ++   +P+   F  LL GW +EG + EA     ++ E   + 
Sbjct: 221 ALCKN-GSVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEA-GFE 278

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ ++ Y   L    +  ++ +A   L  MK  NC P    F+  +    K      A++
Sbjct: 279 PD-IVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMR 337

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           ++  M    G   D +TY  +     K     +  +   +MI+    P+ L+    +   
Sbjct: 338 IFTEMQG-SGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAH 396

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
              +E E  +E+   + + G +P     N ++  +  LG L +  R   EM
Sbjct: 397 EKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEM 447



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 155/372 (41%), Gaps = 46/372 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           Y +  ++D L KNG  ++  +    M+     +L  F S+   +C  GK  EA      +
Sbjct: 213 YVFGCLLDALCKNGSVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQI 272

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G E D+V  N+LL     Q  +   A + L  +KK+   P+  SF IL++ + K   
Sbjct: 273 KEAGFEPDIVVYNNLLGGYA-QAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEK 331

Query: 233 VEEANKTFGEM---------------VERF-EW------------------NPEHVLAYE 258
           ++EA + F EM               +  F +W                  +P   L+Y 
Sbjct: 332 MDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQ-LSYL 390

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
             ++   + ++++E ++ +  M+   C P L  ++  + ++ KL D   AV+LW  M   
Sbjct: 391 CIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQA- 449

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL--NCATAITMLLDADEP 376
            G  P   TY ++    +    + E   +F EM++      P           LL A++ 
Sbjct: 450 GGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKL 509

Query: 377 EIAIEIWNYILENGILPLEASANELLV-GLRNLGRLSDVRRFAEEMLNRRIL----IYEV 431
           E+A  +W+ +   G   L  SA  + +  L + G + +   +  +M++  ++     +  
Sbjct: 510 EMAKNMWSCMTTKGC-ELNVSAWTIWIHALFSNGHVKEACSYCLDMMDADLMPQPDTFAK 568

Query: 432 TMHKLKKAFYNE 443
            M  LKK F+ +
Sbjct: 569 LMRGLKKLFHRQ 580


>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 101/428 (23%), Positives = 170/428 (39%), Gaps = 16/428 (3%)

Query: 19  SSSSTTTSPTSHNP-HRPTRPRFPTH-LDAPYISSSARIICEILA--HASSDDIESALAC 74
           +S + TT      P H  T P    H  DA   S     +  IL   H     +E AL  
Sbjct: 64  TSPNGTTQRGGFGPIHLKTTPHESAHDRDADEFSVDVEKVYRILRKFHTRVPKLELALQE 123

Query: 75  TGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQM 132
           +G+I    L   VL    D+ +    FF WA +  G R S   +  M+  LGK  +F  +
Sbjct: 124 SGVIMRSGLPERVLSRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKTLGKMRQFGAV 183

Query: 133 WNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
           W  +  M+++   +L+   F  +   +       +AV   D M  +G E D      LL 
Sbjct: 184 WALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLD 243

Query: 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           A+C+       A      ++   +P+   F  LL GW +EG + EA     ++ E   + 
Sbjct: 244 ALCKN-GSVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEA-GFE 301

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ ++ Y   L    +  ++ +A   L  MK  NC P    F+  +    K      A++
Sbjct: 302 PD-IVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMR 360

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           ++  M    G   D +TY  +     K     +  +   +MI+    P+ L+    +   
Sbjct: 361 IFTEMQ-GSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAH 419

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRI 426
              +E E  +E+   + + G +P     N ++  +  LG L +  R   EM    LN  +
Sbjct: 420 EKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGL 479

Query: 427 LIYEVTMH 434
             Y + +H
Sbjct: 480 DTYILMVH 487



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 155/372 (41%), Gaps = 46/372 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           Y +  ++D L KNG  ++  +    M+     +L  F S+   +C  GK  EA      +
Sbjct: 236 YVFGCLLDALCKNGSVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQI 295

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G E D+V  N+LL     Q  +   A + L  +KK+   P+  SF IL++ + K   
Sbjct: 296 KEAGFEPDIVVYNNLLGGYA-QAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEK 354

Query: 233 VEEANKTFGEM---------------VERF-EW------------------NPEHVLAYE 258
           ++EA + F EM               +  F +W                  +P   L+Y 
Sbjct: 355 MDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQ-LSYL 413

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
             ++   + ++++E ++ +  M+   C P L  ++  + ++ KL D   AV+LW  M   
Sbjct: 414 CIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQA- 472

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL--NCATAITMLLDADEP 376
            G  P   TY ++    +    + E   +F EM++      P           LL A++ 
Sbjct: 473 GGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKL 532

Query: 377 EIAIEIWNYILENGILPLEASANELLV-GLRNLGRLSDVRRFAEEMLNRRIL----IYEV 431
           E+A  +W+ +   G   L  SA  + +  L + G + +   +  +M++  ++     +  
Sbjct: 533 EMAKNMWSCMTTKGC-ELNVSAWTIWIHALFSNGHVKEACSYCLDMMDADLMPQPDTFAK 591

Query: 432 TMHKLKKAFYNE 443
            M  LKK F+ +
Sbjct: 592 LMRGLKKLFHRQ 603


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 139/333 (41%), Gaps = 5/333 (1%)

Query: 96  SSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           S AV+       RG       + ++VD L K  +    W  +R M + G + +L T+ S+
Sbjct: 208 SQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSL 267

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
               C A +  +A+     M+  G   +VV   +L+  +C+            + + K  
Sbjct: 268 LHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG 327

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD   + +L+ G  K   V+E+       V      P+ V+ Y + +  L R  ++DEA
Sbjct: 328 TPDLMIYNMLINGLCKADQVDESIALLRRAVS-GGIKPD-VVTYSSVIYGLCRSNRLDEA 385

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
            + L  +K   C P +  +S  +D L K      A  L+++ M   G   D +TY+ + +
Sbjct: 386 CRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEV-MAGDGCDADVVTYSTLID 444

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L K  RV E       M++    P+ +   + I  L D +  + AIE+   +  +   P
Sbjct: 445 GLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAP 504

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
              + N L+ G+  + R+       E+   R +
Sbjct: 505 SAVTYNILIHGMCRMERVDSAVVLLEQAKARCV 537



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 155/380 (40%), Gaps = 48/380 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKY 163
           R + L P  +  ++++D L K  R        R M+  G+++    + ++        + 
Sbjct: 36  RSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRL 95

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
           D+A+     M  HG E +VV  NSL+  +C+  N+  RA E    +K +   P   ++  
Sbjct: 96  DQALAILHEMRDHGCEPNVVTYNSLIDGLCKN-NEPDRAQELFEHMKSVECSPSMVTYNT 154

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPE-----HVLAYETFLITLIRGKQVDEALKFL 277
           LL+G  + G +E A   F EM++R   + +     +V+ Y   +  L +  +V +A++ L
Sbjct: 155 LLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELL 214

Query: 278 RVMKGENCFPTLKFFSNALDILVK-----------------------------LNDSTHA 308
             MK   C P +  ++  +D L K                             L+    A
Sbjct: 215 ESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRA 274

Query: 309 VQLWDIM-----MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
            ++ D +     M   G  P+ +TY  + + L K  RV +      +MI     P  +  
Sbjct: 275 RRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIY 334

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
              I  L  AD+ + +I +    +  GI P   + + ++ GL    RL +  R    + +
Sbjct: 335 NMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKS 394

Query: 424 RR----ILIYEVTMHKLKKA 439
           R     +++Y   +  L KA
Sbjct: 395 RGCPPDVILYSTLIDGLCKA 414



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 147/337 (43%), Gaps = 17/337 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM- 173
           +N ++D L KN   ++       MK  +   S+ T+ ++ D     GK + A+  F  M 
Sbjct: 117 YNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEML 176

Query: 174 --SMHGVEQ----DVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEG 226
               H ++     +V+  + L+  +C+  N+ S+A+E L  +K +   PD  ++ IL++G
Sbjct: 177 DRRSHDMDDRCSPNVITYSVLIDGLCKA-NRVSQAVELLESMKARGCSPDVITYTILVDG 235

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             KE  V  A +   EM++       +++ Y + L  L R ++V +AL  +R M    C 
Sbjct: 236 LCKESKVAAAWEVLREMLD--AGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCT 293

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P +  +   +D L K+     A  +    M+  G  PD + YNM+   L K  +V E   
Sbjct: 294 PNVVTYGTLIDGLCKVGRVKDACAML-ADMIDKGGTPDLMIYNMLINGLCKADQVDESIA 352

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
                +    +P  +  ++ I  L  ++  + A  +  Y+   G  P     + L+ GL 
Sbjct: 353 LLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLC 412

Query: 407 NLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKA 439
             G++ +     E M     +  ++ Y   +  L KA
Sbjct: 413 KAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKA 449



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 103/215 (47%), Gaps = 11/215 (5%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           ++++ D  C AGK DEA   ++VM+  G + DVV  ++L+  +C+        L     V
Sbjct: 404 YSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMV 463

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           +    P   ++  L++G     +++EA +   EM ER    P  V  Y   +  + R ++
Sbjct: 464 RMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEM-ERSNCAPSAV-TYNILIHGMCRMER 521

Query: 270 VDEALKFLR------VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           VD A+  L       V  G     T+  +S+ +D L K      A+  +   M+ +G  P
Sbjct: 522 VDSAVVLLEQAKARCVAAGGTALDTIA-YSSLIDGLCKAGRVAEALDYFQ-EMIDNGVIP 579

Query: 324 DSLTYNMIFECLIKNKRVHEVEKF-FHEMIKNEWQ 357
           D +TY+++ E L K+K +HE+      +M++  ++
Sbjct: 580 DHITYSILLEGLKKSKDLHELRHLVLDQMVQLGYR 614



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V  Y   L    RG ++D+A +    M+ +N  P +   S  +D L K   S  A++ + 
Sbjct: 9   VYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFR 68

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
            M    G   D++ Y  +   L K KR+ +     HEM  +  +P  +   + I  L   
Sbjct: 69  AMQ-GSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKN 127

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR-------- 425
           +EP+ A E++ ++      P   + N LL GL   G+L       +EML+RR        
Sbjct: 128 NEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRC 187

Query: 426 ---ILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 457
              ++ Y V +  L KA  N      ++ +S++ R
Sbjct: 188 SPNVITYSVLIDGLCKA--NRVSQAVELLESMKAR 220



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 11/183 (6%)

Query: 98  AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A D +   AG G       ++ ++D L K GR ++    +  M   G   S  T+ S+  
Sbjct: 420 AFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIK 479

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVD 214
             C     DEA+   + M         V  N L+  +CR E   S A+  L + K + V 
Sbjct: 480 GLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDS-AVVLLEQAKARCVA 538

Query: 215 PDGD-----SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
             G      +++ L++G  K G V EA   F EM++     P+H+  Y   L  L + K 
Sbjct: 539 AGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVI-PDHI-TYSILLEGLKKSKD 596

Query: 270 VDE 272
           + E
Sbjct: 597 LHE 599


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 136/277 (49%), Gaps = 18/277 (6%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +V+ + ++G      + +R M+E  V + + T+++I DS C  G  D A+  F  M
Sbjct: 185 TYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 244

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G++  VV  NSL+  +C+       AL   + V + + P+  +F +LL+ + KEG +
Sbjct: 245 ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKL 304

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EAN+ + EM+ R   +P +++ Y T +       ++ EA   L +M    C P +  F+
Sbjct: 305 QEANELYKEMITR-GISP-NIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFT 362

Query: 294 NALD--ILVKLNDSTHAVQLWDIMMVF-----HGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           + +    +VK  D        D M VF      G   +++TY+++ +   ++ ++   E+
Sbjct: 363 SLIKGYCMVKRVD--------DGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEE 414

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
            F EM+ +   P  +     +  L D  + E A+EI+
Sbjct: 415 LFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIF 451



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 143/316 (45%), Gaps = 6/316 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  N+M++   +  +    ++ + +VMK        TF ++       GK  EAV+  D 
Sbjct: 114 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 173

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M  +G + DVV  NS+++ ICR    TS AL+ L ++ ++ V  D  +++ +++   ++G
Sbjct: 174 MVENGCQPDVVTYNSIVNGICRS-GDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 232

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++ A   F EM    +     V+ Y + +  L +  + ++    L+ M      P +  
Sbjct: 233 CIDAAISLFKEM--ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVIT 290

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           F+  LD+ VK      A +L+   M+  G  P+ +TYN + +      R+ E       M
Sbjct: 291 FNVLLDVFVKEGKLQEANELYK-EMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 349

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           ++N+  P  +   + I         +  ++++  I + G++    + + L+ G    G++
Sbjct: 350 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 409

Query: 412 SDVRRFAEEMLNRRIL 427
                  +EM++  +L
Sbjct: 410 KLAEELFQEMVSHGVL 425



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 82/182 (45%), Gaps = 3/182 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   + RG   +   ++++V    ++G+ +      + M   GVL  + T+  + D  C 
Sbjct: 381 FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCD 440

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            GK ++A+  F+ +    ++  +V   +++  +C+          F +   K V P+  +
Sbjct: 441 NGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 500

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + +++ G  K+G++ EAN    +M E  + N  +   Y T +   +R   +  + K +  
Sbjct: 501 YTVMISGLCKKGSLSEANILLRKMEE--DGNAPNDCTYNTLIRAHLRDGDLTASAKLIEE 558

Query: 280 MK 281
           MK
Sbjct: 559 MK 560


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 140/289 (48%), Gaps = 18/289 (6%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAG 161
           R    G +     +N +V+ + ++G     ++ +R M+E  V + + T+++I DS C  G
Sbjct: 183 RMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDG 242

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D A+  F  M   G++  VV  NSL+  +C+       AL   + V + + P+  +F 
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFN 302

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +LL+ + KEG ++EAN+ + EM+ R   +P +++ Y T +       ++ EA   L +M 
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITR-GISP-NIITYNTLMDGYCMQNRLSEANNMLDLMV 360

Query: 282 GENCFPTLKFFSNALD--ILVKLNDSTHAVQLWDIMMVF-----HGAFPDSLTYNMIFEC 334
              C P +  F++ +    +VK  D        D M VF      G   +++TY+++ + 
Sbjct: 361 RNKCSPDIVTFTSLIKGYCMVKRVD--------DGMKVFRNISKRGLVANAVTYSILVQG 412

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
             ++ ++   E+ F EM+ +   P  +     +  L D  + E A+EI+
Sbjct: 413 FCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIF 461



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 144/316 (45%), Gaps = 6/316 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  N+M++   +  +    ++ + +VMK        TF ++ +  C  GK  +AV+  D 
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDR 183

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M  +G + D+V  NS+++ ICR    TS A + L ++ ++ V  D  +++ +++   ++G
Sbjct: 184 MVENGCQPDMVTYNSIVNGICRS-GDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDG 242

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++ A   F EM    +     V+ Y + +  L +  + ++    L+ M      P +  
Sbjct: 243 CIDAAISLFKEM--ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVIT 300

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           F+  LD+ VK      A +L+   M+  G  P+ +TYN + +      R+ E       M
Sbjct: 301 FNVLLDVFVKEGKLQEANELYK-EMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           ++N+  P  +   + I         +  ++++  I + G++    + + L+ G    G++
Sbjct: 360 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 419

Query: 412 SDVRRFAEEMLNRRIL 427
                  +EM++  +L
Sbjct: 420 KLAEELFQEMVSHGVL 435



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 82/182 (45%), Gaps = 3/182 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   + RG   +   ++++V    ++G+ +      + M   GVL  + T+  + D  C 
Sbjct: 391 FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCD 450

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            GK ++A+  F+ +    ++  +V   +++  +C+          F +   K V P+  +
Sbjct: 451 NGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 510

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + +++ G  K+G++ EAN    +M E  + N  +   Y T +   +R   +  + K +  
Sbjct: 511 YTVMISGLCKKGSLSEANILLRKMEE--DGNAPNDCTYNTLIRAHLRDGDLTASAKLIEE 568

Query: 280 MK 281
           MK
Sbjct: 569 MK 570


>gi|224117122|ref|XP_002317482.1| predicted protein [Populus trichocarpa]
 gi|222860547|gb|EEE98094.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 160/384 (41%), Gaps = 45/384 (11%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           T DLV +VL+        A  FF W  +     LS   +N ++D+LG+  RFE++   + 
Sbjct: 2   TQDLVLKVLKRHRSDWKPAYIFFNWVSKEGTISLSSCVYNEILDILGRMRRFEELTLVLD 61

Query: 138 VM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
            M K +G +   T+  + + Y GA   +EA+ +F+     G+E D+V+   LL  +CR +
Sbjct: 62  EMSKREGFVDEDTYRVLVNRYAGAHMVEEAIGAFNKRRELGLELDLVSFQKLLMYLCRYK 121

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
                A   L+        D  +  I+L GW   GNV EA + + +++   +  P+ V  
Sbjct: 122 -HVDVAETLLHSKGHEFGVDIKTMNIVLNGWCVLGNVREAKRFWKDIIAS-KCKPD-VFT 178

Query: 257 YETFLITLI-RG----------------------------------KQVDEALKFLRVMK 281
           Y TF+  L  +G                                  K+V EAL     MK
Sbjct: 179 YGTFIKALTNKGKLGTAMKLYEAMWKMQCKPDVVICNCVIDALCFKKRVPEALAVFEGMK 238

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA-FPDSLTYNMIFECLIKNKR 340
              C P +  +++ +  + K+       +L D M    G+  PD +T+N + + L   K+
Sbjct: 239 ERGCIPNVATYNSLIKHMCKIGRMEKVYELLDEMQEKKGSCMPDEITFNYLLKSL---KK 295

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
             EV      M  N  +     C   + +  D D  E     W  + +NG+     S   
Sbjct: 296 PEEVAGVLERMKINGCKMNNDTCNLLLKLHADWDSEEKVRYTWEEMEKNGLGLDRRSYTI 355

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNR 424
           ++  L + GR+ D  R+  EM N+
Sbjct: 356 MIHWLYDKGRVEDALRYFGEMENK 379



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 8/212 (3%)

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEAL 274
           D D++ +L+  +     VEEA    G   +R E   E  +++++  L+ L R K VD A 
Sbjct: 71  DEDTYRVLVNRYAGAHMVEEA---IGAFNKRRELGLELDLVSFQKLLMYLCRYKHVDVAE 127

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW-DIMMVFHGAFPDSLTYNMIFE 333
             L   KG      +K  +  L+    L +   A + W DI  +     PD  TY    +
Sbjct: 128 TLLHS-KGHEFGVDIKTMNIVLNGWCVLGNVREAKRFWKDI--IASKCKPDVFTYGTFIK 184

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L    ++    K +  M K + +P  + C   I  L        A+ ++  + E G +P
Sbjct: 185 ALTNKGKLGTAMKLYEAMWKMQCKPDVVICNCVIDALCFKKRVPEALAVFEGMKERGCIP 244

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
             A+ N L+  +  +GR+  V    +EM  ++
Sbjct: 245 NVATYNSLIKHMCKIGRMEKVYELLDEMQEKK 276


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 143/322 (44%), Gaps = 6/322 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F+    +G   S  ++ +++D L KN  F+        MK +GV +   T+  + D  C 
Sbjct: 356 FYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 415

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
            G  DEAV+  + MS  G++ D+V  ++L++  C+   +   A E + R+ ++ + P+G 
Sbjct: 416 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKV-GRFKTAKEIVCRIYRVGLSPNGI 474

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            ++ L+    + G ++EA + +  M+   E +      +   + +L +  +V EA +F+R
Sbjct: 475 IYSTLIYNCCRMGCLKEAIRIYEAMI--LEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMR 532

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M  +   P    F   ++      +   A  ++D M    G  P   TY  + + L K 
Sbjct: 533 CMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKV-GHHPTFFTYGSLLKGLCKG 591

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
             + E EKF   +         +   T +T +  +     A+ ++  +++  ILP   + 
Sbjct: 592 GHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTY 651

Query: 399 NELLVGLRNLGRLSDVRRFAEE 420
             L+ GL   G+      FA+E
Sbjct: 652 TSLISGLCRKGKTVIAILFAKE 673



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 135/308 (43%), Gaps = 4/308 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++++VL   G FE+    ++ M++ G   ++ T+ ++   YC  G++  A+   D M 
Sbjct: 196 FNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMK 255

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             GV+ DV   N L+  +CR        L   +  K+++ P+  ++  L+ G+  EG V 
Sbjct: 256 SKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVL 315

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A++   EM+  F  +P HV  +   +   I      EALK   +M+ +   P+   +  
Sbjct: 316 IASQLLNEMLS-FGLSPNHV-TFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGV 373

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            LD L K N      + + + M  +G     +TY  + + L KN  + E     +EM K+
Sbjct: 374 LLDGLCK-NAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKD 432

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
              P  +  +  I         + A EI   I   G+ P     + L+     +G L + 
Sbjct: 433 GIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEA 492

Query: 415 RRFAEEML 422
            R  E M+
Sbjct: 493 IRIYEAMI 500



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 121/320 (37%), Gaps = 38/320 (11%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G     + +N++V  L K G+  +    +R M  DG+L +  +F  + + Y  +G+  +A
Sbjct: 503 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKA 562

Query: 167 VMSFDVM---------------------------------SMHGVEQ--DVVAVNSLLSA 191
              FD M                                 S+H V    D V  N+LL+A
Sbjct: 563 FSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTA 622

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           +C+  N       F   V++ + PD  ++  L+ G  ++G    A     E   R    P
Sbjct: 623 MCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLP 682

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
             V+ Y  F+  + +  Q    + F   M      P +   +  +D   ++        L
Sbjct: 683 NKVM-YTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDL 741

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
              M   +G  P+  TYN++     K K V      +  +I N   P  L C + +  + 
Sbjct: 742 LPEMGNQNGG-PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGIC 800

Query: 372 DADEPEIAIEIWNYILENGI 391
           +++  EI ++I    +  G+
Sbjct: 801 ESNMLEIGLKILKAFICRGV 820



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 55/278 (19%), Positives = 110/278 (39%), Gaps = 7/278 (2%)

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
           Y   G   +++  F +M ++G    V   N++L ++ +     S        +K+ + PD
Sbjct: 133 YLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPD 192

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +F IL+     EG+ E+++    +M E+  + P  ++ Y T L    +  +   A++ 
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKM-EKSGYAPT-IVTYNTVLHWYCKKGRFKAAIEL 250

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM--VFHGAFPDSLTYNMIFEC 334
           L  MK +     +  ++  +  L + N       L   M   + H   P+ +TYN +   
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIH---PNEVTYNTLING 307

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
                +V    +  +EM+     P  +     I   +     + A++++  +   G+ P 
Sbjct: 308 FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPS 367

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
           E S   LL GL         R F   M    + +  +T
Sbjct: 368 EVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRIT 405



 Score = 45.8 bits (107), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 86/210 (40%), Gaps = 5/210 (2%)

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           FG ++  +     +   Y+  +   +R   + ++L+  R+M      P++ +  NA  IL
Sbjct: 109 FGALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSV-YTCNA--IL 165

Query: 300 VKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
             +  S   V +W  +  M+     PD  T+N++   L       +      +M K+ + 
Sbjct: 166 GSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYA 225

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
           PT +   T +         + AIE+ +++   G+     + N L+  L    R++     
Sbjct: 226 PTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLL 285

Query: 418 AEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
             +M  R I   EVT + L   F NE + +
Sbjct: 286 LRDMRKRMIHPNEVTYNTLINGFSNEGKVL 315



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 83/203 (40%), Gaps = 3/203 (1%)

Query: 149  TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            TF  +    C  G+ + A     VM+  G+  D    ++++S + R        +     
Sbjct: 826  TFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEM 885

Query: 209  VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K+ + P+   +  L+ G  + G+++ A     EM+      P   +A    +  L +  
Sbjct: 886  SKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPN--VAESAMVRALAKCG 943

Query: 269  QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            + DEA   LR M      PT+  F+  + +  K  +   A++L  ++M   G   D ++Y
Sbjct: 944  KADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALEL-RVVMSNCGLKLDLVSY 1002

Query: 329  NMIFECLIKNKRVHEVEKFFHEM 351
            N++   L     +    + + EM
Sbjct: 1003 NVLITGLCAKGDMALAFELYEEM 1025


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 152/333 (45%), Gaps = 16/333 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +++ L   GRF         M+  G L+   T+  I    C  G  ++A++ F+ M
Sbjct: 375 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 434

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGN 232
              G    VV  N+L++    + N  + A   L+ +K+   +PD  ++  L+ G+ K G 
Sbjct: 435 LKMGPLPTVVTYNTLINGYLTKGN-VNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGK 493

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +E A+  F EMVE    NP  V +Y   +    +  +VD AL  L+ M+   C P ++ +
Sbjct: 494 LESASFYFQEMVE-CGLNPNPV-SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESY 551

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  ++ L K N  + A ++ D  MV  G  P+ +TY  + + L +N R     K FH+M 
Sbjct: 552 NAVINGLSKENRFSEAEKICD-KMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDME 610

Query: 353 KNEWQPTPLNCATAITMLLD---ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           K +  P     ++ I  L     ADE EI ++    +   G+ P E +   L+ G   LG
Sbjct: 611 KRKCLPNLYTYSSLIYGLCQEGKADEAEILLK---EMERKGLAPDEVTFTSLIDGFVVLG 667

Query: 410 RLSD----VRRFAEEMLNRRILIYEVTMHKLKK 438
           R+      +RR  +         Y V +  L+K
Sbjct: 668 RIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQK 700



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 139/321 (43%), Gaps = 10/321 (3%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G G   S Y+ N ++  L K    E   N  + M   G+  SL TF ++ +     GK 
Sbjct: 155 SGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV 214

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
            EA +    +  + +  DV    SL+   CR  N       F   VK+  DP+  +++ L
Sbjct: 215 REAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 274

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G   EG V+EA     EM+E+    P  V  Y   +  L   +  +EA++ +  MK  
Sbjct: 275 INGLCNEGRVDEALDMLEEMIEK-GIEPT-VYTYTLPITALCAIEHEEEAIELVARMKKR 332

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
            C P ++ ++  +  L +L     A+ L+  M+   G  P+++TYN +   L    R   
Sbjct: 333 GCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLK-EGLVPNTVTYNALINELCVGGRFST 391

Query: 344 VEKFFHEMIKNEWQPTPLNCAT---AITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
             K FH M   E   +  N  T    I  L    + E A+ ++  +L+ G LP   + N 
Sbjct: 392 ALKIFHWM---EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNT 448

Query: 401 LLVGLRNLGRLSDVRRFAEEM 421
           L+ G    G +++  R  + M
Sbjct: 449 LINGYLTKGNVNNAARLLDLM 469



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/356 (19%), Positives = 141/356 (39%), Gaps = 36/356 (10%)

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           R++KE    +  T++++ +  C  G+ DEA+   + M   G+E  V      ++A+C  E
Sbjct: 258 RMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIE 317

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER---------- 246
           ++           K+   P+  ++  L+ G  + G +E A   + +M++           
Sbjct: 318 HEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYN 377

Query: 247 ------------------FEWNPEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGE 283
                             F W   H        Y   +  L  G  +++A+     M   
Sbjct: 378 ALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKM 437

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              PT+  ++  ++  +   +  +A +L D+M   +G  PD  TYN +     K  ++  
Sbjct: 438 GPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKE-NGCEPDEWTYNELVSGFSKWGKLES 496

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
              +F EM++    P P++    I       + +IA+ +   + E G  P   S N ++ 
Sbjct: 497 ASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVIN 556

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLERR 457
           GL    R S+  +  ++M+ + +L   +T   L        R+     IF  +E+R
Sbjct: 557 GLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKR 612



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 12/254 (4%)

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI-----LLEGWEKEGNVEEANKTFGE 242
           L+   CR E +  R  +FLN +  +    G  F++     LL    K   VE A   + +
Sbjct: 133 LMIKACRNEEEIRRVADFLNEISGM----GFGFSLYSCNTLLIQLAKFEMVEGARNLYKQ 188

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M+      P  +L + T +  L +  +V EA   L  +   +  P +  +++ +    + 
Sbjct: 189 MLNS-GIQPS-LLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRN 246

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
            +   A  ++D  MV  G  P+S+TY+ +   L    RV E      EMI+   +PT   
Sbjct: 247 RNLDLAFGVFD-RMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYT 305

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
               IT L   +  E AIE+   + + G  P   +   L+ GL  LG+L        +ML
Sbjct: 306 YTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKML 365

Query: 423 NRRILIYEVTMHKL 436
              ++   VT + L
Sbjct: 366 KEGLVPNTVTYNAL 379


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 152/344 (44%), Gaps = 7/344 (2%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           LV  + ++S  + + AV F    G G +      N ++    + G   Q    +  M   
Sbjct: 53  LVIFLCKMSRATDALAV-FQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAH 111

Query: 143 G-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
             VL + T++ + D+   AG+  +A+  F  M   G   D V  N L+S + +Q  +   
Sbjct: 112 AFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQ-GKVDE 170

Query: 202 ALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           ALE L  + +K + PD  ++ I+++     G  E+A   FG M++R + +P+ V+ Y T 
Sbjct: 171 ALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFG-MMKRRKHSPD-VVTYNTL 228

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           L  L + ++ DEA      M+   C P L  F   +D L K      A++     +V  G
Sbjct: 229 LNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALE-QSARLVKMG 287

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             P+S  YN +     ++ +V +  + F +MI+    P  +     +          +A+
Sbjct: 288 HVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAM 347

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           E+   ++  G  P  A+ N L+  L   G++ D     +EM+ +
Sbjct: 348 ELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAK 391



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 134/314 (42%), Gaps = 13/314 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY----CGAGKYDEAVMSF 170
           A+N ++    K G  ++  +  R +K++G  S    A  FD+     C   +  +A+  F
Sbjct: 13  AYNTLIAGYCKAGDGDRALDMFRRLKQEG--SCKPNAVSFDTLVIFLCKMSRATDALAVF 70

Query: 171 DVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
             M   G++ DV   N+L+   CR     Q  R L  +     ++D    +++ L++   
Sbjct: 71  QEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVF--TYSYLMDALG 128

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G   +A + F  M ++    P+ V+ Y   +  L +  +VDEAL+ L  M  +   P 
Sbjct: 129 KAGRAAKALEVFSNM-QKAGCMPDTVV-YNVLISCLGKQGKVDEALELLEDMNRKGIMPD 186

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
            + ++  +D+L        A   +  MM      PD +TYN +   L K +R  E    F
Sbjct: 187 CRTYNIVIDVLSSCGRYEKAYSFFG-MMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLF 245

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            EM  N+  P      T I  L  A   E A+E    +++ G +P     N L+ G    
Sbjct: 246 DEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRS 305

Query: 409 GRLSDVRRFAEEML 422
           G++       ++M+
Sbjct: 306 GQVDKGYELFQDMI 319



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 103/246 (41%), Gaps = 12/246 (4%)

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANK 238
           DVVA N+L++  C+      RAL+   R+K+     P+  SF  L+    K     +A  
Sbjct: 10  DVVAYNTLIAGYCK-AGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALA 68

Query: 239 TFGEMVE---RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
            F EM+    + + N  + L + T  + ++R     +A + L  M        +  +S  
Sbjct: 69  VFQEMLGAGLQADVNVCNTLIHCTCRLGMLR-----QARRLLHHMTAHAFVLDVFTYSYL 123

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           +D L K   +  A++++  M    G  PD++ YN++  CL K  +V E  +   +M +  
Sbjct: 124 MDALGKAGRAAKALEVFSNMQK-AGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKG 182

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
             P        I +L      E A   +  +      P   + N LL GL+ L R  +  
Sbjct: 183 IMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEAC 242

Query: 416 RFAEEM 421
              +EM
Sbjct: 243 DLFDEM 248



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 8/245 (3%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  ++  L+ G+ K G+ + A   F  + +     P  V +++T +I L +  +  +AL
Sbjct: 9   PDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAV-SFDTLVIFLCKMSRATDAL 67

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
              + M G      +   +  +    +L     A +L    M  H    D  TY+ + + 
Sbjct: 68  AVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLH-HMTAHAFVLDVFTYSYLMDA 126

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L K  R  +  + F  M K    P  +     I+ L    + + A+E+   +   GI+P 
Sbjct: 127 LGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPD 186

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDI 450
             + N ++  L + GR      F   M  R+    ++ Y   ++ LKK     +    D+
Sbjct: 187 CRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKK--LRRTDEACDL 244

Query: 451 FDSLE 455
           FD ++
Sbjct: 245 FDEMQ 249



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 4/139 (2%)

Query: 116 WNLMVDVLGKNGRFEQ-MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  ++D L K GR E  +  + R++K   V +   + ++   +C +G+ D+    F  M 
Sbjct: 260 FGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMI 319

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
                 D +    L+    R+   TS A+E L   V++   P   ++ +L+      G V
Sbjct: 320 ECSCFPDSITYTILVLGFSRR-GHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQV 378

Query: 234 EEANKTFGEMVERFEWNPE 252
           E+A   F EM+ +  +NP+
Sbjct: 379 EDAYTLFKEMIAK-GFNPD 396


>gi|357508583|ref|XP_003624580.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499595|gb|AES80798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 145/328 (44%), Gaps = 17/328 (5%)

Query: 43  HLDAPYISSSARIICEILAHASSD--DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVD 100
           HL         + I +I+    S   +I+  L    +  + +LV EVL    +   +A  
Sbjct: 91  HLRDDGFVKDVKTILDIIHKPGSGPYEIKQKLEDCNVKASSELVVEVLSRVRNDWEAAFT 150

Query: 101 FFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIF 154
           FF WAG+  G   S   ++ M+ VLGK  RF+  W  V  M+     + +++  T   + 
Sbjct: 151 FFLWAGKQPGYDHSVREYHSMISVLGKMRRFDTAWALVEEMRRGKTGESIVTPQTLLIMI 210

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIV 213
             YC       A+ +F        +  +     LLSA+CR +N Q +  L F N  K + 
Sbjct: 211 RKYCAVHDVGRAINTFYAFKRFNFQVGLYEFQGLLSALCRYKNVQDAEHLLFCN--KNVF 268

Query: 214 DPDGDSFAILLEGW-EKEGNVEEANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVD 271
             D  SF I+L GW     +   A + + EM +R     +H V++Y + +    +  ++ 
Sbjct: 269 PLDTKSFNIILNGWCNLIVSARNAERIWEEMSKR---RIQHDVVSYASIISCYSKSSKLY 325

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
             L+    MK  N  P  K ++  +  L K      AV L  I M  +   PD++TYN +
Sbjct: 326 RVLQLFEQMKKRNITPDRKVYNAVIFSLAKNRMVKEAVNLI-IKMEDNNVTPDAITYNSL 384

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + L K +++ E ++ F+ M++    P+
Sbjct: 385 IKPLCKARKIDEAKEIFNVMLERGISPS 412



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 109/248 (43%), Gaps = 20/248 (8%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           NL+V        +E+M  + R ++ D V    ++ASI   Y  + K    +  F+ M   
Sbjct: 284 NLIVSARNAERIWEEM--SKRRIQHDVV----SYASIISCYSKSSKLYRVLQLFEQMKKR 337

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKEGN 232
            +  D    N+++ ++ +  N+  +  E +N + K+ D    PD  ++  L++   K   
Sbjct: 338 NITPDRKVYNAVIFSLAK--NRMVK--EAVNLIIKMEDNNVTPDAITYNSLIKPLCKARK 393

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA + F  M+ER   +P     +  F I  ++    +E  + L  MK   C PT++ +
Sbjct: 394 IDEAKEIFNVMLER-GISPSIRTFHAFFRILRVK----EEVFELLDKMKELGCNPTIETY 448

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
              +    +        ++W+ M    G   D  +Y ++   L  N +V E  K++ EM 
Sbjct: 449 IMLIRKFCRWRQLDEVKRIWNAMRE-DGIGHDRSSYIVLIHGLFLNCKVEEAYKYYIEMQ 507

Query: 353 KNEWQPTP 360
           +  + P P
Sbjct: 508 EKGFLPEP 515


>gi|297839201|ref|XP_002887482.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333323|gb|EFH63741.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 490

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 103/449 (22%), Positives = 178/449 (39%), Gaps = 71/449 (15%)

Query: 66  DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVL 123
           DD+E AL  + +  T  +V ++LQ       +A  FF WAG  +  S  P A+N M+D+L
Sbjct: 8   DDMEKALDDSVVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDIL 67

Query: 124 G----KNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHG 177
                KN +F  + + +  MK +    +P      I   YC   +Y   V  F       
Sbjct: 68  SSTKYKNKQFRIVIDMLDYMKRNKKTVVPADILLEILRKYC--ERYLTHVQKFAKRKRIR 125

Query: 178 VEQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           V+   ++ A N LL A+C+           L R++  V PD  +F +L  GW +  + ++
Sbjct: 126 VKTQPEINAFNMLLDALCKC-GLVKEGEALLRRMRHRVKPDATTFNVLFFGWCRVRDPKK 184

Query: 236 ANKTFGEMVERFEWNPE---HVLAYETF-------------------------------- 260
           A K   EM++     PE   +  A +TF                                
Sbjct: 185 AMKLLEEMIQAGH-KPENFTYCAAIDTFCQAGMVDEAADLFEFMITKGSVVSAPTAKTFA 243

Query: 261 --LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
             ++ L +  + +E  + +  M    C P +  + + ++ +        A +  D  M  
Sbjct: 244 LMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAGKVEEAYKFLD-EMSN 302

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            G  PD +TYN     L +N++  E  K +  M+++   P+       I+M  + D+P+ 
Sbjct: 303 KGYPPDIVTYNCFLRVLCENRKSDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDG 362

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI-LIYEV------ 431
           A   W  + E   +    +   ++ GL +  R  +     EE++N+ + L Y        
Sbjct: 363 AFNTWKEMDERDCVQDIETYCVMINGLFDCHRAKEACFLLEEVVNKGLKLPYRAFDSFLM 422

Query: 432 ---------TMHKLK---KAFYNESRSMR 448
                     +HKL    K FYN S + R
Sbjct: 423 RLSTVGNLKAIHKLSEHMKKFYNHSMARR 451


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 149/315 (47%), Gaps = 10/315 (3%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK----EDGVLSLPTFASIFDSYC 158
           R   +G +     + ++V+ L K G  +  +N +  M+    E GVL    + +I D  C
Sbjct: 6   RMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVL---IYNTIIDGLC 62

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
                D+A+  F  M   G+  +VV  +SL+S +C     +  +    + +++ ++PD  
Sbjct: 63  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 122

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +F+ L++ + KEG + EA K + EMV+R   +P  ++ Y + +       ++DEA +   
Sbjct: 123 TFSALIDAFVKEGKLVEAEKLYDEMVKR-SIDP-SIVTYSSLINGFCMHDRLDEAKQMFE 180

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M  ++CFP +  ++  +    K       ++++   M   G   +++TYN++ + L + 
Sbjct: 181 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR-EMSQRGLVGNTVTYNILIQGLFQA 239

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
                 ++ F EM+ +   P  +   T +  L    + E A+ ++ Y+  + + P   + 
Sbjct: 240 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 299

Query: 399 NELLVGLRNLGRLSD 413
           N ++ G+   G++ D
Sbjct: 300 NIMIEGMCKAGKVED 314



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 142/331 (42%), Gaps = 23/331 (6%)

Query: 96  SSAVDFFRWAGRGQRLSP----------YAWNLMVDVLGKNGRF---EQMWNAVRVMKED 142
           S   ++ RW+   + LS           + ++ ++D   K G+    E++++   ++K  
Sbjct: 94  SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD--EMVKRS 151

Query: 143 GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202
              S+ T++S+ + +C   + DEA   F+ M       DVV  N+L+   C+ +      
Sbjct: 152 IDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM 211

Query: 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
             F    ++ +  +  ++ IL++G  + G+ + A + F EMV   +  P +++ Y T L 
Sbjct: 212 EVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS--DGVPPNIMTYNTLLD 269

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--MVFHG 320
            L +  ++++A+     ++     PT+  ++  ++ + K          WD+   +   G
Sbjct: 270 GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG---WDLFCNLSLKG 326

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD + YN +     +     E +  F EM ++   P      T I   L   + E + 
Sbjct: 327 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 386

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRL 411
           E+   +   G    +AS   L+  + + GRL
Sbjct: 387 ELIKEMRSCGFAG-DASTIGLVTNMLHDGRL 416



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 135/315 (42%), Gaps = 9/315 (2%)

Query: 92  YDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           Y     A++ F+    +G R +   ++ ++  L   GR+      +  M E  +   + T
Sbjct: 64  YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 123

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLN 207
           F+++ D++   GK  EA   +D M    ++  +V  +SL++  C  +  ++  +  EF+ 
Sbjct: 124 FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM- 182

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V K   PD  ++  L++G+ K   VEE  + F EM +R      + + Y   +  L + 
Sbjct: 183 -VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG--NTVTYNILIQGLFQA 239

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
              D A +  + M  +   P +  ++  LD L K      A+ +++ +       P   T
Sbjct: 240 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR-SKMEPTIYT 298

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN++ E + K  +V +    F  +     +P  +   T I+        E A  ++  + 
Sbjct: 299 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 358

Query: 388 ENGILPLEASANELL 402
           E+G LP     N L+
Sbjct: 359 EDGTLPNSGCYNTLI 373



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 105/233 (45%), Gaps = 3/233 (1%)

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V K   PD  ++ +++ G  K G+ + A     +M E+ +  P  VL Y T +  L + K
Sbjct: 8   VAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM-EQGKLEP-GVLIYNTIIDGLCKYK 65

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            +D+AL   + M+ +   P +  +S+ +  L      + A +L   M +     PD  T+
Sbjct: 66  HMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM-IERKINPDVFTF 124

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           + + +  +K  ++ E EK + EM+K    P+ +  ++ I      D  + A +++ +++ 
Sbjct: 125 SALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 184

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
               P   + N L+ G     R+ +      EM  R ++   VT + L +  +
Sbjct: 185 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLF 237



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 2/144 (1%)

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           MV  G  PD +TY ++   L K           ++M + + +P  L   T I  L     
Sbjct: 7   MVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKH 66

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 435
            + A+ ++  +   GI P   + + L+  L N GR SD  R   +M+ R+I     T   
Sbjct: 67  MDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 126

Query: 436 LKKAFYNESR--SMRDIFDSLERR 457
           L  AF  E +      ++D + +R
Sbjct: 127 LIDAFVKEGKLVEAEKLYDEMVKR 150


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 155/352 (44%), Gaps = 7/352 (1%)

Query: 98  AVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFD 155
           A+ F + A   G R   + +N +V+ L K G  +     V  M   G+   + T+ S+  
Sbjct: 292 ALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLIS 351

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVD 214
             C  G+ +EAV   D M       + V  N+++S++C+ EN+   A E    +  K + 
Sbjct: 352 GLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCK-ENRVDEATEIARLLTSKGIL 410

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  +F  L++G     N + A   F EM  +    P+    Y   + +L   ++++EAL
Sbjct: 411 PDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGK-GCRPDE-FTYNMLIDSLCSSRKLEEAL 468

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
             L+ M+   C   +  ++  +D   K      A +++D  M   G   DS+TYN + + 
Sbjct: 469 NLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFD-EMELQGVSRDSVTYNTLIDG 527

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L K+KRV +  +   +MI    +P      + +T      + + A +I   +  +G  P 
Sbjct: 528 LCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPD 587

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446
             +   L+ GL   GR+    R    +  + +++     + + +A +  +R+
Sbjct: 588 IVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRT 639



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 141/299 (47%), Gaps = 8/299 (2%)

Query: 65  SDDIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVD 121
           + +I   L   GI+P     + ++Q   LS +  S+   F    G+G R   + +N+++D
Sbjct: 397 ATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLID 456

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
            L  + + E+  N ++ M+ +G   ++  + ++ D +C   + +EA   FD M + GV +
Sbjct: 457 SLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSR 516

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           D V  N+L+  +C+ +     A      + + + PD  ++  LL  + K G++++A    
Sbjct: 517 DSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIV 576

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
             M      NP+ ++ Y T +  L +  +V  A + LR ++ +    T   ++  +  L 
Sbjct: 577 QTMTSS-GCNPD-IVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALF 634

Query: 301 KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR-VHEVEKFFHEMIKNEWQP 358
           K N +  A++L+  M+      PD++TY +++  L      + E   F  EMI+    P
Sbjct: 635 KRNRTHEAMRLFREMLD-KSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIP 692



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 148/366 (40%), Gaps = 45/366 (12%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVR 137
           TP  + E L+   D   +A+  F WA +     P +  +  ++  LGK G FE M   + 
Sbjct: 63  TPKQLIETLRRQTDE-VAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLE 121

Query: 138 VMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM----------------------- 173
            MK  G       F    +SY     YDE V    VM                       
Sbjct: 122 EMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDA 181

Query: 174 -------SMHG------VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
                  S H       +  DV   N L+ A+C+  +Q   A+  +  +    + PD  +
Sbjct: 182 NKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKA-HQVRPAILMMEEMPSYGLSPDETT 240

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  +++G+ + GN++ A +   +MVE     P   +     +    +  ++D+AL F++ 
Sbjct: 241 FTTIMQGYIEGGNLDGALRIKEQMVEY--GCPCTDVTVNVLINGFCKQGRIDQALSFIQE 298

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
              E   P    ++  ++ L K+  + HA+++ D M++  G  PD  TYN +   L K  
Sbjct: 299 AVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLL-GGLDPDIYTYNSLISGLCKLG 357

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
            + E  K   +M+  +  P  +     I+ L   +  + A EI   +   GILP   + N
Sbjct: 358 EIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFN 417

Query: 400 ELLVGL 405
            L+ GL
Sbjct: 418 SLIQGL 423



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 133/316 (42%), Gaps = 12/316 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGAGKYDEAVMS 169
           Y +N ++  L K G  E+   AV+++ +    D   +  T+ +I  S C   + DEA   
Sbjct: 344 YTYNSLISGLCKLGEIEE---AVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEI 400

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWE 228
             +++  G+  DV   NSL+  +C   N  S A++    +K K   PD  ++ +L++   
Sbjct: 401 ARLLTSKGILPDVCTFNSLIQGLCLSSNHKS-AMDLFEEMKGKGCRPDEFTYNMLIDSLC 459

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
               +EEA     EM         +V+ Y T +    + K+++EA +    M+ +     
Sbjct: 460 SSRKLEEALNLLKEM--ELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRD 517

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
              ++  +D L K      A QL D  M+  G  PD  TYN +     K   + +     
Sbjct: 518 SVTYNTLIDGLCKSKRVEDAAQLMD-QMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIV 576

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
             M  +   P  +  AT I+ L  A   ++A  +   I   G++    + N ++  L   
Sbjct: 577 QTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKR 636

Query: 409 GRLSDVRRFAEEMLNR 424
            R  +  R   EML++
Sbjct: 637 NRTHEAMRLFREMLDK 652



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 132/322 (40%), Gaps = 17/322 (5%)

Query: 112 SPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVM 168
           SP A  +N ++  L K  R ++     R++   G+L  + TF S+    C +  +  A+ 
Sbjct: 375 SPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMD 434

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS-----FAIL 223
            F+ M   G   D    N L+ ++C     +SR LE    + K ++ +G +     +  L
Sbjct: 435 LFEEMKGKGCRPDEFTYNMLIDSLC-----SSRKLEEALNLLKEMELNGCARNVVIYNTL 489

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G+ K   +EEA + F EM    +      + Y T +  L + K+V++A + +  M  E
Sbjct: 490 IDGFCKNKRIEEAEEIFDEM--ELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIME 547

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P    +++ L    K  D   A  +   M    G  PD +TY  +   L K  RV  
Sbjct: 548 GLRPDKFTYNSLLTHFCKTGDIKKAADIVQTM-TSSGCNPDIVTYATLISGLCKAGRVQV 606

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
             +    +       TP      I  L   +    A+ ++  +L+    P   +   +  
Sbjct: 607 ASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYR 666

Query: 404 GLRNLGR-LSDVRRFAEEMLNR 424
           GL N G  + +   F  EM+ R
Sbjct: 667 GLCNGGGPIGEAVDFTVEMIER 688


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 118/259 (45%), Gaps = 7/259 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  ++ L + GR          M   G    + T++++   +  A K+D+A   F+ M 
Sbjct: 520 YNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMI 579

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   + V  N LL  +C++         F   V++  DPD  ++  LL G+   G +E
Sbjct: 580 SRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIE 639

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A + F EMV +   +P+ V+AY   L    R  +  EA +  +VM    C P     + 
Sbjct: 640 QAVEVFDEMVSK-GHDPD-VVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNI 697

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +D L K      AV++++ M   HG  PD +TYN +   L   +R+ E  K F E+ + 
Sbjct: 698 MIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRL 757

Query: 355 EWQPTPLNCATAITMLLDA 373
           +  P P     A  +LL+A
Sbjct: 758 KLSPDP----HAFNVLLEA 772



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 149/348 (42%), Gaps = 6/348 (1%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
           L+  AW   +  L K+G+ EQ + A R M+E    S P +  +      +G+ D+A  + 
Sbjct: 303 LNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDMLIRLLIESGRIDKAEEAC 362

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGWEK 229
             ++   ++      +S++  +C+   +   AL  L   +K+   PD  + ++L+    K
Sbjct: 363 LEIAGRNIQPSSGTCHSVIQELCKA-GRVDSALSLLETMIKRGYCPDMATHSMLINELCK 421

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PT 288
              ++EA +    M  +         +Y + L +L + K+V +A      M  E  F P 
Sbjct: 422 ADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPD 481

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  +S  +D   K+++   A +L+  M+  +   P+  TYN     L++  R+ + +  +
Sbjct: 482 VVSYSILIDGFCKIDELGRAEKLYKQMIDLN-CVPNVTTYNAFLNGLMRKGRIADAQGVY 540

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            EM+     P  +  +T I     A + + A E++  ++  G  P   + N LL GL   
Sbjct: 541 EEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKE 600

Query: 409 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 454
            +  +      +M+ R      VT   L   F N  +     ++FD +
Sbjct: 601 SKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEM 648



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 116/277 (41%), Gaps = 12/277 (4%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           + S+ +S C A K  +A   F  M S      DVV+ + L+   C+  ++  RA +    
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKI-DELGRAEKLY-- 505

Query: 209 VKKIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
            K+++D    P+  ++   L G  ++G + +A   + EMV     +P+ V+ Y T +   
Sbjct: 506 -KQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAA-GCSPD-VITYSTLIHGF 562

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
              ++ D+A +    M    C P    ++  L  L K +    A +L+   MV  G  PD
Sbjct: 563 SLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFR-KMVERGCDPD 621

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TY  +        ++ +  + F EM+     P  +     +     A +P  A +++ 
Sbjct: 622 RVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQ 681

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            ++     P   S N ++ GL    RL D     E M
Sbjct: 682 VMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERM 718



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 122/329 (37%), Gaps = 68/329 (20%)

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA+  F  +     + DV   N LL  + R  +       F   V + V P+G ++A+L+
Sbjct: 112 EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLV 171

Query: 225 EGWEKEGNVEEANKTFGEMVER----------------------------FEWNPEHVLA 256
           +    E N +EA + FGEMV++                            F  + E  +A
Sbjct: 172 QSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVA 231

Query: 257 YE-----TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            E       L+  +   +  EA K  R M    C P    +S  +    KL +   A +L
Sbjct: 232 VEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKL 291

Query: 312 WDIMMV-----------------------FHGAFPDSLT-----------YNMIFECLIK 337
           +  M V                          AF    T           Y+M+   LI+
Sbjct: 292 FLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQPVYDMLIRLLIE 351

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
           + R+ + E+   E+     QP+   C + I  L  A   + A+ +   +++ G  P  A+
Sbjct: 352 SGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMAT 411

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            + L+  L    ++ + + F + M +R+I
Sbjct: 412 HSMLINELCKADKIQEAQEFLQGM-DRKI 439


>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 654

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 160/405 (39%), Gaps = 43/405 (10%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLM 119
           H+    +E AL  +G++  P L   VL    D+ + A  F+ WA +  G RL   A+  M
Sbjct: 103 HSRVPKLELALRESGVVVRPGLTERVLSRCGDAGNLAYRFYSWASKQSGHRLDHDAYKAM 162

Query: 120 VDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           + VL +  +F  +W  +  M+++   +++   F  +   +  A    +AV   D M  +G
Sbjct: 163 IKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVEVLDEMPKYG 222

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
            E D      LL A+C+       A      ++    P    F  LL GW KEG + EA 
Sbjct: 223 CEPDEYVFGCLLDALCKN-GSVKEAASLFEDMRYRWKPSVKHFTSLLYGWCKEGKLMEAK 281

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
               +M +     P+ ++ Y   L    +  ++ +A   L+ M+ + C P    ++  + 
Sbjct: 282 HVLVQMKD-MGIEPD-IVVYNNLLGGYAQAGKMGDAYDLLKEMRRKRCEPNATSYTVLIQ 339

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
            L K      A +L+ + M  +G   D +TY+ +     K  ++    +   EMI+    
Sbjct: 340 SLCKHERLEEATRLF-VEMQTNGCQADVVTYSTLISGFCKWGKIKRGYELLDEMIQQGHF 398

Query: 358 PT----------------------------PLNCA-------TAITMLLDADEPEIAIEI 382
           P                              + CA       T I +     E +  I++
Sbjct: 399 PNQVIYQHIMLAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGIQL 458

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           WN +  +G+ P   +   ++ G    G L +   + +EM+ R + 
Sbjct: 459 WNEMESSGLSPGMDTFVIMINGFLEQGCLVEACEYFKEMVGRGLF 503


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 113/260 (43%), Gaps = 4/260 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ TF S+ D YC  GK ++A    D M   G+E DVV  N+L+S  C+        + F
Sbjct: 579 TIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILF 638

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              + K V P   +++I+L+G    G    A K F EM++        +  Y+  L  L 
Sbjct: 639 REMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMID--SGTAVDIDTYKILLKGLC 696

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           R    DEA+     +   +C   +   +  ++ L K+     A  L+  +    G  P+ 
Sbjct: 697 RNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAIST-SGLVPNV 755

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
            TY ++   L+K   V E +  F  M K+   P+       I MLL   +  +    +  
Sbjct: 756 STYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDI-VKAGYYMS 814

Query: 386 ILENGILPLEASANELLVGL 405
            ++  I+ LEAS   LL+ L
Sbjct: 815 KVDGTIISLEASTTSLLMSL 834



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 159/372 (42%), Gaps = 29/372 (7%)

Query: 98  AVDFF--RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFAS 152
           AVD    R +  G   +  ++N ++  L  + R ++  + V+ M ++G    P   +F +
Sbjct: 210 AVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNT 269

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           +   +   G+  +A    + M   GVE DVV  NS++ A+C+        L     V K 
Sbjct: 270 VIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKG 329

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V+PDG ++  ++ G+   G+ +E+ K F +M  +    P  ++ + +F+ +L +  +  +
Sbjct: 330 VEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSK-GLIPG-IVTFNSFMSSLCKHGRSKD 387

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH-----GAFPDSLT 327
           A +  + M  +   P L  +S      + L+      +  D+  +FH     G   +   
Sbjct: 388 AEEIFQYMTTKGHMPDLVSYS------ILLHGYATEGRFADMNNLFHSMADKGIVANCHC 441

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           +N++     K   + E    F EM     +P  +  +T I+          A+E ++ ++
Sbjct: 442 FNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMI 501

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR-----RILIYEVTMHKLKKAFYN 442
             G+ P     + L+ G    G L   +    EM+++      I+ +   +H L     N
Sbjct: 502 SIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSL----CN 557

Query: 443 ESRSM--RDIFD 452
           E R M   D+F+
Sbjct: 558 EGRVMDAHDVFN 569



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 112/284 (39%), Gaps = 2/284 (0%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           LS+ T+  + D  C A + D     F  +   G+    +  N+ L  +C  +        
Sbjct: 154 LSVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDV 213

Query: 205 FLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            L+R+  +   P+  S+  +++    +   +EA      M +        V+++ T +  
Sbjct: 214 LLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHG 273

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
             +  +V +A   +  M  +   P +  +++ +D L K      A +L    MV  G  P
Sbjct: 274 FFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKA-ELVLRQMVDKGVEP 332

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D LTY  I      +    E  K F +M      P  +   + ++ L      + A EI+
Sbjct: 333 DGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIF 392

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
            Y+   G +P   S + LL G    GR +D+      M ++ I+
Sbjct: 393 QYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIV 436


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 143/322 (44%), Gaps = 6/322 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F+    +G   S  ++ +++D L KN  F+        MK +GV +   T+  + D  C 
Sbjct: 396 FYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 455

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
            G  DEAV+  + MS  G++ D+V  ++L++  C+   +   A E + R+ ++ + P+G 
Sbjct: 456 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKV-GRFKTAKEIVCRIYRVGLSPNGI 514

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            ++ L+    + G ++EA + +  M+   E +      +   + +L +  +V EA +F+R
Sbjct: 515 IYSTLIYNCCRMGCLKEAIRIYEAMI--LEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMR 572

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M  +   P    F   ++      +   A  ++D M    G  P   TY  + + L K 
Sbjct: 573 CMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKV-GHHPTFFTYGSLLKGLCKG 631

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
             + E EKF   +         +   T +T +  +     A+ ++  +++  ILP   + 
Sbjct: 632 GHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTY 691

Query: 399 NELLVGLRNLGRLSDVRRFAEE 420
             L+ GL   G+      FA+E
Sbjct: 692 TSLISGLCRKGKTVIAILFAKE 713



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 135/308 (43%), Gaps = 4/308 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++++VL   G FE+    ++ M++ G   ++ T+ ++   YC  G++  A+   D M 
Sbjct: 236 FNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMK 295

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             GV+ DV   N L+  +CR        L   +  K+++ P+  ++  L+ G+  EG V 
Sbjct: 296 SKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVL 355

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A++   EM+  F  +P HV  +   +   I      EALK   +M+ +   P+   +  
Sbjct: 356 IASQLLNEMLS-FGLSPNHV-TFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGV 413

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            LD L K N      + + + M  +G     +TY  + + L KN  + E     +EM K+
Sbjct: 414 LLDGLCK-NAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKD 472

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
              P  +  +  I         + A EI   I   G+ P     + L+     +G L + 
Sbjct: 473 GIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEA 532

Query: 415 RRFAEEML 422
            R  E M+
Sbjct: 533 IRIYEAMI 540



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 121/320 (37%), Gaps = 38/320 (11%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G     + +N++V  L K G+  +    +R M  DG+L +  +F  + + Y  +G+  +A
Sbjct: 543 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKA 602

Query: 167 VMSFDVM---------------------------------SMHGVEQ--DVVAVNSLLSA 191
              FD M                                 S+H V    D V  N+LL+A
Sbjct: 603 FSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTA 662

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           +C+  N       F   V++ + PD  ++  L+ G  ++G    A     E   R    P
Sbjct: 663 MCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLP 722

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
             V+ Y  F+  + +  Q    + F   M      P +   +  +D   ++        L
Sbjct: 723 NKVM-YTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDL 781

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
              M   +G  P+  TYN++     K K V      +  +I N   P  L C + +  + 
Sbjct: 782 LPEMGNQNGG-PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGIC 840

Query: 372 DADEPEIAIEIWNYILENGI 391
           +++  EI ++I    +  G+
Sbjct: 841 ESNMLEIGLKILKAFICRGV 860



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 55/278 (19%), Positives = 110/278 (39%), Gaps = 7/278 (2%)

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
           Y   G   +++  F +M ++G    V   N++L ++ +     S        +K+ + PD
Sbjct: 173 YLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPD 232

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +F IL+     EG+ E+++    +M E+  + P  ++ Y T L    +  +   A++ 
Sbjct: 233 VATFNILINVLCAEGSFEKSSYLMQKM-EKSGYAPT-IVTYNTVLHWYCKKGRFKAAIEL 290

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM--VFHGAFPDSLTYNMIFEC 334
           L  MK +     +  ++  +  L + N       L   M   + H   P+ +TYN +   
Sbjct: 291 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIH---PNEVTYNTLING 347

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
                +V    +  +EM+     P  +     I   +     + A++++  +   G+ P 
Sbjct: 348 FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPS 407

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
           E S   LL GL         R F   M    + +  +T
Sbjct: 408 EVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRIT 445



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 86/210 (40%), Gaps = 5/210 (2%)

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           FG ++  +     +   Y+  +   +R   + ++L+  R+M      P++ +  NA  IL
Sbjct: 149 FGALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSV-YTCNA--IL 205

Query: 300 VKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
             +  S   V +W  +  M+     PD  T+N++   L       +      +M K+ + 
Sbjct: 206 GSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYA 265

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
           PT +   T +         + AIE+ +++   G+     + N L+  L    R++     
Sbjct: 266 PTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLL 325

Query: 418 AEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
             +M  R I   EVT + L   F NE + +
Sbjct: 326 LRDMRKRMIHPNEVTYNTLINGFSNEGKVL 355



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 83/203 (40%), Gaps = 3/203 (1%)

Query: 149  TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            TF  +    C  G+ + A     VM+  G+  D    ++++S + R        +     
Sbjct: 866  TFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEM 925

Query: 209  VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K+ + P+   +  L+ G  + G+++ A     EM+      P   +A    +  L +  
Sbjct: 926  SKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPN--VAESAMVRALAKCG 983

Query: 269  QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            + DEA   LR M      PT+  F+  + +  K  +   A++L  ++M   G   D ++Y
Sbjct: 984  KADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALEL-RVVMSNCGLKLDLVSY 1042

Query: 329  NMIFECLIKNKRVHEVEKFFHEM 351
            N++   L     +    + + EM
Sbjct: 1043 NVLITGLCAKGDMALAFELYEEM 1065


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 158/333 (47%), Gaps = 7/333 (2%)

Query: 83  LVHEVLQLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           L+H +    ++  S AV    R   RG +   + +  +V+ L K G  +   + ++ M++
Sbjct: 192 LIHGLFL--HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK 249

Query: 142 DGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
             +  ++  + +I D  C     D+A   F+ M   G++ DV   NSL+S +C     + 
Sbjct: 250 GKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSD 309

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
            +    + +++ ++P+  +F  L++ + KEG + EA K F EM++R   +P +++ Y + 
Sbjct: 310 ASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR-SIDP-NIVTYNSL 367

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +       ++DEA +   +M  ++C P +  ++  +    K       ++L+   M   G
Sbjct: 368 INGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFR-EMSQRG 426

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
              +++TYN + + L +       +K F +M+ +   P  +  +  +  L    + E A+
Sbjct: 427 LVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKAL 486

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSD 413
            ++ Y+ ++ + P   + N ++ G+   G++ D
Sbjct: 487 VVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVED 519



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 131/296 (44%), Gaps = 7/296 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T +S+ + YC   +  EAV   D M   G + D V  N+L+  +    N+ S A+  ++R
Sbjct: 153 TLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLH-NKASEAVALIDR 211

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIR 266
            V +   PD  ++  ++ G  K G+++ A     +M + + E N   V+ Y T +  L +
Sbjct: 212 MVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEAN---VVIYNTIIDGLCK 268

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
            K +D+A      M+ +   P +  +++ +  L      + A +L   M +     P+ +
Sbjct: 269 YKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDM-IERKINPNVV 327

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           T+N + +   K  ++ E EK F EMI+    P  +   + I      D  + A +I+  +
Sbjct: 328 TFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLM 387

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
           +    LP   + N L+ G     R+ +      EM  R ++   VT + L +  + 
Sbjct: 388 VSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 443



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 132/313 (42%), Gaps = 5/313 (1%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           Y     A D F +   +G +   + +N ++  L   GR+      +  M E  +  ++ T
Sbjct: 269 YKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVT 328

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F S+ D++   GK  EA   FD M    ++ ++V  NSL++  C  +        F   V
Sbjct: 329 FNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMV 388

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            K   PD  ++  L++G+ K   VEE  + F EM +R      + + Y T +  L +   
Sbjct: 389 SKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG--NTVTYNTLIQGLFQAGD 446

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
            D A K  + M  +   P +  +S  LD L K      A+ +++ +       P+  TYN
Sbjct: 447 CDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK-SKMEPNIYTYN 505

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
           ++ E + K  +V +    F  +     +P  +   T I+        E A  ++  + E+
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKED 565

Query: 390 GILPLEASANELL 402
           G LP     N L+
Sbjct: 566 GTLPDSGCYNTLI 578



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 5/298 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++ + + +C   +   A+     M   G E D+V ++SLL+  C  + + S A+  +++
Sbjct: 118 TYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGK-RISEAVALVDQ 176

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + ++   PD  +F  L+ G        EA      MV R    P+ +  Y T +  L + 
Sbjct: 177 MVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVAR-GCQPD-LFTYGTVVNGLCKR 234

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
             +D AL  L+ M+       +  ++  +D L K      A  L++ M    G  PD  T
Sbjct: 235 GDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMET-KGIKPDVFT 293

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +  CL    R  +  +   +MI+ +  P  +   + I       +   A ++++ ++
Sbjct: 294 YNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMI 353

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           +  I P   + N L+ G     RL + ++    M+++  L   VT + L K F    R
Sbjct: 354 QRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKR 411



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 129/299 (43%), Gaps = 7/299 (2%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-SF 220
           K D+AV  F  M        ++  + LLSAI +  N+    +    +++ +  P    ++
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKM-NKFDVVISLGEQMQNLGIPHNHYTY 119

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           +ILL  + +   +  A    G+M+ +  + P+ ++   + L     GK++ EA+  +  M
Sbjct: 120 SILLNCFCRRSQLPLALAVLGKMM-KLGYEPD-IVTLSSLLNGYCHGKRISEAVALVDQM 177

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                 P    F+  +  L   N ++ AV L D  MV  G  PD  TY  +   L K   
Sbjct: 178 VEMGYKPDTVTFNTLIHGLFLHNKASEAVALID-RMVARGCQPDLFTYGTVVNGLCKRGD 236

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           +        +M K + +   +   T I  L      + A +++N +   GI P   + N 
Sbjct: 237 IDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNS 296

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLERR 457
           L+  L N GR SD  R   +M+ R+I    VT + L  AF  E + +    +FD + +R
Sbjct: 297 LISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR 355



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 126/302 (41%), Gaps = 7/302 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F+ +  +     K+D  +   + M   G+  +    + LL+  CR+ +Q   AL  
Sbjct: 80  SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRR-SQLPLALAV 138

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  + + LL G+     + EA     +MVE   + P+ V  + T +  L
Sbjct: 139 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVE-MGYKPDTV-TFNTLIHGL 196

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-P 323
               +  EA+  +  M    C P L  +   ++ L K  D   A+ L   M    G    
Sbjct: 197 FLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME--KGKIEA 254

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           + + YN I + L K K + +    F++M     +P      + I+ L +      A  + 
Sbjct: 255 NVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLL 314

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
           + ++E  I P   + N L+      G+L +  +  +EM+ R I    VT + L   F   
Sbjct: 315 SDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 374

Query: 444 SR 445
            R
Sbjct: 375 DR 376


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 145/343 (42%), Gaps = 3/343 (0%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   +G   S  A+N ++  LG+ G+ E+    +  MK D   +L ++  + D  C AG+
Sbjct: 367 RQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGE 426

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A+   D M   G+  +++ VN ++  +C+ +        FL    K+  PD  +F  
Sbjct: 427 LEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCS 486

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  + G V +A   + +M++  +  P  V+ Y + +    +  + ++  K  + M  
Sbjct: 487 LIDGLGRHGKVNDAYMLYEKMLDSGQ-TPNAVV-YTSLIRNFFKCGRKEDGHKIYKEMMH 544

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
             C P L   +N +D + K  +      L++ +    G  PD  +Y+++   L+K     
Sbjct: 545 RGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKA-QGLTPDVRSYSILIHGLVKGGFSK 603

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +  K F+EM +             I     + +   A ++   +   G+ P   +   ++
Sbjct: 604 DTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVI 663

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            GL  + RL +     EE  ++ + +  V    L   F    R
Sbjct: 664 DGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGR 706



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 138/320 (43%), Gaps = 9/320 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G  ++ + +  ++ V  + GR +   + +  MK +     L  +    D +   GK D A
Sbjct: 232 GYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMA 291

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILL 224
              F  +   G+  D V   S++  +C+ E  ++     E L+  K +  P   ++  ++
Sbjct: 292 WKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSV--PCVYAYNTMI 349

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+   G   EA     E  +R    P  V+AY   L  L R  +V+EAL+ L  MK + 
Sbjct: 350 MGYGSVGKFNEAYSLL-ERQKRKGCIPS-VIAYNCILTCLGRKGKVEEALRILEAMKMDA 407

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P L  ++  +D+L K  +   A+++ D M    G FP+ +T N++ + L K +R+ E 
Sbjct: 408 A-PNLTSYNILIDMLCKAGELEAALKVQDSMKE-AGLFPNIITVNIMIDRLCKAQRLDEA 465

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
              F  +      P  +   + I  L    +   A  ++  +L++G  P       L+  
Sbjct: 466 CSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRN 525

Query: 405 LRNLGRLSDVRRFAEEMLNR 424
               GR  D  +  +EM++R
Sbjct: 526 FFKCGRKEDGHKIYKEMMHR 545



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 113/251 (45%), Gaps = 18/251 (7%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
           + Q L+P   ++++++  L K G  +  +     MKE G+ L    +  + D +C +GK 
Sbjct: 578 KAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKV 637

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           ++A    + M   G++  VV   S++  + + +      + F     K VD +   ++ L
Sbjct: 638 NKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSL 697

Query: 224 LEGWEKEGNVEEANKTFGEMVER------FEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
           ++G+ K G ++EA     E++++      + WN          L  L++ +++DEAL   
Sbjct: 698 IDGFGKVGRIDEAYLILEELMQKGLTPNTYTWN--------CLLDALVKAEEIDEALVCF 749

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
           + MK   C P    +S  ++ L K+     A   W  M    G  P+++TY  +   L +
Sbjct: 750 QNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQK-QGLKPNTITYTTMISGLAR 808

Query: 338 NKRVHEVEKFF 348
              V E +  F
Sbjct: 809 VGNVLEAKDLF 819



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 129/307 (42%), Gaps = 11/307 (3%)

Query: 80  TPD------LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMW 133
           TPD      L+H +++  +   +  + F+    +G  L   A+N+++D   K+G+  + +
Sbjct: 583 TPDVRSYSILIHGLVKGGFSKDTYKL-FYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAY 641

Query: 134 NAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
             +  MK  G+  ++ T+ S+ D      + DEA M F+      V+ +VV  +SL+   
Sbjct: 642 QLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGF 701

Query: 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
            +        L     ++K + P+  ++  LL+   K   ++EA   F  M +  +  P 
Sbjct: 702 GKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNM-KNLKCPPN 760

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            V  Y   +  L + ++ ++A  F + M+ +   P    ++  +  L ++ +   A  L+
Sbjct: 761 EV-TYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLF 819

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
           +      G  PDS  YN + E L    +  +    F E      +     C   +  L  
Sbjct: 820 E-RFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLLDALHK 878

Query: 373 ADEPEIA 379
           AD  E A
Sbjct: 879 ADCLEQA 885



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/337 (19%), Positives = 137/337 (40%), Gaps = 39/337 (11%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D LG++G+    +     M + G   +   + S+  ++   G+ ++    +  M   G
Sbjct: 487 LIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRG 546

Query: 178 VEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
              D++ +N+ +  + +  E +  RAL F     + + PD  S++IL+ G  K G  ++ 
Sbjct: 547 CSPDLMLLNNYMDCVFKAGEIEKGRAL-FEEIKAQGLTPDVRSYSILIHGLVKGGFSKDT 605

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            K F EM E  +       AY   +    +  +V++A + L  MK +   PT+  + + +
Sbjct: 606 YKLFYEMKE--QGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVI 663

Query: 297 DILVKLNDSTHAVQLW--------DIMMVFH--------------------------GAF 322
           D L K++    A  L+        D+ +V +                          G  
Sbjct: 664 DGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLT 723

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           P++ T+N + + L+K + + E    F  M   +  P  +  +  +  L    +   A   
Sbjct: 724 PNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVF 783

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
           W  + + G+ P   +   ++ GL  +G + + +   E
Sbjct: 784 WQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFE 820



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 110/244 (45%), Gaps = 19/244 (7%)

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVD-----PDGDSFAILLEGWEKEGNVEEANK 238
           A N+LL  + R     +R LE+L ++ + +      P  ++   ++  + K   + EA  
Sbjct: 134 AYNALLMLMAR-----TRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREA-- 186

Query: 239 TFG--EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            FG  E + +F++ P +  AY T +  L    + D  L  LR M+      T+  F+  +
Sbjct: 187 -FGVIETMRKFKFRPAYS-AYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLI 244

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAF-PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
            +  +      A+ L D M     +F  D + YN+  +C  K  +V    KFFHE+    
Sbjct: 245 CVFAREGRVDAALSLLDEMK--SNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQG 302

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
             P  +   + I +L  A+  + A+E++  +  N  +P   + N +++G  ++G+ ++  
Sbjct: 303 LVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAY 362

Query: 416 RFAE 419
              E
Sbjct: 363 SLLE 366


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 139/289 (48%), Gaps = 18/289 (6%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAG 161
           R    G +     +N +V+ + ++G      + +R M+E  V + + T+++I DS C  G
Sbjct: 183 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D A+  F  M   G++  VV  NSL+  +C+       AL   + V + + P+  +F 
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFN 302

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +LL+ + KEG ++EAN+ + EM+ R   +P +++ Y T +       ++ EA   L +M 
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITR-GISP-NIITYNTLMDGYCMQNRLSEANNMLDLMV 360

Query: 282 GENCFPTLKFFSNALD--ILVKLNDSTHAVQLWDIMMVF-----HGAFPDSLTYNMIFEC 334
              C P +  F++ +    +VK  D        D M VF      G   +++TY+++ + 
Sbjct: 361 RNKCSPDIVTFTSLIKGYCMVKRVD--------DGMKVFRNISKRGLVANAVTYSILVQG 412

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
             ++ ++   E+ F EM+ +   P  +     +  L D  + E A+EI+
Sbjct: 413 FCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIF 461



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 143/316 (45%), Gaps = 6/316 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  N+M++   +  +    ++ + +VMK        TF ++       GK  EAV+  D 
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 183

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M  +G + DVV  NS+++ ICR    TS AL+ L ++ ++ V  D  +++ +++   ++G
Sbjct: 184 MVENGCQPDVVTYNSIVNGICRS-GDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++ A   F EM    +     V+ Y + +  L +  + ++    L+ M      P +  
Sbjct: 243 CIDAAISLFKEM--ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVIT 300

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           F+  LD+ VK      A +L+   M+  G  P+ +TYN + +      R+ E       M
Sbjct: 301 FNVLLDVFVKEGKLQEANELYK-EMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           ++N+  P  +   + I         +  ++++  I + G++    + + L+ G    G++
Sbjct: 360 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 419

Query: 412 SDVRRFAEEMLNRRIL 427
                  +EM++  +L
Sbjct: 420 KLAEELFQEMVSHGVL 435



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 82/182 (45%), Gaps = 3/182 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   + RG   +   ++++V    ++G+ +      + M   GVL  + T+  + D  C 
Sbjct: 391 FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCD 450

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            GK ++A+  F+ +    ++  +V   +++  +C+          F +   K V P+  +
Sbjct: 451 NGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 510

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + +++ G  K+G++ EAN    +M E  + N  +   Y T +   +R   +  + K +  
Sbjct: 511 YTVMISGLCKKGSLSEANILLRKMEE--DGNAPNDCTYNTLIRAHLRDGDLTASAKLIEE 568

Query: 280 MK 281
           MK
Sbjct: 569 MK 570


>gi|297843042|ref|XP_002889402.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335244|gb|EFH65661.1| hypothetical protein ARALYDRAFT_470202 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 490

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 160/369 (43%), Gaps = 54/369 (14%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVD 121
           +++ +L+ +GI  + DL+  VL+    S+ +P   ++F+R+AG  RG   S ++ + M+ 
Sbjct: 56  ELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYAGARRGFYHSSFSLDTMLY 115

Query: 122 VLGKNGRFEQMWNA-VRVMKEDGVLSLPTFASI----FDSYCGAGKYDEAVMSFDVMSMH 176
           +LG+N +F+Q+W   +   ++D  L  P    +        C   +  E+   F  +   
Sbjct: 116 ILGRNRKFDQIWEILIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPD 175

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE-------- 228
               D    N+LL  +C QE   + A    + +K    PD  +F ILL GW+        
Sbjct: 176 FF--DTACFNALLRTLC-QEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAF 232

Query: 229 ------------------------KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
                                   K+  +E+A K   +M E  E  P+ V+ Y T +  L
Sbjct: 233 FEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEDE-TPD-VITYTTIIGGL 290

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALD---ILVKLNDSTHAVQLWDIMMVFHGA 321
               Q D+A + L+ MK   C+P +  ++ A+    I  +L D+   V      MV  G 
Sbjct: 291 GLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNYCIARRLGDADKLVD----EMVKKGL 346

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            P++ TYN+ F  L     +    + +  M+ N   P   +C   I M    ++ ++A+ 
Sbjct: 347 SPNATTYNLFFRVLSLANDLGRSWELYERMLGNGCLPNTQSCMFLIKMFKRHEKVDMAMR 406

Query: 382 IWNYILENG 390
           +W  ++  G
Sbjct: 407 LWEDMVVKG 415


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 143/322 (44%), Gaps = 6/322 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F+    +G   S  ++ +++D L KN  F+        MK +GV +   T+  + D  C 
Sbjct: 356 FYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 415

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
            G  DEAV+  + MS  G++ D+V  ++L++  C+   +   A E + R+ ++ + P+G 
Sbjct: 416 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKV-GRFKTAKEIVCRIYRVGLSPNGI 474

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            ++ L+    + G ++EA + +  M+   E +      +   + +L +  +V EA +F+R
Sbjct: 475 IYSTLIYNCCRMGCLKEAIRIYEAMI--LEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMR 532

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M  +   P    F   ++      +   A  ++D M    G  P   TY  + + L K 
Sbjct: 533 CMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKV-GHHPTFFTYGSLLKGLCKG 591

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
             + E EKF   +         +   T +T +  +     A+ ++  +++  ILP   + 
Sbjct: 592 GHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTY 651

Query: 399 NELLVGLRNLGRLSDVRRFAEE 420
             L+ GL   G+      FA+E
Sbjct: 652 TSLISGLCRKGKTVIAILFAKE 673



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 135/308 (43%), Gaps = 4/308 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++++VL   G FE+    ++ M++ G   ++ T+ ++   YC  G++  A+   D M 
Sbjct: 196 FNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMK 255

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             GV+ DV   N L+  +CR        L   +  K+++ P+  ++  L+ G+  EG V 
Sbjct: 256 SKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVL 315

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A++   EM+  F  +P HV  +   +   I      EALK   +M+ +   P+   +  
Sbjct: 316 IASQLLNEMLS-FGLSPNHV-TFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGV 373

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            LD L K N      + + + M  +G     +TY  + + L KN  + E     +EM K+
Sbjct: 374 LLDGLCK-NAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKD 432

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
              P  +  +  I         + A EI   I   G+ P     + L+     +G L + 
Sbjct: 433 GIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEA 492

Query: 415 RRFAEEML 422
            R  E M+
Sbjct: 493 IRIYEAMI 500



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 121/320 (37%), Gaps = 38/320 (11%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G     + +N++V  L K G+  +    +R M  DG+L +  +F  + + Y  +G+  +A
Sbjct: 503 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKA 562

Query: 167 VMSFDVM---------------------------------SMHGVEQ--DVVAVNSLLSA 191
              FD M                                 S+H V    D V  N+LL+A
Sbjct: 563 FSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTA 622

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           +C+  N       F   V++ + PD  ++  L+ G  ++G    A     E   R    P
Sbjct: 623 MCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLP 682

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
             V+ Y  F+  + +  Q    + F   M      P +   +  +D   ++        L
Sbjct: 683 NKVM-YTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDL 741

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
              M   +G  P+  TYN++     K K V      +  +I N   P  L C + +  + 
Sbjct: 742 LPEMGNQNGG-PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGIC 800

Query: 372 DADEPEIAIEIWNYILENGI 391
           +++  EI ++I    +  G+
Sbjct: 801 ESNMLEIGLKILKAFICRGV 820



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 55/278 (19%), Positives = 110/278 (39%), Gaps = 7/278 (2%)

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
           Y   G   +++  F +M ++G    V   N++L ++ +     S        +K+ + PD
Sbjct: 133 YLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPD 192

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +F IL+     EG+ E+++    +M E+  + P  ++ Y T L    +  +   A++ 
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKM-EKSGYAPT-IVTYNTVLHWYCKKGRFKAAIEL 250

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM--VFHGAFPDSLTYNMIFEC 334
           L  MK +     +  ++  +  L + N       L   M   + H   P+ +TYN +   
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIH---PNEVTYNTLING 307

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
                +V    +  +EM+     P  +     I   +     + A++++  +   G+ P 
Sbjct: 308 FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPS 367

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
           E S   LL GL         R F   M    + +  +T
Sbjct: 368 EVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRIT 405



 Score = 45.1 bits (105), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 86/210 (40%), Gaps = 5/210 (2%)

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           FG ++  +     +   Y+  +   +R   + ++L+  R+M      P++ +  NA  IL
Sbjct: 109 FGALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSV-YTCNA--IL 165

Query: 300 VKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
             +  S   V +W  +  M+     PD  T+N++   L       +      +M K+ + 
Sbjct: 166 GSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYA 225

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
           PT +   T +         + AIE+ +++   G+     + N L+  L    R++     
Sbjct: 226 PTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLL 285

Query: 418 AEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
             +M  R I   EVT + L   F NE + +
Sbjct: 286 LRDMRKRMIHPNEVTYNTLINGFSNEGKVL 315



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 83/203 (40%), Gaps = 3/203 (1%)

Query: 149  TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            TF  +    C  G+ + A     VM+  G+  D    ++++S + R        +     
Sbjct: 826  TFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEM 885

Query: 209  VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K+ + P+   +  L+ G  + G+++ A     EM+      P   +A    +  L +  
Sbjct: 886  SKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPN--VAESAMVRALAKCG 943

Query: 269  QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            + DEA   LR M      PT+  F+  + +  K  +   A++L  ++M   G   D ++Y
Sbjct: 944  KADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALEL-RVVMSNCGLKLDLVSY 1002

Query: 329  NMIFECLIKNKRVHEVEKFFHEM 351
            N++   L     +    + + EM
Sbjct: 1003 NVLITGLCAKGDMALAFELYEEM 1025


>gi|308081240|ref|NP_001183570.1| uncharacterized protein LOC100502163 [Zea mays]
 gi|238013140|gb|ACR37605.1| unknown [Zea mays]
          Length = 199

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 63/102 (61%), Gaps = 4/102 (3%)

Query: 96  SSAVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS 152
           +S   FFRWAG    G   SPY+WNL VD+LGKN  FE MW+ V+ M    +LSL TFAS
Sbjct: 13  ASRAAFFRWAGHRHLGHEHSPYSWNLFVDILGKNRLFEPMWDTVKSMHSQQLLSLATFAS 72

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
           +F S   A      + +F  M  +G+ +D  A+NSLLSA+CR
Sbjct: 73  VFSSL-AATPGGSPLKAFMDMPRYGMTRDTAALNSLLSALCR 113


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 157/333 (47%), Gaps = 7/333 (2%)

Query: 83  LVHEVLQLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           L+H +    ++  S AV    R   RG + +   + ++V+ L K G  +  +N +  M+ 
Sbjct: 196 LIHGLFL--HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA 253

Query: 142 DGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
             +  ++  ++++ DS C     D+A+  F  M   GV  +V+  +SL+S +C  E  + 
Sbjct: 254 AKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSD 313

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
            +    + +++ ++P+  +F  L++ + KEG + EA K + EM++R   +P+ +  Y + 
Sbjct: 314 ASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKR-SIDPD-IFTYSSL 371

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +       ++DEA     +M  ++CFP +  ++  ++   K       V+L+   M   G
Sbjct: 372 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFR-EMSQRG 430

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
              +++TY  +     + +     +  F +M+ +   P  +   T +  L    + E A+
Sbjct: 431 LVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAM 490

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSD 413
            ++ Y+  + + P   + N ++ G+   G++ D
Sbjct: 491 VVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVED 523



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/353 (20%), Positives = 150/353 (42%), Gaps = 20/353 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++++   +  +       + ++MK     S+ T +S+ + YC   +  +AV   D 
Sbjct: 121 YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 180

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G   D +   +L+  +    N+ S A+  ++R V++   P+  ++ +++ G  K G
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 239

Query: 232 NVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           +++ A     +M   + E N   V+ Y T + +L + +  D+AL     M+ +   P + 
Sbjct: 240 DIDLAFNLLNKMEAAKIEAN---VVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVI 296

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +S+ +  L      + A +L   M +     P+ +T+N + +  +K  ++ E EK + E
Sbjct: 297 TYSSLISCLCNYERWSDASRLLSDM-IERKINPNVVTFNALIDAFVKEGKLVEAEKLYDE 355

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           MIK    P     ++ I      D  + A  ++  ++     P   + N L+ G     R
Sbjct: 356 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKR 415

Query: 411 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 463
           + +      EM  R ++   VT   L   F+              R C  +QM
Sbjct: 416 IDEGVELFREMSQRGLVGNTVTYTTLIHGFFQ------------ARDCDNAQM 456



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/336 (20%), Positives = 144/336 (42%), Gaps = 6/336 (1%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S + +N ++  + K  +F+ + +    M+  G+  +L T+  + + +C   +   A+   
Sbjct: 84  SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 143

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEK 229
             M   G E  +V ++SLL+  C  + + S A+  ++++ ++   PD  +F  L+ G   
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGK-RISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
                EA      MV+R    P +++ Y   +  L +   +D A   L  M+       +
Sbjct: 203 HNKASEAVALVDRMVQR-GCQP-NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANV 260

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             +S  +D L K      A+ L+   M   G  P+ +TY+ +  CL   +R  +  +   
Sbjct: 261 VIYSTVIDSLCKYRHEDDALNLF-TEMENKGVRPNVITYSSLISCLCNYERWSDASRLLS 319

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           +MI+ +  P  +     I   +   +   A ++++ +++  I P   + + L+ G     
Sbjct: 320 DMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 379

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           RL + +   E M+++      VT + L   F    R
Sbjct: 380 RLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKR 415



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+H   Q + D  ++ + F +    G   +   +N ++D L KNG+ E+       ++  
Sbjct: 441 LIHGFFQ-ARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 499

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
            +  ++ T+  + +  C AGK ++    F  +S+ GV+ DV+  N+++S  CR+
Sbjct: 500 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRK 553



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 134 NAVRVMKE---DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
           NA  V K+   DGV  ++ T+ ++ D  C  GK ++A++ F+ +    +E  +   N ++
Sbjct: 453 NAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMI 512

Query: 190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
             +C+          F +   K V PD   +  ++ G+ ++G  EEA+  F +M E
Sbjct: 513 EGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMRE 568


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 133/289 (46%), Gaps = 5/289 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +VD L K G+  +  + V +M   GV  ++ T+ ++ D +C   + DEAV  FD M 
Sbjct: 280 FSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMV 339

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            +G   +V++ N+L++  C+ +        F    +K + P+  ++  L+ G    G ++
Sbjct: 340 HNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQ 399

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A   F EMV   +  P+ +  Y   L  L +   +DEA+  L+ ++G N  P ++ ++ 
Sbjct: 400 DAIALFHEMVAHGQI-PD-LATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTI 457

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +D + +  +   A  ++   +   G  P+  TY ++   L +   + E  K F EM  N
Sbjct: 458 VIDGMCRAGELEAARDIFS-NLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGN 516

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
              P      T    LL   E   AI++   +L  G    + S   LLV
Sbjct: 517 GCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARG-FSADVSTTTLLV 564



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 123/275 (44%), Gaps = 5/275 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++    C  GK  +A+  FD M   G + +VV   +L++ +C+  N T+ A+  L  
Sbjct: 139 TFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGN-TNAAIRLLRS 197

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +++    PD   +  +++   K+  V EA   F +MV +   +P+ +  Y + + +L   
Sbjct: 198 MEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQ-GISPD-IFTYTSLIHSLCNL 255

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +       L  M      P +  FS  +D L K    T A  + D MM+  G  P+ +T
Sbjct: 256 CEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVD-MMIIRGVEPNVVT 314

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN + +       + E  K F  M+ N + P  ++  T I         + A  ++  + 
Sbjct: 315 YNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMC 374

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
           +  ++P   + N L+ GL ++GRL D      EM+
Sbjct: 375 QKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMV 409



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 135/333 (40%), Gaps = 42/333 (12%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +  S     +Y       + M   G+  DV  +N L+++ C   N+   A   L ++
Sbjct: 70  FNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHL-NRPGFAFSVLAKI 128

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRG 267
            K+ + PD  +F  L+ G   EG + +A   F +M+ E F+ N   V+ Y T +  L + 
Sbjct: 129 LKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPN---VVTYGTLINGLCKV 185

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
              + A++ LR M+  NC P +  +++ +D L K    T A  L+   MV  G  PD  T
Sbjct: 186 GNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFS-KMVGQGISPDIFT 244

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI-----------------TML 370
           Y  +   L        V    ++MI ++  P  +  +T +                  M+
Sbjct: 245 YTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMI 304

Query: 371 LDADEPEI------------------AIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +   EP +                  A+++++ ++ NG  P   S N L+ G   + R+ 
Sbjct: 305 IRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMD 364

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
                 EEM  + ++   VT + L     +  R
Sbjct: 365 KATYLFEEMCQKELIPNTVTYNTLMHGLCHVGR 397



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 136/309 (44%), Gaps = 6/309 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  ++D L K+ +  + +N    M   G+   + T+ S+  S C   ++       + M
Sbjct: 209 VYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQM 268

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
               +  DVV  ++++ A+C+ E + + A + ++  + + V+P+  ++  L++G   +  
Sbjct: 269 INSKIMPDVVIFSTVVDALCK-EGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSE 327

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA K F  MV    + P +V++Y T +    + +++D+A      M  +   P    +
Sbjct: 328 MDEAVKVFDTMVHN-GYAP-NVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTY 385

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +  L  +     A+ L+   MV HG  PD  TY ++ + L K   + E       + 
Sbjct: 386 NTLMHGLCHVGRLQDAIALFH-EMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIE 444

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
            +   P        I  +  A E E A +I++ +   G+ P   +   ++ GL   G L 
Sbjct: 445 GSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLD 504

Query: 413 DVRRFAEEM 421
           +  +   EM
Sbjct: 505 EANKLFMEM 513


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 144/348 (41%), Gaps = 38/348 (10%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGK 162
           RG   +P A  +N +V    + G  +     V +M+E+G    +L TF S+ +  C AG+
Sbjct: 179 RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGR 238

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A   FD M   G+  DVV+ N+LLS  C+          F    ++ + PD  +F  
Sbjct: 239 MEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTS 298

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPE------------------------------ 252
           L+    K GN+E+A     +M ER     E                              
Sbjct: 299 LIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG 358

Query: 253 ---HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
               V+ Y   +    +  ++D A + +R M+ +   P +  +S  +    K+ +   A 
Sbjct: 359 IQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAF 418

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           QL +  M+  G  PD++TY+ +   L + KR+++  + F  M++   QP      T I  
Sbjct: 419 QL-NQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDG 477

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
                  E A+ + + ++  G+LP   + + L+ GL    R  +  R 
Sbjct: 478 HCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRL 525



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 118/240 (49%), Gaps = 8/240 (3%)

Query: 125 KNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K G  EQ    V  M+E G+ ++  TF ++ D +C  G  D+A+++ + M   G++  VV
Sbjct: 305 KAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVV 364

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             N+L++  C+   +   A E +  ++ K V PD  +++ ++ G+ K GN++ A +   +
Sbjct: 365 CYNALINGYCKL-GRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQK 423

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M+++    P+  + Y + +  L   K++++A +    M      P    ++  +D   K 
Sbjct: 424 MLKKGVL-PD-AITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKE 481

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
            +   A+ L D  M+  G  PD +TY+++   L K+ R  E  +   ++   +  P P N
Sbjct: 482 GNVEKALSLHD-EMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED--PVPDN 538



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 117/310 (37%), Gaps = 37/310 (11%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-ENQTSRALEFLN 207
           T+  +  + C  G+ +EAV     M   G   + V  N+L++A CR  E   +  +  L 
Sbjct: 154 TYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLM 213

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           R +    P+  +F  ++ G  K G +E A K F EMV R    P+ V++Y T L    + 
Sbjct: 214 REEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMV-REGLAPD-VVSYNTLLSGYCKV 271

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM------------ 315
             + E+L     M      P +  F++ +    K  +   AV L   M            
Sbjct: 272 GCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTF 331

Query: 316 ----------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
                                 M   G  P  + YN +     K  R+    +   EM  
Sbjct: 332 TALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA 391

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
              +P  +  +T I+        + A ++   +L+ G+LP   + + L+ GL    RL+D
Sbjct: 392 KRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLND 451

Query: 414 VRRFAEEMLN 423
                E ML 
Sbjct: 452 ACELFENMLQ 461



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 3/181 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + S   +N +++   K GR +     +R M+   V   + T+++I   YC  G  D A
Sbjct: 358 GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSA 417

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
                 M   GV  D +  +SL+  +C ++        F N ++  V PD  ++  L++G
Sbjct: 418 FQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDG 477

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             KEGNVE+A     EM+ +    P+ V+ Y   +  L +  +  EA + L  +  E+  
Sbjct: 478 HCKEGNVEKALSLHDEMIRKGVL-PD-VVTYSVLINGLSKSARTKEAHRLLFKLYHEDPV 535

Query: 287 P 287
           P
Sbjct: 536 P 536



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 95/250 (38%), Gaps = 39/250 (15%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M  HGV  +V   N L+ A+C +                                   G 
Sbjct: 143 MLRHGVAPNVYTYNILVRALCAR-----------------------------------GR 167

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKF 291
           +EEA    G+M  R      + + Y T +    R  ++D A + + +M+ E N  P L  
Sbjct: 168 LEEAVGVVGDM--RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVT 225

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           F++ ++ L K      A +++D  MV  G  PD ++YN +     K   +HE    F EM
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFD-EMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM 284

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
            +    P  +   + I     A   E A+ +   + E G+   E +   L+ G    G L
Sbjct: 285 TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFL 344

Query: 412 SDVRRFAEEM 421
            D     EEM
Sbjct: 345 DDALLAVEEM 354



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/197 (19%), Positives = 82/197 (41%), Gaps = 5/197 (2%)

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +V  Y   +  L    +++EA+  +  M+G  C P    ++  +    +  +   A ++ 
Sbjct: 151 NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 210

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
            +M     A P+ +T+N +   L K  R+    K F EM++    P  ++  T ++    
Sbjct: 211 SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCK 270

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
                 ++ +++ + + G++P   +   L+      G L        +M  R + + EVT
Sbjct: 271 VGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT 330

Query: 433 MHKL-----KKAFYNES 444
              L     KK F +++
Sbjct: 331 FTALIDGFCKKGFLDDA 347


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 149/353 (42%), Gaps = 9/353 (2%)

Query: 95  PSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151
           P  A+ FF WAG   G +   +++N ++D+L K+G   +     + +   G   +L TF 
Sbjct: 7   PDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFK 66

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
            +    C AG+   A+     +    V  DV   N L+  + +  N       F N    
Sbjct: 67  ILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESS 126

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL-ITLIRGKQV 270
            V+PD  ++  ++ G  K GN+E+A +   EM+ R   +   ++ Y T +   + +   V
Sbjct: 127 RVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDV 186

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
           +EAL+ L  MK     P +  +++ +  L        A ++   M       PD +T+N 
Sbjct: 187 EEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM----SCSPDLVTFNT 242

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           + +   K   +    +   EM +    P  +     +  L    + ++A  +   I+  G
Sbjct: 243 LLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQG 302

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF-YN 442
            +P   +   L+ GL   G + +  +  +EM  R IL   V+++ +   F YN
Sbjct: 303 YIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYN 355



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 24/364 (6%)

Query: 94  SPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP--- 148
           +P  AV  F       R++P  + +N ++  L K+G  E+    +  M   G  S P   
Sbjct: 112 NPDQAVKLFENM-ESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIV 170

Query: 149 TFASIFDS-YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           T+ ++ ++  C  G  +EA+   D M + G   DV+  NS++ A+C    +   A E L 
Sbjct: 171 TYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALC-VAGRVVEAAEILK 229

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +     PD  +F  LL+G+ K G +  A +   EM  R    P+ V+ Y   +  L R 
Sbjct: 230 TMS--CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMC-RENILPD-VITYTILVNGLCRV 285

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--------MVFH 319
            QV  A   L  +  +   P +  +++ +D L K  +   A +L   M        MV  
Sbjct: 286 GQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSI 345

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
              P   TYN++   LIK+  + +      +++   + P  +   T I  L  A+    A
Sbjct: 346 NMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREA 405

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHK 435
            ++ + +   G  P + +   ++ GL  +GR+ D      EM  +R    +++Y   +  
Sbjct: 406 CDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDG 465

Query: 436 LKKA 439
           L K+
Sbjct: 466 LCKS 469



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 143/340 (42%), Gaps = 19/340 (5%)

Query: 121 DVLGKNGRFEQMWNAVRVMKEDGVLS-------LPTFASIFDSYCGAGKYDEAVMSFDVM 173
           DV+  N     +  A RV++   +L        L TF ++ D +C AG    A+   + M
Sbjct: 204 DVITYNSIIHALCVAGRVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEM 263

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
               +  DV+    L++ +CR   Q   A   L   V++   PD  ++  L++G  K G 
Sbjct: 264 CRENILPDVITYTILVNGLCRV-GQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGE 322

Query: 233 VEEANKTFGEMVERFEWNPEHV--------LAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +EEA+K   EM  R E   E V          Y   L  LI+   + +A+  +  +    
Sbjct: 323 IEEAHKLVKEMSAR-EILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARG 381

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P +  ++  +D L K N    A  L D M    G FP+ +T   +   L +  RV + 
Sbjct: 382 YVPDVVTYNTLIDGLCKANRVREACDLADEMASL-GCFPNDVTLGSVVFGLCRVGRVDDA 440

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
                EM +    P  +   + I  L  +D  + A  + + +   G+   + +  +L+V 
Sbjct: 441 WSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVS 500

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           + + GR+++     +EM+ R  L    T   L++A  + S
Sbjct: 501 MIHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNS 540


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 144/348 (41%), Gaps = 38/348 (10%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGK 162
           RG   +P A  +N +V    + G  +     V +M+E+G    +L TF S+ +  C AG+
Sbjct: 179 RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGR 238

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A   FD M   G+  DVV+ N+LLS  C+          F    ++ + PD  +F  
Sbjct: 239 MEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTS 298

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPE------------------------------ 252
           L+    K GN+E+A     +M ER     E                              
Sbjct: 299 LIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG 358

Query: 253 ---HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
               V+ Y   +    +  ++D A + +R M+ +   P +  +S  +    K+ +   A 
Sbjct: 359 IQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAF 418

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           QL +  M+  G  PD++TY+ +   L + KR+++  + F  M++   QP      T I  
Sbjct: 419 QL-NQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDG 477

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
                  E A+ + + ++  G+LP   + + L+ GL    R  +  R 
Sbjct: 478 HCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRL 525



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 120/246 (48%), Gaps = 8/246 (3%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++    K G  EQ    V  M+E G+ ++  TF ++ D +C  G  D+A+++ + M   G
Sbjct: 299 LIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG 358

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEA 236
           ++  VV  N+L++  C+   +   A E +  ++ K V PD  +++ ++ G+ K GN++ A
Sbjct: 359 IQPSVVCYNALINGYCKL-GRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSA 417

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            +   +M+++    P+  + Y + +  L   K++++A +    M      P    ++  +
Sbjct: 418 FQLNQKMLKKGVL-PD-AITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLI 475

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
           D   K  +   A+ L D  M+  G  PD +TY+++   L K+ R  E  +   ++   + 
Sbjct: 476 DGHCKEGNVEKALSLHD-EMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED- 533

Query: 357 QPTPLN 362
            P P N
Sbjct: 534 -PVPDN 538



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 115/310 (37%), Gaps = 37/310 (11%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-ENQTSRALEFLN 207
           T+  +  + C  G+ +EAV     M   G   + V  N+L++A CR  E   +  +  L 
Sbjct: 154 TYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLM 213

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           R +    P+  +F  ++ G  K G +E A K F EMV   E     V++Y T L    + 
Sbjct: 214 REEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVR--EGLAPDVVSYNTLLSGYCKV 271

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM------------ 315
             + E+L     M      P +  F++ +    K  +   AV L   M            
Sbjct: 272 GCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTF 331

Query: 316 ----------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
                                 M   G  P  + YN +     K  R+    +   EM  
Sbjct: 332 TALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA 391

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
              +P  +  +T I+        + A ++   +L+ G+LP   + + L+ GL    RL+D
Sbjct: 392 KRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLND 451

Query: 414 VRRFAEEMLN 423
                E ML 
Sbjct: 452 ACELFENMLQ 461



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 3/181 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + S   +N +++   K GR +     +R M+   V   + T+++I   YC  G  D A
Sbjct: 358 GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSA 417

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
                 M   GV  D +  +SL+  +C ++        F N ++  V PD  ++  L++G
Sbjct: 418 FQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDG 477

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             KEGNVE+A     EM+ +    P+ V+ Y   +  L +  +  EA + L  +  E+  
Sbjct: 478 HCKEGNVEKALSLHDEMIRKGVL-PD-VVTYSVLINGLSKSARTKEAHRLLFKLYHEDPV 535

Query: 287 P 287
           P
Sbjct: 536 P 536



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 95/250 (38%), Gaps = 39/250 (15%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M  HGV  +V   N L+ A+C +                                   G 
Sbjct: 143 MLRHGVAPNVYTYNILVRALCAR-----------------------------------GR 167

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKF 291
           +EEA    G+M  R      + + Y T +    R  ++D A + + +M+ E N  P L  
Sbjct: 168 LEEAVGVVGDM--RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVT 225

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           F++ ++ L K      A +++D  MV  G  PD ++YN +     K   +HE    F EM
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFD-EMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM 284

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
            +    P  +   + I     A   E A+ +   + E G+   E +   L+ G    G L
Sbjct: 285 TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFL 344

Query: 412 SDVRRFAEEM 421
            D     EEM
Sbjct: 345 DDALLAVEEM 354



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/197 (19%), Positives = 82/197 (41%), Gaps = 5/197 (2%)

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +V  Y   +  L    +++EA+  +  M+G  C P    ++  +    +  +   A ++ 
Sbjct: 151 NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 210

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
            +M     A P+ +T+N +   L K  R+    K F EM++    P  ++  T ++    
Sbjct: 211 SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCK 270

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
                 ++ +++ + + G++P   +   L+      G L        +M  R + + EVT
Sbjct: 271 VGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT 330

Query: 433 MHKL-----KKAFYNES 444
              L     KK F +++
Sbjct: 331 FTALIDGFCKKGFLDDA 347


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 141/302 (46%), Gaps = 11/302 (3%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + ++ + +C AG+ D+A    D M   GV+ DV+  ++L+  +CR+  +   ALE    +
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRK-GRIDEALEQFKSM 60

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE----WNPEHVLAYETFLITLI 265
            +   P+  ++  ++ G  K   ++E  + F +M +R+E      P+ V++Y T +  L 
Sbjct: 61  GEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPD-VISYSTVIDALC 119

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG--AFP 323
           + ++VD+A ++ + M+   C P +  +S+ +D L K++    A   + ++M   G    P
Sbjct: 120 KAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEA---YSLLMQLKGEDMVP 176

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
            ++ YN +     +  +  E  +    M +  +    ++    +  L   DE E A + +
Sbjct: 177 RAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFF 236

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
             +L++G  P   + N  + GL   G++ +  R   EM+  ++    +T   +   F   
Sbjct: 237 ERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKA 296

Query: 444 SR 445
            R
Sbjct: 297 GR 298



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 151/323 (46%), Gaps = 10/323 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RG ++     + ++  L + GR ++     + M E+   ++ T+ ++ +  C A + DE 
Sbjct: 28  RGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECSPNVITYNTVVNGLCKANRIDEG 87

Query: 167 VMSFDVM-----SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           +  FD M     + HG E DV++ ++++ A+C+ + +  +A E+  R++ +   P+  ++
Sbjct: 88  LELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQ-RVDKAYEYFKRMRAVGCAPNVVTY 146

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           + L++G  K   V+EA     ++  + E      + Y   +    R  +  E L+ L  M
Sbjct: 147 SSLIDGLCKVDRVDEAYSLLMQL--KGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHM 204

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
           K +     +  F+  L  L K ++   A Q ++ ++   G  P+ +TYN+    L K  +
Sbjct: 205 KEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLK-SGKKPNVVTYNVAVHGLCKAGK 263

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           V E  +   EM++++  P  +  ++ I     A   + A +++  ++ +  +P   +   
Sbjct: 264 VDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMT 323

Query: 401 LLVGLRNLGRLSDVRRFAEEMLN 423
           LL G     +  +  R  E+M+N
Sbjct: 324 LLHGFSEHKKSREAFRVHEDMVN 346



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 139/341 (40%), Gaps = 30/341 (8%)

Query: 93  DSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTF 150
           D    A  FF R    G++ +   +N+ V  L K G+ ++ +  +  M E  V   + T+
Sbjct: 227 DEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITY 286

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
           +SI D +C AG+ D+A   F  M +H      V   +LL      E++ SR  E     +
Sbjct: 287 SSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGF--SEHKKSR--EAFRVHE 342

Query: 211 KIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
            +V+    P   ++ +L++      +VE A + + +M +R +  P+    Y   +  L R
Sbjct: 343 DMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKM-KRKKRQPD-ANTYAPLIQCLCR 400

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM----------- 315
            ++VDEA +FL VM+ +N  P        +++L K  +   A  + D +           
Sbjct: 401 ARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDE 460

Query: 316 -------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 368
                  MV  G  PD  TY  +   L    RV      F +M      P  +     I 
Sbjct: 461 AVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIG 520

Query: 369 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
               AD  + A  I+  ++  G  P   +   L   LR+ G
Sbjct: 521 EACSADMADDAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAG 561



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 149/340 (43%), Gaps = 25/340 (7%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
           +G+ + P A  +N +V+   + G+  +    +  MKE G  +++  F ++  +     + 
Sbjct: 170 KGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQ 229

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           ++A   F+ +   G + +VV  N  +  +C+           L  V+  V PD  +++ +
Sbjct: 230 EKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSI 289

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G+ K G +++A+  F  M+   E  P H + + T L      K+  EA +    M   
Sbjct: 290 IDGFCKAGRMDKADDVFTRMMVH-ECIP-HPVTFMTLLHGFSEHKKSREAFRVHEDMVNA 347

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P L+ ++  +D +   +    A++++   M      PD+ TY  + +CL + +RV E
Sbjct: 348 GFIPGLQTYNVLMDCVCGADSVESALEIYH-KMKRKKRQPDANTYAPLIQCLCRARRVDE 406

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITML------------LD-------ADEPEIAIEIWN 384
            ++F   M  +   P    C   + +L            LD       A EP+ A+E+  
Sbjct: 407 AKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIE 466

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            ++  G+ P EA+   +L  L  L R+       E+M +R
Sbjct: 467 QMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASR 506



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 138/315 (43%), Gaps = 6/315 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVLSLPTFASIFDSYCG 159
           F R    G   +   ++ ++D L K  R ++ ++ +  +K ED V     + ++ + +  
Sbjct: 131 FKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKR 190

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGD 218
            GK  E +     M   G   +++  N++L A+ + + Q  +A +F  R+ K    P+  
Sbjct: 191 QGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQ-EKACQFFERLLKSGKKPNVV 249

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ + + G  K G V+EA +   EMVE  +  P+ V+ Y + +    +  ++D+A     
Sbjct: 250 TYNVAVHGLCKAGKVDEAYRILLEMVES-KVTPD-VITYSSIIDGFCKAGRMDKADDVFT 307

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M    C P    F   L    +   S  A ++ + M V  G  P   TYN++ +C+   
Sbjct: 308 RMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDM-VNAGFIPGLQTYNVLMDCVCGA 366

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
             V    + +H+M + + QP     A  I  L  A   + A E  + +  + ++P  A  
Sbjct: 367 DSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAIC 426

Query: 399 NELLVGLRNLGRLSD 413
           + L+  L   G + +
Sbjct: 427 HALVEVLCKQGEVDE 441


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 152/362 (41%), Gaps = 43/362 (11%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++  +++ L + G+ ++ +     M + G+  +  T+  +   YC +GK  EA+  F  M
Sbjct: 208 SYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKM 267

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              GVE DVV  N+L+  +C+          F + VKK   PD   +  LL G+  EG +
Sbjct: 268 CRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYL 327

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            + ++    MV R    P+H + +   +    +   VDEA+     M+ +   P +  + 
Sbjct: 328 VQMHQLLDVMV-RNGTQPDHYI-FNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYG 385

Query: 294 NALDILV---KLNDSTH-------------------------AVQLWD------IMMVFH 319
             +D L    K++D+                           A   WD      + M+  
Sbjct: 386 TVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGR 445

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI-TMLLDADEPEI 378
           G  P+++ +N +   L K   V   +  F  M++ + Q   +   T I    LD    E 
Sbjct: 446 GICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDE- 504

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDV----RRFAEEMLNRRILIYEVTMH 434
           A ++   ++ +G+ P E + N ++ G    GR+ D     R+ A + +N  I+IY   +H
Sbjct: 505 ATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILH 564

Query: 435 KL 436
            L
Sbjct: 565 GL 566



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 111/247 (44%), Gaps = 17/247 (6%)

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           +NS LSA+ R+    + AL   NR+ +    D  +++I++    + G+++ A    G ++
Sbjct: 69  LNSALSAVARES--PAVALSLFNRMPR---ADLCTYSIVIGCCSRAGHLDLAFAALGRVI 123

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LRVMKGENCFPTLKFFSNALDILVKLN 303
            R  W  +  + +   L  L   K+  +A+   LR M    C P    ++  L  L   N
Sbjct: 124 -RTGWTAQ-AITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDEN 181

Query: 304 DSTHAVQLWDIMM---VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
            S  A+ L   MM      G  PD ++Y  +   L++  ++ +    F EM+     P  
Sbjct: 182 RSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSP-- 239

Query: 361 LNCATAITML---LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
            NC T   +L     + +P+ AI I+  +  +G+ P   + N L+V L   GR  + R+ 
Sbjct: 240 -NCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKV 298

Query: 418 AEEMLNR 424
            + M+ +
Sbjct: 299 FDSMVKK 305



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/321 (17%), Positives = 121/321 (37%), Gaps = 72/321 (22%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G +   Y +N+++    K+G  ++   A   M++ G+  ++ T+ ++ D+ C  GK D+A
Sbjct: 341 GTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDA 400

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICR-------------------------------- 194
           +  FD +   G+  + V   +L+  +C                                 
Sbjct: 401 MSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNH 460

Query: 195 --QENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
             +E   +RA    + + ++ V  D  ++  L++G+  +G V+EA K    MV   +   
Sbjct: 461 LCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMV--LDGVK 518

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            + + Y T +    +  ++++A    R M  +   P +  +S  L  L +      A +L
Sbjct: 519 PNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKEL 578

Query: 312 W-----------------------------DIMMVFHGA-----FPDSLTYNMIFECLIK 337
           +                             D + +FH          + T+N++ + L+K
Sbjct: 579 YLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLK 638

Query: 338 NKRVHEVEKFFHEMIKNEWQP 358
             R  E +  F  ++     P
Sbjct: 639 GGRHDEAKDLFASLLARGLVP 659



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 129/306 (42%), Gaps = 5/306 (1%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYD 164
           GRG   +   +N +++ L K G   +  N   +M + D    + T+ ++ D YC  GK D
Sbjct: 444 GRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVD 503

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA    + M + GV+ + V  N++++  C+          F     K V+P    ++ +L
Sbjct: 504 EATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTIL 563

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  +   +  A + +  M++     P  +  Y   L  L +    D+AL+    +   +
Sbjct: 564 HGLFQTRRIAAAKELYLWMIKCGIKLP--IGTYNIILQGLCQNNCTDDALRMFHNLCLID 621

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
                + F+  +D L+K      A  L+  ++   G  P+ +TY ++ + LI+   + E+
Sbjct: 622 FHLQNRTFNIMIDALLKGGRHDEAKDLFASLLA-RGLVPNVVTYWLMMKSLIEQGLLEEL 680

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
           +  F  + KN            +  L    E   A    + I EN    LEAS  E LV 
Sbjct: 681 DDLFLSLEKNGCTADSRMLNALVGKLPQKGEVRKAGVYLSKIDENN-FSLEASTAESLVF 739

Query: 405 LRNLGR 410
           L + G+
Sbjct: 740 LVSSGK 745


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 139/289 (48%), Gaps = 18/289 (6%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAG 161
           R    G +     +N +V+ + ++G      + +R M+E  V + + T+++I DS C  G
Sbjct: 183 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D A+  F  M   G++  VV  NSL+  +C+       AL   + V + + P+  +F 
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFN 302

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +LL+ + KEG ++EAN+ + EM+ R   +P +++ Y T +       ++ EA   L +M 
Sbjct: 303 VLLDVFVKEGKLQEANELYKEMITR-GISP-NIITYNTLMDGYCMQNRLSEANNMLDLMV 360

Query: 282 GENCFPTLKFFSNALD--ILVKLNDSTHAVQLWDIMMVF-----HGAFPDSLTYNMIFEC 334
              C P +  F++ +    +VK  D        D M VF      G   +++TY+++ + 
Sbjct: 361 RNKCSPDIVTFTSLIKGYCMVKRVD--------DGMKVFRNISKRGLVANAVTYSILVQG 412

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
             ++ ++   E+ F EM+ +   P  +     +  L D  + E A+EI+
Sbjct: 413 FCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIF 461



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 143/316 (45%), Gaps = 6/316 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y  N+M++   +  +    ++ + +VMK        TF ++       GK  EAV+  D 
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 183

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M  +G + DVV  NS+++ ICR    TS AL+ L ++ ++ V  D  +++ +++   ++G
Sbjct: 184 MVENGCQPDVVTYNSIVNGICRS-GDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++ A   F EM    +     V+ Y + +  L +  + ++    L+ M      P +  
Sbjct: 243 CIDAAISLFKEM--ETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVIT 300

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           F+  LD+ VK      A +L+   M+  G  P+ +TYN + +      R+ E       M
Sbjct: 301 FNVLLDVFVKEGKLQEANELYK-EMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           ++N+  P  +   + I         +  ++++  I + G++    + + L+ G    G++
Sbjct: 360 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 419

Query: 412 SDVRRFAEEMLNRRIL 427
                  +EM++  +L
Sbjct: 420 KLAEELFQEMVSHGVL 435



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 82/182 (45%), Gaps = 3/182 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   + RG   +   ++++V    ++G+ +      + M   GVL  + T+  + D  C 
Sbjct: 391 FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCD 450

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            GK ++A+  F+ +    ++  +V   +++  +C+          F +   K V P+  +
Sbjct: 451 NGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMT 510

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + +++ G  K+G++ EAN    +M E  + N  +   Y T +   +R   +  + K +  
Sbjct: 511 YTVMISGLCKKGSLSEANILLRKMEE--DGNAPNDCTYNTLIRAHLRDGDLTASAKLIEE 568

Query: 280 MK 281
           MK
Sbjct: 569 MK 570


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 161/370 (43%), Gaps = 11/370 (2%)

Query: 81  PDLV-HEVLQLSYDSPSSAVDFFRW--AGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNA 135
           PD+V +  L  +Y S     + F    A  G+  SP  Y +N +++ L K+G++E+    
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327

Query: 136 VRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
              M   G+     T+ S+    C  G   E    F  M    V  D+V  +S++S   R
Sbjct: 328 FAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTR 387

Query: 195 QENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
             N   +AL + N VK+  + PD   + IL++G+ ++G +  A     EM++  +     
Sbjct: 388 SGN-LDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQ--QGCAMD 444

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V+ Y T L  L + K + EA K    M     FP     +  +D   KL +  +A++L+ 
Sbjct: 445 VVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQ 504

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
            M        D +TYN + +   K   +   ++ + +M+  E  PTP++ +  +  L   
Sbjct: 505 KMKEKRIRL-DVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSK 563

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 433
                A  +W+ ++   I P     N ++ G    G  SD   F E+M++   +   ++ 
Sbjct: 564 GHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISY 623

Query: 434 HKLKKAFYNE 443
           + L   F  E
Sbjct: 624 NTLIYGFVRE 633



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 152/326 (46%), Gaps = 14/326 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  ++ Y  N+MV+ L K+G+ E++   +  ++E GV   + T+ ++  +Y   G  +EA
Sbjct: 230 GVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEA 289

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLE 225
               + M   G    V   N++++ +C+   +  RA E F   ++  + PD  ++  LL 
Sbjct: 290 FELMNAMPGKGFSPGVYTYNTVINGLCKH-GKYERAKEVFAEMLRSGLSPDSTTYRSLLM 348

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K+G+V E  K F +M  R +  P+ ++ + + +    R   +D+AL +   +K    
Sbjct: 349 EACKKGDVVETEKVFSDMRSR-DVVPD-LVCFSSMMSLFTRSGNLDKALMYFNSVKEAGL 406

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    ++  +    +    + A+ L + M+   G   D +TYN I   L K K + E +
Sbjct: 407 IPDNVIYTILIQGYCRKGMISVAMNLRNEMLQ-QGCAMDVVTYNTILHGLCKRKMLGEAD 465

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDA----DEPEIAIEIWNYILENGILPLEASANEL 401
           K F+EM +    P     +  +T+L+D        + A+E++  + E  I     + N L
Sbjct: 466 KLFNEMTERALFPD----SYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTL 521

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRIL 427
           L G   +G +   +    +M+++ IL
Sbjct: 522 LDGFGKVGDIDTAKEIWADMVSKEIL 547



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 129/312 (41%), Gaps = 8/312 (2%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFDVMSMHG 177
           M+ +  ++G  ++       +KE G++      +I    YC  G    A+   + M   G
Sbjct: 381 MMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQG 440

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
              DVV  N++L  +C+++        F    ++ + PD  +  IL++G  K GN++ A 
Sbjct: 441 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAM 500

Query: 238 KTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
           + F +M E R   +   V+ Y T L    +   +D A +    M  +   PT   +S  +
Sbjct: 501 ELFQKMKEKRIRLD---VVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILV 557

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
           + L        A ++WD  M+     P  +  N + +   ++    + E F  +MI   +
Sbjct: 558 NALCSKGHLAEAFRVWD-EMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGF 616

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILE--NGILPLEASANELLVGLRNLGRLSDV 414
            P  ++  T I   +  +    A  +   + E   G++P   + N +L G     ++ + 
Sbjct: 617 VPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEA 676

Query: 415 RRFAEEMLNRRI 426
                +M+ R +
Sbjct: 677 EVVLRKMIERGV 688



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 95/246 (38%), Gaps = 3/246 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T   + D +C  G    A+  F  M    +  DVV  N+LL    +  +  +    + + 
Sbjct: 482 TLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADM 541

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V K + P   S++IL+     +G++ EA + + EM+ +    P  V+   + +    R  
Sbjct: 542 VSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISK-NIKPT-VMICNSMIKGYCRSG 599

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-PDSLT 327
              +   FL  M  E   P    ++  +   V+  + + A  L   M    G   PD  T
Sbjct: 600 NASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFT 659

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN I     +  ++ E E    +MI+    P        I   +  D    A  I + +L
Sbjct: 660 YNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEML 719

Query: 388 ENGILP 393
           + G  P
Sbjct: 720 QRGFSP 725


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 150/317 (47%), Gaps = 6/317 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R +   ++ ++D L ++   ++    +  M   G   +  T+ ++ ++  G G+  EA
Sbjct: 96  GFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEA 155

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS--RALEFLNRVKKIVDPDGDSFAILL 224
               + M+ +G   +++    ++  +C++    +  R ++ +  ++  + PD  +F  +L
Sbjct: 156 FSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVL 215

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G  KE  + +A+  F   +ER    P +V+ Y T +  L +  ++DEAL+ L  M    
Sbjct: 216 DGLCKEQRILDAHNVFKRALER-GCRP-NVVTYSTLIDGLSKMAKMDEALQLLAKMVELG 273

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C      +S  +D L+K+     AV +    M   G  PD++TYN + +   K +R+ E 
Sbjct: 274 CRANTVTYSTVVDGLLKVGRMEDAVVVLR-QMRDAGCLPDAVTYNTLIDGFFKRQRLREA 332

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
                EM++  + P+ +   T    L  +   + A+EI +Y+   G  P   + + ++ G
Sbjct: 333 VGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDG 392

Query: 405 LRNLGRLSDVRRFAEEM 421
           L   GR+++   + E+M
Sbjct: 393 LCKAGRVTEALGYFEKM 409



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 123/279 (44%), Gaps = 5/279 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R +   ++ +VD L K GR E     +R M++ G L    T+ ++ D +    +  EA
Sbjct: 273 GCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREA 332

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
           V     M   G    VV   +L   +CR   +   A+E L+ +  +   P+  +++ +++
Sbjct: 333 VGLLREMLEAGFHPSVVTYTTLCHGLCRS-GRFDEAVEILDYMAARGCAPNAITYSSIVD 391

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K G V EA   F +M  R E    HV+AY   +  L +  ++DEA +FL  M     
Sbjct: 392 GLCKAGRVTEALGYFEKMA-RDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGR 450

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P +  FS  ++ L         ++L+   M   G  PD +TY  + + L +  RV E  
Sbjct: 451 IPDVVTFSILINGLCDAGRIDTGLELFR-GMAERGCVPDMVTYATLVDRLCRASRVDEAF 509

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
             F +M  +   P      T I  LL+ +  E A  I +
Sbjct: 510 DLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQD 548



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 128/329 (38%), Gaps = 37/329 (11%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + D  C + K D+A+  F  M    +  DVV   +L+  + +Q         F     K 
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             P   ++  +++G  K G +E A   + +M   F + P  V+ Y T +  L R  +VD+
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPT-VVTYSTLIDGLCRDHEVDK 119

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM----------------- 315
             K L  M G  C P    ++  ++ L+    S  A  L + M                 
Sbjct: 120 GCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIK 179

Query: 316 -------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
                              M+  G  PD +T+N + + L K +R+ +    F   ++   
Sbjct: 180 GLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGC 239

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
           +P  +  +T I  L    + + A+++   ++E G      + + ++ GL  +GR+ D   
Sbjct: 240 RPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVV 299

Query: 417 FAEEMLNRRILIYEVTMHKLKKAFYNESR 445
              +M +   L   VT + L   F+   R
Sbjct: 300 VLRQMRDAGCLPDAVTYNTLIDGFFKRQR 328



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 127/287 (44%), Gaps = 7/287 (2%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
           LSP    +N ++D L K  R     N  +   E G   ++ T++++ D      K DEA+
Sbjct: 204 LSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEAL 263

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEG 226
                M   G   + V  ++++  + +   +   A+  L +++     PD  ++  L++G
Sbjct: 264 QLLAKMVELGCRANTVTYSTVVDGLLKV-GRMEDAVVVLRQMRDAGCLPDAVTYNTLIDG 322

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + K   + EA     EM+E   ++P  V+ Y T    L R  + DEA++ L  M    C 
Sbjct: 323 FFKRQRLREAVGLLREMLEA-GFHPS-VVTYTTLCHGLCRSGRFDEAVEILDYMAARGCA 380

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P    +S+ +D L K    T A+  ++ M       P  + Y+ + + L K  ++ E  +
Sbjct: 381 PNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYE 440

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           F   MI+    P  +  +  I  L DA   +  +E++  + E G +P
Sbjct: 441 FLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVP 487



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 74/147 (50%), Gaps = 5/147 (3%)

Query: 96  SSAVDFFRWAGRGQRLSPY--AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFAS 152
           + A+ +F    R + ++P+  A++ ++D L K G+ ++ +  + R+++   +  + TF+ 
Sbjct: 400 TEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSI 459

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK- 211
           + +  C AG+ D  +  F  M+  G   D+V   +L+  +CR  ++   A +   +++  
Sbjct: 460 LINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRA-SRVDEAFDLFQQMRSD 518

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANK 238
            + PD  +   ++ G  +    E+A +
Sbjct: 519 GLSPDRSTRRTMIHGLLEVNRDEDAKR 545


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 157/357 (43%), Gaps = 35/357 (9%)

Query: 89  QLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSL 147
           QL+Y+       F +   RG     + +++++  L K G  ++    +  ++E GV L++
Sbjct: 55  QLAYEK------FQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNV 108

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFL 206
            T++ + D  C A + D+A+  F  MS  G    DVV  NSLL  +C  E  +   + F 
Sbjct: 109 ITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFE 168

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
              K   +P+  S++ LL+G  K G ++EA + + EMVE+    P+ ++AY +F+  L +
Sbjct: 169 YMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEK-SCVPD-LVAYTSFVTGLCK 226

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM----------- 315
             +V EA    R M  +        FS  + IL K     HA +  + M           
Sbjct: 227 ANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCK---KGHAEEAQNQMIEHLCRSGMLD 283

Query: 316 --------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
                   M+     P +  +N +   + K+KR+ +    F  M   +    P N  T  
Sbjct: 284 EACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYN 343

Query: 368 TM---LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            M   L  A + + A E+ N +   G+ P   + + L+ GL  LG+L       EEM
Sbjct: 344 IMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEM 400



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 151/354 (42%), Gaps = 29/354 (8%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +G +    A++ ++ +L K G  E+  N                  + +  C +G  DEA
Sbjct: 243 KGSKADAVAFSTVIGILCKKGHAEEAQN-----------------QMIEHLCRSGMLDEA 285

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAI 222
             +F+ M            N+L+ A+C+ +      L F  R+K + +    P+ +++ I
Sbjct: 286 CKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLF-QRMKSMKEFYCPPNLETYNI 344

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +++   K   ++EA +   EM   +  +P+ V+ Y   +  L +  ++D A   L  M  
Sbjct: 345 MVDNLCKAKQLDEAQELVNEMAN-YGLSPD-VVTYSALVDGLCKLGKLDRACDLLEEMSK 402

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           E  FP     ++ L+ L K     +A+   + M    G+ PD +TYN + + L K  R+ 
Sbjct: 403 EGVFPDSFTDASILNALSKAGKVDYALSHLETMKA-RGSTPDLVTYNTLLDGLCKAGRID 461

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E   F  +M+  +  P   +    IT L  + +   A  I+  +++ G+LP     + LL
Sbjct: 462 EAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLL 521

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
            GL   G    +   A E+L   +   +  MHK+      ++    D  + +ER
Sbjct: 522 DGLARNG----LEDLALELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVER 571



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 136/293 (46%), Gaps = 12/293 (4%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L T+  + D+ C A + DEA    + M+ +G+  DVV  ++L+  +C+   +  RA + 
Sbjct: 338 NLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKL-GKLDRACDL 396

Query: 206 LNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L  + K+ V PD  + A +L    K G V+ A      M  R   +   ++ Y T L  L
Sbjct: 397 LEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKAR--GSTPDLVTYNTLLDGL 454

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            +  ++DEA+ FL  M    C P +  ++  +  L +   +  A  ++   MV  G  PD
Sbjct: 455 CKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQ-EMVKRGVLPD 513

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIW 383
           ++ Y+ + + L +N     +E    E++K    +P  +     +  L  A + E A E+ 
Sbjct: 514 TVLYHSLLDGLARNG----LEDLALELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVV 569

Query: 384 NYILENGILPLEA-SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 435
             + + G  P +A +   ++ GLR LG++   R+  ++       +  ++M K
Sbjct: 570 ERMADAG-FPADAFTYINVVRGLRKLGKVDKARQLVDDASETHTSVERLSMEK 621



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 100/265 (37%), Gaps = 38/265 (14%)

Query: 161 GKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           GK    V  FD +    G +  V   N  L A+ +         +F    ++   PD  +
Sbjct: 16  GKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFT 75

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           ++I+L G  K G +++A +  G++  R      +V+ Y   +    +  +VD+AL+  + 
Sbjct: 76  YSIVLRGLCKAGELDKAKELLGQL--RESGVKLNVITYSVVIDGCCKASRVDDALEIFKT 133

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M                                       G  PD +T+N + + L   +
Sbjct: 134 MSAGG-----------------------------------GCVPDVVTFNSLLKGLCSGE 158

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           R+ E    F  M K   +P  ++ +T +  L  A   + A  +W  ++E   +P   +  
Sbjct: 159 RMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYT 218

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNR 424
             + GL    R+++      +M+ +
Sbjct: 219 SFVTGLCKANRVAEACDCCRKMVTK 243



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 8/197 (4%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +++ L K G+ +   + +  MK  G    L T+ ++ D  C AG+ DEA+     M    
Sbjct: 415 ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK 474

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
              DV +   +++A+CR          F   VK+ V PD   +  LL+G  + G  + A 
Sbjct: 475 CTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLAL 534

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF-FSNAL 296
               E+++     P+ V+ ++  +  L +  + ++A + +  M     FP   F + N +
Sbjct: 535 ----ELLKTSLCKPDFVM-HKMVVDGLCKAGKAEDACEVVERMADAG-FPADAFTYINVV 588

Query: 297 DILVKLNDSTHAVQLWD 313
             L KL     A QL D
Sbjct: 589 RGLRKLGKVDKARQLVD 605


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 165/349 (47%), Gaps = 9/349 (2%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           PD V +VL L  D+  +A+ FF+WA +  G   +  A+  M+D+LG+   F ++ + ++ 
Sbjct: 183 PDAVVKVLNLQTDA-QNALRFFQWADKQEGYDHNTDAYFTMIDILGRAKMFTELQSLLQK 241

Query: 139 MKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV--AVNSLLSAICRQ 195
           M+  G  ++     S   SY  +G++ E++ +F++M   G E  ++  A NS+L ++ + 
Sbjct: 242 MQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKN 301

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           +        F   +   V  +  ++  +++ +  +  +E+A K   +M++   + P+ V+
Sbjct: 302 KKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQN-NYAPD-VV 359

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y   +  L + K +++A   L+ M+   C P +  ++  +  L  +     A++L  +M
Sbjct: 360 TYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLM 419

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
               G  P+  TY ++   L K +R+   ++ F+E +    +P  +   T +        
Sbjct: 420 EQ-GGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSR 478

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
              A++I   + +N   P   +   L+ GL    +L D  R  +EM N+
Sbjct: 479 LIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENK 527



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 138/319 (43%), Gaps = 12/319 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + +++  L K    EQ +  ++ M+E+G   ++ T+ ++    C   + +EA+    +M
Sbjct: 360 TYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLM 419

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
              GV  ++     L   +C+   +  RA E  N  + + + P+  ++  LL G+ +   
Sbjct: 420 EQGGVPPNIYTYTILTHGLCKLR-RLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSR 478

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--KGENC-FPTL 289
           + EA     EM +  +  P+HV  Y T +  L++G Q+ +AL+    M  KG +  F TL
Sbjct: 479 LIEAMDILKEMHQN-DCTPDHV-TYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTL 536

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
              +  L  +    D++    ++   M   G    +  Y +   CL     + E +   +
Sbjct: 537 NILARGLARVGNHKDAS----IFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLY 592

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EMI   + P      T I         + A  + N+++ENGI P   S N L+    N G
Sbjct: 593 EMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQG 652

Query: 410 RLSDVRRFAEEMLNRRILI 428
           R  D  +     L R +++
Sbjct: 653 RTQDADQLYATALERGVVL 671



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 3/220 (1%)

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHV-LAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           + + G  +E+ + F  M E   + P  +  AY + L++L++ K++D A      M     
Sbjct: 261 YGRSGRFKESLEAFNLMKE-MGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGV 319

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
                 +++ +           A++L D M+  + A PD +TY ++   L K K + +  
Sbjct: 320 SCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYA-PDVVTYTIVISALCKRKMIEQAY 378

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
               +M +N  +P        I  L     PE A+E+   + + G+ P   +   L  GL
Sbjct: 379 GVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGL 438

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             L RL   +    E L R +    VT + L   +   SR
Sbjct: 439 CKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSR 478


>gi|449455613|ref|XP_004145547.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g43820-like [Cucumis sativus]
          Length = 572

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 158/357 (44%), Gaps = 8/357 (2%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGK 125
           IE ALA T +I + D+V +VL        + V FF WA +   +   A  +N+++  LG+
Sbjct: 131 IEHALANTDVILSQDVVSKVLNTGSLGSEAMVTFFYWAIKQPSIPKDASSYNIILKALGR 190

Query: 126 NGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
            G F+ M + +  M  +GV  +L   + + DS     +  +A+  F  +   G++ D   
Sbjct: 191 RGFFDSMMDVLYNMTREGVEATLEMVSIVVDSLVKGHQVSKALQFFRNLKEIGLKCDTET 250

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           +N LL  +CR+ +    A  F N  K  +  +  ++ I++ GW + G   E  +    M 
Sbjct: 251 LNILLQCMCRR-SHVGAANSFFNLTKGNIPFNVMTYNIVIGGWSRYGRHGEVEQMLKAM- 308

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           E   ++P+  L +   +  L R  Q+D+A+K    M    C P +  ++  +   + + D
Sbjct: 309 ELDGFSPD-CLTHTYLIECLGRANQIDDAVKIFDKMDENGCTPDVDAYNAMISNFICIGD 367

Query: 305 STHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
               +  ++ M+  +   PD  TY+ +    +K K+V +  + F EM+     PT     
Sbjct: 368 FDQCLTYYERMLS-NRCEPDMNTYSNLITGFLKAKKVADALEMFDEMVA-RIIPTTGAIT 425

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           + I +      P  A+ I+    + G    + +   LL+ L   G+   +     EM
Sbjct: 426 SFIQLSCSYGPPHAAMLIYKKARKVGCRISKNAYKLLLMRLSLFGKFGMLLNIWNEM 482



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 117/291 (40%), Gaps = 9/291 (3%)

Query: 96  SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
            +A  FF         +   +N+++    + GR  ++   ++ M+ DG      T   + 
Sbjct: 265 GAANSFFNLTKGNIPFNVMTYNIVIGGWSRYGRHGEVEQMLKAMELDGFSPDCLTHTYLI 324

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA-ICRQENQTSRALEFLNR-VKKI 212
           +    A + D+AV  FD M  +G   DV A N+++S  IC  +    + L +  R +   
Sbjct: 325 ECLGRANQIDDAVKIFDKMDENGCTPDVDAYNAMISNFICIGD--FDQCLTYYERMLSNR 382

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
            +PD ++++ L+ G+ K   V +A + F EMV R         A  +F+           
Sbjct: 383 CEPDMNTYSNLITGFLKAKKVADALEMFDEMVARI---IPTTGAITSFIQLSCSYGPPHA 439

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A+   +  +   C  +   +   L  L         + +W+ M    G  PD  TY    
Sbjct: 440 AMLIYKKARKVGCRISKNAYKLLLMRLSLFGKFGMLLNIWNEMQE-SGYDPDVETYEHAI 498

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           +CL K  ++        E ++  + P+    +     LL  +  E+A ++W
Sbjct: 499 DCLCKTGQLENAVLVMEECLRQGFFPSRRTRSKLNNKLLACNRTEMAYKLW 549



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 94/216 (43%), Gaps = 10/216 (4%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVD 271
           +  D  S+ I+L+   + G  +        M  E  E   E V      + +L++G QV 
Sbjct: 174 IPKDASSYNIILKALGRRGFFDSMMDVLYNMTREGVEATLEMV---SIVVDSLVKGHQVS 230

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVK-LNDSTHAVQLWDIMMVFHGAFP-DSLTYN 329
           +AL+F R +K       LK  +  L+IL++ +   +H         +  G  P + +TYN
Sbjct: 231 KALQFFRNLKEIG----LKCDTETLNILLQCMCRRSHVGAANSFFNLTKGNIPFNVMTYN 286

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
           ++     +  R  EVE+    M  + + P  L     I  L  A++ + A++I++ + EN
Sbjct: 287 IVIGGWSRYGRHGEVEQMLKAMELDGFSPDCLTHTYLIECLGRANQIDDAVKIFDKMDEN 346

Query: 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
           G  P   + N ++     +G       + E ML+ R
Sbjct: 347 GCTPDVDAYNAMISNFICIGDFDQCLTYYERMLSNR 382


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 157/357 (43%), Gaps = 35/357 (9%)

Query: 89  QLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSL 147
           QL+Y+       F +   RG     + +++++  L K G  ++    +  ++E GV L++
Sbjct: 55  QLAYEK------FQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNV 108

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFL 206
            T++ + D  C A + D+A+  F  MS  G    DVV  NSLL  +C  E  +   + F 
Sbjct: 109 ITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFE 168

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
              K   +P+  S++ LL+G  K G ++EA + + EMVE+    P+ ++AY +F+  L +
Sbjct: 169 YMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEK-SCVPD-LVAYTSFVTGLCK 226

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM----------- 315
             +V EA    R M  +        FS  + IL K     HA +  + M           
Sbjct: 227 ANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCK---KGHAEEAQNQMIEHLCRSGMLD 283

Query: 316 --------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
                   M+     P +  +N +   + K+KR+ +    F  M   +    P N  T  
Sbjct: 284 EACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYN 343

Query: 368 TM---LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            M   L  A + + A E+ N +   G+ P   + + L+ GL  LG+L       EEM
Sbjct: 344 IMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEM 400



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 151/354 (42%), Gaps = 29/354 (8%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +G +    A++ ++ +L K G  E+  N                  + +  C +G  DEA
Sbjct: 243 KGSKADAVAFSTVIGILCKKGHAEEAQN-----------------QMIEHLCRSGMLDEA 285

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAI 222
             +F+ M            N+L+ A+C+ +      L F  R+K + +    P+ +++ I
Sbjct: 286 CKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLF-QRMKSMKEFYCPPNLETYNI 344

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +++   K   ++EA +   EM   +  +P+ V+ Y   +  L +  ++D A   L  M  
Sbjct: 345 MVDNLCKAKQLDEAQELVNEMAN-YGLSPD-VVTYSALVDGLCKLGKLDRACDLLEEMSK 402

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           E  FP     ++ L+ L K     +A+   + M    G+ PD +TYN + + L K  R+ 
Sbjct: 403 EGVFPDSFTDASILNALSKAGKVDYALSHLETMKA-RGSTPDLVTYNTLLDGLCKAGRID 461

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E   F  +M+  +  P   +    IT L  + +   A  I+  +++ G+LP     + LL
Sbjct: 462 EAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLL 521

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
            GL   G    +   A E+L   +   +  MHK+      ++    D  + +ER
Sbjct: 522 DGLARNG----LEDLALELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVER 571



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 136/293 (46%), Gaps = 12/293 (4%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L T+  + D+ C A + DEA    + M+ +G+  DVV  ++L+  +C+   +  RA + 
Sbjct: 338 NLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKL-GKLDRACDL 396

Query: 206 LNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L  + K+ V PD  + A +L    K G V+ A      M  R   +   ++ Y T L  L
Sbjct: 397 LEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKAR--GSTPDLVTYNTLLDGL 454

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            +  ++DEA+ FL  M    C P +  ++  +  L +   +  A  ++   MV  G  PD
Sbjct: 455 CKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQ-EMVKRGVLPD 513

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIW 383
           ++ Y+ + + L +N     +E    E++K    +P  +     +  L  A + E A E+ 
Sbjct: 514 TVLYHSLLDGLARNG----LEDLALELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVV 569

Query: 384 NYILENGILPLEA-SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 435
             + + G  P +A +   ++ GLR LG++   R+  ++       +  ++M K
Sbjct: 570 ERMADAG-FPADAFTYISVVSGLRKLGKVDKARQLVDDASETHTSVERLSMEK 621



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 100/265 (37%), Gaps = 38/265 (14%)

Query: 161 GKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           GK    V  FD +    G +  V   N  L A+ +         +F    ++   PD  +
Sbjct: 16  GKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFT 75

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           ++I+L G  K G +++A +  G++  R      +V+ Y   +    +  +VD+AL+  + 
Sbjct: 76  YSIVLRGLCKAGELDKAKELLGQL--RESGVKLNVITYSVVIDGCCKASRVDDALEIFKT 133

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M                                       G  PD +T+N + + L   +
Sbjct: 134 MSSGG-----------------------------------GCVPDVVTFNSLLKGLCSGE 158

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           R+ E    F  M K   +P  ++ +T +  L  A   + A  +W  ++E   +P   +  
Sbjct: 159 RMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYT 218

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNR 424
             + GL    R+++      +M+ +
Sbjct: 219 SFVTGLCKANRVAEACDCCRKMVTK 243



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 8/197 (4%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +++ L K G+ +   + +  MK  G    L T+ ++ D  C AG+ DEA+     M    
Sbjct: 415 ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK 474

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
              DV +   +++A+CR          F   VK+ V PD   +  LL+G  + G  + A 
Sbjct: 475 CTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLAL 534

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF-FSNAL 296
               E+++     P+ V+ ++  L  L +  + ++A + +  M     FP   F + + +
Sbjct: 535 ----ELLKTSLCKPDFVM-HKMVLDGLCKAGKAEDACEVVERMADAG-FPADAFTYISVV 588

Query: 297 DILVKLNDSTHAVQLWD 313
             L KL     A QL D
Sbjct: 589 SGLRKLGKVDKARQLVD 605


>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 495

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 151/362 (41%), Gaps = 14/362 (3%)

Query: 40  FPTHLDAPYISSSAR-----IICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDS 94
           FP   +A  I+ S        I +++  +    +  AL    I  TPDLV++V++  ++ 
Sbjct: 23  FPLPRNAVTIADSVEHPSDATIAKLVLESDPRTVSEALTKPTIQWTPDLVNKVMKRLWNH 82

Query: 95  PSSAVDFFRWAGRGQ---RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TF 150
              A+ FF+   R       SP +++  VD+  +   F   W  V  M+   +   P T 
Sbjct: 83  GPKALQFFKHLDRHHPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTL 142

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
           A + + Y   GK   AV +F  M+ HG+ QD+ + N+LL  +C+ + +   A   L  + 
Sbjct: 143 AILAERYASNGKPHRAVRTFLSMAEHGIRQDLHSFNTLLDILCKSK-RVETAHSLLKTLT 201

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
               PD  ++ IL  G+        A +   EMV+R    P  V  Y T L    R  Q+
Sbjct: 202 SRFRPDTVTYNILANGYCLIKRTPMALRVLKEMVQR-GIEPTMV-TYNTMLKGYFRSNQI 259

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
            EA +F   MK   C   +  ++  +       D   A +++   MV  G  P+  TYN 
Sbjct: 260 KEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFH-EMVKEGVVPNVATYNA 318

Query: 331 IFECLIKNKRVHEVEKFFHEMIK-NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
           + + L K   V      F EM +     P  +     I  L    + E A+     + E+
Sbjct: 319 LIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEH 378

Query: 390 GI 391
           G+
Sbjct: 379 GL 380



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 168/408 (41%), Gaps = 27/408 (6%)

Query: 33  HRPTRPRFPTHLD---APYISSSARIICEILAHASSDDIESALACTG------IIPTPDL 83
           H P   +F  HLD     Y  S +     +   A   D  SA A  G      + P+P  
Sbjct: 82  HGPKALQFFKHLDRHHPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKT 141

Query: 84  VHEVLQLSYDS---PSSAV-DFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           +  +L   Y S   P  AV  F   A  G R   +++N ++D+L K+ R E   + ++ +
Sbjct: 142 L-AILAERYASNGKPHRAVRTFLSMAEHGIRQDLHSFNTLLDILCKSKRVETAHSLLKTL 200

Query: 140 KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT 199
                    T+  + + YC   +   A+     M   G+E  +V  N++L    R  NQ 
Sbjct: 201 TSRFRPDTVTYNILANGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRS-NQI 259

Query: 200 SRALEF-LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
             A EF L   K+  + D  ++  ++ G+   G+V++A + F EMV+  E    +V  Y 
Sbjct: 260 KEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVK--EGVVPNVATYN 317

Query: 259 TFLITLIRGKQVDEALKFLRVMKGEN-CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
             +  L +   V+ A+     M  E  C P +  ++  +  L  + D   A+   +  M 
Sbjct: 318 ALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFME-RMG 376

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
            HG      TYN++         V +  + F +M      P        I+ +    + E
Sbjct: 377 EHGLRACVQTYNVVIRYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSE 436

Query: 378 ---IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
              +A ++   +++ G LP + + N +L GL   G     + FA+E+L
Sbjct: 437 DLVVAGKLLMDMVDRGFLPRKFTFNRVLNGLVITGN----QDFAKEIL 480


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 157/366 (42%), Gaps = 16/366 (4%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           +  L+ E  +L +  PS          +G     Y +N +++ L K+G++E+       M
Sbjct: 272 SQGLMEEAFELMHAMPS----------KGFSPGVYTYNTVINGLCKHGKYERAKEVFAEM 321

Query: 140 KEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
              G+     T+ S+    C  G   E    F  M    V  D+V  +S++S   R  N 
Sbjct: 322 LRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGN- 380

Query: 199 TSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             +AL + N VK+  + PD   + IL++G+ ++G + EA     EM++  +     V+ Y
Sbjct: 381 LDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQ--QGCAMDVVTY 438

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
            T L  L + K + EA K    M     FP     +  +D   KL +  +A++L+  M  
Sbjct: 439 NTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKE 498

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
                 D +TYN + +   K   +   ++ + +M+  E  PTP++ +  +  L       
Sbjct: 499 KRIKL-DVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLS 557

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437
            A  +W+ ++   I P     N ++ G    G  SD   F E+M++   +   ++ + L 
Sbjct: 558 EAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLI 617

Query: 438 KAFYNE 443
             F  E
Sbjct: 618 YGFVKE 623



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 149/326 (45%), Gaps = 14/326 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  ++ Y  N+MV+ L K+G+ E++   +  ++E GV   + T+ ++  +Y   G  +EA
Sbjct: 220 GVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEA 279

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLE 225
                 M   G    V   N++++ +C+   +  RA E F   ++  + PD  ++  LL 
Sbjct: 280 FELMHAMPSKGFSPGVYTYNTVINGLCKH-GKYERAKEVFAEMLRSGLSPDSTTYRSLLM 338

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K+G+  E    F +M  R +  P+ ++ + + +    R   +D+AL +   +K    
Sbjct: 339 EACKKGDAVETENIFSDMRSR-DVVPD-LVCFSSMMSLFTRSGNLDKALMYFNSVKEAGL 396

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    ++  +    +    + A+ L + M+   G   D +TYN I   L K K + E +
Sbjct: 397 IPDNVIYTILIQGYCRKGMISEAMNLRNEMLQ-QGCAMDVVTYNTILHGLCKRKMLGEAD 455

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDA----DEPEIAIEIWNYILENGILPLEASANEL 401
           K F+EM +    P     +  +T+L+D        + A+E++  + E  I     + N L
Sbjct: 456 KLFNEMTERGLFPD----SYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTL 511

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRIL 427
           L G   +G +   +    +M+++ IL
Sbjct: 512 LDGFGKVGDIDTAKEIWADMVSKEIL 537



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/344 (20%), Positives = 138/344 (40%), Gaps = 41/344 (11%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFDVMSMHG 177
           M+ +  ++G  ++       +KE G++      +I    YC  G   EA+   + M   G
Sbjct: 371 MMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQG 430

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
              DVV  N++L  +C+++        F    ++ + PD  +  IL++G  K GN++ A 
Sbjct: 431 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAM 490

Query: 238 KTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
           + F +M E R + +   V+ Y T L    +   +D A +    M  +   PT   FS  +
Sbjct: 491 ELFKKMKEKRIKLD---VVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILV 547

Query: 297 DILVKLNDSTHAVQLWDIM----------------------------------MVFHGAF 322
           + L      + A ++WD M                                  M+  G  
Sbjct: 548 NALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFV 607

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP--LNCATAITMLLDADEPEIAI 380
           PD ++YN +    +K + + +      +M + +    P      + +      ++ + A 
Sbjct: 608 PDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAE 667

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   ++E G+ P  ++   L+ G  +   L++  RF +EML R
Sbjct: 668 AVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQR 711



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 8/219 (3%)

Query: 110 RLSPYAWNLMVDVLGKNGRFE---QMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDE 165
           +L    +N ++D  GK G  +   ++W A  V KE  +L  P +F+ + ++ C  G   E
Sbjct: 502 KLDVVTYNTLLDGFGKVGDIDTAKEIW-ADMVSKE--ILPTPISFSILVNALCSKGHLSE 558

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   +D M    ++  V+  NS++   CR  N +   +     + +   PD  S+  L+ 
Sbjct: 559 AFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIY 618

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ KE N+ +A     +M E+       V  Y + L    R  Q+ EA   LR M     
Sbjct: 619 GFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGV 678

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            P    +++ ++  V  ++ T A +  D M+   G  PD
Sbjct: 679 NPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQ-RGFSPD 716



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 96/246 (39%), Gaps = 3/246 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T   + D +C  G    A+  F  M    ++ DVV  N+LL    +  +  +    + + 
Sbjct: 472 TLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADM 531

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V K + P   SF+IL+     +G++ EA + + EM+ +    P  V+   + +    R  
Sbjct: 532 VSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISK-SIKPT-VMICNSMIKGYCRSG 589

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-PDSLT 327
              +   FL  M  E   P    ++  +   VK  + + A  L   M    G   PD  T
Sbjct: 590 NASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFT 649

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN I     +  ++ E E    +MI+    P      + I   +  D    A    + +L
Sbjct: 650 YNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEML 709

Query: 388 ENGILP 393
           + G  P
Sbjct: 710 QRGFSP 715


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 143/343 (41%), Gaps = 3/343 (0%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   +G   S  A+N ++  LGK G+ ++       MK D + +LPT+  I    C AG 
Sbjct: 226 RQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMPNLPTYNIIIGMLCKAGN 285

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A    D M   G+  +V  +N ++  +C+ +        F     K+  PDG +F  
Sbjct: 286 VEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCS 345

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  K+G V++A + +  M++  +    +V+ Y + +    +  + ++  K  + M  
Sbjct: 346 LIDGLGKQGRVDDAYRIYERMLDADQI--PNVVVYTSLIRNFFKCDRKEDGHKMYKEMMR 403

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
             C P L   +  +D + K  ++     L++ +    G  PD+ +Y+++   L+K     
Sbjct: 404 SGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKA-RGFLPDTRSYSILIHSLVKAGFAR 462

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E  + ++ M             T I     + +   A ++   +   G  P   +   ++
Sbjct: 463 ETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVV 522

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            GL  + RL +     EE  +  I + +V    L   F    R
Sbjct: 523 DGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGR 565



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 118/269 (43%), Gaps = 5/269 (1%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+H +++  +   +  + ++    +G  L   A+N ++D   K+G+  + +  +  MK  
Sbjct: 451 LIHSLVKAGFARETYEL-YYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTM 509

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           G   ++ T+ S+ D      + DEA M F+    +G+E + V  +SL+    +       
Sbjct: 510 GHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEA 569

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
            L     ++K + P+  ++  LL+G  K   + EA   F  M +  +  P  +  Y   +
Sbjct: 570 YLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKD-LKCTPNQI-TYCILI 627

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             L + ++ ++A  F + M+ +   P    ++  +  L K  +   A  L++      G 
Sbjct: 628 NGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRA-SGG 686

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            PDS +YN + E L    R  +  + F E
Sbjct: 687 IPDSASYNAMIEGLSIANRALDAYQLFEE 715



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 136/338 (40%), Gaps = 17/338 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG----VLSLPTFASIFDSYCGAGKYDEAVMSF 170
           A+  ++  L + G  ++M      M+E G    V  L T   +F      G+ D A+   
Sbjct: 63  AYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSR---EGRVDAALSLL 119

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEK 229
           D M  +  + D+V  N  +     +  +   A +F + +K   + PD  ++  ++    K
Sbjct: 120 DEMKSNTFDADIVLYNVCIDCF-GKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCK 178

Query: 230 EGNVEEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
              ++EA + F    E+ E N +     AY T ++      + DEA   L   + + C P
Sbjct: 179 ANRLDEAVEIF----EQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIP 234

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
           ++  ++  L  L K   +  A+++++ M     A P+  TYN+I   L K   V    K 
Sbjct: 235 SVVAYNCILTCLGKKGKTDKALRIFEEMK--RDAMPNLPTYNIIIGMLCKAGNVEAAFKV 292

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
              M +    P        I  L  A + + A  I+  +      P  A+   L+ GL  
Sbjct: 293 RDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGK 352

Query: 408 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            GR+ D  R  E ML+   +   V    L + F+   R
Sbjct: 353 QGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDR 390



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/337 (18%), Positives = 132/337 (39%), Gaps = 39/337 (11%)

Query: 119 MVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D LGK GR +  +    R++  D + ++  + S+  ++    + ++    +  M   G
Sbjct: 346 LIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSG 405

Query: 178 VEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
              D++ +N+ +  + +  E +  RAL F     +   PD  S++IL+    K G   E 
Sbjct: 406 CSPDLMLLNTYMDCVFKAGETEKGRAL-FEEIKARGFLPDTRSYSILIHSLVKAGFARET 464

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            + +  M +  +       AY T +    +  +V++A + L  MK     PT+  + + +
Sbjct: 465 YELYYAMKD--QGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVV 522

Query: 297 DILVKLNDSTHAVQLWD--------------------------------IM--MVFHGAF 322
           D L K++    A  L++                                +M  M+  G  
Sbjct: 523 DGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLT 582

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           P+  T+N + + L+K + ++E    F  M   +  P  +     I  L    +   A   
Sbjct: 583 PNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVF 642

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
           W  + + G+ P   +   ++ GL   G ++      E
Sbjct: 643 WQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFE 679



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 4/179 (2%)

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           +M+  F++ P    AY T +  L    + D  L     M+       +   +  + +  +
Sbjct: 50  QMMRHFKFRPAFS-AYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSR 108

Query: 302 LNDSTHAVQLWDIMMVFHGAF-PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
                 A+ L D M      F  D + YN+  +C  K  +V    KFFHEM  N   P  
Sbjct: 109 EGRVDAALSLLDEMK--SNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDD 166

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
           +   + + +L  A+  + A+EI+  + +N  +P   + N +++G  + G+  +     E
Sbjct: 167 VTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLE 225


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 161/364 (44%), Gaps = 8/364 (2%)

Query: 95  PSSAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFAS 152
           P  A D +R        ++ Y  N+MV    K   F+++   +  M++  V   + T   
Sbjct: 76  PHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNV 135

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + D+   AG  + A+   D M   G++  +V  NS+L  +CR      +A E    +   
Sbjct: 136 MVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRS-GMWDKAWEVFKEMDDF 194

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            V PD  SF IL+ G+ + G +EEA K + EM  R    P+ ++++   +    R  ++D
Sbjct: 195 GVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHR-GIKPD-LVSFSCLIGLFARRGKMD 252

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
            A+ +LR M+     P    ++  +    +    + A+++ D  MV  G  PD +TYN +
Sbjct: 253 HAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRD-EMVGCGCLPDVVTYNTL 311

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
              L K +R+ + E   +EM +    P      T I       + + A+++++ +L   +
Sbjct: 312 LNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRL 371

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIF 451
            P   + N L+ G+   G L       ++M +R I    VT   L  + + E   + D F
Sbjct: 372 RPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS-HCEKGQVEDAF 430

Query: 452 DSLE 455
             L+
Sbjct: 431 GFLD 434



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 146/326 (44%), Gaps = 14/326 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK-----EDGVLSLPTFASIFDSYCGAG 161
           RG +    +++ ++ +  + G+ +     +R M+      DGV+    +  +   +C AG
Sbjct: 229 RGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVI----YTMVIGGFCRAG 284

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSF 220
              +A+   D M   G   DVV  N+LL+ +C+ E +   A   LN ++ + V PD  +F
Sbjct: 285 LMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK-ERRLLDAEGLLNEMRERGVPPDLCTF 343

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ G+  EG +++A + F  M+ +    P+ ++ Y T +  + R   +D+A      M
Sbjct: 344 TTLIHGYCIEGKLDKALQLFDTMLNQ-RLRPD-IVTYNTLIDGMCRQGDLDKANDLWDDM 401

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                FP    +S  +D   +      A    D  M+  G  P+ +TYN I +   ++  
Sbjct: 402 HSREIFPNHVTYSILIDSHCEKGQVEDAFGFLD-EMINKGILPNIMTYNSIIKGYCRSGN 460

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           V + +KF  +M+ N+  P  +   T I   +  D+   A ++ N + +  + P   + N 
Sbjct: 461 VSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNM 520

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRI 426
           L+ G    G + +     E+M  + I
Sbjct: 521 LINGFSVHGNVQEAGWIFEKMCAKGI 546



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 161/350 (46%), Gaps = 7/350 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +     +N ++  L ++G +++ W   + M + GV   + +F  +   +C  G+ +E
Sbjct: 159 KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEE 218

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A+  +  M   G++ D+V+ + L+    R+  +   A+ +L  ++   + PDG  + +++
Sbjct: 219 ALKIYKEMRHRGIKPDLVSFSCLIGLFARR-GKMDHAMAYLREMRCFGLVPDGVIYTMVI 277

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ + G + +A +   EMV      P+ V+ Y T L  L + +++ +A   L  M+   
Sbjct: 278 GGFCRAGLMSDALRVRDEMVG-CGCLPD-VVTYNTLLNGLCKERRLLDAEGLLNEMRERG 335

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P L  F+  +           A+QL+D M+      PD +TYN + + + +   + + 
Sbjct: 336 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLN-QRLRPDIVTYNTLIDGMCRQGDLDKA 394

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
              + +M   E  P  +  +  I    +  + E A    + ++  GILP   + N ++ G
Sbjct: 395 NDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKG 454

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
               G +S  ++F ++M+  ++    +T + L   +  E + M D F  L
Sbjct: 455 YCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDK-MHDAFKLL 503



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 153/362 (42%), Gaps = 15/362 (4%)

Query: 57  CEILAHASSDDIESALA------CTGIIPTPDLVHEVLQLSYDSPSSAVDFFR----WAG 106
           C I   A    ++ A+A      C G++P   +++ ++   +       D  R      G
Sbjct: 240 CLIGLFARRGKMDHAMAYLREMRCFGLVPD-GVIYTMVIGGFCRAGLMSDALRVRDEMVG 298

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
            G       +N +++ L K  R       +  M+E GV   L TF ++   YC  GK D+
Sbjct: 299 CGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDK 358

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  FD M    +  D+V  N+L+  +CRQ +       + +   + + P+  +++IL++
Sbjct: 359 ALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILID 418

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              ++G VE+A     EM+ +      +++ Y + +    R   V +  KFL+ M     
Sbjct: 419 SHCEKGQVEDAFGFLDEMINKGIL--PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 476

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P L  ++  +   +K +    A +L + MM      PD +TYNM+      +  V E  
Sbjct: 477 SPDLITYNTLIHGYIKEDKMHDAFKLLN-MMEKEKVQPDVVTYNMLINGFSVHGNVQEAG 535

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             F +M     +P      + I   + A   + A ++ + +L+ G     A+     V +
Sbjct: 536 WIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGKEKRRAAGTVQFVNI 595

Query: 406 RN 407
           +N
Sbjct: 596 QN 597


>gi|9857539|gb|AAG00894.1|AC064879_12 Hypothetical protein [Arabidopsis thaliana]
          Length = 490

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 160/369 (43%), Gaps = 54/369 (14%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVD 121
           +++ +L+ +GI  + DL+  VL+    S+ +P   ++F+R+A   RG   S ++ + M+ 
Sbjct: 56  ELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLDTMLY 115

Query: 122 VLGKNGRFEQMWN-AVRVMKEDGVLSLPTFASI----FDSYCGAGKYDEAVMSFDVMSMH 176
           +LG+N +F+Q+W   +   ++D  L  P    +        C   +  E+   F  +   
Sbjct: 116 ILGRNRKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPD 175

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE-------- 228
               D    N+LL  +C QE   + A    + +K    PD  +F ILL GW+        
Sbjct: 176 FF--DTACFNALLRTLC-QEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAF 232

Query: 229 ------------------------KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
                                   K+  +E+A K   +M E  E  P+ V+ Y T +  L
Sbjct: 233 FEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREE-EETPD-VITYTTVIGGL 290

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALD---ILVKLNDSTHAVQLWDIMMVFHGA 321
               Q D+A + L+ MK   C+P +  ++ A+    I  +L D+   V      MV  G 
Sbjct: 291 GLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVD----EMVKKGL 346

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            P++ TYN+ F  L     +    + +  M+ NE  P   +C   I M    ++ ++A+ 
Sbjct: 347 SPNATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMR 406

Query: 382 IWNYILENG 390
           +W  ++  G
Sbjct: 407 LWEDMVVKG 415


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 149/352 (42%), Gaps = 5/352 (1%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G+G       +N +++   + G  E+ +  +      G+   L T+ +I    C  GKYD
Sbjct: 285 GKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYD 344

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            A      M   G+  +    N+LL  ICR++N       F    ++ V PD  SF+ L+
Sbjct: 345 RAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLI 404

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
               + G++ +A   F EM ER    P++V+ Y   +    R   + +ALK    M    
Sbjct: 405 GVLARNGHLYQALMHFREM-ERSGIVPDNVI-YTILIDGFCRNGALSDALKMRDEMLARG 462

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           CF  +  ++  L+ L K      A  L++  MV  G  PD  T+  +     K+  + + 
Sbjct: 463 CFMDVVTYNTFLNGLCKKKMFADADMLFN-EMVERGMVPDFYTFTTLIRGYCKDGNMDKA 521

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
              F  M++   +P  +   T I     A E   A E+W+ ++   I+P   S   +L G
Sbjct: 522 LNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNG 581

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
             + G L +     ++ML + I    VT + L K  Y  S  M   ++ L +
Sbjct: 582 FCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKG-YCRSGDMPKAYEYLSK 632



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 149/342 (43%), Gaps = 4/342 (1%)

Query: 104 WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           ++ RG       +N ++  L K G++++  + +  M + G+  +  T+ ++    C    
Sbjct: 318 FSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDN 377

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
             EA   FD MS  GV  D+V+ +SL+  + R  +     + F    +  + PD   + I
Sbjct: 378 ILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTI 437

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G+ + G + +A K   EM+ R  +    V+ Y TFL  L + K   +A      M  
Sbjct: 438 LIDGFCRNGALSDALKMRDEMLARGCF--MDVVTYNTFLNGLCKKKMFADADMLFNEMVE 495

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
               P    F+  +    K  +   A+ L++  MV     PD +TYN + +   K   + 
Sbjct: 496 RGMVPDFYTFTTLIRGYCKDGNMDKALNLFE-AMVRTNLKPDKVTYNTLIDGFCKAGEMG 554

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
             ++ + +MI+ +  P  ++  T +     +     A+ + + +LE GI P   + N L+
Sbjct: 555 RAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLI 614

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            G    G +     +  +M++  I+    + + L   +  E+
Sbjct: 615 KGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEA 656



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/394 (21%), Positives = 154/394 (39%), Gaps = 42/394 (10%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFF-RWAGRGQRLS 112
           +C+I  +  + D+   +   G+ P     + +L      D+   A + F   + RG    
Sbjct: 337 LCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPD 396

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFD 171
             +++ ++ VL +NG   Q     R M+  G++      +I  D +C  G   +A+   D
Sbjct: 397 LVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRD 456

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M   G   DVV  N+ L+ +C+++      + F   V++ + PD  +F  L+ G+ K+G
Sbjct: 457 EMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDG 516

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+++A   F  MV R    P+ V  Y T                                
Sbjct: 517 NMDKALNLFEAMV-RTNLKPDKV-TYNTL------------------------------- 543

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
               +D   K  +   A +LWD  M+     PD ++Y  +      +  + E      +M
Sbjct: 544 ----IDGFCKAGEMGRAKELWDD-MIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQM 598

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           ++   +P  + C T I     + +   A E  + ++ NGI+P   S N L+ G      L
Sbjct: 599 LEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANL 658

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
                   EM  R +    +T + +   F  E +
Sbjct: 659 EKAFILINEMEKRGLQFNIITYNLILNGFCAEGK 692



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 81/402 (20%), Positives = 157/402 (39%), Gaps = 47/402 (11%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSY------DSPSSAVDFFRWAGRGQRLSPYAWNLMVD 121
           +ES ++      +  L++++L  +Y         S A    R   +G  +S  A N ++ 
Sbjct: 173 VESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRR--KGVSVSINACNKLLG 230

Query: 122 VLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
            L + G  +  W     +   G+ L++ T   + ++ C   K++  +     M   GV  
Sbjct: 231 GLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFA 290

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
           D+V  N+L++A CR E     A + LN    + ++P   ++  +L G  K G  + A   
Sbjct: 291 DIVTYNTLINAYCR-EGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDV 349

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
             EM++     P +   Y T L+ + R   + EA +    M      P L  FS+ + +L
Sbjct: 350 LIEMLQ-LGLTP-NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVL 407

Query: 300 VKLNDSTHAVQ---------------LWDIM-------------------MVFHGAFPDS 325
            +      A+                ++ I+                   M+  G F D 
Sbjct: 408 ARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDV 467

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TYN     L K K   + +  F+EM++    P      T I         + A+ ++  
Sbjct: 468 VTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEA 527

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           ++   + P + + N L+ G    G +   +   ++M+ + I+
Sbjct: 528 MVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDII 569



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 139/325 (42%), Gaps = 11/325 (3%)

Query: 75  TGIIPTPDLVHEVLQLSYDSPSSAVDFFRW----AGRGQRLSPYAWNLMVDVLGKNGRFE 130
           +GI+P  ++++ +L   +    +  D  +       RG  +    +N  ++ L K   F 
Sbjct: 426 SGIVP-DNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFA 484

Query: 131 QMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
                   M E G++    TF ++   YC  G  D+A+  F+ M    ++ D V  N+L+
Sbjct: 485 DADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLI 544

Query: 190 SAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
              C+   +  RA E  +  ++K + PD  S+  +L G+   G + EA     +M+E+  
Sbjct: 545 DGFCKA-GEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEK-G 602

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             P +++   T +    R   + +A ++L  M      P    ++  +D  +K  +   A
Sbjct: 603 IRP-NLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKA 661

Query: 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 368
             L + M    G   + +TYN+I        ++ E E+   +MI+    P     ++ I 
Sbjct: 662 FILINEMEK-RGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLIN 720

Query: 369 MLLDADEPEIAIEIWNYILENGILP 393
             +  D  + A    + +L+ G++P
Sbjct: 721 GHVSQDNMKEAFRFHDEMLQRGLVP 745


>gi|383176220|gb|AFG71632.1| hypothetical protein 2_10152_01, partial [Pinus taeda]
          Length = 144

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 74/124 (59%)

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           MV++G FPD  TYN IFE LI  ++V E    F EM KNE+ P   N   AI M L+AD+
Sbjct: 21  MVYNGIFPDFKTYNTIFEGLITARKVEEASIIFREMTKNEFCPLYDNYVMAIKMYLEADD 80

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 435
           PE+A+ +W ++++  I P    A  L+    +LGR+S+  +++ + + R + +   T  K
Sbjct: 81  PEMAVTMWKHMIQKAIFPKSDCAAILVDWFCDLGRVSEAVKYSMDAIARGVQLPVETTTK 140

Query: 436 LKKA 439
           LKKA
Sbjct: 141 LKKA 144


>gi|297733848|emb|CBI15095.3| unnamed protein product [Vitis vinifera]
          Length = 815

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 146/317 (46%), Gaps = 21/317 (6%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP+LV  VL+L ++    A+ FF+        +    +++  +D+ G+   ++ +W  V 
Sbjct: 66  TPNLVDRVLKLLWNHGPKALQFFKSLDYHPTYAHVSSSFDHAIDIAGRLRDYKTLWTLVD 125

Query: 138 VMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
            M+   +   P TFA I + Y  AGK D A+  F  M  HG  QD+ + N++L  +C+  
Sbjct: 126 RMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFFSMHEHGCVQDLNSFNTILDVLCKS- 184

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
                        K++   D   F +   G+ + G ++EA + F +M +R       V+ 
Sbjct: 185 -------------KRVEMADNKLFKVF-RGFFRAGQLKEAWEFFLQMKKR--KCEIDVVT 228

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           Y T +       +V +A +    M GE   P++  ++  + +L K ++  +A+ +++ M+
Sbjct: 229 YTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFEEML 288

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
              G  P+S TYN++   L    R+ +  +F   M  +E +P        I    DA+E 
Sbjct: 289 R-KGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEEI 347

Query: 377 EIAIEIWNYILENGILP 393
           E  + ++  + +   LP
Sbjct: 348 EKGLNVFEKMGDADCLP 364



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 27/174 (15%)

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD--IMMVFHGAFP----- 323
           D A+K    M    C   L  F+  LD+L K    +  V++ D  +  VF G F      
Sbjct: 153 DRAIKIFFSMHEHGCVQDLNSFNTILDVLCK----SKRVEMADNKLFKVFRGFFRAGQLK 208

Query: 324 ----------------DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
                           D +TY  +         V + ++ F+EMI     P+       I
Sbjct: 209 EAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFI 268

Query: 368 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            +L   D  E AI ++  +L  G +P   + N ++ GL ++GR+     F   M
Sbjct: 269 QVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARM 322



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 33/168 (19%), Positives = 75/168 (44%), Gaps = 3/168 (1%)

Query: 127 GRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G+ ++ W     MK+    + + T+ ++   +  AG+  +A   F+ M   GV   V   
Sbjct: 205 GQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATY 264

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           N+ +  +C+++N  +    F   ++K   P+  ++ +++ G    G +E+A +    M +
Sbjct: 265 NAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKD 324

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             E  P +V  Y   +      +++++ L     M   +C P L  ++
Sbjct: 325 D-ECEP-NVQIYNVVIRYFCDAEEIEKGLNVFEKMGDADCLPNLDTYN 370


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 151/333 (45%), Gaps = 16/333 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +++ L   GRF         M+  G L+   T+  I    C  G  ++A++ F+ M
Sbjct: 417 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 476

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGN 232
              G    VV  N+L++    + N  + A   L+ +K+   +PD  ++  L+ G+ K G 
Sbjct: 477 LKMGPLPTVVTYNTLINGYLTKGN-VNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGK 535

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +E A+  F EMVE    NP  V +Y T +    +  +VD AL  L  M+   C P ++ +
Sbjct: 536 LESASFYFQEMVE-CGLNPNPV-SYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESY 593

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  ++ L K N  + A ++ D  M   G  P+ +TY  + + L +N R     K FH+M 
Sbjct: 594 NAVINGLSKENRFSEAEKICD-KMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDME 652

Query: 353 KNEWQPTPLNCATAITMLLD---ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           K +  P     ++ I  L     ADE EI ++    +   G+ P E +   L+ G   LG
Sbjct: 653 KRKCLPNLYTYSSLIYGLCQEGKADEAEILLK---EMERKGLAPDEVTFTSLIDGFVVLG 709

Query: 410 RLSD----VRRFAEEMLNRRILIYEVTMHKLKK 438
           R+      +RR  +         Y V +  L+K
Sbjct: 710 RIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQK 742



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 139/321 (43%), Gaps = 10/321 (3%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G G   S Y+ N ++  L K    E   N  + M   G+  SL TF ++ +     GK 
Sbjct: 197 SGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV 256

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
            EA +    +  + +  DV    SL+   CR  N       F   VK+  DP+  +++ L
Sbjct: 257 REAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 316

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G   EG V+EA     EM+E+    P  V  Y   +  L   +  +EA++ +  MK  
Sbjct: 317 INGLCNEGRVDEALDMLEEMIEK-GIEPT-VYTYTLPITALCAIEHEEEAIELVARMKKR 374

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
            C P ++ ++  +  L +L     A+ L+  M+   G  P+++TYN +   L    R   
Sbjct: 375 GCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLK-EGLVPNTVTYNALINELCVGGRFST 433

Query: 344 VEKFFHEMIKNEWQPTPLNCAT---AITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
             K FH M   E   +  N  T    I  L    + E A+ ++  +L+ G LP   + N 
Sbjct: 434 ALKIFHWM---EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNT 490

Query: 401 LLVGLRNLGRLSDVRRFAEEM 421
           L+ G    G +++  R  + M
Sbjct: 491 LINGYLTKGNVNNAARLLDLM 511



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/356 (20%), Positives = 141/356 (39%), Gaps = 36/356 (10%)

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           R++KE    +  T++++ +  C  G+ DEA+   + M   G+E  V      ++A+C  E
Sbjct: 300 RMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIE 359

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER---------- 246
           ++           K+   P+  ++  L+ G  + G +E A   + +M++           
Sbjct: 360 HEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYN 419

Query: 247 ------------------FEWNPEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGE 283
                             F W   H        Y   +  L  G  +++A+     M   
Sbjct: 420 ALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKM 479

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              PT+  ++  ++  +   +  +A +L D+M   +G  PD  TYN +     K  ++  
Sbjct: 480 GPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKE-NGCEPDEWTYNELVSGFSKWGKLES 538

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
              +F EM++    P P++  T I       + +IA+ +   + E G  P   S N ++ 
Sbjct: 539 ASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVIN 598

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLERR 457
           GL    R S+  +  ++M  + +L   +T   L        R+     IF  +E+R
Sbjct: 599 GLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKR 654



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 5/196 (2%)

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K+  FE + N +  M E G   +L T++++    C  G++ EA      M   G   D  
Sbjct: 766 KDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDRE 825

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
              SLL A C+   +   AL+  + ++ K        +  L+    K G VEEA   F  
Sbjct: 826 IYYSLLIAHCKNL-EVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDN 884

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M+E+ EWN + ++ +   +  L++  ++D  +K L +M+ +N  P ++ +      L ++
Sbjct: 885 MLEK-EWNADEIV-WTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRI 942

Query: 303 NDSTHAVQLWDIMMVF 318
             S  +  L D + V 
Sbjct: 943 GKSIESEPLADKLKVL 958



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 12/254 (4%)

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI-----LLEGWEKEGNVEEANKTFGE 242
           L+   CR E +  R  +FLN +  +    G  F++     LL    K   VE A   + +
Sbjct: 175 LMIKACRNEEEIRRVADFLNEISGM----GFGFSLYSCNTLLIQLAKFEMVEGARNLYKQ 230

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M+      P  +L + T +  L +  +V EA   L  +   +  P +  +++ +    + 
Sbjct: 231 MLNS-GIQPS-LLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRN 288

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
            +   A  ++D  MV  G  P+S+TY+ +   L    RV E      EMI+   +PT   
Sbjct: 289 RNLDLAFGVFD-RMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYT 347

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
               IT L   +  E AIE+   + + G  P   +   L+ GL  LG+L        +ML
Sbjct: 348 YTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKML 407

Query: 423 NRRILIYEVTMHKL 436
              ++   VT + L
Sbjct: 408 KEGLVPNTVTYNAL 421



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 1/121 (0%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++ +V  L + GRF +    V+ MKE G       + S+  ++C   + D A+  F  +
Sbjct: 791 TYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSI 850

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G +  +    +L+ A+C+          F N ++K  + D   + +L++G  KEG +
Sbjct: 851 EAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGEL 910

Query: 234 E 234
           +
Sbjct: 911 D 911


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 161/364 (44%), Gaps = 8/364 (2%)

Query: 95  PSSAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFAS 152
           P  A D +R        ++ Y  N+MV    K   F+++   +  M++  V   + T   
Sbjct: 137 PHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNV 196

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + D+   AG  + A+   D M   G++  +V  NS+L  +CR      +A E    +   
Sbjct: 197 MVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRS-GMWDKAWEVFKEMDDF 255

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            V PD  SF IL+ G+ + G +EEA K + EM  R    P+ ++++   +    R  ++D
Sbjct: 256 GVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHR-GIKPD-LVSFSCLIGLFARRGKMD 313

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
            A+ +LR M+     P    ++  +    +    + A+++ D  MV  G  PD +TYN +
Sbjct: 314 HAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRD-EMVGCGCLPDVVTYNTL 372

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
              L K +R+ + E   +EM +    P      T I       + + A+++++ +L   +
Sbjct: 373 LNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRL 432

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIF 451
            P   + N L+ G+   G L       ++M +R I    VT   L  + + E   + D F
Sbjct: 433 RPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS-HCEKGQVEDAF 491

Query: 452 DSLE 455
             L+
Sbjct: 492 GFLD 495



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 146/326 (44%), Gaps = 14/326 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK-----EDGVLSLPTFASIFDSYCGAG 161
           RG +    +++ ++ +  + G+ +     +R M+      DGV+    +  +   +C AG
Sbjct: 290 RGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVI----YTMVIGGFCRAG 345

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSF 220
              +A+   D M   G   DVV  N+LL+ +C+ E +   A   LN ++ + V PD  +F
Sbjct: 346 LMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK-ERRLLDAEGLLNEMRERGVPPDLCTF 404

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ G+  EG +++A + F  M+ +    P+ ++ Y T +  + R   +D+A      M
Sbjct: 405 TTLIHGYCIEGKLDKALQLFDTMLNQ-RLRPD-IVTYNTLIDGMCRQGDLDKANDLWDDM 462

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                FP    +S  +D   +      A    D  M+  G  P+ +TYN I +   ++  
Sbjct: 463 HSREIFPNHVTYSILIDSHCEKGQVEDAFGFLD-EMINKGILPNIMTYNSIIKGYCRSGN 521

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           V + +KF  +M+ N+  P  +   T I   +  D+   A ++ N + +  + P   + N 
Sbjct: 522 VSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNM 581

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRI 426
           L+ G    G + +     E+M  + I
Sbjct: 582 LINGFSVHGNVQEAGWIFEKMCAKGI 607



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 161/350 (46%), Gaps = 7/350 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +     +N ++  L ++G +++ W   + M + GV   + +F  +   +C  G+ +E
Sbjct: 220 KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEE 279

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A+  +  M   G++ D+V+ + L+    R+  +   A+ +L  ++   + PDG  + +++
Sbjct: 280 ALKIYKEMRHRGIKPDLVSFSCLIGLFARR-GKMDHAMAYLREMRCFGLVPDGVIYTMVI 338

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ + G + +A +   EMV      P+ V+ Y T L  L + +++ +A   L  M+   
Sbjct: 339 GGFCRAGLMSDALRVRDEMVG-CGCLPD-VVTYNTLLNGLCKERRLLDAEGLLNEMRERG 396

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P L  F+  +           A+QL+D M+      PD +TYN + + + +   + + 
Sbjct: 397 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLN-QRLRPDIVTYNTLIDGMCRQGDLDKA 455

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
              + +M   E  P  +  +  I    +  + E A    + ++  GILP   + N ++ G
Sbjct: 456 NDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKG 515

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
               G +S  ++F ++M+  ++    +T + L   +  E + M D F  L
Sbjct: 516 YCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDK-MHDAFKLL 564



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 148/348 (42%), Gaps = 15/348 (4%)

Query: 57  CEILAHASSDDIESALA------CTGIIPTPDLVHEVLQLSYDSPSSAVDFFR----WAG 106
           C I   A    ++ A+A      C G++P   +++ ++   +       D  R      G
Sbjct: 301 CLIGLFARRGKMDHAMAYLREMRCFGLVPD-GVIYTMVIGGFCRAGLMSDALRVRDEMVG 359

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
            G       +N +++ L K  R       +  M+E GV   L TF ++   YC  GK D+
Sbjct: 360 CGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDK 419

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  FD M    +  D+V  N+L+  +CRQ +       + +   + + P+  +++IL++
Sbjct: 420 ALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILID 479

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              ++G VE+A     EM+ +      +++ Y + +    R   V +  KFL+ M     
Sbjct: 480 SHCEKGQVEDAFGFLDEMINKGIL--PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 537

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P L  ++  +   +K +    A +L + MM      PD +TYNM+      +  V E  
Sbjct: 538 SPDLITYNTLIHGYIKEDKMHDAFKLLN-MMEKEKVQPDVVTYNMLINGFSVHGNVQEAG 596

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
             F +M     +P      + I   + A   + A ++ + +L+ G  P
Sbjct: 597 WIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAP 644


>gi|115466100|ref|NP_001056649.1| Os06g0125300 [Oryza sativa Japonica Group]
 gi|6983867|dbj|BAA90802.1| salt-inducible protein-like [Oryza sativa Japonica Group]
 gi|113594689|dbj|BAF18563.1| Os06g0125300 [Oryza sativa Japonica Group]
 gi|125553869|gb|EAY99474.1| hypothetical protein OsI_21443 [Oryza sativa Indica Group]
 gi|125595884|gb|EAZ35664.1| hypothetical protein OsJ_19951 [Oryza sativa Japonica Group]
          Length = 535

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 139/305 (45%), Gaps = 10/305 (3%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           +     G G  D A+   D M   G+  DVV   ++LSA C + +       F + +   
Sbjct: 199 LLKGLVGIGDLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQKLFDDIIASG 258

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PD   + +L++G+ + GN+++A +   EM E     P  V  Y   +    + ++  E
Sbjct: 259 RRPDVTMYTVLIDGYCQCGNLQDAARIMDEM-EAARVQPNEV-TYSVVIEACCKEEKPIE 316

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A  F+R M G    P     +  +D+L +   S  A QLW   M      PD++  + + 
Sbjct: 317 ARDFMREMLGAGYVPDTALGAKVVDVLCQDGKSEEAYQLWR-WMEKKNVPPDNMVTSTLI 375

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
             L KN  V E    F E+ +  ++P+ L   + I+ L + +E + A  +W+ ++E G  
Sbjct: 376 YWLCKNGMVREARNLFDELERG-FKPSLLTYNSLISGLCENEELQEAGRVWDDMVERGYE 434

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKAFYNESRSMR 448
           P   +   L+ GL   G+ ++     EEM++R      L+++V +  L +  + +  ++R
Sbjct: 435 PNAMTYEALIKGLCKTGKPNEGATVFEEMVSRGCKPSSLLFQVLVDSLSEPRHED--TIR 492

Query: 449 DIFDS 453
            I ++
Sbjct: 493 KILET 497



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 3/212 (1%)

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           K  + P+  S  ILL+G    G+++ A K   EM       P+ V+ Y T L        
Sbjct: 186 KLYITPNLVSCNILLKGLVGIGDLDAALKVLDEM-PGLGITPD-VVTYTTVLSAYCGKGD 243

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           ++ A K    +      P +  ++  +D   +  +   A ++ D M       P+ +TY+
Sbjct: 244 IEGAQKLFDDIIASGRRPDVTMYTVLIDGYCQCGNLQDAARIMDEMEAAR-VQPNEVTYS 302

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
           ++ E   K ++  E   F  EM+   + P     A  + +L    + E A ++W ++ + 
Sbjct: 303 VVIEACCKEEKPIEARDFMREMLGAGYVPDTALGAKVVDVLCQDGKSEEAYQLWRWMEKK 362

Query: 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            + P     + L+  L   G + + R   +E+
Sbjct: 363 NVPPDNMVTSTLIYWLCKNGMVREARNLFDEL 394



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 3/156 (1%)

Query: 93  DSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA 151
           + P  A DF R   G G          +VDVL ++G+ E+ +   R M++  V       
Sbjct: 312 EKPIEARDFMREMLGAGYVPDTALGAKVVDVLCQDGKSEEAYQLWRWMEKKNVPPDNMVT 371

Query: 152 SIFDSY-CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
           S    + C  G   EA   FD +   G +  ++  NSL+S +C  E        + + V+
Sbjct: 372 STLIYWLCKNGMVREARNLFDELE-RGFKPSLLTYNSLISGLCENEELQEAGRVWDDMVE 430

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           +  +P+  ++  L++G  K G   E    F EMV R
Sbjct: 431 RGYEPNAMTYEALIKGLCKTGKPNEGATVFEEMVSR 466


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 113/260 (43%), Gaps = 4/260 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ TF S+ D YC  GK ++A    D M   G+E DVV  N+L+S  C+        + F
Sbjct: 547 TIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILF 606

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              + K V P   ++ I+L+G  + G    A K F EM++        +  Y+  L  L 
Sbjct: 607 REMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMID--SGTAVDIDTYKILLKGLC 664

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           R    DEA+     +   +C   +   +  ++ L K+     A  L+  +    G  P+ 
Sbjct: 665 RNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAIST-SGLVPNV 723

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
            TY ++   L+K   V E +  F  M K+   P+       I MLL   +  +    +  
Sbjct: 724 STYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDI-VKAGYYMS 782

Query: 386 ILENGILPLEASANELLVGL 405
            ++  I+ LEAS   LL+ L
Sbjct: 783 KVDGTIISLEASTTSLLMSL 802



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 125/278 (44%), Gaps = 5/278 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFDVM 173
           ++++++      GRF  M N    M + G++S     +I   ++   G  DEA++ F  M
Sbjct: 374 SYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEM 433

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              GV  +VV  ++L+SA CR         +F   +   ++P+   +  L+ G+   G++
Sbjct: 434 QGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDL 493

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LRVMKGENCFPTLKFF 292
            +A +   EM+ +    P  V          I G+ +D    F L +  G+   PT+  F
Sbjct: 494 VKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDR--PTIVTF 551

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           ++ +D    +     A  + D  MV  G  PD +T N +     K+ ++ +    F EM+
Sbjct: 552 NSLIDGYCLVGKMEKAFGVLD-AMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREML 610

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
             + +PT +     +  LL A     A ++++ ++++G
Sbjct: 611 HKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSG 648



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/335 (20%), Positives = 143/335 (42%), Gaps = 21/335 (6%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFD 171
           ++N ++  L  + R ++  + V+ M ++G    P   +F ++   +   G+  +A   F+
Sbjct: 197 SYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFN 256

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M   GV  DV   NS++ A+C+              V K V+PDG ++  ++ G+   G
Sbjct: 257 EMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSG 316

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           + +E+ K F +M  +    P+ V  + +F+ +L +  +  +A +  + M  +   P +  
Sbjct: 317 HWKESAKMFRKMTSK-GLIPDTV-TFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVS 374

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFH-----GAFPDSLTYNMIFECLIKNKRVHEVEK 346
           +S      + L+      +  D+  +FH     G   +    N++     K   + E   
Sbjct: 375 YS------ILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAML 428

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            F EM     +P  +  +T I+          A+E ++ ++  GI P  A  + L+ G  
Sbjct: 429 VFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFC 488

Query: 407 NLGRLSDVRRFAEEMLNR-----RILIYEVTMHKL 436
             G L   + F  EM+++      I+ +   +H L
Sbjct: 489 MHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSL 523



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 75/190 (39%), Gaps = 2/190 (1%)

Query: 259 TFLITLIRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
           TFL  L   K+ DEA+   L  M   +C P    ++  +  L   + S  A+ +   M  
Sbjct: 164 TFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAK 223

Query: 318 FHG-AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
             G   PD +++N +     K   V +    F+EM++    P      + +  L  A   
Sbjct: 224 EGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAM 283

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           + A  +   +++ G+ P   + N ++ G    G   +  +   +M ++ ++   VT    
Sbjct: 284 DKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSF 343

Query: 437 KKAFYNESRS 446
             +     RS
Sbjct: 344 MSSLCKHGRS 353


>gi|449437378|ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
 gi|449503560|ref|XP_004162063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
          Length = 615

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 103/474 (21%), Positives = 197/474 (41%), Gaps = 63/474 (13%)

Query: 17  IPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHAS---SDDIESALA 73
           +PS+S+  ++P S               +A Y  +    I  IL+  S      +E AL 
Sbjct: 62  LPSNSAVISNPNSA---------IDVKFEASYSPNDLSTISSILSDRSVRPGAALEDALD 112

Query: 74  CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQ 131
            TGI+P+  L+  V      SP      F WA +     P A  +N +++VL K+  F+ 
Sbjct: 113 RTGIVPSSSLLEAVFDHFDSSPKFLHSLFLWAAKKSGFRPSAALFNRLINVLAKSREFDS 172

Query: 132 MWNAV----RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD----VMSMHGVEQDVV 183
            W+ +    R  +E  ++S+  F  +   Y  AG    A+ +++    + ++ G   + +
Sbjct: 173 AWSLITSRLRGGEESFLVSVEVFVILIRRYARAGMVQPAIRTYEFACNLETISGTGSEGL 232

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKI---VDPDGDSFAILLEGWEKEGNVEEANK-- 238
               LL ++C+ E     A E+ NR +++    +P   ++ IL+ GW +   ++ A +  
Sbjct: 233 -FEILLDSLCK-EGHVRVASEYFNRKREMGSSFEPSIRAYNILINGWFRSRKLKHAQRLW 290

Query: 239 -------------TFGEMVE------------------RFEWNPEHVLAYETFLITLIRG 267
                        T+G ++E                  R E    + + Y   +  L   
Sbjct: 291 FEMKKNKISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIVYNPIVDALGEA 350

Query: 268 KQVDEALKFL-RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
            +  EAL  + R M  E   PT+  +++ +    K  D + A ++   MM+  G  P   
Sbjct: 351 GRFKEALGMMERFMVLEQG-PTISTYNSLVKGYCKAGDLSGASKILK-MMIGRGFTPTPT 408

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           TYN  F    K  ++ E    +++MI++ + P  L     + ML + +   +A+++ N +
Sbjct: 409 TYNYFFRFFSKYGKIEESMSLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEM 468

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
              G     A++  L+  L  + +  +     E M++R I+   +T  +L   F
Sbjct: 469 KARGFDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEF 522


>gi|15217756|ref|NP_171744.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806504|sp|Q9FZ19.2|PPR5_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g02420
 gi|332189307|gb|AEE27428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 491

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 160/369 (43%), Gaps = 54/369 (14%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVD 121
           +++ +L+ +GI  + DL+  VL+    S+ +P   ++F+R+A   RG   S ++ + M+ 
Sbjct: 57  ELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLDTMLY 116

Query: 122 VLGKNGRFEQMWN-AVRVMKEDGVLSLPTFASI----FDSYCGAGKYDEAVMSFDVMSMH 176
           +LG+N +F+Q+W   +   ++D  L  P    +        C   +  E+   F  +   
Sbjct: 117 ILGRNRKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRLVPD 176

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE-------- 228
               D    N+LL  +C QE   + A    + +K    PD  +F ILL GW+        
Sbjct: 177 FF--DTACFNALLRTLC-QEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSSEEAEAF 233

Query: 229 ------------------------KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
                                   K+  +E+A K   +M E  E  P+ V+ Y T +  L
Sbjct: 234 FEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREE-EETPD-VITYTTVIGGL 291

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALD---ILVKLNDSTHAVQLWDIMMVFHGA 321
               Q D+A + L+ MK   C+P +  ++ A+    I  +L D+   V      MV  G 
Sbjct: 292 GLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVD----EMVKKGL 347

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            P++ TYN+ F  L     +    + +  M+ NE  P   +C   I M    ++ ++A+ 
Sbjct: 348 SPNATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMR 407

Query: 382 IWNYILENG 390
           +W  ++  G
Sbjct: 408 LWEDMVVKG 416


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 157/346 (45%), Gaps = 15/346 (4%)

Query: 102 FRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYC 158
           FR   +   ++P     N++V  + K+G  E+    +  MK  G V  + T+ SI  + C
Sbjct: 191 FREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALC 250

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDG 217
            AGK  EA      MS      D+V  N+LL   C+      RALE L  + ++ + PD 
Sbjct: 251 VAGKVVEAAEILKTMS---CSPDLVTFNTLLDGFCKA-GMLPRALEVLEEMCRENILPDV 306

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++ IL+ G  + G V+ A     E+V R  + P+ V+AY + +  L +  +++EA K +
Sbjct: 307 ITYTILVNGLCRVGQVQVAFYLLEEIV-RQGYIPD-VIAYTSLVDGLCKSGEIEEAHKLV 364

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
           + M    C   +  +S+ +    +  +   A ++   M+  +   P   TYN++   LIK
Sbjct: 365 KEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSIN-MVPPLFTYNIVLGGLIK 423

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
           +  + +      +++   + P  +   T I  L  A+    A ++ + +   G  P + +
Sbjct: 424 DGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVT 483

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA 439
              ++ GL  +GR+ D      EM  +R    +++Y   +  L K+
Sbjct: 484 LGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKS 529



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 137/333 (41%), Gaps = 7/333 (2%)

Query: 95  PSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151
           P  A+ FF WAG   G +   +++N ++D+L K+G   +     + +   G   +L TF 
Sbjct: 7   PDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFK 66

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
            +    C AG+   A+     +    V  DV   N L+  + +  N       F N    
Sbjct: 67  ILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESS 126

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            V P+  ++  ++ G  K GN+E+A +   EM+ +   +   ++ Y T +    R  ++ 
Sbjct: 127 RVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIR 186

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           EA  F   MK     P +   +  +  + K  D   A+++ D  M   G  PD +TYN I
Sbjct: 187 EACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILD-GMKLAGPVPDVITYNSI 245

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
              L    +V E  +    M      P  +   T +     A     A+E+   +    I
Sbjct: 246 IHALCVAGKVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENI 302

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           LP   +   L+ GL  +G++       EE++ +
Sbjct: 303 LPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQ 335



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 140/335 (41%), Gaps = 14/335 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D   K G   +    +  M  + +L  + T+  + +  C  G+   A    + + 
Sbjct: 274 FNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIV 333

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI-----LLEGWEK 229
             G   DV+A  SL+  +C+     S  +E  +++ K +   G    +     L+ G+ +
Sbjct: 334 RQGYIPDVIAYTSLVDGLCK-----SGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCR 388

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            GNV +A +   EMV      P  +  Y   L  LI+   + +A+  +  +      P +
Sbjct: 389 AGNVHKAREILAEMVSINMVPP--LFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDV 446

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             ++  +D L K N    A  L D  M   G FP+ +T   +   L +  RV +      
Sbjct: 447 VTYNTLIDGLCKANRVREACDLAD-EMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVV 505

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM +    P  +   + I  L  +D  + A  + + +   G+   + +  +L+V + + G
Sbjct: 506 EMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGG 565

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           R+++     +EM+ R  L    T   L++A  + S
Sbjct: 566 RVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNS 600


>gi|326513918|dbj|BAJ92109.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 459

 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 154/377 (40%), Gaps = 46/377 (12%)

Query: 81  PDLVHEVLQLSYDS-PSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVR 137
           PDL   V++ +  S P  A  F  W       SP A  ++ ++  L +   F  +W    
Sbjct: 77  PDLALRVIRAAAPSEPLHAARFLAWIRAKPNFSPSADHFDALLLPLARARLFTHLWTQAS 136

Query: 138 VMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
            M+  G+ LS  TF+++  SY  +   ++AV  F+ +   G  Q     N+LL A+C   
Sbjct: 137 DMRALGLPLSPATFSAVISSYGHSRLAEQAVEVFNRLPHFGCPQTTEVYNALLDALCANG 196

Query: 197 NQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           N    A + L R+ +K V PD  +F+ L++ W   G + EA     +M  R    P  V 
Sbjct: 197 NFAG-AYKLLRRMARKGVAPDRATFSTLVDAWCASGKLREAQAFLDDMATRGFRPP--VR 253

Query: 256 AYETFLITLIRGKQVDEALKF-LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
             +  +  L+R  +++EA  F LR+ K E   P +  F++    L    D   AV L   
Sbjct: 254 GRDLLVDGLVRAGRLEEAKAFALRITK-EGVLPDVATFNSLAQALCDAGDVEFAVGLLAD 312

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
                G  PD  TY ++   + K  R+ E  + F+  I++  +P P   A  +  L  A 
Sbjct: 313 ASS-RGMCPDISTYKVMLPAVAKAGRIEEAFRLFYAAIEDGHRPFPSLYAAIVKALCKAG 371

Query: 375 EPEIAIEIW--------------------------------NYIL---ENGILPLEASAN 399
               A   +                                NY+L   E G  P   + N
Sbjct: 372 RFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRFLDAANYLLEMSEAGFAPRAPTFN 431

Query: 400 ELLVGLRNLGRLSDVRR 416
            ++ GLR+LG+    RR
Sbjct: 432 VVVDGLRHLGKHDLARR 448


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 145/308 (47%), Gaps = 4/308 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           RG +     +  +V+ L K G  +   + ++ M++  +   +  + +I D  C     D+
Sbjct: 214 RGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDD 273

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   F+ M   G+  DV   NSL+S +C     +  +    N +++ ++P+  +F+ L++
Sbjct: 274 AFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALID 333

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + KEG + EA K + EM++R   +P+ +  Y + +       ++DEA     +M  ++C
Sbjct: 334 AFVKEGKLVEAEKLYDEMIKR-SIDPD-IFTYSSLINGFCMHDRLDEAKHMFELMISKDC 391

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
           FP +  ++  +    K       ++L+   M   G   +++TYN + + L +       +
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFR-EMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 450

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           K F +M+ +   P  +  +  +  L    + E A+ ++ Y+ ++ + P   + N ++ G+
Sbjct: 451 KIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 510

Query: 406 RNLGRLSD 413
              G++ D
Sbjct: 511 CKAGKVED 518



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 129/303 (42%), Gaps = 4/303 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F +   +G R   + +N ++  L   GR+      +  M E  +  ++ TF+++ D++  
Sbjct: 278 FNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVK 337

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            GK  EA   +D M    ++ D+   +SL++  C  +        F   + K   P+  +
Sbjct: 338 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 397

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  L++G+ K   VEE  + F EM +R      + + Y T +  L +    D A K  + 
Sbjct: 398 YNTLIKGFCKAKRVEEGMELFREMSQRGLVG--NTVTYNTLIQGLFQAGDCDMAQKIFKK 455

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M  +   P +  +S  LD L K      A+ +++ +       PD  TYN++ E + K  
Sbjct: 456 MVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK-SKMEPDIYTYNIMIEGMCKAG 514

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           +V +    F  +     +P  +   T I+        E A  ++  + E+G LP     N
Sbjct: 515 KVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYN 574

Query: 400 ELL 402
            L+
Sbjct: 575 TLI 577



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/384 (20%), Positives = 160/384 (41%), Gaps = 47/384 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y++N++++   +  +       + ++MK      + T +S+ + YC + +  +AV   D 
Sbjct: 116 YSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQ 175

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G + D V  N+L+  +    N+ S A+  +++ V++   PD  ++  ++ G  K G
Sbjct: 176 MVEMGYKPDTVTFNTLIHGLFLH-NKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRG 234

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-------- 283
           +++ A     +M E+ +   + V+ Y T +  L + K +D+A      M+ +        
Sbjct: 235 DIDLALSLLKKM-EKGKIEAD-VVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFT 292

Query: 284 -----NCF----------------------PTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
                +C                       P +  FS  +D  VK      A +L+D  M
Sbjct: 293 YNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD-EM 351

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
           +     PD  TY+ +      + R+ E +  F  MI  +  P  +   T I     A   
Sbjct: 352 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRV 411

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVT 432
           E  +E++  + + G++    + N L+ GL   G     ++  ++M++      I+ Y + 
Sbjct: 412 EEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 471

Query: 433 MHKLKKAFYNESRSMRDIFDSLER 456
           +  L K  Y +      +F+ L++
Sbjct: 472 LDGLCK--YGKLEKALVVFEYLQK 493



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 141/332 (42%), Gaps = 19/332 (5%)

Query: 129 FEQMWNAVRVMKE-DGVLSLP-------------TFASIFDSYCGAGKYDEAVMSFDVMS 174
           F ++ +A+  MK+ D V+SL              ++  + + +C   +   A+     M 
Sbjct: 83  FNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 142

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G E D+V ++SLL+  C  + + S A+  ++++ ++   PD  +F  L+ G       
Sbjct: 143 KLGYEPDIVTLSSLLNGYCHSK-RISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKA 201

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA     +MV+R    P+ V  Y   +  L +   +D AL  L+ M+       +  ++
Sbjct: 202 SEAVALVDQMVQR-GCQPDLV-TYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYN 259

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D L K      A  L++ M    G  PD  TYN +  CL    R  +  +    MI+
Sbjct: 260 TIIDGLCKYKHIDDAFALFNKMET-KGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIE 318

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
            +  P  +  +  I   +   +   A ++++ +++  I P   + + L+ G     RL +
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 378

Query: 414 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            +   E M+++      VT + L K F    R
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 125/299 (41%), Gaps = 7/299 (2%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           K D+A+  F  M        +V  N LLSAI + + +    +    R++ + +  D  S+
Sbjct: 60  KLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMK-KFDLVISLGERMQNLRISYDLYSY 118

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            IL+  + +   +  A    G+M+ +  + P+ ++   + L      K++ +A+  +  M
Sbjct: 119 NILINCFCRRSQLPLALAVLGKMM-KLGYEPD-IVTLSSLLNGYCHSKRISDAVALVDQM 176

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                 P    F+  +  L   N ++ AV L D  MV  G  PD +TY  +   L K   
Sbjct: 177 VEMGYKPDTVTFNTLIHGLFLHNKASEAVALVD-QMVQRGCQPDLVTYGAVVNGLCKRGD 235

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           +        +M K + +   +   T I  L      + A  ++N +   GI P   + N 
Sbjct: 236 IDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNS 295

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 457
           L+  L N GR SD  R    M+ R+I    VT   L  AF  E +      ++D + +R
Sbjct: 296 LISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 120/283 (42%), Gaps = 7/283 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     K+D  +   + M    +  D+ + N L++  CR+ +Q   AL  
Sbjct: 79  SIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRR-SQLPLALAV 137

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  + + LL G+     + +A     +MVE   + P+ V  + T +  L
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE-MGYKPDTV-TFNTLIHGL 195

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-P 323
               +  EA+  +  M    C P L  +   ++ L K  D   A+ L   M    G    
Sbjct: 196 FLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKME--KGKIEA 253

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D + YN I + L K K + +    F++M     +P      + I+ L +      A  + 
Sbjct: 254 DVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLL 313

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           + ++E  I P   + + L+      G+L +  +  +EM+ R I
Sbjct: 314 SNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 356


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 155/372 (41%), Gaps = 60/372 (16%)

Query: 116 WNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +N+M++ L K GRF++   +W   R+ K +    + T++S+    C AG  D AV  +  
Sbjct: 260 YNIMINGLCKCGRFDESLEIWE--RMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKE 317

Query: 173 MSMHGVEQDVVAVNSLLSAICR---------------QEN-QTSRALEFLNR-------- 208
           +    +  D V  N++L+  CR               +EN QT  +   L +        
Sbjct: 318 IVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQTVVSYNILIKGLFENGKV 377

Query: 209 ----------VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV--LA 256
                      KK   P+  ++ +L+ G  K G + +A K F E     E  P  +   A
Sbjct: 378 EEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEA----EDGPGKLDAYA 433

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGEN-------CFPTLKFFSNALDILVKLNDSTHAV 309
           Y + +  L +  ++DEA+  +  M           C P +  F  A     KL D+ +  
Sbjct: 434 YSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRA----SKLEDAINFF 489

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           +     M   G  P  ++YN + + L K +R  E   F  EM++ EW+P  + C+  +  
Sbjct: 490 R----EMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDG 545

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
           L    + E+A+ +W   L+ G  P     N L+ GL ++ +L D  +    M     +  
Sbjct: 546 LCQEKKIEMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPN 605

Query: 430 EVTMHKLKKAFY 441
            VT + L +  Y
Sbjct: 606 LVTRNTLMEGLY 617



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 156/339 (46%), Gaps = 6/339 (1%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G+    +  ++N+++  L +NG+ E+  +   ++ + G      T+  +    C  G+ +
Sbjct: 354 GKENCQTVVSYNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLN 413

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAIL 223
           +A+  F        + D  A +S++  +C+ E +   A+  +N++ K+    D      L
Sbjct: 414 KALKIFKEAEDGPGKLDAYAYSSMVDGLCK-EGRMDEAISIVNQMDKRGYKLDPHVCNPL 472

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G+ +   +E+A   F EM E    +P  +++Y T +  L + ++  EA  F++ M  +
Sbjct: 473 INGFVRASKLEDAINFFREM-ECKGCSPT-IVSYNTLIKGLCKAERFSEAYSFVKEMLEK 530

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P +   S  +D L +      A+ LW    +  G  PD   YN++   L    ++ +
Sbjct: 531 EWKPDMITCSLLMDGLCQEKKIEMALNLWQ-QALDKGFKPDITMYNILMHGLCSVCKLED 589

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
             + +  M ++   P  +   T +  L    + E A EIW+ IL++G+ P   S N  + 
Sbjct: 590 ALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISYNITIK 649

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
           GL +  R+SD   F  + LNR IL   VT + L +A  N
Sbjct: 650 GLCSCSRISDAIEFLNDALNRGILPTAVTWNILVRAAVN 688



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 146/322 (45%), Gaps = 10/322 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFE---QMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           RG       +N+++D   K+G ++   ++W   R++K+  V  ++ T+  + +  C  G+
Sbjct: 215 RGVVADVTCYNMLIDGFFKHGDYDKGKEIWE--RLVKDCSVYPNVVTYNIMINGLCKCGR 272

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           +DE++  ++ M+ +  E+D+   +SL+  +C   N       +   V+  +  D  +   
Sbjct: 273 FDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNA 332

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +L G+ + G ++E+ + +  M +    N + V++Y   +  L    +V+EA+    ++  
Sbjct: 333 MLNGFCRAGKIKESFELWMVMGKE---NCQTVVSYNILIKGLFENGKVEEAISIWELLCK 389

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           + C P    +   +  L K      A++++       G   D+  Y+ + + L K  R+ 
Sbjct: 390 KGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKL-DAYAYSSMVDGLCKEGRMD 448

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E     ++M K  ++  P  C   I   + A + E AI  +  +   G  P   S N L+
Sbjct: 449 EAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLI 508

Query: 403 VGLRNLGRLSDVRRFAEEMLNR 424
            GL    R S+   F +EML +
Sbjct: 509 KGLCKAERFSEAYSFVKEMLEK 530



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 145/324 (44%), Gaps = 7/324 (2%)

Query: 94  SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRF-EQMWNAVRVMKEDGVLSLPTFA- 151
           +P SA+  F  A R +  S + ++ ++  L  + R    +   V ++K          A 
Sbjct: 25  NPLSALSLFESASRNKSHSAHVFHHILRRLAADSRLVSHVSRIVDIVKAQKCPCKEDVAL 84

Query: 152 SIFDSYCGAGKYDEAVMSFDVMS-MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
           ++  +Y      ++A+ +F  M  + G +  V + N+LL+A   + N+  RA  F    +
Sbjct: 85  TVIKAYAKNKMSNKALDTFQNMQDIFGCKPGVRSYNTLLNAFV-ELNEWDRAESFSRYFE 143

Query: 211 KI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + V P+  ++ IL++   K+  +E+A      M  +    P+ V +Y T +  +++   
Sbjct: 144 SMDVSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQ-NLKPD-VFSYGTLINGMVKVGD 201

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           +  ALK    M        +  ++  +D   K  D     ++W+ ++     +P+ +TYN
Sbjct: 202 LLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYN 261

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
           ++   L K  R  E  + +  M KNE +      ++ I  L +A   + A+ ++  I+E+
Sbjct: 262 IMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVES 321

Query: 390 GILPLEASANELLVGLRNLGRLSD 413
            ++    + N +L G    G++ +
Sbjct: 322 SLVVDAVTHNAMLNGFCRAGKIKE 345


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 146/332 (43%), Gaps = 13/332 (3%)

Query: 131 QMWNAVRVMKEDGVL----SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           ++ +AV++  E G +    SL T+ +I    C  G    A+     M   G + DVVA N
Sbjct: 156 KIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYN 215

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           +++ ++C+          F   V + + P+  +++ +L G+   G + EA   F +M+ R
Sbjct: 216 TVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGR 275

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P  V  +   +  L +   + EA +   +M      P    +S  +D     +   
Sbjct: 276 -NVMPNTV-TFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMD 333

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            A +L+DI MV  G  P    YN++     K++R++E +    EM   +  P  +  +T 
Sbjct: 334 EAQKLFDI-MVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTL 392

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR- 425
           +     A  P++A +++  +   G+LP   + + LL GL   G L +  R  + M   + 
Sbjct: 393 MQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKI 452

Query: 426 ---ILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
              I IY + +  +    + +  + R++F +L
Sbjct: 453 EPHICIYNILIQGMCN--FGKLEAARELFSNL 482



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 142/330 (43%), Gaps = 6/330 (1%)

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV 136
           ++    ++H    L   + ++++ F +  GR    +   + ++VD L K G   +     
Sbjct: 246 VVTYSSILHGFCNLGQLNEATSL-FKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVF 304

Query: 137 RVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
            +M E+GV     T++++ D YC   + DEA   FD+M   G    V   N L++  C+ 
Sbjct: 305 EMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKS 364

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                          + + PD  +++ L++G+ + G  + A K F EM   +   P+ + 
Sbjct: 365 RRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCS-YGLLPDSI- 422

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y   L  L +   +DEA + L+ M+     P +  ++  +  +        A +L+  +
Sbjct: 423 TYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNL 482

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
            V  G  P  +TY ++   L+K    +E  + F +M+ N   P       AI   L   +
Sbjct: 483 FV-KGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGD 541

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGL 405
           P  A+ +   ++  G    ++S  ++L+ L
Sbjct: 542 PSNAVRLIEEMVGRG-FSADSSTFQMLLDL 570



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 170/412 (41%), Gaps = 26/412 (6%)

Query: 55  IICEILAHASSDDIESALACTG------IIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAG 106
           I+   L H++ D +  A +  G      + PT      +L    S      AV  F   G
Sbjct: 109 ILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIG 168

Query: 107 R-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           + G   S   +  ++  L K G        ++ M+E G    +  + ++ DS C   + +
Sbjct: 169 KMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRAN 228

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA+  F  M   G+  +VV  +S+L   C           F   + + V P+  +F IL+
Sbjct: 229 EAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILV 288

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G  KEG + EA + F EM+      P+    Y   +       Q+DEA K   +M G+ 
Sbjct: 289 DGLCKEGMILEARRVF-EMMTENGVEPD-AYTYSALMDGYCLQSQMDEAQKLFDIMVGKG 346

Query: 285 CFPTLKFFSNALDILVK---LNDS-THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
             P+++ ++  ++   K   LN++ T   +++D  +      PD++TY+ + +   +  R
Sbjct: 347 FAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLT-----PDTVTYSTLMQGFCQAGR 401

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
               +K F EM      P  +  +  +  L      + A  +   + E+ I P     N 
Sbjct: 402 PQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNI 461

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHK-LKKAFYNESRSM 447
           L+ G+ N G+L   R     +  + I    + Y V +   LK+   NE+  M
Sbjct: 462 LIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEM 513


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 149/352 (42%), Gaps = 5/352 (1%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G+G       +N +++   + G  E+ +  +      G+   L T+ +I    C  GKYD
Sbjct: 285 GKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYD 344

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            A      M   G+  +    N+LL  ICR++N       F    ++ V PD  SF+ L+
Sbjct: 345 RAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLI 404

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
               + G++ +A   F EM ER    P++V+ Y   +    R   + +ALK    M    
Sbjct: 405 GVLARNGHLYQALMHFREM-ERSGIVPDNVI-YTILIDGFCRNGALSDALKMRDEMLARG 462

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           CF  +  ++  L+ L K      A  L++  MV  G  PD  T+  +     K+  + + 
Sbjct: 463 CFMDVVTYNTFLNGLCKKKMFADADMLFN-EMVERGMVPDFYTFTTLIRGYCKDGNMDKA 521

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
              F  M++   +P  +   T I     A E   A E+W+ ++   I+P   S   +L G
Sbjct: 522 LNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNG 581

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
             + G L +     ++ML + I    VT + L K  Y  S  M   ++ L +
Sbjct: 582 FCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKG-YCRSGDMPKAYEYLSK 632



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 149/342 (43%), Gaps = 4/342 (1%)

Query: 104 WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           ++ RG       +N ++  L K G++++  + +  M + G+  +  T+ ++    C    
Sbjct: 318 FSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDN 377

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
             EA   FD MS  GV  D+V+ +SL+  + R  +     + F    +  + PD   + I
Sbjct: 378 ILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTI 437

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G+ + G + +A K   EM+ R  +    V+ Y TFL  L + K   +A      M  
Sbjct: 438 LIDGFCRNGALSDALKMRDEMLARGCF--MDVVTYNTFLNGLCKKKMFADADMLFNEMVE 495

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
               P    F+  +    K  +   A+ L++  MV     PD +TYN + +   K   + 
Sbjct: 496 RGMVPDFYTFTTLIRGYCKDGNMDKALNLFE-AMVRTNLKPDKVTYNTLIDGFCKAGEMG 554

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
             ++ + +MI+ +  P  ++  T +     +     A+ + + +LE GI P   + N L+
Sbjct: 555 RAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLI 614

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            G    G +     +  +M++  I+    + + L   +  E+
Sbjct: 615 KGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEA 656



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/394 (21%), Positives = 154/394 (39%), Gaps = 42/394 (10%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFF-RWAGRGQRLS 112
           +C+I  +  + D+   +   G+ P     + +L      D+   A + F   + RG    
Sbjct: 337 LCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPD 396

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFD 171
             +++ ++ VL +NG   Q     R M+  G++      +I  D +C  G   +A+   D
Sbjct: 397 LVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRD 456

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M   G   DVV  N+ L+ +C+++      + F   V++ + PD  +F  L+ G+ K+G
Sbjct: 457 EMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDG 516

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+++A   F  MV R    P+ V  Y T                                
Sbjct: 517 NMDKALNLFEAMV-RTNLKPDKV-TYNTL------------------------------- 543

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
               +D   K  +   A +LWD  M+     PD ++Y  +      +  + E      +M
Sbjct: 544 ----IDGFCKAGEMGRAKELWDD-MIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQM 598

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           ++   +P  + C T I     + +   A E  + ++ NGI+P   S N L+ G      L
Sbjct: 599 LEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANL 658

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
                   EM  R +    +T + +   F  E +
Sbjct: 659 EKAFILINEMEKRGLQFNIITYNLILNGFCAEGK 692



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/402 (20%), Positives = 157/402 (39%), Gaps = 47/402 (11%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSY------DSPSSAVDFFRWAGRGQRLSPYAWNLMVD 121
           +ES ++      +  L++++L  +Y         S A    R   +G  +S  A N ++ 
Sbjct: 173 VESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRR--KGVSVSINACNKLLG 230

Query: 122 VLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
            L + G  +  W     +   G+ L++ T   + ++ C   K++  +     M   GV  
Sbjct: 231 GLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFA 290

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
           D+V  N+L++A CR E     A + LN    + ++P   ++  +L G  K G  + A   
Sbjct: 291 DIVTYNTLINAYCR-EGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDV 349

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
             EM++     P +   Y T L+ + R   + EA +    M      P L  FS+ + +L
Sbjct: 350 LIEMLQ-LGLTP-NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVL 407

Query: 300 VKLNDSTHAVQ---------------LWDIM-------------------MVFHGAFPDS 325
            +      A+                ++ I+                   M+  G F D 
Sbjct: 408 ARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDV 467

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TYN     L K K   + +  F+EM++    P      T I         + A+ ++  
Sbjct: 468 VTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEA 527

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           ++   + P + + N L+ G    G +   +   ++M+ + I+
Sbjct: 528 MVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDII 569



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 139/325 (42%), Gaps = 11/325 (3%)

Query: 75  TGIIPTPDLVHEVLQLSYDSPSSAVDFFRW----AGRGQRLSPYAWNLMVDVLGKNGRFE 130
           +GI+P  ++++ +L   +    +  D  +       RG  +    +N  ++ L K   F 
Sbjct: 426 SGIVP-DNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFA 484

Query: 131 QMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
                   M E G++    TF ++   YC  G  D+A+  F+ M    ++ D V  N+L+
Sbjct: 485 DADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLI 544

Query: 190 SAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
              C+   +  RA E  +  ++K + PD  S+  +L G+   G + EA     +M+E+  
Sbjct: 545 DGFCKA-GEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEK-G 602

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             P +++   T +    R   + +A ++L  M      P    ++  +D  +K  +   A
Sbjct: 603 IRP-NLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKA 661

Query: 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 368
             L + M    G   + +TYN+I        ++ E E+   +MI+    P     ++ I 
Sbjct: 662 FILINEMEK-RGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLIN 720

Query: 369 MLLDADEPEIAIEIWNYILENGILP 393
             +  D  + A    + +L+ G++P
Sbjct: 721 GHVSQDNMKEAFRFHDEMLQRGLVP 745


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 155/343 (45%), Gaps = 11/343 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+M++VL K G+ ++  + +  M+  GV  ++ T+ ++   YC  G+ + A M  D+
Sbjct: 237 YTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDI 296

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   GVE D     SL+S +C+   +   A   L ++K+I + P   ++  L++G+  +G
Sbjct: 297 MKNRGVEPDSYTYGSLISGMCKG-GKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKG 355

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           ++ +A     EMV R       V  Y   +  L    ++DEA   ++ M      P    
Sbjct: 356 DLVKAFGYRDEMVRRAIL--PTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSIT 413

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  ++   +  ++  A  L D  M+  G  P  +TY  +   L K  R+   +  F ++
Sbjct: 414 YNILINGYCRCGNAKKAFNLHD-EMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKI 472

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           I+    P  +     I         + A  +   + +  I+P E + N L+ G    G++
Sbjct: 473 IREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKV 532

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKL-----KKAFYNESRSMRD 449
            + R   +EM  R I    ++ + L     K+   N++ ++RD
Sbjct: 533 EEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRD 575



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 129/321 (40%), Gaps = 4/321 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG     Y +  ++  + K G+ E+    +  MKE G+L +  T+ ++ D YC  G   +
Sbjct: 300 RGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVK 359

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    D M    +   V   N L+ A+  +           +     + PD  ++ IL+ 
Sbjct: 360 AFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILIN 419

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ + GN ++A     EM+ +    P  ++ Y + +  L +  ++  A      +  E  
Sbjct: 420 GYCRCGNAKKAFNLHDEMISK-GIQPT-LVTYTSLIYVLSKRNRMKAADDLFEKIIREGA 477

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P L  F+  +D      +   A  L    M      PD +TYN + +   +  +V E  
Sbjct: 478 SPDLIMFNALIDGHCANGNLDRAFALLK-EMDKRNIVPDEVTYNTLMQGRCREGKVEEAR 536

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           +   EM +   +P  ++  T I+      +   A  I + +L  G  P   + N L+ GL
Sbjct: 537 ELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGL 596

Query: 406 RNLGRLSDVRRFAEEMLNRRI 426
               +        +EM+++ I
Sbjct: 597 CKNQQGDLAEELLKEMVSKGI 617



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 120/300 (40%), Gaps = 42/300 (14%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +NL++  L   G+ ++    ++ M + G++    T+  + + YC  G   +A    D M
Sbjct: 378 TYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEM 437

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G++  +V   SL+  + ++    +    F   +++   PD   F  L++G    GN+
Sbjct: 438 ISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNL 497

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A     EM +R    P+ V  Y T +    R  +V+EA + L+ MK            
Sbjct: 498 DRAFALLKEMDKR-NIVPDEV-TYNTLMQGRCREGKVEEARELLKEMKRR---------- 545

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
                                     G  PD ++YN +     K   +++      EM+ 
Sbjct: 546 --------------------------GIRPDHISYNTLISGYSKRGDINDAFTIRDEMLS 579

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
             + PT L     I  L    + ++A E+   ++  GI P +++   L+ G   +G++ D
Sbjct: 580 IGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEG---IGKVDD 636



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/386 (20%), Positives = 138/386 (35%), Gaps = 73/386 (18%)

Query: 143 GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR-------- 194
           G  S   F  +  + C   + D+A   FD+M   GV   +   N++LS   +        
Sbjct: 162 GTKSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVW 221

Query: 195 --------------------------QENQTSRALEFLNRVKKI-VDPDGDSFAILLEGW 227
                                     +E +  +A +F+  ++ + V P+  ++  ++ G+
Sbjct: 222 VLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGY 281

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
              G VE A      M  R    P+    Y + +  + +G +++EA   L  MK     P
Sbjct: 282 CSRGRVEGARMVLDIMKNR-GVEPDSY-TYGSLISGMCKGGKLEEASGILEKMKEIGLLP 339

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIM-------------MVFHGAF------------ 322
           T   ++  +D      D   A    D M             ++ H  F            
Sbjct: 340 TAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMI 399

Query: 323 ---------PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
                    PDS+TYN++     +     +      EMI    QPT +   + I +L   
Sbjct: 400 KDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKR 459

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 433
           +  + A +++  I+  G  P     N L+ G    G L       +EM  R I+  EVT 
Sbjct: 460 NRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTY 519

Query: 434 HKLKKAFYNESR--SMRDIFDSLERR 457
           + L +    E +    R++   ++RR
Sbjct: 520 NTLMQGRCREGKVEEARELLKEMKRR 545



 Score = 38.5 bits (88), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 3/127 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++    + G+ E+    ++ MK  G+     ++ ++   Y   G  ++A    D M
Sbjct: 518 TYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEM 577

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
              G    ++  N+L+  +C+ + Q   A E L   V K + PD  ++  L+EG  K  +
Sbjct: 578 LSIGFNPTLLTYNALIQGLCKNQ-QGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDD 636

Query: 233 VEEANKT 239
             EA+ +
Sbjct: 637 SSEASDS 643


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 143/321 (44%), Gaps = 4/321 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDE 165
           RG      +++ ++ V  +NG  +Q     R MK  G++      +I  + YC  G   E
Sbjct: 319 RGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSE 378

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+   D M   G   DVVA N++L+ +C+++        F   V++ V PD  +F  L+ 
Sbjct: 379 ALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIH 438

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  KEGN+ +A   FG M ++    P+ ++ Y   +    +  ++++A +    M     
Sbjct: 439 GHCKEGNMGKALSLFGIMTQK-NIKPD-IVTYNILIDGFCKTTEMEKANELWNEMISRKI 496

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
           FP    ++  ++    L   + A +LWD  M+  G  P  +T N + +   ++  + + +
Sbjct: 497 FPNHISYAILVNGYCNLGFVSEAFRLWD-EMIRKGIKPTLVTCNTVIKGYCRSGDLSKAD 555

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           +F  +MI     P  +   T I   +  +  + A  + N +   G+ P   + N +L G 
Sbjct: 556 EFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGF 615

Query: 406 RNLGRLSDVRRFAEEMLNRRI 426
              GR+ +      +M+ R I
Sbjct: 616 CRQGRMQEAELILRKMIERGI 636



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 163/373 (43%), Gaps = 41/373 (10%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKY 163
           A  G  L+ Y  N+MV+ L K+ + + +   +  M++ G+ + + T+ ++ ++YC  G  
Sbjct: 177 ARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLL 236

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            EA    + MS  G++  +   N++++ +C++  +  RA    N +  I + PD  ++  
Sbjct: 237 GEAFEVMNSMSGKGLKPTLFTYNAVINGLCKK-GRYVRAKGVFNEMLSIGLSPDTTTYNT 295

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL    +  N  EA   F +M+ R   +P+ ++++ + +    R   +D+AL + R MK 
Sbjct: 296 LLVESCRNNNFLEAKDIFSDMLHR-GVSPD-LISFSSLIGVSSRNGHLDQALMYFRDMKT 353

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
               P    ++  ++   +    + A+++ D M+   G   D + YN I   L K K + 
Sbjct: 354 SGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLE-QGCALDVVAYNTILNGLCKKKLLA 412

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAI-------------------------------TMLL 371
           +    F EM++    P      T I                                +L+
Sbjct: 413 DANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILI 472

Query: 372 DA----DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           D      E E A E+WN ++   I P   S   L+ G  NLG +S+  R  +EM+ + I 
Sbjct: 473 DGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIK 532

Query: 428 IYEVTMHKLKKAF 440
              VT + + K +
Sbjct: 533 PTLVTCNTVIKGY 545



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 144/337 (42%), Gaps = 4/337 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G+G + + + +N +++ L K GR+ +       M   G+     T+ ++    C    +
Sbjct: 247 SGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNF 306

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
            EA   F  M   GV  D+++ +SL+    R  +     + F +     + PD   + IL
Sbjct: 307 LEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTIL 366

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G+ + G + EA +   +M+E  +     V+AY T L  L + K + +A      M   
Sbjct: 367 INGYCRNGMMSEALEIRDKMLE--QGCALDVVAYNTILNGLCKKKLLADANALFDEMVER 424

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P    F+  +    K  +   A+ L+ IM       PD +TYN++ +   K   + +
Sbjct: 425 GVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQ-KNIKPDIVTYNILIDGFCKTTEMEK 483

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
             + ++EMI  +  P  ++ A  +    +      A  +W+ ++  GI P   + N ++ 
Sbjct: 484 ANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIK 543

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           G    G LS    F  +M++  +    +T + L   F
Sbjct: 544 GYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGF 580



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 124/289 (42%), Gaps = 6/289 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G  L   A+N +++ L K             M E GV+    TF ++   +C  G   +
Sbjct: 389 QGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGK 448

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A+  F +M+   ++ D+V  N L+   C+   +  +A E  N  + + + P+  S+AIL+
Sbjct: 449 ALSLFGIMTQKNIKPDIVTYNILIDGFCKT-TEMEKANELWNEMISRKIFPNHISYAILV 507

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+   G V EA + + EM+ R    P  V    T +    R   + +A +FL  M  E 
Sbjct: 508 NGYCNLGFVSEAFRLWDEMI-RKGIKPTLVTC-NTVIKGYCRSGDLSKADEFLGKMISEG 565

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P    ++  ++  VK      A  L + M    G  PD +TYN+I     +  R+ E 
Sbjct: 566 VGPDSITYNTLINGFVKGEYMDKAFFLINKMET-KGLQPDVVTYNVILNGFCRQGRMQEA 624

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           E    +MI+    P      T I   +  D  + A    + +L+ G +P
Sbjct: 625 ELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVP 673


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 137/294 (46%), Gaps = 5/294 (1%)

Query: 93  DSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTF 150
           D  S AVD   R    G + + + +  +++ + K+G      + +R M+   +   + T+
Sbjct: 209 DRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTY 268

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
             I D+ C  G+ D+A+  F  M   G++ +V   NSL+ + C        A    + + 
Sbjct: 269 TIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMIT 328

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
           + + P+  +F+ L++   KEG + EA   + EM+ R    P + + Y + +  L   K++
Sbjct: 329 RKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITR-GIEP-NTITYNSLIYGLCNDKRL 386

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
           DEA + + +M  + C P +  ++  ++   K       ++L+   M   G   D++TY+ 
Sbjct: 387 DEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFR-KMSLRGMIADTVTYST 445

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
           + +   +++++   +K F EM+     P  +  A  +  L D  E E A+ I +
Sbjct: 446 LIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILD 499



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 140/314 (44%), Gaps = 6/314 (1%)

Query: 115 AWNLMVDVLGKNGR-FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +++ L   GR FE +     ++    V  L T  +I +  C   +  EAV     M
Sbjct: 162 TFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARM 221

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
             +G + +      +L+ +C+  N T+ AL+ L +++ + + P   ++ I+++   K+G 
Sbjct: 222 MANGCQPNQFTYGPILNRMCKSGN-TASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGR 280

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A   F EM  +      +V  Y + + +     + D+  + LR M      P +  F
Sbjct: 281 LDDALSFFSEMETK--GIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTF 338

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           S  +D LVK    T A  L++  M+  G  P+++TYN +   L  +KR+ E  +    M+
Sbjct: 339 SALIDSLVKEGKLTEAKDLYN-EMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMV 397

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P        I     A + +  + ++  +   G++    + + L+ G     +L 
Sbjct: 398 SKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLI 457

Query: 413 DVRRFAEEMLNRRI 426
             ++  +EM+++ +
Sbjct: 458 VAKKVFQEMVSQGV 471



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/336 (19%), Positives = 149/336 (44%), Gaps = 6/336 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
           +G     Y  N+M++   +  +    ++A+ ++ K     +  TF ++ +  C  G+  E
Sbjct: 119 KGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFE 178

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           AV   D M +     D++ +N++++ +C ++ + S A++ + R+      P+  ++  +L
Sbjct: 179 AVELVDCMVLSQHVPDLITLNTIVNGLCLKD-RVSEAVDLIARMMANGCQPNQFTYGPIL 237

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
               K GN   A     +M  R +  P HV+ Y   +  L +  ++D+AL F   M+ + 
Sbjct: 238 NRMCKSGNTASALDLLRKMEHR-KIKP-HVVTYTIIIDNLCKDGRLDDALSFFSEMETKG 295

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
               +  +++ +             QL   M+      P+ +T++ + + L+K  ++ E 
Sbjct: 296 IKANVFTYNSLIGSFCSFGRWDDGAQLLRDMIT-RKITPNVVTFSALIDSLVKEGKLTEA 354

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
           +  ++EMI    +P  +   + I  L +    + A ++ + ++  G  P   + N L+ G
Sbjct: 355 KDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILING 414

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
                ++ D  R   +M  R ++   VT   L + F
Sbjct: 415 FCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGF 450



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/323 (19%), Positives = 138/323 (42%), Gaps = 42/323 (13%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A+ FF     +G + + + +N ++      GR++     +R M    +  ++ TF+++ D
Sbjct: 284 ALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALID 343

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC--RQENQTSRALEFLNRVKKIV 213
           S    GK  EA   ++ M   G+E + +  NSL+  +C  ++ ++ ++ ++ +  V K  
Sbjct: 344 SLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLM--VSKGC 401

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           DPD  ++ IL+ G+ K   V++  + F +M  R        + Y T +    + +++  A
Sbjct: 402 DPDIWTYNILINGFCKAKQVDDGMRLFRKMSLR--GMIADTVTYSTLIQGFCQSRKLIVA 459

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM-------------MVFHG 320
            K  + M  +   P +  ++  LD L    +   A+ + D M             ++ HG
Sbjct: 460 KKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHG 519

Query: 321 ---------------AFP------DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
                          + P      D  +YN++   L K   + E +  F +M ++ ++P 
Sbjct: 520 MCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPD 579

Query: 360 PLNCATAITMLLDADEPEIAIEI 382
                T I   L  ++   ++++
Sbjct: 580 GCTYNTLIRAHLRGNDITTSVQL 602



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 123/303 (40%), Gaps = 8/303 (2%)

Query: 147 LPT---FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           LPT   F  +F       +YD  +     M + G+  D+  +N +++  CR+  +   A 
Sbjct: 87  LPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRR-KLGFAF 145

Query: 204 EFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
             + ++ K+  +P+  +F  LL G   EG V EA +    MV     +   ++   T + 
Sbjct: 146 SAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMV--LSQHVPDLITLNTIVN 203

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
            L    +V EA+  +  M    C P    +   L+ + K  ++  A+ L    M      
Sbjct: 204 GLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLR-KMEHRKIK 262

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           P  +TY +I + L K+ R+ +   FF EM     +       + I         +   ++
Sbjct: 263 PHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQL 322

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
              ++   I P   + + L+  L   G+L++ +    EM+ R I    +T + L     N
Sbjct: 323 LRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCN 382

Query: 443 ESR 445
           + R
Sbjct: 383 DKR 385



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+A + D  C  G+ +EA+   D M    +E D+   N ++  +C           F + 
Sbjct: 477 TYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSL 536

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K V  D  S+ I+L G  K  ++ EA+  F +M E   + P+    Y T +   +RG 
Sbjct: 537 PSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKED-GYEPDGC-TYNTLIRAHLRGN 594

Query: 269 QVDEALKFLRVMK 281
            +  +++ +  MK
Sbjct: 595 DITTSVQLIEEMK 607



 Score = 42.7 bits (99), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 60/130 (46%), Gaps = 1/130 (0%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + +++D L  NG  E+    +  M +  + L +  +  I    C A K D+A   F  +
Sbjct: 477 TYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSL 536

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              GV++D+ + N +LS +C++ + +     F    +   +PDG ++  L+    +  ++
Sbjct: 537 PSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDI 596

Query: 234 EEANKTFGEM 243
             + +   EM
Sbjct: 597 TTSVQLIEEM 606


>gi|296081012|emb|CBI18516.3| unnamed protein product [Vitis vinifera]
          Length = 967

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 149/315 (47%), Gaps = 30/315 (9%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++++ L   G  ++  N ++ M+E+G V ++ T+ ++ + YC  G+Y  A+   D M 
Sbjct: 236 FNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMI 295

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNV 233
             G+E DV   N  +  +C   +++++A   L +++K ++ P+  ++  L+ G+ KEG +
Sbjct: 296 CKGIEADVCTYNVFIDNLC-TNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKI 354

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A + F EM  +F+ +P  V  Y   +         +EAL+ L  M+            
Sbjct: 355 GVAAQVFNEM-SKFDLSPNCV-TYNALIGGHCHVGDFEEALRLLDHMEAAG--------- 403

Query: 294 NALDILVKLNDS---THAVQLWDIMMV-FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
                 ++LN+    T A++++ +M    HGA  D  T N++   L ++ ++ E EKF  
Sbjct: 404 ------LRLNEHGNVTEAMKVYAVMNCNGHGA--DHFTCNVLVSSLCRDGKLGEAEKFLC 455

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
            M +    P  +     I       +P  A   ++ +++ G  P   +   LL GL   G
Sbjct: 456 HMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGG 515

Query: 410 RLSDVRRFAEEMLNR 424
            L + ++F    LNR
Sbjct: 516 NLVEAKKF----LNR 526



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 159/388 (40%), Gaps = 22/388 (5%)

Query: 76  GIIPTPDLVHEVLQLSYDS---PSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQ 131
           G++P   + ++ +   Y S   P +A  FF      GQ  S + +  ++  L K G   +
Sbjct: 461 GLVPN-SITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVE 519

Query: 132 MWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
               + R+    G +    + ++    C +G   EAV  FD M  + V  D    +SLL+
Sbjct: 520 AKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLT 579

Query: 191 AICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
            +CR+    +    F   + +  + P+   +  L++G  K G+ + A   F EM+++   
Sbjct: 580 GLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTC 639

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
            P+ V A+   + +  R  Q+ +A  F   M+     P L  ++  L    K       +
Sbjct: 640 -PDTV-AFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYL 697

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNK------------RVHEVEKFFHEMIKNEWQ 357
            L+  MM   G FPD LT++ +   L K+              + E     HEM++N   
Sbjct: 698 SLYSTMMR-EGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEESTVVLHEMLENGVI 756

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
           P      T I  +    + + A ++ + +   G    E + + ++ GL + G+  D    
Sbjct: 757 PKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLV 816

Query: 418 AEEMLNRRILIYEVTMHKLKKAFYNESR 445
            + ML  R+L    T   L   F  +++
Sbjct: 817 LDHMLRMRLLPTIATFTTLMHRFCRDAK 844



 Score = 43.1 bits (100), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 2/102 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ TF ++   +C   K  EA+    VM + G++ DVVA N L+  +C     ++ A E 
Sbjct: 828 TIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMC-ANGDSAAAFEL 886

Query: 206 LNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
              ++ + + P+  ++A+L++      N+ +  K   ++ ER
Sbjct: 887 YEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQER 928


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 144/348 (41%), Gaps = 38/348 (10%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGK 162
           RG   +P A  +N +V    + G  +     V +M+E+G    +L TF S+ +  C AG+
Sbjct: 37  RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGR 96

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A   FD M   G+  DVV+ N+LLS  C+          F    ++ + PD  +F  
Sbjct: 97  MEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTS 156

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPE------------------------------ 252
           L+    K GN+E+A     +M ER     E                              
Sbjct: 157 LIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG 216

Query: 253 ---HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
               V+ Y   +    +  ++D A + +R M+ +   P +  +S  +    K+ +   A 
Sbjct: 217 IQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAF 276

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           QL +  M+  G  PD++TY+ +   L + KR+++  + F  M++   QP      T I  
Sbjct: 277 QL-NQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDG 335

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
                  E A+ + + ++  G+LP   + + L+ GL    R  +  R 
Sbjct: 336 HCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRL 383



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 118/240 (49%), Gaps = 8/240 (3%)

Query: 125 KNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K G  EQ    V  M+E G+ ++  TF ++ D +C  G  D+A+++ + M   G++  VV
Sbjct: 163 KAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVV 222

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             N+L++  C+   +   A E +  ++ K V PD  +++ ++ G+ K GN++ A +   +
Sbjct: 223 CYNALINGYCKL-GRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQK 281

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M+++    P+ +  Y + +  L   K++++A +    M      P    ++  +D   K 
Sbjct: 282 MLKKGVL-PDAI-TYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKE 339

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
            +   A+ L D  M+  G  PD +TY+++   L K+ R  E  +   ++   +  P P N
Sbjct: 340 GNVEKALSLHD-EMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED--PVPDN 396



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 115/309 (37%), Gaps = 37/309 (11%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-ENQTSRALEFLN 207
           T+  +  + C  G+ +EAV     M   G   + V  N+L++A CR  E   +  +  L 
Sbjct: 12  TYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLM 71

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           R +    P+  +F  ++ G  K G +E A K F EMV   E     V++Y T L    + 
Sbjct: 72  REEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVR--EGLAPDVVSYNTLLSGYCKV 129

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM------------ 315
             + E+L     M      P +  F++ +    K  +   AV L   M            
Sbjct: 130 GCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTF 189

Query: 316 ----------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
                                 M   G  P  + YN +     K  R+    +   EM  
Sbjct: 190 TALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA 249

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
              +P  +  +T I+        + A ++   +L+ G+LP   + + L+ GL    RL+D
Sbjct: 250 KRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLND 309

Query: 414 VRRFAEEML 422
                E ML
Sbjct: 310 ACELFENML 318



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 3/171 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + S   +N +++   K GR +     +R M+   V   + T+++I   YC  G  D A
Sbjct: 216 GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSA 275

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
                 M   GV  D +  +SL+  +C ++        F N ++  V PD  ++  L++G
Sbjct: 276 FQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDG 335

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
             KEGNVE+A     EM+ +    P+ V+ Y   +  L +  +  EA + L
Sbjct: 336 HCKEGNVEKALSLHDEMIRKGVL-PD-VVTYSVLINGLSKSARTKEAHRLL 384



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 95/250 (38%), Gaps = 39/250 (15%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M  HGV  +V   N L+ A+C +                                   G 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCAR-----------------------------------GR 25

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKF 291
           +EEA    G+M  R      + + Y T +    R  ++D A + + +M+ E N  P L  
Sbjct: 26  LEEAVGVVGDM--RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVT 83

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           F++ ++ L K      A +++D  MV  G  PD ++YN +     K   +HE    F EM
Sbjct: 84  FNSMVNGLCKAGRMEGARKVFD-EMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEM 142

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
            +    P  +   + I     A   E A+ +   + E G+   E +   L+ G    G L
Sbjct: 143 TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFL 202

Query: 412 SDVRRFAEEM 421
            D     EEM
Sbjct: 203 DDALLAVEEM 212



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/197 (19%), Positives = 82/197 (41%), Gaps = 5/197 (2%)

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +V  Y   +  L    +++EA+  +  M+G  C P    ++  +    +  +   A ++ 
Sbjct: 9   NVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVV 68

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
            +M     A P+ +T+N +   L K  R+    K F EM++    P  ++  T ++    
Sbjct: 69  SLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCK 128

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
                 ++ +++ + + G++P   +   L+      G L        +M  R + + EVT
Sbjct: 129 VGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVT 188

Query: 433 MHKL-----KKAFYNES 444
              L     KK F +++
Sbjct: 189 FTALIDGFCKKGFLDDA 205



 Score = 41.6 bits (96), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           MV HG  P+  TYN++   L    R+ E      +M      P  +   T +     A E
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 376 PEIAIEIWNYILENG-ILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
            + A  + + + E G   P   + N ++ GL   GR+   R+  +EM+
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMV 108


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 127/273 (46%), Gaps = 4/273 (1%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +VD L K G+  +    V +M + GV   + T+ ++ D +C   + DEAV  FD+M   G
Sbjct: 281 VVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKG 340

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
              DV++  +L++  C+          F    +K   PD  ++  L+ G    G +++A 
Sbjct: 341 FAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAI 400

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
             F EMV R +  P+ ++ Y   L +L + + ++EA+  L+ ++  N  P ++ ++  +D
Sbjct: 401 ALFHEMVARGQ-MPD-LVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIID 458

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
            + +  +   A  L+  +    G  P   TYN++   L K   ++E  K F EM  N+  
Sbjct: 459 GMCRAGELEAARDLFSNLSS-KGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCS 517

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           P      T     L  +E   AI++   +L  G
Sbjct: 518 PDGCTYNTIARGFLQNNETLRAIQLLEEMLARG 550



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 130/295 (44%), Gaps = 9/295 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++    C  GK  EA+  FD M   G + +VV   +L++ +C+  N TS A+  L  
Sbjct: 137 TFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGN-TSAAIRLLRS 195

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +++    PD   +  +++   K+  V EA   F +MV +   +P+ +  Y + +  L   
Sbjct: 196 MEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQ-GISPD-IFTYTSLVHALCNL 253

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +       L  M      P +  FS  +D L K    T A ++ D MM+  G  PD +T
Sbjct: 254 CEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVD-MMIQRGVEPDVVT 312

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y  + +       + E  K F  M++  + P  ++  T I       + + A+ ++  + 
Sbjct: 313 YTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMC 372

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKK 438
               +P   + N L+ GL ++GRL D      EM+ R     ++ Y + +  L K
Sbjct: 373 RKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCK 427



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 135/308 (43%), Gaps = 17/308 (5%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  FA +  S      Y   +     M   GV  +V  +N L+++ C   N+   A   
Sbjct: 64  SIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFC-HLNRVGFAFSV 122

Query: 206 LNRVKKIV-DPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLIT 263
           L ++ K+   PD  +F  L+ G   EG + EA   F +M+ E F+ N   V+ Y T +  
Sbjct: 123 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPN---VVTYGTLING 179

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L +      A++ LR M+  NC P +  +++ +D L K    T A  L+   MV  G  P
Sbjct: 180 LCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFS-QMVGQGISP 238

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D  TY  +   L        V    ++M+ ++  P  +  +T +  L    +   A EI 
Sbjct: 239 DIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIV 298

Query: 384 NYILENGILPLEASANELLVG------LRNLGRLSDV---RRFAEEMLNRRILIYE-VTM 433
           + +++ G+ P   +   L+ G      +    ++ D+   + FA ++++   LI     +
Sbjct: 299 DMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKI 358

Query: 434 HKLKKAFY 441
           HK+ KA Y
Sbjct: 359 HKIDKAMY 366



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 131/304 (43%), Gaps = 10/304 (3%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR- 208
           + SI DS C   +  EA   F  M   G+  D+    SL+ A+C    +       LN+ 
Sbjct: 208 YTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNL-CEWKHVTTLLNQM 266

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V   + PD   F+ +++   KEG V EA++    M++R    P+ V+ Y T +       
Sbjct: 267 VNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGV-EPD-VVTYTTLMDGHCLQS 324

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           ++DEA+K   +M  +   P +  ++  ++   K++    A+ L++  M      PD+ TY
Sbjct: 325 EMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFE-EMCRKEWIPDTKTY 383

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N +   L    R+ +    FHEM+     P  +  +  +  L      E A+ +   I  
Sbjct: 384 NTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEA 443

Query: 389 NGILPLEASANELLVGLRNLGRLSDVR----RFAEEMLNRRILIYEVTMHKL-KKAFYNE 443
           + + P     N ++ G+   G L   R      + + L+  +  Y + +H L K+   NE
Sbjct: 444 SNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNE 503

Query: 444 SRSM 447
           +  +
Sbjct: 504 ANKL 507



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 9/153 (5%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-ENQTSRALEF 205
           L T++ + DS C     +EA+     +    +  D+   N ++  +CR  E + +R L F
Sbjct: 415 LVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDL-F 473

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
            N   K + P   ++ I++ G  K G + EANK F EM +  + +P+    Y T     +
Sbjct: 474 SNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEM-DGNDCSPDGC-TYNTIARGFL 531

Query: 266 RGKQVDEALKFL-----RVMKGENCFPTLKFFS 293
           +  +   A++ L     R    ++CF  L   S
Sbjct: 532 QNNETLRAIQLLEEMLARGFSADSCFLMLSVLS 564


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 128/294 (43%), Gaps = 7/294 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF +I  S C  G  D A+   D MS HG   D+V  +S+L  +C    +   A+E L+R
Sbjct: 393 TFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLC-DVGRVDDAVELLSR 451

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K     PD  ++  +L+G       E A +   EM+   +  P+ V  + T + +L + 
Sbjct: 452 LKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCS-DCPPDEV-TFNTVVASLCQK 509

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
             VD A++ +  M    C P +  ++  +D L   +    A++L   +    G  PD +T
Sbjct: 510 GLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSC-GCKPDIVT 568

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           +N + + L    R  + E+    M+++   P  L   T IT L        AIE    + 
Sbjct: 569 FNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMA 628

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR--ILIYEVTMHKLKKA 439
           ENG +P  ++ + ++  L   G+          M N    ++ Y   +  L KA
Sbjct: 629 ENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDLITYNTVISNLTKA 682



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 114/257 (44%), Gaps = 7/257 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++  S C  G  D A+   + MS +G   D+V  N ++  +C  E+    A+E L+ 
Sbjct: 498 TFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLC-NESCIDDAMELLSD 556

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++     PD  +F  LL+G       E+A +    M+ R    P+  L + T + +L + 
Sbjct: 557 LQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMM-RSNCPPDE-LTFNTVITSLCQK 614

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
             + +A++ L++M    C P    +S  +D L+K   +  A++L   M       PD +T
Sbjct: 615 GLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMT---NGTPDLIT 671

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +   L K  ++ E       M+ N   P      +    +   D  + A+ +   + 
Sbjct: 672 YNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQ 731

Query: 388 ENGILPLEASANELLVG 404
           + G+ P     N++L+G
Sbjct: 732 DTGLSPDTTFYNDVLLG 748



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 135/334 (40%), Gaps = 6/334 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N ++  L   GR          M   G   S+ T++ + D+ C    Y +A+   D 
Sbjct: 252 FTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDE 311

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGWEKEG 231
           M   G E D+V  N L++A+C  E     AL  L N       PD  ++  +L+      
Sbjct: 312 MRAKGCEPDIVTYNVLINAMC-NEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSE 370

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             +E  +   EM       P+ V  + T + +L +   VD A++ +  M    C   +  
Sbjct: 371 RWKEVEELLAEMTSN-NCAPDEV-TFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVT 428

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S+ LD L  +     AV+L   +  + G  PD++ Y  + + L   ++    E+   EM
Sbjct: 429 YSSILDGLCDVGRVDDAVELLSRLKSY-GCKPDTIAYTTVLKGLCSTEQWERAEELMAEM 487

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           + ++  P  +   T +  L      + AI +   + ENG  P   + N ++ GL N   +
Sbjct: 488 LCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCI 547

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            D      ++ +       VT + L K      R
Sbjct: 548 DDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDR 581



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 146/337 (43%), Gaps = 8/337 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +V  L + G  ++    V  M E G ++ + T++SI D  C  G+ D+AV     + 
Sbjct: 394 FNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLK 453

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
            +G + D +A  ++L  +C  E Q  RA E +   +     PD  +F  ++    ++G V
Sbjct: 454 SYGCKPDTIAYTTVLKGLCSTE-QWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLV 512

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A +   +M E    +P+ ++ Y   +  L     +D+A++ L  ++   C P +  F+
Sbjct: 513 DRAIRVVEQMSEN-GCSPD-IVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFN 570

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             L  L  ++    A QL   MM      PD LT+N +   L +   + +  +    M +
Sbjct: 571 TLLKGLCGVDRWEDAEQLMANMM-RSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAE 629

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           N   P     +  +  LL A + + A+E+ +  + NG  P   + N ++  L   G++ +
Sbjct: 630 NGCVPNSSTYSIVVDALLKAGKAQAALELLSG-MTNGT-PDLITYNTVISNLTKAGKMEE 687

Query: 414 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 450
                  M++  +     T   L      E  + R +
Sbjct: 688 ALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAV 724



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 121/267 (45%), Gaps = 13/267 (4%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
           C  G+  +A   F  +   G    VV  N++++  CR   +   A   +N +     PD 
Sbjct: 198 CSDGRVSDAERVFAAL---GPSATVVTYNTMVNGYCRA-GRIEDARRLINGMP--FPPDT 251

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +F  L+      G + +A   F +M+ R   +P  V+ Y   L    +     +A+  L
Sbjct: 252 FTFNPLIRALCVRGRIPDALAVFDDMLHR-GCSPS-VVTYSILLDATCKESGYRQAMALL 309

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M+ + C P +  ++  ++ +    D   A+ +    +  HG  PD++TY  + + L  
Sbjct: 310 DEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILS-NLPSHGCKPDAVTYTPVLKSLCG 368

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
           ++R  EVE+   EM  N   P  +   T +T L      + AIE+ +++ E+G +    +
Sbjct: 369 SERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVT 428

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNR 424
            + +L GL ++GR+ D    A E+L+R
Sbjct: 429 YSSILDGLCDVGRVDD----AVELLSR 451



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/359 (20%), Positives = 140/359 (38%), Gaps = 14/359 (3%)

Query: 105 AGRGQRLSPYA-WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGK 162
           +G G+   P    N+++  L  +GR     +A RV    G   ++ T+ ++ + YC AG+
Sbjct: 178 SGGGRNCPPVVPCNILIKRLCSDGRVS---DAERVFAALGPSATVVTYNTMVNGYCRAGR 234

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            ++A    + M       D    N L+ A+C +         F + + +   P   +++I
Sbjct: 235 IEDARRLINGMPF---PPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSI 291

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL+   KE    +A     EM  R +     ++ Y   +  +     VDEAL  L  +  
Sbjct: 292 LLDATCKESGYRQAMALLDEM--RAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPS 349

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
             C P    ++  L  L   ++    V+     M  +   PD +T+N I   L +   V 
Sbjct: 350 HGCKPDAVTYTPVLKSLCG-SERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVD 408

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
              +    M ++      +  ++ +  L D    + A+E+ + +   G  P   +   +L
Sbjct: 409 RAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVL 468

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES---RSMRDIFDSLERRC 458
            GL +  +         EML       EVT + +  +   +    R++R +    E  C
Sbjct: 469 KGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGC 527



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 3/131 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L K G+ E+  + +RVM  +G+     T+ S+    C     D AV     + 
Sbjct: 672 YNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQ 731

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             G+  D    N +L   CR + +T  A++ F + V     PD  ++ ILLE     G +
Sbjct: 732 DTGLSPDTTFYNDVLLGFCR-DRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLL 790

Query: 234 EEANKTFGEMV 244
           +EA +    + 
Sbjct: 791 DEAKRLLASLC 801


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 129 FEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
            ++    +  M ++GV+    T+ SI   YC +G+  EA+ +   M   GVE +VV  +S
Sbjct: 225 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSS 284

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           L++ +C+    T     F +  K+ ++PD  ++  LL+G  KEG V E+ K F  MV R 
Sbjct: 285 LMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMV-RI 343

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
              P+ ++ Y T +       ++DEA K L  M      P +  +   ++   +++    
Sbjct: 344 GVKPD-IITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDD 402

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
           A+ L+   MV  G  P+ +TYN+I + L   +R    ++ +  + K+  Q
Sbjct: 403 ALALFK-EMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQ 451



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 163/365 (44%), Gaps = 26/365 (7%)

Query: 94  SPSSAVDFFRWAGRGQ--RLSP--YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLP 148
           SP++AV  +    R    +++P  + + +++    + GR +  + A+  V+K+   +   
Sbjct: 69  SPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAI 128

Query: 149 TFASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           TF  +    C   +  +A+ +    M+  G   DV + N+LL  +C  EN++  ALE L+
Sbjct: 129 TFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLC-DENRSQEALELLH 187

Query: 208 RVKKIVD----PDGDSFAILLEGWEKEG--------NVEEANKTFGEMVERFEWNPEHVL 255
            +         PD  S+  +L G+ KEG         +++A +    MV+     P+  +
Sbjct: 188 MMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVM-PD-CM 245

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y + L       Q  EA+  L+ M+ +   P +  +S+ ++ L K   ST A +++D  
Sbjct: 246 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFD-S 304

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           M   G  PD  TY  + +   K  RV E EK F  M++   +P  +   T I     A +
Sbjct: 305 MTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGK 364

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEV 431
            + A ++   ++  G+ P   +   L+ G   + R+ D     +EM++      I+ Y +
Sbjct: 365 MDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNI 424

Query: 432 TMHKL 436
            +  L
Sbjct: 425 ILQGL 429



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 96/235 (40%), Gaps = 12/235 (5%)

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K GR  +      +M   GV   + T+ ++ D  C AGK DEA      M   GV+ D+V
Sbjct: 326 KEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIV 385

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
              +L++  CR          F   V   V P+  ++ I+L+G         A + +  +
Sbjct: 386 TYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSI 445

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI----L 299
            +        +  Y   L  L +    DEAL+  + +    C   L+  +   +I    L
Sbjct: 446 TK--SGTQLELSTYNIILHGLCKNNLTDEALRMFQNL----CLTDLQLETRTFNIMIGAL 499

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
           +K      A  L+      +G  PD  TY+++ E LI+   + E++  F  M +N
Sbjct: 500 LKCGRMDEAKDLFAAHSA-NGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEEN 553


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 6/281 (2%)

Query: 127 GRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           GR  +     R M +D    + T+ ++  + C AGK+DEA      M   G   D V  +
Sbjct: 106 GRVVEALEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFS 165

Query: 187 SLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           +L+  +C+   E Q  R LE + + + + + D     I+     K  +VE A+K  G ++
Sbjct: 166 TLIDGLCKFGSEEQAFRVLEDVIQ-RGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVI 224

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
            +  + P  VL +   +    + K +D A K L VM  + C P +  F+  +  L K N 
Sbjct: 225 AK-GFTPT-VLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANR 282

Query: 305 STHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
              A QL +  MV  G  P+ +TY+ +   L K  +V +  + F  M +    P  +   
Sbjct: 283 VGEAQQLLE-KMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHN 341

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             I  L  A   E A ++++ + E G  P   + N L+ GL
Sbjct: 342 ILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGL 382



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 121/316 (38%), Gaps = 38/316 (12%)

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           V  +V + N  L  +CR   +      F N + +I  P+  ++ IL+ G+   G+++ A 
Sbjct: 18  VGHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAI 77

Query: 238 KTFGEMVER-FEWNP--------------------EH-----------VLAYETFLITLI 265
           +   EM    FE N                     EH           V+ Y   +  L 
Sbjct: 78  QLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVMTYTALVHALC 137

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           +  + DEA   LR M  + C P    FS  +D L K      A ++ + ++       D+
Sbjct: 138 KAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDA 197

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
               +I     K   V    K    +I   + PT L     I     A + + A ++   
Sbjct: 198 AFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEV 257

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML----NRRILIYEVTMHKLKKAFY 441
           ++E G +P   +   L+ GL    R+ + ++  E+M+    +  ++ Y   ++ L K   
Sbjct: 258 MIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCK--Q 315

Query: 442 NESRSMRDIFDSLERR 457
            +     ++F  +ERR
Sbjct: 316 GQVDDAYELFQLMERR 331



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 107/224 (47%), Gaps = 7/224 (3%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR- 208
           F  + + +C A   D A    +VM   G   +V     L++ +C+  N+   A + L + 
Sbjct: 235 FNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKA-NRVGEAQQLLEKM 293

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V     P+  +++ ++ G  K+G V++A + F +++ER    P +V+ +   +  L + K
Sbjct: 294 VMGGCSPNVVTYSTVINGLCKQGQVDDAYELF-QLMERRNC-PPNVVTHNILIDGLCKAK 351

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +++EA +    M+   C P +  +++ +D L K      A QL+  +     +  +++TY
Sbjct: 352 RIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTY 411

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
           + +F       R+ +  + F  ++   + P   + AT  +++L+
Sbjct: 412 STLFHGYAALGRMADACRIFSMLVDKGFSP---DLATYTSLILE 452


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 150/329 (45%), Gaps = 9/329 (2%)

Query: 97  SAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           SA+   R    R  R +   +N ++D L K+    + ++    M   G+  ++ T++++ 
Sbjct: 133 SALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLI 192

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIV 213
             +C AG+  EA    + M +  +  +V     L+ A+C+ E +   A   L    K+ V
Sbjct: 193 YGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCK-EGKVKEAKNLLAVMTKEGV 251

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            P+  S+  L++G+   G V+ A + F  MV++   NP +V +Y   +  L + K+VDEA
Sbjct: 252 KPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQK-GVNP-NVYSYNIMIDRLCKSKRVDEA 309

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP-DSLTYNMIF 332
           +  LR +  +N  P    +S+ +D   KL   T A+ L   M  +H   P D +TY  + 
Sbjct: 310 MNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEM--YHRGQPADVVTYTSLL 367

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
           + L KN+ + +    F +M +   QP        I  L      + A +++ ++L  G  
Sbjct: 368 DALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCR 427

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEM 421
               + N ++ GL   G L +      +M
Sbjct: 428 INVWTYNVMISGLCKEGMLDEALAMKSKM 456



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 111/257 (43%), Gaps = 39/257 (15%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR-VMKEDGVLSLPTFASIFDSYCG 159
           F     +G   + Y++N+M+D L K+ R ++  N +R V+ ++ V +  T++S+ D +C 
Sbjct: 278 FHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCK 337

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G+   A+     M   G   DVV   SLL A+C+ +N       F+   ++ + P+  +
Sbjct: 338 LGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYT 397

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  L++G  K G  + A K F  ++   +    +V  Y   +  L +   +DEAL     
Sbjct: 398 YTALIDGLCKGGRHKNAQKLFQHLL--VKGCRINVWTYNVMISGLCKEGMLDEAL----A 451

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           MK +                                M  +G  PD++T+ +I   L +  
Sbjct: 452 MKSK--------------------------------MEENGCIPDAVTFEIIIRSLFEKD 479

Query: 340 RVHEVEKFFHEMIKNEW 356
           +  + EK  HEMI  + 
Sbjct: 480 QNDKAEKLLHEMIAKDL 496



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 120/279 (43%), Gaps = 7/279 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  I  S      Y  A+  F  M + G+E D+  +N L++  C    Q + +   L ++
Sbjct: 13  FNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHL-GQMTFSFTVLGKI 71

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRG 267
            K+   P+  +   L++G   +G V+++     ++V + F+ +    ++Y T L  L + 
Sbjct: 72  LKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQ---VSYATLLNGLCKI 128

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +   ALK LR+++  +  P +  ++  +D L K      A  L+  M    G FP+ +T
Sbjct: 129 GETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDA-RGIFPNVIT 187

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y+ +        ++ E     +EMI     P        +  L    + + A  +   + 
Sbjct: 188 YSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMT 247

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           + G+ P   S N L+ G   +G + + ++    M+ + +
Sbjct: 248 KEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGV 286


>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 482

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 138/327 (42%), Gaps = 7/327 (2%)

Query: 59  ILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--W 116
           IL   +S  +  +L    I  TP LV+ +L+  ++    A+ FF+           A  +
Sbjct: 36  ILNSTNSQTLAESLHSPSIQWTPQLVNTILKRLWNHGPKALHFFKILSHHPSYCHQASSF 95

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSM 175
           +  +D+  +   F  +W  V  M+   +   P TFA I + Y   GK   AV  F  M  
Sbjct: 96  DHAIDICARLRDFRTLWFLVSRMRSCRLGPSPRTFAIIAERYAAMGKPHRAVTVFMSMHE 155

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           +G  QD+ + N++L  +C+ + +   A      +K     D  S+ I++ GW       +
Sbjct: 156 YGCFQDLSSFNTILDVLCKSK-RVEMAYNLFKALKGKFKADCVSYNIIVNGWCLIKRTPK 214

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A +   EMVER    P ++  Y   L    R  Q +EA  F   MK   C   +  +++ 
Sbjct: 215 ALEMLKEMVER-GLTP-NLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSV 272

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           +  L  + +   A  +++  MV  G  P   T+N + + L K   V      F EM+K  
Sbjct: 273 IHGLGVVGEIKRARNVFN-QMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRG 331

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEI 382
           + P  +     I  L    E + A+E+
Sbjct: 332 YVPNSITYNLVIRGLCHVGEMQRAMEL 358



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 139/326 (42%), Gaps = 43/326 (13%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++N ++DVL K+ R E  +N  + +K                    GK+           
Sbjct: 164 SFNTILDVLCKSKRVEMAYNLFKALK--------------------GKF----------- 192

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
               + D V+ N +++  C  + +T +ALE L   V++ + P+  ++ I+L G+ + G  
Sbjct: 193 ----KADCVSYNIIVNGWCLIK-RTPKALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQT 247

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA   F EM +R       V+ Y + +  L    ++  A      M  +   P++  F+
Sbjct: 248 NEAWGFFLEMKKR--KCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFN 305

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             + IL K +   +A+ +++  MV  G  P+S+TYN++   L     +    +    M  
Sbjct: 306 ALIQILCKKDSVENAILIFE-EMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMED 364

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL---RNLGR 410
           ++ +P        I    DA E E  ++++  +     LP   + N L+  +   +N   
Sbjct: 365 DDCEPNVQTYNILIRYFCDAGEIEKGLDLFQKMGNGDCLPNLDTYNILINSMFVRKNSDN 424

Query: 411 LSDVRRFAEEMLNRRILIYEVTMHKL 436
           L    +   EM++R  L  ++T +++
Sbjct: 425 LLVAGKLLVEMVDRGFLPRKLTFNRV 450



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 104/232 (44%), Gaps = 18/232 (7%)

Query: 201 RALEFL-NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
           R L FL +R++   + P   +FAI+ E +   G    A   F  M E   +  + + ++ 
Sbjct: 109 RTLWFLVSRMRSCRLGPSPRTFAIIAERYAAMGKPHRAVTVFMSMHEYGCF--QDLSSFN 166

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND------STHAVQLW 312
           T L  L + K+V+ A    + +KG       KF ++ +   + +N       +  A+++ 
Sbjct: 167 TILDVLCKSKRVEMAYNLFKALKG-------KFKADCVSYNIIVNGWCLIKRTPKALEML 219

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
              MV  G  P+  TYN++     +  + +E   FF EM K +     +   + I  L  
Sbjct: 220 K-EMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHGLGV 278

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             E + A  ++N ++++G+LP  A+ N L+  L     + +     EEM+ R
Sbjct: 279 VGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKR 330


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 112/264 (42%), Gaps = 6/264 (2%)

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G E +V   N LL  + R+      +  F   + K   PD  +FAILL G  +   +E+A
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            K  G M E     P+  + Y   +    + K   +A KFL  M   +C PT+  ++N +
Sbjct: 62  RKLLGRMKE-MGCVPDDAI-YNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIV 119

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
           D L K   +  AV+L D M    G  P+  TYN+I E L + +++ E +K   EM    +
Sbjct: 120 DGLCKAERTRDAVKLLDEMRD-KGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGY 178

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
            P  +   + I  L   D  +   E   ++    + P   S   ++ GL   G L    R
Sbjct: 179 FPDVVTYNSFIKGLCKCDRVD---EARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASR 235

Query: 417 FAEEMLNRRILIYEVTMHKLKKAF 440
             + M NR      VT   L   F
Sbjct: 236 MLDHMSNRGCTPDVVTYSSLIDGF 259



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 120/257 (46%), Gaps = 11/257 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  +VD L K  R       +  M++ G   ++ T+  I +  C   K DEA    + M+
Sbjct: 115 YTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMA 174

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           + G   DVV  NS +  +C+ + +   A +FL R+   V PD  S+  ++ G  K G+++
Sbjct: 175 VRGYFPDVVTYNSFIKGLCKCD-RVDEARKFLARMP--VTPDVVSYTTVINGLCKSGDLD 231

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A++    M  R    P+ V+ Y + +    +G +V+ A+  L  M    C P +  +++
Sbjct: 232 SASRMLDHMSNR-GCTPD-VVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNS 289

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            L  L +L     A  +  + M   G  PD ++YN   + L K +RV + +  F  M++ 
Sbjct: 290 LLGALHRLGHIGKAEDML-VEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVER 348

Query: 355 EWQPTPLNCATAITMLL 371
              P     A++ +ML+
Sbjct: 349 GCTPN----ASSYSMLI 361



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 135/302 (44%), Gaps = 14/302 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++  +++ L K+G  +     +  M   G    + T++S+ D +C  G+ + A+   D M
Sbjct: 216 SYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSM 275

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G   ++VA NSLL A+ R      +A + L  + ++   PD  S+   ++G  K   
Sbjct: 276 LKLGCRPNMVAYNSLLGALHRL-GHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAER 334

Query: 233 VEEANKTFGEMVER--------FEWNPEHVLAYETFLITLIRGKQVDEALK-FLRVMKGE 283
           V++A   F  MVER        +      +L Y   L  L +G + DEA   F +V+  +
Sbjct: 335 VKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEK 394

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
            C P + F++  LD   K      A+Q+   M+       + +T+N++   L  + R+ +
Sbjct: 395 ICEPDVFFYNVMLDSHCKRRQIDKALQIHKQML--EKNCCNVVTWNILVHGLCVDDRLSD 452

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
            E     M+   + P  +   T +  +    +   A+E++   ++ G +P   + + L+ 
Sbjct: 453 AETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALIT 512

Query: 404 GL 405
           GL
Sbjct: 513 GL 514



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 142/324 (43%), Gaps = 21/324 (6%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++    K   F Q +  +  M ++  L ++ T+ +I D  C A +  +AV   D M 
Sbjct: 80  YNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMR 139

Query: 175 MHGVEQDVVAVNSLLSAIC--RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
             G   ++   N ++  +C  R+ ++  + LE +    +   PD  ++   ++G  K   
Sbjct: 140 DKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEM--AVRGYFPDVVTYNSFIKGLCKCDR 197

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V+EA K     + R    P+ V++Y T +  L +   +D A + L  M    C P +  +
Sbjct: 198 VDEARK----FLARMPVTPD-VVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTY 252

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           S+ +D   K  +   A+ L D M+   G  P+ + YN +   L +   + + E    EM 
Sbjct: 253 SSLIDGFCKGGEVERAMGLLDSMLKL-GCRPNMVAYNSLLGALHRLGHIGKAEDMLVEME 311

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV--------- 403
           +  + P  ++    I  L  A+  + A  +++ ++E G  P  +S + L+V         
Sbjct: 312 RRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLL 371

Query: 404 -GLRNLGRLSDVRRFAEEMLNRRI 426
            GL   GR  +      ++L+ +I
Sbjct: 372 DGLCKGGRFDEACALFSKVLDEKI 395



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 126/316 (39%), Gaps = 15/316 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TFA +    C + + ++A      M   G   D    N+L+S   + ++   +A +FL  
Sbjct: 44  TFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKD-FGQAFKFLAE 102

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            VK    P   ++  +++G  K     +A K   EM  R +    ++  Y   +  L   
Sbjct: 103 MVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEM--RDKGCSPNIYTYNVIVEGLCEE 160

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           +++DEA K L  M     FP +  +++ +  L K +    A +    M V     PD ++
Sbjct: 161 RKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPV----TPDVVS 216

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y  +   L K+  +    +    M      P  +  ++ I       E E A+ + + +L
Sbjct: 217 YTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSML 276

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNE 443
           + G  P   + N LL  L  LG +        EM  R     ++ Y   +  L KA    
Sbjct: 277 KLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKA--ER 334

Query: 444 SRSMRDIFDSL-ERRC 458
            +  + +FD + ER C
Sbjct: 335 VKKAKAVFDRMVERGC 350



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 3/140 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           + +N+M+D   K  + ++     + M E    ++ T+  +    C   +  +A      M
Sbjct: 401 FFYNVMLDSHCKRRQIDKALQIHKQMLEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTM 460

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGN 232
              G   D V   +L+ A+C+   +++ ALE F   VK    PD  +++ L+ G   E  
Sbjct: 461 VDEGFIPDFVTYGTLVDAMCKC-GKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENM 519

Query: 233 VEEANKTFGEMVERFEWNPE 252
            EEA   F ++VER  W P+
Sbjct: 520 AEEAYLLFTKLVER-RWVPD 538


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 135/297 (45%), Gaps = 4/297 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + + Y +N ++ +L K+G+ +     +R M   G++     + ++ D +C  G    
Sbjct: 39  KGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQA 98

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   FD M    +  D +A  +++  +CR          F     + V+PD  ++  L++
Sbjct: 99  AYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLID 158

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ K G +E+A     +MV+     P +V+ Y      L +  QVD A + L  M G+  
Sbjct: 159 GYCKSGEMEKAFSLHNQMVQS-GLTP-NVVTYTALADGLCKLGQVDTANELLHEMCGKGL 216

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
              +  +++ ++ L K  +   AV+L + M V  G +PD++T+  + +   K   + +  
Sbjct: 217 QLNICTYNSLVNGLCKSGNIRQAVKLMEEMEV-AGMYPDTITFTTLMDAYCKTGEMVKAH 275

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +   EM+    QPT +     +     +   E    +  ++LE GI+P   + N L+
Sbjct: 276 ELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLM 332



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 120/292 (41%), Gaps = 3/292 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +++++ + YC  G+  + +     M M G++ ++   NS++  +C+              
Sbjct: 12  SYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREM 71

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + + + PD   +  L++G+ K GN++ A K F EM E+    P+ + AY   +  L R  
Sbjct: 72  INQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEM-EKQRIVPDFI-AYTAVICGLCRCG 129

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           ++ EA K    M      P    ++  +D   K  +   A  L +  MV  G  P+ +TY
Sbjct: 130 KMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHN-QMVQSGLTPNVVTY 188

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
             + + L K  +V    +  HEM     Q       + +  L  +     A+++   +  
Sbjct: 189 TALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEV 248

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
            G+ P   +   L+      G +        EML+R +    +T + L   F
Sbjct: 249 AGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGF 300



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 42/181 (23%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL----PTFASIFDSYCGA 160
            G+G +L+   +N +V+ L K+G   Q   AV++M+E  V  +     TF ++ D+YC  
Sbjct: 212 CGKGLQLNICTYNSLVNGLCKSGNIRQ---AVKLMEEMEVAGMYPDTITFTTLMDAYCKT 268

Query: 161 GKYDEA---------------VMSFDVM----SMHGVEQD----------------VVAV 185
           G+  +A               V++F+V+     M G+ +D                    
Sbjct: 269 GEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTY 328

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           NSL+   C + N       +     + V PD +++ IL++G  K  N++EA     EM E
Sbjct: 329 NSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAE 388

Query: 246 R 246
           +
Sbjct: 389 K 389



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 36/177 (20%), Positives = 73/177 (41%), Gaps = 1/177 (0%)

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
           +F  +   V++Y T +     G ++ + LK ++ M+ +   P L  +++ + +L K    
Sbjct: 2   KFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKV 61

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
             A ++    M+  G  PD++ Y  + +   K   +    K F EM K    P  +    
Sbjct: 62  DDAERVLR-EMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
            I  L    +   A +++N +   G+ P E +   L+ G    G +        +M+
Sbjct: 121 VICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMV 177


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 141/313 (45%), Gaps = 12/313 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y++N ++  LGK        N    +   GV  SL TF ++ +  C  GK  EAV+ F+ 
Sbjct: 163 YSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNK 222

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           +    +  D     SL+   CR   +  +A E  +R VK   +P+  +++ L+ G   EG
Sbjct: 223 IFQFDLCPDAFTYTSLILGHCRNR-KLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEG 281

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            + EA     EM E+    P  V  Y   + +L    +VD+A+  +R M  + C P+++ 
Sbjct: 282 RIGEAMDMLEEMTEK-GIEPT-VYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQT 339

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +  L +      A+ ++  M+   G  P+++TYN +   L    R     K F  M
Sbjct: 340 YTAIISGLFRAGKMELAIGMYHKMLK-EGLVPNTVTYNALINELCTEGRFGIALKIFDWM 398

Query: 352 IKNEWQPTPLNCAT---AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
              E   T  N  T    I  L   D+ E A+ ++N +L++G  P   + N L+V     
Sbjct: 399 ---EGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKR 455

Query: 409 GRLSDVRRFAEEM 421
           G L++  RF   M
Sbjct: 456 GYLNNATRFLYMM 468



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 145/366 (39%), Gaps = 39/366 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   + Y + + +  L   GR +   N VR M + G   S+ T+ +I      AGK + 
Sbjct: 296 KGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMEL 355

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A+  +  M   G+  + V  N+L++ +C  E +   AL+  + ++      +  ++  ++
Sbjct: 356 AIGMYHKMLKEGLVPNTVTYNALINELC-TEGRFGIALKIFDWMEGHGTLANAQTYNQII 414

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G     ++E+A   F +M++  +     V+ Y T ++  ++   ++ A +FL +MK  N
Sbjct: 415 KGLFGMDDIEKAMVVFNKMLK--DGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESN 472

Query: 285 CFP--------------------TLKFFSNALDILVKLNDSTHAVQL--------WDIMM 316
           C P                       FF   L   +  N  T+   +         D+ +
Sbjct: 473 CEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVAL 532

Query: 317 VF------HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
                   +G      TYN I   L K  R  E EKF  +M +   QP  +   + I  L
Sbjct: 533 SLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGL 592

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
                  +A +I++ + +   LP   +   L+ GL   G++    R  E      I  Y 
Sbjct: 593 CKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTENGCEPTIDTYS 652

Query: 431 VTMHKL 436
             +  L
Sbjct: 653 TLVSGL 658



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/348 (19%), Positives = 136/348 (39%), Gaps = 16/348 (4%)

Query: 97  SAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA--VRVMKEDGVLSLPTFASIF 154
           +A+ FF W  + +    +     V +L +  + + +  A  VR++      +      + 
Sbjct: 86  TALQFFYWISK-RHFYKHDMGCFVSMLNRLVKDKILAPADHVRILMIKACRNEDELKRVT 144

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           D   G    D  +  F + S           N+LL  + + +  TS    +       V 
Sbjct: 145 DFLHGISSSDSGLFGFTLYSF----------NTLLLQLGKFDMVTSAQNVYAQIFSSGVK 194

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P   +F  ++    K+G V+EA   F ++ + F+  P+    Y + ++   R +++D+A 
Sbjct: 195 PSLLTFNTMINILCKKGKVQEAVLVFNKIFQ-FDLCPD-AFTYTSLILGHCRNRKLDKAF 252

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           +    M  + C P    +S  ++ L        A+ + +  M   G  P   TY +    
Sbjct: 253 EVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLE-EMTEKGIEPTVYTYTVPISS 311

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L    RV +       M K    P+       I+ L  A + E+AI +++ +L+ G++P 
Sbjct: 312 LCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPN 371

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
             + N L+  L   GR     +  + M     L    T +++ K  + 
Sbjct: 372 TVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFG 419



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 111/278 (39%), Gaps = 11/278 (3%)

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKK----IVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           V  L+   CR E++  R  +FL+ +      +      SF  LL    K   V  A   +
Sbjct: 126 VRILMIKACRNEDELKRVTDFLHGISSSDSGLFGFTLYSFNTLLLQLGKFDMVTSAQNVY 185

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEA-LKFLRVMKGENCFPTLKFFSNALDIL 299
            ++          +L + T +  L +  +V EA L F ++ + + C P    +++ +   
Sbjct: 186 AQIFS--SGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLC-PDAFTYTSLILGH 242

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            +      A +++D  MV  G  P+S+TY+ +   L    R+ E      EM +   +PT
Sbjct: 243 CRNRKLDKAFEVFD-RMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPT 301

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
                  I+ L D    + AI +   + + G  P   +   ++ GL   G++        
Sbjct: 302 VYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYH 361

Query: 420 EMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLE 455
           +ML   ++   VT + L      E R      IFD +E
Sbjct: 362 KMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWME 399



 Score = 45.1 bits (105), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 46/180 (25%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++ +V  L + GR  +    V  MKE G+  S+  + S+  ++C + K D A+  F++M
Sbjct: 650 TYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLM 709

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS----FAILLEGWEK 229
           ++ G +  +     L+ A+C      SRA E LN  + ++    +S    + +L++G  +
Sbjct: 710 AVKGFQPHLFIYKVLICALC----GVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQ 765

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           EG+                                      D  +KFL +M+  NC P+L
Sbjct: 766 EGD-------------------------------------SDLCMKFLYLMESRNCTPSL 788


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 150/311 (48%), Gaps = 11/311 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++   K  + ++    + R++ E+ V  + T+ S+ +  C  G+ DEA M   ++ 
Sbjct: 83  YNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARM---LIV 139

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
             G   +V+  ++L+S +CR+    S AL+    V K+  +P+  ++ IL++G  KE  V
Sbjct: 140 DKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRV 199

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA + F  +V +    P+ +  Y  F+  L +  +V++AL  L+ M  + C P +   +
Sbjct: 200 NEAFELFSGLV-KHGLEPDAI-TYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHN 257

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             ++ L K      A  L   M    G  P+++++N +     +  +  +    F EM+K
Sbjct: 258 AVINGLCKEKRVDEAEVLLSGMEA-KGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLK 316

Query: 354 NEWQPTPLNCATAITMLLDA-DEPEI--AIEIWNYILENGILPLEASANELLVGLRNLGR 410
              +PT +     +  L  A  E  I  AI +++ ++E G +P   + + L+ GL   G+
Sbjct: 317 RGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGK 376

Query: 411 LSDVRRFAEEM 421
           L D RR    M
Sbjct: 377 LDDARRLLGAM 387



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 145/331 (43%), Gaps = 14/331 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L   GR         R++K      + T+ ++   +C  G+ DEA+  FD   
Sbjct: 13  YNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAV 72

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             G   DVV  N+L++  C+ + +   A   L R V + + PD  ++  L+ G  K G V
Sbjct: 73  KRGFVPDVVTYNALINGFCKAD-KLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRV 131

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRG-KQVDEALKFLRVMKGENCFPTLKFF 292
           +EA      ++    ++P +V+ Y T +  L R  + V EALK    +  +   P +  +
Sbjct: 132 DEARM----LIVDKGFSP-NVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTY 186

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +D L+K +    A +L+   +V HG  PD++TY +  + L K  RV +      +M 
Sbjct: 187 NILIDGLLKEDRVNEAFELFS-GLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMD 245

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +    P  ++    I  L      + A  + + +   G  P   S N L+ G    G+  
Sbjct: 246 EKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWK 305

Query: 413 DVRRFAEEMLNR----RILIYEVTMHKLKKA 439
                 +EML R     ++ Y + +  L KA
Sbjct: 306 KAMTTFKEMLKRGVKPTVVTYNILVDGLCKA 336



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 124/259 (47%), Gaps = 9/259 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLN 207
           T+ ++    C  G+  +A   ++ M   G   DVV  N+LL   C+   +   AL+ F  
Sbjct: 12  TYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKV-GELDEALKIFDG 70

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            VK+   PD  ++  L+ G+ K   ++EA +    MV   E     V+ Y + +  L + 
Sbjct: 71  AVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVS--ENLVPDVVTYNSLVNGLCKN 128

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVK-LNDSTHAVQLWDIMMVFHGAFPDSL 326
            +VDEA + L V KG +  P +  +S  +  L + L   + A++L+  ++   G  P+  
Sbjct: 129 GRVDEA-RMLIVDKGFS--PNVITYSTLISGLCRELRGVSEALKLFGSVLK-QGYEPEVP 184

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           TYN++ + L+K  RV+E  + F  ++K+  +P  +     I  L  A   E A+ +   +
Sbjct: 185 TYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDM 244

Query: 387 LENGILPLEASANELLVGL 405
            E G +P   S N ++ GL
Sbjct: 245 DEKGCVPDVVSHNAVINGL 263



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 116/250 (46%), Gaps = 7/250 (2%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M  HG   + +  N+LLS +C     +     +   +K    PD  ++  LL G+ K G 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA K F   V+R  + P+ V+ Y   +    +  ++DEA + L+ M  EN  P +  +
Sbjct: 61  LDEALKIFDGAVKR-GFVPD-VVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTY 118

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR-VHEVEKFFHEM 351
           ++ ++ L K       V    +++V  G  P+ +TY+ +   L +  R V E  K F  +
Sbjct: 119 NSLVNGLCK----NGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSV 174

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +K  ++P        I  LL  D    A E+++ ++++G+ P   +    + GL   GR+
Sbjct: 175 LKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRV 234

Query: 412 SDVRRFAEEM 421
            D     ++M
Sbjct: 235 EDALLMLKDM 244



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 112/257 (43%), Gaps = 7/257 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++D L K  R  + +     + + G+     T+    D  C AG+ ++A++    M 
Sbjct: 186 YNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMD 245

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   DVV+ N++++ +C+++      +       K   P+  SF  L+ G  + G  +
Sbjct: 246 EKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWK 305

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTLKF 291
           +A  TF EM++R       V+ Y   +  L + +Q   + EA+     M  +   P +  
Sbjct: 306 KAMTTFKEMLKR--GVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVT 363

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S  +D L K      A +L   M    G  P+  TYN +   L   ++V E  + F  M
Sbjct: 364 YSALIDGLGKAGKLDDARRLLGAMEA-KGCIPNVYTYNSLISGLCGLEKVDEALELFVAM 422

Query: 352 IKNEWQPTPLNCATAIT 368
           ++    P  +   T I+
Sbjct: 423 VEKGCVPDTITYGTIIS 439



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 139/320 (43%), Gaps = 50/320 (15%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYCGAGK-YDEAVMSFDV 172
           +N +V+ L KNGR ++     R++  D   S  + T++++    C   +   EA+  F  
Sbjct: 118 YNSLVNGLCKNGRVDE----ARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGS 173

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +   G E +V   N L+  + + E++ + A E F   VK  ++PD  ++ + ++G  K G
Sbjct: 174 VLKQGYEPEVPTYNILIDGLLK-EDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAG 232

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP---- 287
            VE+A     +M E+    P+ V+++   +  L + K+VDEA   L  M+ + C P    
Sbjct: 233 RVEDALLMLKDMDEK-GCVPD-VVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAIS 290

Query: 288 -------------------------------TLKFFSNALDILVKLNDSTH---AVQLWD 313
                                          T+  ++  +D L K         A+ L+D
Sbjct: 291 FNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFD 350

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
             M+  G  PD +TY+ + + L K  ++ +  +    M      P      + I+ L   
Sbjct: 351 -AMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGL 409

Query: 374 DEPEIAIEIWNYILENGILP 393
           ++ + A+E++  ++E G +P
Sbjct: 410 EKVDEALELFVAMVEKGCVP 429



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 58/127 (45%)

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
           HG +P+ +TYN +   L    R+ + +  +  MIK  + P  +   T +       E + 
Sbjct: 4   HGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDE 63

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
           A++I++  ++ G +P   + N L+ G     +L + +R  + M++  ++   VT + L  
Sbjct: 64  ALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVN 123

Query: 439 AFYNESR 445
                 R
Sbjct: 124 GLCKNGR 130



 Score = 39.7 bits (91), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G+      ++ ++D LGK G+ +     +  M+  G + ++ T+ S+    CG  K DE
Sbjct: 355 KGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDE 414

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSA 191
           A+  F  M   G   D +   +++SA
Sbjct: 415 ALELFVAMVEKGCVPDTITYGTIISA 440


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 150/330 (45%), Gaps = 11/330 (3%)

Query: 100 DFFRWAGRGQRLS---PY-AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIF 154
           D FR  G  + L    P+ A+ +++  L +  + E+    +R M++ G  +S+P F ++ 
Sbjct: 159 DAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLV 218

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IV 213
            +    G+ + A+   D +    +E D+V  N  +    +       A +F + +K   +
Sbjct: 219 RALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKA-GSVDMAWKFFHELKAHGL 277

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  S+  ++    K G + EA + FG+M    E +     AY T ++     ++ D+A
Sbjct: 278 RPDDVSYTSMVWVLCKAGRLGEAEELFGQM--EAERDVPCAYAYNTMIMGYGSAERFDDA 335

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
            K L  ++   C P++  F++ L  L K      A+ L+D+M     A P+  TYN+I +
Sbjct: 336 YKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMK--KDAKPNISTYNIIID 393

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L    RV+E  K   EM      P  L+    +  L  A++ E A  I+    E G  P
Sbjct: 394 MLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNP 453

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLN 423
              +   L+ GL   G++ D  R  E+ML+
Sbjct: 454 NSVTYCSLIDGLGKKGKIDDAYRLFEKMLD 483



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/344 (20%), Positives = 148/344 (43%), Gaps = 5/344 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   RG   S  ++N ++  LGK  + ++      VMK+D   ++ T+  I D  C AG+
Sbjct: 341 RLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNISTYNIIIDMLCMAGR 400

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            +EA    D M + G+  ++++VN ++  +C+          F +  ++  +P+  ++  
Sbjct: 401 VNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCS 460

Query: 223 LLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           L++G  K+G +++A + F +M++   + NP   + Y + +       + ++  K  + M 
Sbjct: 461 LIDGLGKKGKIDDAYRLFEKMLDAGHDANP---IIYTSLIRNFFMHGRKEDGHKIYKEMI 517

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
                P L   +  +D + K  +      +++ M  F G  PD  +Y+++   L K  + 
Sbjct: 518 RRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSF-GFLPDVRSYSILIHGLTKAGQA 576

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E    F  M +  +          +  L  + + + A E+   +    + P  A+   +
Sbjct: 577 RETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSI 636

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           + GL  + RL +     EE  ++ I +  +    L   F    R
Sbjct: 637 VDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGR 680



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 134/292 (45%), Gaps = 9/292 (3%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+H + +      +S + F   + +G  L   A+N +VD L K+G+ ++ +  +  MK  
Sbjct: 566 LIHGLTKAGQARETSNI-FQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVK 624

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
            V  ++ T+ SI D      + DEA M F+     G+E +V+  +SL+    +       
Sbjct: 625 HVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEA 684

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
            L     +KK + P+  ++  L++   K   ++EA   F  M E  + +P +   Y   +
Sbjct: 685 YLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKE-MKCSP-NTYTYSILI 742

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             L R ++ ++A  F + M+ +   P +  ++  +  L K+ + T A  L++     +G 
Sbjct: 743 NGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKT-NGG 801

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
            PDS ++N + E +    R  E  + F E      +   LN  T I+ LLDA
Sbjct: 802 IPDSASFNALIEGMSNANRPMEAYQVFEE---TRLRGCRLNVKTCIS-LLDA 849



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/378 (19%), Positives = 151/378 (39%), Gaps = 41/378 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDE 165
           RG   +   +  ++D LGK G+ +  +     M + G  + P  + S+  ++   G+ ++
Sbjct: 449 RGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKED 508

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILL 224
               +  M   G   D+  +N+ +  + +  E +  RA+ F +       PD  S++IL+
Sbjct: 509 GHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAI-FEDMKSFGFLPDVRSYSILI 567

Query: 225 EGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
            G  K G   E +  F  M ++ F  +     AY   +  L +  +VD+A + L  MK +
Sbjct: 568 HGLTKAGQARETSNIFQAMSQQGFALDAR---AYNAVVDGLCKSGKVDKAYEVLEEMKVK 624

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWD------------------------------ 313
           +  PT+  + + +D L K++    A  L++                              
Sbjct: 625 HVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEA 684

Query: 314 --IM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
             I+  M+  G  P+  T+N + + L+K + + E    F  M + +  P     +  I  
Sbjct: 685 YLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILING 744

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
           L    +   A   W  + + G++P   +   ++ GL  +G ++D     E       +  
Sbjct: 745 LCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPD 804

Query: 430 EVTMHKLKKAFYNESRSM 447
             + + L +   N +R M
Sbjct: 805 SASFNALIEGMSNANRPM 822



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 102/237 (43%), Gaps = 12/237 (5%)

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           A L+    +   +E+A +  G M    ++ P    AY   +  L   +Q + AL+ LR M
Sbjct: 145 AALVATLVRSRRLEDAFRVIGAM-RHLKFRPPFS-AYTVLIGALAEARQPERALELLRQM 202

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF--PDSLTYNMIFECLIKN 338
           +      ++  F+  +  L +      A+ L D +    G+   PD + YN+  +C  K 
Sbjct: 203 QDVGYEVSVPLFTTLVRALAREGQMEPALALVDEV---KGSCLEPDIVLYNVCIDCFGKA 259

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
             V    KFFHE+  +  +P  ++  + + +L  A     A E++  +     +P   + 
Sbjct: 260 GSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAY 319

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL-----KKAFYNESRSMRDI 450
           N +++G  +  R  D  +  E +  R  +   V+ + +     KK   +E+ ++ D+
Sbjct: 320 NTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDV 376


>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 142/301 (47%), Gaps = 15/301 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRV---MKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           ++++ +    GR  + ++++RV   MK+ D   S   + ++        + + A   +  
Sbjct: 87  DILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKN 146

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M   G+   V ++N L+ A+CR +      L+  + + K+  DPD  ++  L+ G  + G
Sbjct: 147 MREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFG 206

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++EA K F EMVE+ +  P  V+ Y + +  L   K VDEA++++  MKG+   P +  
Sbjct: 207 RIDEAKKLFTEMVEK-DCAPT-VVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFT 264

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S+ +D L K   S  A++L+++MM   G  P+ +TY  +   L K +++ E  +    M
Sbjct: 265 YSSLMDGLCKDGRSLQAMELFEMMMA-RGCRPNMVTYTTLITGLCKEQKIQEAVELLDRM 323

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE-------ASANELLVG 404
                +P        I+      +   A    + ++  GI P          ++NE++ G
Sbjct: 324 NLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRG 383

Query: 405 L 405
           L
Sbjct: 384 L 384



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 110/283 (38%), Gaps = 50/283 (17%)

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           D+++   +E  VV+ + LLS ICR   +  R  + L    K+ D                
Sbjct: 72  DIVARMKIENCVVSEDILLS-ICRGYGRVHRPFDSLRVFHKMKD---------------- 114

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
                           F+ +P    AY T L  L+   Q++ A KF + M+     PT+ 
Sbjct: 115 ----------------FDCDPSQK-AYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVA 157

Query: 291 FFSNALDILVKL---NDSTHAVQLWDIMMVFH-----GAFPDSLTYNMIFECLIKNKRVH 342
               +L++L+K    ND T    L     +FH     G  PDS TY  +   L +  R+ 
Sbjct: 158 ----SLNVLIKALCRNDGTVDAGL----KIFHEMPKRGCDPDSYTYGTLISGLCRFGRID 209

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E +K F EM++ +  PT +   + I  L  +   + A+     +   GI P   + + L+
Sbjct: 210 EAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLM 269

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            GL   GR        E M+ R      VT   L      E +
Sbjct: 270 DGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQK 312



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 9/216 (4%)

Query: 252 EHVLAYETFLITLIRG-KQVDEALKFLRV---MKGENCFPTLKFFSNALDILVKLNDSTH 307
           E+ +  E  L+++ RG  +V      LRV   MK  +C P+ K +   L ILV+ N    
Sbjct: 80  ENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNL 139

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKN-KRVHEVEKFFHEMIKNEWQPTPLNCATA 366
           A + +  M    G  P   + N++ + L +N   V    K FHEM K    P      T 
Sbjct: 140 AFKFYKNMREI-GLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTL 198

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           I+ L      + A +++  ++E    P   +   L+ GL     + +  R+ EEM  + I
Sbjct: 199 ISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGI 258

Query: 427 LIYEVTMHKLKKAFYNESRSMR--DIFD-SLERRCK 459
                T   L      + RS++  ++F+  + R C+
Sbjct: 259 EPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCR 294



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 3/138 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCG 159
           F     RG     Y +  ++  L + GR ++       M E D   ++ T+ S+ +  CG
Sbjct: 180 FHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCG 239

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGD 218
           +   DEA+   + M   G+E +V   +SL+  +C+ + ++ +A+E F   + +   P+  
Sbjct: 240 SKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCK-DGRSLQAMELFEMMMARGCRPNMV 298

Query: 219 SFAILLEGWEKEGNVEEA 236
           ++  L+ G  KE  ++EA
Sbjct: 299 TYTTLITGLCKEQKIQEA 316


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 155/336 (46%), Gaps = 13/336 (3%)

Query: 83  LVHEVLQLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK- 140
           L+H +    ++  S AV    R   +G +     + ++V+ L K G  +  +  +  M+ 
Sbjct: 192 LIHGLFL--HNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQ 249

Query: 141 ---EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
              E GVL    + +I D  C     D+A+  F  M   G+  +VV  +SL+S +C    
Sbjct: 250 GKLEPGVL---IYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGR 306

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
            +  +    + +++ ++PD  +F+ L++ + KEG + EA K + EMV+R   +P  ++ Y
Sbjct: 307 WSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR-SIDPS-IVTY 364

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
            + +       ++DEA +    M  ++CFP +  +S  +    K       ++L+  M  
Sbjct: 365 SSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQ 424

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
             G   +++TY  + + L +       ++ F EM+ +   P  +   T +  L    + E
Sbjct: 425 -RGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLE 483

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
            A+ ++ Y+  + + P   + N ++ G+   G++ D
Sbjct: 484 KAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVED 519



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 152/331 (45%), Gaps = 6/331 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y ++++++   +  +       + ++MK     ++ T +S+ + YC + +  EAV   D 
Sbjct: 117 YTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 176

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M + G + + V  N+L+  +    N+ S A+  ++R V K   PD  ++ +++ G  K G
Sbjct: 177 MFVTGYQPNTVTFNTLIHGLFLH-NKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRG 235

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           + + A     +M E+ +  P  VL Y T +  L + K +D+AL   + M+ +   P +  
Sbjct: 236 DTDLAFILLNKM-EQGKLEP-GVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVT 293

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S+ +  L      + A +L   M +     PD  T++ + +  +K  ++ E EK + EM
Sbjct: 294 YSSLISCLCNYGRWSDASRLLSDM-IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM 352

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +K    P+ +  ++ I      D  + A +++ +++     P   S + L+ G     R+
Sbjct: 353 VKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRV 412

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
            +      EM  R ++   VT   L +  + 
Sbjct: 413 DEGMELFREMSQRGLVGNTVTYTTLIQGLFQ 443



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 136/309 (44%), Gaps = 9/309 (2%)

Query: 98  AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFD 155
           A++ F+    +G R +   ++ ++  L   GR+      +  M E  +   + TF+++ D
Sbjct: 275 ALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALID 334

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIV 213
           ++   GK  EA   +D M    ++  +V  +SL++  C  +  ++  +  EF+  V K  
Sbjct: 335 AFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM--VSKHC 392

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  S++ L++G+ K   V+E  + F EM +R      + + Y T +  L +    D A
Sbjct: 393 FPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVG--NTVTYTTLIQGLFQAGDCDMA 450

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
            +  + M  +   P +  ++  LD L K      A+ +++ +       P   TYN++ E
Sbjct: 451 QEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR-SKMEPTIYTYNIMIE 509

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            + K  +V +    F  +     +P  +   T I+        E A  ++  + E+G LP
Sbjct: 510 GMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 569

Query: 394 LEASANELL 402
                N L+
Sbjct: 570 NSGCYNTLI 578



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/331 (19%), Positives = 142/331 (42%), Gaps = 23/331 (6%)

Query: 96  SSAVDFFRWAGRGQRLSP----------YAWNLMVDVLGKNGRF---EQMWNAVRVMKED 142
           S   ++ RW+   + LS           + ++ ++D   K G+    E++++   ++K  
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD--EMVKRS 356

Query: 143 GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202
              S+ T++S+ + +C   + DEA   F+ M       DVV+ ++L+   C+ +      
Sbjct: 357 IDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGM 416

Query: 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
             F    ++ +  +  ++  L++G  + G+ + A + F EMV   +  P +++ Y T L 
Sbjct: 417 ELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVS--DGVPPNIMTYNTLLD 474

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--MVFHG 320
            L +  ++++A+     ++     PT+  ++  ++ + K          WD+   +   G
Sbjct: 475 GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG---WDLFCNLSLKG 531

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD + YN +     +     E +  F EM ++   P      T I   L   + E + 
Sbjct: 532 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 591

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRL 411
           E+   +   G    +AS   L+  + + GRL
Sbjct: 592 ELIKEMRSCGFAG-DASTIGLVTNMLHDGRL 621



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 127/299 (42%), Gaps = 7/299 (2%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-SF 220
           K D+AV  F  M        ++  + LLSAI +  N+    +    +++ +  P    ++
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKM-NKFDVVISLGEQMQNLGMPHNHYTY 119

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           +IL+  + +   +  A    G+M+ +  + P +++   + L      K++ EA+  +  M
Sbjct: 120 SILINCFCRRSQLPLALAVLGKMM-KLGYEP-NIVTLSSLLNGYCHSKRISEAVALVDQM 177

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                 P    F+  +  L   N ++ AV L D  MV  G  PD +TY ++   L K   
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAVALID-RMVAKGCQPDLVTYGVVVNGLCKRGD 236

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
                   ++M + + +P  L   T I  L      + A+ ++  +   GI P   + + 
Sbjct: 237 TDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSS 296

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 457
           L+  L N GR SD  R   +M+ R+I     T   L  AF  E +      ++D + +R
Sbjct: 297 LISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR 355



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 127/303 (41%), Gaps = 9/303 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F+ +  +     K+D  +   + M   G+  +    + L++  CR+ +Q   AL  
Sbjct: 80  SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRR-SQLPLALAV 138

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLIT 263
           L ++ K+  +P+  + + LL G+     + EA     +M V  ++ N    + + T +  
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPN---TVTFNTLIHG 195

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF- 322
           L    +  EA+  +  M  + C P L  +   ++ L K  D+  A  L + M    G   
Sbjct: 196 LFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKME--QGKLE 253

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           P  L Y  I + L KNK + +    F EM     +P  +  ++ I+ L +      A  +
Sbjct: 254 PGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
            + ++E  I P   + + L+      G+L +  +  +EM+ R I    VT   L   F  
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373

Query: 443 ESR 445
             R
Sbjct: 374 HDR 376


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 133/298 (44%), Gaps = 4/298 (1%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G+G +   Y +N ++ +L KNG   +    +R M++ GV      + ++   +C  G   
Sbjct: 305 GKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVS 364

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            A   FD M    +  D+V   S++  IC+          F   + K ++PD  ++  L+
Sbjct: 365 AACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALI 424

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G+ K G ++EA     +MV++    P +V+ Y      L +  ++D A + L  M  + 
Sbjct: 425 DGYCKAGEMKEAFSVHNQMVQK-GLTP-NVVTYTALADGLCKNGEIDVANELLHEMSRKG 482

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P +  ++  ++ L K+ +    V+L +  M   G +PD++TY  + +   K   + + 
Sbjct: 483 LQPNVYTYNTIVNGLCKIGNIEQTVKLME-EMDLAGFYPDTITYTTLMDAYCKMGEMAKA 541

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
            +    M+    QPT +     +     +   E    +  ++LE GI+P   + N L+
Sbjct: 542 HELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLM 599



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 120/284 (42%), Gaps = 5/284 (1%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPD 216
           C  G+ D+ +   D +   G++ D    N+++  +C+   +   A + L  ++K  V PD
Sbjct: 288 CRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKN-GEVVEAEQLLRGMRKWGVFPD 346

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
              +  ++ G+ K GNV  A K F EM  R +  P+ ++ Y + +  + +  ++ EA + 
Sbjct: 347 NVVYTTVISGFCKLGNVSAACKLFDEM-RRKKIVPD-IVTYTSVIHGICKSGKMVEAREM 404

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
              M  +   P    ++  +D   K  +   A  + +  MV  G  P+ +TY  + + L 
Sbjct: 405 FNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHN-QMVQKGLTPNVVTYTALADGLC 463

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           KN  +    +  HEM +   QP      T +  L      E  +++   +   G  P   
Sbjct: 464 KNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTI 523

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           +   L+     +G ++        MLN+R+    VT + L   F
Sbjct: 524 TYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGF 567



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 106/249 (42%), Gaps = 20/249 (8%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  + D L KNG  +     +  M   G+  ++ T+ +I +  C  G  ++ V   + M
Sbjct: 454 TYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEM 513

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGN 232
            + G   D +   +L+ A C+   + ++A E L   + K + P   +F +L+ G+   G 
Sbjct: 514 DLAGFYPDTITYTTLMDAYCKM-GEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGM 572

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK----FLRVMKGENCFPT 288
           +E+  +    M+E+       ++   T   +L++   +   ++      + M      P 
Sbjct: 573 LEDGERLIEWMLEK------GIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPD 626

Query: 289 LKFFSNALDILVKLN-DSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
               SN  +IL+K +  + +  + W +   MV  G    + TY+ +     K K+  E  
Sbjct: 627 ----SNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEAR 682

Query: 346 KFFHEMIKN 354
           K F EM K+
Sbjct: 683 KLFEEMRKH 691


>gi|224144668|ref|XP_002325369.1| predicted protein [Populus trichocarpa]
 gi|222862244|gb|EEE99750.1| predicted protein [Populus trichocarpa]
          Length = 422

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 133/287 (46%), Gaps = 10/287 (3%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           T +LV  VL+   +SPS ++ FF WA      +   +  ++  L +N ++  MW  +  +
Sbjct: 39  TSELVFRVLRACSNSPSESLRFFNWARSYYSPTTIEYEELIITLVRNKKYASMWKLIAQV 98

Query: 140 KED----GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSAICR 194
           K++      +S  T  SI + Y   G  D+AV  F+  S     + +V   NSLL A+C 
Sbjct: 99  KDNLGDKFSVSSDTVCSIIEEYGKHGLIDQAVEVFNKCSRSLNCQHNVCVYNSLLFALC- 157

Query: 195 QENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           +      A   + R ++K + PD  ++ +L+ GW   G + EA K F E + +  +NP  
Sbjct: 158 EVKMFHGAYALVRRMIRKGIVPDKRTYGVLVNGWCSSGKLREA-KGFLEEMSKKGFNPP- 215

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V   +  +  L+    ++ A   +R M  E   P +  F++ ++ +    +    V ++ 
Sbjct: 216 VRGRDLLIEGLLNAGYLESAKDMVRRMMKEGLVPDVNTFNSMVEAICNAGEVDFCVDMYH 275

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
            +    G  PD  +Y ++   + K  R+ E  +  H +I++  +P P
Sbjct: 276 SVCKL-GFCPDINSYKILIPAVSKVGRIDEAFRLLHNLIEDGHKPFP 321



 Score = 38.5 bits (88), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 42/212 (19%)

Query: 242 EMVERFEWNPEH----VLAYETFLITLIRGKQVDEALKFLRVMK---GEN--------C- 285
           E +  F W   +     + YE  +ITL+R K+     K +  +K   G+         C 
Sbjct: 56  ESLRFFNWARSYYSPTTIEYEELIITLVRNKKYASMWKLIAQVKDNLGDKFSVSSDTVCS 115

Query: 286 ----FPTLKFFSNALDILVKLNDS---THAVQLWDIMM-------VFHGAF--------- 322
               +        A+++  K + S    H V +++ ++       +FHGA+         
Sbjct: 116 IIEEYGKHGLIDQAVEVFNKCSRSLNCQHNVCVYNSLLFALCEVKMFHGAYALVRRMIRK 175

Query: 323 ---PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
              PD  TY ++      + ++ E + F  EM K  + P        I  LL+A   E A
Sbjct: 176 GIVPDKRTYGVLVNGWCSSGKLREAKGFLEEMSKKGFNPPVRGRDLLIEGLLNAGYLESA 235

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRL 411
            ++   +++ G++P   + N ++  + N G +
Sbjct: 236 KDMVRRMMKEGLVPDVNTFNSMVEAICNAGEV 267


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/324 (20%), Positives = 153/324 (47%), Gaps = 5/324 (1%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           ++  S AV    R   RG +   + +  +V+ L K G  +   + ++ M++  +   +  
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + +I D+ C     ++A+  F  M   G+  +VV  NSL+  +C     +  +    + +
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           ++ ++P+  +F+ L++ + KEG + EA K + EM++R   +P+ +  Y + +       +
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR-SIDPD-IFTYSSLINGFCMHDR 375

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           +DEA     +M  ++CFP +  ++  +    K       ++L+   M   G   +++TYN
Sbjct: 376 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFR-EMSQRGLVGNTVTYN 434

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
            + + L +       +K F +M+ +   P  +  +  +  L    + E A+ ++ Y+ ++
Sbjct: 435 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 494

Query: 390 GILPLEASANELLVGLRNLGRLSD 413
            + P   + N ++ G+   G++ D
Sbjct: 495 KMEPDIYTYNIMIEGMCKAGKVED 518



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 136/314 (43%), Gaps = 5/314 (1%)

Query: 91  SYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLP 148
           +Y + + A++ F     +G R +   +N ++  L   GR+      +  M E  +  ++ 
Sbjct: 267 NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV 326

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+++ D++   GK  EA   +D M    ++ D+   +SL++  C  +        F   
Sbjct: 327 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 386

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K   P+  ++  L++G+ K   VEE  + F EM +R      + + Y T +  L +  
Sbjct: 387 ISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG--NTVTYNTLIQGLFQAG 444

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
             D A K  + M  +   P +  +S  LD L K      A+ +++ +       PD  TY
Sbjct: 445 DCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK-SKMEPDIYTY 503

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N++ E + K  +V +    F  +     +P  +   T I+        E A  ++  + E
Sbjct: 504 NIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKE 563

Query: 389 NGILPLEASANELL 402
           +G LP   + N L+
Sbjct: 564 DGTLPNSGTYNTLI 577



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 126/299 (42%), Gaps = 7/299 (2%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           K D+AV  F  M        +V  N LLSAI +  N+    +    R++ + +  D  S+
Sbjct: 60  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKM-NKFDLVISLGERMQNLRISYDLYSY 118

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            IL+  + +   +  A    G+M+ +  + P+ ++   + L     GK++ EA+  +  M
Sbjct: 119 NILINCFCRRSQLPLALAVLGKMM-KLGYEPD-IVTLSSLLNGYCHGKRISEAVALVDQM 176

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                 P    F+  +  L   N ++ AV L D  MV  G  PD  TY  +   L K   
Sbjct: 177 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALID-RMVARGCQPDLFTYGTVVNGLCKRGD 235

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           +        +M K + +   +   T I  L +      A+ ++  +   GI P   + N 
Sbjct: 236 IDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 295

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 457
           L+  L N GR SD  R   +M+ R+I    VT   L  AF  E +      ++D + +R
Sbjct: 296 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/384 (20%), Positives = 156/384 (40%), Gaps = 47/384 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y++N++++   +  +       + ++MK      + T +S+ + YC   +  EAV   D 
Sbjct: 116 YSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQ 175

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M +   + + V  N+L+  +    N+ S A+  ++R V +   PD  ++  ++ G  K G
Sbjct: 176 MFVMEYQPNTVTFNTLIHGLFLH-NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRG 234

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN------- 284
           +++ A     +M E+ +   + V+ Y T +  L   K V++AL     M  +        
Sbjct: 235 DIDLALSLLKKM-EKGKIEAD-VVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 292

Query: 285 ------CF----------------------PTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
                 C                       P +  FS  +D  VK      A +L+D  M
Sbjct: 293 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD-EM 351

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
           +     PD  TY+ +      + R+ E +  F  MI  +  P  +   T I     A   
Sbjct: 352 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRV 411

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVT 432
           E  +E++  + + G++    + N L+ GL   G     ++  ++M++      I+ Y + 
Sbjct: 412 EEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 471

Query: 433 MHKLKKAFYNESRSMRDIFDSLER 456
           +  L K  Y +      +F+ L++
Sbjct: 472 LDGLCK--YGKLEKALVVFEYLQK 493



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 150/351 (42%), Gaps = 7/351 (1%)

Query: 98  AVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFD 155
           AVD F    + + L S   +N ++  + K  +F+ + +    M+   +   L ++  + +
Sbjct: 64  AVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILIN 123

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
            +C   +   A+     M   G E D+V ++SLL+  C  + + S A+  ++++  +   
Sbjct: 124 CFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGK-RISEAVALVDQMFVMEYQ 182

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  +F  L+ G        EA      MV R    P+ +  Y T +  L +   +D AL
Sbjct: 183 PNTVTFNTLIHGLFLHNKASEAVALIDRMVAR-GCQPD-LFTYGTVVNGLCKRGDIDLAL 240

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
             L+ M+       +  ++  +D L    +   A+ L+   M   G  P+ +TYN +  C
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLF-TEMDNKGIRPNVVTYNSLIRC 299

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L    R  +  +   +MI+ +  P  +  +  I   +   +   A ++++ +++  I P 
Sbjct: 300 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             + + L+ G     RL + +   E M+++      VT + L K F    R
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410


>gi|357145431|ref|XP_003573640.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 523

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 142/358 (39%), Gaps = 74/358 (20%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           AW+L +   GK GRF+  W AVR M   GVL+      + + Y  A + ++A+ +FDVM 
Sbjct: 143 AWHLAIWAAGKAGRFDLAWAAVRRMLHRGVLTRRAMIIVMERYAAASELEKALKTFDVME 202

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-------------------IVD- 214
              V+ D     SLL A+C+ +N    A E L   KK                   I+D 
Sbjct: 203 KFKVQADQAVFYSLLRALCKSKN-IEDAEELLLMRKKFFPLTAEGFNIILDGWCNIIIDV 261

Query: 215 ----------------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
                           PDG S+ +++  + K GN+ +  + + EM +R  W P  +  Y 
Sbjct: 262 AEAKRVWKEMSSYCITPDGTSYTLMVSCFSKVGNLFDTLRVYDEMKKR-GWTP-GIGVYN 319

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFP-TLKFFSNALDILVKLNDSTHAVQLWDIM-- 315
           + +  L R                ENC     K FS  +D  ++LN  T+   +  +   
Sbjct: 320 SLVYVLTR----------------ENCMKDAKKIFSKIIDEGLQLNVETYNSMIIPLCES 363

Query: 316 ------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
                       M+  G  P  LTY+      +K + V E  +   +M +N   P     
Sbjct: 364 CKLDEARIMMGDMIMKGIVPTILTYH----AFLKQEGVDETLQLLRKMKENGCGPNSDTF 419

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
              I   + A+E   A+ +WN ++   I P  +    ++ GL   G +     + +EM
Sbjct: 420 LMLIDKFIQANESGNALRVWNEMIRYDISPAYSHYMAVIQGLVKHGCIPRALEYYDEM 477



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/262 (19%), Positives = 112/262 (42%), Gaps = 14/262 (5%)

Query: 101 FFRWAGRGQRLSPYAW-NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159
           FF     G  +    W N+++DV      +++M  +   +  DG     ++  +   +  
Sbjct: 239 FFPLTAEGFNIILDGWCNIIIDVAEAKRVWKEM--SSYCITPDGT----SYTLMVSCFSK 292

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G   + +  +D M   G    +   NSL+  + R+         F   + + +  + ++
Sbjct: 293 VGNLFDTLRVYDEMKKRGWTPGIGVYNSLVYVLTRENCMKDAKKIFSKIIDEGLQLNVET 352

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  ++    +   ++EA    G+M+   +     +L Y  FL    + + VDE L+ LR 
Sbjct: 353 YNSMIIPLCESCKLDEARIMMGDMI--MKGIVPTILTYHAFL----KQEGVDETLQLLRK 406

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           MK   C P    F   +D  ++ N+S +A+++W+ M+ +  + P    Y  + + L+K+ 
Sbjct: 407 MKENGCGPNSDTFLMLIDKFIQANESGNALRVWNEMIRYDIS-PAYSHYMAVIQGLVKHG 465

Query: 340 RVHEVEKFFHEMIKNEWQPTPL 361
            +    +++ EM    +   P+
Sbjct: 466 CIPRALEYYDEMKAKGFASDPI 487


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 123/247 (49%), Gaps = 8/247 (3%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRV---MKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           ++++ +    GR  + ++++RV   MK+ D   S   + ++        + + A   +  
Sbjct: 87  DILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKN 146

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEG 231
           M   G+   V ++N L+ A+CR +      L+ FL   K+  DPD  ++  L+ G  + G
Sbjct: 147 MREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFG 206

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++EA K F EMVE+ +  P  V+ Y + +  L   K VDEA+++L  MK +   P +  
Sbjct: 207 RIDEAKKLFTEMVEK-DCAPT-VVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFT 264

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S+ +D L K   S  A++L+++MM   G  P+ +TY  +   L K +++ E  +    M
Sbjct: 265 YSSLMDGLCKDGRSLQAMELFEMMMA-RGCRPNMVTYTTLITGLCKEQKIQEAVELLDRM 323

Query: 352 IKNEWQP 358
                +P
Sbjct: 324 NLQGLKP 330



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 5/183 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++    C  G+ DEA   F  M        VV   SL++ +C  +N    A+ +L  
Sbjct: 194 TYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKN-VDEAMRYLEE 252

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K K ++P+  +++ L++G  K+G   +A + F  M+ R    P  V  Y T +  L + 
Sbjct: 253 MKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMAR-GCRPNMV-TYTTLITGLCKE 310

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           +++ EA++ L  M  +   P    +   +     ++    A    D  M+  G  P+ LT
Sbjct: 311 QKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLD-EMILGGITPNRLT 369

Query: 328 YNM 330
           +N+
Sbjct: 370 WNI 372



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL---N 303
           F+ +P    AY T L  L+   Q++ A KF + M+     PT+     +L++L+K    N
Sbjct: 115 FDCDPSQK-AYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVA----SLNVLIKALCRN 169

Query: 304 DSTHAVQLWDIM-MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
           D T    L   + M   G  PDS TY  +   L +  R+ E +K F EM++ +  PT + 
Sbjct: 170 DGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVT 229

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
             + I  L  +   + A+     +   GI P   + + L+ GL   GR        E M+
Sbjct: 230 YTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMM 289

Query: 423 NR 424
            R
Sbjct: 290 AR 291



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 3/145 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCG 159
           F     RG     Y +  ++  L + GR ++       M E D   ++ T+ S+ +  CG
Sbjct: 180 FLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCG 239

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGD 218
           +   DEA+   + M   G+E +V   +SL+  +C+ + ++ +A+E F   + +   P+  
Sbjct: 240 SKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCK-DGRSLQAMELFEMMMARGCRPNMV 298

Query: 219 SFAILLEGWEKEGNVEEANKTFGEM 243
           ++  L+ G  KE  ++EA +    M
Sbjct: 299 TYTTLITGLCKEQKIQEAVELLDRM 323



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 9/216 (4%)

Query: 252 EHVLAYETFLITLIRG-KQVDEALKFLRV---MKGENCFPTLKFFSNALDILVKLNDSTH 307
           E+ +  E  L+++ RG  +V      LRV   MK  +C P+ K +   L ILV+ N    
Sbjct: 80  ENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNL 139

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKN-KRVHEVEKFFHEMIKNEWQPTPLNCATA 366
           A + +  M    G  P   + N++ + L +N   V    K F EM K    P      T 
Sbjct: 140 AFKFYKNMREI-GLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTL 198

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           I+ L      + A +++  ++E    P   +   L+ GL     + +  R+ EEM ++ I
Sbjct: 199 ISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGI 258

Query: 427 LIYEVTMHKLKKAFYNESRSMR--DIFD-SLERRCK 459
                T   L      + RS++  ++F+  + R C+
Sbjct: 259 EPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCR 294


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 144/315 (45%), Gaps = 16/315 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +++ L   GRF         M+  G L+   T+  I    C  G  ++A++ F+ M
Sbjct: 375 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 434

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGN 232
              G    VV  N+L++    + N  + A   L+ +K+   +PD  ++  L+ G+ K G 
Sbjct: 435 LKMGPLPTVVTYNTLINGYLTKGN-VNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGK 493

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +E A+  F EMVE    NP  V +Y   +    +  +VD AL  L+ M+   C P ++ +
Sbjct: 494 LESASFYFQEMVE-CGLNPNPV-SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESY 551

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  ++ L K N  + A ++ D  MV  G  P+ +TY  + + L +N R     K FH+M 
Sbjct: 552 NAVINGLSKENRFSEAEKICD-KMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDME 610

Query: 353 KNEWQPTPLNCATAITMLLD---ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           K +  P     ++ I  L     ADE E   EI       G  P   + + L+ GL   G
Sbjct: 611 KRKCLPNLYTYSSLIYGLCQEGKADEAERMSEI-------GCEPTLDTYSTLVSGLCRKG 663

Query: 410 RLSDVRRFAEEMLNR 424
           R  +  +  ++M  R
Sbjct: 664 RFYEAEQLVKDMKER 678



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 139/321 (43%), Gaps = 10/321 (3%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G G   S Y+ N ++  L K    E   N  + M   G+  SL TF ++ +     GK 
Sbjct: 155 SGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV 214

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
            EA +    +  + +  DV    SL+   CR  N       F   VK+  DP+  +++ L
Sbjct: 215 REAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 274

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G   EG V+EA     EM+E+    P  V  Y   +  L   +  +EA++ +  MK  
Sbjct: 275 INGLCNEGRVDEALDMLEEMIEK-GIEPT-VYTYTLPITALCAIEHEEEAIELVARMKKR 332

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
            C P ++ ++  +  L +L     A+ L+  M+   G  P+++TYN +   L    R   
Sbjct: 333 GCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLK-EGLVPNTVTYNALINELCVGGRFST 391

Query: 344 VEKFFHEMIKNEWQPTPLNCAT---AITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
             K FH M   E   +  N  T    I  L    + E A+ ++  +L+ G LP   + N 
Sbjct: 392 ALKIFHWM---EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNT 448

Query: 401 LLVGLRNLGRLSDVRRFAEEM 421
           L+ G    G +++  R  + M
Sbjct: 449 LINGYLTKGNVNNAARLLDLM 469



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/356 (19%), Positives = 141/356 (39%), Gaps = 36/356 (10%)

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           R++KE    +  T++++ +  C  G+ DEA+   + M   G+E  V      ++A+C  E
Sbjct: 258 RMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIE 317

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER---------- 246
           ++           K+   P+  ++  L+ G  + G +E A   + +M++           
Sbjct: 318 HEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYN 377

Query: 247 ------------------FEWNPEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGE 283
                             F W   H        Y   +  L  G  +++A+     M   
Sbjct: 378 ALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKM 437

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              PT+  ++  ++  +   +  +A +L D+M   +G  PD  TYN +     K  ++  
Sbjct: 438 GPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKE-NGCEPDEWTYNELVSGFSKWGKLES 496

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
              +F EM++    P P++    I       + +IA+ +   + E G  P   S N ++ 
Sbjct: 497 ASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVIN 556

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLERR 457
           GL    R S+  +  ++M+ + +L   +T   L        R+     IF  +E+R
Sbjct: 557 GLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKR 612



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 108/246 (43%), Gaps = 10/246 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N +++ L K  RF +       M E G+L ++ T+ ++ D  C  G+   A   F  M
Sbjct: 550 SYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 609

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
                  ++   +SL+  +C QE +   A     R+ +I  +P  D+++ L+ G  ++G 
Sbjct: 610 EKRKCLPNLYTYSSLIYGLC-QEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGR 664

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             EA +   +M ER  + P+  + Y + LI   +  +VD ALK    ++ +     L  +
Sbjct: 665 FYEAEQLVKDMKER-GFCPDREIYY-SLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIY 722

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
              +  L K      A  L+D M+       D + + ++ + L+K   +    K  H M 
Sbjct: 723 RALICALCKAGQVEEAQALFDNMLEKEWN-ADEIVWTVLVDGLLKEGELDLCMKLLHIME 781

Query: 353 KNEWQP 358
              + P
Sbjct: 782 SKNFTP 787



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 4/174 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L T++++    C  G++ EA      M   G   D     SLL A C+   +   AL+ 
Sbjct: 648 TLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNL-EVDHALKI 706

Query: 206 LNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
            + ++ K        +  L+    K G VEEA   F  M+E+ EWN + ++ +   +  L
Sbjct: 707 FHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEK-EWNADEIV-WTVLVDGL 764

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
           ++  ++D  +K L +M+ +N  P ++ +      L ++  S  +  L D + V 
Sbjct: 765 LKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKLKVL 818



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 12/254 (4%)

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI-----LLEGWEKEGNVEEANKTFGE 242
           L+   CR E +  R  +FLN +  +    G  F++     LL    K   VE A   + +
Sbjct: 133 LMIKACRNEEEIRRVADFLNEISGM----GFGFSLYSCNTLLIQLAKFEMVEGARNLYKQ 188

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M+      P  +L + T +  L +  +V EA   L  +   +  P +  +++ +    + 
Sbjct: 189 MLNS-GIQPS-LLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRN 246

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
            +   A  ++D  MV  G  P+S+TY+ +   L    RV E      EMI+   +PT   
Sbjct: 247 RNLDLAFGVFD-RMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYT 305

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
               IT L   +  E AIE+   + + G  P   +   L+ GL  LG+L        +ML
Sbjct: 306 YTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKML 365

Query: 423 NRRILIYEVTMHKL 436
              ++   VT + L
Sbjct: 366 KEGLVPNTVTYNAL 379


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 182/389 (46%), Gaps = 22/389 (5%)

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE- 141
           V EVL+L   +PS A+ FF WA   G   +  ++ LM+++LG+        N +  +K  
Sbjct: 89  VFEVLRL-IKTPSKALQFFNWAPELGFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRR 147

Query: 142 -DGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
            +G + L    F S+  SY  AG + E+V  F+ M   GV   VV  NSLL  I  +  +
Sbjct: 148 SNGTVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLL-LILLKRGR 206

Query: 199 TSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           T+ A    + +     V PD  +F IL+ G+ K   V+E  + F EM  RF+ +P+ ++ 
Sbjct: 207 TNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEM-SRFKCDPD-LVT 264

Query: 257 YETFLITLIRGKQVDEALKFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           Y T +  L R  +V+ A   +  M  K  N  P +  ++  +      ++   A+ +++ 
Sbjct: 265 YNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFE- 323

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI-KNEWQPTPLNCATAITMLLDA 373
            MV  G  P+ +TYN + + L + +++ ++++ F   +    + P      T +    +A
Sbjct: 324 EMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNA 383

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 433
                A+E++  ++   + P  A+ + L+  L   G      +  +E+  + IL+ +   
Sbjct: 384 GNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGC 443

Query: 434 HKLKKAFYNESRSMRDIFDSLERRCKTSQ 462
             L  A+       + +F+ L R  KT++
Sbjct: 444 TPLVAAY-------KSMFEFLCRNGKTAK 465


>gi|255660866|gb|ACU25602.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 484

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 170/373 (45%), Gaps = 12/373 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC-ATAITML 370
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT  +     I+  
Sbjct: 243 VEEMKGF-GIKPNTITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSH 301

Query: 371 LDADEPEIAIEIWNYILENGILPLEAS-ANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
             +  P+ A ++   ++   + P EA     L+     +G+     +  ++++ + I++ 
Sbjct: 302 CKSGNPDAAADVLKAMIRLSV-PTEAGHYGXLIXNFCKVGQYDKAVKLLDKLIEKDIILR 360

Query: 430 EVTMHKLKKAFYN 442
             +   L+ + YN
Sbjct: 361 PQSTLHLEPSAYN 373


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 142/323 (43%), Gaps = 13/323 (4%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAG 161
           G   R+S + +N +++ L K G+  +   A+ + KE+     P    TF  +    C  G
Sbjct: 156 GEEARISSFVYNYLLNELVKGGKVHE---AIFLFKENLAFHSPPNTWTFNILIRGLCRVG 212

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--PDGDS 219
           + ++    F+ M   G   DVV  N+L+S +C+  N+  RA + L  V+   D  PD  +
Sbjct: 213 EVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKA-NELDRACDLLKEVQSRNDCSPDVMT 271

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  ++ G+ K G +E A+  F EM+ R    P  V+ +   +    +   +  A      
Sbjct: 272 YTSIISGFRKLGKLEAASVLFEEMI-RSGIEPT-VVTFNVLIDGFGKIGNMVAAEAMHEK 329

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M   +C P +  F++ +D   +  D    +++WD+M       P+  TY++I   L K+ 
Sbjct: 330 MASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKA-RNVSPNIYTYSVIINALCKDN 388

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           R+HE      ++  ++  P P      I     A   + A  I   + E    P + +  
Sbjct: 389 RIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFT 448

Query: 400 ELLVGLRNLGRLSDVRRFAEEML 422
            L++G    GR+ +     ++ML
Sbjct: 449 ILIIGHCMKGRMVEALDIFKKML 471



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 17/204 (8%)

Query: 116 WNLMVDVLGKNGRF---EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +N+++D  GK G     E M    ++     +  + TF S+ D YC  G     +  +DV
Sbjct: 307 FNVLIDGFGKIGNMVAAEAMHE--KMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDV 364

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M    V  ++   + +++A+C+ +N+   A + L ++K   V P    +  +++G+ K G
Sbjct: 365 MKARNVSPNIYTYSVIINALCK-DNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAG 423

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLI----RGKQVDEALKFLRVMKGENCFP 287
           NV+EAN    EM E+    P+ V    TF I +I    +G+ V EAL   + M    C P
Sbjct: 424 NVDEANVIVTEMEEK-RCRPDKV----TFTILIIGHCMKGRMV-EALDIFKKMLAIGCAP 477

Query: 288 TLKFFSNALDILVKLNDSTHAVQL 311
                S+ +  L+K    + A  +
Sbjct: 478 DNITISSLVACLLKAGKPSEAFHI 501



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 16/218 (7%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  +  S C  G +D   M    M   G   D   +  L+++        ++A +F   
Sbjct: 95  TYELLIRSLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSF-------AQAGKFDLA 147

Query: 209 VKKIVDPDGDSFAI-------LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
            K I++  G+   I       LL    K G V EA   F E +     +P +   +   +
Sbjct: 148 KKLIIEVQGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAF--HSPPNTWTFNILI 205

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             L R  +V++  +    M+   C P +  ++  +  L K N+   A  L   +   +  
Sbjct: 206 RGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDC 265

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            PD +TY  I     K  ++      F EMI++  +PT
Sbjct: 266 SPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPT 303



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 83/207 (40%), Gaps = 4/207 (1%)

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D      L+  + + G  + A K   E+  + E        Y   L  L++G +V EA+ 
Sbjct: 127 DSRVLGFLVTSFAQAGKFDLAKKLIIEV--QGEEARISSFVYNYLLNELVKGGKVHEAIF 184

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
             +     +  P    F+  +  L ++ +     +L++ M  F G  PD +TYN +   L
Sbjct: 185 LFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSF-GCLPDVVTYNTLISGL 243

Query: 336 IKNKRVHEVEKFFHEM-IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
            K   +        E+  +N+  P  +   + I+      + E A  ++  ++ +GI P 
Sbjct: 244 CKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPT 303

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEM 421
             + N L+ G   +G +       E+M
Sbjct: 304 VVTFNVLIDGFGKIGNMVAAEAMHEKM 330



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 11/206 (5%)

Query: 242 EMVERFEWNPEHVLAYET--FLIT-LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
           EMV  +  +  H++      FL+T   +  + D A K +  ++GE    +   ++  L+ 
Sbjct: 113 EMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEVQGEEARISSFVYNYLLNE 172

Query: 299 LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK---FFHEMIKNE 355
           LVK      A+ L+   + FH   P++ T+N++   L    RV EVEK    F+ M    
Sbjct: 173 LVKGGKVHEAIFLFKENLAFHSP-PNTWTFNILIRGLC---RVGEVEKGFELFNAMQSFG 228

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYIL-ENGILPLEASANELLVGLRNLGRLSDV 414
             P  +   T I+ L  A+E + A ++   +   N   P   +   ++ G R LG+L   
Sbjct: 229 CLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAA 288

Query: 415 RRFAEEMLNRRILIYEVTMHKLKKAF 440
               EEM+   I    VT + L   F
Sbjct: 289 SVLFEEMIRSGIEPTVVTFNVLIDGF 314


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/324 (20%), Positives = 153/324 (47%), Gaps = 5/324 (1%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           ++  S AV    R   RG +   + +  +V+ L K G  +   + ++ M++  +   +  
Sbjct: 182 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 241

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + +I D+ C     ++A+  F  M   G+  +VV  NSL+  +C     +  +    + +
Sbjct: 242 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 301

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           ++ ++P+  +F+ L++ + KEG + EA K + EM++R   +P+ +  Y + +       +
Sbjct: 302 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR-SIDPD-IFTYSSLINGFCMHDR 359

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           +DEA     +M  ++CFP +  ++  +    K       ++L+   M   G   +++TYN
Sbjct: 360 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFR-EMSQRGLVGNTVTYN 418

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
            + + L +       +K F +M+ +   P  +  +  +  L    + E A+ ++ Y+ ++
Sbjct: 419 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 478

Query: 390 GILPLEASANELLVGLRNLGRLSD 413
            + P   + N ++ G+   G++ D
Sbjct: 479 KMEPDIYTYNIMIEGMCKAGKVED 502



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 136/314 (43%), Gaps = 5/314 (1%)

Query: 91  SYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLP 148
           +Y + + A++ F     +G R +   +N ++  L   GR+      +  M E  +  ++ 
Sbjct: 251 NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV 310

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+++ D++   GK  EA   +D M    ++ D+   +SL++  C  +        F   
Sbjct: 311 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 370

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K   P+  ++  L++G+ K   VEE  + F EM +R      + + Y T +  L +  
Sbjct: 371 ISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG--NTVTYNTLIQGLFQAG 428

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
             D A K  + M  +   P +  +S  LD L K      A+ +++ +       PD  TY
Sbjct: 429 DCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK-SKMEPDIYTY 487

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N++ E + K  +V +    F  +     +P  +   T I+        E A  ++  + E
Sbjct: 488 NIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKE 547

Query: 389 NGILPLEASANELL 402
           +G LP   + N L+
Sbjct: 548 DGTLPNSGTYNTLI 561



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 126/299 (42%), Gaps = 7/299 (2%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           K D+AV  F  M        +V  N LLSAI +  N+    +    R++ + +  D  S+
Sbjct: 44  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKM-NKFDLVISLGERMQNLRISYDLYSY 102

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            IL+  + +   +  A    G+M+ +  + P+ ++   + L     GK++ EA+  +  M
Sbjct: 103 NILINCFCRRSQLPLALAVLGKMM-KLGYEPD-IVTLSSLLNGYCHGKRISEAVALVDQM 160

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                 P    F+  +  L   N ++ AV L D  MV  G  PD  TY  +   L K   
Sbjct: 161 FVMEYQPNTVTFNTLIHGLFLHNKASEAVALID-RMVARGCQPDLFTYGTVVNGLCKRGD 219

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           +        +M K + +   +   T I  L +      A+ ++  +   GI P   + N 
Sbjct: 220 IDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 279

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 457
           L+  L N GR SD  R   +M+ R+I    VT   L  AF  E +      ++D + +R
Sbjct: 280 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 338



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/384 (20%), Positives = 156/384 (40%), Gaps = 47/384 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y++N++++   +  +       + ++MK      + T +S+ + YC   +  EAV   D 
Sbjct: 100 YSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQ 159

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M +   + + V  N+L+  +    N+ S A+  ++R V +   PD  ++  ++ G  K G
Sbjct: 160 MFVMEYQPNTVTFNTLIHGLFLH-NKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRG 218

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN------- 284
           +++ A     +M E+ +   + V+ Y T +  L   K V++AL     M  +        
Sbjct: 219 DIDLALSLLKKM-EKGKIEAD-VVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 276

Query: 285 ------CF----------------------PTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
                 C                       P +  FS  +D  VK      A +L+D  M
Sbjct: 277 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD-EM 335

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
           +     PD  TY+ +      + R+ E +  F  MI  +  P  +   T I     A   
Sbjct: 336 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRV 395

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVT 432
           E  +E++  + + G++    + N L+ GL   G     ++  ++M++      I+ Y + 
Sbjct: 396 EEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSIL 455

Query: 433 MHKLKKAFYNESRSMRDIFDSLER 456
           +  L K  Y +      +F+ L++
Sbjct: 456 LDGLCK--YGKLEKALVVFEYLQK 477



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 150/351 (42%), Gaps = 7/351 (1%)

Query: 98  AVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFD 155
           AVD F    + + L S   +N ++  + K  +F+ + +    M+   +   L ++  + +
Sbjct: 48  AVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILIN 107

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
            +C   +   A+     M   G E D+V ++SLL+  C  + + S A+  ++++  +   
Sbjct: 108 CFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGK-RISEAVALVDQMFVMEYQ 166

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  +F  L+ G        EA      MV R    P+ +  Y T +  L +   +D AL
Sbjct: 167 PNTVTFNTLIHGLFLHNKASEAVALIDRMVAR-GCQPD-LFTYGTVVNGLCKRGDIDLAL 224

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
             L+ M+       +  ++  +D L    +   A+ L+   M   G  P+ +TYN +  C
Sbjct: 225 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLF-TEMDNKGIRPNVVTYNSLIRC 283

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L    R  +  +   +MI+ +  P  +  +  I   +   +   A ++++ +++  I P 
Sbjct: 284 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 343

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             + + L+ G     RL + +   E M+++      VT + L K F    R
Sbjct: 344 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 394


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 134/282 (47%), Gaps = 11/282 (3%)

Query: 64  SSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSP--YAWNLM 119
           ++ D+ S +   G +PT +  +  L   L +     A+ F+R   R  R+SP  Y +NL+
Sbjct: 147 NATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRC-RISPNSYTFNLV 205

Query: 120 VDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
           +  L K+G+ E+    +R M+  G+  ++ ++ ++   +C  G    A    ++M  +G+
Sbjct: 206 LSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGL 265

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEAN 237
           E +VV  NSL+   C+ E +   A  F + +K + V P+  ++  L+ G+ + GN   A 
Sbjct: 266 EPNVVTFNSLIHGFCK-EGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAG 324

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           K + EM+         +L Y   ++ L +  +  +A   ++ +  EN  P    +S  + 
Sbjct: 325 KVYEEMMR--NGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALIS 382

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
                 +S  A QL+   MV  G  P+  T+ M+    +KN+
Sbjct: 383 GQCARKNSDRAFQLYK-SMVRSGCHPNEQTFKMLTSAFVKNE 423



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 129/325 (39%), Gaps = 59/325 (18%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-------------------TFASIFDSY 157
           ++++ +L K  +F+   + +R +     + LP                    F S+F +Y
Sbjct: 80  SIILHILTKKSKFKSAQSILRTLLASRSIDLPGKLFDTLLFSYRMCDSSPRVFDSLFKTY 139

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPD 216
               K+  A   F  M  +G    V + N+ LS++    ++   AL F   +++  + P+
Sbjct: 140 AHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLL-DFHRVDIALTFYREMRRCRISPN 198

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +F ++L    K G +E+A +   EM E     P +V++Y T    LI G         
Sbjct: 199 SYTFNLVLSALCKSGKLEKAVEVLREM-ESVGITP-NVVSYNT----LIAG--------- 243

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
                  +C   L      L I  KL +          +M  +G  P+ +T+N +     
Sbjct: 244 -------HCNKGL------LSIATKLKN----------LMGKNGLEPNVVTFNSLIHGFC 280

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           K  ++HE  +FF EM      P  +   T I          +A +++  ++ NG+     
Sbjct: 281 KEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADIL 340

Query: 397 SANELLVGLRNLGRLSDVRRFAEEM 421
           + N L++GL   G+        +E+
Sbjct: 341 TYNALILGLCKEGKTKKAAFLVKEL 365


>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Vitis vinifera]
          Length = 513

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 140/305 (45%), Gaps = 49/305 (16%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +N++V    KNG  +  +  V  MK+  V   +L T++++ +  CG+G+  EA+  F+ M
Sbjct: 203 FNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEM 262

Query: 174 -SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEG 231
            S   +  D +  N+L++  C  E +  RAL+ +  +KK   +P+  +++ L+ G+ KEG
Sbjct: 263 VSKDQILPDALTYNALINGFCHGE-KVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEG 321

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +EEA + F EM +     P+ V  Y T +    R  +VDEA++ L+ M+   C      
Sbjct: 322 RLEEAKEVFDEM-KSLGLKPDTV-GYTTLINFFCRAGRVDEAMELLKDMRENKC------ 373

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
                                           D++T+N+I   L +  R  E       +
Sbjct: 374 ------------------------------RADTVTFNVILGGLCREGRFEEARGMLERL 403

Query: 352 IKNEWQPTPLNCAT---AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
               ++   LN A+    +  L    E + A ++   +L  G+LP  A++NELLV L   
Sbjct: 404 ---PYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEA 460

Query: 409 GRLSD 413
           G++ D
Sbjct: 461 GKVGD 465



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 121/255 (47%), Gaps = 22/255 (8%)

Query: 98  AVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIF 154
           A++ F       ++ P A  +N +++      + ++    +  MK++G   ++  ++++ 
Sbjct: 255 AIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALM 314

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IV 213
           + +C  G+ +EA   FD M   G++ D V   +L++  CR   +   A+E L  +++   
Sbjct: 315 NGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRA-GRVDEAMELLKDMRENKC 373

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV--LAYETFLITLIRGKQVD 271
             D  +F ++L G  +EG  EEA      M+ER  +   ++   +Y   L +L R  ++ 
Sbjct: 374 RADTVTFNVILGGLCREGRFEEARG----MLERLPYEGVYLNKASYRIVLNSLCREGELQ 429

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-----PDSL 326
           +A + + +M G    P    F+ + ++LV L     A ++ D +M   G       P+  
Sbjct: 430 KATQLVGLMLGRGVLP---HFATSNELLVHL---CEAGKVGDAVMALLGLLELGFKPEPN 483

Query: 327 TYNMIFECLIKNKRV 341
           ++ ++ E + + +++
Sbjct: 484 SWALLVELICRERKL 498



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 2/168 (1%)

Query: 256 AYETFLITLIRGKQVDEALKFL-RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           A  T L  L+   QVD   KFL    K  N  P    F+  +    K  D   A ++ + 
Sbjct: 166 AISTCLNLLVESNQVDLTRKFLLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEE 225

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI-KNEWQPTPLNCATAITMLLDA 373
           M   H ++P+ +TY+ +   L  + R+ E  + F EM+ K++  P  L     I      
Sbjct: 226 MKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHG 285

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           ++ + A++I  ++ +NG  P   + + L+ G    GRL + +   +EM
Sbjct: 286 EKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEM 333



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 1/181 (0%)

Query: 266 RGKQVDEALKFLRVMKGENC-FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
           +   +D A + +  MK  +  +P L  +S  ++ L        A++L++ M+      PD
Sbjct: 212 KNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPD 271

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
           +LTYN +       ++V    K    M KN   P   N +  +         E A E+++
Sbjct: 272 ALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFD 331

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            +   G+ P       L+      GR+ +     ++M   +     VT + +      E 
Sbjct: 332 EMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREG 391

Query: 445 R 445
           R
Sbjct: 392 R 392


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 138/297 (46%), Gaps = 10/297 (3%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL----SPYAWNLMVDVLGKNGRFEQ 131
           G +PT   +  +++         VD F    R +++    S + +N +++ L K+G+F++
Sbjct: 326 GFVPTEAALSSLVE-GLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDE 384

Query: 132 MWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
                + M E G+ +   T++ + DS+C  GK D A+     M M G++  V   NSL++
Sbjct: 385 AELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLIN 444

Query: 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
             C+  N ++    F   + K + P   S+  L+ G+  +G + EA + + EM  +    
Sbjct: 445 GHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGK--GI 502

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
             +   + T +  L R  ++ +A +    M  +N  P    ++  ++   K  ++  A +
Sbjct: 503 APNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFE 562

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
           L +  MV  G  PD+ TY  +   L    RV E +KF  ++ +  ++   + C +A+
Sbjct: 563 LLN-QMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEM-CYSAL 617



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 138/314 (43%), Gaps = 5/314 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVR-VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +  ++  L   GR  +    +  + +E   L+   ++++   YC  G+  +A+     
Sbjct: 577 YTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCRE 636

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   GV+ D+V    L+    ++++ ++      N   + + PD   +  +++G+ K G+
Sbjct: 637 MVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGS 696

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V++A   +  M++  E    +++ Y T +  L +   +D+A    + M   N  P    +
Sbjct: 697 VKKAFGIWDIMID--EGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTY 754

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
              LD L +      AVQL + M+   G   ++++YN++     K  RV E  K   EMI
Sbjct: 755 CCFLDHLAREGSMEKAVQLHNDML--KGLLANTVSYNILVRGFCKLGRVEEATKLLDEMI 812

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
            N   P  +  +T I         + AIE W+ +L  G+ P   + N L+ G    G L 
Sbjct: 813 DNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELG 872

Query: 413 DVRRFAEEMLNRRI 426
                 ++M+ R +
Sbjct: 873 KAFELRDDMIRRGV 886



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 47/343 (13%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRV----MKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           L+   +N+++  L KN R   +W AV +    +++    S  T+ ++    C   +++  
Sbjct: 259 LNVVVYNVLIHGLCKNKR---VWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVG 315

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
               D M   G      A++SL+  + R++ +   A + +NRVKK+   P    +  L+ 
Sbjct: 316 AGVMDEMIELGFVPTEAALSSLVEGL-RRKGKVVDAFDLVNRVKKVGAMPSLFVYNALIN 374

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K+G  +EA   F EM E+     +  + Y   + +  R  ++D A+ FL  M     
Sbjct: 375 SLCKDGKFDEAELLFKEMGEKGLCAND--VTYSILIDSFCRRGKLDTAIHFLGKMIMAGI 432

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
             T+  +++ ++   KL + + AV  +D  M+  G  P  ++Y  +        ++HE  
Sbjct: 433 KITVYPYNSLINGHCKLGNLSAAVSFFD-EMIDKGLKPTVVSYTSLISGYCNKGKLHEAF 491

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           + +HEM      P      T I+ L  A+                               
Sbjct: 492 RLYHEMTGKGIAPNTYTFTTLISALFRAN------------------------------- 520

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 448
               R++D  R  +EML + ++  EVT + + +    E  +++
Sbjct: 521 ----RMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVK 559


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 149/342 (43%), Gaps = 35/342 (10%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + + L++D L K+G   +     R M   G+  ++  ++S+ +  C  GK  EAV  FD 
Sbjct: 80  FTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDE 139

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G++ +V+  NSL+ A CR          F   V + + PD  +F  L++   K+G 
Sbjct: 140 MVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGK 199

Query: 233 VEEANKTFGEMVER----------------------------FEWNPEH-----VLAYET 259
           V+EA K F  M+++                            FE   E      V++Y T
Sbjct: 200 VQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNT 259

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH 319
            +       + +EA+   R M+ E   P++  ++  L  L +      A +L++ M +  
Sbjct: 260 LINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQIC- 318

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
           G  P   TY ++ + L KN  + E    F  +   +++P+    +  I  +  A   E A
Sbjct: 319 GQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESA 378

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           +EI++ I   G++P   + N ++ GL   G+L +  R   +M
Sbjct: 379 MEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQM 420



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 136/295 (46%), Gaps = 6/295 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCG 159
           F +  G G       +  ++D L K G+ ++ +    +M + G   ++ T+ S+ +  C 
Sbjct: 172 FSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCL 231

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
             + D AV  F+VM   G++ DV++ N+L++  C    +T  A+    +++ + + P   
Sbjct: 232 HHQMDHAVRLFEVMVERGIKIDVISYNTLINGYC-TSGKTEEAMTLFRKMQYEELTPSIT 290

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ ILL+   + G +  A + F  M  +       +  Y   L  L +   ++EA+   R
Sbjct: 291 TYTILLKALYQNGRIRTAKELFNNM--QICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFR 348

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            +K     P+++ +S  +  + +      A++++D +    G  P+ +TYN++   L K 
Sbjct: 349 SLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTV-GLVPNIVTYNIMINGLCKE 407

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            ++ E E+ F +M ++  +   ++    I   L  ++ + A+E    + E    P
Sbjct: 408 GKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSP 462



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 143/317 (45%), Gaps = 15/317 (4%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L T +++    C  GK  +A+  FD M+  G + D++    L++A+ R+  Q  RA+E 
Sbjct: 8   NLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINAL-RKTRQARRAVEL 66

Query: 206 LNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
             R + +I   +  ++ ++++   K+G   +  K F EM+      P +V+ Y + +  L
Sbjct: 67  HRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMIN-MGICP-NVIVYSSLINGL 124

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            R  ++ EA+     M  +     +  +++ +    +      A + +   MV  G  PD
Sbjct: 125 CRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFS-QMVGEGILPD 183

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +T+  + + L K  +V E  K F  MIK    P  +   + +  L    + + A+ ++ 
Sbjct: 184 VVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFE 243

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDV----RRFAEEMLNRRILIYEVTMHKLKKAF 440
            ++E GI     S N L+ G    G+  +     R+   E L   I  Y +    L KA 
Sbjct: 244 VMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTI----LLKAL 299

Query: 441 YNES--RSMRDIFDSLE 455
           Y     R+ +++F++++
Sbjct: 300 YQNGRIRTAKELFNNMQ 316



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ T+  + +  C  GK  EA   F  M   G EQD ++ N ++     QENQ  +A+EF
Sbjct: 393 NIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFL-QENQVQKAMEF 451

Query: 206 LNRVKKIVDPDGDSFAILL 224
           L R+++      DS  ++L
Sbjct: 452 LKRMREKNFSPNDSVTLML 470


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 144/341 (42%), Gaps = 36/341 (10%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           Y   +++  L K+G+ E+    V  +   G+  + TF       C A +  +A   FD M
Sbjct: 17  YTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDISTFNIYISGLCRASRIGDAQTVFDGM 76

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             HG   + +  N+LLS +C     +     +   +K    PD  ++  LL G+ K G +
Sbjct: 77  RKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKL 136

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA K F   V+R  + P+ V+ Y   +    +  ++DEA + L+ M  E+  P +  ++
Sbjct: 137 DEALKIFDGAVKR-GFVPD-VVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYN 194

Query: 294 NALDILVK---------------------------------LNDSTHAVQLWDIMMVFHG 320
           + ++ L K                                 L     A QL +  MV +G
Sbjct: 195 SLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQLLE-KMVLNG 253

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD ++YN +   L + + V E  K F  +++  ++P        I  LL  D    A 
Sbjct: 254 CKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAF 313

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           E+++ ++++G+ P   +    + GL   GR+ D     ++M
Sbjct: 314 ELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDM 354



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 10/293 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L   GR         R++K      + T+ ++   +C  GK DEA+  FD   
Sbjct: 88  YNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAV 147

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             G   DVV  N+L++  C+ + +   A   L R V + + PD  ++  L+ G  K G V
Sbjct: 148 KRGFVPDVVTYNALINGFCKAD-KLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRV 206

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRG-KQVDEALKFLRVMKGENCFPTLKFF 292
           +EA      ++    ++P +V+ Y T +  L R  ++++ A + L  M    C P +  +
Sbjct: 207 DEARM----LIVDKGFSP-NVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSY 261

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +  L +    + A++L+  ++   G  P+  TYN++ + L+K  RV+E  + F  ++
Sbjct: 262 NALIHGLAREQGVSEALKLFGSVL-RQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLV 320

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           K+  +P  +     I  L  A   E A+ +   + E G +P   S N ++ GL
Sbjct: 321 KHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGL 373



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 151/313 (48%), Gaps = 15/313 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYCGA-GKYDEAVMSFDV 172
           +N +V+ L KNGR ++     R++  D   S  + T++++    C    + + A    + 
Sbjct: 193 YNSLVNGLCKNGRVDE----ARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQLLEK 248

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M ++G + D+V+ N+L+  + R++   S AL+    V ++  +P+  ++ IL++G  KE 
Sbjct: 249 MVLNGCKPDIVSYNALIHGLAREQG-VSEALKLFGSVLRQGYEPEVPTYNILIDGLLKED 307

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V EA + F  +V +    P+ +  Y  F+  L +  +V++AL  L+ M  + C P +  
Sbjct: 308 RVNEAFELFSGLV-KHGLEPDAI-TYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVS 365

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
            +  ++ L K      A  L   M    G  P+++++N +     +  +  +    F EM
Sbjct: 366 HNAVINGLCKEKRVDEAEVLLSGMEA-KGCSPNAISFNTLICGQCRAGKWKKAMTTFKEM 424

Query: 352 IKNEWQPTPLNCATAITMLLDA-DEPEI--AIEIWNYILENGILPLEASANELLVGLRNL 408
           +K   +PT +     +  L  A  E  I  AI +++ ++E G +P   + + L+ GL   
Sbjct: 425 LKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKA 484

Query: 409 GRLSDVRRFAEEM 421
           G+L D RR    M
Sbjct: 485 GKLDDARRLLGAM 497



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 135/308 (43%), Gaps = 7/308 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++D L K  R  + +     + + G+     T+    D  C AG+ ++A++    M 
Sbjct: 296 YNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMD 355

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   DVV+ N++++ +C+++      +       K   P+  SF  L+ G  + G  +
Sbjct: 356 EKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWK 415

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTLKF 291
           +A  TF EM++R       V+ Y   +  L + +Q   + EA+     M  +   P +  
Sbjct: 416 KAMTTFKEMLKR--GVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVT 473

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S  +D L K      A +L   M    G  P+  TYN +   L    +V E  + F  M
Sbjct: 474 YSALIDGLGKAGKLDDARRLLGAMEA-KGCIPNVYTYNSLISGLCGLDKVDEALELFVAM 532

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           ++    P  +   T I+ L   +  + A+ +++  LE G++P       L+ GL  + R+
Sbjct: 533 VEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARV 592

Query: 412 SDVRRFAE 419
            +  +  +
Sbjct: 593 DEALKLLQ 600



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 91/209 (43%), Gaps = 4/209 (1%)

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           +++ +I  PD  +  ILL    K G +E+A++   +++ +   +   +  +  ++  L R
Sbjct: 6   DKLVRIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCD---ISTFNIYISGLCR 62

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
             ++ +A      M+    +P    ++  L  L      + A  L++  M+  G  PD +
Sbjct: 63  ASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYE-RMIKAGYSPDVV 121

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           TYN +     K  ++ E  K F   +K  + P  +     I     AD+ + A  I   +
Sbjct: 122 TYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRM 181

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVR 415
           +   ++P   + N L+ GL   GR+ + R
Sbjct: 182 VSESLVPDVVTYNSLVNGLCKNGRVDEAR 210



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 85/193 (44%), Gaps = 16/193 (8%)

Query: 260 FLITLIRGKQVDEALKFLR--VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
            L +L++  ++++A +F+   ++KG     T   + + L           A ++ D   V
Sbjct: 22  LLRSLLKSGKIEKAHRFVEQLLVKGLCDISTFNIYISGL---------CRASRIGDAQTV 72

Query: 318 F-----HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
           F     HG +P+ +TYN +   L    R+ + +  +  MIK  + P  +   T +     
Sbjct: 73  FDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCK 132

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
             + + A++I++  ++ G +P   + N L+ G     +L + +R  + M++  ++   VT
Sbjct: 133 VGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVT 192

Query: 433 MHKLKKAFYNESR 445
            + L        R
Sbjct: 193 YNSLVNGLCKNGR 205


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           T++ +    C  G++ EA    + M+ HG+  DVV    L+  +C+ + + + A++ LN 
Sbjct: 286 TYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCK-DGRATHAMDLLNL 344

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V+K  +P   ++ +LL G  KEG V +A K    M+E+       V+ Y T +  L   
Sbjct: 345 MVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEK--GKKADVVTYNTLMKGLCDK 402

Query: 268 KQVDEALKFLRVM-KGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
            +VDEALK    M   ENC  P +  F+  +  L K    T AV++    MV  G+  + 
Sbjct: 403 GKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHR-KMVKKGSCGNL 461

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TYNM+    +K  ++ E  + + +++   + P     +  I          IA  ++  
Sbjct: 462 VTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCE 521

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
           +  +G+ P     N L+  L   G L   +   +EM N
Sbjct: 522 MRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGN 559



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 139/332 (41%), Gaps = 44/332 (13%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A+   R  GR + +SP   ++N +++ L K  + ++    +  M+  G   +  T  ++ 
Sbjct: 163 AMGLIREMGR-KSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLM 221

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           D  C  G+ DEA+   + M   G + DVV   +L+S  C                     
Sbjct: 222 DGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNN------------------- 262

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
                           GN++   + F EM+ +      +V+ Y   +  L R  Q  EA 
Sbjct: 263 ----------------GNLDRGKELFDEMLGK--GISANVVTYSCLVHGLCRLGQWKEAN 304

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
             L  M      P +  ++  +D L K   +THA+ L ++ MV  G  P ++TYN++   
Sbjct: 305 TVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNL-MVEKGEEPSNVTYNVLLSG 363

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL--ENGIL 392
           L K   V +  K    MI+   +   +   T +  L D  + + A++++N +   EN + 
Sbjct: 364 LCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLE 423

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           P   + N L+ GL   GRL+   +   +M+ +
Sbjct: 424 PNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKK 455



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 137/311 (44%), Gaps = 8/311 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  ++D L K+GR     + + +M E G   S  T+  +    C  G   +A     +M 
Sbjct: 322 YTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMI 381

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV---KKIVDPDGDSFAILLEGWEKEG 231
             G + DVV  N+L+  +C  + +   AL+  N +   +  ++P+  +F +L+ G  KEG
Sbjct: 382 EKGKKADVVTYNTLMKGLC-DKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEG 440

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            + +A K   +MV++      +++ Y   L   ++  ++ EA++  + +      P    
Sbjct: 441 RLTKAVKIHRKMVKKGSCG--NLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFT 498

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S  +D   K+     A  L+  M   HG  P    YN +   L K   + + +  F EM
Sbjct: 499 YSILIDGFCKMRMLNIAKGLFCEMRT-HGLNPALFDYNTLMASLCKEGSLEQAKSLFQEM 557

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
                +P  ++  T I   L A + +   E+   ++E G+ P   + + L+  L  LG L
Sbjct: 558 GNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGEL 617

Query: 412 SDVRRFAEEML 422
            + +   E M+
Sbjct: 618 DEAKSALERMV 628



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 129/294 (43%), Gaps = 43/294 (14%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDE 165
           +G+  S   +N+++  L K G     +  +R+M E G  + + T+ ++    C  GK DE
Sbjct: 348 KGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDE 407

Query: 166 AVMSFDVM--SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-------------- 209
           A+  F+ M  + + +E +V   N L+  +C+ E + ++A++   ++              
Sbjct: 408 ALKLFNSMFDNENCLEPNVFTFNMLIGGLCK-EGRLTKAVKIHRKMVKKGSCGNLVTYNM 466

Query: 210 ------------------KKIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
                             K+++D    P+  +++IL++G+ K   +  A   F EM    
Sbjct: 467 LLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEM-RTH 525

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
             NP  +  Y T + +L +   +++A    + M   NC P +  F+  +D  +K  D   
Sbjct: 526 GLNPA-LFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQF 584

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
             +L  + MV  G  PD+LT++ +   L K   + E +     M+ + + P  L
Sbjct: 585 VKEL-QMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDAL 637



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 104/264 (39%), Gaps = 7/264 (2%)

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
            N L+ A+ R  N    A     R+  + V P   S + L+E +      +      G +
Sbjct: 77  CNFLVDALARSRNY-GLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLV 135

Query: 244 VER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           ++R F  N   V      L  L R   V EA+  +R M  ++  P +  ++  ++ L K 
Sbjct: 136 LKRGFTVN---VFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKA 192

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                AV L  + M   G FP+S+T   + + L K+ R+ E  +    M K  +    + 
Sbjct: 193 KKLKEAVGLL-LEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVL 251

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
             T I+   +    +   E+++ +L  GI     + + L+ GL  LG+  +       M 
Sbjct: 252 YGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMA 311

Query: 423 NRRILIYEVTMHKLKKAFYNESRS 446
              I    VT   L      + R+
Sbjct: 312 EHGIHPDVVTYTGLIDGLCKDGRA 335


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 143/343 (41%), Gaps = 11/343 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           F   + +G       +  MV  L K G+ +         K     S+P + ++ D  C  
Sbjct: 202 FVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKP----SVPVYNALIDGMCKE 257

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G+ + A+     M  +GV+ +VV+ + +++++C   N       F     +  D +  +F
Sbjct: 258 GRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTF 317

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L++G    G + EA   +  M++  +    +V+AY T +  L     ++EAL+    M
Sbjct: 318 TPLIKGCFMRGKLYEALDLWKLMIQ--DGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQM 375

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
           +   C P +  +S  +D   K  D   A + W+  M+ HG  P+ +TY  + + L KN  
Sbjct: 376 QRSGCLPNVTTYSILIDGFAKSGDLVGASETWN-RMISHGCRPNVVTYTCMVDVLCKNSM 434

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
             +      +M      P  +   T I  L      E A+++   +  +G LP   + NE
Sbjct: 435 FDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNE 494

Query: 401 LLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKA 439
           LL  L  + +  +     +E+    L   ++ Y   ++   +A
Sbjct: 495 LLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRA 537



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 154/379 (40%), Gaps = 43/379 (11%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           PD V     +S    +  +D  R  AGR +   P  +N ++D + K GR E     +  M
Sbjct: 212 PDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVP-VYNALIDGMCKEGRIEVAIKLLGEM 270

Query: 140 KEDGV---------------------LSLPTFASIFDSYCGA---------------GKY 163
            ++GV                     L+   FA +F   C A               GK 
Sbjct: 271 MDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKL 330

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            EA+  + +M   G E +VVA N+L+  +C        AL+  +++++    P+  +++I
Sbjct: 331 YEALDLWKLMIQDGCEPNVVAYNTLIHGLC-SNGSLEEALQVCDQMQRSGCLPNVTTYSI 389

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G+ K G++  A++T+  M+      P +V+ Y   +  L +    D+A   +  M  
Sbjct: 390 LIDGFAKSGDLVGASETWNRMISH-GCRP-NVVTYTCMVDVLCKNSMFDQANSLVEKMTL 447

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           E C P    F+  +  L        A++L + M   HG  P+  TYN + + L +  +  
Sbjct: 448 EGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQ-GHGCLPNITTYNELLDALFRMNKYE 506

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E    F E+     QP  +   T +     A     A++++   L  G  P   + N ++
Sbjct: 507 EAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMI 566

Query: 403 VGLRNLGRLSDVRRFAEEM 421
                 G++    +  E +
Sbjct: 567 HAYCKQGKVKIAAQLVERV 585



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 126/294 (42%), Gaps = 9/294 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F+R    G + +   +N ++D L    +F+ +      MK+DG++ ++ T+  +  + C 
Sbjct: 132 FYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCK 191

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             + D A   F  MS  G   D V   +++S++C+   +   A E   R K    P    
Sbjct: 192 NDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCK-AGKIDDARELAGRFK----PSVPV 246

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  L++G  KEG +E A K  GEM++    +P +V++Y   + +L     V+ A      
Sbjct: 247 YNALIDGMCKEGRIEVAIKLLGEMMDN-GVDP-NVVSYSCIINSLCVSGNVELAFALFAQ 304

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M    C   +  F+  +           A+ LW  +M+  G  P+ + YN +   L  N 
Sbjct: 305 MFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWK-LMIQDGCEPNVVAYNTLIHGLCSNG 363

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            + E  +   +M ++   P     +  I     + +   A E WN ++ +G  P
Sbjct: 364 SLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRP 417



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 3/176 (1%)

Query: 73  ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
            C   + T  ++ +    S D   ++  + R    G R +   +  MVDVL KN  F+Q 
Sbjct: 379 GCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQA 438

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            + V  M  +G   +  TF +     CG G+ + A+   + M  HG   ++   N LL A
Sbjct: 439 NSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDA 498

Query: 192 ICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           + R  N+   A      ++ + + P+  ++  +L G+ + G + EA + FG+ + R
Sbjct: 499 LFRM-NKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVR 553



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 10/173 (5%)

Query: 258 ETFLITLIRGKQ----VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           E   I +I G +     ++ALK    +    C PT++ +++ LD L+  N       L+ 
Sbjct: 109 EDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYT 168

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
            M    G  P+  TYN++ + L KN RV    K F EM      P  +   T ++ L  A
Sbjct: 169 NMKK-DGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKA 227

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            + + A E     L     P     N L+ G+   GR+    +   EM++  +
Sbjct: 228 GKIDDARE-----LAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGV 275


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 158/369 (42%), Gaps = 39/369 (10%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R + Y + + + VLG+ G+ ++ +   R M ++G    L T+  + D+ C AG+ + A
Sbjct: 257 GLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENA 316

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLE 225
              F  M  +G + D V   +LL              EF ++++     PD  +F IL++
Sbjct: 317 KELFVKMKANGHKPDQVIYITLLDKF-NDFGDLDTFKEFWSQMEADGYMPDVVTFTILVD 375

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K  + +EA  TF  M  R +    ++  Y T +  L+R  ++++ALK L  M+    
Sbjct: 376 VLCKARDFDEAFATFDVM--RKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGV 433

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIM------------------------------ 315
            PT   +   +D   K  ++  AV+ ++ M                              
Sbjct: 434 QPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKT 493

Query: 316 ----MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
               +  +G  PDS+TYNM+ +C  K  +V E      EMI+N  +P  +   + I  L 
Sbjct: 494 MFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLY 553

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 431
            A   + A ++++ + +  + P   + N LL GL   GR+       E M+ ++     +
Sbjct: 554 KAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTI 613

Query: 432 TMHKLKKAF 440
           + + L   F
Sbjct: 614 SFNTLLDCF 622



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 161/356 (45%), Gaps = 46/356 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKY 163
           +  +LSP    +N ++  LGK GR ++       M  +    +  +F ++ D +C   + 
Sbjct: 569 KDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEV 628

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           + A+  F  M++   + DV+  N+++  + + EN+ + A  F +++KK + PD  +   L
Sbjct: 629 ELALKMFSKMTVMDCKPDVLTYNTVIYGLIK-ENKVNHAFWFFHQLKKSMHPDHVTICTL 687

Query: 224 LEGWEKEGNVEEA---------------NKTF------GEMVERFEWNPEHVLAYE---- 258
           L G  K G + +A               N++F      G +VE  E +   + A E    
Sbjct: 688 LPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEA-EMDKAIIFAEELVLN 746

Query: 259 ------TFLITLIR-----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
                 +FLI L+R      +++     F +  K     PTL  ++  +  L++++ +  
Sbjct: 747 GICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEK 806

Query: 308 AVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
           A   WD+   M   G  PD+ T+NM+     K+ ++ E+ + + EMI    +P  +    
Sbjct: 807 A---WDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNI 863

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            I+ L  ++  + A++ +  ++ +   P   +   L+ GL  +GRL +  R  EEM
Sbjct: 864 VISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEM 919



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 107/253 (42%), Gaps = 5/253 (1%)

Query: 170  FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
            F  M   G   D    N LL+   +    T     +   + +   PD  ++ I++    K
Sbjct: 811  FKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAK 870

Query: 230  EGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
              N+++A   F ++V   F   P     Y   +  L +  +++EA++    M    C P 
Sbjct: 871  SNNLDKALDFFYDLVSSDFRPTPR---TYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPN 927

Query: 289  LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
               F+  ++   K+ D+  A QL+   MV  G  PD  +Y ++ +CL    RV E   +F
Sbjct: 928  CAIFNILINGYGKIGDTETACQLFK-RMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYF 986

Query: 349  HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            +E+      P  +     I  L  +   E A+ ++N +   GI+P   + N L++ L   
Sbjct: 987  NELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLA 1046

Query: 409  GRLSDVRRFAEEM 421
            G +   +R  EE+
Sbjct: 1047 GMVEQAKRMYEEL 1059



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 155/379 (40%), Gaps = 52/379 (13%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           R   L+P    +N+M+    K G+ ++  N +  M  +G    +    S+ DS   AG+ 
Sbjct: 499 RENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRV 558

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAI 222
           DEA   FD M    +   VV  N+LLS +  +E +  +A+E F + + K   P+  SF  
Sbjct: 559 DEAWQMFDRMKDMKLSPTVVTYNTLLSGL-GKEGRVQKAIELFESMIXKKCSPNTISFNT 617

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL+ + K   VE A K F +M    +  P+ VL Y T +  LI+  +V+ A  F   +K 
Sbjct: 618 LLDCFCKNDEVELALKMFSKMT-VMDCKPD-VLTYNTVIYGLIKENKVNHAFWFFHQLK- 674

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQL----------------WDIMMVFHGA----- 321
           ++  P        L  LVK      A+ +                W+ +M   G      
Sbjct: 675 KSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLM--GGTLVEAE 732

Query: 322 ------FPDSLTYNMI----------FECLIKNKRVHEVEKFFHEMIKN-EWQPTPLNCA 364
                 F + L  N I             L K+KR     + F +  K     PT  +  
Sbjct: 733 MDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYN 792

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             I  LL+    E A +++  +   G  P   + N LL      G+++++    +EM++R
Sbjct: 793 CLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISR 852

Query: 425 RI----LIYEVTMHKLKKA 439
           R     + Y + +  L K+
Sbjct: 853 RCKPDAITYNIVISSLAKS 871



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 84/191 (43%), Gaps = 2/191 (1%)

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A + F +  ++   +P  + +Y   +  L+     ++A    + MK   C P    F+  
Sbjct: 771 AYQIFDKFTKKLGISPT-LASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNML 829

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           L +  K    T   +L+   M+     PD++TYN++   L K+  + +   FF++++ ++
Sbjct: 830 LAVHGKSGKITELFELYK-EMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSD 888

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
           ++PTP      I  L      E A+ ++  + + G  P  A  N L+ G   +G      
Sbjct: 889 FRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETAC 948

Query: 416 RFAEEMLNRRI 426
           +  + M+N  I
Sbjct: 949 QLFKRMVNEGI 959



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 134/324 (41%), Gaps = 53/324 (16%)

Query: 53   ARIIC----EILAHASSDDIESALACTGIIPTPD----LVHEVLQLSYDSPSSAVDFFR- 103
             R++C    E+ A+   D     L   GI PT      L+ E+L++ Y     A D F+ 
Sbjct: 759  VRVLCKHKRELYAYQIFDKFTKKL---GISPTLASYNCLIGELLEVHY--TEKAWDLFKD 813

Query: 104  WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-----KEDGVL------SLP---- 148
                G     + +N+++ V GK+G+  +++   + M     K D +       SL     
Sbjct: 814  MKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNN 873

Query: 149  ---------------------TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
                                 T+  + D     G+ +EA+  F+ MS +G + +    N 
Sbjct: 874  LDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNI 933

Query: 188  LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
            L++   +  +  +    F   V + + PD  S+ IL++     G V+EA   F E+ +  
Sbjct: 934  LINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNEL-KST 992

Query: 248  EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
              +P+ + AY   +  L + ++++EAL     M+     P L  +++ +  L        
Sbjct: 993  GLDPDFI-AYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQ 1051

Query: 308  AVQLWDIMMVFHGAFPDSLTYNMI 331
            A ++++ + +  G  PD  TYN +
Sbjct: 1052 AKRMYEELQL-AGLEPDVFTYNAL 1074



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 9/235 (3%)

Query: 98   AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
            A+DFF        R +P  +  ++D L K GR E+       M + G   +   F  + +
Sbjct: 877  ALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILIN 936

Query: 156  SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
             Y   G  + A   F  M   G+  D+ +   L+  +C    +   AL + N +K   +D
Sbjct: 937  GYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLA-GRVDEALYYFNELKSTGLD 995

Query: 215  PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
            PD  ++  ++ G  K   +EEA   + EM  R    P+ +  Y + ++ L     V++A 
Sbjct: 996  PDFIAYNRIINGLGKSQRMEEALALYNEMRNR-GIVPD-LYTYNSLMLNLGLAGMVEQAK 1053

Query: 275  KFLRVMKGENCFPTLKFFSNALDILVKLNDS-THAVQLWDIMMVFHGAFPDSLTY 328
            +    ++     P + F  NAL     L+++  HA  ++  MMV  G  P+  TY
Sbjct: 1054 RMYEELQLAGLEPDV-FTYNALIRGYSLSENPEHAYTVYKNMMV-DGCNPNIGTY 1106



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
             EF+   KKI+  D D++  + +     G + +      +M  R      +  +Y   +
Sbjct: 144 VFEFMQ--KKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKM--RKAGFVLNAYSYNGLI 199

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             LI+     EAL+  R M  E   P+LK +S  +  L K  DS   + L   M    G 
Sbjct: 200 HLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDL-GL 258

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            P+  T+ +    L +  ++ E  + F  M      P  +     I  L +A + E A E
Sbjct: 259 RPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKE 318

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           ++  +  NG  P +     LL    + G L   + F  +M
Sbjct: 319 LFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQM 358



 Score = 39.3 bits (90), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 1/110 (0%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            A+N +++ LGK+ R E+       M+  G++  L T+ S+  +   AG  ++A   ++ +
Sbjct: 1000 AYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEEL 1059

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
             + G+E DV   N+L+      EN       + N +    +P+  ++A L
Sbjct: 1060 QLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 151/376 (40%), Gaps = 41/376 (10%)

Query: 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGA 160
            R AG G  +  Y  N +V    + G  +     V +M+E G+  +L TF S+ +  C A
Sbjct: 216 MRGAGCGPNVVTY--NTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKA 273

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           GK ++A   FD M   G+  D V+ N+L+   C+          F    +K + PD  +F
Sbjct: 274 GKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTF 333

Query: 221 AILLEGWEKEGNVEEANKTFGEMVER-FEWN----------------------------- 250
             L+    K GN+E A     +M ER  + N                             
Sbjct: 334 TSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQ 393

Query: 251 ---PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
                 V+ Y   +       ++DEA + L  M+ +   P +  +S  +    K N  TH
Sbjct: 394 CRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCK-NCDTH 452

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
           +    +  M+  G  PD++TY+ +   L   KR+ +    F  MIK   QP      + I
Sbjct: 453 SAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLI 512

Query: 368 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
                    E A+ + + +++ G+LP   + + L+ GL    R  + ++   ++ +   +
Sbjct: 513 DGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPI 572

Query: 428 ----IYEVTMHKLKKA 439
                Y+  MH  +KA
Sbjct: 573 PANTKYDALMHCCRKA 588



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 126/320 (39%), Gaps = 39/320 (12%)

Query: 139 MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-E 196
           M  DGV  ++ T+  +  + CG G   EA+     M   G   +VV  N+L++A  R  E
Sbjct: 181 MLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGE 240

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
              +  L  + R +  + P+  +F  ++ G  K G +E+A K F EMV R    P+ V +
Sbjct: 241 VDGAERLVGMMR-EGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMV-REGLAPDGV-S 297

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW---- 312
           Y T +    +     EAL     M  +   P +  F++ + ++ K  +   AV L     
Sbjct: 298 YNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMR 357

Query: 313 -------------------------DIMMVFHGA-----FPDSLTYNMIFECLIKNKRVH 342
                                    D ++   G       P  + YN +        R+ 
Sbjct: 358 ERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMD 417

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E  +  HEM     +P  +  +T I+      +   A E+   +LE G+LP   + + L+
Sbjct: 418 EARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLI 477

Query: 403 VGLRNLGRLSDVRRFAEEML 422
             L    RLSD     + M+
Sbjct: 478 RVLCGEKRLSDAHVLFKNMI 497



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 8/220 (3%)

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           + ++  A + F  M+   +    +V  Y   +  L       EAL  LR M+G  C P +
Sbjct: 168 DASLTSARRFFDSMLS--DGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNV 225

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             ++  +    +  +   A +L   MM   G  P+ +T+N +   + K  ++ +  K F 
Sbjct: 226 VTYNTLVAAFFRAGEVDGAERLVG-MMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFD 284

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM++    P  ++  T +     A     A+ ++  + + GI+P   +   L+  +   G
Sbjct: 285 EMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAG 344

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKL-----KKAFYNES 444
            L        +M  R + + EVT   L     KK F +++
Sbjct: 345 NLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDA 384



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 3/127 (2%)

Query: 298 ILVKLNDS--THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           +L+ L+D+  T A + +D M+   G  P+  TYN++   L       E      +M    
Sbjct: 162 VLLALSDASLTSARRFFDSMLS-DGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAG 220

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
             P  +   T +     A E + A  +   + E G+ P   + N ++ G+   G++ D R
Sbjct: 221 CGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDAR 280

Query: 416 RFAEEML 422
           +  +EM+
Sbjct: 281 KVFDEMV 287


>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Brachypodium distachyon]
          Length = 642

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 128/319 (40%), Gaps = 7/319 (2%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYD 164
           A +G R    +   ++  L K  R ++    +  M   G     ++ ++  + CG  +  
Sbjct: 189 ARKGCRPDEVSHTTIISALCKLDRLDEARGILAEMTPVGA----SYNAVVHALCGQFRMR 244

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           E  +  D M   G+  D VA  S++ A C+              V +   P+  +F +L+
Sbjct: 245 EVFLVVDEMVHRGLRPDTVAYTSIVGAFCKARELRMACAILARMVTEGCVPNVQTFTVLV 304

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G+  +G V +A   +  MV    W P   ++Y   +  L     +  AL     M   +
Sbjct: 305 KGFFDDGKVHDALGMWNWMVAE-GWAPS-TISYNVLIRGLCHIGDLKRALFVFSCMGKSD 362

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C P ++ +S  +D   K  D   A+ +W+ M    G  P+ + Y  + + L K     + 
Sbjct: 363 CLPDVRTYSTLIDGFSKAGDLDVAMSIWNDM-TNAGCKPNVVVYTNMVDVLCKKVMFDQA 421

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
           E    +M      P  L   T I  L D      A+ +++ +   G  P + + NELL G
Sbjct: 422 ENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHG 481

Query: 405 LRNLGRLSDVRRFAEEMLN 423
           L   G   D  R   EMLN
Sbjct: 482 LFREGNCEDALRMLTEMLN 500



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 123/289 (42%), Gaps = 6/289 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAV--RVMKEDGVLSLPTFASIFDSYCGAGKYD 164
           RG R    A+  +V    K  R  +M  A+  R++ E  V ++ TF  +   +   GK  
Sbjct: 256 RGLRPDTVAYTSIVGAFCK-ARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDGKVH 314

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           +A+  ++ M   G     ++ N L+  +C   +       F    K    PD  +++ L+
Sbjct: 315 DALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLI 374

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G+ K G+++ A   + +M         +V+ Y   +  L +    D+A   +  M  EN
Sbjct: 375 DGFSKAGDLDVAMSIWNDMTN--AGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLEN 432

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C P    F+  +  L  L  +  A+ ++  M  + G  P+  TYN +   L +     + 
Sbjct: 433 CPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRY-GCPPNDRTYNELLHGLFREGNCEDA 491

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            +   EM+ + ++ + ++  T I+ L      + A+ +   ++  GI P
Sbjct: 492 LRMLTEMLNHGFELSLVSYNTTISGLCQMRMIKEAMILLGRMIIQGIQP 540



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 98/253 (38%), Gaps = 31/253 (12%)

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWE 228
           +D M   GVE +V   N L+ A+C Q ++   A   L+ + +K   PD  S   ++    
Sbjct: 150 YDNMRKAGVEPNVYTYNLLIKALC-QNDRVGAARRMLDEMARKGCRPDEVSHTTIISALC 208

Query: 229 KEGNVEEANKTFGEMV--------------------ERFEWNPEHV--------LAYETF 260
           K   ++EA     EM                     E F    E V        +AY + 
Sbjct: 209 KLDRLDEARGILAEMTPVGASYNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSI 268

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +    + +++  A   L  M  E C P ++ F+  +           A+ +W+  MV  G
Sbjct: 269 VGAFCKARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDGKVHDALGMWN-WMVAEG 327

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             P +++YN++   L     +      F  M K++  P     +T I     A + ++A+
Sbjct: 328 WAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAM 387

Query: 381 EIWNYILENGILP 393
            IWN +   G  P
Sbjct: 388 SIWNDMTNAGCKP 400



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/381 (19%), Positives = 150/381 (39%), Gaps = 18/381 (4%)

Query: 30  HNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ 89
           H   RP    + + + A   +   R+ C ILA   ++         G +P       +++
Sbjct: 255 HRGLRPDTVAYTSIVGAFCKARELRMACAILARMVTE---------GCVPNVQTFTVLVK 305

Query: 90  LSYDSPS--SAVDFFRW-AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVL 145
             +D      A+  + W    G   S  ++N+++  L   G  ++       M K D + 
Sbjct: 306 GFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLP 365

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
            + T++++ D +  AG  D A+  ++ M+  G + +VV   +++  +C++     +A   
Sbjct: 366 DVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKV-MFDQAENL 424

Query: 206 LNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           ++++  +   P+  +F  L+      G    A   F  M  R    P +   Y   L  L
Sbjct: 425 IDKMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGM--RRYGCPPNDRTYNELLHGL 482

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            R    ++AL+ L  M       +L  ++  +  L ++     A+ L    M+  G  PD
Sbjct: 483 FREGNCEDALRMLTEMLNHGFELSLVSYNTTISGLCQMRMIKEAMILLG-RMIIQGIQPD 541

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
           + T+N I     K   V         M         +   + ++ L    + + A+    
Sbjct: 542 AFTFNAIIHAYCKEGNVRAAAWMLGRMDAVNCPRNIVAYTSLMSGLCSQHKLDDAMVYLL 601

Query: 385 YILENGILPLEASANELLVGL 405
            +L  GI P EA+ N L+ G+
Sbjct: 602 KMLYEGICPNEATWNVLVRGI 622


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 143/343 (41%), Gaps = 11/343 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           F   + +G       +  MV  L K G+ +         K     S+P + ++ D  C  
Sbjct: 202 FVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKP----SVPVYNALIDGMCKE 257

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G+ + A+     M  +GV+ +VV+ + +++++C   N       F     +  D +  +F
Sbjct: 258 GRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTF 317

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L++G    G + EA   +  M++  +    +V+AY T +  L     ++EAL+    M
Sbjct: 318 TPLIKGCFMRGKLYEALDLWKLMIQ--DGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQM 375

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
           +   C P +  +S  +D   K  D   A + W+  M+ HG  P+ +TY  + + L KN  
Sbjct: 376 QRSGCLPNVTTYSILIDGFAKSGDLVGASETWN-RMISHGCRPNVVTYTCMVDVLCKNSM 434

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
             +      +M      P  +   T I  L      E A+++   +  +G LP   + NE
Sbjct: 435 FDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNE 494

Query: 401 LLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKA 439
           LL  L  + +  +     +E+    L   ++ Y   ++   +A
Sbjct: 495 LLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRA 537



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 154/379 (40%), Gaps = 43/379 (11%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           PD V     +S    +  +D  R  AGR +   P  +N ++D + K GR E     +  M
Sbjct: 212 PDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVP-VYNALIDGMCKEGRIEVAIKLLGEM 270

Query: 140 KEDGV---------------------LSLPTFASIFDSYCGA---------------GKY 163
            ++GV                     L+   FA +F   C A               GK 
Sbjct: 271 MDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKL 330

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            EA+  + +M   G E +VVA N+L+  +C        AL+  +++++    P+  +++I
Sbjct: 331 YEALDLWKLMIQDGCEPNVVAYNTLIHGLC-SNGSLEEALQVCDQMQRSGCLPNVTTYSI 389

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G+ K G++  A++T+  M+      P +V+ Y   +  L +    D+A   +  M  
Sbjct: 390 LIDGFAKSGDLVGASETWNRMISH-GCRP-NVVTYTCMVDVLCKNSMFDQANSLVEKMTL 447

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           E C P    F+  +  L        A++L + M   HG  P+  TYN + + L +  +  
Sbjct: 448 EGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQ-GHGCLPNITTYNELLDALFRMNKYE 506

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E    F E+     QP  +   T +     A     A++++   L  G  P   + N ++
Sbjct: 507 EAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMI 566

Query: 403 VGLRNLGRLSDVRRFAEEM 421
                 G++    +  E +
Sbjct: 567 HAYCKQGKVKIAAQLVERV 585



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 126/294 (42%), Gaps = 9/294 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F+R    G + +   +N ++D L    +F+ +      MK+DG++ ++ T+  +  + C 
Sbjct: 132 FYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCK 191

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             + D A   F  MS  G   D V   +++S++C+   +   A E   R K    P    
Sbjct: 192 NDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCK-AGKIDDARELAGRFK----PSVPV 246

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  L++G  KEG +E A K  GEM++    +P +V++Y   + +L     V+ A      
Sbjct: 247 YNALIDGMCKEGRIEVAIKLLGEMMDN-GVDP-NVVSYSCIINSLCVSGNVELAFALFAQ 304

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M    C   +  F+  +           A+ LW  +M+  G  P+ + YN +   L  N 
Sbjct: 305 MFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWK-LMIQDGCEPNVVAYNTLIHGLCSNG 363

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            + E  +   +M ++   P     +  I     + +   A E WN ++ +G  P
Sbjct: 364 SLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRP 417



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 3/176 (1%)

Query: 73  ACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
            C   + T  ++ +    S D   ++  + R    G R +   +  MVDVL KN  F+Q 
Sbjct: 379 GCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQA 438

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            + V  M  +G   +  TF +     CG G+ + A+   + M  HG   ++   N LL A
Sbjct: 439 NSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDA 498

Query: 192 ICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           + R  N+   A      ++ + + P+  ++  +L G+ + G + EA + FG+ + R
Sbjct: 499 LFRM-NKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVR 553



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 10/173 (5%)

Query: 258 ETFLITLIRGKQ----VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           E   I +I G +     ++ALK    +    C PT++ +++ LD L+  N       L+ 
Sbjct: 109 EDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYT 168

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
            M    G  P+  TYN++ + L KN RV    K F EM      P  +   T ++ L  A
Sbjct: 169 NMKK-DGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKA 227

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            + + A E     L     P     N L+ G+   GR+    +   EM++  +
Sbjct: 228 GKIDDARE-----LAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGV 275


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 159/369 (43%), Gaps = 39/369 (10%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R + Y + + + VLG+ G+ ++ +   R M ++G    L T+  + D+ C AG+ + A
Sbjct: 257 GLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENA 316

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLE 225
              F  M  +G + D V   +LL              EF ++++     PD  +F IL++
Sbjct: 317 KELFVKMKANGHKPDQVIYITLLDKF-NDFGDLDTFKEFWSQMEADGYMPDVVTFTILVD 375

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K  + +EA  TF  M  R +    ++  Y T +  L+R  ++++ALK L  M+    
Sbjct: 376 VLCKARDFDEAFATFDVM--RKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGV 433

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIM------------------------------ 315
            PT   ++  +D   K  ++  AV+ ++ M                              
Sbjct: 434 QPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKT 493

Query: 316 ----MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
               +  +G  PDS+TYNM+ +C  K  +V E      EMI+N  +P  +   + I  L 
Sbjct: 494 MFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLY 553

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 431
            A   + A ++++ + +  + P   + N LL GL   GR+       E M+ ++     +
Sbjct: 554 KAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTI 613

Query: 432 TMHKLKKAF 440
           + + L   F
Sbjct: 614 SFNTLLDCF 622



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 161/356 (45%), Gaps = 46/356 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +  +LSP    +N ++  LGK GR ++       M E     +  +F ++ D +C   + 
Sbjct: 569 KDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEV 628

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           + A+  F  M++   + DV+  N+++  + + EN+ + A  F +++KK + PD  +   L
Sbjct: 629 ELALKMFSKMTVMDCKPDVLTYNTVIYGLIK-ENKVNHAFWFFHQLKKSMHPDHVTICTL 687

Query: 224 LEGWEKEGNVEEA---------------NKTF------GEMVERFEWNPEHVLAYE---- 258
           L G  K G + +A               N++F      G +VE  E +   + A E    
Sbjct: 688 LPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEA-EMDKAIIFAEELVLN 746

Query: 259 ------TFLITLIR-----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
                 +FLI L+R      +++     F +  K     PTL  ++  +  L++++ +  
Sbjct: 747 GICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEK 806

Query: 308 AVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
           A   WD+   M   G  PD+ T+NM+     K+ ++ E+ + + EMI    +P  +    
Sbjct: 807 A---WDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNI 863

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            I+ L  ++  + A++ +  ++ +   P   +   L+ GL  +GRL +  R  EEM
Sbjct: 864 VISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEM 919



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 153/365 (41%), Gaps = 7/365 (1%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+H ++Q  +   +  V + R    G + S   ++ ++  LGK    E +   ++ M++ 
Sbjct: 198 LIHLLIQSGFCGEALEV-YRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDL 256

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           G+  ++ TF         AGK DEA   F  M   G   D+V    L+ A+C    Q   
Sbjct: 257 GLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALC-NAGQLEN 315

Query: 202 ALEFLNRVKKIV-DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           A E   ++K     PD   +  LL+ +   G+++   K F   +E   + P+ V+ +   
Sbjct: 316 AKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTF-KEFWSQMEADGYMPD-VVTFTIL 373

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +  L + +  DEA     VM+ +   P L  ++  +  L++      A++L   M    G
Sbjct: 374 VDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESV-G 432

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             P + TYN+  +   K+    +  + F +M      P  + C  ++  L +      A 
Sbjct: 433 VQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAK 492

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
            ++N + ENG+ P   + N ++     +G++ +      EM+        + ++ L  + 
Sbjct: 493 TMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSL 552

Query: 441 YNESR 445
           Y   R
Sbjct: 553 YKAGR 557



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 107/253 (42%), Gaps = 5/253 (1%)

Query: 170  FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
            F  M   G   D    N LL+   +    T     +   + +   PD  ++ I++    K
Sbjct: 811  FKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAK 870

Query: 230  EGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
              N+++A   F ++V   F   P     Y   +  L +  +++EA++    M    C P 
Sbjct: 871  SNNLDKALDFFYDLVSSDFRPTPR---TYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPN 927

Query: 289  LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
               F+  ++   K+ D+  A QL+   MV  G  PD  +Y ++ +CL    RV E   +F
Sbjct: 928  CAIFNILINGYGKIGDTETACQLFK-RMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYF 986

Query: 349  HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            +E+      P  +     I  L  +   E A+ ++N +   GI+P   + N L++ L   
Sbjct: 987  NELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLA 1046

Query: 409  GRLSDVRRFAEEM 421
            G +   +R  EE+
Sbjct: 1047 GMVEQAKRMYEEL 1059



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 156/379 (41%), Gaps = 52/379 (13%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           R   L+P    +N+M+    K G+ ++  N +  M  +G    +    S+ DS   AG+ 
Sbjct: 499 RENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRV 558

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAI 222
           DEA   FD M    +   VV  N+LLS +  +E +  +A+E F + ++K   P+  SF  
Sbjct: 559 DEAWQMFDRMKDMKLSPTVVTYNTLLSGL-GKEGRVQKAIELFESMIEKKCSPNTISFNT 617

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL+ + K   VE A K F +M    +  P+ VL Y T +  LI+  +V+ A  F   +K 
Sbjct: 618 LLDCFCKNDEVELALKMFSKMT-VMDCKPD-VLTYNTVIYGLIKENKVNHAFWFFHQLK- 674

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQL----------------WDIMMVFHGA----- 321
           ++  P        L  LVK      A+ +                W+ +M   G      
Sbjct: 675 KSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLM--GGTLVEAE 732

Query: 322 ------FPDSLTYNMI----------FECLIKNKRVHEVEKFFHEMIKN-EWQPTPLNCA 364
                 F + L  N I             L K+KR     + F +  K     PT  +  
Sbjct: 733 MDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYN 792

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             I  LL+    E A +++  +   G  P   + N LL      G+++++    +EM++R
Sbjct: 793 CLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISR 852

Query: 425 RI----LIYEVTMHKLKKA 439
           R     + Y + +  L K+
Sbjct: 853 RCKPDAITYNIVISSLAKS 871



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 84/191 (43%), Gaps = 2/191 (1%)

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A + F +  ++   +P  + +Y   +  L+     ++A    + MK   C P    F+  
Sbjct: 771 AYQIFDKFTKKLGISPT-LASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNML 829

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           L +  K    T   +L+   M+     PD++TYN++   L K+  + +   FF++++ ++
Sbjct: 830 LAVHGKSGKITELFELYK-EMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSD 888

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
           ++PTP      I  L      E A+ ++  + + G  P  A  N L+ G   +G      
Sbjct: 889 FRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETAC 948

Query: 416 RFAEEMLNRRI 426
           +  + M+N  I
Sbjct: 949 QLFKRMVNEGI 959



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 134/324 (41%), Gaps = 53/324 (16%)

Query: 53   ARIIC----EILAHASSDDIESALACTGIIPTPD----LVHEVLQLSYDSPSSAVDFFR- 103
             R++C    E+ A+   D     L   GI PT      L+ E+L++ Y     A D F+ 
Sbjct: 759  VRVLCKHKRELYAYQIFDKFTKKL---GISPTLASYNCLIGELLEVHY--TEKAWDLFKD 813

Query: 104  WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-----KEDGVL------SLP---- 148
                G     + +N+++ V GK+G+  +++   + M     K D +       SL     
Sbjct: 814  MKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNN 873

Query: 149  ---------------------TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
                                 T+  + D     G+ +EA+  F+ MS +G + +    N 
Sbjct: 874  LDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNI 933

Query: 188  LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
            L++   +  +  +    F   V + + PD  S+ IL++     G V+EA   F E+ +  
Sbjct: 934  LINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNEL-KST 992

Query: 248  EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
              +P+ + AY   +  L + ++++EAL     M+     P L  +++ +  L        
Sbjct: 993  GLDPDFI-AYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQ 1051

Query: 308  AVQLWDIMMVFHGAFPDSLTYNMI 331
            A ++++ + +  G  PD  TYN +
Sbjct: 1052 AKRMYEELQL-AGLEPDVFTYNAL 1074



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 9/235 (3%)

Query: 98   AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
            A+DFF        R +P  +  ++D L K GR E+       M + G   +   F  + +
Sbjct: 877  ALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILIN 936

Query: 156  SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
             Y   G  + A   F  M   G+  D+ +   L+  +C    +   AL + N +K   +D
Sbjct: 937  GYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLA-GRVDEALYYFNELKSTGLD 995

Query: 215  PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
            PD  ++  ++ G  K   +EEA   + EM  R    P+ +  Y + ++ L     V++A 
Sbjct: 996  PDFIAYNRIINGLGKSQRMEEALALYNEMRNR-GIVPD-LYTYNSLMLNLGLAGMVEQAK 1053

Query: 275  KFLRVMKGENCFPTLKFFSNALDILVKLNDS-THAVQLWDIMMVFHGAFPDSLTY 328
            +    ++     P + F  NAL     L+++  HA  ++  MMV  G  P+  TY
Sbjct: 1054 RMYEELQLAGLEPDV-FTYNALIRGYSLSENPEHAYTVYKNMMV-DGCNPNIGTY 1106



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 87/220 (39%), Gaps = 5/220 (2%)

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
             EF+   KKI+  D D++  + +     G + +      +M  R      +  +Y   +
Sbjct: 144 VFEFMQ--KKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKM--RKAGFVLNAYSYNGLI 199

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             LI+     EAL+  R M  E   P+LK +S  +  L K  DS   + L   M    G 
Sbjct: 200 HLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDL-GL 258

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            P+  T+ +    L +  ++ E  + F  M      P  +     I  L +A + E A E
Sbjct: 259 RPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKE 318

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           ++  +  NG  P +     LL    + G L   + F  +M
Sbjct: 319 LFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQM 358



 Score = 39.3 bits (90), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 1/110 (0%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            A+N +++ LGK+ R E+       M+  G++  L T+ S+  +   AG  ++A   ++ +
Sbjct: 1000 AYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEEL 1059

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
             + G+E DV   N+L+      EN       + N +    +P+  ++A L
Sbjct: 1060 QLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/323 (19%), Positives = 152/323 (47%), Gaps = 8/323 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT---FASIFDSYCGAGKY 163
           +G  L  Y  +++++ L K+G+  +      ++   G++  PT   + ++ + YC     
Sbjct: 328 KGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLV--PTTVIYNTLINGYCQVRDL 385

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
             A   F+ M    +  D +  N+L++ +C+ E  T      +   K  VDP  ++F  L
Sbjct: 386 RGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTL 445

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++ +   G +E+      +M ++       V+++ + +    +  ++ EA+  L  M  +
Sbjct: 446 IDAYGTAGQLEKCFTVLSDMQQK--GIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYK 503

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
           +  P  + +++ +D  ++  D+  A+ L +  M   G     +TYN++ + L ++ ++ E
Sbjct: 504 DVAPNAQVYNSIIDAYIESGDTEQALLLVE-KMKNSGVSASIVTYNLLLKGLCRSSQIDE 562

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
            E+  + +     +P  ++  T I+   +  + + A+E+   + + GI P   + + L+ 
Sbjct: 563 AEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVS 622

Query: 404 GLRNLGRLSDVRRFAEEMLNRRI 426
            L + GR+ D+    ++ML++ +
Sbjct: 623 ALASAGRVHDMECLYQQMLHKNV 645



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 119/296 (40%), Gaps = 10/296 (3%)

Query: 147 LPTFAS---IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           LP+ +S   + +S    G++ +   +F ++   G   D  A N ++ A C        AL
Sbjct: 119 LPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQA-CVAAGDLDVAL 177

Query: 204 EFLNRVKK---IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
             L R+ +      PD  S+ +++ G  + G   +A K F EMV+     P  +  Y T 
Sbjct: 178 AMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVD-MGVAPNRI-TYNTM 235

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +   ++G  ++   +    M  +   P +  ++  L  L +         L D  M  H 
Sbjct: 236 IDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMD-EMASHS 294

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD  TY+++F+ L +      +   F E +K         C+  +  L    +   A 
Sbjct: 295 MLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAK 354

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           +++  ++  G++P     N L+ G   +  L       E+M +R I    +T + L
Sbjct: 355 QVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNAL 410



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 7/139 (5%)

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           PD+ +YN++   L ++ +  +  K F EM+     P  +   T I   +   + E    +
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRL 251

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL----IYEVTMHKLKK 438
            + +L +G  P   + N LL GL   GR+ + R   +EM +  +L     Y +    L +
Sbjct: 252 RDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTR 311

Query: 439 AFYNESRSMRDIF-DSLER 456
               ES++M  +F +SL++
Sbjct: 312 T--GESQTMLSLFAESLKK 328


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 166/395 (42%), Gaps = 14/395 (3%)

Query: 33  HRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY 92
           +RP    + T L+   ++ +      +LA    +++ +     G+   P+LV     +  
Sbjct: 193 YRPNVVTYGTLLNGLCMTGNT-----MLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDS 247

Query: 93  DSPSSAVD-----FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-S 146
                 +D     F    GRG      A++ ++  +   GR+E        M ++GV  +
Sbjct: 248 LCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPN 307

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           + TF  + D+ C AGK +EA     +M   G   D    N+L+   C +         F+
Sbjct: 308 VVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFV 367

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           +   K ++ D  S+ +L+ G+ K G + EA K + EM+ + E  P  V+ Y T L  L R
Sbjct: 368 SMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCK-EIMPT-VITYNTLLTGLFR 425

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
             +V +A      MK  +  P    ++  LD L K N  + A++L+  +   H   P   
Sbjct: 426 EGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLEN-HDFQPSIQ 484

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
            +N + + L K +++    + F+ +     +P  +     I  L  + + E A +++  +
Sbjct: 485 IFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGM 544

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            E G  P   + N L+ G      +  V    +EM
Sbjct: 545 EEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEM 579



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 137/330 (41%), Gaps = 38/330 (11%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L  + +I DS C  G  D+    F  M   G+  DVVA +S++  +C           F
Sbjct: 237 NLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLF 296

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER------FEWNP-------- 251
              V + V P+  +F +L++   K G +EEAN     M++R      F +N         
Sbjct: 297 NEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLE 356

Query: 252 -------------------EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
                                 ++Y   +    +  ++ EA K  R M  +   PT+  +
Sbjct: 357 GRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITY 416

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  L  L +      A  L+  M V H   P+S TYN++ + L KN  + E  + FH + 
Sbjct: 417 NTLLTGLFREGKVRDAWNLFGEMKV-HDLTPESCTYNILLDGLCKNNHLSEAMELFHYLE 475

Query: 353 KNEWQPT--PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
            +++QP+    NC   I  L  A + EIA E++N +   G+ P   +   ++ GL   G+
Sbjct: 476 NHDFQPSIQIFNC--LIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQ 533

Query: 411 LSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           L + +     M  +      VT + L + F
Sbjct: 534 LENAKDLFLGMEEKGCAPNLVTFNTLMRGF 563



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 141/338 (41%), Gaps = 14/338 (4%)

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVLSL-PTFASI---FDSYCGAGKYDEAVMSFDVMSMHG 177
           +LG   + ++ ++ + + K   ++ L P F ++    + YC   K D  +     M   G
Sbjct: 98  LLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRG 157

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEA 236
              + V   SL+  +C   ++ S A   L + V+    P+  ++  LL G    GN   A
Sbjct: 158 HSPNTVTFTSLVKGLCLG-SRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLA 216

Query: 237 NKTFGEMVE-----RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            K   EM+           P +++ Y T + +L +   +D+  +    MKG    P +  
Sbjct: 217 VKLHEEMLNGNGGFGVTIKP-NLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVA 275

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S+ +  +        A  L++  MV  G  P+ +T+N++ + L K  ++ E       M
Sbjct: 276 YSSIIHGMCHTGRWEGAKGLFN-EMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLM 334

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           I+    P      T I         + A +++  +   GI     S N L+ G    GR+
Sbjct: 335 IQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRM 394

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD 449
            + ++   EM+ + I+   +T + L    + E + +RD
Sbjct: 395 VEAKKLYREMMCKEIMPTVITYNTLLTGLFREGK-VRD 431



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 135/319 (42%), Gaps = 19/319 (5%)

Query: 152 SIFDSYCGAG--KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           +   S C +G  K  EA   F+ +        + + N+LL A+ +      R  + ++  
Sbjct: 60  NFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAK----IKRYFDVISLY 115

Query: 210 KKI----VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           K++    + PD  +  IL+  +     V+      GEM+ R   +  + + + + +  L 
Sbjct: 116 KRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRR--GHSPNTVTFTSLVKGLC 173

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF--- 322
            G ++ EA   LR M      P +  +   L+ L    ++  AV+L + M+  +G F   
Sbjct: 174 LGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVT 233

Query: 323 --PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             P+ + Y  I + L K+  + + ++ F EM      P  +  ++ I  +      E A 
Sbjct: 234 IKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAK 293

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
            ++N +++ G+ P   + N L+  L   G++ +     + M+ R       T + L   F
Sbjct: 294 GLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGF 353

Query: 441 YNESR--SMRDIFDSLERR 457
             E R    RD+F S+E +
Sbjct: 354 CLEGRIDDARDLFVSMESK 372


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 127/279 (45%), Gaps = 4/279 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L +NG FEQ+  A+  M E G    L  +A+I D  C  G ++ A      M 
Sbjct: 251 FNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMP 310

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            +G++ +VV  N++L  +C  E             ++    D  +F IL++ + + G V+
Sbjct: 311 SYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVD 370

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
              +   +M+E     P+ V+ Y T +    +   VDEA+  L+ M    C P    ++ 
Sbjct: 371 RVIELLEQMLEH-GCIPD-VITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTI 428

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            L  L +      A +L    M+  G  P+ +T+N +   + K   V +  +   +M+ N
Sbjct: 429 VLKGLCRAERWVDAQELIS-HMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVN 487

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
              P  ++ +T I  L  A + E A+E+ N ++  GI P
Sbjct: 488 GCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITP 526



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 152/335 (45%), Gaps = 8/335 (2%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAG 161
           R    G + +   +N ++  L    R+E+  + +  M +ED  L   TF  + D +C  G
Sbjct: 308 RMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNG 367

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
             D  +   + M  HG   DV+   ++++  C+ E     A+  L  +      P+  S+
Sbjct: 368 LVDRVIELLEQMLEHGCIPDVITYTTVINGFCK-EGLVDEAVMLLKNMSACGCKPNTISY 426

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEW-NPEHVLAYETFLITLIRGKQVDEALKFLRV 279
            I+L+G  +     +A +    M+++    NP   + + T +  + +   V++A++ L+ 
Sbjct: 427 TIVLKGLCRAERWVDAQELISHMIQQGCLPNP---VTFNTLINFMCKKGLVEQAIELLKQ 483

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M    C P L  +S  +D L K   +  A++L ++M +  G  P+++ Y+ +   L +  
Sbjct: 484 MLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVM-INKGITPNTIIYSSMASALSREG 542

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           R  ++ + F  +     +         I+ L    E + AI+ + Y++ NG +P E++  
Sbjct: 543 RTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYT 602

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
            L+ GL + G + + +    E+ +RR +   +  H
Sbjct: 603 ILIRGLASEGLVREAQDLLSELCSRRAVRKHLVRH 637



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 102/280 (36%), Gaps = 38/280 (13%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS--RALEFL 206
           T+  I  S C  G   +A+   D M + G        + +L A CR     S  RAL+ L
Sbjct: 110 TYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVL 169

Query: 207 NRVKKIVDPDGDSF---AILLEGWEKEG--------------NVEEANKTFGEMVERFEW 249
           +     +D    +    AI  +G   EG              ++   N     +     W
Sbjct: 170 HAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRW 229

Query: 250 N--------------PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           +              P +V  + T +  L R    ++  + L  M    C P L+ ++  
Sbjct: 230 DDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATI 289

Query: 296 LDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
           +D + K  D  H V   DI+  M  +G  P+ + YN + + L   +R  E E    EM +
Sbjct: 290 IDGICK--DGHHEVA-NDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQ 346

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            +     +     +         +  IE+   +LE+G +P
Sbjct: 347 EDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIP 386



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 95/245 (38%), Gaps = 11/245 (4%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
            +++  S C AG+  +A  + D     G    VVA N++++  CR   Q + A      V
Sbjct: 47  LSALIRSLCAAGRTADAARALDT---AGDAAGVVAYNAMIAGYCRA-GQVAAARRLAAAV 102

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGK 268
              V P+  ++  ++      G + +A     EM  R     P         L    RG 
Sbjct: 103 P--VPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMC---HVILEAACRGG 157

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
               A++ L+V+  + C       +  +  + +       V+L   +  F G  PD ++Y
Sbjct: 158 GFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSF-GCEPDIVSY 216

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N + + L   KR  +VE+   EM++    P      T I  L      E   E  + + E
Sbjct: 217 NAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPE 276

Query: 389 NGILP 393
           +G  P
Sbjct: 277 HGCTP 281


>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 576

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 148/318 (46%), Gaps = 7/318 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RG +   Y +N++V  + K G  ++ +  V  +     L+L           G  +  E 
Sbjct: 245 RGLQPDMYTYNVIVRGMCKRGLVDRAFEFVSNLNTTPSLNLYNLLLKGLLNEGRWEAGER 304

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
           +MS   M + G E ++V  + L+S++CR + +   A++ L  +K K ++PD   +  L+ 
Sbjct: 305 LMSD--MIVKGCEPNIVTYSVLISSLCR-DGKAGEAVDVLRVMKEKGLNPDAYCYDPLIS 361

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + KEG V+ A     +M+    W P+ ++ Y T + +L +  + DEAL   + ++   C
Sbjct: 362 AFCKEGKVDLAIGFVDDMISA-GWLPD-IVNYNTIMGSLCKKGRADEALNIFKKLEEVGC 419

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    ++     L    D   A+ +  + M+ +G  PD +TYN +   L ++  V E  
Sbjct: 420 PPNASSYNTMFGALWSSGDKIRALTMI-LEMLSNGVDPDRITYNSLISSLCRDGMVDEAI 478

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
               +M + EWQPT ++    +  L  A     AIE+   +++NG  P E +   L+ G+
Sbjct: 479 GLLVDMERTEWQPTVISYNIVLLGLCKAHRIVDAIEVLAVMVDNGCQPNETTYTLLVEGV 538

Query: 406 RNLGRLSDVRRFAEEMLN 423
              G  S     A+ +++
Sbjct: 539 GYAGWRSYAVELAKSLVS 556



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 72/339 (21%), Positives = 140/339 (41%), Gaps = 44/339 (12%)

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
            +  C  GKY EA+   + M   G + DV+    L+  +   + +T +A+  +  +++  
Sbjct: 84  LNRLCKTGKYTEALYFLEQMVKRGYKPDVILCTKLIKGLFTSK-RTEKAVRVMEILEQYG 142

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           DPD  ++  ++ G+ +    + AN+    M  R  ++P+ V+ Y   + +L    ++D A
Sbjct: 143 DPDSFAYNAVISGFCRSDRFDAANRVILRMKYR-GFSPD-VVTYNILIGSLCARGKLDLA 200

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
           LK +  +  +NC PT+  ++  ++  +       A++L D MM   G  PD  TYN+I  
Sbjct: 201 LKVMDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMS-RGLQPDMYTYNVIVR 259

Query: 334 CLIKNKRVHEV--------------------------------EKFFHEMIKNEWQPTPL 361
            + K   V                                   E+   +MI    +P  +
Sbjct: 260 GMCKRGLVDRAFEFVSNLNTTPSLNLYNLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIV 319

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
             +  I+ L    +   A+++   + E G+ P     + L+      G++     F ++M
Sbjct: 320 TYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDM 379

Query: 422 LNRR----ILIYEVTMHKL-KKAFYNESRSMRDIFDSLE 455
           ++      I+ Y   M  L KK   +E+    +IF  LE
Sbjct: 380 ISAGWLPDIVNYNTIMGSLCKKGRADEA---LNIFKKLE 415



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/336 (19%), Positives = 134/336 (39%), Gaps = 37/336 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RG +        ++  L  + R E+    + ++++ G      + ++   +C + ++D A
Sbjct: 106 RGYKPDVILCTKLIKGLFTSKRTEKAVRVMEILEQYGDPDSFAYNAVISGFCRSDRFDAA 165

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLE 225
                 M   G   DVV  N L+ ++C +  +   AL+ ++++ +   +P   ++ IL+E
Sbjct: 166 NRVILRMKYRGFSPDVVTYNILIGSLCAR-GKLDLALKVMDQLLEDNCNPTVITYTILIE 224

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL-------- 277
                G++++A +   EM+ R    P+ +  Y   +  + +   VD A +F+        
Sbjct: 225 ATIIHGSIDDAMRLLDEMMSR-GLQPD-MYTYNVIVRGMCKRGLVDRAFEFVSNLNTTPS 282

Query: 278 ---------------------RVMKG---ENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
                                R+M     + C P +  +S  +  L +   +  AV +  
Sbjct: 283 LNLYNLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLR 342

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
           +M    G  PD+  Y+ +     K  +V     F  +MI   W P  +N  T +  L   
Sbjct: 343 VMKE-KGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMISAGWLPDIVNYNTIMGSLCKK 401

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
              + A+ I+  + E G  P  +S N +   L + G
Sbjct: 402 GRADEALNIFKKLEEVGCPPNASSYNTMFGALWSSG 437


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 125/281 (44%), Gaps = 6/281 (2%)

Query: 127 GRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           GR  +     R M +D    + T+ ++  + C AGK+DEA      M   G   D V  +
Sbjct: 58  GRVVEALEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFS 117

Query: 187 SLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           +L+  +C+   E Q  R LE + + + + + D     I+     K  +VE A+K  G ++
Sbjct: 118 TLIDGLCKFGSEEQAFRVLEDVIQ-RGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVI 176

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
            +  + P  VL +   +    + K +D A K L VM  + C P +  F+  +  L K N 
Sbjct: 177 AK-GFTPT-VLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANR 234

Query: 305 STHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
              A QL +  MV  G  P+ +TY+ +   L K  +V +  + F  M +    P  +   
Sbjct: 235 VGEAQQLLE-KMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHN 293

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             I  L  A   E A ++++ + E G  P   + N L+ GL
Sbjct: 294 ILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGL 334



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 107/224 (47%), Gaps = 7/224 (3%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR- 208
           F  + + +C A   D A    +VM   G   +V     L++ +C+  N+   A + L + 
Sbjct: 187 FNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKA-NRVGEAQQLLEKM 245

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V     P+  +++ ++ G  K+G V++A + F +++ER    P +V+ +   +  L + K
Sbjct: 246 VTGGCSPNVVTYSTVINGLCKQGQVDDAYELF-QLMERRNC-PPNVVTHNILIDGLCKAK 303

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +++EA +    M+   C P +  +++ +D L K      A QL+  +     +  +++TY
Sbjct: 304 RIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTY 363

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
           + +F       R+ +  + F  ++   + P   + AT  +++L+
Sbjct: 364 STLFHGYAALGRMADACRIFSMLVDKGFSP---DLATYTSLILE 404



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/313 (19%), Positives = 111/313 (35%), Gaps = 44/313 (14%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  +   +  AG  D A+   + M  +G E + V   +L+  +C    +   ALE    
Sbjct: 11  TYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLC-DAGRVVEALEHFRA 69

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K   PD                                     V+ Y   +  L +  
Sbjct: 70  MAKDCAPD-------------------------------------VMTYTALVHALCKAG 92

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           + DEA   LR M    C P    FS  +D L K      A ++ + ++       D+   
Sbjct: 93  KFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFE 152

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
            +I     K   V    K    +I   + PT L     I     A + + A ++   ++E
Sbjct: 153 TIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIE 212

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKKAFYNES 444
            G +P   +   L+ GL    R+ + ++  E+M+       ++ Y   ++ L K    + 
Sbjct: 213 KGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCK--QGQV 270

Query: 445 RSMRDIFDSLERR 457
               ++F  +ERR
Sbjct: 271 DDAYELFQLMERR 283


>gi|255660912|gb|ACU25625.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 481

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  +   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-SAKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  FD M   GVE+ + + ++L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKLFDRMEELGVERTIKSYDALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +L+ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K++ EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMXEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARSILKEMMDKYLAPT 289



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K+G V+E+ K F  M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKLFDRMEELGVER------TIKSYDAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N L     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVLIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMXEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARSILKEMMDK 284


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 142/325 (43%), Gaps = 10/325 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEA 166
           G R +  A+  +VD+  +  + E+    +  M ++G++    T  ++ ++YC  G+   A
Sbjct: 260 GWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGA 319

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
           V  F+ M + G E +V   N+++   C    +  +A+  L+++++  V+PD  ++ +L+ 
Sbjct: 320 VRVFESMKLKGCEPNVWTYNAMVQGFC-NVGKVYKAMALLDQMRECGVEPDVVTYNLLIR 378

Query: 226 GWEKEGNVEEANKTFGEMVERFEWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           G   +G++E A +    ++   E N        Y   +  L +  +VDEA      ++  
Sbjct: 379 GQCIDGHIESAFR----LLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYR 434

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P    F+  ++ L K      A    +  MV  G  PD+ TY+   E L K K   E
Sbjct: 435 GIRPNSVTFNTVINGLCKGGKFDVACTFLE-KMVSAGCAPDTYTYSPFIENLCKTKGSRE 493

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
              F  EM++ + +P+ +N    I  L       +A  IW  ++  G  P   +    + 
Sbjct: 494 GLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVR 553

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILI 428
              N GRL +      EM    I++
Sbjct: 554 AYCNEGRLHEAENVVMEMKKGGIIV 578



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 115/288 (39%), Gaps = 7/288 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF S+   YC   + D A   FD M + G  QD V+  +L+   C    +T R  E L  
Sbjct: 166 TFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFC----ETGRVDEALEL 221

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            +++  PD  + A L++G       EE      +M E   W P    AY   +    R +
Sbjct: 222 FRELEQPDMYTHAALVKGLCDARRGEEGLYMLQKMKE-LGWRPA-TRAYAALVDLWCREQ 279

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           + +EA K L  M      P     +  ++   +    + AV++++ M +  G  P+  TY
Sbjct: 280 KAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKL-KGCEPNVWTY 338

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N + +      +V++      +M +   +P  +     I         E A  +   +  
Sbjct: 339 NAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEG 398

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           NG+   + + N L+  L   G++ +     + +  R I    VT + +
Sbjct: 399 NGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTV 446



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 99/225 (44%), Gaps = 6/225 (2%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G G     Y +N+++D L K G+ ++  +    ++  G+  +  TF ++ +  C  GK+D
Sbjct: 398 GNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFD 457

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAIL 223
            A    + M   G   D    +  +  +C+ +  +   L F++  ++K V P   ++ I+
Sbjct: 458 VACTFLEKMVSAGCAPDTYTYSPFIENLCKTKG-SREGLSFIDEMLQKDVKPSTVNYTIV 516

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++   KE N   A + +G+MV     +P+ V+ Y T +       ++ EA   +  MK  
Sbjct: 517 IDRLFKERNYGLATRIWGQMVS-LGCSPD-VVTYTTSVRAYCNEGRLHEAENVVMEMKKG 574

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
                   ++  +D    +  + HAV +   M     + P+  T+
Sbjct: 575 GIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGV-ASMPNHFTF 618



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/312 (19%), Positives = 123/312 (39%), Gaps = 11/312 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++  + C       A     +M   G   D    NSL+   CR + Q   A +  ++
Sbjct: 131 TYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQ-QLDVAQDLFDK 189

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +  +    D  S+A L+EG+ + G V+EA + F E+ +     P+ +  +   +  L   
Sbjct: 190 MPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQ-----PD-MYTHAALVKGLCDA 243

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           ++ +E L  L+ MK     P  + ++  +D+  +   +  A ++ + M   +G  P ++T
Sbjct: 244 RRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFD-NGLVPCAVT 302

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
              +     +  R+    + F  M     +P        +    +  +   A+ + + + 
Sbjct: 303 CTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMR 362

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR-- 445
           E G+ P   + N L+ G    G +    R    M    +   + T + L  A     +  
Sbjct: 363 ECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVD 422

Query: 446 SMRDIFDSLERR 457
               +FD LE R
Sbjct: 423 EACSLFDGLEYR 434


>gi|356531098|ref|XP_003534115.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Glycine max]
          Length = 466

 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 169/413 (40%), Gaps = 56/413 (13%)

Query: 63  ASSDDIESALACTGI-IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLM 119
           A  +++E+AL   GI + TP +   + +L YD    A+ FF WAG  +  S  P A+N M
Sbjct: 5   AGFNNMENALGQLGIPLSTPLVTGGLHRLRYDE-KIALRFFTWAGHQEDYSHEPCAYNDM 63

Query: 120 VDVLG----KNGRFEQMWNAVRVMKEDGVLSLP--TFASIFDSYCGAGKYDEAVMSFDVM 173
           +D+L     K  +F  + + +  MK +    +P      I   Y    KY   +  F   
Sbjct: 64  MDILSSTRYKVKQFRIVCDVLEYMKRNNRTMVPAEVLLVILRKY--TEKYLTHMQKFAKK 121

Query: 174 SMHGVEQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
               V+   ++ A N LL A+C+       A     +++K V P+ +++ IL+ GW +  
Sbjct: 122 KRIRVKTQLEINAFNLLLDALCKC-CLVEDAESLYKKMRKTVKPNAETYNILVFGWCRVR 180

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL---KFLRVMKGENCFPT 288
           N     K   EM+E     P++   Y T + T  +   + EA+   +F+R        PT
Sbjct: 181 NPTRGMKLLEEMIE-LGHRPDN-FTYNTAIDTYCKTGMITEAVDLFEFMRTKGSTISSPT 238

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
            K ++  +  L + +      +L    M+  G  PD  TY  I E +    ++ E  KF 
Sbjct: 239 AKTYAIIIVALAQHDRMEDCFKLIG-HMISSGCLPDVTTYKEIIEGMCMCGKIDEAYKFL 297

Query: 349 HEMIKNEWQP----------------------------TPLNCATA-------ITMLLDA 373
            EM    ++P                              LNC  +       I+M  + 
Sbjct: 298 EEMGNKSYRPDIVTYNCFLKVLCDNKKSEDALKLYGRMIELNCIPSVQTYNMLISMFFEM 357

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           D+P+ A E W  I   G  P   +   ++ GL N  ++ D     EE++N  +
Sbjct: 358 DDPDGAFETWQEIDNRGCRPDTDTYCVMIEGLFNCNKMEDACFLLEEVINEGV 410


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 143/345 (41%), Gaps = 7/345 (2%)

Query: 52  SARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL 111
           +A +   IL  ++   +   L    I  TP LV+ +L+  ++    A+ FF         
Sbjct: 38  AAALATLILTSSNPQALAQTLHSPTIQWTPQLVNTILKRLWNDGPKALQFFNLLSHHPSY 97

Query: 112 S--PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVM 168
           S  P +++  +D+  +      + + V  M+   +   P TFA I + Y  AGK   AV 
Sbjct: 98  SHHPSSYDHAIDISARLRDSPSLRSLVYRMRSARLGPTPKTFAIIAERYASAGKPHRAVK 157

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            F  M   G  QD+ + N++L  +C+ + +   A       K     D  S+ +++ GW 
Sbjct: 158 VFLSMHQFGCFQDLQSFNTILDVLCKSK-RVEMAYNLFKVFKGKFRADCVSYNVMVNGWC 216

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
                 +A +   EMV+R    P ++ +Y T L    R  Q++EA  F   MK  +C   
Sbjct: 217 LIKRTNKALEMLKEMVKR-GLTP-NLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEID 274

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  ++  +       +   A +++D  MV  G  P   TYN   + L K   V      F
Sbjct: 275 VITYTTVIHGFGVAGEIKRARKVFDT-MVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIF 333

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            EM+   + P  +     I  L    E E A+E    + ++G  P
Sbjct: 334 EEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEP 378



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 104/234 (44%), Gaps = 7/234 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDE 165
           RG   +  ++N M+    + G+  + W+    MK+ D  + + T+ ++   +  AG+   
Sbjct: 234 RGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKR 293

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   FD M   GV   V   N+ +  +C+++N  +  + F   V K   P+  ++ +++ 
Sbjct: 294 ARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIR 353

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G    G +E A +  G M +  +    +V  Y   +       ++D+AL   + M   +C
Sbjct: 354 GLCHRGEMERAMEFMGRMKD--DGCEPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSGDC 411

Query: 286 FPTLKFFS---NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
            P L  ++   +A+ +  K +D   A  L  I MV  G  P   T+N +   L+
Sbjct: 412 LPNLDTYNILISAMFVRKKSDDLLVAGNLL-IEMVDRGFVPRKFTFNRVLNGLL 464



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 99/211 (46%), Gaps = 11/211 (5%)

Query: 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
           +++ + R+L +  R  ++  P   +FAI+ E +   G    A K F  M +   +  + +
Sbjct: 115 RDSPSLRSLVYRMRSARL-GPTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCF--QDL 171

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGE---NCFPTLKFFSNALDILVKLNDSTHAVQL 311
            ++ T L  L + K+V+ A    +V KG+   +C  +     N   ++ + N +   ++ 
Sbjct: 172 QSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCV-SYNVMVNGWCLIKRTNKALEMLK- 229

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
               MV  G  P+  +YN + +   +  +++E   FF EM K + +   +   T I    
Sbjct: 230 ---EMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFG 286

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELL 402
            A E + A ++++ +++ G+LP  A+ N  +
Sbjct: 287 VAGEIKRARKVFDTMVKKGVLPSVATYNAFI 317


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 128/280 (45%), Gaps = 6/280 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ ++D   K G++E  +  +  M   GV++ + T++ +  +    G+++EAV     M 
Sbjct: 294 YSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQ 353

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
            +GV  DV+  +S +SA C ++ Q   A+  L  +  + V P+  S+ I++    K G  
Sbjct: 354 ENGVAPDVITYSSTISA-CAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRW 412

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA     EM  +    P  V+ Y   +    +  + ++AL  LR M      P +  ++
Sbjct: 413 REAIDLLQEM--QAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYN 470

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
           +A+D   K   S  AV+L    M  HG  PD +TY+ +       ++  E    F EM +
Sbjct: 471 SAIDACAKTGRSKIAVELLR-EMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQR 529

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
               P  ++C TAI         E A+++   +   G++P
Sbjct: 530 QGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVP 569



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 126/314 (40%), Gaps = 11/314 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++S   +     ++ EAV     M   GV+ +V+  ++ +SA CR+  Q   A++ L  
Sbjct: 223 TYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISA-CRKGGQWETAVDLLKE 281

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +  + + PD  +++ +++   K G  E A +   EM  +      +++ Y   +    + 
Sbjct: 282 MPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGV--VANIITYSIVIGACAKW 339

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            Q +EA+  LR M+     P +  +S+ +    K      AV L    M   G  P++++
Sbjct: 340 GQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLR-EMPMEGVTPNAIS 398

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y ++     K  R  E      EM  +   P  +N + AI     A   E A+ +   + 
Sbjct: 399 YGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMP 458

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNE 443
             G+ P   S N  +      GR         EM    L   ++ Y   +     A   +
Sbjct: 459 ATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASC--AMGRQ 516

Query: 444 SRSMRDIFDSLERR 457
                D+F  ++R+
Sbjct: 517 WEEALDLFREMQRQ 530



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 123/303 (40%), Gaps = 12/303 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++  +D   +  R+EQ    +R M   G+  ++ ++ S  D+    G+   AV     M 
Sbjct: 434 YSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMP 493

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
            HG+  DV+  ++++++ C    Q   AL+    +++  + PD  S    +    + G  
Sbjct: 494 AHGLAPDVITYSAVIAS-CAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWW 552

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP---TLK 290
           EEA    GEM       P+  ++Y T +    +G +  E +  LR M      P   + +
Sbjct: 553 EEALDVLGEM-PTMGLVPD-AISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYR 610

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
           F  +A  +     ++   V L D++ V  G  PD +TYN       K  R  E      +
Sbjct: 611 FAMSACSVDGLWKEAL--VLLRDMLAV--GLSPDVVTYNSAINACAKGGRWKEATVLLRQ 666

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M      P   +   AI    + D+   A+E+   +   G+ P EA+    +   +  G 
Sbjct: 667 MPTFGLAPDVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVSPNEATYLTAMYACKRCGE 726

Query: 411 LSD 413
             D
Sbjct: 727 KDD 729



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 84/211 (39%), Gaps = 7/211 (3%)

Query: 187 SLLSAICRQENQTS---RALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
           S L A  R+  Q     +AL+ L+R++ + V PD  +++  +         E A +    
Sbjct: 152 SHLKATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLAS 211

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M  R    P  VL Y + +    +  +  EA+  LR MKG+   P +  +S A+    K 
Sbjct: 212 MAARG--TPPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKG 269

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                AV L   M    G  PD +TY+ + +   K  +     +   EM         + 
Sbjct: 270 GQWETAVDLLKEMPAV-GLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIIT 328

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILP 393
            +  I       + E A+ +   + ENG+ P
Sbjct: 329 YSIVIGACAKWGQWEEAVALLREMQENGVAP 359


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 181/414 (43%), Gaps = 52/414 (12%)

Query: 54  RIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ---R 110
           R  CE+     + +    +   G+IP     +++L L   S  +   +  +A   +   +
Sbjct: 129 RACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIK 188

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
            S   +N+M++VL K G+ ++    + +M+  G+  ++ T+ +I   YC  G+ + A M 
Sbjct: 189 SSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMI 248

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWE 228
           FD+M   GV+ D     S +S +C+ E +   A   L ++K+I + P   ++  L++G+ 
Sbjct: 249 FDLMKCRGVKPDSYTYGSFISGMCK-EGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYC 307

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
            +GN+E A          F++                R K V E L            PT
Sbjct: 308 NKGNLEMA----------FDY----------------RDKMVREGL-----------MPT 330

Query: 289 LKFFS---NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
           +  ++   +AL +  K++++   ++     M   G  PDS+TYN++     +   V +  
Sbjct: 331 VSTYNMLIHALFLDCKMDEADGIIK----EMSEKGLVPDSVTYNILINGYCRCGNVKKAF 386

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
               EMI    QPT +   + I +L      + A +++  I+  GI P     N L+ G 
Sbjct: 387 TLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGH 446

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 457
              G +       +EM   +++  EVT + L +    E +  + R++ + ++ R
Sbjct: 447 CANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSR 500



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 134/324 (41%), Gaps = 10/324 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG +   Y +   +  + K G+ E+    +  MKE G+  +  T+ ++ D YC  G  + 
Sbjct: 255 RGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEM 314

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAI---CRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           A    D M   G+   V   N L+ A+   C+ +       E     +K + PD  ++ I
Sbjct: 315 AFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEM---SEKGLVPDSVTYNI 371

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+ + GNV++A     EM+ +    P  V  Y + +  L +  ++ +A      +  
Sbjct: 372 LINGYCRCGNVKKAFTLHDEMISK-GIQPTRV-TYTSLIYVLSKRGRMKQADDLFEKIVR 429

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +  FP L  F+  +D      +   A  +   M       PD +T+N + +   +  +V 
Sbjct: 430 KGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMK-VVPDEVTFNTLMQGRCREGKVE 488

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
              +   EM     +P  ++  T I+      + + A  + + +L  G  P   + N L+
Sbjct: 489 AARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALI 548

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRI 426
            GL          +  +EM+++ I
Sbjct: 549 QGLCKNEEGDHAEQLLKEMISKGI 572



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/337 (20%), Positives = 132/337 (39%), Gaps = 47/337 (13%)

Query: 131 QMWNAVRVMKEDGVLSLPTFASIFD----SYCGAGKYDEAVMSFDVMSMHGV-------- 178
           +++N + V +  GVL + T+  ++D    + C   + D+A   FD+M   GV        
Sbjct: 104 EVFNELGVAR--GVLGIKTYV-LYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACN 160

Query: 179 ---------------------------EQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
                                      +  VV  N +++ +C+ E +  +A EF+  ++ 
Sbjct: 161 DMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCK-EGKLKKAKEFIGLMEA 219

Query: 212 I-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
           + + P+  ++  ++ G+   G VE A   F  M  R    P+    Y +F+  + +  ++
Sbjct: 220 LGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCR-GVKPDS-YTYGSFISGMCKEGKL 277

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
           +EA   L  MK     PT   ++  +D      +   A    D  MV  G  P   TYNM
Sbjct: 278 EEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRD-KMVREGLMPTVSTYNM 336

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +   L  + ++ E +    EM +    P  +     I         + A  + + ++  G
Sbjct: 337 LIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKG 396

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           I P   +   L+  L   GR+       E+++ + I 
Sbjct: 397 IQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIF 433


>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 825

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 165/392 (42%), Gaps = 46/392 (11%)

Query: 57  CEILAHASSDDIESALACTGIIPTPDLVHEVL--QLSYDSPSSAVDFFRWA---GRGQRL 111
           C+     + D + + +A  G+     + + V+  +  Y   + A +  R     G G  +
Sbjct: 286 CKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEYKYGLVTEAAEMLRRMAEMGCGPDI 345

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY------- 163
           + Y  N+M++   K GR E+    +   KE G+L +  ++  +  +YC  G Y       
Sbjct: 346 TTY--NIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTPLMHAYCKKGDYVKASGML 403

Query: 164 ----------------------------DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
                                       D A+M  + M   GV  D    N L+S +C++
Sbjct: 404 FRIAEIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMMEKGVFPDAQIYNILMSGLCKK 463

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
               +  L     + + V PD   FA L++G+ + G ++EA K F +++ R   +P  ++
Sbjct: 464 GRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIKIF-KVIIRKGVDP-GIV 521

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y   +    +  ++ +AL  L  M   +  P    +S  +D  VK +D + A++++  M
Sbjct: 522 GYNAMIKGFCKFGKMTDALSCLNEMNSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQM 581

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           M  H   P+ +TY  +     K   +   EK F  M   +  P  +   T +     A +
Sbjct: 582 MK-HKFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLVPNVVTYTTLVGGFFKAGK 640

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRN 407
           PE A  I+  +L NG LP +A+ + L+ GL N
Sbjct: 641 PERATSIFELMLMNGCLPNDATFHYLINGLTN 672



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 148/330 (44%), Gaps = 25/330 (7%)

Query: 103 RWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           RW   G+   P+   +N+++D   K G  +    A+  +K  GVL ++ T+ ++ + +C 
Sbjct: 231 RW---GKCCVPHVVFYNMIIDGYCKKGDLQCATRALNELKMKGVLPTVETYGALINGFCK 287

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
           AG+++        M+  G+  +V   N+++ A  +     + A E L R+ ++   PD  
Sbjct: 288 AGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEYKY-GLVTEAAEMLRRMAEMGCGPDIT 346

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVER------FEWNPEHVLAYETFLITLIRGKQVDE 272
           ++ I++    K G +EEA++   +  ER      F + P  + AY        +G  V  
Sbjct: 347 TYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTP-LMHAYCK------KGDYVKA 399

Query: 273 ALKFLRVMK-GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           +    R+ + GE     L  +   +  +V   +   A+ + + MM   G FPD+  YN++
Sbjct: 400 SGMLFRIAEIGEK--SDLVSYGAFIHGVVVAGEIDVALMVREKMME-KGVFPDAQIYNIL 456

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
              L K  R+  ++    EM+    QP     AT I   +   E + AI+I+  I+  G+
Sbjct: 457 MSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIKIFKVIIRKGV 516

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            P     N ++ G    G+++D      EM
Sbjct: 517 DPGIVGYNAMIKGFCKFGKMTDALSCLNEM 546



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 12/179 (6%)

Query: 256 AYETFLITLIRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           A+   ++       +D AL+ F  V +  NCFPT    +  L+ LVK      A+QL+D 
Sbjct: 132 AFSALILAYAESGSLDRALQLFHTVREMHNCFPTFVASNLLLNGLVKSGKVDVALQLYDK 191

Query: 315 MMVFH---GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
           M+      GA  D+ T +++ + L    ++ E  +    +IK+ W    +       M++
Sbjct: 192 MLQTDDGTGAVVDNYTTSIMVKGLCNLGKIEEGRR----LIKHRWGKCCVPHVVFYNMII 247

Query: 372 DA----DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           D      + + A    N +   G+LP   +   L+ G    G    V +   EM  R +
Sbjct: 248 DGYCKKGDLQCATRALNELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGL 306


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 157/367 (42%), Gaps = 46/367 (12%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVR 137
           TP  +   L+   DS S+ +  F WA +     P +  +  ++  LGK G F+ M + ++
Sbjct: 55  TPTQLLHSLRREEDS-SAVIHLFYWASKQPNFKPSSSIFKEVLHKLGKAGEFDAMKDILK 113

Query: 138 VMKED-GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM--------------------- 175
            MK    V+   +     +SY   G Y+E +   D M +                     
Sbjct: 114 EMKISLSVIDNDSLLVFIESYASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDG 173

Query: 176 ---------------HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
                           G+  DV   N L+ A+CR  +Q   A+  +  ++   + PD  +
Sbjct: 174 NKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRA-HQIRPAILLMEEMEDFGLLPDEKT 232

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  +++G+ +EGN++ A +   +MVE         +     +    +  +++EAL+F+  
Sbjct: 233 FTTIMQGFIEEGNLDGAMRVKEQMVE--AGCVVTNVTVNVLVNGFCKEGRIEEALRFIEE 290

Query: 280 MK-GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
           M   E  FP    F+  ++ L K     HA+++ D MM+  G  PD  TYN +   L K 
Sbjct: 291 MSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMD-MMLREGFDPDIYTYNSLISGLCKL 349

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
             V E  K  ++MI+ +  P  +   T I+ L   ++ E A ++   +   GILP   + 
Sbjct: 350 GEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTY 409

Query: 399 NELLVGL 405
           N L+ GL
Sbjct: 410 NSLIQGL 416



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 147/335 (43%), Gaps = 6/335 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++V+ L K G  +     + +M  +G    + T+ S+    C  G+ DEAV   + 
Sbjct: 302 YTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQ 361

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKIVDPDGDSFAILLEGWEKEG 231
           M       + V  N+++S +C+ ENQ   A +  L    K + PD  ++  L++G     
Sbjct: 362 MIERDCSPNTVTYNTIISTLCK-ENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSR 420

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N   A + + EM  +   +P+    Y   + +L    ++ EAL  L+ M+   C   +  
Sbjct: 421 NHTVAMELYKEMKTK-GCHPDE-FTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVIT 478

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +D   K      A +++D  M   G   +S+TYN + + L K++RV E  +   +M
Sbjct: 479 YNTLIDGFCKNKRIAEAEEIFD-QMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQM 537

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           I    +P      + +T    A + + A +I   +  +G  P   +   L+ GL   GR+
Sbjct: 538 IMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRV 597

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446
               +    +  + I +     + + +A +   RS
Sbjct: 598 EAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRS 632



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 127/313 (40%), Gaps = 6/313 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N ++  L K G  ++    +  M E D   +  T+ +I  + C   + +EA     V
Sbjct: 337 YTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALV 396

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           ++  G+  DV   NSL+  +C   N T  A+E    +K K   PD  ++ +L++     G
Sbjct: 397 LTGKGILPDVCTYNSLIQGLCLSRNHTV-AMELYKEMKTKGCHPDEFTYNMLIDSLCFRG 455

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++EA     EM         +V+ Y T +    + K++ EA +    M+ +        
Sbjct: 456 KLQEALNLLKEM--EVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVT 513

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +D L K      A QL D  M+  G  PD  TYN +     K   + +       M
Sbjct: 514 YNTLIDGLCKSERVEEASQLMD-QMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTM 572

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
             +  +P  +   T I  L  A   E A ++   I   GI     + N ++  L    R 
Sbjct: 573 ASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRS 632

Query: 412 SDVRRFAEEMLNR 424
            +  R   EM+ +
Sbjct: 633 KEAVRLFREMIEK 645



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 168/394 (42%), Gaps = 53/394 (13%)

Query: 72  LACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGR 128
           L   GI+P     + ++Q   LS +   +   +     +G     + +N+++D L   G+
Sbjct: 397 LTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGK 456

Query: 129 FEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
            ++  N ++ M+  G   ++ T+ ++ D +C   +  EA   FD M + GV ++ V  N+
Sbjct: 457 LQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNT 516

Query: 188 LLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           L+  +C+ E +   A + +++ + + + PD  ++  LL  + K G++++A      M   
Sbjct: 517 LIDGLCKSE-RVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMAS- 574

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRV--MKGENCFPTLKFFSNALDILVKLND 304
            +     ++ Y T +  L +  +V+ A K LR   MKG N  P                 
Sbjct: 575 -DGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTP----------------- 616

Query: 305 STHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
             HA                   YN + + L + KR  E  + F EMI+    P  +   
Sbjct: 617 --HA-------------------YNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYK 655

Query: 365 TAITMLLDADEP-EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
                L     P   A++    +LE G +P  +S   L  GL +L  +  + +  + ++ 
Sbjct: 656 IVFRGLCQGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGLFSLAMVGTLIKLIDMVME 715

Query: 424 R-RILIYEVTMHK--LKKAFYNES-RSMRDIFDS 453
           + +    EVTM +  LK + Y ++  ++  I DS
Sbjct: 716 KAKFSDNEVTMIRGFLKISKYQDALATLGGILDS 749


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 172/383 (44%), Gaps = 21/383 (5%)

Query: 67  DIESALACTGIIPTP----DLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDV 122
           D  S +   GI P       +VH +  L   + ++ + F R    G +     +N+++D 
Sbjct: 254 DFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRL-FKRMEQNGCKPDVVTYNIIIDS 312

Query: 123 LGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           L K+       + +  M + G+   + T+ +I    C  G+ +EA+  F  M   G + D
Sbjct: 313 LYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPD 372

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           VVA N+++ ++C+ +   + A+EFL+  V + + P+  +++ +L G+   G ++EA + F
Sbjct: 373 VVAYNTIIDSLCK-DRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLF 431

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS---NALD 297
            EMV R      + L +   +  L +   V EA      M  +   P +  ++   N   
Sbjct: 432 KEMVGRNVM--PNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYC 489

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
           +  K+N++    ++    MV  G  PD  +YN++      ++R+ + +    +M   +  
Sbjct: 490 LRCKMNEARKVFEI----MVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLT 545

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
           P  +   T +  L        A E++  +  +G+LP   + + LL GL   G L +  + 
Sbjct: 546 PNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKL 605

Query: 418 AEEMLNRR----ILIYEVTMHKL 436
            + M  ++    I++Y + +  +
Sbjct: 606 FKSMKEKKLEPDIILYTILIEGM 628



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 151/344 (43%), Gaps = 6/344 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F+R A    R S   +   +  + K  ++  +      M   GV  ++ +   + +  C 
Sbjct: 81  FYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCR 140

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
               D AV  +  M   G++ DV+   +L++ +C  E +   A+E  N  V+   +PD  
Sbjct: 141 LNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVC-NEGKIKVAVELYNEMVRSGHEPDVI 199

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  L+ G    GN   A   F +M E+    P +V+ Y T + +L + + V++A+ FL 
Sbjct: 200 SYNTLINGLCNSGNTNMAVHVFKKM-EQNGCKP-NVVTYNTIIDSLCKDRLVNDAMDFLS 257

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M G    P    +++ +  L  L     A +L+   M  +G  PD +TYN+I + L K+
Sbjct: 258 EMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFK-RMEQNGCKPDVVTYNIIIDSLYKD 316

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
           + V++   F  EM+     P  +   T +  L    +   AI ++  + + G  P   + 
Sbjct: 317 RLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAY 376

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
           N ++  L     ++D   F  EM++R I    VT   +   F N
Sbjct: 377 NTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCN 420



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 153/321 (47%), Gaps = 13/321 (4%)

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           VR   E  V+S   + ++ +  C +G  + AV  F  M  +G + +VV  N+++ ++C+ 
Sbjct: 190 VRSGHEPDVIS---YNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCK- 245

Query: 196 ENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
           +   + A++FL+  V + + PD  ++  ++ G    G + EA + F  M E+    P+ V
Sbjct: 246 DRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRM-EQNGCKPD-V 303

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           + Y   + +L + + V++A  FL  M  +   P +  ++  L  L  L     A++L+  
Sbjct: 304 VTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKK 363

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
           M    G  PD + YN I + L K++ V++  +F  EM+     P  +  +T +    +  
Sbjct: 364 MEQ-KGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLG 422

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYE 430
           + + A +++  ++   ++P   + + L+ GL   G +S+ R   E M  +     I  Y 
Sbjct: 423 QLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYN 482

Query: 431 VTMHK-LKKAFYNESRSMRDI 450
             M+    +   NE+R + +I
Sbjct: 483 ALMNGYCLRCKMNEARKVFEI 503



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 139/314 (44%), Gaps = 11/314 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++ +  C  GK   AV  ++ M   G E DV++ N+L++ +C   N       F   
Sbjct: 165 TFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKM 224

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            +    P+  ++  +++   K+  V +A     EMV R    P   + Y + +  L    
Sbjct: 225 EQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGR--GIPPDAITYNSIVHGLCCLG 282

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVK---LNDSTHAVQLWDIMMVFHGAFPDS 325
           Q++EA +  + M+   C P +  ++  +D L K   +ND+   +      MV  G  PD 
Sbjct: 283 QLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLS----EMVDQGIPPDV 338

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TY  I   L    +++E  + F +M +   +P  +   T I  L        A+E  + 
Sbjct: 339 VTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSE 398

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES- 444
           +++ GI P   + + +L G  NLG+L +  +  +EM+ R ++   +T   L      E  
Sbjct: 399 MVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGM 458

Query: 445 -RSMRDIFDSLERR 457
               R +F+++  +
Sbjct: 459 VSEARWVFETMTEK 472



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 135/314 (42%), Gaps = 5/314 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +   +G +    A+N ++D L K+         +  M + G+  +  T+++I   +C 
Sbjct: 361 FKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCN 420

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G+ DEA   F  M    V  + +  + L+  +C++   +     F    +K V+P+  +
Sbjct: 421 LGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYT 480

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  L+ G+     + EA K F  MV +      H  +Y   +      +++D+A   L  
Sbjct: 481 YNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLH--SYNILINGYCNSRRMDKAKALLTQ 538

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M  +   P    ++  +  L  +     A +L+   M   G  P  +TY+++   L K+ 
Sbjct: 539 MSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFK-KMCSSGMLPTLMTYSILLNGLCKHG 597

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
            + E  K F  M + + +P  +     I  +    + E+A  +++ +  +GI P   + N
Sbjct: 598 HLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYN 657

Query: 400 ELLVGLRNLGRLSD 413
            ++ GL   G LSD
Sbjct: 658 VMIKGLLKEG-LSD 670



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 102/237 (43%), Gaps = 7/237 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFL 206
           TF+ + D  C  G   EA   F+ M+  GVE ++   N+L++  C   + N+  +  E +
Sbjct: 445 TFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIM 504

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
             V K   PD  S+ IL+ G+     +++A     +M  + +  P  V  Y T +  L  
Sbjct: 505 --VGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVK-KLTPNTV-TYNTIMKGLCY 560

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
             ++ +A +  + M      PTL  +S  L+ L K      A++L+  M       PD +
Sbjct: 561 VGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKE-KKLEPDII 619

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
            Y ++ E +    ++   +  F ++  +  QP        I  LL     + A E++
Sbjct: 620 LYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELF 676



 Score = 45.8 bits (107), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 1/140 (0%)

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           VD+AL     M   N  P++  F   L  + K+   +  V L + M +F G      + N
Sbjct: 74  VDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLF-GVTHTVYSLN 132

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
           ++  CL +   V      + +M K   QP  +   T I  + +  + ++A+E++N ++ +
Sbjct: 133 ILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRS 192

Query: 390 GILPLEASANELLVGLRNLG 409
           G  P   S N L+ GL N G
Sbjct: 193 GHEPDVISYNTLINGLCNSG 212


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 157/323 (48%), Gaps = 11/323 (3%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           R Q + P  + +N ++  L +  R +   +    M+  GV+ +  T+    D Y  +G+ 
Sbjct: 396 RKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRS 455

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           D+A+ +F+ M + G+  ++VA N+ L ++  +  +   A    NR+K   + PD  ++ +
Sbjct: 456 DKALETFEKMKIRGIAPNIVACNASLYSLA-EMGRLREAKVIFNRLKSNGLAPDSVTYNM 514

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +++ + K G V+EA +   +M E  +  P+ ++   + + TL +  +VDEA K    +K 
Sbjct: 515 MMKCYSKAGQVDEAIELLSDMSEN-QCEPD-IIVINSLINTLYKAGRVDEAWKMFCRLKD 572

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
               PT+  ++  +  L K      A++L+   M  +G  P+++T+N I +CL KN  V 
Sbjct: 573 MKLAPTVVTYNTLIAGLGKEGQVQRAMELF-ASMTGNGCPPNTITFNTILDCLCKNDEVD 631

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY-ILENGILPLEASANEL 401
              K  ++M      P  L   T I  L+   E  ++  IW +  ++  + P   +   L
Sbjct: 632 LALKMLYKMTTMNCMPDVLTFNTIIHGLV--IEKRVSDAIWLFHQMKKMLTPDCVTLCTL 689

Query: 402 LVGLRNLGRLSDVRRFAEEMLNR 424
           L G+   G + D  + AE+ ++R
Sbjct: 690 LPGVVKNGLMEDAFKIAEDFVHR 712



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 152/351 (43%), Gaps = 8/351 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + + Y + + + VLG+ GR ++    ++ M++DG    + T+  + D+ C AGK D+A
Sbjct: 259 GLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDA 318

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLE 225
           +  F  M     + D V   ++L           R  EF + ++     PD  +F IL+ 
Sbjct: 319 MELFVKMKASSHKPDRVTYITMLDKF-SDCGDLGRVKEFWSEMEADGYAPDVITFTILVN 377

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K GN++EA      M  R +    ++  Y T +  L+R  ++D+AL     M+    
Sbjct: 378 ALCKAGNIDEAFHLLDVM--RKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGV 435

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            PT   +   +D   K   S  A++ ++ M +  G  P+ +  N     L +  R+ E +
Sbjct: 436 VPTAYTYILFIDFYGKSGRSDKALETFEKMKI-RGIAPNIVACNASLYSLAEMGRLREAK 494

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             F+ +  N   P  +     +     A + + AIE+ + + EN   P     N L+  L
Sbjct: 495 VIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTL 554

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR--DIFDSL 454
              GR+ +  +    + + ++    VT + L      E +  R  ++F S+
Sbjct: 555 YKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASM 605



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 155/357 (43%), Gaps = 44/357 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +  +L+P    +N ++  LGK G+ ++       M  +G   +  TF +I D  C   + 
Sbjct: 571 KDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEV 630

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           D A+     M+      DV+  N+++  +   E + S A+   +++KK++ PD  +   L
Sbjct: 631 DLALKMLYKMTTMNCMPDVLTFNTIIHGLV-IEKRVSDAIWLFHQMKKMLTPDCVTLCTL 689

Query: 224 LEGWEKEGNVEEANKT-------FGEMVERFEW-----------NPEHVLAYETFLI--- 262
           L G  K G +E+A K         G  V+R  W             E  + +   L+   
Sbjct: 690 LPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFGDRLVCGR 749

Query: 263 -------------TLIRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
                         L + KQ   A   F+R  K     PTL+ ++  ++  + +++   A
Sbjct: 750 VCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMA 809

Query: 309 VQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
              W++   M   G  PD  TYN++ +   K+ +++E+ + + +MI +  +P  +     
Sbjct: 810 ---WNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNII 866

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
           I  L+ ++  + A++++  ++     P   +   LL GL   GRL + +   EEM++
Sbjct: 867 IANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVD 923



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 137/326 (42%), Gaps = 42/326 (12%)

Query: 124 GKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
           G  GR ++ W+    M+ DG    + TF  + ++ C AG  DEA    DVM   GV  ++
Sbjct: 348 GDLGRVKEFWSE---MEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNL 404

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFG 241
              N+L+S + R  N+   AL+  N ++ + V P   ++ + ++ + K G  ++A +TF 
Sbjct: 405 HTYNTLISGLLRV-NRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFE 463

Query: 242 EM-------------------------------VERFEWN---PEHVLAYETFLITLIRG 267
           +M                                 R + N   P+ V  Y   +    + 
Sbjct: 464 KMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSV-TYNMMMKCYSKA 522

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            QVDEA++ L  M    C P +   ++ ++ L K      A +++  +     A P  +T
Sbjct: 523 GQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLA-PTVVT 581

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +   L K  +V    + F  M  N   P  +   T +  L   DE ++A+++   + 
Sbjct: 582 YNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMT 641

Query: 388 ENGILPLEASANELLVGLRNLGRLSD 413
               +P   + N ++ GL    R+SD
Sbjct: 642 TMNCMPDVLTFNTIIHGLVIEKRVSD 667



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 123/291 (42%), Gaps = 21/291 (7%)

Query: 129 FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
           F  M N  +++K D    L T+  IF      G   +   +F  M   G   +  + N L
Sbjct: 147 FNLMQN--QIIKRD----LNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGL 200

Query: 189 L-----SAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
           +     S +CR+      ALE   R V + + P   +F+ L+    K  + E       E
Sbjct: 201 IHLLLQSGLCRE------ALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEE 254

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M E     P ++  Y   +  L R  ++DEA + ++ M+ + C P +  ++  +D L   
Sbjct: 255 M-ESLGLKP-NIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTA 312

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                A++L+ + M      PD +TY  + +       +  V++F+ EM  + + P  + 
Sbjct: 313 GKLDDAMELF-VKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVIT 371

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               +  L  A   + A  + + + + G+LP   + N L+ GL  + RL D
Sbjct: 372 FTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDD 422



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 123/277 (44%), Gaps = 6/277 (2%)

Query: 130  EQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
            E  WN    MK  G    + T+  + D++  +GK +E    ++ M     + + +  N +
Sbjct: 807  EMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNII 866

Query: 189  LSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
            ++ + +  N   +AL+ F + V     P   ++  LL+G  K G +EEA + F EMV+ +
Sbjct: 867  IANLVKS-NSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVD-Y 924

Query: 248  EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
               P + + Y   +    +   V+ A +  + M  E   P LK +++ +  L +      
Sbjct: 925  GCRPNNAI-YNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDD 983

Query: 308  AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
            A+  ++ +    G + DS+ YN++ + L ++ R+ E    + EM      P      + I
Sbjct: 984  ALHYFEKLKQ-TGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLI 1042

Query: 368  TMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
              L  A   E A +++  +   G+ P   + N L+ G
Sbjct: 1043 LNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRG 1079



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 141/336 (41%), Gaps = 8/336 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L+ Y++N ++ +L ++G   +     R M  +G+  SL TF+++  +  G  +  E 
Sbjct: 189 GFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVA-TGKRRDTET 247

Query: 167 VMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILL 224
           V S  + M   G++ ++      +  + R   +   A   + R++     PD  ++ +L+
Sbjct: 248 VKSLLEEMESLGLKPNIYTYTICIRVLGRA-GRIDEACRIMKRMEDDGCGPDVVTYTVLI 306

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +     G +++A + F +M +     P+ V  Y T L        +    +F   M+ + 
Sbjct: 307 DALCTAGKLDDAMELFVKM-KASSHKPDRV-TYITMLDKFSDCGDLGRVKEFWSEMEADG 364

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P +  F+  ++ L K  +   A  L D+M    G  P+  TYN +   L++  R+ + 
Sbjct: 365 YAPDVITFTILVNALCKAGNIDEAFHLLDVMRK-QGVLPNLHTYNTLISGLLRVNRLDDA 423

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
              F+ M      PT       I     +   + A+E +  +   GI P   + N  L  
Sbjct: 424 LDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYS 483

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           L  +GRL + +     + +  +    VT + + K +
Sbjct: 484 LAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCY 519



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 10/241 (4%)

Query: 188 LLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           L+  I  Q   T + + F +R V   V  DG     +++   K      A   F    + 
Sbjct: 725 LMGGILTQAG-TEKTILFGDRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKE 783

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDE-ALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
               P   L    FLI    G   DE A      MK   C P +  ++  LD   K    
Sbjct: 784 LGVKP--TLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKI 841

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
               +L++  M+     P+++T+N+I   L+K+  + +    F++++  ++ PTP     
Sbjct: 842 NELFELYE-QMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGP 900

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
            +  LL +   E A E++  +++ G  P  A  N L+ G    G+  DV   A E+  R 
Sbjct: 901 LLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILING---FGKTGDVNT-ACELFKRM 956

Query: 426 I 426
           +
Sbjct: 957 V 957



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 1/124 (0%)

Query: 101  FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
            F +    G  L   A+NLM+D LG++ R E+       M+  G+   L T+ S+  +   
Sbjct: 988  FEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGV 1047

Query: 160  AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            AG  ++A   ++ +   G+E +V   N+L+       N  S    +   +     P+  +
Sbjct: 1048 AGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGT 1107

Query: 220  FAIL 223
            FA L
Sbjct: 1108 FAQL 1111


>gi|242056423|ref|XP_002457357.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
 gi|241929332|gb|EES02477.1| hypothetical protein SORBIDRAFT_03g005950 [Sorghum bicolor]
          Length = 543

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 108/466 (23%), Positives = 198/466 (42%), Gaps = 59/466 (12%)

Query: 43  HLDAPYISSSARIICEILAHASSD--DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVD 100
           HL   Y S     + ++L   S+D  D+  AL    +    D++  VLQ    +   A+ 
Sbjct: 82  HLTDVYASE----VLKVLKSTSADNADLSDALRRFAVHMDEDIILTVLQKQRSNWQVALA 137

Query: 101 FFRWAGR--GQRLSPYAWNLMVDVLGKNGR---FEQMWNAVRVMKEDGVLSLPTFASIFD 155
           FF WA    G      A+  M+D+LG+  +     Q+++ +   +   V++   FA + +
Sbjct: 138 FFNWAATLPGYAHGSRAYTEMLDILGRMKKVRHMRQLFDEIPEERRVVVVTNKMFAVLLN 197

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
            Y GA K  EA+  F +   +G E D+V    LL ++CR ++      E L R KK   P
Sbjct: 198 RYAGAHKVQEAIEVFYLRKDYGFELDLVGFQILLMSLCRYKH--VEEAEALFREKKDEFP 255

Query: 216 D-GDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEA 273
               S+ I+L GW  +G++ +A + + +++  + E     +  Y TF+  L +  ++  A
Sbjct: 256 HVTKSWNIILNGWCVKGSLRDAQRIWNDIIASKVE---RDLFTYGTFINALAKNGRISAA 312

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
           +K  + M      P +   +  +D L   N    A++++   M       D  TYN + +
Sbjct: 313 VKLFKKMWETGINPDVAICNCIIDQLCFKNRIPEALEIFG-EMNDRLCQADVATYNTLIK 371

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPT-------------PLNCATAITML------LDAD 374
            L K KR+ +V +   +M      P              P +    +  +      LD+D
Sbjct: 372 YLCKKKRMEKVYELLDDMEAKGCSPNNRTYSYVLKTTEKPKDVIALMQRMEQTGCELDSD 431

Query: 375 EPEIAI-------------EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
              + +             ++W+ +  NG  P + S   ++ GL + G+L +  ++   M
Sbjct: 432 TYNLILNLYTNWKYEKGVQQVWDEMERNGSGPDQRSFTIMVHGLHSQGKLDEALQYYTTM 491

Query: 422 LNR--------RILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 459
            +R        +IL+  + M K   A  ++S SM      L+RR +
Sbjct: 492 KSRGMIPEPRTKILVKAMHMKKDGAATEDDSTSMAGKHLKLDRRSR 537


>gi|224111364|ref|XP_002315827.1| predicted protein [Populus trichocarpa]
 gi|222864867|gb|EEF01998.1| predicted protein [Populus trichocarpa]
          Length = 472

 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 151/356 (42%), Gaps = 19/356 (5%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLG 124
           ++E  L   G+  T DLV  VL   +    ++  FF WAG  +  S  P A+N M+D+L 
Sbjct: 15  NLEKTLDQLGLELTTDLVLNVLGRLHFEEKTSFRFFMWAGHQKNYSHEPCAYNEMIDILT 74

Query: 125 ----KNGRFEQMWNAVRVMKED--GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
               K  +F  + + +  MK +   V+ +    +I  +Y    KY   V  F       V
Sbjct: 75  STKYKARQFRIVCDMLDYMKRNNKNVVPVEVLLTILRNY--TEKYLTRVQKFAKKKRIRV 132

Query: 179 EQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           +   ++ A N LL A+C+       A     RVK  V PD +++ ++  GW +  N    
Sbjct: 133 KTQPEINAFNLLLDALCKC-CLAEDAEGLFKRVKNKVKPDANTYNVMFFGWCRVRNPTRG 191

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA---LKFLRVMKGENCFPTLKFFS 293
            K   EM++     P+    Y T +    R   V+EA    +F+R        PT K ++
Sbjct: 192 MKVLEEMIQ-LGHTPDS-FTYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYA 249

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +  LV+ N      +L +  M+  G  PD  T+  + E +    ++ E  +F  EM  
Sbjct: 250 IMIGALVRNNRMDECFKLLED-MINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMGN 308

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
             + P  +     + +L +    E A+ ++  ++E G  P   + N L+     +G
Sbjct: 309 KGYPPDIVTYNCFLKVLCENKNSEEALRLYERMIEAGCFPSVQTHNMLISMFFEMG 364



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 24/187 (12%)

Query: 83  LVHEVLQLSYDSPS----SAVDFFRWAG--------------RGQRLS-PYA--WNLMVD 121
           ++ E++QL +   S    +A+D F  AG              +G  +S P A  + +M+ 
Sbjct: 194 VLEEMIQLGHTPDSFTYITAIDAFCRAGMVNEAAELFEFMRTKGSTMSSPTAKTYAIMIG 253

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
            L +N R ++ +  +  M   G L  + TF  + +  C AGK DEA      M   G   
Sbjct: 254 ALVRNNRMDECFKLLEDMINSGCLPDVSTFKELIEGMCSAGKIDEAYRFLQEMGNKGYPP 313

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
           D+V  N  L  +C  +N +  AL    R ++    P   +  +L+  + + G+ + A +T
Sbjct: 314 DIVTYNCFLKVLCENKN-SEEALRLYERMIEAGCFPSVQTHNMLISMFFEMGDPDGAFET 372

Query: 240 FGEMVER 246
           + EM +R
Sbjct: 373 WYEMDKR 379


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 150/367 (40%), Gaps = 49/367 (13%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAV--- 167
            P  +  ++  LG  G  + M   V  M+ +G  + L    S  DSY G   +D+AV   
Sbjct: 73  GPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLI 132

Query: 168 ----------------------------------MSFDVMSMHGVEQDVVAVNSLLSAIC 193
                                               +  M   G++ DVV  N+L+ A+C
Sbjct: 133 LNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALC 192

Query: 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           R     +  L       + V PD  +F  L++G+ +EG++E A +    M+E        
Sbjct: 193 RAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEM------G 246

Query: 254 VLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
             A +  +  LI G     +V++AL +++    +   P    ++  ++ L + +   HA+
Sbjct: 247 CSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHAL 306

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           ++ D+M V  G  PD  TYN++  CL KN ++ E +   ++M+     P      T I  
Sbjct: 307 KVMDVM-VQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAA 365

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
           L   +  E A+++   +   G+ P   + N L+  L  +G      R  EEM N      
Sbjct: 366 LCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD 425

Query: 430 EVTMHKL 436
           EVT + L
Sbjct: 426 EVTYNTL 432



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 122/247 (49%), Gaps = 9/247 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D L   G+  +  + ++ M+  G   S  T+ +I D  C   + +EA   FD M 
Sbjct: 429 YNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMD 488

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
           + G+ ++ +  N+L+  +C+ + +   A E +N+ + + + P+  ++  +L  + K+G++
Sbjct: 489 LQGISRNAITFNTLIDGLCK-DKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDI 547

Query: 234 EEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++A      M    FE +   V+ Y T +  L +  +   ALK LR M+ +   PT K +
Sbjct: 548 KKAADILETMTANGFEVD---VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAY 604

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR-VHEVEKFFHEM 351
           +  L  L + N+   A+ L+  M    G  PD+LTY ++F  L +    + E   F  EM
Sbjct: 605 NPVLQSLFRRNNIRDALSLFREMAEV-GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEM 663

Query: 352 IKNEWQP 358
           +   + P
Sbjct: 664 VDKGFIP 670



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 134/297 (45%), Gaps = 6/297 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  V+ L +N         + VM ++G    + T+  + +  C  G+ +EA    + M 
Sbjct: 289 YNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMV 348

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D+   N+L++A+C   N+   AL+   +V  K V PD  +F IL+    K G+ 
Sbjct: 349 DRGCLPDITTFNTLIAALC-TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDP 407

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A + F EM +     P+ V  Y T +  L    ++ +AL  L+ M+   C  +   ++
Sbjct: 408 HLALRLFEEM-KNSGCTPDEV-TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYN 465

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D L K      A +++D  M   G   +++T+N + + L K+K++ +  +  ++MI 
Sbjct: 466 TIIDGLCKKMRIEEAEEVFD-QMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMIS 524

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
              QP  +   + +T      + + A +I   +  NG      +   L+ GL   GR
Sbjct: 525 EGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGR 581



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 139/309 (44%), Gaps = 7/309 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           T   + + YC  G+ ++A+         G E D +  N+ ++ +C Q +    AL+ ++ 
Sbjct: 253 TVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLC-QNDHVGHALKVMDV 311

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V++  DPD  ++ I++    K G +EEA     +MV+R    P+ +  + T +  L  G
Sbjct: 312 MVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDR-GCLPD-ITTFNTLIAALCTG 369

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +++EAL   R +  +   P +  F+  ++ L K+ D   A++L++  M   G  PD +T
Sbjct: 370 NRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE-EMKNSGCTPDEVT 428

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN + + L    ++ +      +M       + +   T I  L      E A E+++ + 
Sbjct: 429 YNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMD 488

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES--R 445
             GI     + N L+ GL    ++ D      +M++  +    +T + +   +  +   +
Sbjct: 489 LQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIK 548

Query: 446 SMRDIFDSL 454
              DI +++
Sbjct: 549 KAADILETM 557



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 144/348 (41%), Gaps = 40/348 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N++V+ L KNG+ E+    +  M + G L  + TF ++  + C   + +EA+     
Sbjct: 322 FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQ 381

Query: 173 MSMHGVEQDVVAVNSLLSAICR-----------QENQTS--------------------- 200
           +++ GV  DV   N L++A+C+           +E + S                     
Sbjct: 382 VTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK 441

Query: 201 --RALEFLNRVKKIVDPDGD-SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             +AL+ L  ++    P    ++  +++G  K+  +EEA + F +M    +    + + +
Sbjct: 442 LGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM--DLQGISRNAITF 499

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
            T +  L + K++D+A + +  M  E   P    +++ L    K  D   A  + + M  
Sbjct: 500 NTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTA 559

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
            +G   D +TY  +   L K  R     K    M     +PTP      +  L   +   
Sbjct: 560 -NGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIR 618

Query: 378 IAIEIWNYILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNR 424
            A+ ++  + E G  P   +   +  GL R  G + +   F  EM+++
Sbjct: 619 DALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDK 666


>gi|255660904|gb|ACU25621.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 484

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  +   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-SAKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L  A
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKA 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPARHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L    ++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAGKMIEARSILKEMMDKYLAPT 289



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   P    F N +     L+        +   M    
Sbjct: 122 FKAILRRGRYMMAKRYFNKMLSEGIEPARHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N G++ + R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAGKMIEARSILKEMMDK 284


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 150/367 (40%), Gaps = 49/367 (13%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAV--- 167
            P  +  ++  LG  G  + M   V  M+ +G  + L    S  DSY G   +D+AV   
Sbjct: 73  GPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLI 132

Query: 168 ----------------------------------MSFDVMSMHGVEQDVVAVNSLLSAIC 193
                                               +  M   G++ DVV  N+L+ A+C
Sbjct: 133 LNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALC 192

Query: 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           R     +  L       + V PD  +F  L++G+ +EG++E A +    M+E        
Sbjct: 193 RAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEM------G 246

Query: 254 VLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
             A +  +  LI G     +V++AL +++    +   P    ++  ++ L + +   HA+
Sbjct: 247 CSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHAL 306

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           ++ D+M V  G  PD  TYN++  CL KN ++ E +   ++M+     P      T I  
Sbjct: 307 KVMDVM-VQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAA 365

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
           L   +  E A+++   +   G+ P   + N L+  L  +G      R  EEM N      
Sbjct: 366 LCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD 425

Query: 430 EVTMHKL 436
           EVT + L
Sbjct: 426 EVTYNTL 432



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 121/247 (48%), Gaps = 9/247 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D L   G+  +  + ++ M+  G   S  T+ +I D  C   + +EA   FD M 
Sbjct: 429 YNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMD 488

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
           + G+ ++ +  N+L+  +C+ + +   A   +N+ + + + P+  ++  +L  + K+G++
Sbjct: 489 LQGISRNAITFNTLIDGLCK-DKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDI 547

Query: 234 EEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++A      M    FE +   V+ Y T +  L +  +   ALK LR M+ +   PT K +
Sbjct: 548 KKAADILETMTANGFEVD---VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAY 604

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR-VHEVEKFFHEM 351
           +  L  L + N+   A+ L+  M    G  PD+LTY ++F  L +    + E   F  EM
Sbjct: 605 NPVLQSLFRRNNIRDALSLFREMAEV-GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEM 663

Query: 352 IKNEWQP 358
           +   + P
Sbjct: 664 VDKGFIP 670



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 133/297 (44%), Gaps = 6/297 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  V+ L +N         + VM ++G    + T+  + +  C  G+ +EA    + M 
Sbjct: 289 YNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMV 348

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D+   N+L++A+C   N+   AL+   +V  K V PD  +F IL+    K G+ 
Sbjct: 349 DRGCLPDITTFNTLIAALC-TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDP 407

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A + F EM +     P+ V  Y T +  L    ++ +AL  L+ M+   C  +   ++
Sbjct: 408 HLALRLFEEM-KNSGCTPDEV-TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYN 465

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D L K      A +++D  M   G   +++T+N + + L K+K++ +     ++MI 
Sbjct: 466 TIIDGLCKKMRIEEAEEVFD-QMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMIS 524

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
              QP  +   + +T      + + A +I   +  NG      +   L+ GL   GR
Sbjct: 525 EGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGR 581



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 139/309 (44%), Gaps = 7/309 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           T   + + YC  G+ ++A+         G E D +  N+ ++ +C Q +    AL+ ++ 
Sbjct: 253 TVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLC-QNDHVGHALKVMDV 311

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V++  DPD  ++ I++    K G +EEA     +MV+R    P+ +  + T +  L  G
Sbjct: 312 MVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDR-GCLPD-ITTFNTLIAALCTG 369

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +++EAL   R +  +   P +  F+  ++ L K+ D   A++L++  M   G  PD +T
Sbjct: 370 NRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE-EMKNSGCTPDEVT 428

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN + + L    ++ +      +M       + +   T I  L      E A E+++ + 
Sbjct: 429 YNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMD 488

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES--R 445
             GI     + N L+ GL    ++ D      +M++  +    +T + +   +  +   +
Sbjct: 489 LQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIK 548

Query: 446 SMRDIFDSL 454
              DI +++
Sbjct: 549 KAADILETM 557



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 143/348 (41%), Gaps = 40/348 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N++V+ L KNG+ E+    +  M + G L  + TF ++  + C   + +EA+     
Sbjct: 322 FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQ 381

Query: 173 MSMHGVEQDVVAVNSLLSAICR-----------QENQTS--------------------- 200
           +++ GV  DV   N L++A+C+           +E + S                     
Sbjct: 382 VTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK 441

Query: 201 --RALEFLNRVKKIVDPDGD-SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             +AL+ L  ++    P    ++  +++G  K+  +EEA + F +M    +    + + +
Sbjct: 442 LGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM--DLQGISRNAITF 499

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
            T +  L + K++D+A   +  M  E   P    +++ L    K  D   A  + + M  
Sbjct: 500 NTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTA 559

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
            +G   D +TY  +   L K  R     K    M     +PTP      +  L   +   
Sbjct: 560 -NGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIR 618

Query: 378 IAIEIWNYILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNR 424
            A+ ++  + E G  P   +   +  GL R  G + +   F  EM+++
Sbjct: 619 DALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDK 666


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 131/308 (42%), Gaps = 7/308 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ ++D L K GR   + +AV + +E     +  T+ S+   YC AG  DEA+     M 
Sbjct: 217 YSTVIDGLCKAGR---LRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMV 273

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
                 DVV   +L+SA C+          F   V   + PD  +F  L++G   EG +E
Sbjct: 274 DDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRME 333

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A +   E+  R    P  +  Y   +    +  QV +A + +   +     P    ++ 
Sbjct: 334 DALELLEEITRR--GCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNI 391

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT-YNMIFECLIKNKRVHEVEKFFHEMIK 353
            +    +   +  A+Q  D +    G  P S+  Y +I + L ++ R  +  +F+ EMI+
Sbjct: 392 LVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQ 451

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
             + P     AT +  L  A +P+ A E+   +++ G  P   + + ++      G +  
Sbjct: 452 RGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQK 511

Query: 414 VRRFAEEM 421
               A E+
Sbjct: 512 ADELASEL 519



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 127/299 (42%), Gaps = 8/299 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++++ D  C   + DEAV   + M+  G    VV  NS+++  CR   +   A  F+ +
Sbjct: 111 TYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRA-RRVDEAHGFMEQ 169

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V +   PD  ++  L+ G+ K  +V    +  GE V R  + P+ ++ Y T +  L + 
Sbjct: 170 MVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGE-VTRRGFTPD-IVTYSTVIDGLCKA 227

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            ++ +A+     M   +C PT   +++ +    +  D   A++L    MV     PD +T
Sbjct: 228 GRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLG-KMVDDKCAPDVVT 283

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y  +     K  R+ +  + F +M+ N+  P  +   + +  L      E A+E+   I 
Sbjct: 284 YTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEIT 343

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446
             G  P   + N ++ G     ++        +  +R  +   VT + L        R+
Sbjct: 344 RRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRT 402



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 126/332 (37%), Gaps = 46/332 (13%)

Query: 128 RFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           +  ++ +AV+V++E      V    T   +  S C   + D+A    + M   G+  + +
Sbjct: 51  KARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAI 110

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
             ++L+  +C+ E                                    ++EA      M
Sbjct: 111 TYSALVDGLCKCE-----------------------------------RLDEAVALVETM 135

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
            ER       V+ Y + +    R ++VDEA  F+  M  E C P +  ++  +    K  
Sbjct: 136 AER--GCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSR 193

Query: 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
           D    ++L    +   G  PD +TY+ + + L K  R+ +    F EM      PT +  
Sbjct: 194 DVGRGLELLG-EVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITY 249

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
            + I     A + + AI +   ++++   P   +   L+     +GRL D     ++M+ 
Sbjct: 250 NSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVA 309

Query: 424 RRILIYEVTMHKLKKAFYNESRSMRDIFDSLE 455
            ++    VT   L      E R M D  + LE
Sbjct: 310 NKLSPDVVTFTSLVDGLCGEGR-MEDALELLE 340



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 93/239 (38%), Gaps = 10/239 (4%)

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           N ++  +CR   +   AL    ++     PD  ++  L+ G  K   + +A +   EMV 
Sbjct: 9   NVVIGGLCRA-GRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMV- 66

Query: 246 RFEWNPEHVLAYETFLI---TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
               +  HV    T  +   +L  G +VD+A + +  M           +S  +D L K 
Sbjct: 67  ----SARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKC 122

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                AV L + M    G  P  +TYN I     + +RV E   F  +M+     P  + 
Sbjct: 123 ERLDEAVALVETM-AERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIIT 181

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
               I     + +    +E+   +   G  P   + + ++ GL   GRL D     EEM
Sbjct: 182 YTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM 240


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 101/451 (22%), Positives = 192/451 (42%), Gaps = 47/451 (10%)

Query: 32  PHRPTRPRFPTHLDAPY---ISSSARIICEILAHASSDDIESAL---------ACTGIIP 79
           PH    P FP HL   Y     S+      + AHA +  + SAL          C   + 
Sbjct: 128 PH--AEPLFP-HLAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLR 184

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           + + +   L  S D   +A+ + +    G     +   +M     ++GR  Q    V  M
Sbjct: 185 SCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEM 244

Query: 140 KEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           +  G+ ++L  + ++ D YCG G  ++A    + +   G+  +VV    L+   C+    
Sbjct: 245 EGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGR- 303

Query: 199 TSRALEFLNRVKKIVDPDGD------SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
               +E   RV K +   GD      ++ +++ G+ + G +++A +   EM  R      
Sbjct: 304 ----MEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEM--RDAGIHV 357

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           ++  Y T +  L +  +++E  K L+ M+     P    ++  +D   +      A ++ 
Sbjct: 358 NLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMC 417

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
             MMV +G    +LTYN + +       + +  + +  M+K    P  ++C+T +  L  
Sbjct: 418 R-MMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFK 476

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
           A + E A+ +W   L  G+     + N ++ GL  +GR+++    AEE+L+R        
Sbjct: 477 AGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAE----AEELLDR-------- 524

Query: 433 MHKLKKAFYNESRSMRDIFDSLERRCKTSQM 463
           M +L+     +S + R +FD     CK  Q+
Sbjct: 525 MKELRCP--PDSLTYRTLFDGY---CKLGQL 550



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 10/212 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDV 172
           WN+++  L K+GR     +    ++    L  P   T++S+      +G  DEA    DV
Sbjct: 703 WNVIIFGLCKSGRIADAKSLFESLRNKRFL--PDNFTYSSLIHGCAASGSIDEAFSLRDV 760

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M   G+  +++  NSL+  +C+   + SRA+   N+++ K + P+G ++  L++ + KEG
Sbjct: 761 MLSAGLTPNIITYNSLIYGLCKS-GKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEG 819

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
              EA K   +MVE  E     V+ Y   +  L     ++EA+K L  M   N  P    
Sbjct: 820 KTTEAFKLKQKMVE--EGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYIT 877

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           +   +   +K  +     +L+D M +  G  P
Sbjct: 878 YCTLIHGYIKSGNMEEISKLYDEMHI-RGLLP 908



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 144/346 (41%), Gaps = 23/346 (6%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGK 162
           RG   +   +N +++ L K GR  +    +  MKE   L  P    T+ ++FD YC  G+
Sbjct: 493 RGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKE---LRCPPDSLTYRTLFDGYCKLGQ 549

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSA--ICRQENQTSRALEFLNRVKKIVDPDGDSF 220
              A    + M   G    V   NS ++   I +Q ++ +     ++   + + P+  ++
Sbjct: 550 LGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMS--ARGLSPNLVTY 607

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ GW KEGN+ EA   + EMV     NP +V      +    +  +VDEA   L+ +
Sbjct: 608 GALIAGWCKEGNLHEACNLYFEMVNN-GMNP-NVFICSALMSCFYKEGKVDEANLVLQKL 665

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
              +  P     +  +D +  + D+          +        ++ +N+I   L K+ R
Sbjct: 666 VNIDMIPGCSISTIEIDKISHVVDT----------IADGNPHSANVMWNVIIFGLCKSGR 715

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           + + +  F  +    + P     ++ I     +   + A  + + +L  G+ P   + N 
Sbjct: 716 IADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNS 775

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446
           L+ GL   G+LS       ++ ++ I    +T + L   +  E ++
Sbjct: 776 LIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKT 821



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/308 (20%), Positives = 130/308 (42%), Gaps = 29/308 (9%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRAL 203
           +L T+ ++   +C  G   EA   +  M  +G+  +V   ++L+S   ++   ++ +  L
Sbjct: 603 NLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVL 662

Query: 204 EFL----------------NRVKKIVDPDGDS--------FAILLEGWEKEGNVEEANKT 239
           + L                +++  +VD   D         + +++ G  K G + +A   
Sbjct: 663 QKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSL 722

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           F E +    + P++   Y + +        +DEA     VM      P +  +++ +  L
Sbjct: 723 F-ESLRNKRFLPDN-FTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGL 780

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            K    + AV L++ +    G  P+ +TYN + +   K  +  E  K   +M++   QPT
Sbjct: 781 CKSGKLSRAVNLFNKLQS-KGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPT 839

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
            +  +  I  L      E AI++ + ++EN + P   +   L+ G    G + ++ +  +
Sbjct: 840 VITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYD 899

Query: 420 EMLNRRIL 427
           EM  R +L
Sbjct: 900 EMHIRGLL 907



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 89/208 (42%), Gaps = 3/208 (1%)

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           N ++  +C+          F +   K   PD  +++ L+ G    G+++EA  +  +++ 
Sbjct: 704 NVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEA-FSLRDVML 762

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
                P +++ Y + +  L +  ++  A+     ++ +   P    ++  +D   K   +
Sbjct: 763 SAGLTP-NIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKT 821

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
           T A +L    MV  G  P  +TY+++   L     + E  K   +MI+N   P  +   T
Sbjct: 822 TEAFKLKQ-KMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCT 880

Query: 366 AITMLLDADEPEIAIEIWNYILENGILP 393
            I   + +   E   ++++ +   G+LP
Sbjct: 881 LIHGYIKSGNMEEISKLYDEMHIRGLLP 908


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           T++ +    C  G++ EA    + M+ HG+  DVV    L+  +C+ + + + A++ LN 
Sbjct: 140 TYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCK-DGRATHAMDLLNL 198

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V+K  +P   ++ +LL G  KEG V +A K    M+E+       V+ Y T +  L   
Sbjct: 199 MVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEK--GKKADVVTYNTLMKGLCDK 256

Query: 268 KQVDEALKFLRVM-KGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
            +VDEALK    M   ENC  P +  F+  +  L K    T AV++    MV  G+  + 
Sbjct: 257 GKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHR-KMVKKGSCGNL 315

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TYNM+    +K  ++ E  + + +++   + P     +  I          IA  ++  
Sbjct: 316 VTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCE 375

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
           +  +G+ P     N L+  L   G L   +   +EM N
Sbjct: 376 MRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGN 413



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 139/332 (41%), Gaps = 44/332 (13%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A+   R  GR + +SP   ++N +++ L K  + ++    +  M+  G   +  T  ++ 
Sbjct: 17  AMGLIREMGR-KSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLM 75

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           D  C  G+ DEA+   + M   G + DVV   +L+S  C                     
Sbjct: 76  DGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNN------------------- 116

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
                           GN++   + F EM+ +      +V+ Y   +  L R  Q  EA 
Sbjct: 117 ----------------GNLDRGKELFDEMLGK--GISANVVTYSCLVHGLCRLGQWKEAN 158

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
             L  M      P +  ++  +D L K   +THA+ L ++ MV  G  P ++TYN++   
Sbjct: 159 TVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNL-MVEKGEEPSNVTYNVLLSG 217

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL--ENGIL 392
           L K   V +  K    MI+   +   +   T +  L D  + + A++++N +   EN + 
Sbjct: 218 LCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLE 277

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           P   + N L+ GL   GRL+   +   +M+ +
Sbjct: 278 PNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKK 309



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 150/350 (42%), Gaps = 9/350 (2%)

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV 136
           ++    LVH + +L     ++ V     A  G       +  ++D L K+GR     + +
Sbjct: 138 VVTYSCLVHGLCRLGQWKEANTV-LNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLL 196

Query: 137 RVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
            +M E G   S  T+  +    C  G   +A     +M   G + DVV  N+L+  +C  
Sbjct: 197 NLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLC-D 255

Query: 196 ENQTSRALEFLNRV---KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           + +   AL+  N +   +  ++P+  +F +L+ G  KEG + +A K   +MV++      
Sbjct: 256 KGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCG-- 313

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +++ Y   L   ++  ++ EA++  + +      P    +S  +D   K+     A  L+
Sbjct: 314 NLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLF 373

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
              M  HG  P    YN +   L K   + + +  F EM     +P  ++  T I   L 
Sbjct: 374 -CEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLK 432

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
           A + +   E+   ++E G+ P   + + L+  L  LG L + +   E M+
Sbjct: 433 AGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMV 482



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 129/294 (43%), Gaps = 43/294 (14%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDE 165
           +G+  S   +N+++  L K G     +  +R+M E G  + + T+ ++    C  GK DE
Sbjct: 202 KGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDE 261

Query: 166 AVMSFDVM--SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-------------- 209
           A+  F+ M  + + +E +V   N L+  +C+ E + ++A++   ++              
Sbjct: 262 ALKLFNSMFDNENCLEPNVFTFNMLIGGLCK-EGRLTKAVKIHRKMVKKGSCGNLVTYNM 320

Query: 210 ------------------KKIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
                             K+++D    P+  +++IL++G+ K   +  A   F EM    
Sbjct: 321 LLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEM-RTH 379

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
             NP  +  Y T + +L +   +++A    + M   NC P +  F+  +D  +K  D   
Sbjct: 380 GLNPA-LFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQF 438

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
             +L  + MV  G  PD+LT++ +   L K   + E +     M+ + + P  L
Sbjct: 439 VKEL-QMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDAL 491



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 1/150 (0%)

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           L  L R   V EA+  +R M  ++  P +  ++  ++ L K      AV L  + M   G
Sbjct: 5   LKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLL-LEMEAAG 63

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
            FP+S+T   + + L K+ R+ E  +    M K  +    +   T I+   +    +   
Sbjct: 64  CFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGK 123

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGR 410
           E+++ +L  GI     + + L+ GL  LG+
Sbjct: 124 ELFDEMLGKGISANVVTYSCLVHGLCRLGQ 153


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 101/451 (22%), Positives = 192/451 (42%), Gaps = 47/451 (10%)

Query: 32  PHRPTRPRFPTHLDAPY---ISSSARIICEILAHASSDDIESAL---------ACTGIIP 79
           PH    P FP HL   Y     S+      + AHA +  + SAL          C   + 
Sbjct: 128 PH--AEPLFP-HLAEVYRDFTFSAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLR 184

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           + + +   L  S D   +A+ + +    G     +   +M     ++GR  Q    V  M
Sbjct: 185 SCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEM 244

Query: 140 KEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           +  G+ ++L  + ++ D YCG G  ++A    + +   G+  +VV    L+   C+    
Sbjct: 245 EGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGR- 303

Query: 199 TSRALEFLNRVKKIVDPDGD------SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
               +E   RV K +   GD      ++ +++ G+ + G +++A +   EM  R      
Sbjct: 304 ----MEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEM--RDAGIHV 357

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           ++  Y T +  L +  +++E  K L+ M+     P    ++  +D   +      A ++ 
Sbjct: 358 NLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMC 417

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
             MMV +G    +LTYN + +       + +  + +  M+K    P  ++C+T +  L  
Sbjct: 418 R-MMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFK 476

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
           A + E A+ +W   L  G+     + N ++ GL  +GR+++    AEE+L+R        
Sbjct: 477 AGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAE----AEELLDR-------- 524

Query: 433 MHKLKKAFYNESRSMRDIFDSLERRCKTSQM 463
           M +L+     +S + R +FD     CK  Q+
Sbjct: 525 MKELRCP--PDSLTYRTLFDGY---CKLGQL 550



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 144/346 (41%), Gaps = 23/346 (6%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGK 162
           RG   +   +N +++ L K GR  +    +  MKE   L  P    T+ ++FD YC  G+
Sbjct: 493 RGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKE---LRCPPDSLTYRTLFDGYCKLGQ 549

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSA--ICRQENQTSRALEFLNRVKKIVDPDGDSF 220
              A    + M   G    V   NS ++   I +Q ++ +     ++   + + P+  ++
Sbjct: 550 LGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMS--ARGLSPNLVTY 607

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ GW KEGN+ EA   + EMV     NP +V      +    +  +VDEA   L+ +
Sbjct: 608 GALIAGWCKEGNLHEACNLYFEMVNN-GMNP-NVFICSALMSCFYKEGKVDEANLVLQKL 665

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
              +  P     +  +D +  + D+          +        ++ +N+I   L K+ R
Sbjct: 666 VNIDMIPGCSISTIEIDKISHVVDT----------IADGNPHSANVMWNVIIFGLCKSGR 715

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           + + +  F  +    + P     ++ I     +   + A  + + +L  G+ P   + N 
Sbjct: 716 IADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNS 775

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446
           L+ GL   G+LS       ++ ++ I    +T + L   +  E ++
Sbjct: 776 LIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKT 821



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 29/212 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDV 172
           WN+++  L K+GR     +    ++    L  P   T++S+      +G  DEA    DV
Sbjct: 703 WNVIIFGLCKSGRIADAKSLFESLRNKRFL--PDNFTYSSLIHGCAASGSIDEAFSLRDV 760

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M   G+  +++  NSL+  +C+   + SRA+   N+++ K + P+G ++  L++ + KEG
Sbjct: 761 MLSAGLTPNIITYNSLIYGLCKS-GKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEG 819

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
              EA K   +MVE            E ++         +EA+K L  M   N  P    
Sbjct: 820 KTTEAFKLKQKMVE------------EGYM---------EEAIKLLDQMIENNVDPNYIT 858

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           +   +   +K  +     +L+D M +  G  P
Sbjct: 859 YCTLIHGYIKSGNMEEISKLYDEMHI-RGLLP 889


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 121/255 (47%), Gaps = 6/255 (2%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYD 164
           G+G  L    +N +++   K G  +   + +++MK + V   + TF  +   +C  GK  
Sbjct: 294 GKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVH 353

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAIL 223
           +A+     M+  G+  + V  NSL+S  C    +   AL  L+ +++  V PD  ++AI 
Sbjct: 354 KAMAFLTQMAGAGLSPNTVTFNSLISGQC-SVGERKIALRLLDLMEEYGVLPDRQTYAIF 412

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++    EG +EEA+  F  +    +    H + Y + +    +   +D A   +  M  E
Sbjct: 413 IDALCDEGQLEEAHSLFSCL--PMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASE 470

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
           NC P +  ++  +D L K+     A+ L D M    G  P + T+N++ + ++ +K+  +
Sbjct: 471 NCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKK-QGIEPTTCTFNILIKQMLWDKKHAD 529

Query: 344 VEKFFHEMIKNEWQP 358
             K + +MI +  +P
Sbjct: 530 AAKMYEQMISSGCKP 544



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/361 (19%), Positives = 136/361 (37%), Gaps = 15/361 (4%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           RW     R   Y++ +++  L   GR +        M        + T+  + D  C   
Sbjct: 154 RWGACYDR---YSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVR 210

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSF 220
           +  EA      M   GV  +VV  N+L+  +C QE +     + L +++ +   PD  ++
Sbjct: 211 RVGEAEALLGEMVNKGVVPNVVTYNALIGGLC-QEGRFDDVTKLLEKMEIQRHSPDCWTY 269

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             ++ G  K G V    K   E + +       VL Y   +    +G  +  AL  L++M
Sbjct: 270 TQVVHGLCKHGKVGHGAKVLHEAIGK--GVALEVLTYNALINGYCKGGDMKAALDVLQLM 327

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF--ECLIKN 338
           K     P ++ F+  +          H    +   M   G  P+++T+N +   +C +  
Sbjct: 328 KRNRVNPGVQTFNEVIHGFC-CGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGE 386

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
           +++    +    M +    P     A  I  L D  + E A  +++ +   GI       
Sbjct: 387 RKI--ALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIY 444

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR--DIFDSLER 456
             L+ G   +G +       E+M +   +    T + L        R  R  D+ D +++
Sbjct: 445 TSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKK 504

Query: 457 R 457
           +
Sbjct: 505 Q 505



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 113/289 (39%), Gaps = 4/289 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++ +++C      +A  +   M   G+  D    N L+  +CR     +    F+  
Sbjct: 92  TYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAAACGLFVQM 151

Query: 209 VKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            ++     D  S+ IL++G    G +++A + F +M     W    V  Y   L  L + 
Sbjct: 152 PRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSR--GWCRPGVHTYTVLLDGLCKV 209

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           ++V EA   L  M  +   P +  ++  +  L +        +L + M +   + PD  T
Sbjct: 210 RRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHS-PDCWT 268

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y  +   L K+ +V    K  HE I        L     I       + + A+++   + 
Sbjct: 269 YTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMK 328

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
            N + P   + NE++ G    G++     F  +M    +    VT + L
Sbjct: 329 RNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSL 377



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 125/338 (36%), Gaps = 67/338 (19%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMSFDVMS 174
           + + +D L   G+ E+  +    +   G+ +    + S+   YC  G  D A    + M+
Sbjct: 409 YAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMA 468

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
                 DV   N+L+  +C+ + +  RA++ L+++KK                     +E
Sbjct: 469 SENCMPDVHTYNTLIDGLCKVK-RLDRAIDLLDKMKK-------------------QGIE 508

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-----TL 289
               TF  ++++  W+ +H                  +A K    M    C P     TL
Sbjct: 509 PTTCTFNILIKQMLWDKKHA-----------------DAAKMYEQMISSGCKPDKQTYTL 551

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
           K  ++  +   K  +   AV    + M   G FPD  TYN I +  +        EK F 
Sbjct: 552 KISTDWFEGATKEENIDMAV----VEMHEAGVFPDVETYNAIIKAYVD---AGLKEKAFF 604

Query: 350 EMIKNEWQPTPLNCATAITML---LDADEPEI--------------AIEIWNYILENGIL 392
             +K    P   +C T   +L    + D+ +                 E++  + E+   
Sbjct: 605 AHVKMLSVPIDPDCTTYSILLNYMCNKDDSDAFDNEKIWKMVDVRNLQELFEQMCESDAA 664

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
           P  ++   LL GL N  RL +V     +M    IL+ E
Sbjct: 665 PGISTYKALLRGLCNQCRLEEVEWLLLKMQGNSILLDE 702


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 153/329 (46%), Gaps = 6/329 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+++  +   G  E+    +R M+++G+  ++ T+ ++ D+ C   K  EA+     
Sbjct: 208 YTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRA 267

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M++ GV  ++++ NS+++ +C  + + S   E +  ++ K + PD  ++  L+ G+ KEG
Sbjct: 268 MAVGGVAANLISYNSVINGLC-GKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEG 326

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+ +      EMV +   +P +V+ Y T +  + +   +  A++    M+     P  + 
Sbjct: 327 NLHQGLVLLSEMVGK-GLSP-NVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERT 384

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +D   +      A ++   M+V  G  P  +TYN +        RV E       M
Sbjct: 385 YTTLIDGFCQKGLMNEAYKVLSEMIV-SGFSPSVVTYNALVHGYCFLGRVQEAVGILRGM 443

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           ++    P  ++ +T I       E   A ++   ++E G+LP   + + L+ GL    +L
Sbjct: 444 VERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKL 503

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
            +      EM+ R +   EVT   L  A+
Sbjct: 504 VEAFDLFREMMRRGLPPDEVTYTSLINAY 532



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 157/350 (44%), Gaps = 24/350 (6%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N +++ L   GR  ++   V  M+  G++    T+ ++ + +C  G   + ++    M
Sbjct: 279 SYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEM 338

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G+  +VV   +L++ +C+  N  SRA+E  ++++ + + P+  ++  L++G+ ++G 
Sbjct: 339 VGKGLSPNVVTYTTLINCMCKAGN-LSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGL 397

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + EA K   EM+    ++P  V+ Y   +       +V EA+  LR M      P +  +
Sbjct: 398 MNEAYKVLSEMIVS-GFSPS-VVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSY 455

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           S  +    +  +   A Q+ +  MV  G  PD++TY+ + + L   +++ E    F EM+
Sbjct: 456 STVIAGFCRERELGKAFQMKE-EMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMM 514

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +    P  +   + I       E   A+ + + +++ G LP   + + L+ GL    R  
Sbjct: 515 RRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTK 574

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 462
             +R                   L K FY ES      +++L   C  ++
Sbjct: 575 VAKRL------------------LLKLFYEESVPDDVTYNTLIENCSNNE 606



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 157/379 (41%), Gaps = 43/379 (11%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQR-----LSPYAWNLMVDVLGKNGRFEQMWN 134
           TP     VL  S     + ++F  WA    +      +P+   L + +L    RF +++ 
Sbjct: 38  TPQAASYVLLNSQSDQRTLLNFLTWAQAQAQAHNFFFTPHCKCLALHILV---RF-KLYR 93

Query: 135 AVRVMKEDGVLSLP--TFASIF----DSY--CGAGKYDEAVMSFDVMSM----------- 175
               +  D   +LP  T AS+F    D++  C +     AV    V S+           
Sbjct: 94  TAHSLAADLAATLPDPTGASLFRHLHDTFHLCSSPFSSSAVFDLVVKSLSRLGFVPKALT 153

Query: 176 -------HGVEQDVVAVNSLLSAICRQENQTSRALE-----FLNRVKKIVDPDGDSFAIL 223
                  HG    V++ N++L A+ R+ +   R  +     F + V+  V P+  ++ ++
Sbjct: 154 LLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVI 213

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G   +G++E+    F   +E+   +P +V+ Y T +    + K+V EA+  LR M   
Sbjct: 214 IRGVVSQGDLEKG-LGFMRKMEKEGISP-NVVTYNTLIDASCKKKKVKEAMALLRAMAVG 271

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
                L  +++ ++ L      +   +L + M    G  PD +TYN +     K   +H+
Sbjct: 272 GVAANLISYNSVINGLCGKGRMSEVGELVEEMR-GKGLVPDEVTYNTLVNGFCKEGNLHQ 330

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
                 EM+     P  +   T I  +  A     A+EI++ +   G+ P E +   L+ 
Sbjct: 331 GLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLID 390

Query: 404 GLRNLGRLSDVRRFAEEML 422
           G    G +++  +   EM+
Sbjct: 391 GFCQKGLMNEAYKVLSEMI 409



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 8/194 (4%)

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM- 315
           ++  + +L R   V +AL  L +       PT+  ++  LD L++ + S H  + +D   
Sbjct: 135 FDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNH--RDYDDAE 192

Query: 316 -----MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
                MV +G  P+  TYN+I   ++    + +   F  +M K    P  +   T I   
Sbjct: 193 RVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDAS 252

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
               + + A+ +   +   G+     S N ++ GL   GR+S+V    EEM  + ++  E
Sbjct: 253 CKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDE 312

Query: 431 VTMHKLKKAFYNES 444
           VT + L   F  E 
Sbjct: 313 VTYNTLVNGFCKEG 326


>gi|357134597|ref|XP_003568903.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Brachypodium distachyon]
          Length = 537

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 108/473 (22%), Positives = 194/473 (41%), Gaps = 67/473 (14%)

Query: 38  PRF-PTHLDAPYI-----------SSSARIIC-----EILAHASSD-DIESALACTGIIP 79
           PRF PT +   Y+           S  +R +C      IL  +  D D+  AL       
Sbjct: 51  PRFCPTVVPRGYVLGAPRLCHTSASEDSRDVCIDQVLRILKSSDGDTDLGKALHRFAGEM 110

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFE---QMWN 134
             D+V  VLQ    +   A+ FF WA         P  +  M+D+LG+  + +   Q+++
Sbjct: 111 DEDVVLRVLQKQRSNWQVALLFFNWAAGLPAYAHGPRTYTEMLDILGRMKKVKLMTQLFD 170

Query: 135 AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
            +   +   V++  TFA + + Y GA K  EA+  F     +G E D+V    LL ++CR
Sbjct: 171 EIPEERRGLVVTNRTFAVLLNRYAGAHKVQEAIEMFYKRKDYGFEVDLVGFQILLMSLCR 230

Query: 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
            ++       FL + K    P   S+ I+L GW  +G++ +A + + +++   +  P+ +
Sbjct: 231 YKHVEEAEALFLQK-KDEFPPVIKSWNIILNGWCVKGSLPDAKRIWNQIIAS-KLKPD-L 287

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
             Y TF+ +L +  ++  A+K    M  +   P +   +  +D L        A+ ++  
Sbjct: 288 FTYGTFINSLTKAGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKIPEALDIFR- 346

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML---- 370
            M   G   D  TYN + +   K +R  +V +   +M      P  +  +  +       
Sbjct: 347 EMTDRGCQADVATYNTLIKYFCKIRRTEKVYELLDDMENKGCSPNNMTYSYILKTTEKPK 406

Query: 371 ---------------LDADEPEIAI-------------EIWNYILENGILPLEASANELL 402
                          LD+D   + +             ++W+ +  NG  P + S   ++
Sbjct: 407 DVIHLLQRMEKSGCRLDSDTYNLILNLYVSMKYENGVQQVWDEMERNGSGPDQRSFTIMV 466

Query: 403 VGLRNLGRLSDVRRFAEEMLNR--------RILIYEVTMHKLKKAFYNESRSM 447
            GL + GRL    ++   M +R        RIL+  + M K   A  ++S SM
Sbjct: 467 HGLHSQGRLDQALQYYTTMKSRGMTPEPRTRILVKAIHMKKDGPAVEDQSPSM 519


>gi|255660902|gb|ACU25620.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 484

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  +   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-SAKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFXV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEKMTEARSILKEMMDKYLAPT 289



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FXVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++++ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMTEARSILKEMMDK 284


>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 139/288 (48%), Gaps = 8/288 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDE 165
           +G +    A+  +++VL KN   E+       +  DG++S + ++  I + +C A   D 
Sbjct: 388 QGVKAGIGAYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDN 447

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAIL 223
           A  +F  M + GV  ++V  N+L++  C+    ++  + LE L  ++  + PD  +F+ +
Sbjct: 448 ASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESL--LENGLKPDIFTFSSI 505

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G  +    EEA + F EM+E +  NP  V+ Y   + +L     V  ++K LR M+ E
Sbjct: 506 VDGLCQIKRTEEALECFTEMIE-WGINPNAVI-YNILIRSLCTIGDVARSVKLLRRMQKE 563

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P    ++  + I  ++N    A +L+D  M   G  PD+ TY+   E L ++ R+ E
Sbjct: 564 GISPDTYSYNALIQIFCRMNKVEKAKKLFD-SMSRSGLNPDNYTYSAFIEALSESGRLEE 622

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
            +K F+ M  N   P    C   I +L+  +  E A  I     + GI
Sbjct: 623 AKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQNIIERCRQKGI 670



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 74/379 (19%), Positives = 155/379 (40%), Gaps = 26/379 (6%)

Query: 76  GIIPTPDLVHEVLQLSYDSPS---SAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G+ PT  L + ++     S S   + + F + A        + +N ++  + K G  ++ 
Sbjct: 174 GLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEA 233

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              VR MK+ G   ++ T+  + + +C A + DEA   F+ M   GV  +   V +L+  
Sbjct: 234 LRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPNEATVRALVHG 293

Query: 192 ICRQENQTSRALEFLN----------RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           + R  +  S+ALE L+          RV  ++  D   + +      KE  V        
Sbjct: 294 VFRCVD-PSKALELLSEFLDREQEQERVHFMLACDTVLYCLANNSMAKEMVV-----FLR 347

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
            ++ R  + P + + +   +  L++G ++ E      +++ +     +  +   +++L K
Sbjct: 348 RVLGRGGYFPGNSV-FNVVMACLVKGAELRETCDVFEILRKQGVKAGIGAYLALIEVLYK 406

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                   +++   ++  G   +  +YNMI  C  + K +    + F +M      P  +
Sbjct: 407 NEWREEGDRVYG-QLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPNLV 465

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
              T I         + A ++   +LENG+ P   + + ++ GL  + R  +      EM
Sbjct: 466 TFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFTEM 525

Query: 422 ----LNRRILIYEVTMHKL 436
               +N   +IY + +  L
Sbjct: 526 IEWGINPNAVIYNILIRSL 544



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 91/212 (42%), Gaps = 3/212 (1%)

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           K+ V     ++  L+E   K    EE ++ +G+++   +    +V +Y   +    R K 
Sbjct: 387 KQGVKAGIGAYLALIEVLYKNEWREEGDRVYGQLIS--DGLISNVFSYNMIINCFCRAKL 444

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           +D A +  R M+     P L  F+  ++   K      A +L + ++  +G  PD  T++
Sbjct: 445 MDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLE-NGLKPDIFTFS 503

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
            I + L + KR  E  + F EMI+    P  +     I  L    +   ++++   + + 
Sbjct: 504 SIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKE 563

Query: 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           GI P   S N L+     + ++   ++  + M
Sbjct: 564 GISPDTYSYNALIQIFCRMNKVEKAKKLFDSM 595


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 133/312 (42%), Gaps = 42/312 (13%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           + + ++++ L K G+  +   A RV++E  V +L  + S+   +C AG   +A    + M
Sbjct: 227 WTYTVVINGLVKAGKVAE---AERVLQEMPVPTLANYTSVIGGHCKAGDMGKAYHLLEDM 283

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G + D +  N+L+   CR + +  RA E L  +K                       
Sbjct: 284 KRKGYQGDNLTYNTLIHGHCRLQ-EIDRAYELLEEMKS---------------------- 320

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN-CFPTLKFF 292
                         ++ P+ +  Y+  +  L R K++ EA   L  ++ E+ C P +  +
Sbjct: 321 -------------NDFVPD-IFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSY 366

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +D   K      A QL+ + MV  G  PD +TY+ +   L    R  E   +  EM+
Sbjct: 367 NTLIDGFSKAARVNDAYQLF-LEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMV 425

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
             +  P     ++ I+ L  A E + A  +++ ++ NG  P  A  N L+ GL   GRL 
Sbjct: 426 GKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLC 485

Query: 413 DVRRFAEEMLNR 424
           D +   +EM  R
Sbjct: 486 DAKLRVKEMTER 497



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 155/360 (43%), Gaps = 17/360 (4%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F      GQ      ++ ++  L   GR  +  + +  M    +L  +P ++S+    C 
Sbjct: 386 FLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCR 445

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----P 215
           AG+ D A   FD M  +G + ++   NSL+  +C+    T R  +   RVK++ +    P
Sbjct: 446 AGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCK----TGRLCDAKLRVKEMTERGCSP 501

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           DG ++  L+ G  +    +EA   +   V   E   E        +I  +R   +++A +
Sbjct: 502 DGVTYGTLIVGLCRWSRTDEACDLY---VRSLEQGIEISETSCNVVIASLRC--LEQAQR 556

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
            LRV+      PT  F++  ++ L K N+   A QL +  M+  G  PD  T + +   +
Sbjct: 557 VLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLED-MIGAGIKPDGSTVDALVGAM 615

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP-EIAIEIWNYILENGILPL 394
            +  +      F  EM++   +P+    +T +  L  A +P E  + +   I      P 
Sbjct: 616 CRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCFPD 675

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
           E     L+    N  ++ + R   +E+ ++  +   V  + L K  +  +R+++ +++ L
Sbjct: 676 ELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLF-RTRNLQMVYELL 734



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 174/418 (41%), Gaps = 63/418 (15%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK 140
           LV  +L +  +  S+ V FF WAG  Q  R + + +N   + L + G+ E+   A R+ K
Sbjct: 59  LVGVILHMVKNGESAMV-FFGWAGTRQDFRHTVHTYNCFYEALIRTGQCEE---AYRLFK 114

Query: 141 EDGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           E     L     T+  +    C  GK   A   ++ M   G+   V+    LL+A+C+  
Sbjct: 115 EKWPQELIPDSITYGILIRGLCNFGKLKLACSLYEEMVDRGLRPVVLTCKFLLNALCKSG 174

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           N    AL +  ++  I  P   ++ IL++G  +   V+EA   F EM  +    P +   
Sbjct: 175 N-LELALRYFEKMSSI--PCAATWTILIDGLFRAIRVDEACYYFEEM--KHTAIPNN-WT 228

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM- 315
           Y   +  L++  +V EA + L+ M      PTL  +++ +    K  D   A  L + M 
Sbjct: 229 YTVVINGLVKAGKVAEAERVLQEMP----VPTLANYTSVIGGHCKAGDMGKAYHLLEDMK 284

Query: 316 ------------MVFHGA---------------------FPDSLTYNMIFECLIKNKRVH 342
                        + HG                       PD  TY+++   L + KR+ 
Sbjct: 285 RKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLS 344

Query: 343 EVEKFFHEMIKNEWQPTP--LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           E       + +NE   TP  ++  T I     A     A +++  ++  G  P   + + 
Sbjct: 345 EARDLLGTL-RNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYST 403

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRIL----IYEVTMHKLKKAFYNESRSMRDIFDSL 454
           L+ GL N GR S+   + EEM+ ++IL    +Y   +  L +A   E  +   +FDS+
Sbjct: 404 LIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRA--GELDAASTVFDSM 459



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 99/255 (38%), Gaps = 48/255 (18%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT---FASIFDSY 157
           + R   +G  +S  + N+++  L      EQ    +RV+   G  + PT   +A++ +S 
Sbjct: 526 YVRSLEQGIEISETSCNVVIASLRC---LEQAQRVLRVVLATG--NSPTAFFYATVIESL 580

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPD 216
           C      EA    + M   G++ D   V++L+ A+CRQ+     A+ FL  + ++   P 
Sbjct: 581 CKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVV-AMAFLEEMVRLGSKPS 639

Query: 217 GDSFAILLEGWEKEG------------------------------------NVEEANKTF 240
             +++ LL    K G                                     VEEA    
Sbjct: 640 VGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVL 699

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            E+  + +W  + ++AY T L  L R + +    + LR MK          F+  +    
Sbjct: 700 QEL--KSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREMKRNEFVVNEATFNILIQGFC 757

Query: 301 KLNDSTHAVQLWDIM 315
           +L  +  AV++   M
Sbjct: 758 RLGQTDRAVRVLSEM 772


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 137/290 (47%), Gaps = 6/290 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F     +G + +   +N+++DVL K G+  +  + + VM + G++ +L T+ S+ + +C 
Sbjct: 292 FNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCL 351

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGD 218
            G  + A   F  M   G E DV+    L++  C+  ++   A++  N + ++   PD  
Sbjct: 352 VGDLNSARELFVSMPSKGCEPDVICYTVLINGYCK-TSKVEEAMKLYNGMLQVGKRPDVK 410

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  LL G  + G V +A K FG M  +    P  +  Y  FL  L +   + EA++   
Sbjct: 411 TYGALLTGLFQGGKVGDAKKLFGVM--KVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFN 468

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            +K  N    ++ F+  +D L K      A +L++  +      PD +TYN++     + 
Sbjct: 469 KLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFE-KLPQEELQPDVVTYNIMIHEFCRG 527

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
            +V +    F +M KN   P  +  AT I    ++ + E  +E+ + +++
Sbjct: 528 GQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQ 577



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 124/295 (42%), Gaps = 4/295 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  + D  C  GK  EA    +VM   G+  +++  NSL+   C   +  S    F++ 
Sbjct: 306 TFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSM 365

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K  +PD   + +L+ G+ K   VEEA K +  M++     P+ V  Y   L  L +G 
Sbjct: 366 PSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQ-VGKRPD-VKTYGALLTGLFQGG 423

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +V +A K   VMK       L  +   L+ L K      A++L++ +  ++    D   +
Sbjct: 424 KVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKL-DIECF 482

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N + + L K  ++    + F ++ + E QP  +     I       +   A  ++  + +
Sbjct: 483 NCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEK 542

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI-LIYEVTMHKLKKAFYN 442
           NG  P + +   L+ G     +L  V      M+ R + L   +  H  + A  N
Sbjct: 543 NGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVSLDVNILRHNRRHALQN 597



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 139/339 (41%), Gaps = 41/339 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++  ++  L K   + Q++     M+  G+     T   + +  C   +  E +     +
Sbjct: 98  SFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGI 157

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G   D+V   +L+  +C  E++ S+A     R++K+   P+  ++  L++G  + GN
Sbjct: 158 LRRGYIPDIVTYTTLIKGLC-MEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGN 216

Query: 233 VEEANKTFGEMVE-----RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
           +  A K   EM+         + P  V++Y   +  L + ++ DEA      MK +   P
Sbjct: 217 ISIALKLHQEMLNDSSLYGINFKPV-VISYSIIIDALCKDRREDEARDLFEEMKVQGMTP 275

Query: 288 TLKFFSNAL---------------------------DILVKLNDSTHAVQLWDIMMVFHG 320
           T+  +++ +                           D+L K      A  L ++ M+  G
Sbjct: 276 TVISYTSLMWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEV-MIQRG 334

Query: 321 AFPDSLTYNMIFE--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
             P+ LTYN + E  CL+ +  ++   + F  M     +P  +     I       + E 
Sbjct: 335 IVPNLLTYNSLIEGFCLVGD--LNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEE 392

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
           A++++N +L+ G  P   +   LL GL   G++ D ++ 
Sbjct: 393 AMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKL 431



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 119/283 (42%), Gaps = 21/283 (7%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L +F  +         Y +    ++ M + G+  D   +N LL+ +C   N+    L  +
Sbjct: 96  LSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLC-NVNRVGEGLAVM 154

Query: 207 NRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
             + ++   PD  ++  L++G   E  + +A   F  M ++    P + + Y T +  L 
Sbjct: 155 AGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRM-QKLGCTP-NAITYGTLMKGLC 212

Query: 266 RGKQVDEALKFLRVM------KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH 319
           R   +  ALK  + M       G N  P +  +S  +D L K      A  L++ M V  
Sbjct: 213 RTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKV-Q 271

Query: 320 GAFPDSLTY-NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
           G  P  ++Y ++++E         E ++ F+EM+    QP  +     I +L    +   
Sbjct: 272 GMTPTVISYTSLMWE---------EAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIE 322

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           A ++   +++ GI+P   + N L+ G   +G L+  R     M
Sbjct: 323 AKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSM 365



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 1/152 (0%)

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           +A +F  +M   N  P L  F++ L  L K+   +    L++  M   G  PD  T N++
Sbjct: 79  QAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYN-QMRLSGISPDCCTLNIL 137

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
             CL    RV E       +++  + P  +   T I  L        A  ++  + + G 
Sbjct: 138 LNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGC 197

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
            P   +   L+ GL   G +S   +  +EMLN
Sbjct: 198 TPNAITYGTLMKGLCRTGNISIALKLHQEMLN 229



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 1/134 (0%)

Query: 114 YAWNLMVDVLGKNG-RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y + + ++ L KNG  FE M    ++   +  L +  F  + D  C AGK + A   F+ 
Sbjct: 445 YIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEK 504

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           +    ++ DVV  N ++   CR        + F    K    PD  ++A L+ G+ +   
Sbjct: 505 LPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKK 564

Query: 233 VEEANKTFGEMVER 246
           +E+  +    MV+R
Sbjct: 565 LEKVVELLHMMVQR 578


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 127/297 (42%), Gaps = 15/297 (5%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   A RG  L    +  ++  L + G+  Q  +  + M   G +  + T +++ D  C 
Sbjct: 258 FKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCK 317

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGD 218
           AG+   AV  F  M   G+  + V  ++L+  +C+       ALE L ++KK    PD  
Sbjct: 318 AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC-ALEMLAQMKKAFCTPDTI 376

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ IL++G  K G+VE A   F EM+E     P+ V  Y   +    +    D A     
Sbjct: 377 TYNILIDGLCKSGDVEAARAFFDEMLEA-GCKPD-VYTYNILVSGFCKAGNTDAACGVFD 434

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M   +C P +  +   +  L K    T A  L+   M   G  PDS  Y+ + + L K+
Sbjct: 435 DMSSSHCSPNVVTYGTLISGLCKRRQLTKA-SLYFQHMKERGCPPDSFVYSSLVDGLCKS 493

Query: 339 KRVHEVEKFFHEM----IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
            ++      F EM    + N    T L     I  L  A+  + A+ ++N I + G+
Sbjct: 494 GKLEGGCMLFDEMERSGVANSQTRTRL-----IFHLCKANRVDEAVSLFNAIRKEGM 545



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 155/383 (40%), Gaps = 51/383 (13%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           NL++  L K+G+     +       +G  + + T+ +I D      K  +AV   + ++ 
Sbjct: 134 NLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITA 193

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKEG 231
           +G    +   N+LL+ +C+      R  E ++ ++KIVD    PD  ++  L++G  KE 
Sbjct: 194 NGCTPTIATYNALLNGLCKM----GRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEK 249

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
              EA K F EM  R        + Y   +  L++  ++ +A    + M  + C P +  
Sbjct: 250 RSFEAYKLFKEMALR--GLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVT 307

Query: 292 FSNALDILVKLNDSTHAVQLWDIM-------------MVFHG------------------ 320
            S  +D L K      AV+++  M              + HG                  
Sbjct: 308 LSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMK 367

Query: 321 -AF--PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
            AF  PD++TYN++ + L K+  V     FF EM++   +P        ++    A   +
Sbjct: 368 KAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTD 427

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTM 433
            A  +++ +  +   P   +   L+ GL    +L+    + + M  R       +Y   +
Sbjct: 428 AACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLV 487

Query: 434 HKLKKAFYNESRSMRDIFDSLER 456
             L K+   E   M  +FD +ER
Sbjct: 488 DGLCKSGKLEGGCM--LFDEMER 508



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 2/179 (1%)

Query: 268 KQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
           ++ +EA   +R M+ +    P+LK  +  L  L K      A+  ++     +G   D  
Sbjct: 108 REPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTT-NGCTIDIH 166

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           TY  I + L KNK++ +      ++  N   PT       +  L      E AI++   I
Sbjct: 167 TYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 226

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           ++NG  P   +   L+ GL    R  +  +  +EM  R +++  V    L +      +
Sbjct: 227 VDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGK 285


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 141/310 (45%), Gaps = 11/310 (3%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F+ +F S    G Y+  V     +   G+EQD+ +++ L++  C   ++    L  L+++
Sbjct: 65  FSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHL-HRVDFGLSVLSKI 123

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            K+ ++P   +F  LL G   EG +++    + +M+ R    P +V  Y   + +L +  
Sbjct: 124 LKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVR-GLQP-NVYTYNVIINSLSKSG 181

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           + +EAL FL+ M+   C P +  +S  +D          A  ++D +MV  G  P+  TY
Sbjct: 182 KANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFD-LMVSKGCTPNVYTY 240

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
             +     K +R+ E  +   E ++    P  +   T I+ L  A  P  A +++ YI  
Sbjct: 241 TSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICA 300

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNES 444
           +G  P   +   LL GL   G L +     +EM    +   ++IY + +  L K    + 
Sbjct: 301 HGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKC--GKI 358

Query: 445 RSMRDIFDSL 454
           +  +++F  L
Sbjct: 359 KDGKELFSRL 368



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 133/288 (46%), Gaps = 10/288 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG + + Y +N++++ L K+G+  +    ++ M++ G + ++  ++++ D YC  G+ DE
Sbjct: 161 RGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDE 220

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A   FD+M   G   +V    SL++  C+ E +   A++ L+  ++K + PD  +F  ++
Sbjct: 221 ARSVFDLMVSKGCTPNVYTYTSLMNGYCKIE-RIEEAVQLLDETLRKGLVPDIVTFTTII 279

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  + G    A + F  +      +  +++ Y   L  L +   ++EA    + M+   
Sbjct: 280 SGLCRAGRPLAAQQLFRYICA--HGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRST 337

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P L  ++  +D L K        +L+   ++  G  P+  TY  +   L K   + E 
Sbjct: 338 VKPNLVIYTILIDSLCKCGKIKDGKELFS-RLIDEGLKPNVYTYTALVGALCKEGLIIEA 396

Query: 345 EKFFHEMIKNEWQPTPLNCA--TAITMLLDADEPEIAIEIWNYILENG 390
            K F +M   E   TP  CA    I   L   +P +A ++   ++  G
Sbjct: 397 HKLFRKM--EEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRG 442



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 136/277 (49%), Gaps = 5/277 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+ TF ++ +  C  GK D+ +M +D M + G++ +V   N +++++  +  + + AL F
Sbjct: 131 SIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSL-SKSGKANEALGF 189

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L +++K+   P+  +++ L++G+   G ++EA   F  MV +    P +V  Y + +   
Sbjct: 190 LKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSK-GCTP-NVYTYTSLMNGY 247

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            + ++++EA++ L     +   P +  F+  +  L +      A QL+  +   HG  P+
Sbjct: 248 CKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICA-HGHTPN 306

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TY ++ + L K+  + E    F EM ++  +P  +     I  L    + +   E+++
Sbjct: 307 IMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFS 366

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            +++ G+ P   +   L+  L   G + +  +   +M
Sbjct: 367 RLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKM 403


>gi|224089100|ref|XP_002308636.1| predicted protein [Populus trichocarpa]
 gi|222854612|gb|EEE92159.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 112/479 (23%), Positives = 192/479 (40%), Gaps = 70/479 (14%)

Query: 18  PSSSSTTTSPTSH-NPHRPTRPRFPTHLDAPYISSSARIICEILAHAS---SDDIESALA 73
           PS+    +SPTS+ NP+              Y  +    +C IL          + +AL 
Sbjct: 60  PSADQQNSSPTSNSNPN--------------YHQNDFFTLCNILKDPKIQLGPSLRTALD 105

Query: 74  CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQ 131
            TGI P   L+  V      SP      F WA +  G + S   +N MV+ LGK   F  
Sbjct: 106 RTGIEPELGLIQSVFDHFDSSPKLLHSVFLWAEKKPGFQSSAALFNSMVNFLGKAREFGS 165

Query: 132 MWNAV--RVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS----MHGVEQDVV 183
            W  +  R+   +G  ++S  TFA +   Y  AG  + A+ +F+  S    +H  E    
Sbjct: 166 AWCLLLDRIGGNEGGDLVSSDTFAILIRRYTRAGMSEAAIRTFEYASSLDLIHNSEAGTS 225

Query: 184 AVNSLLSAICRQENQTSRALEFLNR-VKK--IVDPDGDSFAILLEGWEKEGNVEEANKTF 240
               LL ++C+ E     A ++ +R V+K     P    + ILL GW +   ++ A + +
Sbjct: 226 LFEILLDSLCK-EGHVRVATDYFDRKVEKDPCWVPSVRIYNILLNGWFRSRKLKHAERLW 284

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC--------------- 285
            EM ++    P  V+ Y T +    R ++V+ A++ +  MK E                 
Sbjct: 285 LEMKKK-NVKPS-VVTYGTLVEGYSRMRRVERAIELVDEMKREGIKSNAIVYNPIIDALA 342

Query: 286 --------------------FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
                                PT+  +++ +    K  D   A ++   MM+    FP  
Sbjct: 343 EAGRFKEVLGMMEHFFLCEEGPTISTYNSLVKGYCKAGDLVGASKILK-MMISREVFPTP 401

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
            TYN  F    K +++ E    + +MI++ + P  L     + ML + +  ++A++I   
Sbjct: 402 TTYNYFFRHFSKCRKIEEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEERLDLAVQISKE 461

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           +   G     A++      L  + R  +     E+ML R I+   +T H+L   F  + 
Sbjct: 462 MRARGCDMDLATSTMFTHLLCKMQRFEEAFAEFEDMLRRGIVPQYLTFHRLNDEFRKQG 520


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/323 (19%), Positives = 152/323 (47%), Gaps = 8/323 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT---FASIFDSYCGAGKY 163
           +G  L  Y  +++++ L K+G+  +    + ++   G++  PT   + ++ + YC     
Sbjct: 328 KGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLV--PTTVIYNTLINGYCQVRDL 385

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
             A   F+ M    +  D +  N+L++ +C+ E  T      +   K  VDP  ++F  L
Sbjct: 386 RGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTL 445

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++ +   G +E+      +M ++       V+++ + +    +  ++ EA+  L  M  +
Sbjct: 446 IDAYGTAGQLEKCFTVLSDMQQK--GIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYK 503

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
           +  P  + +++ +D  ++  D+  A  L +  M   G     +TYN++ + L ++ ++ E
Sbjct: 504 DVAPNAQVYNSIIDAYIESGDTEQAFLLVE-KMKNSGVSASIVTYNLLLKGLCRSSQIDE 562

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
            E+  + +     +P  ++  T I+   +  + + A+E+   + + GI P   + + L+ 
Sbjct: 563 AEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVS 622

Query: 404 GLRNLGRLSDVRRFAEEMLNRRI 426
            L + GR+ D+    ++ML++ +
Sbjct: 623 ALASAGRVHDMECLYQQMLHKNV 645



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 144/312 (46%), Gaps = 15/312 (4%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY----DSPSSAVDFFRWAGRGQRL 111
           +C+    A ++ +   L  TG++PT  +++  L   Y    D   +   F +   R  R 
Sbjct: 344 LCKDGKVAKAEQVLEMLVHTGLVPTT-VIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRP 402

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
               +N +++ L K     +  + V  M++ GV  S+ TF ++ D+Y  AG+ ++     
Sbjct: 403 DHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVL 462

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEK 229
             M   G++ DV++  S++ A C+   +   A+  L+  + K V P+   +  +++ + +
Sbjct: 463 SDMQQKGIKSDVISFGSVVKAFCKN-GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIE 521

Query: 230 EGNVEEANKTFGEMVERFEWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            G+ E+A      +VE+ + +     ++ Y   L  L R  Q+DEA + +  ++ +   P
Sbjct: 522 SGDTEQAFL----LVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRP 577

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
            +  ++  +       D+  A++L   M  + G  P   TY+ +   L    RVH++E  
Sbjct: 578 DVVSYNTIISACCNKGDTDKALELLQEMNKY-GIRPTLRTYHTLVSALASAGRVHDMECL 636

Query: 348 FHEMIKNEWQPT 359
           + +M+    +P+
Sbjct: 637 YQQMLHKNVEPS 648



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 119/299 (39%), Gaps = 16/299 (5%)

Query: 147 LPTFAS---IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           LP+ +S   + +S    G++ +   +F ++   G   D  A N ++ A C        AL
Sbjct: 119 LPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQA-CVAAGDLDVAL 177

Query: 204 EFLNRVKK---IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF---EWNPEHVLAY 257
             + R+ +      PD  S+ +++ G  + G   +A K F EMV+      W     + Y
Sbjct: 178 AMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNW-----ITY 232

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
            T +   ++G  ++   +    M  +   P +  ++  L  L +         L D  M 
Sbjct: 233 NTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMD-EMA 291

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
            H  FPD  TY+++F+ L +      +   F E +K         C+  +  L    +  
Sbjct: 292 SHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVA 351

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
            A ++   ++  G++P     N L+ G   +  L       E+M +R I    +T + L
Sbjct: 352 KAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNAL 410



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 125/331 (37%), Gaps = 4/331 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N M+D   K G  E  +     M  DG   ++ T+  +    C AG+ DE  +  D M+
Sbjct: 232 YNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMA 291

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            H +  D    + L   + R     +    F   +KK V     + +ILL G  K+G V 
Sbjct: 292 SHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVA 351

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A +   EM+      P  V+ Y T +    + + +  A      MK  +  P    ++ 
Sbjct: 352 KAEQVL-EMLVHTGLVPTTVI-YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNA 409

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            ++ L KL   T A  L  + M   G  P   T+N + +      ++ +      +M + 
Sbjct: 410 LINGLCKLEMVTKAEDLV-MEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQK 468

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
             +   ++  + +       +   A+ I + ++   + P     N ++      G     
Sbjct: 469 GIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQA 528

Query: 415 RRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
               E+M N  +    VT + L K     S+
Sbjct: 529 FLLVEKMKNSGVSASIVTYNLLLKGLCRSSQ 559



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 7/139 (5%)

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           PD+ +YN++   L ++ +  +  K F EM+     P  +   T I   +   + E    +
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 251

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKK 438
            + +L +G  P   + N LL GL   GR+ + R   +EM +  +      Y +    L +
Sbjct: 252 RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 311

Query: 439 AFYNESRSMRDIF-DSLER 456
               ESR+M  +F +SL++
Sbjct: 312 T--GESRTMLSLFAESLKK 328


>gi|255660886|gb|ACU25612.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 484

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPT 289



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 58/301 (19%), Positives = 116/301 (38%), Gaps = 37/301 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + + +SP    +N M++   +  + E+       MK   +  ++ T+ ++   Y    + 
Sbjct: 177 KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQV 236

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP-DGDSFAI 222
           D+A+   + M   G++ + +  ++LL  +C  E  +   +     + K + P D   F  
Sbjct: 237 DDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMR 296

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+    K GN++ A      M+ R    P     Y   +    +  Q D+A+K L  +  
Sbjct: 297 LISSHCKSGNLDAAADVLKAMI-RLSV-PTEAGHYGXLIENFCKXGQYDKAVKLLDKLIE 354

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +             DI+++   + H                +   YN + E L  N +  
Sbjct: 355 K-------------DIILRPQSTLHL---------------EPSAYNPMIEYLCNNGQXX 386

Query: 343 EVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
           + E    ++ K   Q PT LN  T I        P+ A E+   +L   +   +++ N L
Sbjct: 387 KAETLVRQLXKLGVQDPTALN--TLIRGHSQEGSPDSAFELLKIMLRRKVBSEKSAYNSL 444

Query: 402 L 402
           +
Sbjct: 445 V 445


>gi|255660864|gb|ACU25601.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 484

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  +   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-SSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPT 289



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 137/290 (47%), Gaps = 6/290 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F     +G + +   +N+++DVL K G+  +  + + VM + G++ +L T+ S+ + +C 
Sbjct: 300 FNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCL 359

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGD 218
            G  + A   F  M   G E DV+    L++  C+  ++   A++  N + ++   PD  
Sbjct: 360 VGDLNSARELFVSMPSKGCEPDVICYTVLINGYCK-TSKVEEAMKLYNGMLQVGKRPDVK 418

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  LL G  + G V +A K FG M  +    P  +  Y  FL  L +   + EA++   
Sbjct: 419 TYGALLTGLFQGGKVGDAKKLFGVM--KVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFN 476

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            +K  N    ++ F+  +D L K      A +L++  +      PD +TYN++     + 
Sbjct: 477 KLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFE-KLPQEELQPDVVTYNIMIHEFCRG 535

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
            +V +    F +M KN   P  +  AT I    ++ + E  +E+ + +++
Sbjct: 536 GQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQ 585



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 160/347 (46%), Gaps = 15/347 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++++++D L K+ R ++  +    MK  G+  ++ ++ S+   +C  GK++EA   F+ M
Sbjct: 244 SYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEM 303

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGN 232
              GV+ +VV  N L+  +C+ E +   A + L   +++ + P+  ++  L+EG+   G+
Sbjct: 304 VNQGVQPNVVTFNVLIDVLCK-EGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGD 362

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +  A + F  M  +    P+ V+ Y   +    +  +V+EA+K    M      P +K +
Sbjct: 363 LNSARELFVSMPSK-GCEPD-VICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTY 420

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM- 351
              L  L +      A +L+ +M V+ G   D   Y +    L KN  + E  + F+++ 
Sbjct: 421 GALLTGLFQGGKVGDAKKLFGVMKVY-GIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLK 479

Query: 352 ---IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
              IK + +    NC   I  L  A + E A E++  + +  + P   + N ++      
Sbjct: 480 SYNIKLDIE--CFNC--LIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRG 535

Query: 409 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLE 455
           G++       ++M        ++T   L + F+ ES+ +  + + L 
Sbjct: 536 GQVVKANILFQKMEKNGCTPDKITYATLIRGFF-ESKKLEKVVELLH 581



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 134/319 (42%), Gaps = 5/319 (1%)

Query: 126 NGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
            G++E+       M   GV  ++ TF  + D  C  GK  EA    +VM   G+  +++ 
Sbjct: 290 GGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLT 349

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
            NSL+   C   +  S    F++   K  +PD   + +L+ G+ K   VEEA K +  M+
Sbjct: 350 YNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGML 409

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           +     P+ V  Y   L  L +G +V +A K   VMK       L  +   L+ L K   
Sbjct: 410 Q-VGKRPD-VKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGC 467

Query: 305 STHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
              A++L++ +  ++    D   +N + + L K  ++    + F ++ + E QP  +   
Sbjct: 468 LFEAMELFNKLKSYNIKL-DIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYN 526

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             I       +   A  ++  + +NG  P + +   L+ G     +L  V      M+ R
Sbjct: 527 IMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQR 586

Query: 425 RI-LIYEVTMHKLKKAFYN 442
            + L   +  H  + A  N
Sbjct: 587 DVSLDVNILRHNRRHALQN 605



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 147/367 (40%), Gaps = 46/367 (12%)

Query: 94  SPSSAVDFFRWAGRGQRLSPYA-WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151
           + + A  FF          P + +  ++  L K   + Q++     M+  G+     T  
Sbjct: 76  TATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLN 135

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
            + +  C   +  E +     +   G   D+V   +L+  +C  E++ S+A     R++K
Sbjct: 136 ILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLC-MEHRISKAALLFTRMQK 194

Query: 212 I-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-----RFEWNPEHVLAYETFLITLI 265
           +   P+  ++  L++G  + GN+  A K   EM+         + P  V++Y   +  L 
Sbjct: 195 LGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPV-VISYSIIIDALC 253

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           + ++ DEA      MK +   PT+  +++ +           A +L++  MV  G  P+ 
Sbjct: 254 KDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFN-EMVNQGVQPNV 312

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN--------CATA---------IT 368
           +T+N++ + L K  +V E +     MI+    P  L         C            ++
Sbjct: 313 VTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVS 372

Query: 369 MLLDADEPEI------------------AIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M     EP++                  A++++N +L+ G  P   +   LL GL   G+
Sbjct: 373 MPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGK 432

Query: 411 LSDVRRF 417
           + D ++ 
Sbjct: 433 VGDAKKL 439



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 130/314 (41%), Gaps = 36/314 (11%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L +F  +         Y +    ++ M + G+  D   +N LL+ +C   N+    L  +
Sbjct: 96  LSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLC-NVNRVGEGLAVM 154

Query: 207 NRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
             + ++   PD  ++  L++G   E  + +A   F  M ++    P + + Y T +  L 
Sbjct: 155 AGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRM-QKLGCTP-NAITYGTLMKGLC 212

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           R   +  ALK  + M                     LNDS+    L+ I        P  
Sbjct: 213 RTGNISIALKLHQEM---------------------LNDSS----LYGINFK-----PVV 242

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           ++Y++I + L K++R  E    F EM      PT ++  + I       + E A  ++N 
Sbjct: 243 ISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNE 302

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNE 443
           ++  G+ P   + N L+  L   G++ + +   E M+ R I+   +T + L + F    +
Sbjct: 303 MVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGD 362

Query: 444 SRSMRDIFDSLERR 457
             S R++F S+  +
Sbjct: 363 LNSARELFVSMPSK 376


>gi|255660890|gb|ACU25614.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 484

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  +   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-SSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPT 289



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K+G V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 58/301 (19%), Positives = 116/301 (38%), Gaps = 37/301 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + + +SP    +N M++   +  + E+       MK   +  ++ T+ ++   Y    + 
Sbjct: 177 KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQV 236

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP-DGDSFAI 222
           D+A+   + M   G++ + +  ++LL  +C  E  +   +     + K + P D   F  
Sbjct: 237 DDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMR 296

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+    K GN++ A      MV R    P     Y   +    +  Q D+A+K L  +  
Sbjct: 297 LISSHCKSGNLDAAADVLKAMV-RLSV-PTEAGHYGVLIENFCKAGQYDKAVKLLDKLIE 354

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +             DI+++   + H                +   YN + E L  N +  
Sbjct: 355 K-------------DIILRPQSTLHL---------------EPSAYNPMIEYLCNNGQAA 386

Query: 343 EVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
           + E    +++K   Q PT LN  T I        P+   E+   +L   +   +++ N L
Sbjct: 387 KAETLVRQLLKLGVQDPTALN--TLIRGHSQEGSPDSXFELLKIMLRRKVDSEKSAYNSL 444

Query: 402 L 402
           +
Sbjct: 445 V 445


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 159/344 (46%), Gaps = 5/344 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +++N+++D L K G++++       M + GV   + TF+++ D+ C  G   EA    + 
Sbjct: 238 FSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLET 297

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M + G+  D+    SL+   C   +  S    FL+   K  +PD  S+ +L+ G+ K  N
Sbjct: 298 MMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFN 357

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           VEEA K + EM+   +W P+ +  +   L  L    +V +A K   V+K       L   
Sbjct: 358 VEEAMKLYNEMLRVGKW-PD-MKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYIC 415

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           S  LD L K      A++L++ +  ++    D  ++N + + L K +++    + F ++ 
Sbjct: 416 SVFLDGLCKNGCLFEAMELFNELKSYNMKL-DIESFNCLIDGLCKARKLETAWELFEKLS 474

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +   QP  +     I       + + A  ++  + ENG  P   + + LL G     +L 
Sbjct: 475 QEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLE 534

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
           +V +   +M+ + + +   +++ + +   ++    R+  D L+R
Sbjct: 535 EVVKLLHKMIQKDVSL-AASIYTIVEDMVSKDEKCREWLDILQR 577



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 150/345 (43%), Gaps = 17/345 (4%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK 140
           P  +H   + +  S + A+ FF    R    S  ++NL++  L K   + Q+++  + M 
Sbjct: 64  PMFIHNCKKGNITS-TQALQFFDLMMR----SIISFNLLLGALAKIKHYSQVFSLYKKMH 118

Query: 141 EDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT 199
             G+  +  T   + +  C   +  E + +   +   G   DVV   SL+  +C  E++ 
Sbjct: 119 LAGLSPNFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLC-MEHRI 177

Query: 200 SRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER---FEWNPE-HV 254
           S A     R++K+   P+  ++  L++G  + GN+  A K   EM+     +  N + ++
Sbjct: 178 SEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNI 237

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
            +Y   +  L +  +  EA +    M  +   P +  FS  +D L K      A +  + 
Sbjct: 238 FSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLET 297

Query: 315 MMVFHGAFPDSLTYNMIFE--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
           MM+  G  PD  T+  + E  CL+ +  +   ++ F  M    ++P  ++    I     
Sbjct: 298 MML-RGIVPDLFTFTSLIEGFCLVGD--LDSAKELFLSMPSKGYEPDVISYTVLIYGYCK 354

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
               E A++++N +L  G  P   +   LL GL   G++ D ++ 
Sbjct: 355 TFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKL 399


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 136/290 (46%), Gaps = 4/290 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           R   RG + +   + ++V+ L K G  +  +N +  M+   +   +  F +I DS C   
Sbjct: 140 RMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYR 199

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D+A+  F  M   G+  +VV  +SL+S +C     +  +    + ++K ++P+  +F 
Sbjct: 200 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFN 259

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++ + KEG   EA K   +M++R   +P+ +  Y + +       ++D+A +    M 
Sbjct: 260 ALIDAFVKEGKFVEAEKLHDDMIKR-SIDPD-IFTYNSLINGFCMHDRLDKAKQMFEFMV 317

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            ++CFP L  ++  +    K        +L+   M   G   D++TY  + + L  +   
Sbjct: 318 SKDCFPDLDTYNTLIKGFCKSKRVEDGTELFR-EMSHRGLVGDTVTYTTLIQGLFHDGDC 376

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
              +K F +M+ +   P  +  +  +  L +  + E A+E+++Y+ ++ I
Sbjct: 377 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 426



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 149/334 (44%), Gaps = 8/334 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++++   +  +       + ++MK     S+ T +S+ + YC   +  +AV   D 
Sbjct: 46  YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 105

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G   D +   +L+  +    N+ S A+  ++R V++   P+  ++ +++ G  K G
Sbjct: 106 MVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 164

Query: 232 NVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           +++ A     +M   + E +   V+ + T + +L + + VD+AL   + M+ +   P + 
Sbjct: 165 DIDLAFNLLNKMEAAKIEAD---VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVV 221

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +S+ +  L      + A QL   M +     P+ +T+N + +  +K  +  E EK   +
Sbjct: 222 TYSSLISCLCSYGRWSDASQLLSDM-IEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDD 280

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           MIK    P      + I      D  + A +++ +++     P   + N L+ G     R
Sbjct: 281 MIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKR 340

Query: 411 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           + D      EM +R ++   VT   L +  +++ 
Sbjct: 341 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 374



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 132/315 (41%), Gaps = 9/315 (2%)

Query: 92  YDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           Y     A++ F+    +G R +   ++ ++  L   GR+      +  M E  +  +L T
Sbjct: 198 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 257

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLN 207
           F ++ D++   GK+ EA    D M    ++ D+   NSL++  C  +  ++  +  EF+ 
Sbjct: 258 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM- 316

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V K   PD D++  L++G+ K   VE+  + F EM  R        + Y T +  L   
Sbjct: 317 -VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGD--TVTYTTLIQGLFHD 373

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
              D A K  + M  +   P +  +S  LD L        A++++D M        D   
Sbjct: 374 GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL-DIYI 432

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y  + E + K  +V +    F  +     +P  +   T I+ L      + A  +   + 
Sbjct: 433 YTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 492

Query: 388 ENGILPLEASANELL 402
           E+G LP   + N L+
Sbjct: 493 EDGPLPDSGTYNTLI 507



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 119/282 (42%), Gaps = 5/282 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     K+D  +   + M   G+  ++   N L++  CR+ +Q S AL  
Sbjct: 9   SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRR-SQISLALAL 67

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +P   + + LL G+     + +A     +MVE   + P+  + + T +  L
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE-MGYRPD-TITFTTLIHGL 125

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
               +  EA+  +  M    C P L  +   ++ L K  D   A  L + M        D
Sbjct: 126 FLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK-IEAD 184

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            + +N I + L K + V +    F EM     +P  +  ++ I+ L        A ++ +
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 244

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            ++E  I P   + N L+      G+  +  +  ++M+ R I
Sbjct: 245 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI 286



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/336 (20%), Positives = 142/336 (42%), Gaps = 6/336 (1%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S + +N ++  + K  +F+ + +    M+  G+  +L T+  + + +C   +   A+   
Sbjct: 9   SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 68

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEK 229
             M   G E  +V ++SLL+  C  + + S A+  ++++ ++   PD  +F  L+ G   
Sbjct: 69  GKMMKLGYEPSIVTLSSLLNGYCHGK-RISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
                EA      MV+R    P +++ Y   +  L +   +D A   L  M+       +
Sbjct: 128 HNKASEAVALVDRMVQR-GCQP-NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADV 185

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             F+  +D L K      A+ L+  M    G  P+ +TY+ +  CL    R  +  +   
Sbjct: 186 VIFNTIIDSLCKYRHVDDALNLFKEMET-KGIRPNVVTYSSLISCLCSYGRWSDASQLLS 244

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           +MI+ +  P  +     I   +   +   A ++ + +++  I P   + N L+ G     
Sbjct: 245 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHD 304

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           RL   ++  E M+++       T + L K F    R
Sbjct: 305 RLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKR 340


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 150/341 (43%), Gaps = 7/341 (2%)

Query: 95  PSSAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFAS 152
           P    D +R        ++ Y  N+MV    K  +F ++   +  M++  V   + T   
Sbjct: 140 PHLTADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNV 199

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + D+   AG  + A+   D M   G++  +V  NS+L  + R   +  +A E    +   
Sbjct: 200 MVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRN-GRWDKAREVFRAMDAC 258

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            V PD  SF +L+ G+ + G +EEA + + EM  R    P+ V+++   +    R  ++D
Sbjct: 259 GVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGR-RVTPD-VVSFSCLIGLFTRRGEMD 316

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
            A ++LR M+     P    ++  +    +      A+++ D M+ F G  PD +TYN +
Sbjct: 317 HAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAF-GCLPDVVTYNTL 375

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
              L K +R+ + E+  +EM +    P      T I         E A++ ++ I +  +
Sbjct: 376 LNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRL 435

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
            P   + N L+ G+   G L       ++M +R I    VT
Sbjct: 436 RPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVT 476



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 165/351 (47%), Gaps = 7/351 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +     +N ++  L +NGR+++     R M   GV   + +F  +   +C AG+ +E
Sbjct: 223 KGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEE 282

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A+  +  M    V  DVV+ + L+    R+  +   A E+L  +++  + PDG  + +++
Sbjct: 283 ALRFYKEMRGRRVTPDVVSFSCLIGLFTRR-GEMDHAAEYLREMREFGLMPDGVIYTMVI 341

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ + G + EA +   EMV  F   P+ V+ Y T L  L + +++ +A + L  MK   
Sbjct: 342 GGFCRAGLMLEALRVRDEMVA-FGCLPD-VVTYNTLLNGLCKERRLSDAEELLNEMKERG 399

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P L  F+  +    +  +   A+Q +D +       PD +TYN + + + +   + + 
Sbjct: 400 VPPDLCTFTTLIHGYCRDGNIEKALQFFDTISD-QRLRPDIVTYNTLIDGMCRQGDLGKA 458

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            + + +M   E  P  +  +  I    +  + + A    + ++  GI+P   + N ++ G
Sbjct: 459 NELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKG 518

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLE 455
               G +S  ++F  +M + +++   +T + L   +  E + M + F+ L+
Sbjct: 519 YCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGK-MHEAFNLLK 568



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 127/280 (45%), Gaps = 6/280 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++ L K  R       +  MKE GV   L TF ++   YC  G  ++A+  FD +S
Sbjct: 372 YNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTIS 431

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
              +  D+V  N+L+  +CRQ     +A E  + +  + + P+  +++IL++   ++G V
Sbjct: 432 DQRLRPDIVTYNTLIDGMCRQ-GDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQV 490

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A     EMV +      +++ Y + +    R   V +  +FL  M+ +   P L  ++
Sbjct: 491 DNAFAFLDEMVNK--GIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYN 548

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +   VK      A  L  IM       PD++TYNMI      +  + E +  + +M  
Sbjct: 549 TLIHGYVKEGKMHEAFNLLKIME-NENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGA 607

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
              +P      + I   + A   + + ++ + +L+ G+ P
Sbjct: 608 RGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAP 647


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 167/391 (42%), Gaps = 49/391 (12%)

Query: 96  SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIF 154
           S A+ FF+ +     +S  ++N+++        FE +   +R MK  G+ S   T   I 
Sbjct: 113 SDALGFFQSSISEPNVS--SFNILLRGFAARDDFEVVNALLREMKSRGITSNGATHGVIL 170

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIV 213
            + C     D+AV  F+ +S +  E  +     L+  +C+  ++  RA + F   ++K  
Sbjct: 171 SALCARRDLDKAVSYFNSVSPNKCEPTLFTYTVLVDGLCKA-HKVERACDVFEEMIRKGY 229

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  +++ L++G  K G V+EA K    MV R    P   +AY + +  L +  ++ EA
Sbjct: 230 KPDIIAYSSLIDGLSKAGRVDEARKLVDLMVAR--GPPPTAVAYTSIVAGLCKCGRIQEA 287

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
           +K ++ M+     P +  +S  +   + +     A  + +  M      PD+++Y M  E
Sbjct: 288 VKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAVME-EMADRDCAPDTISYTMFIE 346

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQP---------------TPLNCATAITMLLD--ADEP 376
            L    R  E EK F  M++   +P                 +  AT +  L+D  A +P
Sbjct: 347 ALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKP 406

Query: 377 ------------------EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 418
                             E A+E++  IL++GILP   + N ++  L  L ++ +     
Sbjct: 407 NRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELL 466

Query: 419 EEMLNRR------ILIYEVTMHKLKKAFYNE 443
            EM  R+      I+ Y + +H L K    E
Sbjct: 467 REMQRRKEELEPSIVTYSMIIHGLGKVGMEE 497



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 148/355 (41%), Gaps = 47/355 (13%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + + ++VD L K  + E+  +    M   G    +  ++S+ D    AG+ DEA    D+
Sbjct: 199 FTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDL 258

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG----DSFAILLEGWE 228
           M   G     VA  S+++ +C+      R  E +  ++++         D+++ ++ G+ 
Sbjct: 259 MVARGPPPTAVAYTSIVAGLCK----CGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYI 314

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
             G VE+A     EM +R +  P+  ++Y  F+  L    + +EA K    M  + C P 
Sbjct: 315 GMGKVEKAFAVMEEMADR-DCAPD-TISYTMFIEALYSIGRREEAEKVFETMVEKGCKPD 372

Query: 289 LKFFSNALDILVK---LNDSTHAVQLWD-------------IMMVF-------------- 318
           +  +   +D   K   +  +TH ++L D             IM  F              
Sbjct: 373 MHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQ 432

Query: 319 ----HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI--KNEWQPTPLNCATAITMLLD 372
                G  P ++TYN +   L K K++ E  +   EM   K E +P+ +  +  I  L  
Sbjct: 433 RILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGK 492

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
               E A ++   +++NG++P   +   L+  L   G++S      EEML   I 
Sbjct: 493 VGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIF 547



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 139/344 (40%), Gaps = 39/344 (11%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYD 164
            RG   +  A+  +V  L K GR ++    ++ M+   +   + T++ I   Y G GK +
Sbjct: 261 ARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVE 320

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           +A    + M+      D ++    + A+     +      F   V+K   PD  ++ I++
Sbjct: 321 KAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIII 380

Query: 225 EGWEKEGNVEEA--------------NKTFGEMV-------ERFEWNPE----------- 252
           + + KEG++  A              N+    M+        R E   E           
Sbjct: 381 DNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGIL 440

Query: 253 -HVLAYETFLITLIRGKQVDEALKFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAV 309
              + Y T +  L + K++DEAL+ LR M  + E   P++  +S  +  L K+     A 
Sbjct: 441 PSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAF 500

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
            L    M+ +G  PD  TY  + + L    +V    +   EM+K    P      T + +
Sbjct: 501 DLL-AEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQI 559

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLR-NLGRLS 412
           L  +D  + A ++   ++ NG  P E +   +  G R  L RLS
Sbjct: 560 LCRSD-VDAAWDLLQEMMRNGHTPNEFTFKAVEKGFRLQLDRLS 602



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 118/286 (41%), Gaps = 9/286 (3%)

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G    +   NSLL A+ R     S AL F      I +P+  SF ILL G+    + E  
Sbjct: 91  GFSHTLFTRNSLLLALVRG-GHLSDALGFFQ--SSISEPNVSSFNILLRGFAARDDFEVV 147

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
           N    EM  R      +   +   L  L   + +D+A+ +   +    C PTL  ++  +
Sbjct: 148 NALLREMKSR--GITSNGATHGVILSALCARRDLDKAVSYFNSVSPNKCEPTLFTYTVLV 205

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
           D L K +    A  +++  M+  G  PD + Y+ + + L K  RV E  K    M+    
Sbjct: 206 DGLCKAHKVERACDVFE-EMIRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGP 264

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
            PT +   + +  L      + A++    +    + P   + + ++ G   +G++     
Sbjct: 265 PPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFA 324

Query: 417 FAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL-ERRCK 459
             EEM +R      ++     +A Y+  R      +F+++ E+ CK
Sbjct: 325 VMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCK 370


>gi|255660868|gb|ACU25603.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 484

 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  +   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-SSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPT 289



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284


>gi|255660874|gb|ACU25606.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 484

 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  +   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-SSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPT 289



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 58/301 (19%), Positives = 118/301 (39%), Gaps = 37/301 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + + +SP    +N M++   +  + E+       MK   +  ++ T+ ++   Y    + 
Sbjct: 177 KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQV 236

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP-DGDSFAI 222
           D+A+   + M   G++ + +  ++LL  +C  E  +   +     + K + P D   F  
Sbjct: 237 DDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFLR 296

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+    K GN++ A      M+ R    P     Y   +    +  Q D+A+K L  +  
Sbjct: 297 LISSHCKSGNLDAAADVLKAMI-RLSV-PTEAGHYGILIENFCKAGQYDKAVKLLDKLIE 354

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +             DI+++   + H                +   YN++ E L  N +  
Sbjct: 355 K-------------DIILRPQSTLHL---------------EPSAYNLMIEYLCNNGQAS 386

Query: 343 EVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
           + E    +++K   Q PT LN  T I        P+ A E+   +L   +   +++ N L
Sbjct: 387 KAETLVRQLMKLGVQDPTALN--TLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNSL 444

Query: 402 L 402
           +
Sbjct: 445 V 445


>gi|255660862|gb|ACU25600.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 484

 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  +   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-SSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPT 289



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284


>gi|255660896|gb|ACU25617.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 484

 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPT 289



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284


>gi|255660882|gb|ACU25610.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 484

 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPT 289



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 58/301 (19%), Positives = 117/301 (38%), Gaps = 37/301 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + + +SP    +N M++   +  + E+       MK   +  ++ T+ ++   Y    + 
Sbjct: 177 KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQV 236

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS-FAI 222
           D+A+   + M   G++ + +  ++LL  +C  E  +   +     + K + P  +S F  
Sbjct: 237 DDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMR 296

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+    K GN++ A      M+ R    P     Y   +    +  Q D+A+K L  +  
Sbjct: 297 LISSHCKSGNLDAAADVLKAMI-RLSV-PTEAGHYGXLIENFCKVGQYDKAVKLLDKLIE 354

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +             DI+++   + H                +   YN + E L  N +  
Sbjct: 355 K-------------DIILRPQSTLHL---------------EPSAYNPMIEYLCNNGQAX 386

Query: 343 EVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
           + E    ++ K   Q PT LN  T I        P+ A E+   +L   +   +++ N L
Sbjct: 387 KAETLVRQLXKLGVQDPTALN--TLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNSL 444

Query: 402 L 402
           +
Sbjct: 445 V 445


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 148/331 (44%), Gaps = 9/331 (2%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A+D F +  + +R+SP  + +N ++  L    R+++    +  M    ++ ++ TF  + 
Sbjct: 254 ALDIFSYM-KAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLV 312

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC-RQENQTSRALEFLNRVKKIV 213
           D+ C  GK  EA   F  M+  GVE DVV  +SL+     R E   +R L F   + K  
Sbjct: 313 DAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKL-FDAMITKGC 371

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  S+ IL++G+ K   ++EA + F EM+ +    P++V  Y T +  L +  ++ EA
Sbjct: 372 KPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQ-GLTPDNV-NYNTLIHGLCQLGRLREA 429

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
               + M      P L  +S  LD   K      A +L+ +M   +   PD   YN++ +
Sbjct: 430 QDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLK-PDIAMYNILID 488

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            + K   + +  K F E+      P      T I  L      + A+E +  +  +G  P
Sbjct: 489 AMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPP 548

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            E S N ++ G       S   +   EM +R
Sbjct: 549 DEFSYNVIIRGFLQYKDESRAAQLIGEMRDR 579



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 134/314 (42%), Gaps = 6/314 (1%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
           LSP  Y  ++++D      R +  ++    M + G+     TF ++ +  C  GK+ +AV
Sbjct: 126 LSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAV 185

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
             FD     G +  V    ++++ +C+    T+ A  F    +    P+  ++ IL++  
Sbjct: 186 EFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSL 245

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            K+  V EA   F  M  +   +P+ +  Y + +  L   ++  EA   L  M   N  P
Sbjct: 246 CKDKLVNEALDIFSYMKAK-RISPD-IFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMP 303

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
            +  F+  +D + K    + A  ++  M    G  PD +TY+ +         + E  K 
Sbjct: 304 NIFTFNVLVDAICKEGKVSEAQGVFKTMTEM-GVEPDVVTYSSLMYGYSLRMEIVEARKL 362

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           F  MI    +P   +    I     A   + A +++N ++  G+ P   + N L+ GL  
Sbjct: 363 FDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQ 422

Query: 408 LGRLSDVRRFAEEM 421
           LGRL + +   + M
Sbjct: 423 LGRLREAQDLFKNM 436



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 149/345 (43%), Gaps = 12/345 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++ L K G+F Q        +  G   ++ T+ +I +  C  G+   A   F  M 
Sbjct: 168 FNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKME 227

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G + +VV  N L+ ++C+ +   + AL+  + +K K + PD  ++  L++G       
Sbjct: 228 EAGCQPNVVTYNILIDSLCK-DKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRW 286

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA+    EM       P ++  +   +  + +  +V EA    + M      P +  +S
Sbjct: 287 KEASALLNEMTS-LNIMP-NIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYS 344

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
           + +       +   A +L+D M+   G  PD+ +YN++ +   K KR+ E ++ F+EMI 
Sbjct: 345 SLMYGYSLRMEIVEARKLFDAMIT-KGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIH 403

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               P  +N  T I  L        A +++  +  NG LP   + + LL G    G L  
Sbjct: 404 QGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGK 463

Query: 414 VRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
             R    M    L   I +Y + +  + K  +   +  R +F  L
Sbjct: 464 AFRLFRVMQSTYLKPDIAMYNILIDAMCK--FGNLKDARKLFSEL 506



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 8/195 (4%)

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           + +D+AL     M      P +  F+  L  +VK+     AV      M   G  PD  T
Sbjct: 73  RNIDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYT 132

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
            +++ +C    +RV      F +MIK   QP  +   T I  L    +   A+E ++   
Sbjct: 133 LSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFE 192

Query: 388 ENGILPLEASANELLVGLRNLGRLSDV----RRFAEEMLNRRILIYEVTMHKL-KKAFYN 442
            +G  P   +   ++ GL  +G  +      ++  E      ++ Y + +  L K    N
Sbjct: 193 ASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVN 252

Query: 443 ESRSMRDIFDSLERR 457
           E+    DIF  ++ +
Sbjct: 253 EA---LDIFSYMKAK 264


>gi|255660898|gb|ACU25618.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 484

 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKZGIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPT 289



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KZG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKZGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 58/301 (19%), Positives = 116/301 (38%), Gaps = 37/301 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + + +SP    +N M++   +  + E+       MK   +  ++ T+ ++   Y    + 
Sbjct: 177 KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQV 236

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP-DGDSFAI 222
           D+A+   + M   G++ + +  ++LL  +C  E  +   +     + K + P D   F  
Sbjct: 237 DDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMR 296

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+    K GN++ A      M  R    P     Y   +    +  Q D+A+K L  +  
Sbjct: 297 LISSHCKSGNLDAAADVLKAMX-RLSV-PTEAGHYGVLIENFCKXGQYDKAVKLLDKLIE 354

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +             DI+++   + H                +   YN + E L  N +  
Sbjct: 355 K-------------DIILRPQSTLHL---------------EPSAYNPMIEYLCNNGQAA 386

Query: 343 EVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
           + E    +++K   Q PT LN  T I        P+ A E+   +L   +   +++ N L
Sbjct: 387 KAETLVRQLLKLGVQDPTALN--TLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNSL 444

Query: 402 L 402
           +
Sbjct: 445 V 445


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 122/277 (44%), Gaps = 4/277 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           R   RG  ++   +NL+V  L  +GR  + +  V  M   G+ L + T+  + + +C  G
Sbjct: 282 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEG 341

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
              +A+  F+ MS  GV   VV   SL+ A+ ++         F   V++ + PD   + 
Sbjct: 342 NVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 401

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+      GN++ A +  GEM E+    P+ V  Y T +  L    +VDEA K +  M 
Sbjct: 402 ALINSHSTSGNIDRAFEIMGEM-EKKRIAPDDV-TYNTLMRGLCLLGRVDEARKLIDEMT 459

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
                P L  ++  +       D   A+++ + MM   G  P  LTYN + + L KN + 
Sbjct: 460 KRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM-NKGFNPTLLTYNALIQGLCKNGQG 518

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            + E    EM++N   P      + I  L   DE  I
Sbjct: 519 DDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAI 555



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 153/377 (40%), Gaps = 50/377 (13%)

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-- 148
           S   P+ A++  R   R   ++   +N ++      GR +   + +R M+E G ++ P  
Sbjct: 166 SAGKPARALELLRQMPRPNAVT---YNTVIAGFCSRGRVQAALDIMREMRERGGIA-PNQ 221

Query: 149 -TFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQ----------- 195
            T+ ++   +C  G+ DEAV  FD M   G V+ + V  N+L+   C Q           
Sbjct: 222 YTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRD 281

Query: 196 -----------------------ENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
                                  + + + A E +  +  K +  D  ++ IL+ G  KEG
Sbjct: 282 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEG 341

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           NV++A + F  M  R       V+ Y + +  L +  QV E  K           P L  
Sbjct: 342 NVKKALEIFENMSRRGVR--ATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVL 399

Query: 292 FSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
           + NAL  +   + S +  + ++IM  M      PD +TYN +   L    RV E  K   
Sbjct: 400 Y-NAL--INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLID 456

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM K   QP  +   T I+      + + A+ I N ++  G  P   + N L+ GL   G
Sbjct: 457 EMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 516

Query: 410 RLSDVRRFAEEMLNRRI 426
           +  D     +EM+   I
Sbjct: 517 QGDDAENMVKEMVENGI 533



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 140/350 (40%), Gaps = 48/350 (13%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L   TF  +    C AGK   A+     M       + V  N++++  C +  +   AL+
Sbjct: 152 LCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSR-GRVQAALD 206

Query: 205 FLN--RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
            +   R +  + P+  ++  ++ GW K G V+EA K F EM+ + E  PE V+ Y   + 
Sbjct: 207 IMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM-YNALIG 265

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL----------- 311
                 ++D AL +   M       T+  ++  +  L      T A +L           
Sbjct: 266 GYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAL 325

Query: 312 ----WDIMMVFH-------------------GAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
               ++I++  H                   G     +TY  +   L K  +V E +K F
Sbjct: 326 DVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLF 385

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            E ++   +P  +     I     +   + A EI   + +  I P + + N L+ GL  L
Sbjct: 386 DEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLL 445

Query: 409 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR-DIFDSLERR 457
           GR+ + R+  +EM  R I    VT + L   +     SM+ D+ D+L  R
Sbjct: 446 GRVDEARKLIDEMTKRGIQPDLVTYNTLISGY-----SMKGDVKDALRIR 490


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 156/352 (44%), Gaps = 15/352 (4%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYD 164
           G G R     +N +V+   K GR E+ ++    MK +GV++ + TF++  D++C  G   
Sbjct: 257 GCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVR 316

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAIL 223
           EA+  F  M M G++ + V    L+   C+   +   AL   N  V++ V  +  ++ +L
Sbjct: 317 EAMKLFAQMRMKGMKPNEVTYTCLVDGTCKA-GRLDDALVLTNEMVQQGVPLNVVTYTVL 375

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRV 279
           ++G  KEG V EA   F  ++ER       + A E    TLI G    K  + AL  L  
Sbjct: 376 VDGLCKEGKVAEAEDVF-RLMER-----AGIRANELLYTTLIHGHFVYKNSERALSLLSE 429

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           MK +     +  +   +  L  L     A  L +  M   G  P+++ Y  I +   K +
Sbjct: 430 MKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLN-KMDECGLKPNNVIYTNIMDACFKAR 488

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           +  E      +M+ + ++P  +     +  L  A   + AI  +N +++ G+ P   +  
Sbjct: 489 KESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYT 548

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIF 451
            L+ GL   GRL       +EM+++ + +  V    L      +  +++D F
Sbjct: 549 ALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQG-NLQDAF 599



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 54/223 (24%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++ D  C AG  DEA+  F+ M   G+E +V A  +L+  +C+        L     
Sbjct: 511 TYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEM 570

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K +  D      L++G  K+GN+++A     +M+                      G 
Sbjct: 571 IDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMIN--------------------SGL 610

Query: 269 QVDEALKFLRVMKGENC----FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
           Q+D        + G  C    F  L     A ++L +              M+ +G  PD
Sbjct: 611 QLD--------LYGYTCFVWGFCNLNMIQEAREVLSE--------------MIENGITPD 648

Query: 325 SLTYNMIFECLI-KNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
           ++ YN    CLI K +++  +E+    +++NE + + L+C  A
Sbjct: 649 AVVYN----CLINKCQKLGNMEE--AAILQNEME-SLLSCTNA 684


>gi|255660900|gb|ACU25619.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 481

 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKZGIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTXINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDXALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPT 289



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KZG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKZGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN       + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTXINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDXAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 79/179 (44%), Gaps = 23/179 (12%)

Query: 135 AVRVMKEDGVLSLPT----FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV------- 183
           A  V+K    LS+PT    +  + +++C  G+YD+AV   D +    +E+D++       
Sbjct: 310 AADVLKAMXRLSVPTEAGHYGVLIENFCKXGQYDKAVKLLDKL----IEKDIILRPQSTL 365

Query: 184 -----AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
                A N  +  +C    Q  +A   + ++ K+   D  +   L+ G  +EG+ + A +
Sbjct: 366 HLEPSAYNPXIEYLC-NNGQAXKAETLVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFE 424

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
               M+ R + + E   AY + + + ++  +  +A   L  M   +  P    F + ++
Sbjct: 425 LLKIMLRR-KVDSEKS-AYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSSLFRSVME 481


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 148/342 (43%), Gaps = 19/342 (5%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG     + +N++   L K G+ ++ +  VR +   G    + T+  +  +    GK+DE
Sbjct: 144 RGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDE 203

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK----KIVDPDGDSFA 221
                  +   G E +VV  + L+S++CR      +  E +N VK    K + PD   + 
Sbjct: 204 GEKWMSEIFSRGCEPNVVTYSILISSLCRD----GKIEESVNLVKVMKEKGLTPDAYCYD 259

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+  + +EG ++ A +    M+   +     ++ Y T +  L +    D A++    + 
Sbjct: 260 PLIAAFCREGKLDMAIEFLDCMI--CDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLD 317

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
              C P +  ++  L  L    D   A+ +    M+  G  PD +TYN +  CL ++  V
Sbjct: 318 EVGCPPNVSSYNTMLSALWSSGDRYRALGMIS-QMLSKGIDPDVITYNSLISCLCRDGMV 376

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E      +M+   +QP  ++  T +  L  A   + AIE+   ++ENG  P E +   L
Sbjct: 377 DEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLL 436

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRIL---IYEVTMHKLKKAF 440
           + G+      S  R  A E+ N   +   I E +  +L K F
Sbjct: 437 IEGI----GFSGSRTQAMELANSLYIMNAISEDSFKRLNKTF 474



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 141/330 (42%), Gaps = 11/330 (3%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           N+M+      G+ +        + +D     +L T+  + ++Y   G  DEA+   D M 
Sbjct: 83  NIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEML 142

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G+E D    N +   +C+ E +  RA EF+  +  +   PD  ++ ILL     +G  
Sbjct: 143 SRGLEPDTFTYNVITRGLCK-EGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKW 201

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +E  K   E+  R      +V+ Y   + +L R  +++E++  ++VMK +   P    + 
Sbjct: 202 DEGEKWMSEIFSR--GCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYD 259

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +    +      A++  D  M+  G  PD + YN I   L KN       + F ++ +
Sbjct: 260 PLIAAFCREGKLDMAIEFLDC-MICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDE 318

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               P   +  T ++ L  + +   A+ + + +L  GI P   + N L+  L   G + +
Sbjct: 319 VGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDE 378

Query: 414 VRRFAEEMLNRR----ILIYEVTMHKLKKA 439
                 +ML+ R    I+ Y+  +  L KA
Sbjct: 379 AIGLLADMLSGRFQPNIVSYKTVLLGLCKA 408



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 115/276 (41%), Gaps = 9/276 (3%)

Query: 135 AVRVM---KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           A RVM   ++ G   +  + ++   +C A + + A    D M   G   DVV  N ++  
Sbjct: 29  ATRVMGILEKHGKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGT 88

Query: 192 ICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
            C +  +   AL+    + K     P   ++ IL+E +  EG ++EA K   EM+ R   
Sbjct: 89  FCGK-GKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSR-GL 146

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
            P+    Y      L +  +VD A +F+R +    C P +  ++  L  L+         
Sbjct: 147 EPD-TFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEG- 204

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           + W   +   G  P+ +TY+++   L ++ ++ E       M +    P        I  
Sbjct: 205 EKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAA 264

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
                + ++AIE  + ++ +G LP   + N ++  L
Sbjct: 265 FCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAAL 300



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 5/181 (2%)

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
           + DV+    L+       N   +A   +  ++K   PD  ++  ++ G+ K   +E A K
Sbjct: 7   QPDVILCTKLIKGFFNSRN-IDKATRVMGILEKHGKPDVFAYNAVISGFCKANRIESA-K 64

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK-FLRVMKGENCFPTLKFFSNALD 297
           T  + ++R  ++P+ V+ +   + T     ++D ALK F  ++K  NC PTL  ++  ++
Sbjct: 65  TVLDRMKRKGFSPD-VVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIE 123

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
             +       A++L D M+   G  PD+ TYN+I   L K  +V    +F   +     +
Sbjct: 124 AYILEGGIDEALKLLDEMLS-RGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCK 182

Query: 358 P 358
           P
Sbjct: 183 P 183


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 155/356 (43%), Gaps = 12/356 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F     RG R   Y +N ++  + K G  ++  + VR +   G    + ++  +  S+  
Sbjct: 224 FDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLN 283

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
             ++++       M + G E +VV  + L+S+ CR E +   A+  L  +K K + PD  
Sbjct: 284 KSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCR-EGRVREAVNVLEVMKEKGLTPDSY 342

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  L+  + KEG ++ A +   +MV   +     ++ Y T L TL +    D AL    
Sbjct: 343 SYDPLISAFCKEGRLDLAIEYLEKMVS--DGCLPDIVNYNTILATLCKFGCADLALDVFE 400

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            +    C PT++ ++     L    +   A+++    M+  G  PD +TYN +  CL ++
Sbjct: 401 KLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMIS-EMIRKGIDPDEITYNSLISCLCRD 459

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
             V E      +M    +QPT ++    +  +  A      IE+   ++E G LP E S 
Sbjct: 460 GLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSY 519

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
             L+ G+   G  ++    A   L R  +I   +  +L K F      M D++  L
Sbjct: 520 VLLIEGIAYAGWRAEAMELANS-LYRLGVISGDSSKRLNKTF-----PMLDVYKGL 569



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 116/270 (42%), Gaps = 21/270 (7%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           ++ ++   +  A + D A   FD M   G   DVV  N ++ ++C +  +   A E ++ 
Sbjct: 133 SYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSR-GKLELAFEVMDE 191

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +K    P   ++ IL+E    EG + EA + F E+V R    P+ +  Y   +  + + 
Sbjct: 192 LLKDGCKPSVITYTILIEATILEGRINEALELFDELVSR-GLRPD-LYTYNAIIRGICKE 249

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVK--LNDSTHAVQLWD----IM--MVFH 319
              D AL F+R +    C P +  +    +IL++  LN S      W+    +M  MV  
Sbjct: 250 GMEDRALDFVRHLSARGCNPDVVSY----NILLRSFLNKSR-----WEDGERLMKDMVLS 300

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
           G  P+ +T++++     +  RV E       M +    P   +    I+        ++A
Sbjct: 301 GCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLA 360

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLG 409
           IE    ++ +G LP   + N +L  L   G
Sbjct: 361 IEYLEKMVSDGCLPDIVNYNTILATLCKFG 390



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/305 (18%), Positives = 127/305 (41%), Gaps = 37/305 (12%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + +  C AGK++E++   + +   G + DVV    L+       N   +A+  +  ++  
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRN-LKKAMRVMEILETY 126

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
            DPD  S+  ++ G+ K   ++ AN+ F  M  R  ++P+ V+ Y   + +L    +++ 
Sbjct: 127 GDPDVYSYNAMISGFSKANQIDSANQVFDRMRSR-GFSPD-VVTYNIMIGSLCSRGKLEL 184

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM---------------- 316
           A + +  +  + C P++  ++  ++  +       A++L+D ++                
Sbjct: 185 AFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIR 244

Query: 317 --------------VFH----GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
                         V H    G  PD ++YN++    +   R  + E+   +M+ +  +P
Sbjct: 245 GICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEP 304

Query: 359 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 418
             +  +  I+          A+ +   + E G+ P   S + L+      GRL     + 
Sbjct: 305 NVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYL 364

Query: 419 EEMLN 423
           E+M++
Sbjct: 365 EKMVS 369



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 97/216 (44%), Gaps = 23/216 (10%)

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMK--GENCFPTLKFFS 293
           F E V    + P+ VL  +     LI+G    + + +A++ + +++  G+   P +  ++
Sbjct: 84  FLESVVSKGFKPDVVLCTK-----LIKGFFNSRNLKKAMRVMEILETYGD---PDVYSYN 135

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +    K N    A Q++D M    G  PD +TYN++   L    ++    +   E++K
Sbjct: 136 AMISGFSKANQIDSANQVFDRMRS-RGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLK 194

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG---- 409
           +  +P+ +     I   +       A+E+++ ++  G+ P   + N ++ G+   G    
Sbjct: 195 DGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDR 254

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            L  VR  +    N  ++ Y +    L ++F N+SR
Sbjct: 255 ALDFVRHLSARGCNPDVVSYNI----LLRSFLNKSR 286


>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
          Length = 726

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 172/394 (43%), Gaps = 34/394 (8%)

Query: 65  SDDIESALACTGIIPTPDLVHEVLQL-SYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVD 121
           S  +E+ L     + +P  V  VL+  +      A +FFRWA R  R   +P  ++ M+ 
Sbjct: 76  SPKLEAQLRQLLRVLSPPQVRAVLRAQARGDVRRAFEFFRWADRQWRYRHAPEVFDEMLS 135

Query: 122 VLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
           +L      +     VR+M   GV      FA +  SY  AGK   A+    +M   G   
Sbjct: 136 LLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAP 195

Query: 181 DV----VAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
           D+    +AVN L+ A      +  +ALEF  R++++ V+PD  ++  L++G      V +
Sbjct: 196 DISICNMAVNVLVVA-----GRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVD 250

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSN 294
           A +  G M++     P   ++Y T +  L + K+V+E    L+ M+ +   FP    ++ 
Sbjct: 251 AMEMIGVMLQ--NGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNV 308

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGA--FPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
            +  L K     HA +  + +    G     D + Y+ I      N R+ E ++   EMI
Sbjct: 309 LIHGLAK---HGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMI 365

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
               QP  +  +T +       E + A ++  ++ +N   P   +   LL GL  +G+ S
Sbjct: 366 SKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTS 425

Query: 413 DVRRFAEEMLNR--------RILIYEVTMHKLKK 438
           +    A E+LN+          + Y V MH  ++
Sbjct: 426 E----AWELLNKSEEEWWTPSDITYSVVMHGFRR 455



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/393 (20%), Positives = 149/393 (37%), Gaps = 75/393 (19%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N+ V+VL   GR ++       M+  GV   + T+  +    CGA +  +A+    VM  
Sbjct: 201 NMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQ 260

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--PDGDSFAILLEGWEKEGNV 233
           +G   D ++  +++S +C+ E +       L R++      PD  ++ +L+ G  K G+ 
Sbjct: 261 NGCPPDKISYYTVMSFLCK-EKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHA 319

Query: 234 EEA--------NKTF-----------------GEMVERFEWNPE--------HVLAYETF 260
           +EA         K F                 G M E  E   E         V+ Y T 
Sbjct: 320 DEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTV 379

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD------- 313
           +    R  ++D+A K ++ M   +C P     +  L+ L K+  ++ A +L +       
Sbjct: 380 VDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWW 439

Query: 314 ---------------------------IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
                                      + M+  G FP ++  N++   L K+++  E + 
Sbjct: 440 TPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKD 499

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
           F  +          +N  T I       + E A+ + + +  +   P   +   ++  L 
Sbjct: 500 FMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALG 559

Query: 407 NLGRLSDVRRFAEEMLNRRIL----IYEVTMHK 435
             GRL +     E+MLNR +L     Y   +H+
Sbjct: 560 KKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHR 592



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 81/185 (43%), Gaps = 2/185 (1%)

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           +   +++  R  ++  A++ L +M+ + C P +   + A+++LV       A++  + M 
Sbjct: 165 FAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMR 224

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
              G  PD  TYN + + L   +RV +  +    M++N   P  ++  T ++ L      
Sbjct: 225 RV-GVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRV 283

Query: 377 EIAIEIWNYILEN-GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 435
           E    +   +  + G+ P + + N L+ GL   G   +   F  E   +R  + EV    
Sbjct: 284 EEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSA 343

Query: 436 LKKAF 440
           +  +F
Sbjct: 344 IVHSF 348


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 131/279 (46%), Gaps = 6/279 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF +     C  G  D+A++  + M  +G    +V  N+L++  C Q  +   ALE  N 
Sbjct: 384 TFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQ-GRVDSALELFNS 442

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +    +P+  ++  LL G      ++ A +   EM++     P +V+ +   +    +  
Sbjct: 443 LP--CEPNTITYTTLLTGLCHAERLDAAAELLAEMMQ--NDCPLNVVTFNVLVSFFCQKG 498

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            V+EA++ ++ M    C P L  F+  LD + +  +S  A++L    +V  G   D++TY
Sbjct: 499 FVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLH-GLVSKGISLDTITY 557

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           + I + L +  R+ E  + FH +     +P  +     ++ L    E + AI+ + +++ 
Sbjct: 558 SSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVS 617

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           N  +P E++   L+ GL   G L + R    E+ +R +L
Sbjct: 618 NSCMPNESTYVILIEGLAREGLLKEARYVLSELCSRGVL 656



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 119/261 (45%), Gaps = 14/261 (5%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +   +C  G  + A+   D MS HG   +    N ++++IC+Q  +   A EFLN 
Sbjct: 279 TFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQ-GRVDDAFEFLNN 337

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +      PD  S+  +L+G  + G  E+A +   EMV +    P + + + TF+  L + 
Sbjct: 338 MGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRK--NCPPNEVTFNTFICILCQK 395

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
             +D+A+  +  M    C   +  ++  ++          A++L++ +       P+++T
Sbjct: 396 GLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSL----PCEPNTIT 451

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT---AITMLLDADEPEIAIEIWN 384
           Y  +   L   +R+    +   EM++N+    PLN  T    ++        E AIE+  
Sbjct: 452 YTTLLTGLCHAERLDAAAELLAEMMQNDC---PLNVVTFNVLVSFFCQKGFVEEAIELVQ 508

Query: 385 YILENGILPLEASANELLVGL 405
            ++E+G  P   + N LL G+
Sbjct: 509 QMMEHGCTPNLITFNTLLDGI 529



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 112/264 (42%), Gaps = 6/264 (2%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
           C  G+  +A          G   DV A N+L++  CR   +   A   +  +   V PD 
Sbjct: 81  CRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRY-GRLDAARRLIASMP--VPPDA 137

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++  L+ G    G V +A     +M+ R E  P  V+ Y   L  + +     +A+K L
Sbjct: 138 YTYTPLIRGLCDRGRVGDALSLLDDMLRR-ECQPS-VVTYTVLLEAVCKSSGFGQAMKVL 195

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M+ + C P +  ++  ++ + + +    A Q+ + +  + G  PD+++Y  + + L  
Sbjct: 196 DEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSY-GFQPDTVSYTTVLKGLCA 254

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
            KR  +VE  F EM++N   P  +     +         E AIE+ + + E+G       
Sbjct: 255 AKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTL 314

Query: 398 ANELLVGLRNLGRLSDVRRFAEEM 421
            N ++  +   GR+ D   F   M
Sbjct: 315 CNIVINSICKQGRVDDAFEFLNNM 338



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/347 (20%), Positives = 136/347 (39%), Gaps = 28/347 (8%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S   + ++++ + K+  F Q    +  M+  G   ++ T+  I +  C   + D+A    
Sbjct: 171 SVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQIL 230

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           + +S +G + D V+  ++L  +C  +      + F   V+    P+  +F +L+  + + 
Sbjct: 231 NRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRG 290

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI-----RGKQVDEALKFLRVMKGENC 285
           G VE A       +E  +   EH     T L  ++     +  +VD+A +FL  M    C
Sbjct: 291 GMVERA-------IEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGC 343

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    ++  L  L +      A +L +  MV     P+ +T+N     L +   + +  
Sbjct: 344 SPDTISYTTVLKGLCRAGRWEDAKELLN-EMVRKNCPPNEVTFNTFICILCQKGLIDQAI 402

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA---NELL 402
               +M +       +     +         + A+E++N       LP E +      LL
Sbjct: 403 LLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNS------LPCEPNTITYTTLL 456

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL-----KKAFYNES 444
            GL +  RL        EM+     +  VT + L     +K F  E+
Sbjct: 457 TGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEA 503



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 4/151 (2%)

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           +M+ D  L++ TF  +   +C  G  +EA+     M  HG   +++  N+LL  I  ++ 
Sbjct: 475 MMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGI-TEDC 533

Query: 198 QTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
            +  ALE L+  V K +  D  +++ +++   +E  +EEA + F   V+     P+ V+ 
Sbjct: 534 NSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMF-HAVQDMGMRPKAVM- 591

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFP 287
           Y   L  L +  + D A+ F   M   +C P
Sbjct: 592 YNKILSALCKRCETDRAIDFFAHMVSNSCMP 622


>gi|255660942|gb|ACU25640.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 484

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  + +S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSIDHELVYNVLHSAKNS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY  AG   E+V  F  M   GVE+ + + ++L   
Sbjct: 65  RCILLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E  P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMKSR-EIMP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM++    PT
Sbjct: 243 VEEMKGF-GMKPNAITYSTLLPGLCNAEKMSEARSILKEMVEKYIAPT 289



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 11/226 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K G V+E+ K F +M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVER------TIKSYDAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMMWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D  + A+
Sbjct: 181 IMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            +   +   G+ P   + + LL GL N  ++S+ R   +EM+ + I
Sbjct: 241 RLVEEMKGFGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVEKYI 286



 Score = 44.7 bits (104), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 59/291 (20%), Positives = 116/291 (39%), Gaps = 37/291 (12%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N MV+   +  + E+       MK   +  ++ T+ ++   Y    + D+A+   + M 
Sbjct: 188 YNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMK 247

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP-DGDSFAILLEGWEKEGNV 233
             G++ + +  ++LL  +C  E  +         V+K + P D   F  L+ G  K G++
Sbjct: 248 GFGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVEKYIAPTDNSIFMRLISGQCKAGDL 307

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL-RVMKGENCFPTLKFF 292
           + A      M+ R    P     Y   +    +  + D+A+K L +V++           
Sbjct: 308 DAAANVLKAMI-RLSV-PTEAGHYGVLIENYCKAGEYDKAIKLLDKVIEK---------- 355

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
               DI+++   + H                +S  YN + E L  N +  + E    +++
Sbjct: 356 ----DIILRPQSTLHM---------------ESSAYNPLIEYLCNNGQTAKAEALVRQLM 396

Query: 353 KNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           K   Q PT LN  T I        P+ A E+   +L   +   ++S + L+
Sbjct: 397 KLGVQDPTALN--TLIRGHSQEGSPDSAFELLKIMLRRKVDSEQSSYDSLV 445


>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 726

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 172/394 (43%), Gaps = 34/394 (8%)

Query: 65  SDDIESALACTGIIPTPDLVHEVLQL-SYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVD 121
           S  +E+ L     + +P  V  VL+  +      A +FFRWA R  R   +P  ++ M+ 
Sbjct: 76  SPKLEAQLRHLLRVLSPPQVRAVLRAQARGDVRRAFEFFRWADRQWRYRHAPEVFDEMLS 135

Query: 122 VLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
           +L      +     VR+M   GV      FA +  SY  AGK   A+    +M   G   
Sbjct: 136 LLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAP 195

Query: 181 DV----VAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
           D+    +AVN L+ A      +  +ALEF  R++++ V+PD  ++  L++G      V +
Sbjct: 196 DISICNMAVNVLVVA-----GRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVD 250

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSN 294
           A +  G M++     P   ++Y T +  L + K+V+E    L+ M+ +   FP    ++ 
Sbjct: 251 AMEMIGVMLQ--NGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNV 308

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGA--FPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
            +  L K     HA +  + +    G     D + Y+ I      N R+ E ++   EMI
Sbjct: 309 LIHGLAK---HGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMI 365

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
               QP  +  +T +       E + A ++  ++ +N   P   +   LL GL  +G+ S
Sbjct: 366 SKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTS 425

Query: 413 DVRRFAEEMLNR--------RILIYEVTMHKLKK 438
           +    A E+LN+          + Y V MH  ++
Sbjct: 426 E----AWELLNKSEEEWWTPSDITYSVVMHGFRR 455



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/393 (20%), Positives = 149/393 (37%), Gaps = 75/393 (19%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N+ V+VL   GR ++       M+  GV   + T+  +    CGA +  +A+    VM  
Sbjct: 201 NMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQ 260

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--PDGDSFAILLEGWEKEGNV 233
           +G   D ++  +++S +C+ E +       L R++      PD  ++ +L+ G  K G+ 
Sbjct: 261 NGCPPDKISYYTVMSFLCK-EKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHA 319

Query: 234 EEA--------NKTF-----------------GEMVERFEWNPE--------HVLAYETF 260
           +EA         K F                 G M E  E   E         V+ Y T 
Sbjct: 320 DEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTV 379

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD------- 313
           +    R  ++D+A K ++ M   +C P     +  L+ L K+  ++ A +L +       
Sbjct: 380 VDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWW 439

Query: 314 ---------------------------IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
                                      + M+  G FP ++  N++   L K+++  E + 
Sbjct: 440 TPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKD 499

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
           F  +          +N  T I       + E A+ + + +  +   P   +   ++  L 
Sbjct: 500 FMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALG 559

Query: 407 NLGRLSDVRRFAEEMLNRRIL----IYEVTMHK 435
             GRL +     E+MLNR +L     Y   +H+
Sbjct: 560 KKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHR 592



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 81/185 (43%), Gaps = 2/185 (1%)

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           +   +++  R  ++  A++ L +M+ + C P +   + A+++LV       A++  + M 
Sbjct: 165 FAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMR 224

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
              G  PD  TYN + + L   +RV +  +    M++N   P  ++  T ++ L      
Sbjct: 225 RV-GVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRV 283

Query: 377 EIAIEIWNYILEN-GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 435
           E    +   +  + G+ P + + N L+ GL   G   +   F  E   +R  + EV    
Sbjct: 284 EEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSA 343

Query: 436 LKKAF 440
           +  +F
Sbjct: 344 IVHSF 348


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 131/308 (42%), Gaps = 7/308 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ ++D L K GR   + +AV + +E     +  T+ S+   YC AG  DEA+     M 
Sbjct: 258 YSTVIDGLCKAGR---LRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMV 314

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
                 DV+   +L+SA C+          F   V   + PD  +F  L++G   EG +E
Sbjct: 315 DDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRME 374

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A +   E+  R    P  +  Y   +    +  QV +A + +   +     P    ++ 
Sbjct: 375 DALELLEEITRR--GCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNI 432

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT-YNMIFECLIKNKRVHEVEKFFHEMIK 353
            +    +   +  A+Q  D +    G  P S+  Y +I + L ++ R  +  +F+ EMI+
Sbjct: 433 LVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQ 492

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
             + P     AT +  L  A +P+ A E+   +++ G  P   + + ++      G +  
Sbjct: 493 RGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQK 552

Query: 414 VRRFAEEM 421
               A E+
Sbjct: 553 ADELASEL 560



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 129/320 (40%), Gaps = 13/320 (4%)

Query: 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           M E G ++  T+ ++    C A   DEA+     M   G+    +  N ++  +CR   +
Sbjct: 72  MAELGAVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRA-GR 130

Query: 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
              AL    ++     PD  ++  L+ G  K G + +A +   EMV     +  HV    
Sbjct: 131 LRHALGVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMV-----SARHVPDNT 185

Query: 259 TFLI---TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           T  +   +L  G +VD+A + +  M           +S  +D L K      AV L    
Sbjct: 186 TLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGE 245

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           +   G  PD +TY+ + + L K  R+ +    F EM      PT +   + I     A +
Sbjct: 246 VTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGD 302

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 435
            + AI +   ++++   P   +   L+     +GRL D     ++M+  ++    VT   
Sbjct: 303 MDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTS 362

Query: 436 LKKAFYNESRSMRDIFDSLE 455
           L      E R M D  + LE
Sbjct: 363 LVDGLCGEGR-MEDALELLE 381



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 128/319 (40%), Gaps = 15/319 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RG        N+++  L + GR        R M +       T+  +      AG+  +A
Sbjct: 109 RGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDA 168

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAIC---RQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           V     M       D   +  ++ ++C   R ++      E L+R    +  +  +++ L
Sbjct: 169 VQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRG---MAANAITYSAL 225

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G  K   ++EA       V R  + P+ ++ Y T +  L +  ++ +A+     M   
Sbjct: 226 VDGLCKCERLDEAVALLLGEVTRRGFTPD-IVTYSTVIDGLCKAGRLRDAVDIFEEM--- 281

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
           +C PT   +++ +    +  D   A++L    MV     PD +TY  +     K  R+ +
Sbjct: 282 SCAPTAITYNSLIGGYCRAGDMDEAIRLLG-KMVDDNCAPDVITYTTLMSAFCKMGRLDD 340

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
             + F +M+ N+  P  +   + +  L      E A+E+   I   G  P   + N ++ 
Sbjct: 341 AYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVD 400

Query: 404 GLRNLGRLSDVRRFAEEML 422
           G       S+  R AEE++
Sbjct: 401 GYCK----SNQVRKAEELV 415


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 122/247 (49%), Gaps = 9/247 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++D L  +G+  +  + ++ M+  G   S  T+ +I D  C   + +EA   FD M 
Sbjct: 444 YNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMD 503

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
           + G+ ++ +  N+L+  +C  E +   A E +++ + + + P+  ++  +L  + K+GN+
Sbjct: 504 VTGIGRNAITFNTLIDGLCNAE-RIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNI 562

Query: 234 EEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +A      M    FE +   V+ Y T +  L + ++   ALK LR M+ +   PT K +
Sbjct: 563 SKAADILQTMTANGFEVD---VVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAY 619

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR-VHEVEKFFHEM 351
           +  +  L + N+   A+ L+  M    G  PD+ TY ++F  L +    + E   F  EM
Sbjct: 620 NPVIQSLFRGNNGRDALSLFREMTEVGGP-PDAFTYKIVFRGLCRGGGPIKEAFDFLVEM 678

Query: 352 IKNEWQP 358
             N + P
Sbjct: 679 ADNGFIP 685



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 146/334 (43%), Gaps = 13/334 (3%)

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           ++D  S+ +D F     G + +   +N ++ VL +  + + + +A   M   G+   + T
Sbjct: 144 AFDLVSNQLDMF-----GVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVT 198

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F ++ D+ C A +   AV+  + MS   V  D     +L+     +E     AL    R+
Sbjct: 199 FNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFV-EEGSIEAALRLKARM 257

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEA-NKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            ++   P   +  +L+ G+ K G V +A      E+ + FE  P+ V  + TF+  L + 
Sbjct: 258 SEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFE--PDRV-TFSTFVNGLCQN 314

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
             VD ALK L +M  E C P +  +S  ++ L    +   A  + +  MV  G  PD+ T
Sbjct: 315 GHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVN-QMVDSGCLPDTTT 373

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           +N +   L    ++ E      E+      P        I  L    +P +A+ ++  + 
Sbjct: 374 FNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMK 433

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            +G  P E + N L+  L + G+L+      +EM
Sbjct: 434 SSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEM 467



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 130/289 (44%), Gaps = 5/289 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           T   + + YC  G+  +A+         G E D V  ++ ++ +C Q      AL+ L  
Sbjct: 268 TVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLC-QNGHVDHALKVLGL 326

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +++  +PD  +++ ++      G +EEA     +MV+     P+    + T ++ L   
Sbjct: 327 MLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDS-GCLPDTT-TFNTLIVALCTE 384

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            Q++EAL   R +  +   P +  F+  ++ L K+ D   AV+L++ M    G  PD +T
Sbjct: 385 NQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKS-SGCTPDEVT 443

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN++ + L  + ++ +      EM  +    + +   T I  L      E A E+++ + 
Sbjct: 444 YNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMD 503

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
             GI     + N L+ GL N  R+ D     ++M++  +    VT + +
Sbjct: 504 VTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSI 552


>gi|225440005|ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230
           [Vitis vinifera]
          Length = 763

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 162/358 (45%), Gaps = 26/358 (7%)

Query: 19  SSSSTTTSPTSHNPHRP-----------TRPRFP-THLDAPYISSSARIICEILAH-ASS 65
           +SS    +P S +P  P             PR P   L  P       IIC ++A+ A +
Sbjct: 46  TSSPIPETPVSGSPSEPGNLTAAEAGEKASPRTPRGKLRNP--EKIEDIICRMMANRAWT 103

Query: 66  DDIESALACTGIIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWNLMVD 121
             +++++    ++P  D  LV  VL  S +S   A+ FFRW  R    R        +++
Sbjct: 104 TRLQNSI--RSLVPQFDHSLVWNVLHGSRNS-DHALQFFRWVERAGLFRHDRDTHLKIIE 160

Query: 122 VLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
           +LG+  +       +  M + GV      F  + DSY  AG   E+V  F  M   GVE+
Sbjct: 161 ILGRASKLNHARCILLDMPKKGVEWDEDLFVLLIDSYGKAGIVQESVKVFQKMKELGVER 220

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
            + + ++L   I R+         F   + + V P   ++ I++ G+     VE AN+ F
Sbjct: 221 TIKSYDALFKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIWGFFLSLKVETANRFF 280

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            EM ER   +P+ V+ Y T +    R K+++EA KF   MKG N  PT+  ++  +   V
Sbjct: 281 EEMKER-RISPD-VVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYV 338

Query: 301 KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
            +      ++L++ M  F G  P+++TY+ +   L   +++ E +    EM++    P
Sbjct: 339 SVGRVDDGLRLFEEMKSF-GIKPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERYIAP 395



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 13/227 (5%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK V+ D D F +L++ + K G V+E+ K F +M    VER       + +Y+  
Sbjct: 175 LLDMPKKGVEWDEDLFVLLIDSYGKAGIVQESVKVFQKMKELGVER------TIKSYDAL 228

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL-DILVKLNDSTHAVQLWDIMMVFH 319
              ++R  +   A ++   M  E   PT   ++  +    + L   T A + ++ M    
Sbjct: 229 FKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIWGFFLSLKVET-ANRFFEEMKERR 287

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
            + PD +TYN +     + K++ E EKFF EM     +PT ++  T I   +     +  
Sbjct: 288 IS-PDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDG 346

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           + ++  +   GI P   + + LL GL +  ++ + +   +EM+ R I
Sbjct: 347 LRLFEEMKSFGIKPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERYI 393



 Score = 41.2 bits (95), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 39/199 (19%), Positives = 82/199 (41%), Gaps = 5/199 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            +NL+++ L  +G+  +     R + + GV     F ++   +   G  + A     +M 
Sbjct: 478 GYNLIIEYLCNSGQTSKAETLFRQLMKKGVQDPIAFNNLIRGHSKEGAPESAFEILKIMG 537

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
              V ++  A   L+ +  ++             ++    PD   F  ++E   ++G ++
Sbjct: 538 RREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGHIPDSSLFRSVMESLFEDGRIQ 597

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A++    MVE+       ++A +     L+RG  V+EAL  + ++    C P    F  
Sbjct: 598 TASRVMNNMVEKGVKENMDLVA-KILEALLLRG-HVEEALGRIDLLMNNGCEPD---FDG 652

Query: 295 ALDILVKLNDSTHAVQLWD 313
            L +L     +  A++L D
Sbjct: 653 LLSVLCAKGKTIAALKLLD 671


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 150/367 (40%), Gaps = 49/367 (13%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAV--- 167
            P  +  ++  LG  G  + M   V  M+ +G  + L    S  DSY G   +D+AV   
Sbjct: 73  GPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAVDLI 132

Query: 168 ----------------------------------MSFDVMSMHGVEQDVVAVNSLLSAIC 193
                                               +  M   G++ DVV  N+L+ A+C
Sbjct: 133 LNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALC 192

Query: 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           R     +  +       + V PD  +F  L++G+ +EG++E A +    M+E        
Sbjct: 193 RAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEM------G 246

Query: 254 VLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
             A +  +  LI G     +V++AL +++    +   P    ++  ++ L + +   HA+
Sbjct: 247 CSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHAL 306

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           ++ D+M V  G  PD  TYN++  CL KN ++ E +   ++M+     P      T I  
Sbjct: 307 KVMDVM-VQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAA 365

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
           L   +  E A+++   +   G+ P   + N L+  L  +G      R  EEM N      
Sbjct: 366 LCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD 425

Query: 430 EVTMHKL 436
           EVT + L
Sbjct: 426 EVTYNTL 432



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 122/247 (49%), Gaps = 9/247 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D L   G+  +  + ++ M+  G   S  T+ +I D  C   + +EA   FD M 
Sbjct: 429 YNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMD 488

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
           + G+ ++ +  N+L+  +C+ + +   A E +N+ + + + P+  ++  +L  + K+G++
Sbjct: 489 LQGISRNAITFNTLIDGLCK-DKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDI 547

Query: 234 EEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++A      M    FE +   V+ Y T +  L +  +   ALK LR M+ +   PT K +
Sbjct: 548 KKAADILETMTANGFEVD---VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAY 604

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR-VHEVEKFFHEM 351
           +  L  L + N+   A+ L+  M    G  PD+LTY ++F  L +    + E   F  EM
Sbjct: 605 NPVLQSLFRRNNIRDALSLFREMAEV-GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEM 663

Query: 352 IKNEWQP 358
           +   + P
Sbjct: 664 VDKGFIP 670



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 134/297 (45%), Gaps = 6/297 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  V+ L +N         + VM ++G    + T+  + +  C  G+ +EA    + M 
Sbjct: 289 YNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMV 348

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D+   N+L++A+C   N+   AL+   +V  K V PD  +F IL+    K G+ 
Sbjct: 349 DRGCLPDITTFNTLIAALC-TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDP 407

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A + F EM +     P+ V  Y T +  L    ++ +AL  L+ M+   C  +   ++
Sbjct: 408 HLALRLFEEM-KNSGCTPDEV-TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYN 465

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D L K      A +++D  M   G   +++T+N + + L K+K++ +  +  ++MI 
Sbjct: 466 TIIDGLCKKMRIEEAEEVFD-QMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMIS 524

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
              QP  +   + +T      + + A +I   +  NG      +   L+ GL   GR
Sbjct: 525 EGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGR 581



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 139/309 (44%), Gaps = 7/309 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           T   + + YC  G+ ++A+         G E D +  N+ ++ +C Q +    AL+ ++ 
Sbjct: 253 TVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLC-QNDHVGHALKVMDV 311

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V++  DPD  ++ I++    K G +EEA     +MV+R    P+ +  + T +  L  G
Sbjct: 312 MVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDR-GCLPD-ITTFNTLIAALCTG 369

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +++EAL   R +  +   P +  F+  ++ L K+ D   A++L++  M   G  PD +T
Sbjct: 370 NRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE-EMKNSGCTPDEVT 428

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN + + L    ++ +      +M       + +   T I  L      E A E+++ + 
Sbjct: 429 YNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMD 488

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES--R 445
             GI     + N L+ GL    ++ D      +M++  +    +T + +   +  +   +
Sbjct: 489 LQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIK 548

Query: 446 SMRDIFDSL 454
              DI +++
Sbjct: 549 KAADILETM 557



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 144/348 (41%), Gaps = 40/348 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N++V+ L KNG+ E+    +  M + G L  + TF ++  + C   + +EA+     
Sbjct: 322 FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQ 381

Query: 173 MSMHGVEQDVVAVNSLLSAICR-----------QENQTS--------------------- 200
           +++ GV  DV   N L++A+C+           +E + S                     
Sbjct: 382 VTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK 441

Query: 201 --RALEFLNRVKKIVDPDGD-SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             +AL+ L  ++    P    ++  +++G  K+  +EEA + F +M    +    + + +
Sbjct: 442 LGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM--DLQGISRNAITF 499

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
            T +  L + K++D+A + +  M  E   P    +++ L    K  D   A  + + M  
Sbjct: 500 NTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTA 559

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
            +G   D +TY  +   L K  R     K    M     +PTP      +  L   +   
Sbjct: 560 -NGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIR 618

Query: 378 IAIEIWNYILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNR 424
            A+ ++  + E G  P   +   +  GL R  G + +   F  EM+++
Sbjct: 619 DALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDK 666


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 120/278 (43%), Gaps = 5/278 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           TF  + D  C  G   EA   F+ M+  G E +    N+L+   C   NQ   A + L+ 
Sbjct: 304 TFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLN-NQMDEAQKVLDI 362

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V K   P   S+ IL+ G+ K   ++EA     EM E+ E  P+ V  Y T +  L + 
Sbjct: 363 MVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEK-ELTPDTV-TYSTLMQGLCQV 420

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +  EAL   + M      P L  +S  LD L K      A++L   M       PD + 
Sbjct: 421 GRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQE-SKIEPDIVL 479

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN++ E +    ++   ++ F ++  +  QPT       I  LL     + A E++  + 
Sbjct: 480 YNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKME 539

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
           ++G LP   S N ++ G       S   R  +EM+ +R
Sbjct: 540 DDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKR 577



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 149/352 (42%), Gaps = 45/352 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMS 169
           Y+ N++++ L    R   +  A+ V+ +   L +     TF ++ +  C  G+  EAV  
Sbjct: 128 YSLNILINCLC---RLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGL 184

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWE 228
           F+ M   G + DV++ +++++ +C+  N TS AL+ L ++ +K   P+  ++  +++   
Sbjct: 185 FNEMVRRGHQPDVISYSTVINGLCKSGN-TSMALQLLRKMEEKGCKPNLVAYTTIIDSLC 243

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K+  V +A     EMV+R    P  V+ Y T L        ++EA      M G N  P 
Sbjct: 244 KDTLVNDAMDLLSEMVDR--GIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPN 301

Query: 289 LKFFSNALDILVK----------------------------------LNDSTHAVQLWDI 314
              F+  +D L K                                  LN+     Q    
Sbjct: 302 TVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLD 361

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
           +MV  G  P   +YN++     K +R+ E +    EM + E  P  +  +T +  L    
Sbjct: 362 IMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVG 421

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            P+ A+ ++  +  +G+LP   + + LL GL   G L +  +  + M   +I
Sbjct: 422 RPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKI 473



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 118/274 (43%), Gaps = 13/274 (4%)

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEE 235
           G++ D +  N+L++  C  E +   A+   N  V++   PD  S++ ++ G  K GN   
Sbjct: 157 GIQPDAITFNTLINGRCI-EGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSM 215

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A +   +M E+      +++AY T + +L +   V++A+  L  M      P +  +S  
Sbjct: 216 ALQLLRKMEEK--GCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTI 273

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           L     L     A  L++  MV     P+++T+ ++ + L K   V E    F  M K  
Sbjct: 274 LHGFCSLGHLNEATILFN-EMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKG 332

Query: 356 WQPTPLNCATAITMLLDA----DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
            +P     A     L+D     ++ + A ++ + +++ G  P+  S N L+ G     RL
Sbjct: 333 AEPN----AYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRL 388

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            + +    EM  + +    VT   L +      R
Sbjct: 389 DEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGR 422



 Score = 45.8 bits (107), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 87/208 (41%), Gaps = 9/208 (4%)

Query: 232 NVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           ++++A  +F  M+     NP   V+ +  FL ++ + KQ    +     M        + 
Sbjct: 72  SIDDALASFYRMLR---MNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVY 128

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
             +  ++ L +LN    A+ +   M    G  PD++T+N +         + E    F+E
Sbjct: 129 SLNILINCLCRLNHVVFAISVLGKMFKL-GIQPDAITFNTLINGRCIEGEIKEAVGLFNE 187

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M++   QP  ++ +T I  L  +    +A+++   + E G  P   +   ++  L     
Sbjct: 188 MVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTL 247

Query: 411 LSDVRRFAEEMLNRRI----LIYEVTMH 434
           ++D      EM++R I    + Y   +H
Sbjct: 248 VNDAMDLLSEMVDRGIPPDVVTYSTILH 275



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 3/152 (1%)

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
           AV L++  MV  G  PD ++Y+ +   L K+       +   +M +   +P  +   T I
Sbjct: 181 AVGLFN-EMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTII 239

Query: 368 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
             L        A+++ + +++ GI P   + + +L G  +LG L++      EM+ R ++
Sbjct: 240 DSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVM 299

Query: 428 IYEVTMHKLKKAFYNES--RSMRDIFDSLERR 457
              VT   L      E      R +F+++ ++
Sbjct: 300 PNTVTFTILVDGLCKEGMVSEARCVFEAMTKK 331


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 136/290 (46%), Gaps = 4/290 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           R   RG + +   + ++V+ L K G  +  +N +  M+   +   +  F +I DS C   
Sbjct: 139 RMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYR 198

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D+A+  F  M   G+  +VV  +SL+S +C     +  +    + ++K ++P+  +F 
Sbjct: 199 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFN 258

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++ + KEG   EA K   +M++R   +P+ +  Y + +       ++D+A +    M 
Sbjct: 259 ALIDAFVKEGKFVEAEKLHDDMIKR-SIDPD-IFTYNSLINGFCMHDRLDKAKQMFEFMV 316

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            ++CFP L  ++  +    K        +L+   M   G   D++TY  + + L  +   
Sbjct: 317 SKDCFPDLDTYNTLIKGFCKSKRVEDGTELFR-EMSHRGLVGDTVTYTTLIQGLFHDGDC 375

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
              +K F +M+ +   P  +  +  +  L +  + E A+E+++Y+ ++ I
Sbjct: 376 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 425



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 152/338 (44%), Gaps = 10/338 (2%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAV---RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           S + +N ++  + K  +F+ + +     ++MK     S+ T +S+ + YC   +  +AV 
Sbjct: 41  SIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVA 100

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGW 227
             D M   G   D +   +L+  +    N+ S A+  ++R V++   P+  ++ +++ G 
Sbjct: 101 LVDQMVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 159

Query: 228 EKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
            K G+++ A     +M   + E +   V+ + T + +L + + VD+AL   + M+ +   
Sbjct: 160 CKRGDIDLAFNLLNKMEAAKIEAD---VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIR 216

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P +  +S+ +  L      + A QL   M +     P+ +T+N + +  +K  +  E EK
Sbjct: 217 PNVVTYSSLISCLCSYGRWSDASQLLSDM-IEKKINPNLVTFNALIDAFVKEGKFVEAEK 275

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
              +MIK    P      + I      D  + A +++ +++     P   + N L+ G  
Sbjct: 276 LHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFC 335

Query: 407 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
              R+ D      EM +R ++   VT   L +  +++ 
Sbjct: 336 KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 373



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 132/315 (41%), Gaps = 9/315 (2%)

Query: 92  YDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           Y     A++ F+    +G R +   ++ ++  L   GR+      +  M E  +  +L T
Sbjct: 197 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 256

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLN 207
           F ++ D++   GK+ EA    D M    ++ D+   NSL++  C  +  ++  +  EF+ 
Sbjct: 257 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM- 315

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V K   PD D++  L++G+ K   VE+  + F EM  R        + Y T +  L   
Sbjct: 316 -VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG--DTVTYTTLIQGLFHD 372

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
              D A K  + M  +   P +  +S  LD L        A++++D M        D   
Sbjct: 373 GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL-DIYI 431

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y  + E + K  +V +    F  +     +P  +   T I+ L      + A  +   + 
Sbjct: 432 YTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 491

Query: 388 ENGILPLEASANELL 402
           E+G LP   + N L+
Sbjct: 492 EDGPLPDSGTYNTLI 506


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 143/343 (41%), Gaps = 3/343 (0%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   +G   S  A+N ++  LGK  R E+       MK D V ++PT+  + D  C  GK
Sbjct: 360 RQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGK 419

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A+   D M   G+  +V+ VN ++  +C+ +        F     K+  P+  +F+ 
Sbjct: 420 LNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSS 479

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  K G V++A   + +M++    +    + Y + + +  +  + ++  K  + M  
Sbjct: 480 LIDGLGKCGRVDDAYSLYEKMLDC--GHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVH 537

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
             C P L   +  +D + K  ++     L+  +   HG  PD+ +Y+++   L+K    +
Sbjct: 538 TGCSPDLTLINTYMDCVFKAGETEKGRALFREINA-HGFIPDARSYSILIHGLVKAGLAN 596

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E  + F+ M +             I     + +   A ++   +   G  P   +   ++
Sbjct: 597 ETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVI 656

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            GL  + RL +     EE  +  I +  V    L   F    R
Sbjct: 657 DGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGR 699



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 146/322 (45%), Gaps = 15/322 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G  ++ + +  ++ V  + GR +   + +  MK + +   +  +    D +  AGK D +
Sbjct: 225 GYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMS 284

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV---KKIVDPDGDSFAIL 223
              F  M  HG+  D V   S++  +C+  N+   A+E   ++   +K+  P   ++  +
Sbjct: 285 WKFFHEMKSHGLMPDDVTYTSMIGVLCKA-NRLDEAVELFEQLEQNRKV--PCAYAYNTM 341

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMK 281
           + G+   G  +EA   +G ++ER +       V+AY   L  L + ++V+EAL+    MK
Sbjct: 342 IMGYGSAGKFDEA---YG-LLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMK 397

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
             +  P +  ++  +D+L +      A+++ D M    G FP+ LT N++ + L K +++
Sbjct: 398 -RDAVPNVPTYNILIDMLCREGKLNAALEIRDDMER-AGLFPNVLTVNIMIDRLCKAQKL 455

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E    F  M      P  +  ++ I  L      + A  ++  +L+ G +P       L
Sbjct: 456 EEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSL 515

Query: 402 LVGLRNLGRLSDVRRFAEEMLN 423
           +      GR  D  +  +EM++
Sbjct: 516 IRSFFKCGRKEDGHKIYKEMVH 537



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 108/251 (43%), Gaps = 4/251 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCG 159
           F+    +G  L  +A+N ++D   K+G+  + +  +  MK  G   ++ T+ S+ D    
Sbjct: 602 FYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAK 661

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             + DEA M F+    +G++ +VV  +SL+    +        L     ++K + P+  +
Sbjct: 662 IDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYT 721

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  LL+   K   + EA   F  M +     P + + Y   +  L R ++ ++A  F + 
Sbjct: 722 WNCLLDALVKAEEINEALICFQSMKDL--KCPPNQITYSILINGLCRVRKFNKAFVFWQE 779

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M+     P    ++  +  L K  +   A  L+      +G  PDS +YN + E L    
Sbjct: 780 MQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKA-NGGIPDSASYNAMIEGLSSAN 838

Query: 340 RVHEVEKFFHE 350
           +  +    F E
Sbjct: 839 KAMDAYALFEE 849



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 130/329 (39%), Gaps = 39/329 (11%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D LGK GR +  ++    M + G V     + S+  S+   G+ ++    +  M   G
Sbjct: 480 LIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTG 539

Query: 178 VEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
              D+  +N+ +  + +  E +  RAL F         PD  S++IL+ G  K G   E 
Sbjct: 540 CSPDLTLINTYMDCVFKAGETEKGRAL-FREINAHGFIPDARSYSILIHGLVKAGLANET 598

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            + F  M E+      H  AY   +    +  +V++A + L  MK +   PT+  + + +
Sbjct: 599 YELFYAMKEQGCVLDTH--AYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVI 656

Query: 297 DILVKLNDSTHAVQLWD--------------------------------IM--MVFHGAF 322
           D L K++    A  L++                                IM  ++  G  
Sbjct: 657 DGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 716

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           P+  T+N + + L+K + ++E    F  M   +  P  +  +  I  L    +   A   
Sbjct: 717 PNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVF 776

Query: 383 WNYILENGILPLEASANELLVGLRNLGRL 411
           W  + + G+ P   +   ++ GL   G +
Sbjct: 777 WQEMQKLGLKPNTITYTTMISGLAKAGNI 805



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 148/369 (40%), Gaps = 80/369 (21%)

Query: 56  ICEILAHAS-SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--S 112
           +C IL        +E++L+  G  P P+LV  VL+   D+ ++AV++F+WA +       
Sbjct: 66  VCCILESGPWGPTLENSLSALGEKPLPELVIGVLKRLKDA-NTAVNYFQWAEKQTEKVHC 124

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           P A+N ++ V+ +N  F+ +    R+++E   +SL  F    +                 
Sbjct: 125 PEAYNSLLMVMARNTEFDHLE---RILEE---MSLSGFGPSSN----------------- 161

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
                       ++  L A C +  +   A + +  ++K    P   ++ IL+    +  
Sbjct: 162 ------------ISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVR 209

Query: 232 NVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             +     F +M E  +E N   V  + T +    R  +VD AL  L  MK         
Sbjct: 210 EPDPMLILFHQMQELGYEVN---VHLFTTLIRVFAREGRVDAALSLLDEMK--------- 257

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
             SN+LD                          D + YN+  +C  K  +V    KFFHE
Sbjct: 258 --SNSLD-------------------------ADIVLYNVCIDCFGKAGKVDMSWKFFHE 290

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M  +   P  +   + I +L  A+  + A+E++  + +N  +P   + N +++G  + G+
Sbjct: 291 MKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGK 350

Query: 411 LSDVRRFAE 419
             +     E
Sbjct: 351 FDEAYGLLE 359


>gi|224107981|ref|XP_002314676.1| predicted protein [Populus trichocarpa]
 gi|222863716|gb|EEF00847.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 187/439 (42%), Gaps = 62/439 (14%)

Query: 51  SSARIICEILA--HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR- 107
           S A  + EIL   + S D +  AL  +GI  T DLV ++L+   +    A+  F WA   
Sbjct: 105 SDAHKVGEILKKHYLSEDAVVEALNESGISATHDLVSQLLKRFSNQWLIALGVFIWAKNQ 164

Query: 108 -GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDE 165
            G    P  +N M+D+LGK+ +F  MW+ V+ M   +G +SL T   +       GKY+E
Sbjct: 165 TGYVHKPEIYNSMIDILGKSRKFSLMWDLVQEMSGLNGYVSLVTMGKVMKRLVRDGKYNE 224

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQ---ENQTSRALEFLNRVKKIVDPDGDSFAI 222
           A+ +F  +   G+ +   A+N L+  + R    E+  + ALEF    +  +  D  S+ I
Sbjct: 225 AIDAFRGLEKFGLSKSTEAMNVLMDILARNGRVEDARAVALEF----EGCLTLDYRSYNI 280

Query: 223 LLEGWEKEGNVEEANKTFGEMVER-FEWN------------------------------- 250
           L  G+ K     +A KT  EM ER F  N                               
Sbjct: 281 LSSGYCKARMFGDARKTMEEMEERGFHPNVVSYTAFIEAYGEQKDFRNVEIILNEMQEKG 340

Query: 251 -PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV---KLNDST 306
            P  ++ Y  ++  L + +Q+++AL+    +K        +F+ + +  L    +L D+ 
Sbjct: 341 CPPDLITYTVYIRALGKARQINKALEICEEIKRNGFVLGTQFYCSLIHSLCLSGRLKDA- 399

Query: 307 HAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
                W+I   +   G   D   Y  +        +     K  H+M ++  +P     A
Sbjct: 400 -----WNIFEDVEKQGVGRDLGMYKAMISAACALSQDESALKLLHKMEEDSCKPDVQTYA 454

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV-GLRNLGRLSDVRRFAEEMLN 423
             + M       ++   + N++ EN +  ++    +LLV GLR  G+L     F +E + 
Sbjct: 455 PLLKMCCRKKSMKMLKFLLNHMFENDV-SIDIVTYDLLVHGLRKQGKLKYACFFFQEAVL 513

Query: 424 RRIL----IYEVTMHKLKK 438
           + ++     Y++ + +L++
Sbjct: 514 KGMVPCDKTYKILLEELER 532


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 107/206 (51%), Gaps = 3/206 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ S+   +C +G+  EA+   + M  +GVE +VV  +S +  +C+    T     F + 
Sbjct: 270 TYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSM 329

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           VK+ + PD  +++ LL G+  EG + E +  F  MV+  +  P+H + + T +    +  
Sbjct: 330 VKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQS-DMQPDHYV-FNTLIYASAKQG 387

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +VDEA+     M+ +   P    +S  ++   K+    +A+ L+   MV +G  P+ +TY
Sbjct: 388 KVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQ-EMVSNGVSPNFITY 446

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKN 354
           N++ + L +  R    ++F+ ++IK+
Sbjct: 447 NIMLQGLFRTGRTATAKEFYVQIIKS 472



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 139/322 (43%), Gaps = 26/322 (8%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           ++  +++  L    R ++    + +M +DG   LP   +++++ D     G  D+A  ++
Sbjct: 162 FSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAYATY 221

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M    +  +VV  +S+++A+C+ +    +A+E  +R VK  V P+  ++  L+ G+  
Sbjct: 222 REMLDRRILPNVVIYSSIIAALCKGQ-AMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCS 280

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G + EA K   +M         +V+ Y +F+  L +  +  EA K    M      P +
Sbjct: 281 SGQLTEAIKFLEKMCS--NGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDI 338

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF---------PDSLTYNMIFECLIKNKR 340
             +S+ L          H   +   ++  HG F         PD   +N +     K  +
Sbjct: 339 TTYSSLL----------HGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGK 388

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           V E    F +M +   +P  +  +T I         E A+ ++  ++ NG+ P   + N 
Sbjct: 389 VDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYNI 448

Query: 401 LLVGLRNLGRLSDVRRFAEEML 422
           +L GL   GR +  + F  +++
Sbjct: 449 MLQGLFRTGRTATAKEFYVQII 470



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 138/308 (44%), Gaps = 14/308 (4%)

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK----IVD 214
           G+G  ++A+  FD +   G+   + ++N  L+ + R  +  + A+   NR+ +    +V 
Sbjct: 30  GSGGAEDALDVFDELLRRGIGAPIRSLNGALADVAR--DNPAAAVSRFNRMARAGASMVT 87

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEA 273
           P   ++ IL+      G ++      G +V++ F   P   + +   L  L   K+ D+A
Sbjct: 88  PTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEP---IIFNPLLKGLCADKRTDDA 144

Query: 274 LKF-LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV-FHGAFPDSLTYNMI 331
           +   LR M   +C P +   +  L  L   N S  A++L  +M     G  P+ ++Y+ +
Sbjct: 145 MDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTV 204

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
            + L+K     +    + EM+     P  +  ++ I  L      + A+E+ + +++NG+
Sbjct: 205 IDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGV 264

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RD 449
            P   +   L+ G  + G+L++  +F E+M +  +    VT            R    R 
Sbjct: 265 TPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARK 324

Query: 450 IFDSLERR 457
           IFDS+ +R
Sbjct: 325 IFDSMVKR 332



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 82/412 (19%), Positives = 174/412 (42%), Gaps = 48/412 (11%)

Query: 79  PTPDLVHEVLQLSYDSPSSAVDFF-RWAGRGQRL---SPYAWNLMVDVLGKNGRFEQMWN 134
           P   L   +  ++ D+P++AV  F R A  G  +   + + + +++      GR +  + 
Sbjct: 52  PIRSLNGALADVARDNPAAAVSRFNRMARAGASMVTPTVHTYGILIGCCCSAGRLDLGFA 111

Query: 135 AVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAI 192
           A+  + + G    P  F  +    C   + D+A+ +    M+      +V +   +L  +
Sbjct: 112 ALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKGL 171

Query: 193 CRQENQTSRALEFLNRVKKIVD---PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
           C  EN++  ALE L+ +        P+  S++ +++G  K G+ ++A  T+ EM++R   
Sbjct: 172 C-HENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRIL 230

Query: 250 NPEHVLAYETFLITLIRGKQVD-----------------------------------EAL 274
              +V+ Y + +  L +G+ +D                                   EA+
Sbjct: 231 --PNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAI 288

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           KFL  M      P +  +S+ +D L K    T A +++D  MV  G  PD  TY+ +   
Sbjct: 289 KFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFD-SMVKRGLKPDITTYSSLLHG 347

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
                 + E+   F  M++++ QP      T I       + + A+ +++ + + G+ P 
Sbjct: 348 YAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPN 407

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446
             + + L+ G   + R+ +     +EM++  +    +T + + +  +   R+
Sbjct: 408 CVTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRT 459


>gi|297741611|emb|CBI32743.3| unnamed protein product [Vitis vinifera]
          Length = 772

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 162/358 (45%), Gaps = 26/358 (7%)

Query: 19  SSSSTTTSPTSHNPHRP-----------TRPRFP-THLDAPYISSSARIICEILAH-ASS 65
           +SS    +P S +P  P             PR P   L  P       IIC ++A+ A +
Sbjct: 46  TSSPIPETPVSGSPSEPGNLTAAEAGEKASPRTPRGKLRNP--EKIEDIICRMMANRAWT 103

Query: 66  DDIESALACTGIIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWNLMVD 121
             +++++    ++P  D  LV  VL  S +S   A+ FFRW  R    R        +++
Sbjct: 104 TRLQNSI--RSLVPQFDHSLVWNVLHGSRNS-DHALQFFRWVERAGLFRHDRDTHLKIIE 160

Query: 122 VLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
           +LG+  +       +  M + GV      F  + DSY  AG   E+V  F  M   GVE+
Sbjct: 161 ILGRASKLNHARCILLDMPKKGVEWDEDLFVLLIDSYGKAGIVQESVKVFQKMKELGVER 220

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
            + + ++L   I R+         F   + + V P   ++ I++ G+     VE AN+ F
Sbjct: 221 TIKSYDALFKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIWGFFLSLKVETANRFF 280

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            EM ER   +P+ V+ Y T +    R K+++EA KF   MKG N  PT+  ++  +   V
Sbjct: 281 EEMKER-RISPD-VVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYV 338

Query: 301 KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
            +      ++L++ M  F G  P+++TY+ +   L   +++ E +    EM++    P
Sbjct: 339 SVGRVDDGLRLFEEMKSF-GIKPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERYIAP 395



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 13/227 (5%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK V+ D D F +L++ + K G V+E+ K F +M    VER       + +Y+  
Sbjct: 175 LLDMPKKGVEWDEDLFVLLIDSYGKAGIVQESVKVFQKMKELGVER------TIKSYDAL 228

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL-DILVKLNDSTHAVQLWDIMMVFH 319
              ++R  +   A ++   M  E   PT   ++  +    + L   T A + ++ M    
Sbjct: 229 FKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIWGFFLSLKVET-ANRFFEEMKERR 287

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
            + PD +TYN +     + K++ E EKFF EM     +PT ++  T I   +     +  
Sbjct: 288 IS-PDVVTYNTMINGYYRIKKMEEAEKFFVEMKGRNIEPTVISYTTMIKGYVSVGRVDDG 346

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           + ++  +   GI P   + + LL GL +  ++ + +   +EM+ R I
Sbjct: 347 LRLFEEMKSFGIKPNAVTYSTLLPGLCDGEKMLEAQNVVKEMVERYI 393



 Score = 41.6 bits (96), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 39/199 (19%), Positives = 82/199 (41%), Gaps = 5/199 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            +NL+++ L  +G+  +     R + + GV     F ++   +   G  + A     +M 
Sbjct: 478 GYNLIIEYLCNSGQTSKAETLFRQLMKKGVQDPIAFNNLIRGHSKEGAPESAFEILKIMG 537

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
              V ++  A   L+ +  ++             ++    PD   F  ++E   ++G ++
Sbjct: 538 RREVPREADAYRLLIESFLKKGEPADAKTALDGMIENGHIPDSSLFRSVMESLFEDGRIQ 597

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A++    MVE+       ++A +     L+RG  V+EAL  + ++    C P    F  
Sbjct: 598 TASRVMNNMVEKGVKENMDLVA-KILEALLLRG-HVEEALGRIDLLMNNGCEPD---FDG 652

Query: 295 ALDILVKLNDSTHAVQLWD 313
            L +L     +  A++L D
Sbjct: 653 LLSVLCAKGKTIAALKLLD 671


>gi|255660880|gb|ACU25609.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 484

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 134/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNXLFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPT 289



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVER------TIKSYNXL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 58/301 (19%), Positives = 116/301 (38%), Gaps = 37/301 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + + +SP    +N M++   +  + E+       MK   +  ++ T+ ++   Y    + 
Sbjct: 177 KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQV 236

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP-DGDSFAI 222
           D+A+   + M   G++ + +  ++LL  +C  E  +   +     + K + P D   F  
Sbjct: 237 DDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMR 296

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+    K GN++ A      M+ R    P     Y   +    +  Q D+A+K L  +  
Sbjct: 297 LISSHCKSGNLDAAADVLKAMI-RLSV-PTEAGHYGXLIENFCKXGQYDKAVKLLDKLIE 354

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +             DI+++   + H                +   YN + E L  N +  
Sbjct: 355 K-------------DIILRPQSTLHL---------------EPSAYNPMIEYLCNNGQAX 386

Query: 343 EVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
           + E    ++ K   Q PT LN  T I        P+ A E+   +L   +   +++ N L
Sbjct: 387 KAETLVRQLXKLGVQDPTALN--TLIRGHSQEGSPDSAFELLKIMLRRKVBSEKSAYNSL 444

Query: 402 L 402
           +
Sbjct: 445 V 445


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 163/387 (42%), Gaps = 43/387 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDE 165
           RG + + Y   ++V+ L K G+       ++ M E D    + +++ I DS C     +E
Sbjct: 203 RGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNE 262

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           AV  F  M   G+   VV  NSL+  +C        ++ F   ++  + PD  +F+IL++
Sbjct: 263 AVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVD 322

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              KEG V EA   FG+M++     P+ ++ Y + +  + +     E+   L  M   N 
Sbjct: 323 ALCKEGVVLEALSVFGKMIQ-IAMEPD-IVTYSSLIHGVCKSSLWKESSTLLNEMLSRNI 380

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIM------------------------------ 315
            P +  FS  +D+  K    + A  + ++M                              
Sbjct: 381 RPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARK 440

Query: 316 ----MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
               MV  G  PD L+YN++ +   K++R+ E ++ F EM      P  +   T I+ L 
Sbjct: 441 VFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLC 500

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----L 427
            A  P  A E++  +  +G  P   + + LL G    G L +     E +   ++    +
Sbjct: 501 QAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHV 560

Query: 428 IYEVTMHKLKKAFYNESRSMRDIFDSL 454
           I ++ +  + KA   +    +++F SL
Sbjct: 561 ICKILLGGMCKA--GKLEDAKELFSSL 585



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/315 (20%), Positives = 137/315 (43%), Gaps = 7/315 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+ TF ++ +  C  G+  EA+   D +   G +  V     +++ +C+   +TS A+ +
Sbjct: 173 SIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKI-GKTSAAIVW 231

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           + ++ ++  +P+  S++I+++   K   V EA   F  M      +P  V+ Y + +  +
Sbjct: 232 MKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHM-RSIGISPT-VVTYNSLIYGM 289

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
               Q  +A    + M   N  P +  FS  +D L K      A+ ++  M+      PD
Sbjct: 290 CNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQI-AMEPD 348

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TY+ +   + K+    E     +EM+    +P  +  +  + +         A  I N
Sbjct: 349 IVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIIN 408

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            ++E G+ P   + N L+ G     ++ + R+  + M+N+      ++ + L K +    
Sbjct: 409 LMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSE 468

Query: 445 R--SMRDIFDSLERR 457
           R    + +FD +  +
Sbjct: 469 RIDEAKQLFDEMSHK 483



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 111/269 (41%), Gaps = 13/269 (4%)

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFA 221
           YD  V  +  M   GV   V  +  L++ +C   +        L ++ K+   P   +F 
Sbjct: 120 YDSVVSIYRKMEFFGVSCSVYTLTILINCLCHL-HLVGLGFSVLGKIFKLGFKPSIITFN 178

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+ G   EG + EA +    ++ R  + P  V  +   +  L +  +   A+ +++ M 
Sbjct: 179 TLINGLCIEGRIVEAMEQLDYIMSR-GYQPT-VYTHTMIVNGLCKIGKTSAAIVWMKKMV 236

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
             +C P +  +S  +D L K      AV L+  M    G  P  +TYN +   +  + + 
Sbjct: 237 ELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSI-GISPTVVTYNSLIYGMCNSGQW 295

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI----AIEIWNYILENGILPLEAS 397
            +    F EM+  EW   P       ++L+DA   E     A+ ++  +++  + P   +
Sbjct: 296 KQASILFKEML--EWNMKPD--VVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVT 351

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            + L+ G+       +      EML+R I
Sbjct: 352 YSSLIHGVCKSSLWKESSTLLNEMLSRNI 380



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 1/152 (0%)

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
           D+AL +   M   N FP +  F+  L  LV++      V ++   M F G      T  +
Sbjct: 86  DDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYR-KMEFFGVSCSVYTLTI 144

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +  CL     V        ++ K  ++P+ +   T I  L        A+E  +YI+  G
Sbjct: 145 LINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRG 204

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
             P   +   ++ GL  +G+ S    + ++M+
Sbjct: 205 YQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMV 236


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/323 (19%), Positives = 152/323 (47%), Gaps = 8/323 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT---FASIFDSYCGAGKY 163
           +G  L  Y  +++++ L K+G+  +    + ++   G++  PT   + ++ + YC     
Sbjct: 150 KGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLV--PTTVIYNTLINGYCQVRDL 207

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
             A   F+ M    +  D +  N+L++ +C+ E  T      +   K  VDP  ++F  L
Sbjct: 208 RGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTL 267

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++ +   G +E+      +M ++       V+++ + +    +  ++ EA+  L  M  +
Sbjct: 268 IDAYGTAGQLEKCFTVLSDMQQK--GIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYK 325

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
           +  P  + +++ +D  ++  D+  A  L +  M   G     +TYN++ + L ++ ++ E
Sbjct: 326 DVAPNAQVYNSIIDAYIESGDTEQAFLLVE-KMKNSGVSASIVTYNLLLKGLCRSSQIDE 384

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
            E+  + +     +P  ++  T I+   +  + + A+E+   + + GI P   + + L+ 
Sbjct: 385 AEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVS 444

Query: 404 GLRNLGRLSDVRRFAEEMLNRRI 426
            L + GR+ D+    ++ML++ +
Sbjct: 445 ALASAGRVHDMECLYQQMLHKNV 467



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 144/312 (46%), Gaps = 15/312 (4%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY----DSPSSAVDFFRWAGRGQRL 111
           +C+    A ++ +   L  TG++PT  +++  L   Y    D   +   F +   R  R 
Sbjct: 166 LCKDGKVAKAEQVLEMLVHTGLVPTT-VIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRP 224

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
               +N +++ L K     +  + V  M++ GV  S+ TF ++ D+Y  AG+ ++     
Sbjct: 225 DHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVL 284

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEK 229
             M   G++ DV++  S++ A C+   +   A+  L+  + K V P+   +  +++ + +
Sbjct: 285 SDMQQKGIKSDVISFGSVVKAFCKN-GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIE 343

Query: 230 EGNVEEANKTFGEMVERFEWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            G+ E+A      +VE+ + +     ++ Y   L  L R  Q+DEA + +  ++ +   P
Sbjct: 344 SGDTEQAFL----LVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRP 399

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
            +  ++  +       D+  A++L   M  + G  P   TY+ +   L    RVH++E  
Sbjct: 400 DVVSYNTIISACCNKGDTDKALELLQEMNKY-GIRPTLRTYHTLVSALASAGRVHDMECL 458

Query: 348 FHEMIKNEWQPT 359
           + +M+    +P+
Sbjct: 459 YQQMLHKNVEPS 470



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 122/293 (41%), Gaps = 7/293 (2%)

Query: 103 RWAGRGQRLSP---YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYC 158
           R  GR +   P   +++N+++  L ++G+          M + GV+ +  T+ ++ D + 
Sbjct: 3   RRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHV 62

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
             G  +      D M   G + ++V  N LLS +CR        +         + PDG 
Sbjct: 63  KGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGF 122

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +++IL +G  + G        F E +++      +  +    L  L +  +V +A + L 
Sbjct: 123 TYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCS--ILLNGLCKDGKVAKAEQVLE 180

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
           ++      PT   ++  ++   ++ D   A  +++ M   H   PD +TYN +   L K 
Sbjct: 181 MLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH-IRPDHITYNALINGLCKL 239

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
           + V + E    EM K+   P+     T I     A + E    + + + + GI
Sbjct: 240 EMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGI 292



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 9/225 (4%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERF---EWNPEHVLAYETFLITLIRGKQVD 271
           PD  S+ +++ G  + G   +A K F EMV+      W     + Y T +   ++G  ++
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNW-----ITYNTMIDGHVKGGDLE 68

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
              +    M  +   P +  ++  L  L +         L D  M  H  FPD  TY+++
Sbjct: 69  AGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMD-EMASHSMFPDGFTYSIL 127

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
           F+ L +      +   F E +K         C+  +  L    +   A ++   ++  G+
Sbjct: 128 FDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGL 187

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           +P     N L+ G   +  L       E+M +R I    +T + L
Sbjct: 188 VPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNAL 232



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 125/331 (37%), Gaps = 4/331 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N M+D   K G  E  +     M  DG   ++ T+  +    C AG+ DE  +  D M+
Sbjct: 54  YNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMA 113

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            H +  D    + L   + R     +    F   +KK V     + +ILL G  K+G V 
Sbjct: 114 SHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVA 173

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A +   EM+      P  V+ Y T +    + + +  A      MK  +  P    ++ 
Sbjct: 174 KAEQVL-EMLVHTGLVPTTVI-YNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNA 231

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            ++ L KL   T A  L  + M   G  P   T+N + +      ++ +      +M + 
Sbjct: 232 LINGLCKLEMVTKAEDLV-MEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQK 290

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
             +   ++  + +       +   A+ I + ++   + P     N ++      G     
Sbjct: 291 GIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQA 350

Query: 415 RRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
               E+M N  +    VT + L K     S+
Sbjct: 351 FLLVEKMKNSGVSASIVTYNLLLKGLCRSSQ 381



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 7/139 (5%)

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           PD+ +YN++   L ++ +  +  K F EM+     P  +   T I   +   + E    +
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRL 73

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKK 438
            + +L +G  P   + N LL GL   GR+ + R   +EM +  +      Y +    L +
Sbjct: 74  RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTR 133

Query: 439 AFYNESRSMRDIF-DSLER 456
               ESR+M  +F +SL++
Sbjct: 134 T--GESRTMLSLFAESLKK 150


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 159/371 (42%), Gaps = 51/371 (13%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKY 163
           +R+SP A  +N ++  L K    + M  A+ V+    V+ +P   T+ SI   YC +G+ 
Sbjct: 40  RRVSPDAVTYNSIIAALSKA---QAMDRAMEVLT---VMVMPNCFTYNSIMHGYCSSGQS 93

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           ++A+  F  M   G+E DVV  NSL+  +C+    T     F + VK+ + PD  ++  L
Sbjct: 94  EKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTL 153

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           L G+  +G + E +     MV+       HV  +   +    + ++VDE +     M+ +
Sbjct: 154 LHGYASKGALVEMHDLLALMVQNGMQLDHHV--FNILICAYTKQEKVDEVVLVFSKMRQQ 211

Query: 284 NCFPTLKFFSNALDILVK---LNDS----------------------THAVQLWD----- 313
              P    +   +D L K   L+D+                       HA+  +D     
Sbjct: 212 GLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKA 271

Query: 314 ----IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
                 ++  G  P+ + +N I + L K  RV E +K F  +      P  +  +T I  
Sbjct: 272 EELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDG 331

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRR 425
              A + + A+++   ++  G+ P   + + L+ G   + R+ D     +EM    +N  
Sbjct: 332 YCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPD 391

Query: 426 ILIYEVTMHKL 436
           I+ Y + +H L
Sbjct: 392 IITYNIILHGL 402



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 115/261 (44%), Gaps = 46/261 (17%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  S+  +++G  KEG+V++A  T+ EM++R   +P+ V  Y + +  L + + +D A+
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDR-RVSPDAV-TYNSIIAALSKAQAMDRAM 66

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           + L VM   NCF     +++ +        S  A+ ++   M   G  PD +TYN + + 
Sbjct: 67  EVLTVMVMPNCFT----YNSIMHGYCSSGQSEKAIGIFR-KMCSDGIEPDVVTYNSLMDY 121

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI----------------------TMLLD 372
           L KN +  E  K F  M+K   +P      T +                       M LD
Sbjct: 122 LCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLD 181

Query: 373 -------------ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
                         ++ +  + +++ + + G+ P   +   ++ GL  LGRL D     E
Sbjct: 182 HHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFE 241

Query: 420 EMLNR----RILIYEVTMHKL 436
           +M+++     +++Y   +H L
Sbjct: 242 QMIDKGLTPNVVVYTSLIHAL 262



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 115/284 (40%), Gaps = 39/284 (13%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G +L  + +N+++    K  + +++      M++ G+  +   + ++ D  C  G+ D+A
Sbjct: 177 GMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDA 236

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +++F+ M   G+  +VV   SL+ A+C  +            + + ++P+   F  +L+ 
Sbjct: 237 MLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDS 296

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             KEG V E+ K F +++     NP+ V+ Y T +       ++D A+K L         
Sbjct: 297 LCKEGRVIESKKLF-DLLGHIGVNPD-VITYSTLIDGYCLAGKMDGAMKLLT-------- 346

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
                                        MV  G  PDS+TY+ +     K  R+ +   
Sbjct: 347 ----------------------------GMVSVGLKPDSVTYSTLINGYCKINRMEDALA 378

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
            F EM  N   P  +     +  L        A E++  I E+G
Sbjct: 379 LFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESG 422



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 111/259 (42%), Gaps = 13/259 (5%)

Query: 139 MKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           M +DG     + ++ +I D     G  D+A +++  M    V  D V  NS+++A+ + +
Sbjct: 1   MADDGRCPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQ 60

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
               RA+E L     +V P+  ++  ++ G+   G  E+A   F +M    +     V+ 
Sbjct: 61  -AMDRAMEVLT---VMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCS--DGIEPDVVT 114

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI-- 314
           Y + +  L +  +  EA K    M      P +  +     +L         V++ D+  
Sbjct: 115 YNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGT---LLHGYASKGALVEMHDLLA 171

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
           +MV +G   D   +N++     K ++V EV   F +M +    P  +N  T I  L    
Sbjct: 172 LMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLG 231

Query: 375 EPEIAIEIWNYILENGILP 393
             + A+  +  +++ G+ P
Sbjct: 232 RLDDAMLNFEQMIDKGLTP 250


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 141/334 (42%), Gaps = 3/334 (0%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           S  ++N ++  LG+ G+ ++       MK+D + +L T+  + D  C AGK + A++  D
Sbjct: 374 SVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRD 433

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M   G+  +V+ VN ++  +C+ +        F     K   PD  ++  L+EG  + G
Sbjct: 434 AMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHG 493

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V+EA K + +M++  +  P  V+ Y + +    +  + ++  K    M    C P L  
Sbjct: 494 RVDEAYKLYEQMLDANQI-PNAVV-YTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLL 551

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
            +  +D + K  +      L+  +    G  PD+ +Y ++   L+K    HE  + F+ M
Sbjct: 552 LNTYMDCVFKAGEIEKGRALFQEIKNL-GFIPDARSYTILIHGLVKAGFAHEAYELFYTM 610

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
            +           T I     + +   A ++   +   G  P   +   ++ GL  + RL
Sbjct: 611 KEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRL 670

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            +     EE  ++ I +  V    L   F    R
Sbjct: 671 DEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGR 704



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 145/338 (42%), Gaps = 9/338 (2%)

Query: 88  LQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-S 146
           L  S DS      F +    G  ++ + +  ++ V  + GR +   + +  MK + +   
Sbjct: 210 LSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPD 269

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALE 204
           +  +    D +  AGK D A   F  M  +G+  D V   S++  +C+ +  N+     E
Sbjct: 270 VVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFE 329

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
            +++ K++  P   ++  ++ G+   G  E+A        +R +     V++Y   L  L
Sbjct: 330 HMDQNKQV--PCAYAYNTMIMGYGMAGKFEDAYSLLER--QRRKGCIPSVVSYNCILSCL 385

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            R  QVDEALK    MK ++  P L  ++  +D+L K      A+ + D M    G FP+
Sbjct: 386 GRKGQVDEALKKFEEMK-KDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKD-AGLFPN 443

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +T N++ + L K +R+ +    F  +     +P  +   + I  L      + A +++ 
Sbjct: 444 VITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYE 503

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
            +L+   +P       L+      GR  D  +   EML
Sbjct: 504 QMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEML 541



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 132/319 (41%), Gaps = 39/319 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++ +++  L K G   + +     MKE G VL    + ++ D +C +GK ++A    + M
Sbjct: 586 SYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEM 645

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G E  VV   S++  + + +      + F     K ++ +   ++ L++G+ K G +
Sbjct: 646 KTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRI 705

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA     E++++    P +V  +   L  L++ +++ EAL   + MK   C P      
Sbjct: 706 DEAYLIMEELMQK-GLTP-NVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTP------ 757

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
                                         + +TY+++   L K ++ ++   F+ EM K
Sbjct: 758 ------------------------------NYITYSILIHGLCKIRKFNKAFVFWQEMQK 787

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
             ++P      T I+ L  A     A  ++    E G +   A  N ++ GL N  R SD
Sbjct: 788 QGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASD 847

Query: 414 VRRFAEEMLNRRILIYEVT 432
             R  EE   +   IY  T
Sbjct: 848 AYRLFEEARLKGCSIYTKT 866



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 136/368 (36%), Gaps = 78/368 (21%)

Query: 56  ICEILAHAS-SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLS 112
           +C+IL        +E+ LA   + P P+LV  VL+   D  ++AV++FRWA R   +   
Sbjct: 71  VCQILETGPWGSSVENRLAELDLNPNPELVIGVLRRLKD-VNNAVNYFRWAERLTDRAHC 129

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFD 171
             A+N ++ V+ +  +F  +   +  M   G   S  T   I  S+  + K  EA     
Sbjct: 130 REAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQ 189

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M          A  +L+ A+      TSR              D D    L +  ++ G
Sbjct: 190 TMRKLKFRPAFSAYTNLIGAL-----STSR--------------DSDCMLTLFQQMQELG 230

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
                                +V  + T +    R  +VD AL  L  MK          
Sbjct: 231 Y------------------AVNVHLFTTLIRVFAREGRVDAALSLLDEMK---------- 262

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
            SN+L+                         PD + YN+  +C  K  +V    K FHEM
Sbjct: 263 -SNSLE-------------------------PDVVLYNVCIDCFGKAGKVDMAWKXFHEM 296

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
             N      +   + I +L  AD    A+E++ ++ +N  +P   + N +++G    G+ 
Sbjct: 297 KANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKF 356

Query: 412 SDVRRFAE 419
            D     E
Sbjct: 357 EDAYSLLE 364



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/142 (20%), Positives = 70/142 (49%), Gaps = 3/142 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G  L+   ++ ++D  GK GR ++ +  +  + + G+  ++ T+  + D+   A +  E
Sbjct: 683 KGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISE 742

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A++ F  M       + +  + L+  +C+   + ++A  F   ++K    P+  ++  ++
Sbjct: 743 ALVCFQSMKDLKCTPNYITYSILIHGLCKIR-KFNKAFVFWQEMQKQGFKPNVFTYTTMI 801

Query: 225 EGWEKEGNVEEANKTFGEMVER 246
            G  K GN+ EA+  F +  E+
Sbjct: 802 SGLAKAGNIVEADTLFEKFKEK 823


>gi|255660918|gb|ACU25628.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 484

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHGSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY  AG   E+V  F  M   GVE+   + ++L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELGVERTTKSYDTLFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFDDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K++DEA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  + G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGY-GIKPNAITYSTLLPGLCNAEKMSEARSVLKEMVDKYIAPT 289



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 105/226 (46%), Gaps = 11/226 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K G V+E+ K F +M    VER         +Y+T 
Sbjct: 68  LLDMPKKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELGVER------TTKSYDTL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F+  +           A + +D M     
Sbjct: 122 FKVILRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFDDMKSREI 181

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
           + PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 182 S-PDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++ I
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSVLKEMVDKYI 286



 Score = 45.1 bits (105), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 102/260 (39%), Gaps = 35/260 (13%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ T+ ++   Y    + D+A+   + M  +G++ + +  ++LL  +C  E  +      
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSVL 278

Query: 206 LNRVKKIVDPDGDS-FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
              V K + P  +S F  L+ G  K GN++ A      M+ R    P     Y   +   
Sbjct: 279 KEMVDKYIAPTDNSIFMRLISGQCKTGNLDAAADVLKAMI-RLSV-PTEAGHYGVLIENF 336

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            +  Q D+A+K L  +  +             DI+++   + H                +
Sbjct: 337 CKADQHDKAVKLLDKLIEK-------------DIILRPQSTLHM---------------E 368

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIW 383
              YN + E L  N +  + E    +++K   Q PT LN  T +        P+ A E+ 
Sbjct: 369 PSAYNPMIEYLCNNGQTAKAEALVRQLLKLGVQDPTALN--TLVRGHSQEGSPDSAFELL 426

Query: 384 NYILENGILPLEASANELLV 403
             +L   +   E SA + LV
Sbjct: 427 KIMLRRKV-DSEKSAYDSLV 445


>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
 gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 148/337 (43%), Gaps = 12/337 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           YA+N++++     G+       +R M ++G   SL TF ++ +++C  G   EA   FD 
Sbjct: 185 YAYNILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDG 244

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G   +VV  N+L++   +  +     + +     K V PD  +F IL+ G  + G 
Sbjct: 245 MKEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVAGHYRYGR 304

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            E+ ++   ++ +           Y   +  L     +DEA+KFL  M  +   PT+  F
Sbjct: 305 EEDRDRLLRDLSQSGS--LSISSLYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAF 362

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           ++ +    +      A + + +M+ F G FP SLT + +   L K  R+ E     +EMI
Sbjct: 363 NSIIAAYSRAGLEEKAYKAYRMMVKF-GLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMI 421

Query: 353 KNEWQPTPLNCATAITMLLDA----DEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
               +  P+N A A T+LLD      +   A  +WN +   GI P   + +  + GL  +
Sbjct: 422 V---EGLPINKA-AFTLLLDGYFRMGDVAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIV 477

Query: 409 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           G + +      +M  +  +      + L + F N  R
Sbjct: 478 GLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGR 514



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 130/320 (40%), Gaps = 12/320 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEA 166
           G R S  A  ++  +L + G    +W  +R M   G       F ++   +C  G     
Sbjct: 109 GLRPSSSAITILFKLLLRIGDHGSVWKLLRGMIHQGPRPCNRNFNAVILGFCRKGHVKVG 168

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLE 225
                VM     + DV A N L++A C +  QT  AL ++   +     P   +F  ++ 
Sbjct: 169 ESLLCVMQKFKCQPDVYAYNILINAYCTR-GQTFDALGWMRFMIDNGCTPSLVTFGTVIN 227

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            +  +GN+ EA   F  M E    +  +V+ Y T +   ++ + + +A      MK +  
Sbjct: 228 AFCNQGNMMEARNLFDGMKE--AGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAV 285

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMM---VFHGAFPDSLTYNMIFECLIKNKRVH 342
            P    F    +ILV  +      +  D ++      G+   S  YN+    L     + 
Sbjct: 286 APDCTTF----NILVAGHYRYGREEDRDRLLRDLSQSGSLSISSLYNICVSGLCWAGWLD 341

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E  KF  +M++    PT +   + I     A   E A + +  +++ G+ P   + + L+
Sbjct: 342 EAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSLI 401

Query: 403 VGLRNLGRLSDVRRFAEEML 422
           +GL  L RL + R    EM+
Sbjct: 402 MGLSKLWRLQEARDLLYEMI 421



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 130/319 (40%), Gaps = 6/319 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+ V  L   G  ++    +  M E G+  ++  F SI  +Y  AG  ++A  ++ +M 
Sbjct: 327 YNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMV 386

Query: 175 MHGVEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             G+    +  +SL+  + +    Q +R L +   V+ +   +  +F +LL+G+ + G+V
Sbjct: 387 KFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGL-PINKAAFTLLLDGYFRMGDV 445

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A   + EM  R   +P+ V A+  F+  L     VDEA      M  +   P   F  
Sbjct: 446 AGAYSLWNEMEGR-GIHPDAV-AFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPN-NFVY 502

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
           N+L      +       + +  M   G  PD  T N+I   L K  R+      F  M  
Sbjct: 503 NSLIRGFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHH 562

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               P  +   T I     A +     E+ N +   G  P   + N  L GL    ++S 
Sbjct: 563 TGLIPDIVTYNTLIDGYCKAFDTVSTDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSR 622

Query: 414 VRRFAEEMLNRRILIYEVT 432
                EE+++  ++   VT
Sbjct: 623 AVMMLEELISAGVVPDTVT 641



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/173 (20%), Positives = 80/173 (46%), Gaps = 3/173 (1%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           GRG      A++  ++ L   G  ++ ++    M + G + +   + S+   +C +G+  
Sbjct: 457 GRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQ 516

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA+M    M+  G+  D+   N +++ +C++    S +  F N     + PD  ++  L+
Sbjct: 517 EALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLI 576

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
           +G+ K  +    ++   +M     W+P+ +  Y   L  L  G+++  A+  L
Sbjct: 577 DGYCKAFDTVSTDEVVNKMYAT-GWDPD-ITTYNIRLHGLCTGRKMSRAVMML 627



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 84/405 (20%), Positives = 151/405 (37%), Gaps = 48/405 (11%)

Query: 81  PDL-VHEVLQLSYDSPSSAVDFFRWA----GRGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           PD+  + +L  +Y +     D   W       G   S   +  +++     G   +  N 
Sbjct: 182 PDVYAYNILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNL 241

Query: 136 VRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
              MKE G + ++  + ++ + Y  A    +A M ++ M    V  D    N L++   R
Sbjct: 242 FDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVAGHYR 301

Query: 195 QENQTSR----------------------------------ALEFL-NRVKKIVDPDGDS 219
              +  R                                  A++FL + ++K + P   +
Sbjct: 302 YGREEDRDRLLRDLSQSGSLSISSLYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVA 361

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  ++  + + G  E+A K +  MV +F   P   L   + ++ L +  ++ EA   L  
Sbjct: 362 FNSIIAAYSRAGLEEKAYKAYRMMV-KFGLFPSS-LTCSSLIMGLSKLWRLQEARDLLYE 419

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M  E        F+  LD   ++ D   A  LW+  M   G  PD++ ++     L    
Sbjct: 420 MIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWN-EMEGRGIHPDAVAFSAFINGLSIVG 478

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
            V E    F +M K  + P      + I    ++   + A+ +   +   G+LP   + N
Sbjct: 479 LVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEALMLEREMARKGLLPDIFTTN 538

Query: 400 ELLVGLRNLGRL---SDV-RRFAEEMLNRRILIYEVTMHKLKKAF 440
            ++ GL   GR+   SDV R      L   I+ Y   +    KAF
Sbjct: 539 IIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDGYCKAF 583


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 144/329 (43%), Gaps = 6/329 (1%)

Query: 83  LVHEVLQLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           LVH + Q  ++  S AV    R   +G +     +  +++ L K G  +   N +  M++
Sbjct: 186 LVHGLFQ--HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEK 243

Query: 142 DGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
             +   +  + +I D  C     D+A   F+ M   G++ DV   N L+S +C     + 
Sbjct: 244 GKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSD 303

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
            +    + ++K ++PD   F  L++ + KEG + EA K + EMV+     P+ V+AY T 
Sbjct: 304 ASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPD-VVAYNTL 362

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +    + K+V+E ++  R M           ++  +    +  D  +A  ++   MV  G
Sbjct: 363 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFK-QMVSDG 421

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN++ + L  N  V      F  M K + +   +   T I  L  A + E   
Sbjct: 422 VHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGW 481

Query: 381 EIWNYILENGILPLEASANELLVGLRNLG 409
           +++  +   G+ P   +   ++ G    G
Sbjct: 482 DLFCSLSLKGVKPNVVTYTTMMSGFCRKG 510



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 133/296 (44%), Gaps = 8/296 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++        K  EAV   + M + G + D+V   ++++ +C++  +   AL  LN+
Sbjct: 182 TFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR-GEPDLALNLLNK 240

Query: 209 VKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++K  ++ D   +  +++G  K  ++++A   F +M E     P+ V  Y   +  L   
Sbjct: 241 MEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKM-ETKGIKPD-VFTYNPLISCLCNY 298

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +  +A + L  M  +N  P L FF+  +D  VK      A +L+D M+     FPD + 
Sbjct: 299 GRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVA 358

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN + +   K KRV E  + F EM +       +   T I     A + + A  ++  ++
Sbjct: 359 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 418

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKKA 439
            +G+ P   + N LL GL N G +       E M  R     I+ Y   +  L KA
Sbjct: 419 SDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKA 474



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 131/317 (41%), Gaps = 10/317 (3%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F+ +  +     K+D  +   + M   G+  ++   +  ++  CR+ +Q S AL  
Sbjct: 74  SIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRR-SQLSLALAI 132

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+   P   +   LL G+     + EA     +MVE   + P+ V  + T +  L
Sbjct: 133 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE-MGYQPDTV-TFTTLVHGL 190

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-P 323
            +  +  EA+  +  M  + C P L  +   ++ L K  +   A+ L + M    G    
Sbjct: 191 FQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKME--KGKIEA 248

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D + YN I + L K K + +    F++M     +P        I+ L +      A  + 
Sbjct: 249 DVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLL 308

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK-LKKAF-- 440
           + +LE  I P     N L+      G+L +  +  +EM+  +    +V  +  L K F  
Sbjct: 309 SDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCK 368

Query: 441 YNESRSMRDIFDSLERR 457
           Y       ++F  + +R
Sbjct: 369 YKRVEEGMEVFREMSQR 385



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 120/285 (42%), Gaps = 5/285 (1%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           K D+A+  F  M        +V  + LLSAI +  N+    +    +++ + +  +  ++
Sbjct: 55  KLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKM-NKFDLVISLGEQMQNLGISHNLYTY 113

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           +I +  + +   +  A    G+M+ +  + P  ++   + L     G ++ EA+  +  M
Sbjct: 114 SIFINYFCRRSQLSLALAILGKMM-KLGYGPS-IVTLNSLLNGFCHGNRISEAVALVDQM 171

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                 P    F+  +  L + N ++ AV L +  MV  G  PD +TY  +   L K   
Sbjct: 172 VEMGYQPDTVTFTTLVHGLFQHNKASEAVALVE-RMVVKGCQPDLVTYGAVINGLCKRGE 230

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
                   ++M K + +   +   T I  L      + A +++N +   GI P   + N 
Sbjct: 231 PDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNP 290

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           L+  L N GR SD  R   +ML + I    V  + L  AF  E +
Sbjct: 291 LISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGK 335



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 2/162 (1%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KE 141
           L+H   Q + D  ++ + F +    G       +N+++D L  NG  E        M K 
Sbjct: 397 LIHGFFQ-ARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKR 455

Query: 142 DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           D  L + T+ ++ ++ C AGK ++    F  +S+ GV+ +VV   +++S  CR+  +   
Sbjct: 456 DMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEA 515

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
              F+   +    P+  ++  L+    ++G+   + +   EM
Sbjct: 516 DALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEM 557


>gi|357161570|ref|XP_003579133.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Brachypodium distachyon]
          Length = 721

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 175/406 (43%), Gaps = 26/406 (6%)

Query: 50  SSSARIICEILAHASS--DDIESALACTGIIPTPDLVHEVLQLSYDSPS-SAVDFFRWAG 106
           S   R  C +L    S    +E+ L     + +P  V  VL+      + +A +FFRWA 
Sbjct: 58  SRLVRDTCRLLEQRGSWTPKLEAQLRHLLRVLSPPQVRAVLRAQAQGDARAAFEFFRWAD 117

Query: 107 R--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKY 163
           R    R +P  ++ M+ +L +    +     VR+M   GV   P  FA +  SY  AGK 
Sbjct: 118 RQWQYRHAPEVFDEMLGLLSRTRLHDPARRVVRLMIRRGVRRGPRQFAHLMLSYSRAGKL 177

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
             A+    +M   G   D +++ ++   +     +  +AL F +R++++ V+PD  ++  
Sbjct: 178 RSAMRVLQLMQTDGCAPD-ISICNVAVNVLVVAGRVDKALGFADRMRRVGVEPDVVTYNC 236

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G      V EA +  G M++     P   ++Y T +  L + K+V E    L  M+ 
Sbjct: 237 LIKGLCSVRRVVEALEMIGVMLK--NGCPPDKISYYTVMSFLCKEKRVSEVRSLLATMRN 294

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA--FPDSLTYNMIFECLIKNKR 340
           +    T +   N L  +  L    HA +  + +    G     D + Y+ +      N R
Sbjct: 295 DAGLLTDQVTYNML--IHVLAKHGHADEALEFLRESEGKRFRVDEVGYSAVVHSFCLNGR 352

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           + E ++   EMI  E  P  +  +  +       E + A ++  ++ +NG  P   +   
Sbjct: 353 MAEAKEIVGEMISKECHPDVVTYSAVVDGFCRIGEIDQARKMMKHMYKNGCKPNIVTHTA 412

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRI--------LIYEVTMHKLKK 438
           LL GL  +G+ S+    A E+LN+          + Y V MH  ++
Sbjct: 413 LLNGLCKVGKSSE----AWELLNKSGEDWWTPSDITYSVVMHGFRR 454



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/350 (20%), Positives = 160/350 (45%), Gaps = 9/350 (2%)

Query: 98  AVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFD 155
           A++F R + G+  R+    ++ +V     NGR  +    V  ++ ++    + T++++ D
Sbjct: 321 ALEFLRESEGKRFRVDEVGYSAVVHSFCLNGRMAEAKEIVGEMISKECHPDVVTYSAVVD 380

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-D 214
            +C  G+ D+A      M  +G + ++V   +LL+ +C+   ++S A E LN+  +    
Sbjct: 381 GFCRIGEIDQARKMMKHMYKNGCKPNIVTHTALLNGLCKV-GKSSEAWELLNKSGEDWWT 439

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P   ++++++ G+ +EG ++E+     +M+++  + P  V      +  L +  +  EA 
Sbjct: 440 PSDITYSVVMHGFRREGKLKESCDVVAQMLQK-GFFPTTV-EINLLIHALCKEGKPAEAK 497

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           +F+   + + C   +  F+  +    +  D   A+ L D + + +   PD +TY ++   
Sbjct: 498 EFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLLDDLYLSN-RHPDVVTYTVVVNA 556

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L +  R+ E      +M+     PT +   T I    +    E  +++ + +L      L
Sbjct: 557 LGRKGRLKEATGLVEKMLNRGLVPTLVTYRTVIHRYCEKGTVEELVDLLDKMLARQ--EL 614

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           ++  N+++  L   G+L++      ++L         T H L ++F N  
Sbjct: 615 KSVYNQVIEKLCAFGKLNEAYGLLSKVLRTASQRDAQTCHILMESFLNRG 664



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 128/319 (40%), Gaps = 47/319 (14%)

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEE 235
           G+  D V  N L+  + +       ALEFL   + K    D   ++ ++  +   G + E
Sbjct: 297 GLLTDQVTYNMLIHVLAKH-GHADEALEFLRESEGKRFRVDEVGYSAVVHSFCLNGRMAE 355

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A +  GEM+ + E +P+ V+ Y   +    R  ++D+A K ++ M    C P +   +  
Sbjct: 356 AKEIVGEMISK-ECHPD-VVTYSAVVDGFCRIGEIDQARKMMKHMYKNGCKPNIVTHTAL 413

Query: 296 LDILVKLNDSTHAVQL--------W---DI-----------------------MMVFHGA 321
           L+ L K+  S+ A +L        W   DI                        M+  G 
Sbjct: 414 LNGLCKVGKSSEAWELLNKSGEDWWTPSDITYSVVMHGFRREGKLKESCDVVAQMLQKGF 473

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
           FP ++  N++   L K  +  E ++F  +          +N  T I       + E A+ 
Sbjct: 474 FPTTVEINLLIHALCKEGKPAEAKEFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALS 533

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLK 437
           + + +  +   P   +   ++  L   GRL +     E+MLNR     ++ Y   +H+  
Sbjct: 534 LLDDLYLSNRHPDVVTYTVVVNALGRKGRLKEATGLVEKMLNRGLVPTLVTYRTVIHR-- 591

Query: 438 KAFYNESRSMRDIFDSLER 456
              Y E  ++ ++ D L++
Sbjct: 592 ---YCEKGTVEELVDLLDK 607


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 141/334 (42%), Gaps = 3/334 (0%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           S  ++N ++  LG+ G+ ++       MK+D + +L T+  + D  C AGK + A++  D
Sbjct: 374 SVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRD 433

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M   G+  +V+ VN ++  +C+ +        F     K   PD  ++  L+EG  + G
Sbjct: 434 AMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHG 493

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V+EA K + +M++  +  P  V+ Y + +    +  + ++  K    M    C P L  
Sbjct: 494 RVDEAYKLYEQMLDANQI-PNAVV-YTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLL 551

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
            +  +D + K  +      L+  +    G  PD+ +Y ++   L+K    HE  + F+ M
Sbjct: 552 LNTYMDCVFKAGEIEKGRALFQEIKNL-GFIPDARSYTILIHGLVKAGFAHEAYELFYTM 610

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
            +           T I     + +   A ++   +   G  P   +   ++ GL  + RL
Sbjct: 611 KEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRL 670

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            +     EE  ++ I +  V    L   F    R
Sbjct: 671 DEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGR 704



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 145/338 (42%), Gaps = 9/338 (2%)

Query: 88  LQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-S 146
           L  S DS      F +    G  ++ + +  ++ V  + GR +   + +  MK + +   
Sbjct: 210 LSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPD 269

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALE 204
           +  +    D +  AGK D A   F  M  +G+  D V   S++  +C+ +  N+     E
Sbjct: 270 VVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFE 329

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
            +++ K++  P   ++  ++ G+   G  E+A        +R +     V++Y   L  L
Sbjct: 330 HMDQNKQV--PCAYAYNTMIMGYGMAGKFEDAYSLLER--QRRKGCIPSVVSYNCILSCL 385

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            R  QVDEALK    MK ++  P L  ++  +D+L K      A+ + D M    G FP+
Sbjct: 386 GRKGQVDEALKKFEEMK-KDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKD-AGLFPN 443

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +T N++ + L K +R+ +    F  +     +P  +   + I  L      + A +++ 
Sbjct: 444 VITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYE 503

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
            +L+   +P       L+      GR  D  +   EML
Sbjct: 504 QMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEML 541



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 132/319 (41%), Gaps = 39/319 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++ +++  L K G   + +     MKE G VL    + ++ D +C +GK ++A    + M
Sbjct: 586 SYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEM 645

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G E  VV   S++  + + +      + F     K ++ +   ++ L++G+ K G +
Sbjct: 646 KTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRI 705

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA     E++++    P +V  +   L  L++ +++ EAL   + MK   C P      
Sbjct: 706 DEAYLIMEELMQK-GLTP-NVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTP------ 757

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
                                         + +TY+++   L K ++ ++   F+ EM K
Sbjct: 758 ------------------------------NYITYSILIHGLCKIRKFNKAFVFWQEMQK 787

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
             ++P      T I+ L  A     A  ++    E G +   A  N ++ GL N  R SD
Sbjct: 788 QGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASD 847

Query: 414 VRRFAEEMLNRRILIYEVT 432
             R  EE   +   IY  T
Sbjct: 848 AYRLFEEARLKGCSIYTKT 866



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 137/368 (37%), Gaps = 78/368 (21%)

Query: 56  ICEILAHAS-SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLS 112
           +C+IL        +E+ LA   + P P+LV  VL+   D  ++AV++FRWA R   +   
Sbjct: 71  VCQILETGPWGSSVENRLAELDLNPNPELVIGVLRRLKD-VNNAVNYFRWAERLTDRAHC 129

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFD 171
             A+N ++ V+ +  +F  +   +  M   G   S  T   I  S+  + K  EA     
Sbjct: 130 REAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQ 189

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M          A  +L+ A+      TSR              D D    L +  ++ G
Sbjct: 190 TMRKLKFRPAFSAYTNLIGAL-----STSR--------------DSDCMLTLFQQMQELG 230

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
                                +V  + T +    R  +VD AL  L  MK          
Sbjct: 231 Y------------------AVNVHLFTTLIRVFAREGRVDAALSLLDEMK---------- 262

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
            SN+L+                         PD + YN+  +C  K  +V    KFFHEM
Sbjct: 263 -SNSLE-------------------------PDVVLYNVCIDCFGKAGKVDMAWKFFHEM 296

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
             N      +   + I +L  AD    A+E++ ++ +N  +P   + N +++G    G+ 
Sbjct: 297 KANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKF 356

Query: 412 SDVRRFAE 419
            D     E
Sbjct: 357 EDAYSLLE 364



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/142 (20%), Positives = 70/142 (49%), Gaps = 3/142 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G  L+   ++ ++D  GK GR ++ +  +  + + G+  ++ T+  + D+   A +  E
Sbjct: 683 KGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISE 742

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A++ F  M       + +  + L+  +C+   + ++A  F   ++K    P+  ++  ++
Sbjct: 743 ALVCFQSMKDLKCTPNYITYSILIHGLCKIR-KFNKAFVFWQEMQKQGFKPNVFTYTTMI 801

Query: 225 EGWEKEGNVEEANKTFGEMVER 246
            G  K GN+ EA+  F +  E+
Sbjct: 802 SGLAKAGNIVEADTLFEKFKEK 823


>gi|125562258|gb|EAZ07706.1| hypothetical protein OsI_29963 [Oryza sativa Indica Group]
          Length = 465

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 116/267 (43%), Gaps = 6/267 (2%)

Query: 129 FEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           F  +W+    M+  G+ LS  TF+++  SY  +   D+AV  F+ +   G  Q     N+
Sbjct: 134 FTHLWSLAADMRALGLPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNA 193

Query: 188 LLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           LL A+C      + A + L R+ +K V PD  +F+ L++ W   G + EA     +M ER
Sbjct: 194 LLDALC-ANGSFAGAYKLLRRMARKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMAER 252

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P  V   +  +  L+R  +++EA  F   M  E   P +  F++  + L    D  
Sbjct: 253 GFHPP--VRGRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVE 310

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            AV L        G  PD  TY ++   + K  R+ E  + F+  +++  +P P   A  
Sbjct: 311 FAVALLADASS-RGLCPDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAI 369

Query: 367 ITMLLDADEPEIAIEIWNYILENGILP 393
           I  L  A     A   +  +   G  P
Sbjct: 370 IKALCKAGRFADAFAFFGDMKSKGHPP 396



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 102/246 (41%), Gaps = 8/246 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D L  NG F   +  +R M   GV     TF+++ D++C AGK  EA    D M+
Sbjct: 191 YNALLDALCANGSFAGAYKLLRRMARKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMA 250

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G    V   + L+  + R           L   K+ V PD  +F  L E     G+VE
Sbjct: 251 ERGFHPPVRGRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVE 310

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK--FLRVMKGENCFPTLKFF 292
            A     +   R    P+ +  Y+  +  + +  ++DEA +  +  +  G   FP+L  +
Sbjct: 311 FAVALLADASSR-GLCPD-ISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSL--Y 366

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +  L K      A   +  M    G  P+   Y M+ +  ++  R  E   +  EM 
Sbjct: 367 AAIIKALCKAGRFADAFAFFGDMKS-KGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMS 425

Query: 353 KNEWQP 358
           +  + P
Sbjct: 426 EAGFAP 431


>gi|125604075|gb|EAZ43400.1| hypothetical protein OsJ_28005 [Oryza sativa Japonica Group]
          Length = 461

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 116/267 (43%), Gaps = 6/267 (2%)

Query: 129 FEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           F  +W+    M+  G+ LS  TF+++  SY  +   D+AV  F+ +   G  Q     N+
Sbjct: 130 FTHLWSLAADMRALGLPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNA 189

Query: 188 LLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           LL A+C      + A + L R+ +K V PD  +F+ L++ W   G + EA     +M ER
Sbjct: 190 LLDALC-ANGSFAGAYKLLRRMARKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMAER 248

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P  V   +  +  L+R  +++EA  F   M  E   P +  F++  + L    D  
Sbjct: 249 GFHPP--VRGRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVE 306

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            AV L        G  PD  TY ++   + K  R+ E  + F+  +++  +P P   A  
Sbjct: 307 FAVALLADASS-RGLCPDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAI 365

Query: 367 ITMLLDADEPEIAIEIWNYILENGILP 393
           I  L  A     A   +  +   G  P
Sbjct: 366 IKALCKAGRFADAFAFFGDMKSKGHPP 392



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 102/246 (41%), Gaps = 8/246 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D L  NG F   +  +R M   GV     TF+++ D++C AGK  EA    D M+
Sbjct: 187 YNALLDALCANGSFAGAYKLLRRMARKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMA 246

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G    V   + L+  + R           L   K+ V PD  +F  L E     G+VE
Sbjct: 247 ERGFHPPVRGRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVE 306

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK--FLRVMKGENCFPTLKFF 292
            A     +   R    P+ +  Y+  +  + +  ++DEA +  +  +  G   FP+L  +
Sbjct: 307 FAVALLADASSR-GLCPD-ISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSL--Y 362

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +  L K      A   +  M    G  P+   Y M+ +  ++  R  E   +  EM 
Sbjct: 363 AAIIKALCKAGRFADAFAFFGDMKS-KGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMS 421

Query: 353 KNEWQP 358
           +  + P
Sbjct: 422 EAGFAP 427


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 149/329 (45%), Gaps = 10/329 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L +NG FE++   +  M E G    +  +A+I D  C  G  + A    + M 
Sbjct: 254 FNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMP 313

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
            +G++ +VV  N++L  +C  E +   A E L+ + +K    D  +F IL++ + + G V
Sbjct: 314 SYGLKPNVVCYNTVLKGLCSAE-RWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLV 372

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +   +   +M+      P+ V+ Y T +    +   +DEA+  L+ M    C P    ++
Sbjct: 373 DRVIELLEQMLSH-GCMPD-VITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYT 430

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             L  L        A +L    M+  G  P+ +T+N +   L K   V +  +   +M+ 
Sbjct: 431 IVLKGLCSAGRWVDAEELMS-QMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLV 489

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           N   P  ++ +T I  L  A + E A+E+ N ++  GI P     + +   L   GR++ 
Sbjct: 490 NGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNK 549

Query: 414 VRRFAEEMLNRRI----LIYEVTMHKLKK 438
           V +  + + +  I    ++Y   +  L K
Sbjct: 550 VIQMFDNIKDTTIRSDAVLYNAVISSLCK 578



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/422 (20%), Positives = 165/422 (39%), Gaps = 46/422 (10%)

Query: 76  GIIPTPDLVHEVLQLSYDSP---SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G  P P + H +L+ +  S    +S         +G  L     NL+++ + + G  ++ 
Sbjct: 141 GCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEA 200

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +R +   G    + ++ ++    C A ++ +     D M       ++V  N+L+  
Sbjct: 201 VGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 192 ICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +CR      R  E L ++ +    PD   +A +++G  KEG++E AN+    M   +   
Sbjct: 261 LCRN-GLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM-PSYGLK 318

Query: 251 PEHVLAYETFLITLIRGKQ-----------------------------------VDEALK 275
           P +V+ Y T L  L   ++                                   VD  ++
Sbjct: 319 P-NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIE 377

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
            L  M    C P +  ++  ++   K      AV L    M   G  P++++Y ++ + L
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLK-SMSSCGCKPNTVSYTIVLKGL 436

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
               R  + E+   +MI+    P P+   T I  L      E AIE+   +L NG  P  
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 496

Query: 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI--FDS 453
            S + ++ GL   G+  +       M+N+ I    +    +  A   E R  + I  FD+
Sbjct: 497 ISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDN 556

Query: 454 LE 455
           ++
Sbjct: 557 IK 558



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 109/249 (43%), Gaps = 4/249 (1%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
           L    +N++VD   +NG  +++   +  M   G +  + T+ ++ + +C  G  DEAVM 
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVML 413

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
              MS  G + + V+   +L  +C               +++   P+  +F  L+    K
Sbjct: 414 LKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK 473

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +G VE+A +   +M+     +P+ +++Y T +  L +  + +EAL+ L VM  +   P  
Sbjct: 474 KGLVEQAIELLKQMLVN-GCSPD-LISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNT 531

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             +S+    L +       +Q++D  +       D++ YN +   L K         FF 
Sbjct: 532 IIYSSIACALSREGRVNKVIQMFD-NIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFA 590

Query: 350 EMIKNEWQP 358
            M+ N   P
Sbjct: 591 YMVSNGCMP 599



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 71/134 (52%), Gaps = 3/134 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +++ ++D LGK G+ E+    + VM   G+  +   ++SI  +    G+ ++ +  FD +
Sbjct: 498 SYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNI 557

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGN 232
               +  D V  N+++S++C++  +T RA++F    V     P+  ++ +L++G   EG 
Sbjct: 558 KDTTIRSDAVLYNAVISSLCKRW-ETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGL 616

Query: 233 VEEANKTFGEMVER 246
            +EA +   E+  R
Sbjct: 617 AKEAQELLSELCSR 630



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 96/243 (39%), Gaps = 10/243 (4%)

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           VVA N++++  CR   Q + A      V   V P+  +F  ++ G    G + +A +   
Sbjct: 79  VVAYNAMVAGYCRA-GQLAAARRLAAAVP--VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM   F+        Y   L    R      +++ L  M  + C       +  L+ + +
Sbjct: 136 EM--SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICE 193

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                 AV L    + F G   D ++YN + + L   KR  +VE+   EM++ +  P  +
Sbjct: 194 QGCVDEAVGLLR-KLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIV 252

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
              T I  L      E   E+   + E+G  P       ++ G+   G L      A E+
Sbjct: 253 TFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHL----EVANEI 308

Query: 422 LNR 424
           LNR
Sbjct: 309 LNR 311


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 126/265 (47%), Gaps = 10/265 (3%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           N++VD L +     +    +R ++ DGV   ++ TF S+   YC AGK ++A+  ++ M 
Sbjct: 288 NIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMV 347

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G+  + V  N L++   +  +  S A+E   ++ ++   PD  +F+ L++G+ + G +
Sbjct: 348 ASGIMPNTVTYNVLINGYGKVGDLGS-AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQL 406

Query: 234 EEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK-GENCFPTLKF 291
           ++A + + +M + R + N   V  +   + +L +  + DEA++ L  +    +  P    
Sbjct: 407 DDALRIWSDMAQHRIQPN---VYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFI 463

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +D+L K      A  L    M   G  PD  TY ++        R+ E   FFHEM
Sbjct: 464 YNPVIDVLCKCGKVDEA-NLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEM 522

Query: 352 IKNEWQPTPLNCATAITMLLDADEP 376
           ++    P  +     I+ LL A  P
Sbjct: 523 VEAGCSPDSITVNCFISCLLKAGMP 547



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 15/205 (7%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFD 171
           +N++++  GK G    + +AV V ++   L  P    TF+S+ D YC  G+ D+A+  + 
Sbjct: 358 YNVLINGYGKVG---DLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWS 414

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR--VKKIVDPDGDSFAILLEGWEK 229
            M+ H ++ +V   + ++ ++C+Q N++  A+  LN   ++  + P    +  +++   K
Sbjct: 415 DMAQHRIQPNVYTFSIIIHSLCKQ-NRSDEAIRLLNELNLRPDIAPQAFIYNPVIDVLCK 473

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-- 287
            G V+EAN     M E+    P+    Y   +I      ++ EA+ F   M    C P  
Sbjct: 474 CGKVDEANLIRKGMEEK-GCRPDK-YTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDS 531

Query: 288 -TLKFFSNALDILVKLNDSTHAVQL 311
            T+  F + L      N+  H ++L
Sbjct: 532 ITVNCFISCLLKAGMPNEVDHVMRL 556



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/325 (19%), Positives = 128/325 (39%), Gaps = 55/325 (16%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQM------WNAVRVMKEDGVLSLPTFASIFDSYCGAG 161
           G R+  YA+N ++  L   GR   +      W   R+   D    + +F  +    C  G
Sbjct: 208 GCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPD----VWSFNVVIKGVCRVG 263

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDS 219
           +  +A+   + M+  G   D V  N ++  +CR  N+ SR  E L R+++  +  P+  +
Sbjct: 264 QVQKALELVERMNEFGCSPDTVTHNIIVDGLCR-TNEVSRGHEVLRRLQRDGVCMPNVVT 322

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  ++ G+ K G +E+A   + +MV                                   
Sbjct: 323 FTSVISGYCKAGKLEDAMAVYNDMV----------------------------------- 347

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
                  P    ++  ++   K+ D   AV+++  M       PD +T++ + +   +  
Sbjct: 348 --ASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCP-PDVVTFSSLIDGYCRCG 404

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI-LENGILPLEASA 398
           ++ +  + + +M ++  QP     +  I  L   +  + AI + N + L   I P     
Sbjct: 405 QLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIY 464

Query: 399 NELLVGLRNLGRLSD---VRRFAEE 420
           N ++  L   G++ +   +R+  EE
Sbjct: 465 NPVIDVLCKCGKVDEANLIRKGMEE 489



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 112/271 (41%), Gaps = 15/271 (5%)

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEG 231
           S H  +Q +V        +CR   Q   AL+  +++       PD    + L+       
Sbjct: 141 SAHSCQQIIVV-------LCRSGRQAD-ALQLFDQMTTHYGYSPDARFLSFLVSSCTC-A 191

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLI-RGKQVDEALKFLRVMKGENCFPTLK 290
           N+ +A+ T       F    E   AY   + +LI RG+  D    F R ++     P + 
Sbjct: 192 NLLDASATLLSKASEFGCRVE-AYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVW 250

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            F+  +  + ++     A++L + M  F G  PD++T+N+I + L +   V    +    
Sbjct: 251 SFNVVIKGVCRVGQVQKALELVERMNEF-GCSPDTVTHNIIVDGLCRTNEVSRGHEVLRR 309

Query: 351 MIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           + ++    P  +   + I+    A + E A+ ++N ++ +GI+P   + N L+ G   +G
Sbjct: 310 LQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVG 369

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
            L       ++M   R     VT   L   +
Sbjct: 370 DLGSAVEVYQQMTRLRCPPDVVTFSSLIDGY 400



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/293 (19%), Positives = 118/293 (40%), Gaps = 20/293 (6%)

Query: 158 CGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSAICRQENQT-------SRALEFLNRV 209
           C +G+  +A+  FD M+ H G   D   ++ L+S+ C   N         S+A EF  RV
Sbjct: 153 CRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSS-CTCANLLDASATLLSKASEFGCRV 211

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           +        ++  L+      G V +    F   ++   ++P+ V ++   +  + R  Q
Sbjct: 212 EAY------AYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPD-VWSFNVVIKGVCRVGQ 264

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           V +AL+ +  M    C P     +  +D L + N+ +   ++   +       P+ +T+ 
Sbjct: 265 VQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFT 324

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
            +     K  ++ +    +++M+ +   P  +     I       +   A+E++  +   
Sbjct: 325 SVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRL 384

Query: 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKK 438
              P   + + L+ G    G+L D  R   +M   RI      + + +H L K
Sbjct: 385 RCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 437


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/351 (19%), Positives = 164/351 (46%), Gaps = 8/351 (2%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           T  ++ + L  + DS +    F ++   G  +  Y  +++++ L K+G+       ++ +
Sbjct: 307 TYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSL 366

Query: 140 KEDGVLSLPT---FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
              G++  PT   + ++ + YC  G+ + A  +F  M    ++ D +  N+L++ +C+ E
Sbjct: 367 VNAGLV--PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAE 424

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
             T+     +      V+P  ++F  L++ + + G +E+      EM E     P +V++
Sbjct: 425 RITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQEN-GLKP-NVVS 482

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           Y + +    +  ++ EA+  L  M  ++  P  + ++  +D  V+   +  A  L +  M
Sbjct: 483 YGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVE-KM 541

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
             +G  P  +TYN++ + L    ++ E E+  + +  +   P  ++  T I+        
Sbjct: 542 KSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNI 601

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           + A+++   + + GI     + ++L+ GL   GRL+++    ++M+   ++
Sbjct: 602 DKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVV 652



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 114/285 (40%), Gaps = 10/285 (3%)

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G++ +   +F +++  G   D  A N  + A C        A+  L R+ +   P  ++F
Sbjct: 143 GRHADVRRAFGILASAGARPDTFAWNKAVQA-CVAAGDLGEAVGMLRRMGRDGAPPPNAF 201

Query: 221 A--ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +  +++ G  + G   +A + F EM ER    P H+  Y T +   I+G  ++   +   
Sbjct: 202 SYNVVIAGMWRAGRGGDAVEVFDEMTERAVL-PNHI-TYNTMIDGHIKGGDLEAGFRLRD 259

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M      P    ++  L  L +         L D  M      PD  TY+++F+ L +N
Sbjct: 260 QMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLD-EMASQKMVPDGFTYSILFDGLSRN 318

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
                +   F + +KN        C+  +  L    +  IA E+   ++  G++P     
Sbjct: 319 GDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIY 378

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKA 439
           N L+ G    G L        +M +R I    + Y   ++ L KA
Sbjct: 379 NTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKA 423



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 139/343 (40%), Gaps = 24/343 (6%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWN-----AVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           G + +   +N+++  L + GR  +        A + M  DG     T++ +FD     G 
Sbjct: 265 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGF----TYSILFDGLSRNGD 320

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFA 221
               +  F     +GV       + LL+ +C+ + + S A E L   V   + P    + 
Sbjct: 321 SKAMLSLFGKYLKNGVTIGDYTCSILLNGLCK-DGKVSIAEEVLQSLVNAGLVPTRVIYN 379

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+ G+ + G +E A  TFG+M  R    P+H+  Y   +  L + +++  A   L  M+
Sbjct: 380 TLINGYCQTGELEGAFSTFGQMKSR-HIKPDHI-TYNALINGLCKAERITNAQDLLMEMQ 437

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF-----HGAFPDSLTYNMIFECLI 336
                PT++ F+  +D   +        QL    +V      +G  P+ ++Y  I     
Sbjct: 438 DNGVNPTVETFNTLIDAYGRTG------QLEKCFIVLSEMQENGLKPNVVSYGSIVNAFC 491

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           KN ++ E      +M   +  P        I   ++    + A  +   +  NGI P   
Sbjct: 492 KNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIV 551

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
           + N L+ GL N  ++S+       + N R++   V+ + L  A
Sbjct: 552 TYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISA 594



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/397 (19%), Positives = 154/397 (38%), Gaps = 43/397 (10%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           AV   R  GR     P  +++N+++  + + GR          M E  VL +  T+ ++ 
Sbjct: 183 AVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMI 242

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKI 212
           D +   G  +      D M  HG++ + +  N LLS +CR  +  +TS  L+ +   K +
Sbjct: 243 DGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMV 302

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA---------------- 256
             PDG +++IL +G  + G+ +     FG+ ++      ++  +                
Sbjct: 303 --PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAE 360

Query: 257 -----------------YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
                            Y T +    +  +++ A      MK  +  P    ++  ++ L
Sbjct: 361 EVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGL 420

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            K    T+A  L  + M  +G  P   T+N + +   +  ++ +      EM +N  +P 
Sbjct: 421 CKAERITNAQDLL-MEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPN 479

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
            ++  + +       +   A+ I + +    +LP     N ++      G         E
Sbjct: 480 VVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVE 539

Query: 420 EMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 454
           +M +  I    VT + L K   N+S+     +I +SL
Sbjct: 540 KMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSL 576



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/303 (18%), Positives = 136/303 (44%), Gaps = 15/303 (4%)

Query: 65  SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSP--YAWNLMV 120
           ++++  +L   G++PT  +++  L   Y         F   G  + + + P    +N ++
Sbjct: 359 AEEVLQSLVNAGLVPT-RVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALI 417

Query: 121 DVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
           + L K  R     + +  M+++GV  ++ TF ++ D+Y   G+ ++  +    M  +G++
Sbjct: 418 NGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLK 477

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANK 238
            +VV+  S+++A C+   +   A+  L+ +  K V P+   +  +++ + + G  ++A  
Sbjct: 478 PNVVSYGSIVNAFCKN-GKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI 536

Query: 239 TFGEMVERFEWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
               +VE+ + N     ++ Y   +  L    Q+ EA + +  +      P    ++  +
Sbjct: 537 ----LVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 592

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
                  +   A+ L   M  + G      TY+ +   L    R++E+E  + +M++N  
Sbjct: 593 SACCYRGNIDKALDLQQRMHKY-GIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNV 651

Query: 357 QPT 359
            P+
Sbjct: 652 VPS 654


>gi|240256396|ref|NP_199195.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635652|sp|P0C8R0.1|PP416_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g43820
 gi|332007631|gb|AED95014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 546

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 157/357 (43%), Gaps = 7/357 (1%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGK 125
           I+ +L+  GI  + D+V +VL     S  + V FF WA R  G      ++++++  LG+
Sbjct: 104 IQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALGR 163

Query: 126 NGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
              F  M + ++ M  +GV   L       DS+        A+  F+     GV+    +
Sbjct: 164 RKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCSTES 223

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
            N+LL  +C + +  S A    N  K  +  D  S+ I++ GW K G VEE  K   EMV
Sbjct: 224 FNALLRCLC-ERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMV 282

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           E   + P+  L+Y   +  L R  +++++++    +K +   P    ++  +   +   D
Sbjct: 283 ES-GFGPD-CLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISARD 340

Query: 305 STHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
              +++ +   M+     P+  TY+ +   LIK ++V +  + F EM+     PT     
Sbjct: 341 FDESMRYYR-RMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVT 399

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           + +  L     P  A+ I+    + G    E++   LL  L   G+   +    +EM
Sbjct: 400 SFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEM 456



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 5/140 (3%)

Query: 76  GIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQM 132
           G++PT  LV   L+   SY  P +A+  ++ + + G R+S  A+ L++  L + G+   +
Sbjct: 390 GVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGML 449

Query: 133 WNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            N    M+E G  S +  +  I D  C  G  + AV+  +     G   +   V S LS+
Sbjct: 450 LNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRF-VYSRLSS 508

Query: 192 ICRQENQTSRALEFLNRVKK 211
                N+T  A +   ++KK
Sbjct: 509 KLMASNKTELAYKLFLKIKK 528


>gi|357442157|ref|XP_003591356.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480404|gb|AES61607.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/401 (21%), Positives = 171/401 (42%), Gaps = 43/401 (10%)

Query: 63  ASSDDIESALACTGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAGR--GQRLSPYAWN 117
           +S + ++ +L  T I  + +L+ +VL+     + +P+  ++FFR+ GR  G   + Y+ +
Sbjct: 39  SSPETLKQSLKSTQIFLSNELIDQVLKRVRFGHANPNQTLEFFRYTGRRKGFYHTAYSLD 98

Query: 118 LMVDVLGKNGRFEQMWNAV--RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
            M+ +LG++  F+ +W  +     K+  V++  T   +           + V +F     
Sbjct: 99  TMLYILGRSRMFDHVWELLIEARRKDQNVITPRTVMVVLGRVAKVCSVRQTVETFRKFKK 158

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE------- 228
              +  V   N+LL  +C QE   + A    + +K    P+  +F ILL GW+       
Sbjct: 159 IVPDYGVNCFNALLRTLC-QEKSMTDARNVYHSLKHNFRPNLQTFNILLSGWKNVEDAEL 217

Query: 229 -------------------------KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
                                    K   +E+A K F EM E+ + +P+ V+ Y + +  
Sbjct: 218 FVNEMKEMGVEPDVVTYNSLVDVYCKGREIEKAYKVFDEMREK-DLSPD-VITYTSVIGG 275

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L    Q D+A   L+ MK    +P +  ++ A+           A +L D  MV  G  P
Sbjct: 276 LGLVGQPDKARDVLKEMKEYGVYPDVPAYNAAIRNYCIAKRLGIAFELVD-EMVNKGLSP 334

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           ++ TYN+ F     +  +      +  M+     P   +C   I +    ++ E+A+++W
Sbjct: 335 NATTYNLFFRVFYWSNDLQSSWNLYKRMMGEGCLPYTQSCMFLIRLFKRHEKMEMALQLW 394

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             ++E G       ++ L   L ++G+L +  +   EM+ +
Sbjct: 395 GEMVEKGFGSYTLVSDVLFDMLCDMGKLMEAEKCFLEMIEK 435


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 11/291 (3%)

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS--MHGVEQDVVAVNSLLSAICR 194
           R+ +E  VL+   F  IF +   A    EAV  F  M+  +H  +Q V + NS+L+ I  
Sbjct: 114 RMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMANDLH-CKQTVKSFNSVLNVII- 171

Query: 195 QENQTSRALEFLNRV----KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           QE   S A +F   V     K   P+  ++ ++++   K G ++ A  TF EM  +   N
Sbjct: 172 QEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLK-NCN 230

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ V  Y T +  L + ++VDEA+  L  M+ E C P    F+  +D L K  D + A +
Sbjct: 231 PD-VFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAK 289

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           L D M +  G  P+ +TYN +   L    ++ +      +M+ ++  P  +   T I  L
Sbjct: 290 LVDNMFL-KGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGL 348

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           +     E  + I   + E G    E   + L+ GL   G+  +  R  +EM
Sbjct: 349 VKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEM 399



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 138/323 (42%), Gaps = 4/323 (1%)

Query: 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVLSLPTFASIFDSYCGA 160
           F    +G + +   +NL++  L K G+ ++  +  R M  ++    + T++++ +  C  
Sbjct: 187 FGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKE 246

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
            + DEAV   D M   G   + V  N L+ A+ +  + +  A    N   K   P+  ++
Sbjct: 247 RRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTY 306

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ G   +G +++A     +MV   +  P  V  Y T +  L++ ++ ++ +  L  M
Sbjct: 307 NTLIHGLCLKGKLDKALSLLEKMVSS-KCVPNQV-TYGTIINGLVKQRRAEDGVHILMSM 364

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
           +          +S+ +  L K   S +AV+LW   M   G  P+ + Y    + L ++++
Sbjct: 365 EERGQKANEYIYSSLISGLFKEGKSENAVRLWK-EMAEKGCKPNVVVYGAFIDGLCRDEK 423

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
             E E    EM+   + P     ++ +       + + AI +W  ++   +       + 
Sbjct: 424 PDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSV 483

Query: 401 LLVGLRNLGRLSDVRRFAEEMLN 423
           LL GL   GRL +       ML 
Sbjct: 484 LLNGLCESGRLREALTVWTHMLG 506



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/310 (19%), Positives = 135/310 (43%), Gaps = 6/310 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDV 172
           + ++ +++ L K  R ++    +  M+ +G L  P TF  + D+    G    A    D 
Sbjct: 234 FTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDN 293

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M + G   + V  N+L+  +C +  +  +AL  L + V     P+  ++  ++ G  K+ 
Sbjct: 294 MFLKGCVPNEVTYNTLIHGLCLK-GKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQR 352

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             E+       M ER +   E++  Y + +  L +  + + A++  + M  + C P +  
Sbjct: 353 RAEDGVHILMSMEERGQKANEYI--YSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVV 410

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +   +D L +      A  +   M+   G  P++ TY+ + +   K     +    + EM
Sbjct: 411 YGAFIDGLCRDEKPDEAEDILQEMLS-KGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEM 469

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +  + +   + C+  +  L ++     A+ +W ++L  G+ P   + + ++ GL ++G +
Sbjct: 470 MSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSV 529

Query: 412 SDVRRFAEEM 421
               +   EM
Sbjct: 530 DKGLKLFYEM 539



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 130/312 (41%), Gaps = 18/312 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVM 173
            +  +++ L K  R E   + +  M+E G  +    ++S+       GK + AV  +  M
Sbjct: 340 TYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEM 399

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +  G + +VV   + +  +CR E            + K   P+  +++ L++G+ K+G+ 
Sbjct: 400 AEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDS 459

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A   + EM+ +   +  +V+     L  L    ++ EAL     M GE   P +  +S
Sbjct: 460 QKAILVWKEMMSQDMRH--NVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYS 517

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFH-GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           + +  L  +      ++L+  M      + PD +TYN++F  L +   +       + M+
Sbjct: 518 SMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSML 577

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P  L C   +  L +   P           ++G L L+    EL+V L    R  
Sbjct: 578 DEGCDPDSLTCNIFLETLRERINPP----------QDGRLFLD----ELVVRLLKRERKL 623

Query: 413 DVRRFAEEMLNR 424
              R  EEML R
Sbjct: 624 SALRIVEEMLLR 635



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 99/256 (38%), Gaps = 10/256 (3%)

Query: 199 TSRALEFLNRVKKIVDPDGDS-----FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           TSR   F+++V   +  +G       F ++ +   K     EA   F  M        + 
Sbjct: 101 TSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMANDLHCK-QT 159

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCF---PTLKFFSNALDILVKLNDSTHAVQ 310
           V ++ + L  +I+      A KF   + G N     P L  ++  +  L KL     AV 
Sbjct: 160 VKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVD 219

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
            +   M      PD  TY+ +   L K +RV E      EM      P P+     I  L
Sbjct: 220 TFR-EMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDAL 278

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
               +   A ++ + +   G +P E + N L+ GL   G+L       E+M++ + +  +
Sbjct: 279 SKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQ 338

Query: 431 VTMHKLKKAFYNESRS 446
           VT   +      + R+
Sbjct: 339 VTYGTIINGLVKQRRA 354



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 42/220 (19%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-----------------DGVLS--- 146
           RGQ+ + Y ++ ++  L K G+ E   NAVR+ KE                 DG+     
Sbjct: 367 RGQKANEYIYSSLISGLFKEGKSE---NAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEK 423

Query: 147 ----------------LP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
                           LP   T++S+   +   G   +A++ +  M    +  +VV  + 
Sbjct: 424 PDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSV 483

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           LL+ +C           + + + + + PD  +++ +++G    G+V++  K F EM  + 
Sbjct: 484 LLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQE 543

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
             +   V+ Y      L R   +  A+  L  M  E C P
Sbjct: 544 PKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDP 583


>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
          Length = 796

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 156/353 (44%), Gaps = 15/353 (4%)

Query: 98  AVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A++F R A  R  R+    ++ +V    + GR ++    V  M   G +  + T+ S+ +
Sbjct: 392 ALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVIN 451

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD- 214
             C   K D+A      M  HG + + V+  +LL+ +C+  N    A E +N  ++  D 
Sbjct: 452 GLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLE-AREMMNMSEE--DW 508

Query: 215 --PDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVD 271
             P+  ++++L+ G+ +EG   EA     EM+++ F   P  +      + +L + ++VD
Sbjct: 509 WIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEI---NLLIQSLCQEEKVD 565

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           EA +F+       C   +  F+  +    + +D   A+ L D M +     PD +TY  I
Sbjct: 566 EAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYL-SNKHPDVVTYTTI 624

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
            + L K  R+ E  K   +M++    PTP+   T I         E  +++   +L    
Sbjct: 625 IDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQ- 683

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
                + N+++  L + G L    +   ++L     I   T H L +++ ++ 
Sbjct: 684 -ECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHMLIESYLSKG 735



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 157/374 (41%), Gaps = 14/374 (3%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS------PYAWNLMVDVLGKNGRFEQMWN 134
           P  V  VLQL  D    A+ FF WA R  R        P A+  ++    + G+      
Sbjct: 195 PRQVCAVLQLQTDE-RVALRFFYWADRQWRYRHDPIRRPEAFGYVMVSYSRAGKLRNAMR 253

Query: 135 AVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
            + +M++ G+   L    +         + D+AV   + M +  +E +V+  N L+   C
Sbjct: 254 VLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYC 313

Query: 194 RQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
              ++   A+E +  +  K   PD  S+  ++    KE  ++E      +M++     P+
Sbjct: 314 -DLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPD 372

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF-FSNALDILVKLNDSTHAVQL 311
            V  Y TF+  L +    DEAL+FLR  + E  F   K  +S  +    +      A ++
Sbjct: 373 QV-TYNTFVHMLSKHGHGDEALEFLREAE-ERRFRVDKVGYSAIVHSFCREGRMDKAKEI 430

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
            + M    G  PD +TY  +   L + ++V + +K   +M K+  +P  ++    +  L 
Sbjct: 431 VNEMFS-KGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLC 489

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 431
                  A E+ N   E+  +P   + + L+ G R  G+ S+      EM+ +      V
Sbjct: 490 KNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPV 549

Query: 432 TMHKLKKAFYNESR 445
            ++ L ++   E +
Sbjct: 550 EINLLIQSLCQEEK 563


>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 628

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 158/402 (39%), Gaps = 43/402 (10%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLM 119
           H+    +E AL  +G++  P L   VL    D+ + A  F+ WA +  G RL   A+  M
Sbjct: 77  HSRVPKLELALRESGVVVRPGLTERVLNRCGDAGNLAYRFYSWASKQSGHRLDHDAYKAM 136

Query: 120 VDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           + VL +  +F  +W  +  M+++   +++   F  +   +  A    +AV   D M  +G
Sbjct: 137 IKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVQVLDEMPNYG 196

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
            E D      LL A+ R+      A      ++    P    F  LL GW KEG + EA 
Sbjct: 197 CEPDEYVFGCLLDAL-RKNGSVKEAASLFEELRYRWKPSVKHFTSLLYGWCKEGKLMEAK 255

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
               +M +     P+ ++ Y   L    +  ++ +A   L+ M+ + C P    ++  + 
Sbjct: 256 HVLVQMKDA-GIEPD-IVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQ 313

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
            L K      A +++ + M  +G   D +TY+ +     K  ++    +   EMI+    
Sbjct: 314 SLCKHERLEEATRVF-VEMQRNGCQADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGHF 372

Query: 358 PT----------------------------PLNCA-------TAITMLLDADEPEIAIEI 382
           P                              + CA       T I +     E +  + +
Sbjct: 373 PNQVIYQHIMVAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGVRL 432

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           WN +  +G+ P   +   ++ G    G L +   + +EM+ R
Sbjct: 433 WNEMESSGLSPSIDTFVIMINGFLEQGCLVEACEYFKEMVGR 474


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 9/247 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++D L   G+     + +  M+ +G   S  T+ +I D+ C   + +EA   FD M 
Sbjct: 445 YNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMD 504

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             G+ +  V  N+L+  +C+ + +   A E + + VK+ + P+  ++  +L  + K+GN+
Sbjct: 505 AQGISRSAVTFNTLIDGLCKAK-RIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNI 563

Query: 234 EEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++A      M    FE +   V+ Y T +  L +  +   ALK LR M+ +   PT K +
Sbjct: 564 KKAADILETMTANGFEID---VVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAY 620

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR-VHEVEKFFHEM 351
           +  +  L + N+   A+ L+  M    G  PD+LTY ++F  L +    + E   F  EM
Sbjct: 621 NPVIQSLFRRNNLRDALNLFREMTEV-GEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEM 679

Query: 352 IKNEWQP 358
           +   + P
Sbjct: 680 VNKGFMP 686



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 93/438 (21%), Positives = 167/438 (38%), Gaps = 79/438 (18%)

Query: 95  PSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFA 151
           P +A+     A   +  +P +  +  +V  LG  G F+ M   VR M+ +G  +      
Sbjct: 69  PEAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVR 128

Query: 152 SIFDSYCGAGKYDEAV--------------------------------------MSFDVM 173
           S  +SY    ++D+AV                                        ++ M
Sbjct: 129 SFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEM 188

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +  G++ DVV +N+L+ A+CR     +  L         V PD  +F  L++G+ +EG++
Sbjct: 189 TGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSI 248

Query: 234 EEANKTFGEMVE---------------------RFE-------------WNPEHVLAYET 259
           E A +   +M+E                     R E             + P+ V  Y T
Sbjct: 249 EAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQV-TYNT 307

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH 319
           F+  L +   V  ALK + +M  E   P +  ++  ++ L K  +   A  + +  MV  
Sbjct: 308 FVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVN-QMVDR 366

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
           G  PD+ T+N +   L    R+ E      E+      P        I  L    +P + 
Sbjct: 367 GCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLG 426

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
           I ++  +  +G  P E + N L+  L ++G+L +      EM +       VT + +  A
Sbjct: 427 IRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDA 486

Query: 440 FYNESR--SMRDIFDSLE 455
              + R     ++FD ++
Sbjct: 487 LCKKMRIEEAEEVFDQMD 504



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 124/275 (45%), Gaps = 5/275 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           T   + + YC  G+ ++A+         G E D V  N+ +  +C Q    S AL+ ++ 
Sbjct: 269 TVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLC-QNGHVSHALKVMDL 327

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +++  DPD  ++  ++    K G ++EA     +MV+R    P+    + T ++ L   
Sbjct: 328 MLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDR-GCLPD-TTTFNTLIVALSSQ 385

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +++EAL   R +  +   P +  F+  ++ L K+ D    ++L++ M    G  PD +T
Sbjct: 386 NRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKS-SGCTPDEVT 444

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN++ + L    ++       +EM  N    + +   T I  L      E A E+++ + 
Sbjct: 445 YNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMD 504

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
             GI     + N L+ GL    R+ D     E+M+
Sbjct: 505 AQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMV 539



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 124/297 (41%), Gaps = 6/297 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  V  L +NG        + +M ++G    + T+ ++ +     G+ DEA    + M 
Sbjct: 305 YNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMV 364

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D    N+L+ A+  Q N+   AL+    +  K + PD  +F IL+    K G+ 
Sbjct: 365 DRGCLPDTTTFNTLIVALSSQ-NRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDP 423

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
               + F EM +     P+ V  Y   +  L    ++  AL  L  M+   C  +   ++
Sbjct: 424 HLGIRLFEEM-KSSGCTPDEV-TYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYN 481

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D L K      A +++D  M   G    ++T+N + + L K KR+ +  +   +M+K
Sbjct: 482 TIIDALCKKMRIEEAEEVFD-QMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVK 540

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
              QP  +   + +T        + A +I   +  NG      +   L+ GL   GR
Sbjct: 541 EGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGR 597



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 127/321 (39%), Gaps = 7/321 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG       +N ++  L    R E+  +  R +   G+   + TF  + ++ C  G    
Sbjct: 366 RGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHL 425

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-SFAILL 224
            +  F+ M   G   D V  N L+  +C    +   AL+ LN ++    P    ++  ++
Sbjct: 426 GIRLFEEMKSSGCTPDEVTYNILIDHLCSM-GKLGNALDLLNEMESNGCPRSTVTYNTII 484

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +   K+  +EEA + F +M    +      + + T +  L + K++D+A + +  M  E 
Sbjct: 485 DALCKKMRIEEAEEVFDQM--DAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEG 542

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P    +++ L    K  +   A  + + M   +G   D +TY  +   L K  R    
Sbjct: 543 LQPNNITYNSILTHYCKQGNIKKAADILETMTA-NGFEIDVVTYGTLINGLCKAGRTQVA 601

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            K    M     +PTP      I  L   +    A+ ++  + E G  P   +   +   
Sbjct: 602 LKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRS 661

Query: 405 L-RNLGRLSDVRRFAEEMLNR 424
           L R  G + +   F  EM+N+
Sbjct: 662 LCRGGGPIKEAFDFLVEMVNK 682


>gi|356570295|ref|XP_003553325.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Glycine max]
          Length = 516

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 164/384 (42%), Gaps = 20/384 (5%)

Query: 49  ISSSARIICEILAHASS--DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG 106
           +S   + I +I+    S     +  L    +  +  LV EVL  + +   +A  FF WAG
Sbjct: 28  LSQDVKTILDIMHEMGSGPSQTKQKLEHCSVDLSAKLVVEVLLRTRNDWEAAFTFFLWAG 87

Query: 107 R--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED----GVLSLPTFASIFDSYCGA 160
           +  G   S   ++ M+ +LGK  +F+  WN +  M+       +++  T   +   YC  
Sbjct: 88  KQPGYAHSIREYHSMISILGKMRKFDTAWNLIEEMRRGRTGPSLVTPQTLLIMIRKYCAV 147

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDS 219
                A+ +F        +  +   +SLLSA+CR +N Q +  L F N  K +   D  S
Sbjct: 148 HDVARAINTFYAYKQFNFQVGLEEFHSLLSALCRYKNVQDAEHLLFCN--KNLFPLDTKS 205

Query: 220 FAILLEGW-EKEGNVEEANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVDEALKFL 277
           F I+L GW     +   A + + EM +R     +H V++Y + +    +  ++ + L+  
Sbjct: 206 FNIILNGWCNLIVSTSHAERIWHEMSKR---RIQHDVVSYGSIISCYSKSSKLYKVLRMF 262

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             MK     P  K ++  +  L K      AV L   +   +   P+ +TYN + + L K
Sbjct: 263 DEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTLED-NDVTPNVVTYNSLIKPLCK 321

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             +V E ++ F+E++K    PT         +L   +E     E+ + + E G  P   +
Sbjct: 322 AGKVDEAKQLFYEILKRHLSPTIQTFHAFFRILRTKEE---VFELLDKMKELGCYPTIET 378

Query: 398 ANELLVGLRNLGRLSDVRRFAEEM 421
              L+       +L DV +  + M
Sbjct: 379 YIMLMRKFCRWRQLDDVFKMWDAM 402



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 106/234 (45%), Gaps = 14/234 (5%)

Query: 130 EQMWNAV--RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           E++W+ +  R ++ D V    ++ SI   Y  + K  + +  FD M    +  D    N+
Sbjct: 224 ERIWHEMSKRRIQHDVV----SYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDRKVYNA 279

Query: 188 LLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           ++ A+ +       A+  +  ++   V P+  ++  L++   K G V+EA + F E+++R
Sbjct: 280 VIYALAKG-RLVKEAVNLIGTLEDNDVTPNVVTYNSLIKPLCKAGKVDEAKQLFYEILKR 338

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
              +P  +  +  F   ++R K  +E  + L  MK   C+PT++ +   +    +     
Sbjct: 339 -HLSPT-IQTFHAFF-RILRTK--EEVFELLDKMKELGCYPTIETYIMLMRKFCRWRQLD 393

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
              ++WD M    G   D  +Y ++   L  N ++ E   ++ EM +  + P P
Sbjct: 394 DVFKMWDAMRE-DGIGHDRSSYIVLIHGLFLNGKLEEAHTYYAEMQEKGFLPEP 446


>gi|255660888|gb|ACU25613.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 481

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 134/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  +   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-SSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNXLFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPT 289



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVER------TIKSYNXL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284



 Score = 38.5 bits (88), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 74/175 (42%), Gaps = 6/175 (3%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + + +SP    +N M++   +  + E+       MK   +  ++ T+ ++   Y    + 
Sbjct: 177 KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQV 236

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS-FAI 222
           D+A+   + M   G++ + +  ++LL  +C  E  +   +     + K + P  +S F  
Sbjct: 237 DDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMR 296

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
           L+    K GN++ A      M+ R    P     Y   +    +  Q D+A+K L
Sbjct: 297 LISSHCKSGNLDAAADVLKAMI-RLSV-PTEAGHYGXLIENFCKXGQYDKAVKLL 349


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 106/494 (21%), Positives = 191/494 (38%), Gaps = 75/494 (15%)

Query: 19  SSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGII 78
           S++ +T++P S +P+ P+    PT       + S R     ++       +S++      
Sbjct: 58  SATKSTSTPLSQSPNFPSLCSLPTSKSELASNFSGRRSTRFVSKFHFGRPKSSMTTRHSA 117

Query: 79  PTPDLVHEVLQLSYDSPS--------------------------------SAVDFFRWA- 105
              +++H+VLQ   D  S                                 A+  F +A 
Sbjct: 118 IAEEVLHQVLQFGKDDASLDNILLNFESKLCGSEDYTFLLRELGNRGECWKAIRCFDFAL 177

Query: 106 ---GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
              GR       A + M+  LG+ G+ E           +G   ++  F+++  +Y  +G
Sbjct: 178 VREGRKNERGKLA-SAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSG 236

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSF 220
            +DEA+  F+ M + G++ ++V  N+++ A  +   +  R +E F   ++  V PD  ++
Sbjct: 237 YFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITY 296

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             LL    + G  E A   F EM++R     + V  Y T L  + +G Q+D A + +  M
Sbjct: 297 NSLLAVCSRGGLWEAARNLFNEMIDR--GIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEM 354

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH------------------GAF 322
            G+   P +  +S   D   K      A+ L++ M                      G F
Sbjct: 355 PGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRF 414

Query: 323 PDSL----------------TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            D+L                TYN + +   K  + +EV + F EM K+   P  L  +T 
Sbjct: 415 EDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTL 474

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           I +       E A+E++    + G+       +EL+  L   G +       +EM    I
Sbjct: 475 IDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGI 534

Query: 427 LIYEVTMHKLKKAF 440
               VT + +  AF
Sbjct: 535 RPNVVTYNSIIDAF 548



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 1/141 (0%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D  GK G+F ++    + MK+D V  +L T++++ D Y     Y+EA+  F    
Sbjct: 436 YNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFK 495

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G++ DVV  + L++A+C+     S  L      K+ + P+  ++  +++ + +    E
Sbjct: 496 QAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAE 555

Query: 235 EANKTFGEMVERFEWNPEHVL 255
                 G   ER   +P  +L
Sbjct: 556 FLVDGVGASNERQSESPTFML 576



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 8/187 (4%)

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
           TL R  +V+ A         E    T+  FS  +    K      A+++++ M V  G  
Sbjct: 196 TLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKV-SGLK 254

Query: 323 PDSLTYNMIFECLIKN----KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
           P+ +TYN + +   K     KRV E+   F EM++N  QP  +   + + +       E 
Sbjct: 255 PNLVTYNAVIDACGKGGVEFKRVVEI---FEEMLRNGVQPDRITYNSLLAVCSRGGLWEA 311

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
           A  ++N +++ GI     + N LL  +   G++        EM  ++IL   VT   +  
Sbjct: 312 ARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMAD 371

Query: 439 AFYNESR 445
            +    R
Sbjct: 372 GYAKAGR 378


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 149/329 (45%), Gaps = 10/329 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L +NG FE++   +  M E G    +  +A+I D  C  G  + A    + M 
Sbjct: 254 FNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMP 313

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
            +G++ +VV  N++L  +C  E +   A E L+ + +K    D  +F IL++ + + G V
Sbjct: 314 SYGLKPNVVCYNTVLKGLCSAE-RWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLV 372

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +   +   +M+      P+ V+ Y T +    +   +DEA+  L+ M    C P    ++
Sbjct: 373 DRVIELLEQMLSH-GCMPD-VITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYT 430

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             L  L        A +L    M+  G  P+ +T+N +   L K   V +  +   +M+ 
Sbjct: 431 IVLKGLCSAGRWVDAEELMS-QMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLV 489

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           N   P  ++ +T I  L  A + E A+E+ N ++  GI P     + +   L   GR++ 
Sbjct: 490 NGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNK 549

Query: 414 VRRFAEEMLNRRI----LIYEVTMHKLKK 438
           V +  + + +  I    ++Y   +  L K
Sbjct: 550 VIQMFDNIKDTTIRSDAVLYNAVISSLCK 578



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/422 (20%), Positives = 164/422 (38%), Gaps = 46/422 (10%)

Query: 76  GIIPTPDLVHEVLQLSYDSPS---SAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G  P P + H +L+ +  S     S         +G  L     NL+++ + + G  ++ 
Sbjct: 141 GCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEA 200

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +R +   G    + ++ ++    C A ++ +     D M       ++V  N+L+  
Sbjct: 201 VGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 192 ICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +CR      R  E L ++ +    PD   +A +++G  KEG++E AN+    M   +   
Sbjct: 261 LCRN-GLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM-PSYGLK 318

Query: 251 PEHVLAYETFLITLIRGKQ-----------------------------------VDEALK 275
           P +V+ Y T L  L   ++                                   VD  ++
Sbjct: 319 P-NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIE 377

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
            L  M    C P +  ++  ++   K      AV L    M   G  P++++Y ++ + L
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLK-SMSSCGCKPNTVSYTIVLKGL 436

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
               R  + E+   +MI+    P P+   T I  L      E AIE+   +L NG  P  
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 496

Query: 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI--FDS 453
            S + ++ GL   G+  +       M+N+ I    +    +  A   E R  + I  FD+
Sbjct: 497 ISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDN 556

Query: 454 LE 455
           ++
Sbjct: 557 IK 558



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 109/249 (43%), Gaps = 4/249 (1%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
           L    +N++VD   +NG  +++   +  M   G +  + T+ ++ + +C  G  DEAVM 
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVML 413

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
              MS  G + + V+   +L  +C               +++   P+  +F  L+    K
Sbjct: 414 LKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK 473

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +G VE+A +   +M+     +P+ +++Y T +  L +  + +EAL+ L VM  +   P  
Sbjct: 474 KGLVEQAIELLKQMLVN-GCSPD-LISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNT 531

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             +S+    L +       +Q++D  +       D++ YN +   L K         FF 
Sbjct: 532 IIYSSIACALSREGRVNKVIQMFD-NIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFA 590

Query: 350 EMIKNEWQP 358
            M+ N   P
Sbjct: 591 YMVSNGCMP 599



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 71/134 (52%), Gaps = 3/134 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +++ ++D LGK G+ E+    + VM   G+  +   ++SI  +    G+ ++ +  FD +
Sbjct: 498 SYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNI 557

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGN 232
               +  D V  N+++S++C++  +T RA++F    V     P+  ++ +L++G   EG 
Sbjct: 558 KDTTIRSDAVLYNAVISSLCKRW-ETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGL 616

Query: 233 VEEANKTFGEMVER 246
            +EA +   E+  R
Sbjct: 617 AKEAQELLSELCSR 630



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 96/243 (39%), Gaps = 10/243 (4%)

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           VVA N++++  CR   Q + A      V   V P+  +F  ++ G    G + +A +   
Sbjct: 79  VVAYNAMVAGYCRA-GQLAAARRLAAAVP--VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM   F+        Y   L    R      +++ L  M  + C       +  L+ + +
Sbjct: 136 EM--SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICE 193

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                 AV L    + F G   D ++YN + + L   KR  +VE+   EM++ +  P  +
Sbjct: 194 QGCVDEAVGLLR-KLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIV 252

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
              T I  L      E   E+   + E+G  P       ++ G+   G L      A E+
Sbjct: 253 TFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHL----EVANEI 308

Query: 422 LNR 424
           LNR
Sbjct: 309 LNR 311


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 149/329 (45%), Gaps = 10/329 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L +NG FE++   +  M E G    +  +A+I D  C  G  + A    + M 
Sbjct: 254 FNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMP 313

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
            +G++ +VV  N++L  +C  E +   A E L+ + +K    D  +F IL++ + + G V
Sbjct: 314 SYGLKPNVVCYNTVLKGLCSAE-RWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLV 372

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +   +   +M+      P+ V+ Y T +    +   +DEA+  L+ M    C P    ++
Sbjct: 373 DRVIELLEQMLSH-GCMPD-VITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYT 430

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             L  L        A +L    M+  G  P+ +T+N +   L K   V +  +   +M+ 
Sbjct: 431 IVLKGLCSAGRWVDAEELMS-QMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLV 489

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           N   P  ++ +T I  L  A + E A+E+ N ++  GI P     + +   L   GR++ 
Sbjct: 490 NGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNK 549

Query: 414 VRRFAEEMLNRRI----LIYEVTMHKLKK 438
           V +  + + +  I    ++Y   +  L K
Sbjct: 550 VIQMFDNIKDTTIRSDAVLYNAVISSLCK 578



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/422 (20%), Positives = 164/422 (38%), Gaps = 46/422 (10%)

Query: 76  GIIPTPDLVHEVLQLSYDSPS---SAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G  P P + H +L+ +  S     S         +G  L     NL+++ + + G  ++ 
Sbjct: 141 GCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEA 200

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +R +   G    + ++ ++    C A ++ +     D M       ++V  N+L+  
Sbjct: 201 VGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 192 ICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +CR      R  E L ++ +    PD   +A +++G  KEG++E AN+    M   +   
Sbjct: 261 LCRN-GLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM-PSYGLK 318

Query: 251 PEHVLAYETFLITLIRGKQ-----------------------------------VDEALK 275
           P +V+ Y T L  L   ++                                   VD  ++
Sbjct: 319 P-NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIE 377

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
            L  M    C P +  ++  ++   K      AV L    M   G  P++++Y ++ + L
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLK-SMSSCGCKPNTVSYTIVLKGL 436

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
               R  + E+   +MI+    P P+   T I  L      E AIE+   +L NG  P  
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 496

Query: 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI--FDS 453
            S + ++ GL   G+  +       M+N+ I    +    +  A   E R  + I  FD+
Sbjct: 497 ISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDN 556

Query: 454 LE 455
           ++
Sbjct: 557 IK 558



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 109/249 (43%), Gaps = 4/249 (1%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
           L    +N++VD   +NG  +++   +  M   G +  + T+ ++ + +C  G  DEAVM 
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVML 413

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
              MS  G + + V+   +L  +C               +++   P+  +F  L+    K
Sbjct: 414 LKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK 473

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +G VE+A +   +M+     +P+ +++Y T +  L +  + +EAL+ L VM  +   P  
Sbjct: 474 KGLVEQAIELLKQMLVN-GCSPD-LISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNT 531

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             +S+    L +       +Q++D  +       D++ YN +   L K         FF 
Sbjct: 532 IIYSSIACALSREGRVNKVIQMFD-NIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFA 590

Query: 350 EMIKNEWQP 358
            M+ N   P
Sbjct: 591 YMVSNGCMP 599



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 71/134 (52%), Gaps = 3/134 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +++ ++D LGK G+ E+    + VM   G+  +   ++SI  +    G+ ++ +  FD +
Sbjct: 498 SYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNI 557

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGN 232
               +  D V  N+++S++C++  +T RA++F    V     P+  ++ +L++G   EG 
Sbjct: 558 KDTTIRSDAVLYNAVISSLCKRW-ETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGL 616

Query: 233 VEEANKTFGEMVER 246
            +EA +   E+  R
Sbjct: 617 AKEAQELLSELCSR 630



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 96/243 (39%), Gaps = 10/243 (4%)

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           VVA N++++  CR   Q + A      V   V P+  +F  ++ G    G + +A +   
Sbjct: 79  VVAYNAMVAGYCRA-GQLAAARRLAAAVP--VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM   F+        Y   L    R      +++ L  M  + C       +  L+ + +
Sbjct: 136 EM--SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICE 193

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                 AV L    + F G   D ++YN + + L   KR  +VE+   EM++ +  P  +
Sbjct: 194 QGCVDEAVGLLR-KLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIV 252

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
              T I  L      E   E+   + E+G  P       ++ G+   G L      A E+
Sbjct: 253 TFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHL----EVANEI 308

Query: 422 LNR 424
           LNR
Sbjct: 309 LNR 311


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/321 (18%), Positives = 149/321 (46%), Gaps = 4/321 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G  +  Y  +++++ L K+G+  +    + ++   G++ +   + ++ + YC       
Sbjct: 329 KGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQG 388

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   F+ M    +  D +  N+L++ +C+ E  T      +   K  VDP  ++F  L++
Sbjct: 389 AFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLID 448

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + + G +E+      +M ++      +V+++ + +    +  ++ EA+  L  M  ++ 
Sbjct: 449 AYGRAGQLEKCFTVLSDMQDK--GIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDV 506

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P  + +++ +D  ++   +  A  L +  M   G      TYN++ + L KN ++ E E
Sbjct: 507 VPNAQVYNSIIDAYIESGGTEQAFLLVE-KMKSSGVSASIFTYNLLLKGLCKNSQIDEAE 565

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           +  + +     +P  ++  T I+   +  + + A+E+   + +  I P   + + LL  L
Sbjct: 566 ELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSAL 625

Query: 406 RNLGRLSDVRRFAEEMLNRRI 426
            + GR+ D+    + M+++ +
Sbjct: 626 GSAGRVHDMECLYQHMVHKNV 646



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/336 (20%), Positives = 146/336 (43%), Gaps = 11/336 (3%)

Query: 98  AVDFFRWAGRGQRLSP---YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           A+   R  GR +   P   +++N+++  L ++G+          M + GV  +  T+ ++
Sbjct: 177 ALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTM 236

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKK 211
            D +   G  +      D M   G + +VV  N LLS +CR  + ++T   ++ +     
Sbjct: 237 IDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSM 296

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
           +  PDG +++IL +G  + G+       FGE +++      +  +    L  L +  +V 
Sbjct: 297 L--PDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCS--ILLNGLCKDGKVA 352

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           +A + L ++      PT   ++  ++   ++ D   A  +++ M   H   PD +TYN +
Sbjct: 353 KAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRH-IRPDHITYNAL 411

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
              L K + + E E    EM K+   P+     T I     A + E    + + + + GI
Sbjct: 412 INGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGI 471

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
                S   ++      G++ +     ++M+++ ++
Sbjct: 472 KSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVV 507



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 139/312 (44%), Gaps = 15/312 (4%)

Query: 56  ICEILAHASSDDIESALACTGIIPTP----DLVHEVLQLSYDSPSSAVDFFRWAGRGQRL 111
           +C+    A ++ +   L  TG++PT      L++   Q+  D   +   F +   R  R 
Sbjct: 345 LCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVR-DLQGAFSIFEQMKSRHIRP 403

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
               +N +++ L K     +  + V  M++ GV  S+ TF ++ D+Y  AG+ ++     
Sbjct: 404 DHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVL 463

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEK 229
             M   G++ +V++  S++ A C+   +   A+  L+  + K V P+   +  +++ + +
Sbjct: 464 SDMQDKGIKSNVISFGSVVKAFCKN-GKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIE 522

Query: 230 EGNVEEANKTFGEMVERFEWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            G  E+A      +VE+ + +     +  Y   L  L +  Q+DEA + +  +  +   P
Sbjct: 523 SGGTEQAFL----LVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRP 578

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
            +  ++  +       D+  A++L   M  +    P   TY+ +   L    RVH++E  
Sbjct: 579 DVVSYNTIISACCNKGDTDRALELLQEMHKYD-IRPTLRTYHPLLSALGSAGRVHDMECL 637

Query: 348 FHEMIKNEWQPT 359
           +  M+    +P+
Sbjct: 638 YQHMVHKNVEPS 649



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 119/296 (40%), Gaps = 10/296 (3%)

Query: 147 LPTFAS---IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           LP+ +S   + +S    G++ +   +F ++   G   D  A N  + A C        AL
Sbjct: 120 LPSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQA-CVAAGDLDEAL 178

Query: 204 EFLNRVKK---IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
             L R+ +      PD  S+ +++ G  + G   +A K F EMV+R    P  +  Y T 
Sbjct: 179 AMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDR-GVAPNQI-TYNTM 236

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +   ++G  ++   +    M  +   P +  ++  L  L +         L D M  +  
Sbjct: 237 IDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYS- 295

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD  TY+++F+ L +      +   F E +K         C+  +  L    +   A 
Sbjct: 296 MLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAE 355

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           ++   ++  G++P  A  N L+ G   +  L       E+M +R I    +T + L
Sbjct: 356 QVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNAL 411



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 89/202 (44%), Gaps = 11/202 (5%)

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           L+++ R   V  A   L V  G    P    ++ A+   V   D   A+ +   M    G
Sbjct: 133 LLSVGRHADVRAAFGLL-VAAGAR--PDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEG 189

Query: 321 AFP-DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
           A P D+ +YN++   L ++ +  +  K F EM+     P  +   T I   +   + E  
Sbjct: 190 APPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAG 249

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL----IYEVTMHK 435
             + + +L++G  P   + N LL GL   GR+ + R   +EM +  +L     Y +    
Sbjct: 250 FRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDG 309

Query: 436 LKKAFYNESRSMRDIF-DSLER 456
           L +    +SR+M  +F +SL++
Sbjct: 310 LTRT--GDSRTMLSLFGESLKK 329


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 149/329 (45%), Gaps = 10/329 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L +NG FE++   +  M E G    +  +A+I D  C  G  + A    + M 
Sbjct: 254 FNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMP 313

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
            +G++ +VV  N++L  +C  E +   A E L+ + +K    D  +F IL++ + + G V
Sbjct: 314 SYGLKPNVVCYNTVLKGLCSAE-RWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLV 372

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +   +   +M+      P+ V+ Y T +    +   +DEA+  L+ M    C P    ++
Sbjct: 373 DRVIELLEQMLSH-GCMPD-VITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYT 430

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             L  L        A +L    M+  G  P+ +T+N +   L K   V +  +   +M+ 
Sbjct: 431 IVLKGLCSAGRWVDAEELMS-QMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLV 489

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           N   P  ++ +T I  L  A + E A+E+ N ++  GI P     + +   L   GR++ 
Sbjct: 490 NGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNK 549

Query: 414 VRRFAEEMLNRRI----LIYEVTMHKLKK 438
           V +  + + +  I    ++Y   +  L K
Sbjct: 550 VIQMFDNIKDTTIRSDAVLYNAVISSLCK 578



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/422 (20%), Positives = 165/422 (39%), Gaps = 46/422 (10%)

Query: 76  GIIPTPDLVHEVLQLSYDSP---SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G  P P + H +L+ +  S    +S         +G  L     NL+++ + + G  ++ 
Sbjct: 141 GCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEA 200

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +R +   G    + ++ ++    C A ++ +     D M       ++V  N+L+  
Sbjct: 201 VGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 192 ICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +CR      R  E L ++ +    PD   +A +++G  KEG++E AN+    M   +   
Sbjct: 261 LCRN-GLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM-PSYGLK 318

Query: 251 PEHVLAYETFLITLIRGKQ-----------------------------------VDEALK 275
           P +V+ Y T L  L   ++                                   VD  ++
Sbjct: 319 P-NVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIE 377

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
            L  M    C P +  ++  ++   K      AV L    M   G  P++++Y ++ + L
Sbjct: 378 LLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLK-SMSSCGCKPNTVSYTIVLKGL 436

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
               R  + E+   +MI+    P P+   T I  L      E AIE+   +L NG  P  
Sbjct: 437 CSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDL 496

Query: 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI--FDS 453
            S + ++ GL   G+  +       M+N+ I    +    +  A   E R  + I  FD+
Sbjct: 497 ISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDN 556

Query: 454 LE 455
           ++
Sbjct: 557 IK 558



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 135/325 (41%), Gaps = 39/325 (12%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
           L    +N++VD   +NG  +++   +  M   G +  + T+ ++ + +C  G  DEAVM 
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVML 413

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
              MS  G + + V+   +L  +C               +++   P+  +F  L+    K
Sbjct: 414 LKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK 473

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +G VE+A +   +M+     +P+ +++Y T +  L +  + +EAL+ L VM  +   P  
Sbjct: 474 KGLVEQAIELLKQMLVN-GCSPD-LISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNT 531

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             +S+    L +       +Q++D  +       D++ YN +   L K            
Sbjct: 532 IIYSSIACALSREGRVNKVIQMFD-NIKDTTIRSDAVLYNAVISSLCK------------ 578

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
                 W                  E + AI+ + Y++ NG +P E++   L+ GL + G
Sbjct: 579 -----RW------------------ETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEG 615

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMH 434
              + +    E+ +R  L   +  H
Sbjct: 616 LAKEAQELLSELCSRGALRKHLMRH 640



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 96/243 (39%), Gaps = 10/243 (4%)

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           VVA N++++  CR   Q + A      V   V P+  +F  ++ G    G + +A +   
Sbjct: 79  VVAYNAMVAGYCRA-GQLAAARRLAAAVP--VPPNAYTFFPVVRGLCTRGRIADALEVLD 135

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM   F+        Y   L    R      +++ L  M  + C       +  L+ + +
Sbjct: 136 EM--SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICE 193

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                 AV L    + F G   D ++YN + + L   KR  +VE+   EM++ +  P  +
Sbjct: 194 QGCVDEAVGLLR-KLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIV 252

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
              T I  L      E   E+   + E+G  P       ++ G+   G L      A E+
Sbjct: 253 TFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHL----EVANEI 308

Query: 422 LNR 424
           LNR
Sbjct: 309 LNR 311


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 141/343 (41%), Gaps = 3/343 (0%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   +G   S  A+N ++  L K G+ ++       MK+D   +L T+  + D  C AGK
Sbjct: 333 RQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGK 392

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            D A    D M   G+  +V  VN ++  +C+ +        F     K+  PD  +F  
Sbjct: 393 LDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCS 452

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  K G V++A K + +M++       + + Y + +       + ++  K  + M  
Sbjct: 453 LIDGLGKVGRVDDAYKVYEKMLD--SDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMIN 510

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +NC P L+  +  +D + K  +      +++ +       PD+ +Y+++   LIK    +
Sbjct: 511 QNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKA-RRFVPDARSYSILIHGLIKAGFAN 569

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E  + F+ M +             I       +   A ++   +   G  P   +   ++
Sbjct: 570 ETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVI 629

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            GL  + RL +     EE  ++RI +  V    L   F    R
Sbjct: 630 DGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGR 672



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 138/335 (41%), Gaps = 53/335 (15%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKY 163
           + +R  P A  +++++  L K G   + +     MKE G VL    +  + D +C  GK 
Sbjct: 544 KARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKV 603

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           ++A    + M   G E  VV   S++  + + +      + F     K ++ +   ++ L
Sbjct: 604 NKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSL 663

Query: 224 LEGWEKEGNVEEANKTFGEMVER------FEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
           ++G+ K G ++EA     E++++      + WN        + L  L++ ++++EAL   
Sbjct: 664 IDGFGKVGRIDEAYLILEELMQKGLTPNLYTWN--------SLLDALVKAEEINEALVCF 715

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
           + MK   C P                                    + +TY ++   L K
Sbjct: 716 QSMKELKCTP------------------------------------NQVTYGILINGLCK 739

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
            ++ ++   F+ EM K   +P+ ++  T I+ L  A     A  +++    NG +P  A 
Sbjct: 740 VRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSAC 799

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
            N ++ GL N  R  D     EE   R + I+  T
Sbjct: 800 YNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKT 834



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 139/319 (43%), Gaps = 7/319 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G   + + +  ++    K GR +   + +  MK   +   +  +    DS+   GK D A
Sbjct: 198 GYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMA 257

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLE 225
              F  +  +G++ D V   S++  +C+  N+   A+E    ++K    P   ++  ++ 
Sbjct: 258 WKFFHEIEANGLKPDEVTYTSMIGVLCKA-NRLDEAVEMFEHLEKNRRVPCTYAYNTMIM 316

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+   G  +EA        +R + +   V+AY   L  L +  +VDEALK    MK ++ 
Sbjct: 317 GYGSAGKFDEAYSLLER--QRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK-KDA 373

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P L  ++  +D+L +      A +L D M    G FP+  T N++ + L K++++ E  
Sbjct: 374 APNLSTYNILIDMLCRAGKLDTAFELRDSMQK-AGLFPNVRTVNIMVDRLCKSQKLDEAC 432

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             F EM      P  +   + I  L      + A +++  +L++           L+   
Sbjct: 433 AMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNF 492

Query: 406 RNLGRLSDVRRFAEEMLNR 424
            N GR  D  +  ++M+N+
Sbjct: 493 FNHGRKEDGHKIYKDMINQ 511



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 126/289 (43%), Gaps = 8/289 (2%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+H +++  + + +  + F+    +G  L   A+N+++D   K G+  + +  +  MK  
Sbjct: 558 LIHGLIKAGFANETYEL-FYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTK 616

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           G   ++ T+ S+ D      + DEA M F+      +E +VV  +SL+    +       
Sbjct: 617 GFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEA 676

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
            L     ++K + P+  ++  LL+   K   + EA   F  M E  +  P  V  Y   +
Sbjct: 677 YLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKE-LKCTPNQV-TYGILI 734

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             L + ++ ++A  F + M+ +   P+   ++  +  L K  +   A  L+D     +G 
Sbjct: 735 NGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKA-NGG 793

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
            PDS  YN + E L    R  +    F E  +   +  P++  T + +L
Sbjct: 794 VPDSACYNAMIEGLSNGNRAMDAFSLFEETRR---RGLPIHNKTCVVLL 839



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 2/178 (1%)

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           +M+ +F++ P    AY T +         D  L   + M+     PT+  F+  +    K
Sbjct: 157 QMMRKFKFRPAFS-AYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAK 215

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                 A+ L D M        D + YN+  +   K  +V    KFFHE+  N  +P  +
Sbjct: 216 EGRVDSALSLLDEMKS-SSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEV 274

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
              + I +L  A+  + A+E++ ++ +N  +P   + N +++G  + G+  +     E
Sbjct: 275 TYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLE 332


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 128/312 (41%), Gaps = 42/312 (13%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +++ I D  C  G+ DEA   F  M   GV  DV++  SL+   CR          F   
Sbjct: 641 SYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEM 700

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V   V PD  +F++L++   KEG V EAN+    M++R      + + Y T +  L    
Sbjct: 701 VDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQR--GCIPNTVTYTTLVKGLCMND 758

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-----P 323
           ++ EA +    M+   C P +  +   +  L +  +   A++L   M+   G +     P
Sbjct: 759 RISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKP 818

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D ++Y++I + L K+ R  E  + F EM              A+                
Sbjct: 819 DVISYSIIIDGLCKHGREDEARELFKEM-------------KAL---------------- 849

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
                 G++P   S   L+ G    G+L D +    EM+++ + +  VT   +   F  E
Sbjct: 850 ------GVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKE 903

Query: 444 SRSMRDIFDSLE 455
            +  + +F  +E
Sbjct: 904 GQIDKALFQKME 915



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 156/348 (44%), Gaps = 17/348 (4%)

Query: 105 AGR-GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGA 160
            GR G +  P   ++++++D L K+ R ++       MK  G++  + ++ ++   +C +
Sbjct: 447 TGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLS 506

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGD 218
           GK+++A   F+ M   G++ DV   + L+  +C++    + ++ LE + +   I+D    
Sbjct: 507 GKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVV-- 564

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +   L++G   +  + +A + F +M ++    P +V+   T +  L +   +  AL+  +
Sbjct: 565 TCTTLVKGLCMKHRISKATQLFLKM-QKLGCMP-NVVTCATLMKGLCQSGNIKIALELHK 622

Query: 279 VM------KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
            M       G NC P    +S  +D L K      A +L+  M    G  PD ++Y  + 
Sbjct: 623 NMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKAL-GVIPDVISYTSLI 681

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
               ++ +  + +  F+EM+    QP     +  I ML    +   A E+   +++ G +
Sbjct: 682 HGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCI 741

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           P   +   L+ GL    R+S+  +   +M     L   VT   L K  
Sbjct: 742 PNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGL 789



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/388 (20%), Positives = 153/388 (39%), Gaps = 57/388 (14%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL----------SLPTFASIFDSYCGAGKY 163
           + +N++++ L    R  +   A+  +   G +           + T + + D  C  GK 
Sbjct: 11  FTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKEGKV 70

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
            EA    +VM   G   D+V  ++L+  +C +   +     F++  K    PD  ++  L
Sbjct: 71  IEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTL 130

Query: 224 LEGWEKEGNVEEANKTFGEMVE---RFEWNPEHVL-AYETFLITLIRGKQVDEALKFLRV 279
           ++G  + GN+  A +   EM+    R+    +  L +Y   +  L + ++ DEA +  + 
Sbjct: 131 MKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKE 190

Query: 280 MKGENCFPTL--------------------KFFSNALDILVKLNDSTHAVQLWDI----- 314
           MK +   P +                      F+  LD+ ++ + +T  V L D+     
Sbjct: 191 MKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGV-LIDMFCKEG 249

Query: 315 ----------MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
                     +MV  G   D +TY+ + + L    R+ E  + F  M K   +P  +   
Sbjct: 250 KVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYG 309

Query: 365 TAITMLLDADEPEIAIEIWNYILEN-------GILPLEASANELLVGLRNLGRLSDVRRF 417
           T +  L    +  IA+ +   +L +        I P   +++ L+  L   G++ +    
Sbjct: 310 TLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANEL 369

Query: 418 AEEMLNRRILIYEVTMHKLKKAFYNESR 445
            E M+ R  ++  VT   L K    E R
Sbjct: 370 LEVMIQRGCILDIVTYSTLIKGLCMEHR 397



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 113/284 (39%), Gaps = 8/284 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L +++ I D  C   + DEA   F  M   G+  DV++  SL+   C           F
Sbjct: 164 TLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLF 223

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              +   + PD  +  +L++ + KEG V EAN+    MV R       ++ Y T +  L 
Sbjct: 224 NEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHR--GCILDIVTYSTLIKGLC 281

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF--- 322
              ++ EA +    MK   C P    +   +  L +      A+ L   M+     +   
Sbjct: 282 MKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIK 341

Query: 323 ---PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
              PD  T +M+ + L K  +V E  +    MI+       +  +T I  L        A
Sbjct: 342 CIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEA 401

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
             ++  + + G  P   +   L+ GL   G ++   +  +EMLN
Sbjct: 402 TWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLN 445



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 127/282 (45%), Gaps = 7/282 (2%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           + T + + D  C  GK  EA    +V+   G   DVV   +L+  +C  +++ S+A +  
Sbjct: 528 VTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLC-MKHRISKATQLF 586

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER---FEWNPE-HVLAYETFL 261
            +++K+   P+  + A L++G  + GN++ A +    M+     +  N + + ++Y   +
Sbjct: 587 LKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIII 646

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             L +  + DEA +  + MK     P +  +++ +    +      A  L++  MV  G 
Sbjct: 647 DGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFN-EMVDIGV 705

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            PD  T++++ + L K  +V E  +    MI+    P  +   T +  L   D    A +
Sbjct: 706 QPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQ 765

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
           ++  + + G LP   +   L+ GL   G +       ++ML+
Sbjct: 766 LFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLS 807



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/305 (20%), Positives = 130/305 (42%), Gaps = 7/305 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L +++ I D  C   + DEA   F+ M   G+  DV++  +L+   C           F
Sbjct: 457 TLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLF 516

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              +   + PD  + ++L++   K+G V EANK    +++R       V+   T +  L 
Sbjct: 517 NEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQR--GCILDVVTCTTLVKGLC 574

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF--- 322
              ++ +A +    M+   C P +   +  +  L +  +   A++L   M+     +   
Sbjct: 575 MKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGIN 634

Query: 323 --PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             P++++Y++I + L K  R  E  + F EM      P  ++  + I     + + + A 
Sbjct: 635 CKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAK 694

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
            ++N +++ G+ P   + + L+  L   G++ +     E M+ R  +   VT   L K  
Sbjct: 695 YLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGL 754

Query: 441 YNESR 445
               R
Sbjct: 755 CMNDR 759



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 125/287 (43%), Gaps = 16/287 (5%)

Query: 173 MSMHGVEQDVVAVNSLLSAIC--RQENQTSRALEFLNRVKKIVD-------PDGDSFAIL 223
           M + G+  D    N L++ +C  ++ N+   A+  + R   I D       PD  + ++L
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSML 60

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++   KEG V EAN+    M++R       ++ Y T +  L    ++ EA      M+  
Sbjct: 61  IDILCKEGKVIEANELLEVMIQR--GCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKL 118

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-----PDSLTYNMIFECLIKN 338
            C P    +   +  L +  +   A+QL   M+   G +     P  ++Y++I + L K+
Sbjct: 119 GCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKD 178

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
           +R  E  + F EM      P  ++  + I     + + E A  ++N +L+ GI P   ++
Sbjct: 179 RREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTS 238

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             L+      G++ +     E M++R  ++  VT   L K    + R
Sbjct: 239 GVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHR 285



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 128/292 (43%), Gaps = 14/292 (4%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           + T   + D +C  GK  EA    +VM   G   D+V  ++L+  +C  +++ S A +  
Sbjct: 235 VTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLC-MKHRISEATQLF 293

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHV---LAYETFL 261
             +KK+   PD  ++  L++G  + G +  A     EM+ +  ++  + +   +   + L
Sbjct: 294 MSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSML 353

Query: 262 I-TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           I  L +  +V EA + L VM    C   +  +S  +  L   +  + A  L+  M    G
Sbjct: 354 IDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKL-G 412

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN------EWQPTPLNCATAITMLLDAD 374
             PD++TY  + + L +   ++   +   EM+ +      + +PT ++ +  I  L    
Sbjct: 413 CRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDR 472

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
             + A E++  +   GI+P   S   L+ G    G+    +    EML+  I
Sbjct: 473 REDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGI 524



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 2/90 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++++++D L K+GR ++     + MK  GV+ ++ ++ S+   +C +GK ++A   F+ M
Sbjct: 822 SYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEM 881

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
              GV+ + V  + ++   C+ E Q  +AL
Sbjct: 882 VDQGVQLNAVTYSVMIHGFCK-EGQIDKAL 910


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 106/494 (21%), Positives = 191/494 (38%), Gaps = 75/494 (15%)

Query: 19  SSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGII 78
           S++ +T++P S +P+ P+    PT       + S R     ++       +S++      
Sbjct: 58  SATKSTSTPLSQSPNFPSLCSLPTSKSELASNFSGRRSTRFVSKFHFGRPKSSMTTRHSA 117

Query: 79  PTPDLVHEVLQLSYDSPS--------------------------------SAVDFFRWA- 105
              +++H+VLQ   D  S                                 A+  F +A 
Sbjct: 118 IAEEVLHQVLQFGKDDASLDNILLNFESKLCGSEDYTFLLRELGNRGECWKAIRCFDFAL 177

Query: 106 ---GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
              GR       A + M+  LG+ G+ E           +G   ++  F+++  +Y  +G
Sbjct: 178 VREGRKNERGKLA-SAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSG 236

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSF 220
            +DEA+  F+ M + G++ ++V  N+++ A  +   +  R +E F   ++  V PD  ++
Sbjct: 237 YFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITY 296

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             LL    + G  E A   F EM++R     + V  Y T L  + +G Q+D A + +  M
Sbjct: 297 NSLLAVCSRGGLWEAARNLFNEMIDR--GIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEM 354

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH------------------GAF 322
            G+   P +  +S   D   K      A+ L++ M                      G F
Sbjct: 355 PGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRF 414

Query: 323 PDSL----------------TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            D+L                TYN + +   K  + +EV + F EM K+   P  L  +T 
Sbjct: 415 EDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTL 474

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           I +       E A+E++    + G+       +EL+  L   G +       +EM    I
Sbjct: 475 IDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGI 534

Query: 427 LIYEVTMHKLKKAF 440
               VT + +  AF
Sbjct: 535 RPNVVTYNSIIDAF 548



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 1/141 (0%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D  GK G+F ++    + MK+D V  +L T++++ D Y     Y+EA+  F    
Sbjct: 436 YNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFK 495

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G++ DVV  + L++A+C+     S  L      K+ + P+  ++  +++ + +    E
Sbjct: 496 QAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAE 555

Query: 235 EANKTFGEMVERFEWNPEHVL 255
                 G   ER   +P  +L
Sbjct: 556 FLVDGVGASNERQSESPSFML 576



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 8/187 (4%)

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
           TL R  +V+ A         E    T+  FS  +    K      A+++++ M V  G  
Sbjct: 196 TLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKV-SGLK 254

Query: 323 PDSLTYNMIFECLIKN----KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
           P+ +TYN + +   K     KRV E+   F EM++N  QP  +   + + +       E 
Sbjct: 255 PNLVTYNAVIDACGKGGVEFKRVVEI---FEEMLRNGVQPDRITYNSLLAVCSRGGLWEA 311

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
           A  ++N +++ GI     + N LL  +   G++        EM  ++IL   VT   +  
Sbjct: 312 ARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMAD 371

Query: 439 AFYNESR 445
            +    R
Sbjct: 372 GYAKAGR 378


>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
          Length = 506

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 107/206 (51%), Gaps = 3/206 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ S+   +C +G+  EA+   + M  +GVE +VV  +S +  +C+    T     F + 
Sbjct: 270 TYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSM 329

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           VK+ + PD  +++ LL G+  EG + E +  F  MV+  +  P+H + + T +    +  
Sbjct: 330 VKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQS-DMQPDHYV-FNTLIYASAKQG 387

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +VDEA+     M+ +   P    ++  ++   K+    +A+ L+   MV +G  P+ +TY
Sbjct: 388 KVDEAMLVFSKMRHQGLKPNCVTYNTLINGYCKITRMENALALFQ-EMVSNGVSPNFITY 446

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKN 354
           N++ + L +  R    ++F+ ++IK+
Sbjct: 447 NIMLQGLFRTGRTGTAKEFYVQIIKS 472



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 136/322 (42%), Gaps = 26/322 (8%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           ++  +++  L    R ++    + +M +DG   LP   +++++ D     G  D+A  ++
Sbjct: 162 FSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVTDGLLKGGDPDKAYATY 221

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M    +  +VV  +S+++A+C+ +    +A+E  +R VK  V P+  ++  L+ G+  
Sbjct: 222 REMLDRRILPNVVTYSSIIAALCKGQ-AMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCS 280

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G + EA K   +M         +V+ Y +F+  L +  +  EA K    M      P +
Sbjct: 281 SGQLTEAIKFLEKMCS--NGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDI 338

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF---------PDSLTYNMIFECLIKNKR 340
             +S+ L          H   +   ++  HG F         PD   +N +     K  +
Sbjct: 339 TTYSSLL----------HGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGK 388

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           V E    F +M     +P  +   T I         E A+ ++  ++ NG+ P   + N 
Sbjct: 389 VDEAMLVFSKMRHQGLKPNCVTYNTLINGYCKITRMENALALFQEMVSNGVSPNFITYNI 448

Query: 401 LLVGLRNLGRLSDVRRFAEEML 422
           +L GL   GR    + F  +++
Sbjct: 449 MLQGLFRTGRTGTAKEFYVQII 470



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 136/308 (44%), Gaps = 14/308 (4%)

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK----IVD 214
           G+G  ++A+  FD +   G+   + ++N  L+ + R  +  + A+   NR+ +    +V 
Sbjct: 30  GSGGAEDALDVFDELLRRGIGAPIRSLNGALADVAR--DNPAAAVSRFNRMARAGASMVT 87

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEA 273
           P   ++ IL+      G ++      G +V++ F   P   + +   L  L   K+ D+A
Sbjct: 88  PTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEP---IIFNPLLKGLCADKRTDDA 144

Query: 274 LKF-LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV-FHGAFPDSLTYNMI 331
           +   LR M    C P +   +  L  L   N S  A++L  +M     G  P+ ++Y+ +
Sbjct: 145 MDIVLRGMTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTV 204

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
            + L+K     +    + EM+     P  +  ++ I  L      + A+E+ + +++NG+
Sbjct: 205 TDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGV 264

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RD 449
            P   +   L+ G  + G+L++  +F E+M +  +    VT            R    R 
Sbjct: 265 TPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARK 324

Query: 450 IFDSLERR 457
           IF S+ +R
Sbjct: 325 IFYSMVKR 332



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 83/412 (20%), Positives = 172/412 (41%), Gaps = 48/412 (11%)

Query: 79  PTPDLVHEVLQLSYDSPSSAVDFF-RWAGRGQRL---SPYAWNLMVDVLGKNGRFEQMWN 134
           P   L   +  ++ D+P++AV  F R A  G  +   + + + +++      GR +  + 
Sbjct: 52  PIRSLNGALADVARDNPAAAVSRFNRMARAGASMVTPTVHTYGILIGCCCSAGRLDLGFA 111

Query: 135 AVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAI 192
           A+  + + G    P  F  +    C   + D+A+ +    M+  G   +V +   +L  +
Sbjct: 112 ALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELGCVPNVFSHTIILKGL 171

Query: 193 CRQENQTSRALEFLNRVKKIVD---PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
           C  EN++  ALE L+ +        P+  S++ + +G  K G+ ++A  T+ EM++R   
Sbjct: 172 C-HENRSQEALELLHMMADDGGGCLPNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRIL 230

Query: 250 NPEHVLAYETFLITLIRGKQVD-----------------------------------EAL 274
              +V+ Y + +  L +G+ +D                                   EA+
Sbjct: 231 --PNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAI 288

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           KFL  M      P +  +S+ +D L K    T A +++   MV  G  PD  TY+ +   
Sbjct: 289 KFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIF-YSMVKRGLKPDITTYSSLLHG 347

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
                 + E+   F  M++++ QP      T I       + + A+ +++ +   G+ P 
Sbjct: 348 YAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPN 407

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446
             + N L+ G   + R+ +     +EM++  +    +T + + +  +   R+
Sbjct: 408 CVTYNTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRT 459


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 128/312 (41%), Gaps = 42/312 (13%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +++ I D  C  G+ DEA   F  M   GV  DV++  SL+   CR          F   
Sbjct: 485 SYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEM 544

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V   V PD  +F++L++   KEG V EAN+    M++R      + + Y T +  L    
Sbjct: 545 VDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQR--GCIPNTVTYTTLVKGLCMND 602

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-----P 323
           ++ EA +    M+   C P +  +   +  L +  +   A++L   M+   G +     P
Sbjct: 603 RISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKP 662

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D ++Y++I + L K+ R  E  + F EM              A+                
Sbjct: 663 DVISYSIIIDGLCKHGREDEARELFKEM-------------KAL---------------- 693

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
                 G++P   S   L+ G    G+L D +    EM+++ + +  VT   +   F  E
Sbjct: 694 ------GVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKE 747

Query: 444 SRSMRDIFDSLE 455
            +  + +F  +E
Sbjct: 748 GQIDKALFQKME 759



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 148/357 (41%), Gaps = 14/357 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED----GVLSLPTFAS---I 153
           F      G R    A+  ++  L + G+     +  + M  D    G+   PT  S   I
Sbjct: 68  FMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSII 127

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
            D  C   + DEA   F  M   G+  DV++  SL+   CR          F   +   +
Sbjct: 128 IDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGI 187

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
             D  + ++L++   KEG V EAN+    M++R       ++ Y T +  L    ++ EA
Sbjct: 188 RSDVTTSSMLIDILCKEGKVIEANELLEVMIQR--GCILDIVTYSTLIKGLCMKHRISEA 245

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-----PDSLTY 328
            +    M+   C P    +   +  L +  +   A+QL   M+   G +     P  ++Y
Sbjct: 246 TRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISY 305

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           ++I + L K++R  E  + F EM      P  ++  T I     + + E A  ++N +L+
Sbjct: 306 SIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLD 365

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            GI P   +++ L+  L   G++ +  +  E ++ R  +   VT   L K    + R
Sbjct: 366 VGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHR 422



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 158/348 (45%), Gaps = 17/348 (4%)

Query: 105 AGR-GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGA 160
            GR G +  P   ++++++D L K+ R ++     + MK  G++  + ++ ++   +C +
Sbjct: 291 TGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLS 350

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGD 218
           GK+++A   F+ M   G++ DV   + L+  +C++    + ++ LE +  +++   PD  
Sbjct: 351 GKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVV--IQRGCIPDVV 408

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +   L++G   +  + +A + F +M ++    P +V+   T +  L +   +  AL+  +
Sbjct: 409 TCTTLVKGLCMKHRISKATQLFLKM-QKLGCMP-NVVTCATLMKGLCQSGNIKIALELHK 466

Query: 279 VM------KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
            M       G NC P    +S  +D L K      A +L+  M    G  PD ++Y  + 
Sbjct: 467 NMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKAL-GVIPDVISYTSLI 525

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
               ++ +  + +  F+EM+    QP     +  I ML    +   A E+   +++ G +
Sbjct: 526 HGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCI 585

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           P   +   L+ GL    R+S+  +   +M     L   VT   L K  
Sbjct: 586 PNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGL 633



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 127/282 (45%), Gaps = 7/282 (2%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           + T + + D  C  GK  EA    +V+   G   DVV   +L+  +C  +++ S+A +  
Sbjct: 372 VTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLC-MKHRISKATQLF 430

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER---FEWNPE-HVLAYETFL 261
            +++K+   P+  + A L++G  + GN++ A +    M+     +  N + + ++Y   +
Sbjct: 431 LKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIII 490

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             L +  + DEA +  + MK     P +  +++ +    +      A  L++  MV  G 
Sbjct: 491 DGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFN-EMVDIGV 549

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            PD  T++++ + L K  +V E  +    MI+    P  +   T +  L   D    A +
Sbjct: 550 QPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQ 609

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
           ++  + + G LP   +   L+ GL   G +       ++ML+
Sbjct: 610 LFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLS 651



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 122/283 (43%), Gaps = 9/283 (3%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           + T   + D +C  GK  EA    +VM   G   D+V  ++L+  +C  +++ S A +  
Sbjct: 10  VTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLC-MKHRISEATQLF 68

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-----RFEWNPEHVLAYETF 260
             +KK+   PD  ++  L++G  + G +  A     EM+        +  P  +++Y   
Sbjct: 69  MSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT-LVSYSII 127

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +  L + ++ DEA +  + MK +   P +  +++ +    +      A  L++ M+   G
Sbjct: 128 IDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDV-G 186

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
              D  T +M+ + L K  +V E  +    MI+       +  +T I  L        A 
Sbjct: 187 IRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEAT 246

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
            ++  + + G  P   +   L+ GL   G ++   +  +EMLN
Sbjct: 247 RLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLN 289



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 104/238 (43%), Gaps = 7/238 (2%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + PD  +  +L++ + KEG V EAN+    MV+R       ++ Y T +  L    ++ E
Sbjct: 6   IQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQR--GCILDIVTYSTLIKGLCMKHRISE 63

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILV---KLNDSTHAVQ--LWDIMMVFHGAFPDSLT 327
           A +    MK   C P    +   +  L    K+N + H  Q  L D         P  ++
Sbjct: 64  ATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVS 123

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y++I + L K++R  E  + F EM      P  ++  + I     + + E A  ++N +L
Sbjct: 124 YSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEML 183

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           + GI     +++ L+  L   G++ +     E M+ R  ++  VT   L K    + R
Sbjct: 184 DVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHR 241



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 52/90 (57%), Gaps = 2/90 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++++++D L K+GR ++     + MK  GV+ ++ ++ S+   +C +GK ++A   F+ M
Sbjct: 666 SYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEM 725

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
              GV+ + V  + ++   C+ E Q  +AL
Sbjct: 726 VDQGVQLNAVTYSVMIHGFCK-EGQIDKAL 754


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 170/406 (41%), Gaps = 46/406 (11%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ---RLSPYAWNLMVDVLGKNGRFEQM 132
           G++PT +  + +L L      +   +  +A   +   + S Y +N+M++VL K G+ ++ 
Sbjct: 181 GVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKA 240

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            + V  M+  GV  ++ T+ +I   YC +G+ + A      M    +E D     SL+S 
Sbjct: 241 KDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISG 300

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           +C+Q      +  F   V+K + P    +  L++G+  +GN++ A+    EM+++   +P
Sbjct: 301 MCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKK-GISP 359

Query: 252 EHVLAYETFLITLIRGKQVDEA---LK--------------------FLRVMKGENCF-- 286
             +  Y + +  L   ++ DEA   +K                    + R    +  F  
Sbjct: 360 T-MSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLL 418

Query: 287 ----------PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
                     PT K +++ L +L K N    A  L+   +   G  PD++ +N + +   
Sbjct: 419 HDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFK-KITSEGVLPDAIMFNALIDGHC 477

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
            N  V    +   +M + +  P  +   T +       + E A E+++ +   GI P   
Sbjct: 478 SNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHI 537

Query: 397 SANELLVGLRNLGRLSDVRRFAEEML----NRRILIYEVTMHKLKK 438
           S N L+ G    G + D  R   EML    N  +L Y   +  L K
Sbjct: 538 SFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCK 583



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/346 (19%), Positives = 135/346 (39%), Gaps = 41/346 (11%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A D      + Q++ P  + +  ++  + K GR E+       M + G+  S   + ++ 
Sbjct: 274 AADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLI 333

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIV 213
           D +C  G  D A    D M   G+   +   NSL+ A+   E +T  A   +  ++ K +
Sbjct: 334 DGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALF-MEQRTDEAECMIKEIQEKGI 392

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  ++ IL+ G+ +  N ++A     EM+      P     Y + L  L +  ++ EA
Sbjct: 393 SPDAITYNILINGYCRCANAKKAFLLHDEMLAS-GIKPTKK-TYTSLLHVLSKKNRMKEA 450

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL---------------WDIMMVF 318
               + +  E   P    F+  +D     ++   A +L               ++ +M  
Sbjct: 451 DDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQG 510

Query: 319 H-------------------GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
           H                   G  PD +++N +     +   + +  +  +EM+   + PT
Sbjct: 511 HCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPT 570

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
            L     +  L    E ++A E+   ++  G+ P + +   L+ G+
Sbjct: 571 VLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGI 616



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 91/198 (45%), Gaps = 5/198 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + +   +  ++ VL K  R ++  +  + +  +GVL     F ++ D +C       A
Sbjct: 426 GIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGA 485

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
                 M    V  D V  N+++   CR E +   A E  + +K+  + PD  SF  L+ 
Sbjct: 486 FELLKDMDRMKVPPDEVTFNTIMQGHCR-EGKVEEARELFDEMKRRGIKPDHISFNTLIS 544

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ + G++++A +   EM++   +NP  VL Y   +  L + ++ D A + L+ M  +  
Sbjct: 545 GYSRRGDIKDAFRVRNEMLDT-GFNPT-VLTYNALVQGLCKNQEGDLAEELLKEMVSKGM 602

Query: 286 FPTLKFFSNALDILVKLN 303
            P    +   ++ + K+N
Sbjct: 603 TPDDTTYFTLIEGIAKVN 620



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 119/319 (37%), Gaps = 15/319 (4%)

Query: 143 GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202
           G  S   F  +  S C   + DEA   F  M   GV   +   NSLLS   +     +  
Sbjct: 147 GFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAW 206

Query: 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           + +    +  +     +F I++    KEG +++A    G M E     P +++ Y T + 
Sbjct: 207 VLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHM-ETSGVKP-NIVTYNTIVH 264

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
                 +V+ A   L  MK +   P    + + +  + K      A ++++  MV  G  
Sbjct: 265 GYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFE-EMVQKGLR 323

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL---DADEPEIA 379
           P ++ YN + +       +     +  EM+K    PT     + I  L      DE E  
Sbjct: 324 PSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECM 383

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHK 435
           I+    I E GI P   + N L+ G              +EML   I      Y   +H 
Sbjct: 384 IK---EIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHV 440

Query: 436 LKKAFYNESRSMRDIFDSL 454
           L K   N  +   D+F  +
Sbjct: 441 LSKK--NRMKEADDLFKKI 457


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 134/291 (46%), Gaps = 11/291 (3%)

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS--MHGVEQDVVAVNSLLSAICR 194
           R+ +E  VL+   F  IF +   A    EAV  F  M+  +H  +Q V + NS+L+ I  
Sbjct: 90  RMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMANDLH-CKQTVKSFNSVLNVII- 147

Query: 195 QENQTSRALEFLNRV----KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           QE   S A +F   V     K   P+  ++ ++++   K G ++ A  TF EM  +   N
Sbjct: 148 QEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLK-NCN 206

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ V  Y T +  L + ++VDEA+  L  M+ E C P    F+  +D L K  D + A +
Sbjct: 207 PD-VFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAK 265

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           L D M +  G  P+ +TYN +   L    ++ +      +M+ ++  P  +   T I  L
Sbjct: 266 LVDNMFL-KGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGL 324

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           +     E  + I   + E G    E   + L+ GL   G+  +  R  +EM
Sbjct: 325 VKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEM 375



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 138/323 (42%), Gaps = 4/323 (1%)

Query: 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVLSLPTFASIFDSYCGA 160
           F    +G + +   +NL++  L K G+ ++  +  R M  ++    + T++++ +  C  
Sbjct: 163 FGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKE 222

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
            + DEAV   D M   G   + V  N L+ A+ +  + +  A    N   K   P+  ++
Sbjct: 223 RRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTY 282

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ G   +G +++A     +MV   +  P  V  Y T +  L++ ++ ++ +  L  M
Sbjct: 283 NTLIHGLCLKGKLDKALSLLEKMVSS-KCVPNQV-TYGTIINGLVKQRRAEDGVHILMSM 340

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
           +          +S+ +  L K   S +AV+LW   M   G  P+ + Y    + L ++++
Sbjct: 341 EERGQKANEYIYSSLISGLFKEGKSENAVRLWK-EMAEKGCKPNVVVYGAFIDGLCRDEK 399

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
             E E    EM+   + P     ++ +       + + AI +W  ++   +       + 
Sbjct: 400 PDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSV 459

Query: 401 LLVGLRNLGRLSDVRRFAEEMLN 423
           LL GL   GRL +       ML 
Sbjct: 460 LLNGLCESGRLREALTVWTHMLG 482



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/310 (19%), Positives = 135/310 (43%), Gaps = 6/310 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDV 172
           + ++ +++ L K  R ++    +  M+ +G L  P TF  + D+    G    A    D 
Sbjct: 210 FTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDN 269

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M + G   + V  N+L+  +C +  +  +AL  L + V     P+  ++  ++ G  K+ 
Sbjct: 270 MFLKGCVPNEVTYNTLIHGLCLK-GKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQR 328

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             E+       M ER +   E++  Y + +  L +  + + A++  + M  + C P +  
Sbjct: 329 RAEDGVHILMSMEERGQKANEYI--YSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVV 386

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +   +D L +      A  +   M+   G  P++ TY+ + +   K     +    + EM
Sbjct: 387 YGAFIDGLCRDEKPDEAEDILQEMLS-KGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEM 445

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +  + +   + C+  +  L ++     A+ +W ++L  G+ P   + + ++ GL ++G +
Sbjct: 446 MSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSV 505

Query: 412 SDVRRFAEEM 421
               +   EM
Sbjct: 506 DKGLKLFYEM 515



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 130/312 (41%), Gaps = 18/312 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVM 173
            +  +++ L K  R E   + +  M+E G  +    ++S+       GK + AV  +  M
Sbjct: 316 TYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEM 375

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +  G + +VV   + +  +CR E            + K   P+  +++ L++G+ K+G+ 
Sbjct: 376 AEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDS 435

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A   + EM+ +   +  +V+     L  L    ++ EAL     M GE   P +  +S
Sbjct: 436 QKAILVWKEMMSQDMRH--NVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYS 493

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFH-GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           + +  L  +      ++L+  M      + PD +TYN++F  L +   +       + M+
Sbjct: 494 SMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSML 553

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P  L C   +  L +   P           ++G L L+    EL+V L    R  
Sbjct: 554 DEGCDPDSLTCNIFLETLRERINPP----------QDGRLFLD----ELVVRLLKRERKL 599

Query: 413 DVRRFAEEMLNR 424
              R  EEML R
Sbjct: 600 SALRIVEEMLLR 611



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 99/256 (38%), Gaps = 10/256 (3%)

Query: 199 TSRALEFLNRVKKIVDPDGDS-----FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           TSR   F+++V   +  +G       F ++ +   K     EA   F  M        + 
Sbjct: 77  TSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMANDLHCK-QT 135

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCF---PTLKFFSNALDILVKLNDSTHAVQ 310
           V ++ + L  +I+      A KF   + G N     P L  ++  +  L KL     AV 
Sbjct: 136 VKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVD 195

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
            +   M      PD  TY+ +   L K +RV E      EM      P P+     I  L
Sbjct: 196 TFR-EMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDAL 254

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
               +   A ++ + +   G +P E + N L+ GL   G+L       E+M++ + +  +
Sbjct: 255 SKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQ 314

Query: 431 VTMHKLKKAFYNESRS 446
           VT   +      + R+
Sbjct: 315 VTYGTIINGLVKQRRA 330



 Score = 47.0 bits (110), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 42/220 (19%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-----------------DGVLS--- 146
           RGQ+ + Y ++ ++  L K G+ E   NAVR+ KE                 DG+     
Sbjct: 343 RGQKANEYIYSSLISGLFKEGKSE---NAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEK 399

Query: 147 ----------------LP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
                           LP   T++S+   +   G   +A++ +  M    +  +VV  + 
Sbjct: 400 PDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSV 459

Query: 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           LL+ +C           + + + + + PD  +++ +++G    G+V++  K F EM  + 
Sbjct: 460 LLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQE 519

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
             +   V+ Y      L R   +  A+  L  M  E C P
Sbjct: 520 PKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDP 559


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 152/338 (44%), Gaps = 23/338 (6%)

Query: 60  LAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFR--WAGRGQRLSPYAWN 117
           LAHA  D          ++    L++ + +L      +A D FR   A  G R + + +N
Sbjct: 39  LAHAQPD----------VVSYTTLINGLCKLG--RVDAAFDLFRKMVAAGGCRPNAFTYN 86

Query: 118 LMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
            +VD L K  R +     +    K D    + T+ ++  +    G+ DEA+ +F  M+  
Sbjct: 87  ALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEE 146

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEE 235
           G    +V+ N++++ +CR   + + ALE  N  + +   P+  +++++++G  K   ++E
Sbjct: 147 GYVPTLVSFNAIITGLCRAR-RLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDE 205

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A +    MV   E     ++AY   ++      ++D AL  LR M  + C P +  ++  
Sbjct: 206 AQQLLDRMVS--EGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVV 263

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           +D L K+     A +++   +V +   P+ +TY+ +     +  RV E  K   EM    
Sbjct: 264 IDKLCKVGRVDDAHEIFR-ELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM---A 319

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            +P  +   T I  L   D  E A  ++  + E G +P
Sbjct: 320 CRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVP 357



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 7/206 (3%)

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           +I+L+G  + G V +A + F   +E     P+ V++Y T +  L +  +VD A    R M
Sbjct: 14  SIILQGLCRCGRVAQALEHFDASLELAHAQPD-VVSYTTLINGLCKLGRVDAAFDLFRKM 72

Query: 281 -KGENCFPTLKFFSNALDILVKLN--DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
                C P    ++  +D L K +  D+  AV        F    PD +TYN +   L +
Sbjct: 73  VAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFA---PDVVTYNTLMAALFQ 129

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             RV E    F +M +  + PT ++    IT L  A     A+E++N +++    P   +
Sbjct: 130 LGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVT 189

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLN 423
            + ++ GL    +L + ++  + M++
Sbjct: 190 YSVVIDGLCKSDQLDEAQQLLDRMVS 215



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 5/185 (2%)

Query: 260 FLITLIRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
            L  L R  +V +AL+ F   ++  +  P +  ++  ++ L KL     A  L+  M+  
Sbjct: 16  ILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAA 75

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            G  P++ TYN + + L K  R+        E  K ++ P  +   T +  L      + 
Sbjct: 76  GGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDE 135

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMH 434
           A+  +  + E G +P   S N ++ GL    RL+D      EM++R     ++ Y V + 
Sbjct: 136 ALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVID 195

Query: 435 KLKKA 439
            L K+
Sbjct: 196 GLCKS 200


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 156/351 (44%), Gaps = 11/351 (3%)

Query: 98  AVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFD 155
           A+ F + A  +G  +    ++ +V    + GR ++  + V  M   G    + T+ +I D
Sbjct: 395 ALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVD 454

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-D 214
            +C  G+ DEA      M  HG + + V+  +LL+ +C    ++  A E +N  ++    
Sbjct: 455 GFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLC-HSGKSLEAREMINVSEEHWWT 513

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEA 273
           P+  ++  ++ G  +EG + EA     EMVE+ F   P  +      + +L + ++V EA
Sbjct: 514 PNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEI---NLLIQSLCQNQKVVEA 570

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
            K+L     + C   +  F+  +    ++ D   A+ + D M +  G  PD++TY  +F+
Sbjct: 571 KKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYL-SGKHPDAVTYTALFD 629

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L K  R+ E  +   +M+     PTP+   + I         +  + +   +L+    P
Sbjct: 630 ALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKMLKRQ--P 687

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
                N+++  L + G L +  +   ++L     +   T H L +++  + 
Sbjct: 688 FRTVYNQVIEKLCDFGNLEEAEKLLGKVLRTASKVDANTCHVLMESYLKKG 738



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 158/383 (41%), Gaps = 43/383 (11%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P LV  VL+   D    A++FF WA R  R S  P  +  M+DVL K    +     +R+
Sbjct: 167 PPLVCAVLRSQADE-RVALNFFYWADRQWRYSHHPVVYYTMLDVLSKTKLCQGARRVLRL 225

Query: 139 MKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M   G+   P  F  +  SY  AGK   A+    +M   GVE  +   N+ +  + +   
Sbjct: 226 MTRRGIECPPEAFGYVMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKG-G 284

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEA-------------------- 236
           +  +AL+FL R++   + PD  ++  L++G+     +E+A                    
Sbjct: 285 KLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYY 344

Query: 237 --------NKTFGE---MVERFEWN----PEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
                    K   E   ++E+  WN    P+ V  Y T +  L +    D+AL FL+  +
Sbjct: 345 TVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQV-TYNTLIHMLSKHGHADDALAFLKEAQ 403

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            +        +S  +    +      A  L  I M   G  PD +TY  I +   +  R+
Sbjct: 404 DKGFHIDKVGYSAIVHSFCQKGRMDEAKSLV-IDMYSRGCNPDVVTYTAIVDGFCRLGRI 462

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E +K   +M K+  +P  ++    +  L  + +   A E+ N   E+   P   +   +
Sbjct: 463 DEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGAV 522

Query: 402 LVGLRNLGRLSDVRRFAEEMLNR 424
           + GLR  G+LS+      EM+ +
Sbjct: 523 MHGLRREGKLSEACDLTREMVEK 545


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 144/316 (45%), Gaps = 9/316 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+ T  S+ + +C   ++ EAV   D M   G   +VV  N++++ +C+  +  +    F
Sbjct: 673 SIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVF 732

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
               KK +  D  ++  L+ G    G   +A +   +MV+R + +P +V+ +   + T +
Sbjct: 733 YCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKR-KIDP-NVIFFTALIDTFV 790

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           +   + EA    + M   +  P +  +++ ++          A  ++D +MV  G FPD 
Sbjct: 791 KEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFD-LMVSKGCFPDV 849

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TYN +     K+KRV +  K F EM             T I     A +  +A +++N 
Sbjct: 850 VTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNR 909

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFY 441
           +++ G+ P   + N LL  L N G++       E++    ++  I+ Y + +  L +   
Sbjct: 910 MVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRT-- 967

Query: 442 NESRSMRDIFDSLERR 457
           ++ +    +F SL R+
Sbjct: 968 DKLKEAWCLFRSLTRK 983



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 148/334 (44%), Gaps = 14/334 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y++ +++    +  R     + + ++MK     S+ TF S+   +C   +  +A     +
Sbjct: 107 YSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVIL 166

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M   G E +VV  N+L+  +C+   + + ALE LN + KK +  D  ++  LL G    G
Sbjct: 167 MVKSGYEPNVVVYNTLIDGLCKN-GELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSG 225

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
              +A +   +M++R   NP+ V+ +   +   ++   +DEA +  + M   +  P    
Sbjct: 226 RWSDAARMLRDMMKR-SINPD-VVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVT 283

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +++ ++ L        A + +D +M   G FP+ +TYN +     K + V E  K F  M
Sbjct: 284 YNSIINGLCMHGRLYDAKKTFD-LMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRM 342

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
               +        T I       +  +A++I+ +++   + P   +   LL GL   G +
Sbjct: 343 SCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEI 402

Query: 412 S------DVRRFAEEMLNRRILIYEVTMHKLKKA 439
                  D  R +E+ +   I+ Y + +H L KA
Sbjct: 403 ESALVKFDDMRESEKYIG--IVAYNIMIHGLCKA 434



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/364 (20%), Positives = 147/364 (40%), Gaps = 39/364 (10%)

Query: 108  GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
            G R S      +++   +  RF++  + V  M   G V ++  + ++ +  C     + A
Sbjct: 669  GFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNA 728

Query: 167  VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
            +  F  M   G+  D V  N+L+S +      T  A    + VK+ +DP+   F  L++ 
Sbjct: 729  LEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDT 788

Query: 227  WEKEGNVEEANKTFGEMVER------FEWNP---------------------------EH 253
            + KEGN+ EA   + EM+ R      F +N                              
Sbjct: 789  FVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPD 848

Query: 254  VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
            V+ Y T +    + K+V++ +K    M  +        ++  +    +      A ++++
Sbjct: 849  VVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFN 908

Query: 314  IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
              MV  G  PD +TYN++ +CL  N ++ +      ++ K+E     +     I  L   
Sbjct: 909  -RMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRT 967

Query: 374  DEPEIAIEIWNYILENGILPLEASANELLVGL--RNLGRLSD--VRRFAEEMLNRRILIY 429
            D+ + A  ++  +   G+ P   +   ++ GL  + L R +D   RR  E+       IY
Sbjct: 968  DKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIY 1027

Query: 430  EVTM 433
            + T+
Sbjct: 1028 DETL 1031



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 135/311 (43%), Gaps = 8/311 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++D L KNG        +  M++ G+ + + T+ ++    C +G++ +A      M
Sbjct: 178 VYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDM 237

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               +  DVV   +L+    +Q N       +   ++  VDP+  ++  ++ G    G +
Sbjct: 238 MKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRL 297

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A KTF  M  +  +   +V+ Y T +    + + VDE +K  + M  E     +  ++
Sbjct: 298 YDAKKTFDLMASKGCF--PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYN 355

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +    ++     A+ ++   MV     PD +T+ ++   L  N  +      F +M +
Sbjct: 356 TLIHGYCQVGKLRVALDIF-CWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRE 414

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           +E     +     I  L  AD+ E A E++  +   G+ P   +   +++GL   G    
Sbjct: 415 SEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGP--- 471

Query: 414 VRRFAEEMLNR 424
            RR A+E++ R
Sbjct: 472 -RREADELIRR 481



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 130/312 (41%), Gaps = 13/312 (4%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     +Y+  +     M ++G+  D+ +   L+   CR  ++ S AL  
Sbjct: 70  SIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRC-SRLSFALSV 128

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +P   +F  LL G+     + +A      MV+   + P +V+ Y T +  L
Sbjct: 129 LGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS-GYEP-NVVVYNTLIDGL 186

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            +  +++ AL+ L  M+ +     +  ++  L  L      + A ++   MM      PD
Sbjct: 187 CKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMK-RSINPD 245

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +T+  + +  +K   + E ++ + EMI++   P  +   + I  L        A + ++
Sbjct: 246 VVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFD 305

Query: 385 YILENGILPLEASANELLVGLRNLGRLSD-----VRRFAEEMLNRRILIYEVTMHKLKKA 439
            +   G  P   + N L+ G     R+ D      +R + E  N  I  Y   +H   + 
Sbjct: 306 LMASKGCFPNVVTYNTLISGFCKF-RMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQV 364

Query: 440 FYNESRSMRDIF 451
              + R   DIF
Sbjct: 365 --GKLRVALDIF 374



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 105/239 (43%), Gaps = 6/239 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  ++DV  K G  ++     + M +  V  +  T+ SI +  C  G+  +A  +FD+M
Sbjct: 248 TFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLM 307

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
           +  G   +VV  N+L+S  C+        ++   R+  +  + D  ++  L+ G+ + G 
Sbjct: 308 ASKGCFPNVVTYNTLISGFCKFR-MVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGK 366

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +  A   F  MV R    P+ ++ +   L  L    +++ AL     M+    +  +  +
Sbjct: 367 LRVALDIFCWMVSR-RVTPD-IITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAY 424

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +  +  L K +    A +L+  + V  G  PD+ TY ++   L KN    E ++    M
Sbjct: 425 NIMIHGLCKADKVEKAWELFCRLPV-EGVKPDARTYTIMILGLCKNGPRREADELIRRM 482



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 55/285 (19%), Positives = 119/285 (41%), Gaps = 5/285 (1%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           K+D+A   F  M        +V    +L+ I +  N+    +   ++++ + +  D  SF
Sbjct: 584 KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKM-NKFDIVIYLYHKMENLGISHDLYSF 642

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            IL+  + +   +  A    G+M+ +  + P  ++   + L    +G +  EA+  +  M
Sbjct: 643 TILIHCFCRCSRLSLALALLGKMM-KLGFRPS-IVTLGSLLNGFCQGNRFQEAVSLVDSM 700

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
            G    P +  ++  ++ L K  D  +A++++  M    G   D++TYN +   L  + R
Sbjct: 701 DGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEK-KGIRADAVTYNTLISGLSNSGR 759

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
             +  +   +M+K +  P  +     I   +       A  ++  ++   ++P   + N 
Sbjct: 760 WTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNS 819

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           L+ G    G L D +   + M+++      VT + L   F    R
Sbjct: 820 LINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKR 864


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 144/342 (42%), Gaps = 45/342 (13%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVR-VMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           G  L+  + N++V+ L K GR E+   A+R + +E+G      TF ++ +  C  G   +
Sbjct: 264 GCELTSVSVNVLVNGLCKEGRIEE---ALRFIYEEEGFCPDQVTFNALVNGLCRTGHIKQ 320

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICR------------------------------- 194
            +   D M   G E DV   NSL+S +C+                               
Sbjct: 321 GLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIG 380

Query: 195 ---QENQTSRALEFLNRV--KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
              +EN    A E L RV   K V PD  +F  L++G     N E A + F EM E+   
Sbjct: 381 TLCKENHVEAATE-LARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEK-GC 438

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
           +P+    Y   + +L   +++ EAL  L+ M+   C   +  ++  +D L K N    A 
Sbjct: 439 DPDE-FTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAE 497

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
            ++D M +  G    S+TYN +   L K+KRV E  +   +MI    +P      T +  
Sbjct: 498 DIFDQMEML-GVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKY 556

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
                + + A +I   +  NG  P   +   L+ GL   GR+
Sbjct: 557 FCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRV 598



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 135/336 (40%), Gaps = 10/336 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDE 165
           +G  L  Y +N ++  L K G  ++    +  M   D   +  T+ ++  + C     + 
Sbjct: 331 KGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEA 390

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A     V++  GV  DV   NSL+  +C   N+   A+E    +K K  DPD  +++IL+
Sbjct: 391 ATELARVLTSKGVLPDVCTFNSLIQGLCLTSNR-EIAMELFEEMKEKGCDPDEFTYSILI 449

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           E    E  ++EA     EM         +V+ Y T +  L +  +V +A      M+   
Sbjct: 450 ESLCSERRLKEALMLLKEM--ELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLG 507

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
              +   ++  ++ L K      A QL D  M+  G  PD  TY  + +   +   +   
Sbjct: 508 VSRSSVTYNTLINGLCKSKRVEEAAQLMD-QMIMEGLKPDKFTYTTMLKYFCQQGDIKRA 566

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
                 M  N  +P  +   T I  L  A   ++A ++   +   G++    + N ++  
Sbjct: 567 ADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQA 626

Query: 405 LRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKL 436
           L    R  +  R   EM+ +     ++ Y++    L
Sbjct: 627 LCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGL 662



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 131/314 (41%), Gaps = 52/314 (16%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++   +      + A+   ++M   G E   V+VN L++ +C+ E +   AL F+  
Sbjct: 236 TFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCK-EGRIEEALRFIYE 294

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRG 267
            +    PD  +F  L+ G  + G++++  +    M+E+ FE +   V  Y + +  L + 
Sbjct: 295 EEGFC-PDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELD---VYTYNSLISGLCKL 350

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            ++DEA++ L  M   +C P    ++  +  L K N    A +L  + +   G  PD  T
Sbjct: 351 GEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARV-LTSKGVLPDVCT 409

Query: 328 YNMIFE--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +N + +  CL  N+                                     EIA+E++  
Sbjct: 410 FNSLIQGLCLTSNR-------------------------------------EIAMELFEE 432

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFY 441
           + E G  P E + + L+  L +  RL +     +EM      R +++Y   +  L K   
Sbjct: 433 MKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKN-- 490

Query: 442 NESRSMRDIFDSLE 455
           N      DIFD +E
Sbjct: 491 NRVGDAEDIFDQME 504



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 144/366 (39%), Gaps = 46/366 (12%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P  + ++L+   DS SSA+  F+WA      S  P  ++ ++  L + G F+ M   +R
Sbjct: 58  SPSQLLDLLRRQPDS-SSALSLFQWASAQPNYSAHPSVFHELLRQLARAGSFDSMLTLLR 116

Query: 138 VMKEDGV-LSLPTFASIFDSYCGA-----------------------GKYDEAVMSFDV- 172
            M    + +   TF    ++Y  +                        ++    +S  V 
Sbjct: 117 QMHSSKIPVDESTFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVK 176

Query: 173 -------------MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
                        M    V  DV   N L+ A+C+        L   +     + PD  +
Sbjct: 177 ANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKT 236

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  L++G+ +E +VE A +    MVE         ++    +  L +  +++EAL+F  +
Sbjct: 237 FTTLMQGFIEEADVEGALRIKELMVE--SGCELTSVSVNVLVNGLCKEGRIEEALRF--I 292

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
            + E   P    F+  ++ L +       +++ D M+   G   D  TYN +   L K  
Sbjct: 293 YEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLE-KGFELDVYTYNSLISGLCKLG 351

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
            + E  +  H M+  + +P  +   T I  L   +  E A E+   +   G+LP   + N
Sbjct: 352 EIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFN 411

Query: 400 ELLVGL 405
            L+ GL
Sbjct: 412 SLIQGL 417



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 1/134 (0%)

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P  +F++ AL +LVK N     V+     MV     PD  T+N++   L K  ++     
Sbjct: 162 PDTRFYNVALSLLVKAN-KLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAIL 220

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
              +M     +P      T +   ++  + E A+ I   ++E+G      S N L+ GL 
Sbjct: 221 MLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLC 280

Query: 407 NLGRLSDVRRFAEE 420
             GR+ +  RF  E
Sbjct: 281 KEGRIEEALRFIYE 294


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 148/315 (46%), Gaps = 14/315 (4%)

Query: 150 FASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           + ++ + Y  +G+++EA  + +  M + G E D    N ++  +C++    S ALEFL+ 
Sbjct: 339 YNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVS-ALEFLDE 397

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            VKK  +P+  ++ IL++G+ K+G+ EEA+K    M  +      + + Y   +  L + 
Sbjct: 398 MVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAK--GLSLNTVGYNCLIGALCKD 455

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            ++ +AL+    M  + C P +  F++ +  L K +    A+ L+  M++  G   +++T
Sbjct: 456 GKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLL-EGVIANTVT 514

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT---AITMLLDADEPEIAIEIWN 384
           YN +    ++ + + + +K   EM    ++  PL+  T    I  L      E  + +  
Sbjct: 515 YNTLIHAFLRLELIQQADKLVGEM---RFRGCPLDNITYNGLIKALCKTGATEKCLGLIE 571

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            +    I P   S N L+      G+++D  +F  +M+ R +    VT + L        
Sbjct: 572 QMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMG 631

Query: 445 RSMR--DIFDSLERR 457
           R     ++F+ L+ +
Sbjct: 632 RFQEALNLFNGLQAK 646



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 134/311 (43%), Gaps = 21/311 (6%)

Query: 97  SAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT--FASI 153
           SA++F      +G   +   + +++D   K G FE+    V  M   G LSL T  +  +
Sbjct: 390 SALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKG-LSLNTVGYNCL 448

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
             + C  GK  +A+  +  MS  G + D+   NSL+  +C+ +        + + + + V
Sbjct: 449 IGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGV 508

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
             +  ++  L+  + +   +++A+K  GEM  RF   P   + Y   +  L +    ++ 
Sbjct: 509 IANTVTYNTLIHAFLRLELIQQADKLVGEM--RFRGCPLDNITYNGLIKALCKTGATEKC 566

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILV-------KLNDSTHAVQLWDIMMVFHGAFPDSL 326
           L  +  M GE  FP++    N+ +IL+       K+ND+   ++     M+  G  PD +
Sbjct: 567 LGLIEQMFGEEIFPSI----NSCNILINSFCRTGKVNDALQFLR----DMIQRGLTPDIV 618

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           TYN +   L K  R  E    F+ +      P  +   T I+          A ++    
Sbjct: 619 TYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKG 678

Query: 387 LENGILPLEAS 397
           + NG +P E +
Sbjct: 679 VSNGFIPNEIT 689



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 127/291 (43%), Gaps = 6/291 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N+M+D L K G        +  M + G   ++ T+  + D +C  G ++EA    + 
Sbjct: 373 FTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNS 432

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           MS  G+  + V  N L+ A+C+ + +   AL+    +  K   PD  +F  L+ G  K  
Sbjct: 433 MSAKGLSLNTVGYNCLIGALCK-DGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKND 491

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +EEA   + +M+   E    + + Y T +   +R + + +A K +  M+   C      
Sbjct: 492 KMEEALGLYRDML--LEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNIT 549

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +  L K   +   + L +  M     FP   + N++     +  +V++  +F  +M
Sbjct: 550 YNGLIKALCKTGATEKCLGLIE-QMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDM 608

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           I+    P  +   + I  L      + A+ ++N +   GI P   + N L+
Sbjct: 609 IQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLI 659



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 150/350 (42%), Gaps = 13/350 (3%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP  + ++L+L  D P+S +D F  AG  RG   S + + L++D LG  G F+ +   ++
Sbjct: 60  TPSQLCKLLELPLDVPTS-MDLFEKAGLQRGYIHSFHVYYLLIDKLGNVGEFKMIDKLLK 118

Query: 138 VMKEDG-VLSLPTFASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
            MK++G V     F  I   Y  AG   +A  +  D+  ++  E    + N +L  +   
Sbjct: 119 QMKDEGCVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLEILVAG 178

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                    F + + + + P   +F ++++ +     V+ A     +M +     P  ++
Sbjct: 179 NCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKH-GCVPNSII 237

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y+  +  L    +V+EA+K L  M    C P ++ F++ +  L K      A +L D M
Sbjct: 238 -YQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRM 296

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           ++      D+L    +   L +  +V E       M+     P  +   T I   + +  
Sbjct: 297 LL-RDFTADALIQGYLMHGLCRMGKVDEAR----AMLSKIPNPNTVLYNTLINGYVVSGR 351

Query: 376 PEIAIE-IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            E A + ++  ++  G  P   + N ++ GL   G L     F +EM+ +
Sbjct: 352 FEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKK 401



 Score = 45.8 bits (107), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 82/215 (38%), Gaps = 2/215 (0%)

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F +++  + K G   +A +   +M   + + P    +Y   L  L+ G     A      
Sbjct: 132 FILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTFK-SYNVVLEILVAGNCPKVAPNVFYD 190

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M      PT+  F   +     +N+   A  L   M   HG  P+S+ Y M+   L +N 
Sbjct: 191 MLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTK-HGCVPNSIIYQMLIHALSENN 249

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           RV+E  K   EM     +P        I  L  A     A ++ + +L            
Sbjct: 250 RVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQG 309

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
            L+ GL  +G++ + R    ++ N   ++Y   ++
Sbjct: 310 YLMHGLCRMGKVDEARAMLSKIPNPNTVLYNTLIN 344


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 138/282 (48%), Gaps = 9/282 (3%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSF--DVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           ++ TF ++ + +C  G   +A M+F  D+M+  G   D  +  SL++ +C+   QT  AL
Sbjct: 124 NMVTFNTLINGFCINGMVSKA-MAFRLDLMA-KGYPLDEFSYGSLINGLCKN-GQTRDAL 180

Query: 204 EFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           + L ++++ +V P+  +++ +++G  K+  + +A + F  +  R       V+AY + + 
Sbjct: 181 QLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGIL--VDVVAYNSLIH 238

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
                 Q  EA + L +M   N  P    F+  +D L K      A  ++ +MM   G  
Sbjct: 239 GCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMK-RGEK 297

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           PD +TYN + E    +  V E  + F+ M+K   +P  LN    I      D  + A+ +
Sbjct: 298 PDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVL 357

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           +  I    ++P  A+ N L+ GL  LGR+S V+   +EM +R
Sbjct: 358 FKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDR 399



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 140/324 (43%), Gaps = 40/324 (12%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
            +G  L  +++  +++ L KNG+       ++ M+ED V  +L T++++ D  C      
Sbjct: 153 AKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIA 212

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLL----------------------------------- 189
           +A+  F +++  G+  DVVA NSL+                                   
Sbjct: 213 DALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILV 272

Query: 190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
            A+C++         F   +K+   PD  ++  L+EG+    NV EA + F  MV+R   
Sbjct: 273 DALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKR-GL 331

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
            P+ VL Y   +    +   VDEA+   + ++ +N  P L  +++ +D L KL   +   
Sbjct: 332 EPD-VLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQ 390

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           +L D  M   G  PD +TYN+  +   K+K   +    F ++++  W P        +  
Sbjct: 391 ELVD-EMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQGIW-PDFYMYDVIVEN 448

Query: 370 LLDADEPEIAIEIWNYILENGILP 393
               ++ +IA E   ++L +G  P
Sbjct: 449 FCKGEKLKIAEEALQHLLIHGCCP 472



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 134/292 (45%), Gaps = 21/292 (7%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++VD L K GR  +      VM + G    + T+ ++ + +C +    EA   F+ 
Sbjct: 266 YTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNR 325

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEG 231
           M   G+E DV+  N L++  C+ +      + F   R K +V P+  ++  L++G  K G
Sbjct: 326 MVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLV-PNLATYNSLIDGLCKLG 384

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +    +   EM +R + +P+ ++ Y  FL    + K  ++A+   R +  +  +P    
Sbjct: 385 RMSCVQELVDEMCDRGQ-SPD-IVTYNIFLDAFCKSKPYEKAISLFRQIV-QGIWPDFYM 441

Query: 292 FSNALDILV-------KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           +    D++V       KL  +  A+Q     ++ HG  P+  TY ++   L K+    E 
Sbjct: 442 Y----DVIVENFCKGEKLKIAEEALQ----HLLIHGCCPNVRTYTIMINALCKDCSFDEA 493

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
                +M  N+  P  +   T I  L + +E + A ++   ++E G++  EA
Sbjct: 494 MTLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERGLVNDEA 545



 Score = 41.6 bits (96), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 32/153 (20%), Positives = 68/153 (44%), Gaps = 2/153 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RGQ      +N+ +D   K+  +E+  +  R + +        +  I +++C   K   A
Sbjct: 399 RGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQGIWPDFYMYDVIVENFCKGEKLKIA 458

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
             +   + +HG   +V     +++A+C+ +     A+  L+++      PD  +F  ++ 
Sbjct: 459 EEALQHLLIHGCCPNVRTYTIMINALCK-DCSFDEAMTLLSKMDDNDCPPDAVTFETIIG 517

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
             ++    ++A K   EM+ER   N E  L +E
Sbjct: 518 ALQERNETDKAEKLRLEMIERGLVNDEARLVHE 550


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 143/320 (44%), Gaps = 9/320 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP--TFASIFDSYCGAGKYDE 165
           G+R+ PYA+N ++++L   GR +          +DG+ S    +F  +    C  G + +
Sbjct: 177 GRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQK 236

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAIL 223
           A+   + M+  G   D +  N L+  +CR + Q +R  + L R+++  +  P+  ++  +
Sbjct: 237 ALELVERMTEFGCSPDTITHNILVDGLCRAK-QVNRGHDLLRRLQRDGVCMPNVVTYTSV 295

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G+ K G +E+A   + +M+E       + + Y   +    +   ++ A++  R +   
Sbjct: 296 ISGYCKAGRMEDALSVYNDMLE--SGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILR 353

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
            C P +  FS+ +D   +      A+++W  M   H   P+  T+++I   L K  R  E
Sbjct: 354 RCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHH-IQPNVYTFSIIIHSLCKQNRSAE 412

Query: 344 VEKFFHEM-IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
              F  E+ ++ +  P        I +L    + E A  I   + E G  P + +   L+
Sbjct: 413 ALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILI 472

Query: 403 VGLRNLGRLSDVRRFAEEML 422
           +G    GR+ +      +M+
Sbjct: 473 IGHCMKGRIPEAITLFHKMV 492



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 123/263 (46%), Gaps = 6/263 (2%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           N++VD L +  +  +  + +R ++ DGV   ++ T+ S+   YC AG+ ++A+  ++ M 
Sbjct: 257 NILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDML 316

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   + V  N L++   +  +  S    +   + +   PD  +F+ L++G+ + G ++
Sbjct: 317 ESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLD 376

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFS 293
           +A + + EM +     P +V  +   + +L +  +  EAL FLR +    +  P    ++
Sbjct: 377 DAMRIWKEMGQH-HIQP-NVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYN 434

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +DIL K      A  L    M   G  PD  TY ++        R+ E    FH+M++
Sbjct: 435 PVIDILCKGGQVEEA-NLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVE 493

Query: 354 NEWQPTPLNCATAITMLLDADEP 376
              +P  +   + I+ +L A  P
Sbjct: 494 TGCRPDKITVNSFISCVLKAGMP 516



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 142/342 (41%), Gaps = 60/342 (17%)

Query: 112 SPYAWNLMVDVLGKNGR-------FEQMWNAVRVMKEDGVLSLPTFASIFDSYC-GAGKY 163
           S  +++ ++ +L ++GR       F+QM +      + G L    F S     C  AG  
Sbjct: 110 SEQSYSHVITLLCRSGRHRDALKLFDQMTD------QSGYLPDAVFFSFVAGSCTNAGLL 163

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSA-ICRQENQTSRALEFLNRVK-KIVDPDGDSFA 221
           D AV      S  G   +  A N+LL+  I R   Q + AL F + ++  +  PDG SF 
Sbjct: 164 DAAVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVAL-FESWIQDGLYSPDGWSFN 222

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           ++++G  + GN ++A +    M E F  +P+  + +   +  L R KQV+     LR ++
Sbjct: 223 VVIKGVCRVGNFQKALELVERMTE-FGCSPD-TITHNILVDGLCRAKQVNRGHDLLRRLQ 280

Query: 282 GEN-CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
            +  C P +  +++ +    K      A+ +++ M+   G  P+++TYN++     K   
Sbjct: 281 RDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLE-SGTRPNTVTYNVLINGYGK--- 336

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
                                           A + E A+ ++  ++     P   + + 
Sbjct: 337 --------------------------------ALDMESAVRMYRQLILRRCPPDVVTFSS 364

Query: 401 LLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKK 438
           L+ G    G+L D  R  +EM    +   +  + + +H L K
Sbjct: 365 LIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCK 406


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 144/340 (42%), Gaps = 5/340 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RG   S  ++N ++  LGK  + ++       MK+D   +  T+  I D  C AGK +EA
Sbjct: 351 RGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEA 410

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
            M  D M   G+  +++ VN ++  +C+ +        F    ++  +P+  ++  L++G
Sbjct: 411 YMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDG 470

Query: 227 WEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
             K+GNV++A + F  M++     NP   + Y + +       + ++  K  + M    C
Sbjct: 471 LGKKGNVDDAYRLFENMLDTGHNANP---VVYTSLIRNFFMHGRKEDGHKIFKEMNRRGC 527

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P L   +  +D + K  D      +++ +  + G  PD  +Y+++   L K  +  E  
Sbjct: 528 QPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGY-GFLPDVRSYSILIHGLTKAGQARETS 586

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             FH M +  +          +     + + + A E+   +    + P  A+   ++ GL
Sbjct: 587 SIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGL 646

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             + RL +     EE  ++ I +  +    L   F    R
Sbjct: 647 AKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGR 686



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 146/347 (42%), Gaps = 9/347 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+ +++  + +  + E+    +R M+E G  + +P F ++  +    G+ + A+   D +
Sbjct: 184 AYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEV 243

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
               +E D+V  N  +    +  N    A +F + +K + + PD  S+  ++    K G 
Sbjct: 244 KGSCLEPDIVLYNVCIDCFGKAGN-VDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGR 302

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + EA + FG+M    E       AY T ++      Q + A K L  +K   C P++  F
Sbjct: 303 LSEAEELFGQM--ETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSF 360

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           ++ L  L K      A+ L++ M     A P+S TYN+I + L    +V E      EM 
Sbjct: 361 NSILTCLGKKRKVDEALTLFEAMK--KDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEME 418

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P  L     +  L  A + E A E++    + G  P   +   L+ GL   G + 
Sbjct: 419 HAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVD 478

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERR 457
           D  R  E ML+       V    L + F+   R      IF  + RR
Sbjct: 479 DAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRR 525



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 130/292 (44%), Gaps = 9/292 (3%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+H + +      +S++ F     +G  L   A+N +VD   K+G+ ++ +  +  MK  
Sbjct: 572 LIHGLTKAGQARETSSI-FHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVK 630

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
            V  ++ T+ SI D      + DEA M F+     G+E +V+  +SL+    +       
Sbjct: 631 RVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEA 690

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
            L     +KK + P+  ++  L++   K   + EA   F  M E  + +P +   Y   +
Sbjct: 691 YLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKE-MKCSP-NTYTYSILI 748

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             L R ++ ++A  F + M+ +   P +  ++  +  L K+ + T A  L++     +G 
Sbjct: 749 NGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKA-NGG 807

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
            PD+ ++N + E +    R  E    F E      +   +N    I+ LLDA
Sbjct: 808 TPDAASFNALIEGMSHANRAIEAYHVFEE---TRLKGCRINVKACIS-LLDA 855



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 84/415 (20%), Positives = 168/415 (40%), Gaps = 52/415 (12%)

Query: 45  DAPYISSSARIICEILAHASS--------DDIESALACTGIIPTPDLVHEVLQLSYDSPS 96
           DA   SS+  II ++L  A          D++E A     ++    +V  + +     P 
Sbjct: 386 DAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEP- 444

Query: 97  SAVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIF 154
            A + F  A  RG   +   +  ++D LGK G  +  +     M + G  + P  + S+ 
Sbjct: 445 -AYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLI 503

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIV 213
            ++   G+ ++    F  M+  G + D+  +N+ +  + +  + +  RA+ F +      
Sbjct: 504 RNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAI-FEDIKGYGF 562

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDE 272
            PD  S++IL+ G  K G   E +  F  M ++ F  +     AY   +    +  ++D+
Sbjct: 563 LPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDAR---AYNAVVDGFCKSGKLDK 619

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD------------------- 313
           A + L  MK +   PT+  + + +D L K++    A  L++                   
Sbjct: 620 AYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLID 679

Query: 314 -------------IM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
                        I+  M+  G  P+  T+N + + L+K + ++E    F  M + +  P
Sbjct: 680 GFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSP 739

Query: 359 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
                +  I  L    +   A   W  + + G++P   +   ++ GL  +G ++D
Sbjct: 740 NTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITD 794



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 84/194 (43%), Gaps = 7/194 (3%)

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +++A +    M  R ++ P    AY   +  +   +Q + AL+ LR M+       +  F
Sbjct: 163 LDDAERVIAAM-RRLKFRPAFS-AYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLF 220

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEKFFHE 350
           +  +  L +      A+ L D +    G+   PD + YN+  +C  K   V    KFFHE
Sbjct: 221 TTLVRALAREGRVEGALALVDEV---KGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHE 277

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           +     +P  ++  + I +L  A     A E++  +     +P   + N +++G  + G+
Sbjct: 278 LKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQ 337

Query: 411 LSDVRRFAEEMLNR 424
             +  +  +++  R
Sbjct: 338 FENAYKLLDQLKER 351



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 20/220 (9%)

Query: 96  SSAVDFFRWAGR------------GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           SS +D F   GR             + L+P  Y WN ++D L K     +     + MKE
Sbjct: 675 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKE 734

Query: 142 DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
                +  T++ + +  C   KY++A + +  M   G+  +VV   ++++ + +  N T 
Sbjct: 735 MKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITD 794

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
               F         PD  SF  L+EG        EA   F E   R +    +V A  + 
Sbjct: 795 ACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEET--RLKGCRINVKACISL 852

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
           L  L + + +++A     V  GEN       ++  LD+L+
Sbjct: 853 LDALNKAECLEQAAV---VGFGENTVRHFFQWTEGLDLLL 889


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 144/316 (45%), Gaps = 9/316 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+ T  S+ + +C   ++ EAV   D M   G   +VV  N++++ +C+  +  +    F
Sbjct: 148 SIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVF 207

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
               KK +  D  ++  L+ G    G   +A +   +MV+R + +P +V+ +   + T +
Sbjct: 208 YCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKR-KIDP-NVIFFTALIDTFV 265

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           +   + EA    + M   +  P +  +++ ++          A  ++D +MV  G FPD 
Sbjct: 266 KEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFD-LMVSKGCFPDV 324

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TYN +     K+KRV +  K F EM             T I     A +  +A +++N 
Sbjct: 325 VTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNR 384

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFY 441
           +++ G+ P   + N LL  L N G++       E++    ++  I+ Y + +  L +   
Sbjct: 385 MVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRT-- 442

Query: 442 NESRSMRDIFDSLERR 457
           ++ +    +F SL R+
Sbjct: 443 DKLKEAWCLFRSLTRK 458



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 149/365 (40%), Gaps = 41/365 (11%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           G R S      +++   +  RF++  + V  M   G V ++  + ++ +  C     + A
Sbjct: 144 GFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNA 203

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +  F  M   G+  D V  N+L+S +      T  A    + VK+ +DP+   F  L++ 
Sbjct: 204 LEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDT 263

Query: 227 WEKEGNVEEANKTFGEMVER------FEWN----------------------------PE 252
           + KEGN+ EA   + EM+ R      F +N                            P+
Sbjct: 264 FVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPD 323

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            V+ Y T +    + K+V++ +K    M  +        ++  +    +      A +++
Sbjct: 324 -VVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVF 382

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
           +  MV  G  PD +TYN++ +CL  N ++ +      ++ K+E     +     I  L  
Sbjct: 383 N-RMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCR 441

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGL--RNLGRLSD--VRRFAEEMLNRRILI 428
            D+ + A  ++  +   G+ P   +   ++ GL  + L R +D   RR  E+       I
Sbjct: 442 TDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERI 501

Query: 429 YEVTM 433
           Y+ T+
Sbjct: 502 YDETL 506



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 55/285 (19%), Positives = 119/285 (41%), Gaps = 5/285 (1%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           K+D+A   F  M        +V    +L+ I +  N+    +   ++++ + +  D  SF
Sbjct: 59  KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKM-NKFDIVIYLYHKMENLGISHDLYSF 117

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            IL+  + +   +  A    G+M+ +  + P  ++   + L    +G +  EA+  +  M
Sbjct: 118 TILIHCFCRCSRLSLALALLGKMM-KLGFRPS-IVTLGSLLNGFCQGNRFQEAVSLVDSM 175

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
            G    P +  ++  ++ L K  D  +A++++  M    G   D++TYN +   L  + R
Sbjct: 176 DGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEK-KGIRADAVTYNTLISGLSNSGR 234

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
             +  +   +M+K +  P  +     I   +       A  ++  ++   ++P   + N 
Sbjct: 235 WTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNS 294

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           L+ G    G L D +   + M+++      VT + L   F    R
Sbjct: 295 LINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKR 339


>gi|255660908|gb|ACU25623.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 481

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 134/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  +   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-SAKTSEHALQFFRWVERSNLFEHBRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + ++L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKLFQKMEELGVERTLKSYDALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P    F +L+ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRXXFNVLIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 XEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYLAPT 289



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 5/221 (2%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL-AYETFLIT 263
            L+  KK ++ D D + ++++ + K+G V+E+ K F +M E      E  L +Y+     
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKLFQKMEE---LGVERTLKSYDALFKV 124

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           ++R  +   A ++   M  E   PT   F N L     L+        +   M      P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRXXF-NVLIWGFFLSGKVETANRFFEDMKSREISP 183

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+ + 
Sbjct: 184 DVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLX 243

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 244 EEMKGFGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDK 284


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 152/338 (44%), Gaps = 23/338 (6%)

Query: 60  LAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFR--WAGRGQRLSPYAWN 117
           LAHA  D          ++    L++ + +L      +A D FR   A  G R + + +N
Sbjct: 89  LAHAQPD----------VVSYTTLINGLCKLG--RVDAAFDLFRKMVAAGGCRPNAFTYN 136

Query: 118 LMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
            +VD L K  R +     +    K D    + T+ ++  +    G+ DEA+ +F  M+  
Sbjct: 137 ALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEE 196

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEE 235
           G    +V+ N++++ +CR   + + ALE  N  + +   P+  +++++++G  K   ++E
Sbjct: 197 GYVPTLVSFNAIITGLCRAR-RLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDE 255

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A +    MV   E     ++AY   ++      ++D AL  LR M  + C P +  ++  
Sbjct: 256 AQQLLDRMVS--EGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVV 313

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           +D L K+     A +++   +V +   P+ +TY+ +     +  RV E  K   EM    
Sbjct: 314 IDKLCKVGRVDDAHEIFR-ELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM---A 369

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            +P  +   T I  L   D  E A  ++  + E G +P
Sbjct: 370 CRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVP 407



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 128/296 (43%), Gaps = 9/296 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  +   +C A   D A      M + G++ +    + +L  +CR   + ++ALE  + 
Sbjct: 27  TYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRC-GRVAQALEHFDA 85

Query: 209 VKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
             ++    PD  S+  L+ G  K G V+ A   F +MV      P +   Y   +  L +
Sbjct: 86  SLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRP-NAFTYNALVDGLCK 144

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
             ++D A   +   +  +  P +  ++  +  L +L     A+  +   M   G  P  +
Sbjct: 145 QDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATF-TQMTEEGYVPTLV 203

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           ++N I   L + +R+ +  + F+EMI  ++ P  +  +  I  L  +D+ + A ++ + +
Sbjct: 204 SFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRM 263

Query: 387 LENGILPLEASANELLVGLRNLGRLSD----VRRFAEEMLNRRILIYEVTMHKLKK 438
           +  G  P   +   L++G    GRL      +RR   +     ++ Y V + KL K
Sbjct: 264 VSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCK 319



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 9/227 (3%)

Query: 219 SFAILLEGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALK-F 276
           ++ +L+ G+    +++ A     EM VE  + N          L  L R  +V +AL+ F
Sbjct: 27  TYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTT---SIILQGLCRCGRVAQALEHF 83

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
              ++  +  P +  ++  ++ L KL     A  L+  M+   G  P++ TYN + + L 
Sbjct: 84  DASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLC 143

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           K  R+        E  K ++ P  +   T +  L      + A+  +  + E G +P   
Sbjct: 144 KQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLV 203

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKKA 439
           S N ++ GL    RL+D      EM++R     ++ Y V +  L K+
Sbjct: 204 SFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKS 250


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 165/370 (44%), Gaps = 41/370 (11%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEA 166
           G  L+ Y  N+MV+ L K+G+F+ + + +  M+ +G+ + + T+ ++  +YC  G  +EA
Sbjct: 113 GIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEA 172

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
               + M+  G++  +   N++++ +C++  + +RA   L  +  I + PD  ++  LL 
Sbjct: 173 FEIMNSMADKGLKPSLFTYNAIINGLCKK-GRYARAKGILIEMLNIGLSPDTTTYNTLLV 231

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG--- 282
              +  N  EA + FGEM+ R    P+ ++++ + +    R + +D+AL + R MK    
Sbjct: 232 ESCRRDNFSEAKEIFGEML-RQGVVPD-LVSFSSLIAVFSRNRHLDQALVYFRDMKKFGL 289

Query: 283 --------------------------------ENCFPTLKFFSNALDILVKLNDSTHAVQ 310
                                           + C   +  ++  L+ L K    T A +
Sbjct: 290 VPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADK 349

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           L+D  MV  GA PD  T+  +     ++  + +    F  M +   +P  +   T I   
Sbjct: 350 LFD-EMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGF 408

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
               E E A E+W+ ++   I P   +   L+    ++G +S+  R  + M+ + I    
Sbjct: 409 CKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTL 468

Query: 431 VTMHKLKKAF 440
           VT + + K +
Sbjct: 469 VTCNTVIKGY 478



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 142/313 (45%), Gaps = 4/313 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +++ ++ V  +N   +Q     R MK+ G++     +  +   YC  G   EA+   D M
Sbjct: 260 SFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEM 319

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   DV+A N++L+ +C+++  T     F   V++   PD  +F  L+ G  ++GN+
Sbjct: 320 LEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNM 379

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A   FG M +R    P+ ++AY T +    +  ++++A +    M     FP    + 
Sbjct: 380 TKALSLFGTMTQR-NIKPD-IVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYG 437

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             ++    +   + A +LWD+ M+  G  P  +T N + +   ++    + ++F   MI 
Sbjct: 438 ILINAYCSVGHVSEAFRLWDV-MIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIA 496

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               P  ++  T I   +  D  + A    N + + G+LP   + N ++ G    GR+ +
Sbjct: 497 KGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQE 556

Query: 414 VRRFAEEMLNRRI 426
                 +M+ + I
Sbjct: 557 AELVLRKMIEKGI 569



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 143/341 (41%), Gaps = 6/341 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           A +G + S + +N +++ L K GR+ +    +  M   G+     T+ ++    C    +
Sbjct: 180 ADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNF 239

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            EA   F  M   GV  D+V+ +SL++   R      +AL +   +KK  + PD   + +
Sbjct: 240 SEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNR-HLDQALVYFRDMKKFGLVPDNVIYTV 298

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+ + GN+ EA K   EM+E  +     V+AY T L  L + K + +A K    M  
Sbjct: 299 LMHGYCRNGNMLEALKIRDEMLE--QGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVE 356

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
               P    F+  +    +  + T A+ L+  M       PD + YN + +   K   + 
Sbjct: 357 RGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQ-RNIKPDIVAYNTLIDGFCKVGEME 415

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +  + +  MI  +  P  +     I           A  +W+ ++E GI P   + N ++
Sbjct: 416 KASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVI 475

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
            G    G  S    F   M+ + +    ++ + L   F  E
Sbjct: 476 KGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVRE 516



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 163/406 (40%), Gaps = 45/406 (11%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSS---AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQ 131
           G   T +LV ++L  +Y          + FR    +G  +S  A N ++  L K    E 
Sbjct: 42  GNCGTNNLVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVEL 101

Query: 132 MWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
            W   R +   G+ L++ T   + ++ C  GK+D+       M  +G+  D+V  N+L+ 
Sbjct: 102 AWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIG 161

Query: 191 AICRQENQTSRALEFLN----------------------------RVKKI--------VD 214
           A CR E     A E +N                            R K I        + 
Sbjct: 162 AYCR-EGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLS 220

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  ++  LL    +  N  EA + FGEM+ R    P+ ++++ + +    R + +D+AL
Sbjct: 221 PDTTTYNTLLVESCRRDNFSEAKEIFGEML-RQGVVPD-LVSFSSLIAVFSRNRHLDQAL 278

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
            + R MK     P    ++  +    +  +   A+++ D M+   G   D + YN I   
Sbjct: 279 VYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLE-QGCVLDVIAYNTILNG 337

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L K K + + +K F EM++    P      T I           A+ ++  + +  I P 
Sbjct: 338 LCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPD 397

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
             + N L+ G   +G +       + M++R+I    +T   L  A+
Sbjct: 398 IVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAY 443



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 132/323 (40%), Gaps = 9/323 (2%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG----RGQRLSPYAWNLMVDVLGKNGRFEQ 131
           G++P  ++++ VL   Y    + ++  +       +G  L   A+N +++ L K      
Sbjct: 288 GLVP-DNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTD 346

Query: 132 MWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
                  M E G L    TF ++   +C  G   +A+  F  M+   ++ D+VA N+L+ 
Sbjct: 347 ADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLID 406

Query: 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
             C+       +  +   + + + P+  ++ IL+  +   G+V EA + +  M+E+    
Sbjct: 407 GFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEK-GIK 465

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P  V    T +    R     +A +FL  M  +   P    ++  ++  V+  D+     
Sbjct: 466 PTLVTC-NTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVR-EDNMDKAF 523

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           LW   M   G  PD +TYN++     +  R+ E E    +MI+    P        I   
Sbjct: 524 LWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGH 583

Query: 371 LDADEPEIAIEIWNYILENGILP 393
           +  D    A    + +L+ G  P
Sbjct: 584 VTQDNLNEAFRFHDEMLQRGFAP 606


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/351 (19%), Positives = 164/351 (46%), Gaps = 8/351 (2%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           T  ++ + L  + DS +    F ++   G  +  Y  +++++ L K+G+       ++ +
Sbjct: 122 TYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSL 181

Query: 140 KEDGVLSLPT---FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
              G++  PT   + ++ + YC  G+ + A  +F  M    ++ D +  N+L++ +C+ E
Sbjct: 182 VNAGLV--PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAE 239

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
             T+     +      V+P  ++F  L++ + + G +E+      EM E     P +V++
Sbjct: 240 RITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQEN-GLKP-NVVS 297

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           Y + +    +  ++ EA+  L  M  ++  P  + ++  +D  V+   +  A  L +  M
Sbjct: 298 YGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVE-KM 356

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
             +G  P  +TYN++ + L    ++ E E+  + +  +   P  ++  T I+        
Sbjct: 357 KSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNI 416

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           + A+++   + + GI     + ++L+ GL   GRL+++    ++M+   ++
Sbjct: 417 DKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVV 467



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 140/332 (42%), Gaps = 10/332 (3%)

Query: 101 FFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
             R  GR     P  +++N+++  + + GR          M E  VL +  T+ ++ D +
Sbjct: 1   MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGH 60

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDP 215
              G  +      D M  HG++ + +  N LLS +CR  +  +TS  L+ +   K +  P
Sbjct: 61  IKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMV--P 118

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           DG +++IL +G  + G+ +     FG+ ++      ++  +    L  L +  +V  A +
Sbjct: 119 DGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCS--ILLNGLCKDGKVSIAEE 176

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
            L+ +      PT   ++  ++   +  +   A   +  M   H   PD +TYN +   L
Sbjct: 177 VLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH-IKPDHITYNALINGL 235

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
            K +R+   +    EM  N   PT     T I       + E    + + + ENG+ P  
Sbjct: 236 CKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNV 295

Query: 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
            S   ++      G++ +     ++M ++ +L
Sbjct: 296 VSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 327



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 139/343 (40%), Gaps = 24/343 (6%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWN-----AVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           G + +   +N+++  L + GR  +        A + M  DG     T++ +FD     G 
Sbjct: 80  GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGF----TYSILFDGLSRNGD 135

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFA 221
               +  F     +GV       + LL+ +C+ + + S A E L   V   + P    + 
Sbjct: 136 SKAMLSLFGKYLKNGVTIGDYTCSILLNGLCK-DGKVSIAEEVLQSLVNAGLVPTRVIYN 194

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+ G+ + G +E A  TFG+M  R    P+H+  Y   +  L + +++  A   L  M+
Sbjct: 195 TLINGYCQTGELEGAFSTFGQMKSR-HIKPDHI-TYNALINGLCKAERITNAQDLLMEMQ 252

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF-----HGAFPDSLTYNMIFECLI 336
                PT++ F+  +D   +        QL    +V      +G  P+ ++Y  I     
Sbjct: 253 DNGVNPTVETFNTLIDAYGRTG------QLEKCFIVLSEMQENGLKPNVVSYGSIVNAFC 306

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           KN ++ E      +M   +  P        I   ++    + A  +   +  NGI P   
Sbjct: 307 KNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIV 366

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
           + N L+ GL N  ++S+       + N R++   V+ + L  A
Sbjct: 367 TYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISA 409



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 7/229 (3%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  S+ +++ G  + G   +A + F EM ER    P H+  Y T +   I+G  ++   
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVL-PNHI-TYNTMIDGHIKGGDLEAGF 70

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           +    M      P    ++  L  L +         L D  M      PD  TY+++F+ 
Sbjct: 71  RLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLD-EMASQKMVPDGFTYSILFDG 129

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L +N     +   F + +KN        C+  +  L    +  IA E+   ++  G++P 
Sbjct: 130 LSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPT 189

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKA 439
               N L+ G    G L        +M +R I    + Y   ++ L KA
Sbjct: 190 RVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKA 238



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/312 (18%), Positives = 140/312 (44%), Gaps = 15/312 (4%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSP 113
           +C+    + ++++  +L   G++PT  +++  L   Y         F   G  + + + P
Sbjct: 165 LCKDGKVSIAEEVLQSLVNAGLVPT-RVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKP 223

Query: 114 --YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
               +N +++ L K  R     + +  M+++GV  ++ TF ++ D+Y   G+ ++  +  
Sbjct: 224 DHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVL 283

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEK 229
             M  +G++ +VV+  S+++A C+   +   A+  L+ +  K V P+   +  +++ + +
Sbjct: 284 SEMQENGLKPNVVSYGSIVNAFCKN-GKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVE 342

Query: 230 EGNVEEANKTFGEMVERFEWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            G  ++A      +VE+ + N     ++ Y   +  L    Q+ EA + +  +      P
Sbjct: 343 HGPNDQAFI----LVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 398

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
               ++  +       +   A+ L   M  + G      TY+ +   L    R++E+E  
Sbjct: 399 DAVSYNTLISACCYRGNIDKALDLQQRMHKY-GIKSTVRTYHQLISGLGGAGRLNEMEYL 457

Query: 348 FHEMIKNEWQPT 359
           + +M++N   P+
Sbjct: 458 YQKMMQNNVVPS 469



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/190 (20%), Positives = 79/190 (41%), Gaps = 1/190 (0%)

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P +  +Y   +  + R  +  +A++    M      P    ++  +D  +K  D     +
Sbjct: 12  PPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFR 71

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           L D  MV HG  P+++TYN++   L +  R+ E      EM   +  P     +     L
Sbjct: 72  LRD-QMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 130

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
               + +  + ++   L+NG+   + + + LL GL   G++S      + ++N  ++   
Sbjct: 131 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 190

Query: 431 VTMHKLKKAF 440
           V  + L   +
Sbjct: 191 VIYNTLINGY 200


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 163/378 (43%), Gaps = 25/378 (6%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           Y     A D F   A +GQ  + +++ +M++     G    M +   +M  DG+   + T
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYT 396

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +  +Y   G  D+A++ F+ M  HGV+ DVV   ++++A+CR         +F   +
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + V PD  ++  L++G+   G++ +A +   E++     N  H       L  +     
Sbjct: 457 DQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMN----NGMH-------LDIVFFSSI 505

Query: 270 VDEALKFLRVMKGENCF---------PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           ++   K  RVM  +N F         PT   +S  +D    +     A++++D  MV  G
Sbjct: 506 INNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFD-AMVSAG 564

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             P+ + Y  +     K  R+ E    F EM++   +P+ +     I  L +A     A 
Sbjct: 565 IEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAK 624

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
             ++ + E+GI   + + N +L GL       +     +E+    + I  +T++ +    
Sbjct: 625 VKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGM 684

Query: 441 YNESR--SMRDIFDSLER 456
           +   R    +D+F S+ R
Sbjct: 685 FQTRRVEEAKDLFASISR 702



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/435 (19%), Positives = 169/435 (38%), Gaps = 60/435 (13%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLV--HEVLQLSYDSP--SSAVDFFR-WAGRGQR 110
           +C+      +DD+   +A  G + +PD+V    V+   +     + A D F+    RG  
Sbjct: 192 LCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIP 251

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAV 167
                ++ +V  L K    ++    +R M   GVL  P   T+ ++   Y   G++ EAV
Sbjct: 252 PDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL--PNNWTYNNLIYGYSSTGQWKEAV 309

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
             F  M  H +  DVV ++ L+ ++C+          F     K  +P+  S+ I+L G+
Sbjct: 310 RVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGY 369

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
             +G + +    F  M+   +     +  +   +        +D+A+     M+     P
Sbjct: 370 ATKGCLVDMTDLFDLMLG--DGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 427

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE--C----------- 334
            +  +   +  L ++     A++ ++  M+  G  PD   Y+ + +  C           
Sbjct: 428 DVVTYRTVIAALCRIGKMDDAMEKFN-QMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKEL 486

Query: 335 ----------------------LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
                                 L K  RV + +  F   +     PT    A   +ML+D
Sbjct: 487 ISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPT----AVVYSMLMD 542

Query: 373 A----DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI-- 426
                 + E A+ +++ ++  GI P +     L+ G   +GR+ +      EML + I  
Sbjct: 543 GYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 602

Query: 427 --LIYEVTMHKLKKA 439
             ++Y + +  L +A
Sbjct: 603 STILYNIIIDGLFEA 617



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 117/276 (42%), Gaps = 16/276 (5%)

Query: 190 SAICRQENQTSRALEFLNRVK------KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           SA CR  +  + A+   NR        +++ P   ++AIL++   +    E A   FG++
Sbjct: 80  SAACR--SGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQL 137

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKL 302
           + R       ++A    L      K+ DEAL  L     E  C P +  +S  L  L   
Sbjct: 138 L-RTGLRVNIIIA-NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQ 195

Query: 303 NDSTHAVQLWDIMMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
             S  A  L   MM   GA   PD + Y+ + +   K   V++    F EM++    P  
Sbjct: 196 GKSGQADDLLR-MMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDF 254

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 420
           +  ++ +  L  A   + A      ++  G+LP   + N L+ G  + G+  +  R  +E
Sbjct: 255 VTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 314

Query: 421 MLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSL 454
           M    IL   VT+  L  +   Y + +  RD+FD++
Sbjct: 315 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM 350



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/355 (19%), Positives = 140/355 (39%), Gaps = 43/355 (12%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G  ++P  Y +N+++      G  ++       M++ GV   + T+ ++  + C  GK D
Sbjct: 387 GDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 446

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT---------------------SRAL 203
           +A+  F+ M   GV  D  A + L+   C   +                       S  +
Sbjct: 447 DAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSII 506

Query: 204 EFLNRVKKIVD--------------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
             L ++ +++D              P    +++L++G+   G +E+A + F  MV     
Sbjct: 507 NNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSA-GI 565

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA- 308
            P  V+ Y T +    +  ++DE L   R M  +   P+   ++  +D L +   +  A 
Sbjct: 566 EPNDVV-YGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAK 624

Query: 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 368
           V+  +  M   G   +  TYN++   L KN+   E    F E+     +   +   T I 
Sbjct: 625 VKFHE--MTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIA 682

Query: 369 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
            +      E A +++  I  +G++P   + + ++  L   G + +       M N
Sbjct: 683 GMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQN 737



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 104/271 (38%), Gaps = 8/271 (2%)

Query: 43  HLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY---DSPSSAV 99
           HLD  + SS    +C++     + +I       G+ PT  +V+ +L   Y        A+
Sbjct: 496 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTA-VVYSMLMDGYCLVGKMEKAL 554

Query: 100 DFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
             F      G   +   +  +V+   K GR ++  +  R M + G+  S   +  I D  
Sbjct: 555 RVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 614

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
             AG+   A + F  M+  G+  +    N +L  + +          F       V  + 
Sbjct: 615 FEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINI 674

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +   ++ G  +   VEEA   F   + R    P  V+ Y   +  LI+   V+EA    
Sbjct: 675 ITLNTMIAGMFQTRRVEEAKDLFAS-ISRSGLVP-CVVTYSIMITNLIKEGLVEEAEDMF 732

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             M+   C P  +  ++ +  L+K N+   A
Sbjct: 733 SSMQNAGCEPDSRLLNHVVRELLKKNEIVRA 763


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 127/257 (49%), Gaps = 11/257 (4%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSY 157
           F +   RG R     ++ ++D L K GR ++  +    M + G   +P   T+ S+   +
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGS-CMPNTVTYNSLISGF 170

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPD 216
           C  GK DEA+   + M+  G   DVV   +L++  C+   +   A + LN++ +K + P+
Sbjct: 171 CRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLA-RLDDAYDLLNQMTRKGLTPN 229

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +F  L++G  +E  + +A    GEM  R   +P  V  Y T L    R  Q++EA KF
Sbjct: 230 VVTFTSLMDGLCRENRLSDAVHILGEM-RRKSCSPT-VYTYNTILDGYCRVNQLEEARKF 287

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
           +  ++  +C P +  F+  +  L K+N S+ A++L +         PD + Y  + + L 
Sbjct: 288 M--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRR-CNPDVVMYTTVIDVLC 344

Query: 337 KNKRVHEVEKFFHEMIK 353
           + K+V E  + + +M++
Sbjct: 345 REKKVDEACRVYRKMLE 361



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 125/311 (40%), Gaps = 11/311 (3%)

Query: 122 VLGKNGRFEQMWNAVR-----VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           V G + R  Q W   R     V   + V +  T+ S+    C A +  EA    + M   
Sbjct: 24  VHGSHRRALQRWPGRRGCGAAVQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYS 83

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G   D+    +L++  C+ +        F   V +   PD  +++ L++G  KEG ++EA
Sbjct: 84  GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 143

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
              FG M++     P  V  Y + +    R  ++DEA+  L  M      P +  ++  +
Sbjct: 144 IDLFGRMIKSGSCMPNTV-TYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLM 202

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
           +   KL     A  L +  M   G  P+ +T+  + + L +  R+ +      EM +   
Sbjct: 203 NGFCKLARLDDAYDLLN-QMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSC 261

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE-ASANELLVGLRNLGRLSDVR 415
            PT     T +      ++ E   E   ++LE    P    S N ++ GL  + R S+  
Sbjct: 262 SPTVYTYNTILDGYCRVNQLE---EARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAM 318

Query: 416 RFAEEMLNRRI 426
              EE   RR 
Sbjct: 319 ELVEEARRRRC 329



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 115/238 (48%), Gaps = 13/238 (5%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFAS 152
           A+D F    +     P    +N ++    + G+ ++  N +  M E G  S P   T+ +
Sbjct: 143 AIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETG--SSPDVVTYTT 200

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-K 211
           + + +C   + D+A    + M+  G+  +VV   SL+  +CR EN+ S A+  L  ++ K
Sbjct: 201 LMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCR-ENRLSDAVHILGEMRRK 259

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
              P   ++  +L+G+ +   +EEA K    M+E  +  P +V+++   +  L +  +  
Sbjct: 260 SCSPTVYTYNTILDGYCRVNQLEEARKF---MLEEMDC-PPNVVSFNIMIRGLCKVNRSS 315

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           EA++ +   +   C P +  ++  +D+L +      A +++  M+   G  P+S+TY+
Sbjct: 316 EAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYS 373


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 129/294 (43%), Gaps = 9/294 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F+R    G + S   +N ++D L    +F+ +      MK DG+ L++ T+  +  + C 
Sbjct: 131 FYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCK 190

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             + D A      MS  G   D V+  +++S++CR   +   A E   R+K  V      
Sbjct: 191 NDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRL-GKVEEARELSMRIKSFVP----V 245

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  L+ G+ +E  +EE  + F EM    E     V+ Y T + TL     V+ AL  L  
Sbjct: 246 YNALINGFCREHKMEEVFELFNEMA--VEGIDPDVITYSTVINTLSEMGNVEMALAVLAK 303

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M    C P +  F++ +           A+ LW+  M+  G+ P+++ YN +   L    
Sbjct: 304 MFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWN-RMIQEGSEPNTVAYNTLIHGLCSYG 362

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           ++ E      +M +N   P     +T I     A +   A EIWN ++ NG LP
Sbjct: 363 KMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLP 416



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 138/334 (41%), Gaps = 9/334 (2%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A+D + R    G   +  A+N ++  L   G+  +  +  + M+ +GV  +  T++++ D
Sbjct: 332 ALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLID 391

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVD 214
            +  AG    A   ++ M  +G   +VV    ++  +CR  +  + AL  + N       
Sbjct: 392 GFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRN-SMFNHALHLIENMANGNCP 450

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  +F   ++G    G  E A K   +M  ++   P +V  Y   L  L   K+  EAL
Sbjct: 451 PNTITFNTFIKGLCCSGKTEWAMKVLNQM-RQYGCAP-NVTTYNEVLDGLFNAKRTREAL 508

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           + +  ++       L  ++  L           A+Q+   ++V  G  PDS+TYN +   
Sbjct: 509 QIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLV-GGTKPDSITYNTVIYA 567

Query: 335 LIKNKRVHEVEKFFHEMI-KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
             K   V    +    +  K E  P      + +  + +    + A+   + ++  GI P
Sbjct: 568 YCKQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICP 627

Query: 394 LEASANELLVGL-RNLGRLSDVRRFAEEMLNRRI 426
             A+ N L+ GL   LG L  +      + N ++
Sbjct: 628 NRATWNALVRGLFSKLGHLGPIHIVDNILANGKV 661



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 133/360 (36%), Gaps = 52/360 (14%)

Query: 86  EVLQLSYDSPSS--AVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           EVL    + P+   A+ FF+          +P  +  M+  LG     + +   +++MK 
Sbjct: 42  EVLNKLKNEPNILLALHFFKSIANSNSFKHTPLTYTTMIKRLGYERDIDGIQYLLQLMKL 101

Query: 142 DGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
           +G+  +   F  + ++Y  AG  ++A+ +F  +   G +  V   N +L A+   EN+  
Sbjct: 102 EGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDAL-LSENK-- 158

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
              + +N +   +  DG                              E N   V  Y   
Sbjct: 159 --FQMINGIYNNMKRDG-----------------------------IELN---VYTYNML 184

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           L  L +  +VD A K L  M  + C P    ++  +  + +L     A +L    M    
Sbjct: 185 LKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEAREL---SMRIKS 241

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             P    YN +     +  ++ EV + F+EM      P  +  +T I  L +    E+A+
Sbjct: 242 FVP---VYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMAL 298

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDV----RRFAEEMLNRRILIYEVTMHKL 436
            +   +   G  P   +   L+ G    GRL +      R  +E      + Y   +H L
Sbjct: 299 AVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGL 358


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 6/247 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           QR+SP    +N ++  L K    ++    +  M + GV+    T+ SI   +C +G+  E
Sbjct: 110 QRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKE 169

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A++    M   GVE DVV  NSL+  +C+    T     F +  K+ + PD  ++  LL+
Sbjct: 170 AIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQ 229

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    + ++V+EA+     M+ +  
Sbjct: 230 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILVCAYAKQEKVEEAMLVFSKMRQQGL 287

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    +   +D+L K      A+  ++  M+  G  PDS+ YN +   L    +  + E
Sbjct: 288 NPNAVTYGTVIDVLCKSGRVEDAMLYFE-QMIDEGLRPDSIVYNSLIHSLCIFDKWEKAE 346

Query: 346 KFFHEMI 352
           + F EM+
Sbjct: 347 ELFLEML 353



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 147/349 (42%), Gaps = 17/349 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N++++ L    R ++    + +M +DG    P   +++++ + +   G  D+     
Sbjct: 52  FSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDK----- 106

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M    +  +VV  NS+++A+C+ +    +A+E L   VK  V PD  ++  ++ G+  
Sbjct: 107 --MLDQRISPNVVTYNSIIAALCKAQT-VDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCS 163

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G  +EA     +M  R +     V+ Y + +  L +  +  EA K    M      P +
Sbjct: 164 SGQPKEAIVFLKKM--RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDI 221

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             +   L              L D +MV +G  P+   ++++     K ++V E    F 
Sbjct: 222 TTYGTLLQGYATKGALVEMHGLLD-LMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFS 280

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           +M +    P  +   T I +L  +   E A+  +  +++ G+ P     N L+  L    
Sbjct: 281 KMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFD 340

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD--IFDSLER 456
           +         EML+R I +  +  + +  +   E R +    +FD + R
Sbjct: 341 KWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVR 389



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 13/193 (6%)

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK--GENCFPTLKF 291
           E+A   F E++ R       V +Y   L  L    +  EAL+ L +M   G +C P +  
Sbjct: 34  EDARHVFDELLRR---GIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVS 90

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S  ++   K  D           M+     P+ +TYN I   L K + V +  +    M
Sbjct: 91  YSTVINGFFKEGDLDK--------MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTM 142

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +K+   P  +   + +     + +P+ AI     +  +G+ P   + N L+  L   GR 
Sbjct: 143 VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRC 202

Query: 412 SDVRRFAEEMLNR 424
           ++ R+  + M  R
Sbjct: 203 TEARKIFDSMTKR 215



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 108/269 (40%), Gaps = 56/269 (20%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD----- 218
           ++A   FD +   G+  DV + N LL+ +C  EN++  ALE L+    + D  GD     
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLC-DENRSQEALELLH---IMADDGGDCPPDV 88

Query: 219 -SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            S++ ++ G+ KEG++++       + +R   N   V+ Y + +  L + + VD+A++ L
Sbjct: 89  VSYSTVINGFFKEGDLDKM------LDQRISPN---VVTYNSIIAALCKAQTVDKAMEVL 139

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M                                    V  G  PD +TYN I      
Sbjct: 140 TTM------------------------------------VKSGVMPDCMTYNSIVHGFCS 163

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
           + +  E   F  +M  +  +P  +   + +  L        A +I++ + + G+ P   +
Sbjct: 164 SGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITT 223

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
              LL G    G L ++    + M+   I
Sbjct: 224 YGTLLQGYATKGALVEMHGLLDLMVRNGI 252


>gi|255660946|gb|ACU25642.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 484

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 136/288 (47%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQM 132
           ++P+ D  LV+ VL     +   A+ FFRW  R      +    + ++++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-GAKNXEHALQFFRWVERSNLFEHNRETHHKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY  AG   E+V  F  M   GVE+ + + ++L   
Sbjct: 65  RCILLDMPKKGLEWDEDLWVLLIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + +  +P   +F I++ G+   G VE AN+ F +M  R E  P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGNEPTRHTFNIMIWGFFLSGKVETANRFFEDMKSR-EIMP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMIXGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM++    PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAQKMSEARSILKEMVEKYITPT 289



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 11/226 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + +L++ + K G V+E+ K F +M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDEDLWVLLIDSYGKAGIVQESVKLFQKMEELGVER------TIKSYDAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGNEPTRHTF-NIMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D  + A+
Sbjct: 181 IMPDVVTYNTMIXGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            +   +   GI P   + + LL GL N  ++S+ R   +EM+ + I
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAQKMSEARSILKEMVEKYI 286



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 83/181 (45%), Gaps = 23/181 (12%)

Query: 135 AVRVMKEDGVLSLPT----FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV------- 183
           A  V+K    LS+PT    +  + ++YC AG+YD+AV   D +    +E+D++       
Sbjct: 310 AADVLKAMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDRL----IEKDIILRPQSTL 365

Query: 184 -----AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
                A N L+  +C    QT++A   + ++ K+   D  +   L+ G  +EG+ + A +
Sbjct: 366 HLEPSAYNPLIEYLC-NNGQTAKAESLVRQLMKLGVQDPTALNALIRGHSQEGSPDSAFE 424

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
               M+ R   + +   AY++ + + ++  +  +A   L  M      P    F + ++ 
Sbjct: 425 LLKIMLRRKARSEKS--AYDSLVQSYLKKSEPADAKAALDSMIENGHLPDPALFRSVMES 482

Query: 299 L 299
           L
Sbjct: 483 L 483


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 140/317 (44%), Gaps = 14/317 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
            +  +++ L   GR ++   AV +  E    D + +  TF  + D  C  G   EA   F
Sbjct: 158 TFTTLINGLCNEGRIKE---AVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVF 214

Query: 171 DVMSMHGVEQDVVAVNSLLSAIC-RQE-NQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
           + M+  GVE ++   N+L++  C R E N  S+  E +  V K   P   S++IL+ G+ 
Sbjct: 215 ETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIM--VGKGCAPSVHSYSILINGYC 272

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K   ++EA     +M E+ E  P  V  Y T +  L     + EA +  + M      P 
Sbjct: 273 KSRRIDEAKALLTQMSEK-ELIPNTV-TYNTLMQGLCHASSLLEAQELFKKMCSSGMLPN 330

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           L+ +S  LD L K      A++L   M       PD + YN++ + +    ++   ++ F
Sbjct: 331 LRTYSILLDGLCKHGHLEEALKLLTSMQE-RKLEPDIVLYNILIQGMFIAGKLEVAKELF 389

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            ++  N  +P+       I  LL     + A +++  + ++G LP   S N ++ G    
Sbjct: 390 SKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQN 449

Query: 409 GRLSDVRRFAEEMLNRR 425
              S   +  +EM+ RR
Sbjct: 450 QDPSTAIQLIDEMVGRR 466


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 140/353 (39%), Gaps = 50/353 (14%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-----------SLPTFASIFDSYCGAGKY 163
            +N++VD L K GR ++       MK  G++            + TF  + D+ C  GK 
Sbjct: 217 TYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKV 276

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
            EA     VM   G+  D+V  NSL+   C   +  S    F++   K  +PD  S+ +L
Sbjct: 277 IEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVL 336

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G+ K   VEEA K + EM+        +V+ Y++ L  +    +VD+A K   VMK  
Sbjct: 337 INGYSKTLKVEEAMKLYNEML--LVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKA- 393

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
                                              HG   +S TY +  + L KN  + E
Sbjct: 394 -----------------------------------HGIAENSYTYGIFLDGLCKNDCLFE 418

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
             K F E+  + ++    N    I  L  A + E A E++  +   G  P   +   ++ 
Sbjct: 419 AMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIH 478

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
           G    G++       ++M         +T + L + FY ES  + ++   L R
Sbjct: 479 GFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFY-ESNKLEEVVQLLHR 530



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 148/345 (42%), Gaps = 19/345 (5%)

Query: 94  SPSSAVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFA 151
           + + A+ FF    R     S  ++N ++  L K   + Q+++    M+  G+ S   T  
Sbjct: 49  TATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLN 108

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
            + +  C   +  E   +F  +   G   ++V  N+L+  +C  E++ S A     R++K
Sbjct: 109 ILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLC-MEHRISEATRLFLRMQK 167

Query: 212 I-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM---VERFEWNPE-HVLAYETFLITLIR 266
           +   PD  ++  L++G    GN+  A K   EM   + R+E N + +V+ Y   +  L +
Sbjct: 168 LGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCK 227

Query: 267 GKQVDEALKFLRVMKGENCFPT----------LKFFSNALDILVKLNDSTHAVQLWDIMM 316
             + DEA +    MK +   P           +  F+  +D L K      A +L  + M
Sbjct: 228 VGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGV-M 286

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
           +  G  PD +TYN + E       ++   + F  M     +P  ++    I       + 
Sbjct: 287 IESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKV 346

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           E A++++N +L  G  P   + + LL G+   G++ D ++    M
Sbjct: 347 EEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVM 391


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 123/268 (45%), Gaps = 11/268 (4%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G++ DVV  N+L+ A+CR     +  L       + V PD  +F  L++G+ +EG+
Sbjct: 80  MGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGS 139

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPT 288
           +E A +    M+E          A +  +  LI G     +V++AL +++    +   P 
Sbjct: 140 IEAALRVKARMLEM------GCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPD 193

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
              ++  ++ L + +   HA+++ D+M V  G  PD  TYN++  CL KN ++ E +   
Sbjct: 194 QITYNTFVNGLCQNDHVGHALKVMDVM-VQEGHDPDVFTYNIVVNCLCKNGQLEEAKGIL 252

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
           ++M+     P      T I  L   +  E A+++   +   G+ P   + N L+  L  +
Sbjct: 253 NQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKV 312

Query: 409 GRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           G      R  EEM N      EVT + L
Sbjct: 313 GDPHLALRLFEEMKNSGCTPDEVTYNTL 340



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 122/248 (49%), Gaps = 9/248 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++D L   G+  +  + ++ M+  G   S  T+ +I D  C   + +EA   FD M
Sbjct: 336 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 395

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
            + G+ ++ +  N+L+  +C+ + +   A E +N+ + + + P+  ++  +L  + K+G+
Sbjct: 396 DLQGISRNAITFNTLIDGLCK-DKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGD 454

Query: 233 VEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           +++A      M    FE +   V+ Y T +  L +  +   ALK LR M+ +   PT K 
Sbjct: 455 IKKAADILETMTANGFEVD---VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKA 511

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR-VHEVEKFFHE 350
           ++  L  L + N+   A+ L+  M    G  PD+LTY ++F  L +    + E   F  E
Sbjct: 512 YNPVLQSLFRRNNIRDALSLFREMAEV-GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLE 570

Query: 351 MIKNEWQP 358
           M+   + P
Sbjct: 571 MVDKGFIP 578



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 6/298 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N  V+ L +N         + VM ++G    + T+  + +  C  G+ +EA    + M
Sbjct: 196 TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 255

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G   D+   N+L++A+C   N+   AL+   +V  K V PD  +F IL+    K G+
Sbjct: 256 VDRGCLPDITTFNTLIAALCTG-NRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGD 314

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
              A + F EM +     P+ V  Y T +  L    ++ +AL  L+ M+   C  +   +
Sbjct: 315 PHLALRLFEEM-KNSGCTPDEV-TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITY 372

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +D L K      A +++D  M   G   +++T+N + + L K+K++ +  +  ++MI
Sbjct: 373 NTIIDGLCKKMRIEEAEEVFD-QMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMI 431

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
               QP  +   + +T      + + A +I   +  NG      +   L+ GL   GR
Sbjct: 432 SEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGR 489



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 139/309 (44%), Gaps = 7/309 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           T   + + YC  G+ ++A+         G E D +  N+ ++ +C Q +    AL+ ++ 
Sbjct: 161 TVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLC-QNDHVGHALKVMDV 219

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V++  DPD  ++ I++    K G +EEA     +MV+R    P+ +  + T +  L  G
Sbjct: 220 MVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDR-GCLPD-ITTFNTLIAALCTG 277

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +++EAL   R +  +   P +  F+  ++ L K+ D   A++L++  M   G  PD +T
Sbjct: 278 NRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE-EMKNSGCTPDEVT 336

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN + + L    ++ +      +M       + +   T I  L      E A E+++ + 
Sbjct: 337 YNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMD 396

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES--R 445
             GI     + N L+ GL    ++ D      +M++  +    +T + +   +  +   +
Sbjct: 397 LQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIK 456

Query: 446 SMRDIFDSL 454
              DI +++
Sbjct: 457 KAADILETM 465



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 144/348 (41%), Gaps = 40/348 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N++V+ L KNG+ E+    +  M + G L  + TF ++  + C   + +EA+     
Sbjct: 230 FTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQ 289

Query: 173 MSMHGVEQDVVAVNSLLSAICR-----------QENQTS--------------------- 200
           +++ GV  DV   N L++A+C+           +E + S                     
Sbjct: 290 VTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK 349

Query: 201 --RALEFLNRVKKIVDPDGD-SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             +AL+ L  ++    P    ++  +++G  K+  +EEA + F +M    +    + + +
Sbjct: 350 LGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM--DLQGISRNAITF 407

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
            T +  L + K++D+A + +  M  E   P    +++ L    K  D   A  + + M  
Sbjct: 408 NTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTA 467

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
            +G   D +TY  +   L K  R     K    M     +PTP      +  L   +   
Sbjct: 468 -NGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIR 526

Query: 378 IAIEIWNYILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNR 424
            A+ ++  + E G  P   +   +  GL R  G + +   F  EM+++
Sbjct: 527 DALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDK 574


>gi|10177952|dbj|BAB11311.1| unnamed protein product [Arabidopsis thaliana]
          Length = 680

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 157/357 (43%), Gaps = 7/357 (1%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGK 125
           I+ +L+  GI  + D+V +VL     S  + V FF WA R  G      ++++++  LG+
Sbjct: 104 IQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWAVREPGVTKDVGSYSVILRALGR 163

Query: 126 NGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
              F  M + ++ M  +GV   L       DS+        A+  F+     GV+    +
Sbjct: 164 RKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHYVRRAIELFEESESFGVKCSTES 223

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
            N+LL  +C + +  S A    N  K  +  D  S+ I++ GW K G VEE  K   EMV
Sbjct: 224 FNALLRCLC-ERSHVSAAKSVFNAKKGNIPFDSCSYNIMISGWSKLGEVEEMEKVLKEMV 282

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           E   + P+  L+Y   +  L R  +++++++    +K +   P    ++  +   +   D
Sbjct: 283 ES-GFGPD-CLSYSHLIEGLGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISARD 340

Query: 305 STHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
              +++ +   M+     P+  TY+ +   LIK ++V +  + F EM+     PT     
Sbjct: 341 FDESMRYYR-RMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGVLPTTGLVT 399

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           + +  L     P  A+ I+    + G    E++   LL  L   G+   +    +EM
Sbjct: 400 SFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEM 456


>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 15/353 (4%)

Query: 98  AVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A++F R A  R  R+    ++ +V    + GR ++    V  M   G +  + T+ S+ +
Sbjct: 329 ALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVIN 388

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD- 214
             C   K D+A      M  HG + + V+  +LL+ +C+  N    A E +N  ++  D 
Sbjct: 389 GLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLE-AREMMNMSEE--DW 445

Query: 215 --PDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVD 271
             P+  ++++L+ G+ +EG   EA     EM+++ F   P  +      + +L + ++VD
Sbjct: 446 WIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEI---NLLIQSLCQEEKVD 502

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           EA +F+       C   +  F+  +    + +D   A+ L D M       PD +TY  I
Sbjct: 503 EAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDM-YLSNKHPDVVTYTTI 561

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
            + L K  R+ E  K   +M++    PTP+   T I         E  +++   +L    
Sbjct: 562 IDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLLEKMLSRQ- 620

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
                + N+++  L + G L    +   ++L     I   T H L +++ ++ 
Sbjct: 621 -ECRTAYNQVIEKLCSFGNLEQAYKLLGKVLRTASKIDANTCHMLIESYLSKG 672



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 168/404 (41%), Gaps = 43/404 (10%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P  V  VLQL  D    A+ FF WA R  R    P  +  M+++L K    +     +R+
Sbjct: 101 PRQVCAVLQLQTDE-RVALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRL 159

Query: 139 MKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M +  +   P  F  +  SY  AGK   A+    +M   G+E D+   N+ +  +    N
Sbjct: 160 MAKRRIERRPEAFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLV-MGN 218

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +  +A+ FL R++ + ++P+  ++  L++G+     +E+A +   EM   F+      ++
Sbjct: 219 RLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMP--FKGCSPDKIS 276

Query: 257 YETFLITLIRGKQVDEA-LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW--- 312
           Y T +  L + K++ E  L   +++K  N  P    ++  + +L K      A++     
Sbjct: 277 YYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREA 336

Query: 313 -----------------------------DIM--MVFHGAFPDSLTYNMIFECLIKNKRV 341
                                        +I+  M   G  PD +TY  +   L + ++V
Sbjct: 337 EERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKV 396

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            + +K   +M K+  +P  ++    +  L        A E+ N   E+  +P   + + L
Sbjct: 397 DQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVL 456

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           + G R  G+ S+      EM+ +      V ++ L ++   E +
Sbjct: 457 MHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEK 500


>gi|297745567|emb|CBI40732.3| unnamed protein product [Vitis vinifera]
          Length = 520

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 173/412 (41%), Gaps = 14/412 (3%)

Query: 16  IIPSSSSTTTSP--TSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALA 73
           ++P   +T+ S   T ++P    + R      +P        I  +   A+   IE AL 
Sbjct: 27  LLPICCNTSISKPFTENSPKEQLKTRAVDGFLSPGEKLRGVFIQRLRGKAA---IELALT 83

Query: 74  CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY---AWNLMVDVLGKNGRFE 130
             GI  T D+V EV+        + V FF WA + Q   P     +N+++  LG+    E
Sbjct: 84  NVGIDLTIDIVSEVINRGNLGGEAMVIFFNWAVK-QPTIPKDVDTYNVIIKALGRRKFIE 142

Query: 131 QMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
            +   ++ M   G+  +  T + + DS+  A +  +A+  F  +   G + D  ++N LL
Sbjct: 143 FVVKVLKDMHIQGISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTESLNVLL 202

Query: 190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
             +C Q +    A  F N +K  +  +  ++ I++ GW K G + E  +    MV    +
Sbjct: 203 QCLC-QRSHVGAANLFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMVAD-GF 260

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
           +P + L +   +  L R  ++D+A++    M+   C P    ++  +   +   D    +
Sbjct: 261 SP-NCLTFSHLIEGLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRDFDECL 319

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           + ++  MV     P+  TY  +    +K ++V +  +   EM+     PT     + I  
Sbjct: 320 KYYN-FMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITSFIEP 378

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           L     P  A+ I+    + G     ++   LL+ L   G+   +    +EM
Sbjct: 379 LCQYGPPHAAMMIYKKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWDEM 430



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 51/258 (19%), Positives = 110/258 (42%), Gaps = 20/258 (7%)

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-----IVDPDGDSFAILLEGWEKEGN 232
           + +DV   N ++ A+ R+     + +EF+ +V K      + P+ ++ +I+++ + K   
Sbjct: 121 IPKDVDTYNVIIKALGRR-----KFIEFVVKVLKDMHIQGISPNYETLSIVMDSFIKARQ 175

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE---NCFPTL 289
           V +A + F  + E F    +   +    L  L +   V  A  F   MKG    NC  T 
Sbjct: 176 VSKAIEMFRNL-EEFGGKCD-TESLNVLLQCLCQRSHVGAANLFFNAMKGGIPFNCM-TY 232

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
                      K+ +    ++     MV  G  P+ LT++ + E L +  R+ +  + FH
Sbjct: 233 NIIIGGWSKYGKIGEMERCLK----AMVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFH 288

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
            M +    P        I+  +   + +  ++ +N+++ +   P   +  +L+V      
Sbjct: 289 HMEETGCVPNACVYNALISNFISTRDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKAR 348

Query: 410 RLSDVRRFAEEMLNRRIL 427
           +++D     +EM+ R ++
Sbjct: 349 KVADALEMLDEMVGRGMI 366


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 144/344 (41%), Gaps = 47/344 (13%)

Query: 78  IPTPDLVHEVLQLSYDSPSSAVD------FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQ 131
           +PTP+ VH  + ++    S  +D      + +    G R   + +N ++  L K G    
Sbjct: 339 VPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGS 398

Query: 132 MWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
             + V  M  +G   +L T+ ++ D +C   + +EA    + MS  G E +++  N LL 
Sbjct: 399 AVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLR 458

Query: 191 AICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
           A+C+   +  +AL+ L  +  K   PD  +F  L+ G  K    E+A   + +M+   + 
Sbjct: 459 ALCKN-GKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDML--LDG 515

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
              + + Y T +   +RG  + EALK +                         ND     
Sbjct: 516 VIANTVTYNTLIHAFLRGGAIQEALKLV-------------------------ND----- 545

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
                 M+F G   D +TYN + +   K     +    F EM++ +  P+ ++C   I  
Sbjct: 546 ------MLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLING 599

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           L    +   A+E+   ++  G+ P   + N L+ GL  +G + +
Sbjct: 600 LCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIRE 643



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 89/416 (21%), Positives = 165/416 (39%), Gaps = 16/416 (3%)

Query: 52  SARIICEILAHASSDDIES----ALACTGIIPTP---DLVHEVLQLSYDSPSSAVDFFRW 104
           S  ++ +IL  A+   + +     +   G+IPT     +V + L +  +  ++       
Sbjct: 175 SYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDM 234

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
              G   +   +  ++  L K  R  +    +  M   G L  + TF  +    C   + 
Sbjct: 235 TKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRI 294

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
            E     D M   G   + +    L++ +CR   +   A   LN+V     P+   F IL
Sbjct: 295 HEGAKLVDRMLFRGFTPNDITYGVLMNGLCRV-GKVDEAQVLLNKVPT---PNDVHFTIL 350

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G+ K G ++EAN    + + +    P+ V  + T +  L +   +  A+  +  M   
Sbjct: 351 INGYVKSGRLDEANAFLYDKMIKNGCRPD-VFTFNTLIHGLCKKGLMGSAVDMVNDMSAN 409

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
            C P L  ++  LD   K N    A  + + M    G   + + YN++   L KN +V +
Sbjct: 410 GCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSA-KGFELNIMGYNVLLRALCKNGKVPK 468

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
                 EM     +P      T I  L   D  E A+ ++  +L +G++    + N L+ 
Sbjct: 469 ALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIH 528

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSLERR 457
                G + +  +   +ML R   + E+T + L KAF     +     +FD + R+
Sbjct: 529 AFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRK 584



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 148/335 (44%), Gaps = 20/335 (5%)

Query: 96  SSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFAS 152
           S+++  F+WAG  +G   +   +++++D LG    F+ +   +  +KE+G+      F  
Sbjct: 83  STSMAIFQWAGSQKGYCHTFDVYHVLIDKLGAAKEFKVIDKLLLQIKEEGIAFRESLFIC 142

Query: 153 IFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
           I   Y  A    +A  M  D+  ++  E    + N +L  +      +  A  F   + K
Sbjct: 143 IMKYYGRANLPGQATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSK 202

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            V P   +F ++++       V+ A     +M +     P  V+ Y+T +  L +  +V+
Sbjct: 203 GVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKH-GCVPNSVV-YQTLIHALSKRDRVN 260

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           EALK L  M    C P +  F++ +  L +LN      +L D  M+F G  P+ +TY ++
Sbjct: 261 EALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVD-RMLFRGFTPNDITYGVL 319

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE-----IWNYI 386
              L +  +V E +   +++      PTP +     T+L++       ++     +++ +
Sbjct: 320 MNGLCRVGKVDEAQVLLNKV------PTPND--VHFTILINGYVKSGRLDEANAFLYDKM 371

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           ++NG  P   + N L+ GL   G +        +M
Sbjct: 372 IKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDM 406



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 114/281 (40%), Gaps = 43/281 (15%)

Query: 150 FASIFDSYCGAGKYDEA-VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           F  + + Y  +G+ DEA    +D M  +G   DV   N+L+  +C++    S A++ +N 
Sbjct: 347 FTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGS-AVDMVND 405

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIR 266
           +      P+  ++  LL+G+ K+  +EEA     EM  + FE N   ++ Y   L  L +
Sbjct: 406 MSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELN---IMGYNVLLRALCK 462

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
             +V +AL                      D+L +++D               G  PD  
Sbjct: 463 NGKVPKAL----------------------DMLGEMSDK--------------GCKPDIF 486

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           T+N +   L K  R  +    + +M+ +      +   T I   L     + A+++ N +
Sbjct: 487 TFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDM 546

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           L  G    E + N L+     LG         +EM+ + ++
Sbjct: 547 LFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLV 587



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 1/120 (0%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S  + NL+++ L + G+       +R M   G+   + T+ S+ +  C  G   EA   F
Sbjct: 589 SNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLF 648

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           + +   G++ D +  N+L+   CR        L  L  V+    P+  ++ IL+  + KE
Sbjct: 649 NKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNFIKE 708


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 143/343 (41%), Gaps = 3/343 (0%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   +G   S  A+N ++  LGK  R E+       MK D V ++PT+  + D  C  GK
Sbjct: 115 RQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGK 174

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            + A+   D M   G+  +V+ VN ++  +C+ +        F     K+  P+  +F+ 
Sbjct: 175 LNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSS 234

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  K G V++A   + +M++    +    + Y + + +  +  + ++  K  + M  
Sbjct: 235 LIDGLGKCGRVDDAYSLYEKMLDC--GHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVH 292

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
             C P L   +  +D + K  ++     L+  +   HG  PD+ +Y+++   L+K    +
Sbjct: 293 TGCSPDLTLINTYMDCVFKAGETEKGRALFREINA-HGFIPDARSYSILIHGLVKAGLAN 351

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E  + F+ M +             I     + +   A ++   +   G  P   +   ++
Sbjct: 352 ETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVI 411

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            GL  + RL +     EE  +  I +  V    L   F    R
Sbjct: 412 DGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGR 454



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 112/261 (42%), Gaps = 4/261 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            + ++   Y  AGK+DEA    +     G    V+A N +L+ + ++  +   AL     
Sbjct: 92  AYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKR-RVEEALRIFEE 150

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +K+   P+  ++ IL++   +EG +  A +   +M ER    P +VL     +  L + +
Sbjct: 151 MKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDM-ERAGLFP-NVLTVNIMIDRLCKAQ 208

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +++EA      M  + C P    FS+ +D L K      A  L++ M+   G  P ++ Y
Sbjct: 209 KLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDC-GHVPGAIVY 267

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
             +     K  R  +  K + EM+     P      T +  +  A E E    ++  I  
Sbjct: 268 TSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINA 327

Query: 389 NGILPLEASANELLVGLRNLG 409
           +G +P   S + L+ GL   G
Sbjct: 328 HGFIPDARSYSILIHGLVKAG 348



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 120/280 (42%), Gaps = 9/280 (3%)

Query: 76  GIIPTPD----LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQ 131
           G IP       L+H +++    + +  + F+    +G  L  +A+N ++D   K+G+  +
Sbjct: 329 GFIPDARSYSILIHGLVKAGLANETYEL-FYAMKEQGCVLDTHAYNAVIDGFCKSGKVNK 387

Query: 132 MWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
            +  +  MK  G   ++ T+ S+ D      + DEA M F+    +G++ +VV  +SL+ 
Sbjct: 388 AYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLID 447

Query: 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
              +        L     ++K + P+  ++  LL+   K   + EA   F  M +     
Sbjct: 448 GFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDL--KC 505

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P + + Y   +  L R ++ ++A  F + M+     P    ++  +  L K  +   A  
Sbjct: 506 PPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASG 565

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
           L+      +G  PDS +YN + E L    +  +    F E
Sbjct: 566 LFSRFKA-NGGIPDSASYNAMIEGLSSANKAMDAYALFEE 604



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 130/329 (39%), Gaps = 39/329 (11%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D LGK GR +  ++    M + G V     + S+  S+   G+ ++    +  M   G
Sbjct: 235 LIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTG 294

Query: 178 VEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
              D+  +N+ +  + +  E +  RAL F         PD  S++IL+ G  K G   E 
Sbjct: 295 CSPDLTLINTYMDCVFKAGETEKGRAL-FREINAHGFIPDARSYSILIHGLVKAGLANET 353

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            + F  M E+      H  AY   +    +  +V++A + L  MK +   PT+  + + +
Sbjct: 354 YELFYAMKEQGCVLDTH--AYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVI 411

Query: 297 DILVKLNDSTHAVQLWD--------------------------------IM--MVFHGAF 322
           D L K++    A  L++                                IM  ++  G  
Sbjct: 412 DGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLT 471

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           P+  T+N + + L+K + ++E    F  M   +  P  +  +  I  L    +   A   
Sbjct: 472 PNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVF 531

Query: 383 WNYILENGILPLEASANELLVGLRNLGRL 411
           W  + + G+ P   +   ++ GL   G +
Sbjct: 532 WQEMQKLGLKPNTITYTTMISGLAKAGNI 560


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 144/324 (44%), Gaps = 8/324 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   +   +N  +  L K GR       +  M  + +L  + ++ ++   YC  G   +
Sbjct: 333 KGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMK 392

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           A + FD +    +   +V  N+LL  +CRQ E + ++ L+ +  + + + PD  ++ IL+
Sbjct: 393 AFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLK-VEMINEGIAPDIVTYTILV 451

Query: 225 EGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
            G  K G++  A + F EM+ E  E +     AY T ++  ++      A      M  +
Sbjct: 452 NGSCKMGSLSMAQEFFDEMLHEGLELDS---YAYATRIVGELKLGDTSRAFSLQEEMLAK 508

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P L  ++  +D L KL +   A +L    MV  G  PD +TY  I    ++N R+ +
Sbjct: 509 GFPPDLIIYNVVVDGLCKLGNLEEASELLQ-KMVSDGVIPDYVTYTSIIHAHLENGRLRK 567

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
             + F+EM+     P+ +     I         E A   ++ + E GILP   + N L+ 
Sbjct: 568 GREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLIN 627

Query: 404 GLRNLGRLSDVRRFAEEMLNRRIL 427
           GL  + R+     F  EM+ + I 
Sbjct: 628 GLCKVRRMDQAYNFFAEMVEKGIF 651



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 158/406 (38%), Gaps = 69/406 (16%)

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQ-MW 133
           +I  PDL   VL     SP  A+  FRWA    G R S + +  ++++L +N       W
Sbjct: 77  VIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYW 136

Query: 134 NAVRVMKED----------GVLSLPTFASIFD----SYCGAGKYDEAVMSFD-------- 171
              RV+  +          G +S      I D     Y      ++ +  FD        
Sbjct: 137 VMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLS 196

Query: 172 ---------------------------VMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
                                       M   G++  +V  N+LL + C+   +  + L+
Sbjct: 197 PDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKG-GKVQQGLD 255

Query: 205 FLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM------VERFEWNPEHVLAY 257
            L+ + ++   P+  ++ +L+ G  K+G  E+A    GEM      V  + +NP   L Y
Sbjct: 256 LLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNP---LIY 312

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
             F         + EAL     M  +   PT+  +++ +  L KL   + A+Q    M+ 
Sbjct: 313 GYF-----NKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLA 367

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
            +   PD ++YN +     +   + +    F E+      PT +   T +  L    E E
Sbjct: 368 -NNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELE 426

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
           +A ++   ++  GI P   +   L+ G   +G LS  + F +EML+
Sbjct: 427 VAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLH 472



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 148/366 (40%), Gaps = 39/366 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           RG   +   +N++++ L K G FEQ    +  M + G+ +S  T+  +   Y   G   E
Sbjct: 263 RGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAE 322

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+   + M + G    V   NS +  +C+    +    +  + +   + PD  S+  L+ 
Sbjct: 323 ALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIY 382

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ + GN+ +A   F E+  R  +    ++ Y T L  L R  +++ A +    M  E  
Sbjct: 383 GYCRLGNLMKAFLLFDEL--RSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGI 440

Query: 286 FPTL--------------------KFF-------------SNALDIL--VKLNDSTHAVQ 310
            P +                    +FF             + A  I+  +KL D++ A  
Sbjct: 441 APDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFS 500

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           L + M+   G  PD + YN++ + L K   + E  +   +M+ +   P  +   + I   
Sbjct: 501 LQEEMLA-KGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAH 559

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
           L+        EI+  +L  G+ P   +   L+ G    GRL     +  EM  + IL   
Sbjct: 560 LENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNV 619

Query: 431 VTMHKL 436
           +T + L
Sbjct: 620 ITYNSL 625



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 129/310 (41%), Gaps = 16/310 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++D L + G  E        M  +G+   + T+  + +  C  G    A   FD M
Sbjct: 411 TYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEM 470

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
              G+E D  A  + +    +    TSRA       + K   PD   + ++++G  K GN
Sbjct: 471 LHEGLELDSYAYATRIVGELKL-GDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGN 529

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +EEA++   +MV      P++V  Y + +   +   ++ +  +    M  +   P++  +
Sbjct: 530 LEEASELLQKMVSDGVI-PDYV-TYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTY 587

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVF-----HGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
           +      V ++      +L    + F      G  P+ +TYN +   L K +R+ +   F
Sbjct: 588 T------VLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNF 641

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           F EM++    P   +    I    +    + A+ ++  +L+ G+ P   + + LL  L  
Sbjct: 642 FAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGK 701

Query: 408 LGRLSDVRRF 417
             +L  VR+ 
Sbjct: 702 DCKLQAVRQL 711



 Score = 38.1 bits (87), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 5/116 (4%)

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           K   V +    F +MIK+   P   NC   + +L D D    A+E++  + E GI P   
Sbjct: 176 KKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIV 235

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL-----KKAFYNESRSM 447
           + N LL      G++        EM  R     +VT + L     KK  + +++ +
Sbjct: 236 TYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGL 291


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 143/331 (43%), Gaps = 9/331 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N ++  + + G  ++ +  +  +   G    + T+  +       GK++        
Sbjct: 232 FTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSD 291

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   G E +VV  + L+S++CR + +    +  L  +KK  + PDG  +  L+    KEG
Sbjct: 292 MVARGCEANVVTYSVLISSVCR-DGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEG 350

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V+ A +    M+   +     ++ Y T L  L + K+ DEAL     +    C P    
Sbjct: 351 RVDLAIEVLDVMIS--DGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASS 408

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF--H 349
           +++    L        A+ +  + M+  G  PD +TYN +  CL ++  V E  +     
Sbjct: 409 YNSMFSALWSTGHKVRALGMI-LEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDM 467

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM  +E +P+ ++    +  L        AIE+   +++ G  P E +   L+ G+   G
Sbjct: 468 EMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIEGIGFGG 527

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
            L+D R  A  ++N    I E +  +L K F
Sbjct: 528 CLNDARDLATTLVNMDA-ISEHSFERLYKTF 557



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 127/294 (43%), Gaps = 5/294 (1%)

Query: 129 FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
            ++    + +++  G   L  + +I   +C A + D A    D M   G   D+V  N L
Sbjct: 108 IDKAIQVMHILENHGHPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNIL 167

Query: 189 LSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247
           + ++C +      ALEF N+ +K+   P   ++ IL+E    +G ++EA K   EM+E  
Sbjct: 168 IGSLCSR-GMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLE-I 225

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
              P+ +  Y + +  + R   VD A + +  +  +   P +  ++  L  L+       
Sbjct: 226 NLQPD-MFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEA 284

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
             +L    MV  G   + +TY+++   + ++ +V E      +M K   +P        I
Sbjct: 285 GYELMS-DMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLI 343

Query: 368 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
             L      ++AIE+ + ++ +G +P   + N +L  L    R  +     E++
Sbjct: 344 AALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKL 397



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 6/204 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +   Y ++ ++  L K GR +     + VM  DG +  +  + +I    C   + DE
Sbjct: 330 KGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADE 389

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  F+ +   G   +  + NS+ SA+    ++       L  + K VDPDG ++  L+ 
Sbjct: 390 ALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLIS 449

Query: 226 GWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
              ++G V+EA +   +M +E  E  P  V++Y   L+ L +  +V +A++ L  M  + 
Sbjct: 450 CLCRDGMVDEAIELLVDMEMESSECKPS-VVSYNIVLLGLCKVSRVSDAIEVLAAMVDKG 508

Query: 285 CFP---TLKFFSNALDILVKLNDS 305
           C P   T  F    +     LND+
Sbjct: 509 CRPNETTYTFLIEGIGFGGCLNDA 532



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/267 (19%), Positives = 104/267 (38%), Gaps = 39/267 (14%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
           C AG ++E++     +   G + DVV    L+  +   +    +A++ ++ ++    PD 
Sbjct: 68  CKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKT-IDKAIQVMHILENHGHPDL 126

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++  ++ G+ +   ++ A +    M  +  ++P+ ++ Y   + +L     +D AL+F 
Sbjct: 127 IAYNAIITGFCRANRIDSAYQVLDRMKNK-GFSPD-IVTYNILIGSLCSRGMLDSALEFK 184

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             +  ENC PT+                                    +TY ++ E  + 
Sbjct: 185 NQLLKENCKPTV------------------------------------VTYTILIEATLL 208

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
              + E  K   EM++   QP      + I  +      + A +I + I   G  P   +
Sbjct: 209 QGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVIT 268

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNR 424
            N LL GL N G+         +M+ R
Sbjct: 269 YNILLRGLLNQGKWEAGYELMSDMVAR 295


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 151/353 (42%), Gaps = 39/353 (11%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + + Y + + + VLG+ G+  + +  ++ M ++G    + T+  + D+ C A K D A
Sbjct: 253 GLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCA 312

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLE 225
              F+ M     + D V   +LL       +  S   +F + ++K    PD  +F IL++
Sbjct: 313 KEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDS-VKQFWSEMEKDGHVPDVVTFTILVD 371

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K GN  EA  T   M ++      H   Y T +  L+R  ++D+AL+    M+    
Sbjct: 372 ALCKAGNFGEAFDTLDVMRDQGILPNLH--TYNTLICGLLRVHRLDDALELFGNMESLGV 429

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIM-----------------------------M 316
            PT   +   +D   K  DS  A++ ++ M                              
Sbjct: 430 KPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQ 489

Query: 317 VFHGA-----FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
           +F+G       PDS+TYNM+ +C  K   + E  K   EM++N  +P  +   + I  L 
Sbjct: 490 IFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLY 549

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            AD  + A +++  + E  + P   + N LL GL   G++ +     E M+ +
Sbjct: 550 KADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQK 602



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 139/346 (40%), Gaps = 75/346 (21%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL----------------------------- 145
            + ++VD L K G F + ++ + VM++ G+L                             
Sbjct: 365 TFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNM 424

Query: 146 -------SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
                  +  T+    D Y  +G    A+ +F+ M   G+  ++VA N+ L ++ +   +
Sbjct: 425 ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKA-GR 483

Query: 199 TSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE------------ 245
              A +    +K I + PD  ++ ++++ + K G ++EA K   EM+E            
Sbjct: 484 DREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNS 543

Query: 246 ----------------------RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
                                   +  P  V+ Y T L  L +  ++ EA++    M  +
Sbjct: 544 LINTLYKADRVDEAWKMFMRMKEMKLKPT-VVTYNTLLAGLGKNGKIQEAIELFEGMVQK 602

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
            C P    F+   D L K ++ T A+++   MM   G  PD  TYN I   L+KN +V E
Sbjct: 603 GCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDM-GCVPDVFTYNTIIFGLVKNGQVKE 661

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
              FFH+M K  + P  +   T +  ++ A   E A +I    L N
Sbjct: 662 AMCFFHQMKKLVY-PDFVTLCTLLPGVVKASLIEDAYKIITNFLYN 706



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 159/370 (42%), Gaps = 20/370 (5%)

Query: 55   IICEILAHASSDDIES---ALACTGIIPTPD-LVHEVLQLS--YDSPSSAVDFFRWAGRG 108
            +I  ILA A  D+  S    L   GI    D ++  +++ S  +++ S A   F    + 
Sbjct: 719  LIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKD 778

Query: 109  QRLSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
              + P    +NL++  L +    E   +    +K  G +  + T+  + D+Y  +GK DE
Sbjct: 779  LGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDE 838

Query: 166  AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--PDGDSFAIL 223
                +  MS H  E + +  N ++S + +  N    AL+    +    D  P   ++  L
Sbjct: 839  LFELYKEMSTHECEANTITHNIVISGLVKAGN-VDDALDLYYDLMSDRDFSPTACTYGPL 897

Query: 224  LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
            ++G  K G + EA + F  M++ +   P   + Y   +    +  + D A    + M  E
Sbjct: 898  IDGLSKSGRLYEAKQLFEGMLD-YGCRPNCAI-YNILINGFGKAGEADAACALFKRMVKE 955

Query: 284  NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
               P LK +S  +D L  +      +  +  +    G  PD + YN+I   L K+ R+ E
Sbjct: 956  GVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKE-SGLNPDVVCYNLIINGLGKSHRLEE 1014

Query: 344  VEKFFHEMIKNEWQPTPLNCATAITMLLD---ADEPEIAIEIWNYILENGILPLEASANE 400
                F+EM K     TP +  T  +++L+   A   E A +I+N I   G+ P   + N 
Sbjct: 1015 ALVLFNEM-KTSRGITP-DLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNA 1072

Query: 401  LLVGLRNLGR 410
            L+ G    G+
Sbjct: 1073 LIRGYSLSGK 1082



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 139/331 (41%), Gaps = 16/331 (4%)

Query: 91  SYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAV-----RVMKEDG 143
           S+    S+  +F+       L  +    N M++ L  +G+ E+M         R++K D 
Sbjct: 94  SFPDTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRD- 152

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
                T+ +IF S    G   +A  +   M   G   +  + N L+  + +    T  A+
Sbjct: 153 ---TNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCT-EAM 208

Query: 204 EFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           E   R + +   P   +++ L+ G  K  +++       EM E     P +V  +   + 
Sbjct: 209 EVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEM-ETLGLKP-NVYTFTICIR 266

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
            L R  +++EA + L+ M  E C P +  ++  +D L        A ++++ M       
Sbjct: 267 VLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHK- 325

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           PD +TY  + +    N+ +  V++F+ EM K+   P  +     +  L  A     A + 
Sbjct: 326 PDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDT 385

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSD 413
            + + + GILP   + N L+ GL  + RL D
Sbjct: 386 LDVMRDQGILPNLHTYNTLICGLLRVHRLDD 416



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 116/289 (40%), Gaps = 4/289 (1%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVLSLPTFASIFDSYCGAGKYDEAV-MSFDV 172
             +N ++D  GK+G+ ++++   + M   +   +  T   +      AG  D+A+ + +D+
Sbjct: 822  TYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDL 881

Query: 173  MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
            MS             L+  + +          F   +     P+   + IL+ G+ K G 
Sbjct: 882  MSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGE 941

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             + A   F  MV+  E     +  Y   +  L    +VDE L + + +K     P +  +
Sbjct: 942  ADAACALFKRMVK--EGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCY 999

Query: 293  SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
            +  ++ L K +    A+ L++ M    G  PD  TYN +   L     V E  K ++E+ 
Sbjct: 1000 NLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQ 1059

Query: 353  KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            +   +P        I     + +PE A  ++  ++  G  P   +  +L
Sbjct: 1060 RAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 142/339 (41%), Gaps = 14/339 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRF--EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK--- 162
           G  L+ Y++N ++ +L K+ RF  E M    R++ E    SL T++S+     G GK   
Sbjct: 183 GFVLNAYSYNGLIHLLLKS-RFCTEAMEVYRRMILEGFRPSLQTYSSLM---VGLGKRRD 238

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFA 221
            D  +     M   G++ +V      +  + R   + + A E L R+  +   PD  ++ 
Sbjct: 239 IDSVMGLLKEMETLGLKPNVYTFTICIRVLGRA-GKINEAYEILKRMDDEGCGPDVVTYT 297

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +L++       ++ A + F E ++     P+ V  Y T L      + +D   +F   M+
Sbjct: 298 VLIDALCTARKLDCAKEVF-EKMKTGRHKPDRV-TYITLLDRFSDNRDLDSVKQFWSEME 355

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            +   P +  F+  +D L K  +   A    D+M    G  P+  TYN +   L++  R+
Sbjct: 356 KDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRD-QGILPNLHTYNTLICGLLRVHRL 414

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            +  + F  M     +PT       I     + +   A+E +  +   GI P   + N  
Sbjct: 415 DDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNAS 474

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           L  L   GR  + ++    + +  ++   VT + + K +
Sbjct: 475 LYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCY 513



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 132/307 (42%), Gaps = 28/307 (9%)

Query: 164  DEAVMSFDVMSMHGVEQDVVAVNSLLSAICR---QENQTSRALEFLNRVKK--IVDPDGD 218
            D AV   + +  +G+ +D    +S+L  I R   + N  S A     +  K   V P   
Sbjct: 730  DNAVSFSERLVANGICRDG---DSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLP 786

Query: 219  SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            ++ +L+ G  +   +E A   F + V+     P+ V  Y   L    +  ++DE  +  +
Sbjct: 787  TYNLLIGGLLEADMIEIAQDVFLQ-VKSTGCIPD-VATYNFLLDAYGKSGKIDELFELYK 844

Query: 279  VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
             M    C       +  +  LVK  +   A+ L+  +M      P + TY  + + L K+
Sbjct: 845  EMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKS 904

Query: 339  KRVHEVEKFFHEMIKNEWQPTPLNCA---TAITMLLDADEPEIAIEIWNYILENGILPLE 395
             R++E ++ F  M+    +P   NCA     I     A E + A  ++  +++ G+ P  
Sbjct: 905  GRLYEAKQLFEGMLDYGCRP---NCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDL 961

Query: 396  ASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKA--------FYNE 443
             + + L+  L  +GR+ +   + +E+    LN  ++ Y + ++ L K+         +NE
Sbjct: 962  KTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNE 1021

Query: 444  SRSMRDI 450
             ++ R I
Sbjct: 1022 MKTSRGI 1028


>gi|4455203|emb|CAB36526.1| putative protein [Arabidopsis thaliana]
 gi|7269532|emb|CAB79535.1| putative protein [Arabidopsis thaliana]
          Length = 439

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 160/343 (46%), Gaps = 18/343 (5%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYD 164
           G  +SP  Y  N++V+   +  +     + +  M + G+   + T +S+ + +C +    
Sbjct: 41  GIEISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIK 100

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAIL 223
           +AV     M   G+++DVV    L+  +C+       ALE L R+K + + P+  +++ L
Sbjct: 101 DAVYVAGQMEKMGIKRDVVVDTILIDTLCKNR-LVVPALEVLKRMKDRGISPNVVTYSSL 159

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI-RGK--QVDEALKFLRVM 280
           + G  K G + +A +   EM  + + NP +V+ +   +     RGK  +VD   K +  M
Sbjct: 160 ITGLCKSGRLADAERRLHEMDSK-KINP-NVITFSALIDAYAKRGKLSKVDSVYKMMIQM 217

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
             +   P +  +S+ +  L   N    A+++ D +M+  G  P+ +TY+ +     K+ R
Sbjct: 218 SID---PNVFTYSSLIYGLCMHNRVDEAIKMLD-LMISKGCTPNVVTYSTLANGFFKSSR 273

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           V +  K   +M +       ++C T I     A + ++A+ ++ Y+  NG++P   S N 
Sbjct: 274 VDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNI 333

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA 439
           +L GL   G +       E M   R    I+ Y + +H + KA
Sbjct: 334 VLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKA 376



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 112/270 (41%), Gaps = 42/270 (15%)

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEA 236
           +  D+   N L++  CR   Q S AL +L ++ K+ ++PD  + + L+ G+    ++++A
Sbjct: 44  ISPDLYTCNILVNCFCRCF-QPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDA 102

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLI-TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
               G+M E+     + V+  +T LI TL + + V  AL+ L+ MK              
Sbjct: 103 VYVAGQM-EKMGIKRDVVV--DTILIDTLCKNRLVVPALEVLKRMKD------------- 146

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
                                   G  P+ +TY+ +   L K+ R+ + E+  HEM   +
Sbjct: 147 -----------------------RGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKK 183

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
             P  +  +  I       +      ++  +++  I P   + + L+ GL    R+ +  
Sbjct: 184 INPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAI 243

Query: 416 RFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           +  + M+++      VT   L   F+  SR
Sbjct: 244 KMLDLMISKGCTPNVVTYSTLANGFFKSSR 273


>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Glycine max]
          Length = 1078

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 136/301 (45%), Gaps = 6/301 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N++++ L + G+F+     +R M+E GV  +  T+ ++ + YC  G+Y  A    D M
Sbjct: 177 TFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDCM 236

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGN 232
           +  G+  DV   N  +  +CR ++++++    L R+++ +V P+  ++  L+ G+ +EG 
Sbjct: 237 ASKGIGVDVCTYNVFIDNLCR-DSRSAKGYLLLKRMRRNMVYPNEITYNTLISGFVREGK 295

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +E A K F EM   F   P  +  Y T +        + EAL+ + VM      P    +
Sbjct: 296 IEVATKVFDEM-SLFNLLPNSI-TYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNEVTY 353

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
              L+ L K  +      + + M +  G     ++Y  + + L KN  + E  +   +M+
Sbjct: 354 GALLNGLYKNAEFGMVSSILERMRM-GGVRVSHISYTAMIDGLCKNGMLEEAVQLLDDML 412

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           K    P  +  +  I       +   A EI   + + G++P     + L+     +G L 
Sbjct: 413 KVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMYKTGLVPNGILYSTLIYNYCKMGYLK 472

Query: 413 D 413
           +
Sbjct: 473 E 473



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 152/385 (39%), Gaps = 70/385 (18%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQ--------------------------------MWNA 135
           G R+S  ++  M+D L KNG  E+                                + NA
Sbjct: 380 GVRVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNA 439

Query: 136 VRVMKE--------DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
             +M +        +G+L    ++++  +YC  G   EA+ ++ VM+  G   D    N 
Sbjct: 440 KEIMCKMYKTGLVPNGIL----YSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNV 495

Query: 188 LLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           L++  CR   +   A  F+N + ++ +DP+  +F  ++ G+   G+  +A   F +M   
Sbjct: 496 LVATFCRY-GKLEEAEYFMNHMSRMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKM-NS 553

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV---KLN 303
           F   P  +  Y   L  L  G  ++EALKF   ++   C P      NA+D ++   KL 
Sbjct: 554 FGHFPS-LFTYGGLLKGLCIGGHINEALKFFHRLR---CIP------NAVDNVIFNTKLT 603

Query: 304 DSTHAVQLWDIM-----MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI-KNEWQ 357
            +  +  L D +     MV +   PD+ TY  +   L K  ++        + I K    
Sbjct: 604 STCRSGNLSDAIALINEMVTNDFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLS 663

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
           P P    + +  LL       A+ I+  +L   + P   + N ++      G+ S V   
Sbjct: 664 PNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDI 723

Query: 418 AEEMLNRRILI----YEVTMHKLKK 438
              M ++ +      Y + +H   K
Sbjct: 724 LSTMKSKNLCFNLATYNILLHGYAK 748



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/349 (19%), Positives = 132/349 (37%), Gaps = 8/349 (2%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           +P  ++L++ V  +N           +M   G+  S+ T   +  S     K D     F
Sbjct: 104 NPAVFDLLIRVCLRNRMVGDAVQTFYLMGFRGLNPSVYTCNMVLGSLVKEQKVDMFWSFF 163

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             M   G+  DV   N LL+A+C +    +         +  V P   ++  LL  + K+
Sbjct: 164 KGMLAKGICPDVATFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKK 223

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G  + A++    M  +       V  Y  F+  L R  +  +    L+ M+    +P   
Sbjct: 224 GRYKAASQLIDCMASK--GIGVDVCTYNVFIDNLCRDSRSAKGYLLLKRMRRNMVYPNEI 281

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            ++  +   V+      A +++D M +F+   P+S+TYN +         + E  +    
Sbjct: 282 TYNTLISGFVREGKIEVATKVFDEMSLFN-LLPNSITYNTLIAGHCTTGNIGEALRLMDV 340

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M+ +  +P  +     +  L    E  +   I   +   G+     S   ++ GL   G 
Sbjct: 341 MVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSHISYTAMIDGLCKNGM 400

Query: 411 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 459
           L +  +  ++ML   +    VT   L   F+   +    I ++ E  CK
Sbjct: 401 LEEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGK----INNAKEIMCK 445



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 101/246 (41%), Gaps = 4/246 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           SL T+  +    C  G  +EA+  F  +       D V  N+ L++ CR  N  S A+  
Sbjct: 559 SLFTYGGLLKGLCIGGHINEALKFFHRLRCIPNAVDNVIFNTKLTSTCRSGN-LSDAIAL 617

Query: 206 LNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           +N  V     PD  ++  L+ G  K+G +  A    G+ +E+   +P   + Y + +  L
Sbjct: 618 INEMVTNDFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLSPNPAV-YTSLVDGL 676

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
           ++      AL     M  ++  P    F+  +D   +   ++    +   M   +  F +
Sbjct: 677 LKHGHARAALYIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSKNLCF-N 735

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
             TYN++     K   +      + +MI++ + P   +  + I     +   ++AI+I  
Sbjct: 736 LATYNILLHGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHSLILGYCQSKSFDVAIKILR 795

Query: 385 YILENG 390
           +I   G
Sbjct: 796 WITLEG 801



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 71/351 (20%), Positives = 148/351 (42%), Gaps = 22/351 (6%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            A+N+++D   + G+  ++ + +  MK   +  +L T+  +   Y          M +  M
Sbjct: 703  AFNVIIDQYSRKGKTSKVNDILSTMKSKNLCFNLATYNILLHGYAKRHAMARCFMLYKDM 762

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-----SFAILLEGWE 228
              HG   D  + +SL+   C+     S++ +   ++ + +  +G      +F +L+  + 
Sbjct: 763  IRHGFLPDKFSWHSLILGYCQ-----SKSFDVAIKILRWITLEGHVIDRFTFNMLITKFC 817

Query: 229  KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
            +   +++A +   +M  +F   P +V  Y      LIR     +A + L+V+      PT
Sbjct: 818  ERNEMKKAFELVKQM-NQFMVIP-NVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVPT 875

Query: 289  LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
             K +   ++ + ++ +   A++L D M    G    ++  + I   L  +K++       
Sbjct: 876  NKQYITLINGMCRVGNIKGAMKLQDEMKTL-GISSHNVAMSAIVRGLANSKKIENAIWVL 934

Query: 349  HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA-NELLVGLRN 407
              M++ +  PT     T + +         A+E+ + I+E+  + L+  A N L+ GL  
Sbjct: 935  DLMLEMQIIPTVATFTTLMHVYCKEANVAKALELRS-IMEHCHVKLDVVAYNVLISGLCA 993

Query: 408  LGRLSDVRRFAEEMLNRRIL----IYEVTMHKLKKAFYN--ESRSMRDIFD 452
             G +    +  EEM  R +     IY V +       Y     + +RDI D
Sbjct: 994  NGDIEAAFKLYEEMKQRDLWPNTSIYIVLIDSFCAGNYQIESEKLLRDIQD 1044


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 144/341 (42%), Gaps = 6/341 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           R   +G  L    +N +V     +G  +  W     MK DGV  S+ T  ++   YC   
Sbjct: 214 RMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMK 273

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           + +EA   ++ M   GV  DVV +++L+  +CR + + S A      + KI V P+  ++
Sbjct: 274 RIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCR-DGRFSEAYALFREMDKIGVAPNHVTY 332

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
              ++   K   V E+    GEMV R       ++ Y T +  L +  +++EA   LR  
Sbjct: 333 CTFIDSLAKVQRVNESLGLLGEMVSR--GVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHA 390

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
             +N  P    ++  +D   +  +   A Q+  + M      P+ +T++ I   L+K   
Sbjct: 391 LSDNITPNCVTYTVLVDAHCRAGNIDGAEQML-LQMEEKSVSPNVVTFSSILNGLVKRGC 449

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           + +   +  +M  +   P  +   T I         E A++++  +L  G+       + 
Sbjct: 450 IAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDS 509

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
           L+ GLR  G + +     ++M  R +L+  V    L    +
Sbjct: 510 LVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLF 550



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 140/307 (45%), Gaps = 6/307 (1%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +VD L ++GRF + +   R M + GV  +  T+ +  DS     + +E++     M   G
Sbjct: 300 LVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRG 359

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           V  D+V   +++  + + E +   A + L + +   + P+  ++ +L++   + GN++ A
Sbjct: 360 VAMDLVMYTTVMDRLGK-EGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGA 418

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            +   +M E+   +P +V+ + + L  L++   + +A  ++R MK     P +  +   +
Sbjct: 419 EQMLLQMEEK-SVSP-NVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLI 476

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
           D   K      A+ ++  M+   G   ++   + +   L KN  + E E  F +M +   
Sbjct: 477 DGFFKCQGQEAALDVYRDML-HEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGL 535

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
               +N AT +  L        A+++   ++E  + P     N  +  L  LG+ S+ + 
Sbjct: 536 LLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKS 595

Query: 417 FAEEMLN 423
           F +EM N
Sbjct: 596 FLKEMRN 602



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 138/318 (43%), Gaps = 8/318 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG  +    +  ++D LGK G+ E+  + +R    D +  +  T+  + D++C AG  D 
Sbjct: 358 RGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDG 417

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A      M    V  +VV  +S+L+ + ++    ++A  ++ ++K   + P+  ++  L+
Sbjct: 418 AEQMLLQMEEKSVSPNVVTFSSILNGLVKR-GCIAKAAGYMRKMKDSGIAPNVVTYGTLI 476

Query: 225 EGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +G+ K    E A   + +M+ E  E N   V   ++ +  L +   ++EA    + M   
Sbjct: 477 DGFFKCQGQEAALDVYRDMLHEGVEANNFIV---DSLVNGLRKNGNIEEAEALFKDMGER 533

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
                   ++  +D L K  +   A+++   +M      PD++ YN+   CL +  +  E
Sbjct: 534 GLLLDHVNYATLMDGLFKTGNMPAALKVGQELME-RNLSPDAVVYNVFINCLCRLGKFSE 592

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
            + F  EM     +P      T I+          A+++ N +  + I P   +   L+V
Sbjct: 593 AKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVV 652

Query: 404 GLRNLGRLSDVRRFAEEM 421
           GL   G +   +    EM
Sbjct: 653 GLLEAGVVEKAKYLLNEM 670



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 133/330 (40%), Gaps = 11/330 (3%)

Query: 97  SAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           +A+D +R     G   + +  + +V+ L KNG  E+     + M E G+L     +A++ 
Sbjct: 487 AALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLM 546

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-V 213
           D     G    A+     +    +  D V  N  ++ +CR   + S A  FL  ++   +
Sbjct: 547 DGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRL-GKFSEAKSFLKEMRNTGL 605

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP--EHVLAYETFLITLIRGKQVD 271
           +PD  ++  ++    +EGN  +A K   EM    +W+    +++ Y T ++ L+    V+
Sbjct: 606 EPDQATYNTMISAQCREGNTSKALKLLNEM----KWSSIKPNLITYTTLVVGLLEAGVVE 661

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           +A   L  M      PT   +   L            +++ ++MM   G   D   YN +
Sbjct: 662 KAKYLLNEMASAGFTPTPLTYRRVLQACSGSRSPYVILEVHELMM-GAGLHADITVYNTL 720

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
              L  +    +      EM+     P  +     I     +   + A   +  +L  G+
Sbjct: 721 VHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGL 780

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            P  A+ N LL GL + GR+ +      EM
Sbjct: 781 SPNIATFNTLLGGLESAGRIGEADTVICEM 810



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/213 (19%), Positives = 86/213 (40%), Gaps = 3/213 (1%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           +  + ++    C  G   +A +  D M   G+  D +  N+L+   C+  +  +    + 
Sbjct: 714 ITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYA 773

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
             + + + P+  +F  LL G E  G + EA+    EM ++    P + L Y+  +    +
Sbjct: 774 QMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEM-KKMGLEPNN-LTYDILVTGYAK 831

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
                EAL+    M  +   P    +++ +    K      A +L+   M   G    S 
Sbjct: 832 KSNKVEALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFS-EMKRRGVLHTSS 890

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
           TY+++     K +   EV     +M +  ++P+
Sbjct: 891 TYDILLNGWSKLRNGTEVRILLKDMKELGFKPS 923


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/351 (19%), Positives = 164/351 (46%), Gaps = 8/351 (2%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           T  ++ + L  + DS +    F ++   G  +  Y  +++++ L K+G+       ++ +
Sbjct: 170 TYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSL 229

Query: 140 KEDGVLSLPT---FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
              G++  PT   + ++ + YC  G+ + A  +F  M    ++ D +  N+L++ +C+ E
Sbjct: 230 VNAGLV--PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAE 287

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
             T+     +      V+P  ++F  L++ + + G +E+      EM E     P +V++
Sbjct: 288 RITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQEN-GLKP-NVVS 345

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           Y + +    +  ++ EA+  L  M  ++  P  + ++  +D  V+   +  A  L +  M
Sbjct: 346 YGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVE-KM 404

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
             +G  P  +TYN++ + L    ++ E E+  + +  +   P  ++  T I+        
Sbjct: 405 KSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNI 464

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           + A+++   + + GI     + ++L+ GL   GRL+++    ++M+   ++
Sbjct: 465 DKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVV 515



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 142/335 (42%), Gaps = 10/335 (2%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           AV   R  GR     P  +++N+++  + + GR          M E  VL +  T+ ++ 
Sbjct: 46  AVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMI 105

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKI 212
           D +   G  +      D M  HG++ + +  N LLS +CR  +  +TS  L+ +   K +
Sbjct: 106 DGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMV 165

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PDG +++IL +G  + G+ +     FG+ ++      ++  +    L  L +  +V  
Sbjct: 166 --PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCS--ILLNGLCKDGKVSI 221

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A + L+ +      PT   ++  ++   +  +   A   +  M   H   PD +TYN + 
Sbjct: 222 AEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH-IKPDHITYNALI 280

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
             L K +R+   +    EM  N   PT     T I       + E    + + + ENG+ 
Sbjct: 281 NGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLK 340

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           P   S   ++      G++ +     ++M ++ +L
Sbjct: 341 PNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 375



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 114/285 (40%), Gaps = 10/285 (3%)

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G++ +   +F +++  G   D  A N  + A C        A+  L R+ +   P  ++F
Sbjct: 6   GRHADVRRAFGILASAGARPDTFAWNKAVQA-CVAAGDLGEAVGMLRRMGRDGAPPPNAF 64

Query: 221 A--ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +  +++ G  + G   +A + F EM ER    P H+  Y T +   I+G  ++   +   
Sbjct: 65  SYNVVIAGMWRAGRGGDAVEVFDEMTERAVL-PNHI-TYNTMIDGHIKGGDLEAGFRLRD 122

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M      P    ++  L  L +         L D  M      PD  TY+++F+ L +N
Sbjct: 123 QMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLD-EMASQKMVPDGFTYSILFDGLSRN 181

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
                +   F + +KN        C+  +  L    +  IA E+   ++  G++P     
Sbjct: 182 GDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIY 241

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKA 439
           N L+ G    G L        +M +R I    + Y   ++ L KA
Sbjct: 242 NTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKA 286



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 139/343 (40%), Gaps = 24/343 (6%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWN-----AVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           G + +   +N+++  L + GR  +        A + M  DG     T++ +FD     G 
Sbjct: 128 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGF----TYSILFDGLSRNGD 183

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFA 221
               +  F     +GV       + LL+ +C+ + + S A E L   V   + P    + 
Sbjct: 184 SKAMLSLFGKYLKNGVTIGDYTCSILLNGLCK-DGKVSIAEEVLQSLVNAGLVPTRVIYN 242

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+ G+ + G +E A  TFG+M  R    P+H+  Y   +  L + +++  A   L  M+
Sbjct: 243 TLINGYCQTGELEGAFSTFGQMKSR-HIKPDHI-TYNALINGLCKAERITNAQDLLMEMQ 300

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF-----HGAFPDSLTYNMIFECLI 336
                PT++ F+  +D   +        QL    +V      +G  P+ ++Y  I     
Sbjct: 301 DNGVNPTVETFNTLIDAYGRTG------QLEKCFIVLSEMQENGLKPNVVSYGSIVNAFC 354

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           KN ++ E      +M   +  P        I   ++    + A  +   +  NGI P   
Sbjct: 355 KNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIV 414

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
           + N L+ GL N  ++S+       + N R++   V+ + L  A
Sbjct: 415 TYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISA 457



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/303 (18%), Positives = 136/303 (44%), Gaps = 15/303 (4%)

Query: 65  SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSP--YAWNLMV 120
           ++++  +L   G++PT  +++  L   Y         F   G  + + + P    +N ++
Sbjct: 222 AEEVLQSLVNAGLVPT-RVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALI 280

Query: 121 DVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
           + L K  R     + +  M+++GV  ++ TF ++ D+Y   G+ ++  +    M  +G++
Sbjct: 281 NGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLK 340

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANK 238
            +VV+  S+++A C+   +   A+  L+ +  K V P+   +  +++ + + G  ++A  
Sbjct: 341 PNVVSYGSIVNAFCKN-GKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI 399

Query: 239 TFGEMVERFEWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
               +VE+ + N     ++ Y   +  L    Q+ EA + +  +      P    ++  +
Sbjct: 400 ----LVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 455

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
                  +   A+ L   M  + G      TY+ +   L    R++E+E  + +M++N  
Sbjct: 456 SACCYRGNIDKALDLQQRMHKY-GIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNV 514

Query: 357 QPT 359
            P+
Sbjct: 515 VPS 517


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 154/351 (43%), Gaps = 12/351 (3%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
            RG     Y +N ++  + K G  E+    +  +   G    + ++  +  ++   GK+D
Sbjct: 235 ARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWD 294

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAIL 223
           E       M   G E + V  + L+S++CR   +   A+  L   ++K + PD  S+  L
Sbjct: 295 EGEKLVAEMFSRGCEPNKVTYSILISSLCRF-GRIDEAISVLKVMIEKELTPDTYSYDPL 353

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +    KEG ++ A      M+      P+ ++ Y T L  L +    ++AL+    ++G 
Sbjct: 354 ISALCKEGRLDLAIGIMDYMISN-GCLPD-IVNYNTILAALCKNGNANQALEIFNKLRGM 411

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
            C P +  ++  +  L    D + A+ +    M+  G  PD +TYN +  CL ++  V E
Sbjct: 412 GCPPNVSSYNTMISALWSCGDRSRALGMVP-AMISKGVDPDEITYNSLISCLCRDGLVEE 470

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
                 +M ++ ++PT ++    +  L      + AI ++  ++E G  P E +   L+ 
Sbjct: 471 AIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIE 530

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
           G+   G  ++    A  + +R + I + +  +L K F      M D++  L
Sbjct: 531 GIGFAGWRTEAMELANSLFSRDV-ISQDSFKRLNKTF-----PMLDVYKEL 575



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 139/321 (43%), Gaps = 6/321 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAG 161
           R   RG       +N+M+  L    +       + +++ ++ + ++ T+  + ++    G
Sbjct: 162 RMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEG 221

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSF 220
             +EA+   + M   G+  D+   N+++  +C+ E    RA E +  +  K   PD  S+
Sbjct: 222 GINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK-EGMVERAAELITSLTSKGCKPDVISY 280

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            ILL  +  +G  +E  K   EM  R    P  V  Y   + +L R  ++DEA+  L+VM
Sbjct: 281 NILLRAFLNQGKWDEGEKLVAEMFSR-GCEPNKV-TYSILISSLCRFGRIDEAISVLKVM 338

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
             +   P    +   +  L K      A+ + D  M+ +G  PD + YN I   L KN  
Sbjct: 339 IEKELTPDTYSYDPLISALCKEGRLDLAIGIMD-YMISNGCLPDIVNYNTILAALCKNGN 397

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
            ++  + F+++      P   +  T I+ L    +   A+ +   ++  G+ P E + N 
Sbjct: 398 ANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNS 457

Query: 401 LLVGLRNLGRLSDVRRFAEEM 421
           L+  L   G + +     ++M
Sbjct: 458 LISCLCRDGLVEEAIGLLDDM 478



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 124/283 (43%), Gaps = 12/283 (4%)

Query: 129 FEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           F+ +  A RVM+     + P    + ++   +C   + + A    + M   G   D+V  
Sbjct: 116 FKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTY 175

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVD---PDGDSFAILLEGWEKEGNVEEANKTFGE 242
           N ++ ++C +  +   AL+ L+++  ++D   P   ++ IL+E    EG + EA K   E
Sbjct: 176 NIMIGSLCNRR-KLGLALKVLDQL--LLDNCMPTVITYTILIEATIVEGGINEAMKLLEE 232

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M+ R    P+ +  Y   +  + +   V+ A + +  +  + C P +  ++  L   +  
Sbjct: 233 MLAR-GLLPD-MYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQ 290

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                  +L    M   G  P+ +TY+++   L +  R+ E       MI+ E  P   +
Sbjct: 291 GKWDEGEKLV-AEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYS 349

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
               I+ L      ++AI I +Y++ NG LP   + N +L  L
Sbjct: 350 YDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAAL 392



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/295 (19%), Positives = 125/295 (42%), Gaps = 8/295 (2%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVK 210
           + +  C AGK++E++   + +   G   DV+    L+      +N  + SR +E L   +
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEIL---E 130

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
              +PD  ++  ++ G+ K   +E A +    M  R  + P+ ++ Y   + +L   +++
Sbjct: 131 SHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKAR-GFLPD-IVTYNIMIGSLCNRRKL 188

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
             ALK L  +  +NC PT+  ++  ++  +       A++L + M+   G  PD  TYN 
Sbjct: 189 GLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLA-RGLLPDMYTYNA 247

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           I   + K   V    +    +     +P  ++    +   L+  + +   ++   +   G
Sbjct: 248 IIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG 307

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             P + + + L+  L   GR+ +     + M+ + +     +   L  A   E R
Sbjct: 308 CEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGR 362


>gi|255660878|gb|ACU25608.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 484

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 134/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  +   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-SSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++     ++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDXLRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPT 289



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ +  +
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDXL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284


>gi|115475660|ref|NP_001061426.1| Os08g0272200 [Oryza sativa Japonica Group]
 gi|37806221|dbj|BAC99723.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|37806377|dbj|BAC99889.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623395|dbj|BAF23340.1| Os08g0272200 [Oryza sativa Japonica Group]
 gi|125602810|gb|EAZ42135.1| hypothetical protein OsJ_26694 [Oryza sativa Japonica Group]
          Length = 528

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 152/388 (39%), Gaps = 58/388 (14%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRW-----AGRGQRLSPY--------AWNLMVDVLGKNGRF 129
           LV  + +L  D P +A    RW     A  G+R  P         AW+L +   GK  RF
Sbjct: 101 LVRALWELRRD-PDAAALALRWGEEGCAAAGERAGPPPPPPPPAEAWHLTIWAAGKARRF 159

Query: 130 EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
           +  W  VR M   GVL+      + + Y  A + ++A+ +FD M     E D     SLL
Sbjct: 160 DLAWAVVRRMLRRGVLTSRAMVIVMERYAAANEVNKAIKTFDAMEKFKTEADQTVFYSLL 219

Query: 190 SAICRQENQTSRALEFLNRVKKI------------------------------------V 213
            A+C+ +N    A E L   KK                                     +
Sbjct: 220 RALCKNKN-IEDAEELLLVRKKFFPLTAEGFNIILDGWCNVITDIAEAKRIWREMSNYCI 278

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PDG S+ +++  + K GN+ +  + + EM +R  W P  +  Y + +  L +   + + 
Sbjct: 279 TPDGTSYTLMVSCFAKVGNLFDTLRVYDEMKKR-GWTPS-IAVYNSLIYVLTKENCMKDV 336

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
                 +  E   P +K +++ +  L +      A  + + MM+  G  P  LTY+    
Sbjct: 337 QNIFTRIIDEGLQPNVKTYNSMIVPLCESRKLDEARMVLEDMML-KGIVPTILTYH---- 391

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
             ++ + + E  KF  +M  +   P        I      +EP  A+++WN +    I P
Sbjct: 392 TFLRQENIDETLKFLKKMKDDGCGPKSDTFLMLIDRFFQLNEPGHALKLWNEMKRYDIRP 451

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEM 421
             +    ++ GL   G +     + +EM
Sbjct: 452 SYSHYMSVVQGLIKHGCMQRALEYYDEM 479



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 110/261 (42%), Gaps = 14/261 (5%)

Query: 101 FFRWAGRGQRLSPYAW-NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159
           FF     G  +    W N++ D+      + +M N    +  DG     ++  +   +  
Sbjct: 241 FFPLTAEGFNIILDGWCNVITDIAEAKRIWREMSNYC--ITPDGT----SYTLMVSCFAK 294

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G   + +  +D M   G    +   NSL+  + ++         F   + + + P+  +
Sbjct: 295 VGNLFDTLRVYDEMKKRGWTPSIAVYNSLIYVLTKENCMKDVQNIFTRIIDEGLQPNVKT 354

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  ++    +   ++EA     +M+   +     +L Y TFL    R + +DE LKFL+ 
Sbjct: 355 YNSMIVPLCESRKLDEARMVLEDMM--LKGIVPTILTYHTFL----RQENIDETLKFLKK 408

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           MK + C P    F   +D   +LN+  HA++LW+ M  +    P    Y  + + LIK+ 
Sbjct: 409 MKDDGCGPKSDTFLMLIDRFFQLNEPGHALKLWNEMKRY-DIRPSYSHYMSVVQGLIKHG 467

Query: 340 RVHEVEKFFHEMIKNEWQPTP 360
            +    +++ EM +N +   P
Sbjct: 468 CMQRALEYYDEMKENGFASDP 488



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 7/218 (3%)

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +  I++E +     V +A KTF  M E+F+   +  + Y + L  L + K +++A + L 
Sbjct: 179 AMVIVMERYAAANEVNKAIKTFDAM-EKFKTEADQTVFY-SLLRALCKNKNIEDAEELLL 236

Query: 279 VMKGENCFP-TLKFFSNALDILVK-LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
           V K    FP T + F+  LD     + D   A ++W  M  +    PD  +Y ++  C  
Sbjct: 237 VRK--KFFPLTAEGFNIILDGWCNVITDIAEAKRIWREMSNY-CITPDGTSYTLMVSCFA 293

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           K   + +  + + EM K  W P+     + I +L   +  +    I+  I++ G+ P   
Sbjct: 294 KVGNLFDTLRVYDEMKKRGWTPSIAVYNSLIYVLTKENCMKDVQNIFTRIIDEGLQPNVK 353

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
           + N ++V L    +L + R   E+M+ + I+   +T H
Sbjct: 354 TYNSMIVPLCESRKLDEARMVLEDMMLKGIVPTILTYH 391


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 140/325 (43%), Gaps = 10/325 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R +  A+  +VD+  +  + E+    +  M + G++  + T   + ++YC  G+   A
Sbjct: 260 GWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGA 319

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
           V  F+ M   G E +V   N+++   C    +  +A+  L+++++  V+PD  ++ +L+ 
Sbjct: 320 VRVFESMRFKGCEPNVWTYNAIVQGFC-NAGKVYKAMALLDQMRECGVEPDVVTYNLLIR 378

Query: 226 GWEKEGNVEEANKTFGEMVERFEWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           G   +G++  A +    ++   E N        Y   +  L +  +VDEA      ++  
Sbjct: 379 GQCIDGHIGSAFR----LLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYR 434

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P    F+  ++ L K      A    +  M+  G  PD+ TY+   E L K K   E
Sbjct: 435 GIRPNSVTFNTVINGLCKAGKFDVACTFLE-NMISAGYAPDTYTYSPFIENLCKTKGSQE 493

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
              F  EM++ + +P+ +N    I  L +     +A  IW  ++  G  P   +    + 
Sbjct: 494 GLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVR 553

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILI 428
              N GRL +      EM   R ++
Sbjct: 554 AYCNEGRLDEAENVVTEMKKCRTIV 578



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 99/225 (44%), Gaps = 6/225 (2%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G G     Y +N+++D L K G+ ++  +    ++  G+  +  TF ++ +  C AGK+D
Sbjct: 398 GNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFD 457

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAIL 223
            A    + M   G   D    +  +  +C+ +  +   L F++  ++K V P   ++ I+
Sbjct: 458 VACTFLENMISAGYAPDTYTYSPFIENLCKTKG-SQEGLFFIDEMLQKDVKPSTVNYTIV 516

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +     E N   A + +G+MV +   +P+ V+ Y T +       ++DEA   +  MK  
Sbjct: 517 INRLFNERNYGLATRIWGQMVSQ-GCSPD-VVTYTTSVRAYCNEGRLDEAENVVTEMKKC 574

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
                   ++  +D    +  +  AV +    M    + P+  T+
Sbjct: 575 RTIVDAMAYNTLIDGHTSIGQTDRAVTILK-HMTGVASMPNHFTF 618



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/311 (19%), Positives = 118/311 (37%), Gaps = 9/311 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++  + C       A     +M   G   D    NSL+   CR +        F   
Sbjct: 131 TYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKM 190

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             +    D  S+A L+EG+ + G ++EA + F EM +     P+ +  +   +  L    
Sbjct: 191 PFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ-----PD-MYTHAALVKGLCDAG 244

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           + +E L  L+ MK     PT + ++  +D+  +   +  A ++ + M    G  P  +T 
Sbjct: 245 RGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFD-SGLMPCVVTC 303

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
            ++     +  R+    + F  M     +P        +    +A +   A+ + + + E
Sbjct: 304 TIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRE 363

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--S 446
            G+ P   + N L+ G    G +    R    M    +   + T + L  A     +   
Sbjct: 364 CGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDE 423

Query: 447 MRDIFDSLERR 457
              +FD LE R
Sbjct: 424 ACSLFDGLEYR 434


>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 808

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 147/351 (41%), Gaps = 39/351 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY----------- 163
           +N M++   K GR ++    +   KE G+L +  ++  +  +YC  G Y           
Sbjct: 344 YNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIA 403

Query: 164 ------------------------DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT 199
                                   D A+M  + M   GV  D    N L+S +C+     
Sbjct: 404 EIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFP 463

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
           +  L     + + V PD   FA L++G+ + G ++EA K F +++ R   +P  ++ Y  
Sbjct: 464 AMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIF-KVIIRKGVDP-GIVGYNA 521

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH 319
            +    +  ++ +AL  L  MK  +  P    +S  +D  VK +D + A++++  MM  H
Sbjct: 522 MIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMK-H 580

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
              P+ +TY  +     K   +   EK F  M   +  P  +   T +     A +PE A
Sbjct: 581 KFKPNVITYTSLINGFCKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKA 640

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
             I+  +L NG  P +A+ + L+ GL N      +    + M N R LI +
Sbjct: 641 TSIFELMLMNGCPPNDATFHYLINGLTNTATSPVLIEEKDSMENERSLILD 691



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 149/330 (45%), Gaps = 21/330 (6%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           RW G+G       +N+++D   K G  +     ++ +K  GVL ++ T+ ++ + +C AG
Sbjct: 227 RW-GKGCVPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAG 285

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           +++        M+  G+  +V   N+++ A  +     ++A E + R+ ++   PD  ++
Sbjct: 286 EFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFKY-GLVTKAAETMRRMAEMGCGPDITTY 344

Query: 221 AILLEGWEKEGNVEEAN------KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
             ++    K G ++EA+      K  G +  +F + P  + AY        +G  V  A 
Sbjct: 345 NTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTP-LMHAY------CKQGDYVKAAG 397

Query: 275 KFLRVMK-GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
              R+ + GE   P L  +   +  +V   +   A+ + + MM   G FPD+  YN++  
Sbjct: 398 MLFRIAEIGEK--PDLVSYGAFIHGVVVHGEIDVALMVREKMME-KGVFPDAQIYNVLMS 454

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L KN R   ++    EM+    QP     AT +   +   E + AI+I+  I+  G+ P
Sbjct: 455 GLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDP 514

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLN 423
                N ++ G    G+++D      +M N
Sbjct: 515 GIVGYNAMIKGFCKFGKMTDALSCLNKMKN 544



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 98/450 (21%), Positives = 173/450 (38%), Gaps = 96/450 (21%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR---GQRLSPYAWNL 118
           H   D +ES  A + ++   D+ H V+   +D+   A+ FF WA        L   A + 
Sbjct: 39  HQWQDSLESRFAESKVV-VSDVAHFVIDRVHDA-ELALKFFDWASTRPFSCSLDGVAHSS 96

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT---FASIFDSYCGAGKYDEAVMSF-DVMS 174
           ++ +L     F ++   +  MK   +   PT   F+++  +Y  +G  D A+  F  V  
Sbjct: 97  LLKLLASFRVFPEIELVLENMKAQHLK--PTREAFSALILAYGESGSLDRALQLFHTVRE 154

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG---DSF--AILLEGWEK 229
           MH     VVA NSLL+ + +   +   AL+  +++ +  D  G   D++  +I+++G   
Sbjct: 155 MHNCLPTVVASNSLLNGLVKS-GKVDVALQLYDKMLQTDDGTGAVVDNYTTSIVVKGLCN 213

Query: 230 EGNVEEANKTFGEMVERFEWNPE---HVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
            G +EE     G  + +  W      HV+ Y   +    +   +  A + L+ +K +   
Sbjct: 214 LGKIEE-----GRRLVKDRWGKGCVPHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVL 268

Query: 287 PT-----------------------------------LKFFSNALDILVKLNDSTHAVQL 311
           PT                                   +K F+N +D   K    T A + 
Sbjct: 269 PTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAET 328

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE-----MIKNEWQPTPL----- 361
               M   G  PD  TYN +     K  R+ E ++F  +     ++ N++  TPL     
Sbjct: 329 MR-RMAEMGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYC 387

Query: 362 ---NCATAITMLLDA----------------------DEPEIAIEIWNYILENGILPLEA 396
              +   A  ML                          E ++A+ +   ++E G+ P   
Sbjct: 388 KQGDYVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQ 447

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
             N L+ GL   GR   ++    EML+R +
Sbjct: 448 IYNVLMSGLCKNGRFPAMKLLLSEMLDRNV 477


>gi|255661028|gb|ACU25683.1| pentatricopeptide repeat-containing protein [Citharexylum
           montevidense]
          Length = 376

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 170/378 (44%), Gaps = 14/378 (3%)

Query: 57  CEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSP--SSAVDFFRWAGRGQRLSPY 114
           CE  A  +++ +   +A + I P   + + +L   + +    +  D +   GR    +  
Sbjct: 1   CESGAINAAERVYKEMAESKISPDAVVYNAMLNGFFKAGRIKNCFDLWELMGREGSRNVA 60

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N M+  L  NG  +++++   +MKE G V    T+  +   +C  G  ++++   ++ 
Sbjct: 61  SFNTMMRGLFNNGEVDEVFSIWELMKESGFVEDSTTYGILVHGFCKNGYNNKSLHVLEIA 120

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
              G   D  A ++++S +C+   +  +A+  LN  ++    P+   +  L+ G      
Sbjct: 121 KQEGGALDAFAYSAMISGLCKM-GKLDKAVSVLNGMIESGCKPNTQVYNALINGLLGASK 179

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            E+A + F E+  R   +P  ++ Y T +  L +G++  EA   ++ M  +   P++  +
Sbjct: 180 FEDAIRVFKELGTR-HCSPT-IVTYNTLINGLCKGERFAEAYDLVKEMLEKGWNPSVITY 237

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           S  +  L + +    A+QLW+  ++  G  PD   +N++   L    +     + + +M 
Sbjct: 238 SLLIKGLCQDHKVEMALQLWN-QVISKGFKPDVQMHNILIHGLCSVGKTEHASELYFDM- 295

Query: 353 KNEWQPTPLNCATAITML---LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
            N W   P N  T  T++       +   A+ IW  IL NG+LP   S N  L GL    
Sbjct: 296 -NHWNCAP-NLVTYNTLMEGFYKGGDTRNALVIWARILRNGLLPDIISYNITLKGLCACN 353

Query: 410 RLSDVRRFAEEMLNRRIL 427
           R+S    F  + + + I+
Sbjct: 354 RISVAILFLNDAVTKNIV 371



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/335 (20%), Positives = 137/335 (40%), Gaps = 40/335 (11%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
            ++SP A  +N M++   K GR +  ++   +M  +G  ++ +F ++       G+ DE 
Sbjct: 19  SKISPDAVVYNAMLNGFFKAGRIKNCFDLWELMGREGSRNVASFNTMMRGLFNNGEVDEV 78

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
              +++M   G  +D      L+   C+     +++L  L   K+               
Sbjct: 79  FSIWELMKESGFVEDSTTYGILVHGFCKN-GYNNKSLHVLEIAKQ--------------- 122

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
              EG   +A                   AY   +  L +  ++D+A+  L  M    C 
Sbjct: 123 ---EGGALDA------------------FAYSAMISGLCKMGKLDKAVSVLNGMIESGCK 161

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P  + ++  ++ L+  +    A++++  +   H + P  +TYN +   L K +R  E   
Sbjct: 162 PNTQVYNALINGLLGASKFEDAIRVFKELGTRHCS-PTIVTYNTLINGLCKGERFAEAYD 220

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
              EM++  W P+ +  +  I  L    + E+A+++WN ++  G  P     N L+ GL 
Sbjct: 221 LVKEMLEKGWNPSVITYSLLIKGLCQDHKVEMALQLWNQVISKGFKPDVQMHNILIHGLC 280

Query: 407 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
           ++G+         +M +       VT + L + FY
Sbjct: 281 SVGKTEHASELYFDMNHWNCAPNLVTYNTLMEGFY 315


>gi|255660894|gb|ACU25616.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 481

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 134/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  +   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-SSKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE  N+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETXNRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPT 289



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K+G V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETXNRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284


>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
 gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 159/365 (43%), Gaps = 44/365 (12%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP+LV +VL+  +     A+ FF+          S  +++  +D+ G+   ++ +W  V 
Sbjct: 77  TPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSASSFDHAIDIAGRMRDYKTVWALVA 136

Query: 138 VMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
            M+   +  S  TFA I + +  AGK D A+  F  M  HG  QD+ + N++L  +C+ +
Sbjct: 137 RMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSK 196

Query: 197 ----------------------------------NQTSRALEFLNR-VKKIVDPDGDSFA 221
                                              +T +ALE L   V++ + P   ++ 
Sbjct: 197 RVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYN 256

Query: 222 ILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           ILL+G+ + G ++EA + F +M ER  E +   V+ Y T +       ++  A K    M
Sbjct: 257 ILLKGYFRAGQLKEAWEFFLQMKEREVEID---VVTYTTMVHGFGVVGEIKRARKVFNEM 313

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
            GE   P+   ++  + +L K +   +AV +++  MV  G  P+  TYN++   L     
Sbjct: 314 VGEGILPSTATYNAMIQVLCKKDSVENAVLMFE-EMVKKGYVPNLTTYNVVIRGLFHAGN 372

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           + +  +F   M  +  +P       AI    DA + E  + ++   +  G LP   + N 
Sbjct: 373 MDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEK-MGQGSLPNLDTYNV 431

Query: 401 LLVGL 405
           L+  +
Sbjct: 432 LISAM 436



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 29/225 (12%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + P   +FAI+ E +   G  + A K F  M E     P+ + ++ T L  L + K+V+ 
Sbjct: 143 IGPSSKTFAIIAERFVAAGKPDRAIKVFLSMRE--HGCPQDLHSFNTILDILCKSKRVEM 200

Query: 273 ALK-FLRVMKGE------------NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH 319
           A     +V++G+            N +  +K    AL++L +              MV  
Sbjct: 201 AYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKE--------------MVER 246

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
           G  P   TYN++ +   +  ++ E  +FF +M + E +   +   T +       E + A
Sbjct: 247 GLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRA 306

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +++N ++  GILP  A+ N ++  L     + +     EEM+ +
Sbjct: 307 RKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKK 351



 Score = 42.4 bits (98), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 75/177 (42%), Gaps = 3/177 (1%)

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M+     P+ K F+   +  V       A++++ + M  HG   D  ++N I + L K+K
Sbjct: 138 MRARRIGPSSKTFAIIAERFVAAGKPDRAIKVF-LSMREHGCPQDLHSFNTILDILCKSK 196

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           RV        ++++ +++   ++                A+E+   ++E G+ P   + N
Sbjct: 197 RVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYN 256

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSL 454
            LL G    G+L +   F  +M  R + I  VT   +   F    E +  R +F+ +
Sbjct: 257 ILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEM 313


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 161/369 (43%), Gaps = 43/369 (11%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +R+SP    ++ ++  L K    ++    +  M ++GV+ +  T+ SI   YC + +  E
Sbjct: 225 RRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKE 284

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     M   GVE DVV  NSL+  +C+    T     F +  K+ ++PD  ++  LL+
Sbjct: 285 AIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQ 344

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P+H + +   +    + ++VDEA+     M+    
Sbjct: 345 GYATKGALVEMHALLDLMV-RNGIHPDHHV-FNILICAYAKQEKVDEAMLVFSKMRQHGL 402

Query: 286 FPTLKFFSNALDILVK---LNDS----------------------THAVQLWD------- 313
            P +  +   + IL K   ++D+                       H++ ++D       
Sbjct: 403 NPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEE 462

Query: 314 --IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
             + M+  G   +++ +N I     K  RV E EK F  M++   +P  +  +T I    
Sbjct: 463 LILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYC 522

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RIL 427
            A + + A ++ + +   G+ P   + N L+ G   + R+ D     +EM++      I+
Sbjct: 523 LAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNII 582

Query: 428 IYEVTMHKL 436
            Y + +  L
Sbjct: 583 TYNIILQGL 591



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 143/313 (45%), Gaps = 20/313 (6%)

Query: 94  SPSSAVDFFRWAGRGQ--RLSP--YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLP 148
           SP++AV  +    R    +++P  + + +++    + GR +  + A+  V+K+   +   
Sbjct: 64  SPAAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAI 123

Query: 149 TFASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           TF  +    C   +  +A+ +    M+      DV +   LL  +C  EN++  ALE L+
Sbjct: 124 TFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLC-DENRSQEALELLH 182

Query: 208 RVK----KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            +         PD  S+  ++ G+ KEG+ ++A  T+ EM++R   +P+ V+ Y + +  
Sbjct: 183 MMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDR-RISPD-VVTYSSIIAA 240

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L +G+ +D+A++ L  M      P    +++ L           A+     M    G  P
Sbjct: 241 LCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRS-DGVEP 299

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE-- 381
           D +TYN + + L KN R  E  K F  M K   +P   + AT  T+L         +E  
Sbjct: 300 DVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEP---DIATYCTLLQGYATKGALVEMH 356

Query: 382 -IWNYILENGILP 393
            + + ++ NGI P
Sbjct: 357 ALLDLMVRNGIHP 369



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 82/404 (20%), Positives = 171/404 (42%), Gaps = 15/404 (3%)

Query: 45  DAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFF 102
           D    SS    +C+  A   + ++ + +   G++P     + +L    S + P  A+ F 
Sbjct: 230 DVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFL 289

Query: 103 RWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           +   R   + P    +N ++D L KNGR  +       M + G+   + T+ ++   Y  
Sbjct: 290 KKM-RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYAT 348

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G   E     D+M  +G+  D    N L+ A  +QE      L F    +  ++P+  +
Sbjct: 349 KGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVT 408

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LR 278
           +  ++    K G+V++A   F +M++  E    +++ Y + + +L    + D+A +  L 
Sbjct: 409 YGAVIGILCKSGSVDDAMLYFEQMID--EGLTPNIIVYTSLIHSLCIFDKWDKAEELILE 466

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
           ++    C  T+ FF++ +    K      + +L+D +MV  G  P+ +TY+ + +     
Sbjct: 467 MLDRGICLNTI-FFNSIIHSHCKEGRVIESEKLFD-LMVRIGVKPNVITYSTLIDGYCLA 524

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
            ++ E  K    M     +P  +   T I         + A+ ++  ++ +G+ P   + 
Sbjct: 525 GKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 584

Query: 399 NELLVGLRNLGRLSDVRRF----AEEMLNRRILIYEVTMHKLKK 438
           N +L GL +  R +  +       +      +  Y + +H L K
Sbjct: 585 NIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCK 628



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 126/292 (43%), Gaps = 10/292 (3%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           R   L+P    +  ++ +L K+G  +        M ++G+  ++  + S+  S C   K+
Sbjct: 398 RQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKW 457

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFA 221
           D+A      M   G+  + +  NS++ + C++    ++ +  + + R+   V P+  +++
Sbjct: 458 DKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIG--VKPNVITYS 515

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++G+   G ++EA K    M       P+ V  Y T +    R  ++D+AL   + M 
Sbjct: 516 TLIDGYCLAGKMDEATKLLSSMFS-VGMKPDCV-TYNTLINGYCRVSRMDDALALFKEMV 573

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
                P +  ++  L  L     +  A +L+ + +   G   +  TYN+I   L KN   
Sbjct: 574 SSGVSPNIITYNIILQGLFHTRRTAAAKELY-VGITKSGTQLELSTYNIILHGLCKNNLT 632

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            E  + F  +   + Q         I  LL     + A +++  +  NG++P
Sbjct: 633 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 684



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 12/236 (5%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG  L+   +N ++    K GR  +      +M   GV  ++ T++++ D YC AGK DE
Sbjct: 470 RGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDE 529

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A      M   G++ D V  N+L++  CR          F   V   V P+  ++ I+L+
Sbjct: 530 ATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQ 589

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G         A + +  + +        +  Y   L  L +    DEAL+  + +    C
Sbjct: 590 GLFHTRRTAAAKELYVGITK--SGTQLELSTYNIILHGLCKNNLTDEALRMFQNL----C 643

Query: 286 FPTLKFFSNALDI----LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
              L+  +   +I    L+K+  +  A  L+  +   +G  PD  TY+++ E LI+
Sbjct: 644 LTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA-NGLVPDVRTYSLMAENLIE 698



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 128/303 (42%), Gaps = 13/303 (4%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDS 219
           ++A   F+ +   G    +  +N  L+ + R     + A+   NR+ +     V P   +
Sbjct: 32  EDARHVFEELLRRGRGASIYGLNRALADVARH--SPAAAVSRYNRMARAGAGKVTPTVHT 89

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LR 278
           + IL+    + G ++      G +V++  +  E  + +   L  L   K+  +A+   LR
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVVKK-GFRVE-AITFTPLLKGLCADKRTSDAMDIVLR 147

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM--VFHGAFPDSLTYNMIFECLI 336
            M   +C P +   +  L  L   N S  A++L  +M      G+ PD ++Y  +     
Sbjct: 148 RMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFF 207

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           K     +    +HEM+     P  +  ++ I  L      + A+E+   +++NG++P   
Sbjct: 208 KEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCM 267

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSL 454
           + N +L G  +  +  +   F ++M +  +    VT + L        RS   R IFDS+
Sbjct: 268 TYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSM 327

Query: 455 ERR 457
            +R
Sbjct: 328 TKR 330


>gi|242082131|ref|XP_002445834.1| hypothetical protein SORBIDRAFT_07g026590 [Sorghum bicolor]
 gi|241942184|gb|EES15329.1| hypothetical protein SORBIDRAFT_07g026590 [Sorghum bicolor]
          Length = 426

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 126/299 (42%), Gaps = 15/299 (5%)

Query: 129 FEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           F  +W+    M+  G+ LS  TF+++  SY  +   D+AV  F+ +   G  Q     N+
Sbjct: 127 FPHLWSLASDMRGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNA 186

Query: 188 LLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           LL A+C   N T  A + L R+ +K V PD  +F+ L++ W   G + EA     +M  R
Sbjct: 187 LLDALCANGNFTG-AYKLLRRMARKGVAPDRATFSTLVDSWCAAGKLNEAQAFLDDMASR 245

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P  V   +  +  L+R   ++EA  F   M  E   P +  F++  + L    D  
Sbjct: 246 GFRPP--VRGRDLLVDGLVRAGHLEEAKAFALRMTKEGILPDVATFNSLAEALCNAGDVD 303

Query: 307 HAVQLWDIMMVFHGAFPD---SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
            AV L        G  PD   +  Y  I + L K  R  +   FF +M      P     
Sbjct: 304 FAVALLADASS-RGLCPDISHTSLYAAIIKALCKAGRFADAFAFFGDMKMKGHPPNRPVY 362

Query: 364 ATAITMLLDADEPEIAIEIWNYIL---ENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
              + M +        +E  NY++   E G  P   + N ++ GLR+ G+    RR  +
Sbjct: 363 VMLVKMCVRGGR---FVEAANYLVEMSEAGFTPRAPTFNAVVDGLRHCGKHDLARRLEQ 418


>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
          Length = 514

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 160/343 (46%), Gaps = 18/343 (5%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYD 164
           G  +SP  Y  N++V+   +  +     + +  M + G+   + T +S+ + +C +    
Sbjct: 116 GIEISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIK 175

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAIL 223
           +AV     M   G+++DVV    L+  +C+       ALE L R+K + + P+  +++ L
Sbjct: 176 DAVYVAGQMEKMGIKRDVVVDTILIDTLCKNR-LVVPALEVLKRMKDRGISPNVVTYSSL 234

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI-RGK--QVDEALKFLRVM 280
           + G  K G + +A +   EM  + + NP +V+ +   +     RGK  +VD   K +  M
Sbjct: 235 ITGLCKSGRLADAERRLHEMDSK-KINP-NVITFSALIDAYAKRGKLSKVDSVYKMMIQM 292

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
             +   P +  +S+ +  L   N    A+++ D +M+  G  P+ +TY+ +     K+ R
Sbjct: 293 SID---PNVFTYSSLIYGLCMHNRVDEAIKMLD-LMISKGCTPNVVTYSTLANGFFKSSR 348

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           V +  K   +M +       ++C T I     A + ++A+ ++ Y+  NG++P   S N 
Sbjct: 349 VDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNI 408

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA 439
           +L GL   G +       E M   R    I+ Y + +H + KA
Sbjct: 409 VLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKA 451



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 112/270 (41%), Gaps = 42/270 (15%)

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEA 236
           +  D+   N L++  CR   Q S AL +L ++ K+ ++PD  + + L+ G+    ++++A
Sbjct: 119 ISPDLYTCNILVNCFCRCF-QPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDA 177

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLI-TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
               G+M E+     + V+  +T LI TL + + V  AL+ L+ MK              
Sbjct: 178 VYVAGQM-EKMGIKRDVVV--DTILIDTLCKNRLVVPALEVLKRMKDR------------ 222

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
                                   G  P+ +TY+ +   L K+ R+ + E+  HEM   +
Sbjct: 223 ------------------------GISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKK 258

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
             P  +  +  I       +      ++  +++  I P   + + L+ GL    R+ +  
Sbjct: 259 INPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAI 318

Query: 416 RFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           +  + M+++      VT   L   F+  SR
Sbjct: 319 KMLDLMISKGCTPNVVTYSTLANGFFKSSR 348


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 125/265 (47%), Gaps = 10/265 (3%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           N++VD L +     +    +R ++ DGV   ++ TF S+   YC AGK ++A+  ++ M 
Sbjct: 290 NILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMV 349

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G+  + V  N L++   +  +  S A+E   ++ ++   PD  +F+ L++G+ + G +
Sbjct: 350 ASGIMPNTVTYNVLINGYGKVGDLGS-AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQL 408

Query: 234 EEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK-GENCFPTLKF 291
           ++A + + +M + R + N   V  +   + +L +  + DEA+  L  +    +  P    
Sbjct: 409 DDALRIWSDMAQHRIQPN---VYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFI 465

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +D+L K      A  L    M   G  PD  TY ++        R+ E   FFHEM
Sbjct: 466 YNPVIDVLCKCGKVDEA-NLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEM 524

Query: 352 IKNEWQPTPLNCATAITMLLDADEP 376
           ++    P  +     I+ LL A  P
Sbjct: 525 VEAGCSPDSITVNCFISCLLKAGMP 549



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 15/205 (7%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFD 171
           +N++++  GK G    + +AV V ++   L  P    TF+S+ D YC  G+ D+A+  + 
Sbjct: 360 YNVLINGYGKVG---DLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWS 416

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR--VKKIVDPDGDSFAILLEGWEK 229
            M+ H ++ +V   + ++ ++C+Q N++  A+  LN   ++  + P    +  +++   K
Sbjct: 417 DMAQHRIQPNVYTFSIIIHSLCKQ-NRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCK 475

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-- 287
            G V+EAN     M E+    P+    Y   +I      ++ EA+ F   M    C P  
Sbjct: 476 CGKVDEANLIRKGMEEK-GCRPDK-YTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDS 533

Query: 288 -TLKFFSNALDILVKLNDSTHAVQL 311
            T+  F + L      N+  H ++L
Sbjct: 534 ITVNCFISCLLKAGMPNEVDHVMRL 558



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/325 (20%), Positives = 128/325 (39%), Gaps = 55/325 (16%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQM------WNAVRVMKEDGVLSLPTFASIFDSYCGAG 161
           G R+  YA+N ++  L   GR   +      W   RV   D    + +F  +    C  G
Sbjct: 210 GCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPD----VWSFNVVIKGVCRVG 265

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDS 219
           +  +A+   + M+  G   D V  N L+  +CR  N+ SR  E L R+++  +  P+  +
Sbjct: 266 QVQKALELVERMNEFGCSPDTVTHNILVDGLCR-TNEVSRGHEVLRRLQRDGVCMPNVVT 324

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  ++ G+ K G +E+A   + +MV                                   
Sbjct: 325 FTSVISGYCKAGKLEDAMAVYNDMV----------------------------------- 349

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
                  P    ++  ++   K+ D   AV+++  M       PD +T++ + +   +  
Sbjct: 350 --ASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCP-PDVVTFSSLIDGYCRCG 406

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI-LENGILPLEASA 398
           ++ +  + + +M ++  QP     +  I  L   +  + AI + N + L   I P     
Sbjct: 407 QLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIY 466

Query: 399 NELLVGLRNLGRLSD---VRRFAEE 420
           N ++  L   G++ +   +R+  EE
Sbjct: 467 NPVIDVLCKCGKVDEANLIRKGMEE 491



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/293 (19%), Positives = 118/293 (40%), Gaps = 20/293 (6%)

Query: 158 CGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSAICRQENQT-------SRALEFLNRV 209
           C +G+  +A+  FD M+ H G   D   ++ L+S+ C   N         S+A EF  RV
Sbjct: 155 CRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSS-CTCANLLDASATLLSKASEFGCRV 213

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           +        ++  L+      G V +    F   ++   ++P+ V ++   +  + R  Q
Sbjct: 214 EAY------AYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPD-VWSFNVVIKGVCRVGQ 266

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           V +AL+ +  M    C P     +  +D L + N+ +   ++   +       P+ +T+ 
Sbjct: 267 VQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFT 326

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
            +     K  ++ +    +++M+ +   P  +     I       +   A+E++  +   
Sbjct: 327 SVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRL 386

Query: 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKK 438
              P   + + L+ G    G+L D  R   +M   RI      + + +H L K
Sbjct: 387 RCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 439



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 112/271 (41%), Gaps = 15/271 (5%)

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEG 231
           S H  +Q +V        +CR   Q   AL+  +++       PD    + L+       
Sbjct: 143 SAHSCQQIIVV-------LCRSGRQAD-ALQLFDQMTTHYGYSPDARFLSFLVSSCTC-A 193

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLI-RGKQVDEALKFLRVMKGENCFPTLK 290
           N+ +A+ T       F    E   AY   + +LI RG+  D    F R ++     P + 
Sbjct: 194 NLLDASATLLSKASEFGCRVE-AYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVW 252

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            F+  +  + ++     A++L + M  F G  PD++T+N++ + L +   V    +    
Sbjct: 253 SFNVVIKGVCRVGQVQKALELVERMNEF-GCSPDTVTHNILVDGLCRTNEVSRGHEVLRR 311

Query: 351 MIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           + ++    P  +   + I+    A + E A+ ++N ++ +GI+P   + N L+ G   +G
Sbjct: 312 LQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVG 371

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
            L       ++M   R     VT   L   +
Sbjct: 372 DLGSAVEVYQQMTRLRCPPDVVTFSSLIDGY 402


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 122/247 (49%), Gaps = 9/247 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++D L   G+     + ++ M+ +G   S  T+ +I D+ C   + +EA   FD M 
Sbjct: 443 YNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMD 502

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
            HG+ +  V  N+L+  +C+ + +   A E + + VK+ + P   ++  +L  + K+G++
Sbjct: 503 AHGISRSAVTFNTLIDGLCKAK-RIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDL 561

Query: 234 EEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++A      M    FE +   V+ Y T +  L +  +   ALK LR M+ +   PT K +
Sbjct: 562 KKAADILETMTANGFEID---VVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAY 618

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR-VHEVEKFFHEM 351
           +  +  L + N+   A+ L+  M    G  PD+LTY ++F  L +    + E   F  EM
Sbjct: 619 NPVIQSLFRRNNLRDALSLFREMTEV-GEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEM 677

Query: 352 IKNEWQP 358
           +   + P
Sbjct: 678 VNKGFMP 684



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 92/436 (21%), Positives = 166/436 (38%), Gaps = 77/436 (17%)

Query: 95  PSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFA 151
           P +A+     A   +  +P    +  ++  LG  G F+ M   VR M+ +G         
Sbjct: 69  PEAALQMLNSALAREDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVR 128

Query: 152 SIFDSYCGAGKYDEAV------------------------------------MSFDVMSM 175
           S  +SY    ++D+AV                                      ++ M+ 
Sbjct: 129 SFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTD 188

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            G++ DVV +N+L+ A+CR     +  L         V PD  +F  L++G+ +EG++E 
Sbjct: 189 RGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEA 248

Query: 236 ANKTFGEMVE---------------------RFE-------------WNPEHVLAYETFL 261
           A +   +M+E                     R E             + P+ V  Y TF+
Sbjct: 249 ALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQV-TYNTFV 307

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             L +   V  ALK + +M  E   P +  ++  ++ L K  +   A  + +  MV  G 
Sbjct: 308 HCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVN-QMVDRGC 366

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            PD+ T+N +   L    R+ E      E+      P        I  L    +P + I 
Sbjct: 367 LPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIR 426

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
           ++  +  +G  P E + N L+  L ++G+L +     +EM +       VT + +  A  
Sbjct: 427 LFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALC 486

Query: 442 NESR--SMRDIFDSLE 455
            + R     ++FD ++
Sbjct: 487 KQMRIEEAEEVFDQMD 502



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 137/309 (44%), Gaps = 7/309 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           T   + + YC  G+ ++A+         G E D V  N+ +  +C Q    S AL+ ++ 
Sbjct: 267 TVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLC-QNGHVSHALKVMDL 325

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +++  DPD  ++  ++    K G ++EA     +MV+R    P+    + T ++ L   
Sbjct: 326 MLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDR-GCLPD-TTTFNTLIVALCSQ 383

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +++EAL   R +  +   P +  F+  ++ L K+ D    ++L++ M    G  PD +T
Sbjct: 384 NRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKS-SGCAPDEVT 442

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN++ + L    ++        EM  N    + +   T I  L      E A E+++ + 
Sbjct: 443 YNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMD 502

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES--R 445
            +GI     + N L+ GL    R+ D     E+M+   +    +T + +   +  +   +
Sbjct: 503 AHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLK 562

Query: 446 SMRDIFDSL 454
              DI +++
Sbjct: 563 KAADILETM 571



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 129/297 (43%), Gaps = 6/297 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  V  L +NG        + +M ++G    + T+ ++ +     G+ DEA    + M 
Sbjct: 303 YNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMV 362

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D    N+L+ A+C Q N+   AL+    +  K + PD  +F IL+    K G+ 
Sbjct: 363 DRGCLPDTTTFNTLIVALCSQ-NRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDP 421

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
               + F EM +     P+ V  Y   +  L    ++  AL  L+ M+   C  +   ++
Sbjct: 422 HLGIRLFEEM-KSSGCAPDEV-TYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYN 479

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D L K      A +++D  M  HG    ++T+N + + L K KR+ +  +   +M+K
Sbjct: 480 TIIDALCKQMRIEEAEEVFD-QMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVK 538

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
              QP+ +   + +T      + + A +I   +  NG      +   L+ GL   GR
Sbjct: 539 EGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGR 595



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/348 (20%), Positives = 139/348 (39%), Gaps = 40/348 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N +++ L KNG  ++    V  M + G L    TF ++  + C   + +EA+     
Sbjct: 336 FTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARE 395

Query: 173 MSMHGVEQDVVAVNSLLSAICR-----------QENQTS--------------------- 200
           +++ G+  DV   N L++A+C+           +E ++S                     
Sbjct: 396 LTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGK 455

Query: 201 --RALEFLNRVKKIVDPDGD-SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
              AL+ L  ++    P    ++  +++   K+  +EEA + F +M           + +
Sbjct: 456 LVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQM--DAHGISRSAVTF 513

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
            T +  L + K++D+A + +  M  E   P+   +++ L    K  D   A  + + M  
Sbjct: 514 NTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTA 573

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
            +G   D +TY  +   L K  R     K    M     +PTP      I  L   +   
Sbjct: 574 -NGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLR 632

Query: 378 IAIEIWNYILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNR 424
            A+ ++  + E G  P   +   +  GL R  G + +   F  EM+N+
Sbjct: 633 DALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNK 680


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 147/347 (42%), Gaps = 6/347 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F   A +G   S    N ++  L K    +  +    +M   GV   +  F+++ +++C 
Sbjct: 150 FSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCT 209

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGD 218
            G+ D+A+  F  M   GV  +VV  N+++  +C+   +   A +F  +++K  V P   
Sbjct: 210 GGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKN-GRLDEAFQFKEKMEKERVKPSLV 268

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ +L+ G  K    +EAN    EM +R  + P +V+ Y T +    R   +  AL+   
Sbjct: 269 TYGVLINGLVKLERFDEANCILKEMSDR-GYAPNNVV-YNTLIDGYCRIGNISTALQIRD 326

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M      P     ++ +    K N   HA  L + M+   G      T+  +   L   
Sbjct: 327 DMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQG-TFTSVIHRLCLK 385

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
            R      F  EM+   ++P        ++ L    +   AIE+W  +LE G      ++
Sbjct: 386 CRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTS 445

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           N L+ GL   G   +  +  +EML R +++  ++ + L  A   E +
Sbjct: 446 NALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGK 492



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 131/296 (44%), Gaps = 9/296 (3%)

Query: 131 QMWNAVRVMKE----DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           QM +A  +++E     GV++  TF S+    C   ++D A++    M +   + +   + 
Sbjct: 352 QMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLT 411

Query: 187 SLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
            L+S +C Q  + S A+E   R+ +K    +  +   L+ G  + G+ EEA K   EM+E
Sbjct: 412 LLVSGLC-QNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLE 470

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
           R        ++Y T ++   +  +V+E  K    M      P +  ++  L  L  +   
Sbjct: 471 RGLVLDS--ISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKI 528

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
             A  LW      +G FPD+ TY ++ +   K  RV E EK F EM+  + +   +   T
Sbjct: 529 EEAGGLWHECKK-NGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGT 587

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            I    +      A  + + +   GI    A+ + L+ GL N+G +    +  +EM
Sbjct: 588 LIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEM 643



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 156/394 (39%), Gaps = 47/394 (11%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A++ FR   + G   +   +N ++  L KNGR ++ +     M+++ V  SL T+  + +
Sbjct: 216 AIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLIN 275

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVD 214
                 ++DEA      MS  G   + V  N+L+   CR  N  S AL+  +  +   + 
Sbjct: 276 GLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGN-ISTALQIRDDMISNGIS 334

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR---GKQVD 271
           P+  +   L++G+ K   +E A     EM+         V+   TF   + R     + D
Sbjct: 335 PNSVTCNSLIQGYCKSNQMEHAEHLLEEML-----TGGGVINQGTFTSVIHRLCLKCRFD 389

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM---------------- 315
            AL F+  M   N  P     +  +  L +    + A++LW  +                
Sbjct: 390 SALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALI 449

Query: 316 ------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
                             M+  G   DS++YN +     K  +V E  K   EM++   Q
Sbjct: 450 HGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQ 509

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
           P        +  L +  + E A  +W+   +NG  P   +   ++ G     R+ +  + 
Sbjct: 510 PDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKL 569

Query: 418 AEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIF 451
            +EM+  +I    V    L +A Y E+ +MR+ F
Sbjct: 570 FQEMVTMKIEQNAVVYGTLIRA-YCENGNMREAF 602



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 10/244 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKY 163
           RG +   Y +N+++  L   G+ E+        K++G  + P   T+  + D YC A + 
Sbjct: 506 RGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNG--NFPDAYTYGIMIDGYCKANRV 563

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-SFAI 222
           +E    F  M    +EQ+ V   +L+ A C   N    A    + ++    P    +++ 
Sbjct: 564 EEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNM-REAFRLRDDMRSRGIPQTSATYSS 622

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G    G V+ AN+   EM  R E    +V+ Y   +    +  Q+ +    L+ M  
Sbjct: 623 LIHGLSNIGLVDSANQLLDEM--RKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSI 680

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
            N  P    ++  ++   KL +   A +L +  M   G  PD++TYN +     K  ++ 
Sbjct: 681 NNVHPNKITYTIMINGHCKLGNMKAAAKLLN-EMAQKGIVPDAVTYNALTNGFCKEGKME 739

Query: 343 EVEK 346
           E  K
Sbjct: 740 EALK 743


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 130/279 (46%), Gaps = 7/279 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  + D +C  G  D  +   + M  HG   DV+   ++++  C+ E     A+  L  
Sbjct: 338 TFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCK-EGLIDEAVMLLKN 396

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW-NPEHVLAYETFLITLIR 266
           +      P+  S+ I+L+G        +A +    M+++    NP   + + T +  L +
Sbjct: 397 MPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNP---VTFNTIINFLCK 453

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
              V++A++ L+ M    C P L  +S  +D L K   +  A++L ++M +  G  P+ +
Sbjct: 454 KGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVM-INKGITPNVI 512

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           TY+ +   L +  R+ +V + F  +     +   +     I+ L    E ++AI+   Y+
Sbjct: 513 TYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYM 572

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
           + NG +P E++   L+ GL + G L + +    E+ +RR
Sbjct: 573 VSNGCMPNESTYTALIKGLASEGLLCEAQDLLSELCSRR 611



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/395 (21%), Positives = 163/395 (41%), Gaps = 21/395 (5%)

Query: 78  IPTPDLVHEVLQLSYDSP--SSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           +P P + H +++ +  S   SSA+        +G  L     NL+++ +   G  ++   
Sbjct: 148 VPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLE 207

Query: 135 AVRVMKEDGV-LSLPTFASIFDSYCGAGKY-------DEAVM---SFDVMSMHGVEQDVV 183
            +R +   G    + ++ ++    C A ++       DE V    +   M+ HG   D+ 
Sbjct: 208 MLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIR 267

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
              +++  IC+ E     A E L+R+    + P+   +  +L+G       E+A +   E
Sbjct: 268 MYATIIDGICK-EGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTE 326

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M ++    P   + +   +    +   VD  ++ L  M    C P +  ++  ++   K 
Sbjct: 327 MYQKN--CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKE 384

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                AV L    M   G  P++++Y ++ + L   +R  + E+    MI+    P P+ 
Sbjct: 385 GLIDEAVMLLK-NMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVT 443

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
             T I  L      E AIE+   +L NG  P   S + ++ GL   G+  +       M+
Sbjct: 444 FNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMI 503

Query: 423 NRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLE 455
           N+ I    +T   +  A   E R   +  +FD+++
Sbjct: 504 NKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQ 538


>gi|224085974|ref|XP_002307761.1| predicted protein [Populus trichocarpa]
 gi|222857210|gb|EEE94757.1| predicted protein [Populus trichocarpa]
          Length = 563

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 162/358 (45%), Gaps = 8/358 (2%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY--AWNLMVDVLGK 125
           IE AL    +  + D+V EVL        + + FF WA +   +S    ++N+++  LG+
Sbjct: 120 IERALTECSVDLSLDVVAEVLNRGNLGGEAMIMFFNWAIKQPMISKDVDSYNVVIRALGR 179

Query: 126 NGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF-DVMSMHGVEQDVV 183
               + M   +  ++ +GV ++  TF+ + DS   A +  +A+  F ++    G E+D  
Sbjct: 180 RKFIDFMVKFLHELRVEGVSMNSETFSIVIDSLVRARRVYKAIQMFGNLEEEFGFERDAE 239

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           ++N LL  +CR+ +    A  + N VK  +  +  ++ +++ GW K G V E  + F EM
Sbjct: 240 SLNVLLQCLCRR-SHVGAANSYFNSVKGKIPFNCMTYNVIIGGWSKFGRVSEMQRVFEEM 298

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
            E   ++P+  L++   L  L R  ++++A+     M+ + C P    ++  +   + + 
Sbjct: 299 -EEDGFSPD-CLSFSYLLEGLGRAGKIEDAVMIFGSMEEKGCVPDTNVYNAMISNFISVG 356

Query: 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
           +    ++ +  ++      P+  TY  +   LIK  +V +  + F EM+           
Sbjct: 357 NFDECMKYYRCLLS-KNCDPNIDTYTRMISGLIKASKVADALEMFDEMLDRGMVTKTGTV 415

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            + I  L     P  A+ I+    + G     ++   LL+ L   G+   + +  +EM
Sbjct: 416 TSFIEPLCSFGPPHAAMVIYTKARKVGCKISLSAYKLLLMRLSRFGKCGMMLKIWDEM 473



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 105/270 (38%), Gaps = 4/270 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N+++    K GR  +M      M+EDG      +F+ + +    AGK ++AVM F  M
Sbjct: 274 TYNVIIGGWSKFGRVSEMQRVFEEMEEDGFSPDCLSFSYLLEGLGRAGKIEDAVMIFGSM 333

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   D    N+++S      N       +   + K  DP+ D++  ++ G  K   V
Sbjct: 334 EEKGCVPDTNVYNAMISNFISVGNFDECMKYYRCLLSKNCDPNIDTYTRMISGLIKASKV 393

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A + F EM++R        +   +F+  L        A+      +   C  +L  + 
Sbjct: 394 ADALEMFDEMLDRGMVTKTGTVT--SFIEPLCSFGPPHAAMVIYTKARKVGCKISLSAYK 451

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             L  L +       +++WD M    G   D   Y  +   L    +         E ++
Sbjct: 452 LLLMRLSRFGKCGMMLKIWDEMQE-SGYSSDMEVYEYLISGLCNIGQFENAVLVMEESMR 510

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIW 383
             + P+   C+     LL +++ E A  ++
Sbjct: 511 KGFCPSRFICSKLNNKLLASNKVERAYRLF 540



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 100/216 (46%), Gaps = 9/216 (4%)

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQV 270
           ++  D DS+ +++    +   ++   K   E+ VE    N E    +   + +L+R ++V
Sbjct: 162 MISKDVDSYNVVIRALGRRKFIDFMVKFLHELRVEGVSMNSE---TFSIVIDSLVRARRV 218

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVK-LNDSTHAVQLWDIMMVFHGAFP-DSLTY 328
            +A++    ++ E  F      + +L++L++ L   +H            G  P + +TY
Sbjct: 219 YKAIQMFGNLEEEFGFERD---AESLNVLLQCLCRRSHVGAANSYFNSVKGKIPFNCMTY 275

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N+I     K  RV E+++ F EM ++ + P  L+ +  +  L  A + E A+ I+  + E
Sbjct: 276 NVIIGGWSKFGRVSEMQRVFEEMEEDGFSPDCLSFSYLLEGLGRAGKIEDAVMIFGSMEE 335

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            G +P     N ++    ++G   +  ++   +L++
Sbjct: 336 KGCVPDTNVYNAMISNFISVGNFDECMKYYRCLLSK 371


>gi|255660920|gb|ACU25629.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 484

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 134/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHGSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + ++L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P    F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRFMMAKRYFNKMLSEGIEPTRHXFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K++DEA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  + G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGY-GIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYMAPT 289



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVER------TIKSYDAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRFMMAKRYFNKMLSEGIEPTRHXF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDK 284



 Score = 42.0 bits (97), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 35/260 (13%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ T+ ++   Y    + D+A+   + M  +G++ + +  ++LL  +C  E  +      
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSIL 278

Query: 206 LNRVKKIVDPDGDS-FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
              V K + P  +S F  L+    K GN++ A      M+ R    P     Y   +   
Sbjct: 279 KEMVDKYMAPTDNSIFXRLISSQCKTGNLDAAADVLKAMI-RLSV-PTEAGHYGVLIENF 336

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            +  Q D+A+K L  +  +             DI+++   + H                +
Sbjct: 337 CKAGQHDKAVKLLDKLIEK-------------DIILRPQSTLHM---------------E 368

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIW 383
              YN + E L  N +  + E    +++K   Q PT LN  T I        P+ A E+ 
Sbjct: 369 PSAYNPMIEYLCNNGQTAKAEALVRQLLKLGVQDPTALN--TLIRGHSQEGSPDSAFELL 426

Query: 384 NYILENGILPLEASANELLV 403
             +L   +   E SA + LV
Sbjct: 427 KIMLRRKV-DSEKSAYDSLV 445


>gi|116789117|gb|ABK25122.1| unknown [Picea sitchensis]
          Length = 572

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 154/335 (45%), Gaps = 18/335 (5%)

Query: 66  DDIESALACTGIIPTPDLVHEVL-QLSYDSPSSAVDFFRWAGRGQRLSPY--AWNLMVDV 122
           ++  +AL   G IP+P+LV ++L +L YD   +A   F+WAG     S     ++ M+ +
Sbjct: 124 EEARTALDDCGFIPSPNLVQKLLRRLQYDG-KAAFRVFQWAGSQPDYSHTVSVYHTMISI 182

Query: 123 LGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
           LG + +F++ W  +R M E  +++  T   +   Y  A    +A+ +F  M    +  D 
Sbjct: 183 LGVHRKFDKGWGLIRKMHERAMVNRQTLMIMIKRYAAAHDARKAIKTFHAMDKFKLAADS 242

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW-EKEGNVEEANKTFG 241
                LL A+CR       A E ++  KK    +  SF ++L GW     +V +  + + 
Sbjct: 243 DDFLCLLCALCRNMF-VEEAEELIHFNKKCYPLETKSFNVILYGWCNIFVDVYQVKRLWE 301

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM       P+   +Y T +    +  +  + ++    MK +   P LK ++  + +L K
Sbjct: 302 EM-SNLCITPD-AFSYTTVICCFSKAGKFYDVVRLYDEMKKKGFTPNLKVYNAVIYVLSK 359

Query: 302 LNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
                 A+ L++ +  M FH   P+++TY  +   L +  +  E   +  +MI   + PT
Sbjct: 360 ERCVKEALNLFNKIREMGFH---PNAVTYTYLIYLLCRTWKPEEAYSYLDKMIMEGFVPT 416

Query: 360 PLNCATAITMLLDADEPEIAI-EIWNYILENGILP 393
            ++   A    +   E E AI ++++ + ENG  P
Sbjct: 417 -IDIYHAFFRFV---ENEGAICKLFDKMFENGCAP 447



 Score = 38.5 bits (88), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 16/205 (7%)

Query: 114 YAW-NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y W N+ VDV      +E+M N    +  D      ++ ++   +  AGK+ + V  +D 
Sbjct: 284 YGWCNIFVDVYQVKRLWEEMSNLC--ITPDAF----SYTTVICCFSKAGKFYDVVRLYDE 337

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   G   ++   N+++  + + E     AL   N+++++   P+  ++  L+    +  
Sbjct: 338 MKKKGFTPNLKVYNAVIYVLSK-ERCVKEALNLFNKIREMGFHPNAVTYTYLIYLLCRTW 396

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL-KFLRVMKGENCFPTLK 290
             EEA     +M+   E     +  Y  F     R  + + A+ K    M    C PT++
Sbjct: 397 KPEEAYSYLDKMI--MEGFVPTIDIYHAFF----RFVENEGAICKLFDKMFENGCAPTME 450

Query: 291 FFSNALDILVKLNDSTHAVQLWDIM 315
            +  ++      +D  +A +LW+ M
Sbjct: 451 TYIMSIRRCCSWSDYENAFKLWNDM 475


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 6/247 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           QR+SP    +N ++  L K    ++    +  M + GV+    T+ SI   +C +G+  E
Sbjct: 110 QRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKE 169

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A++    M   GVE DVV  NSL+  +C+    T     F +  K+ + PD  ++  LL+
Sbjct: 170 AIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQ 229

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    + ++V+EA+     M+ +  
Sbjct: 230 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILVCAYAKQEKVEEAMLVFSKMRQQGL 287

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    +   +D+L K      A+  ++  M+  G  PDS+ YN +   L    +  + E
Sbjct: 288 NPNAVTYGTVIDVLCKSGRVEDAMLYFE-QMIDEGLRPDSIVYNSLIHSLCIFDKWEKAE 346

Query: 346 KFFHEMI 352
           + F EM+
Sbjct: 347 ELFLEML 353



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 147/349 (42%), Gaps = 17/349 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N++++ L    R ++    + +M +DG    P   +++++ + +   G  D+     
Sbjct: 52  FSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDK----- 106

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M    +  +VV  NS+++A+C+ +    +A+E L   VK  V PD  ++  ++ G+  
Sbjct: 107 --MLDQRISPNVVTYNSIIAALCKAQT-VDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCS 163

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G  +EA     +M  R +     V+ Y + +  L +  +  EA K    M      P +
Sbjct: 164 SGQPKEAIVFLKKM--RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDI 221

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             +   L              L D +MV +G  P+   ++++     K ++V E    F 
Sbjct: 222 TTYGTLLQGYATKGALVEMHGLLD-LMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFS 280

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           +M +    P  +   T I +L  +   E A+  +  +++ G+ P     N L+  L    
Sbjct: 281 KMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFD 340

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD--IFDSLER 456
           +         EML+R I +  +  + +  +   E R +    +FD + R
Sbjct: 341 KWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVR 389



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 13/195 (6%)

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK--GENCFPTLKF 291
           E+A   F E++ R       V +Y   L  L    +  EAL+ L +M   G +C P +  
Sbjct: 34  EDARHVFDELLRR---GIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVS 90

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S  ++   K  D           M+     P+ +TYN I   L K + V +  +    M
Sbjct: 91  YSTVINGFFKEGDLDK--------MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTM 142

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +K+   P  +   + +     + +P+ AI     +  +G+ P   + N L+  L   GR 
Sbjct: 143 VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRC 202

Query: 412 SDVRRFAEEMLNRRI 426
           ++ R+  + M  R +
Sbjct: 203 TEARKIFDSMTKRGL 217



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 108/269 (40%), Gaps = 56/269 (20%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD----- 218
           ++A   FD +   G+  DV + N LL+ +C  EN++  ALE L+    + D  GD     
Sbjct: 34  EDARHVFDELLRRGI-PDVFSYNILLNGLC-DENRSQEALELLH---IMADDGGDCPPDV 88

Query: 219 -SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            S++ ++ G+ KEG++++       + +R   N   V+ Y + +  L + + VD+A++ L
Sbjct: 89  VSYSTVINGFFKEGDLDKM------LDQRISPN---VVTYNSIIAALCKAQTVDKAMEVL 139

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M                                    V  G  PD +TYN I      
Sbjct: 140 TTM------------------------------------VKSGVMPDCMTYNSIVHGFCS 163

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
           + +  E   F  +M  +  +P  +   + +  L        A +I++ + + G+ P   +
Sbjct: 164 SGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITT 223

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
              LL G    G L ++    + M+   I
Sbjct: 224 YGTLLQGYATKGALVEMHGLLDLMVRNGI 252


>gi|255660876|gb|ACU25607.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 484

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S ++   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-SSNTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            +  M   G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VE-EMKGSGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPT 289



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +  +GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGSGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDK 284



 Score = 42.0 bits (97), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 59/301 (19%), Positives = 120/301 (39%), Gaps = 37/301 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + + +SP    +N M++   +  + E+       MK   +  ++ T+ ++   Y    + 
Sbjct: 177 KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQV 236

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS-FAI 222
           D+A+   + M   G++ + +  ++LL  +C  E  +   +     + K + P  +S F  
Sbjct: 237 DDALRLVEEMKGSGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMR 296

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+    K GN++ A      M+ R    P     Y   +    +  Q D+A+K L  +  
Sbjct: 297 LISSHCKSGNLDAAADVLKAMI-RLSV-PTEAGHYGLLIEKFCKAGQYDKAVKLLDKLIE 354

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +             DI+++   + H               P++  YN + E L  N +  
Sbjct: 355 K-------------DIILRPQSTLHLE-------------PNA--YNPMIEYLCNNGQAS 386

Query: 343 EVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
           + E    +++K   Q PT LN  T I        P+ A E+   +L   +   +++ N L
Sbjct: 387 KAETLVRQLMKLGVQDPTALN--TLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNSL 444

Query: 402 L 402
           +
Sbjct: 445 V 445


>gi|255660906|gb|ACU25622.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 484

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 133/289 (46%), Gaps = 23/289 (7%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQMWNAVRVM 139
           +LV+ VL  S  +   A+ FFRW  R           +  +++LG+  +     N  R +
Sbjct: 13  ELVYNVLH-SAKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKL----NHARCI 67

Query: 140 KEDGVLSLPT---------FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
               +L +P          +  + DSY   G   E+V  F  M   GVE+ + + N+L  
Sbjct: 68  ----LLDIPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFK 123

Query: 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
            I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +
Sbjct: 124 VILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EIS 182

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++
Sbjct: 183 PD-VVTYNTIINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALR 241

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
           L + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 242 LVEEMKGF-GIKPNAITYSTLLPGLCNAEKMTEARSILKEMMDKYLAPT 289



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 11/219 (5%)

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETFLITLI 265
           KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y      ++
Sbjct: 73  KKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVER------TIKSYNALFKVIL 126

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           R  +   A ++   M  E   PT   F N +     L+        +   M      PD 
Sbjct: 127 RRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSREISPDV 185

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TYN I     + K++ E EK+F EM     +PT +   T I   +  D+ + A+ +   
Sbjct: 186 VTYNTIINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE 245

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           +   GI P   + + LL GL N  ++++ R   +EM+++
Sbjct: 246 MKGFGIKPNAITYSTLLPGLCNAEKMTEARSILKEMMDK 284


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 154/351 (43%), Gaps = 12/351 (3%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYD 164
            RG     Y +N ++  + K G  E+    +  +   G    + ++  +  ++   GK+D
Sbjct: 245 ARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWD 304

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAIL 223
           E       M   G E + V  + L+S++CR   +   A+  L   ++K + PD  S+  L
Sbjct: 305 EGEKLVAEMFSRGCEPNKVTYSILISSLCRF-GRIDEAISVLKVMIEKELTPDTYSYDPL 363

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +    KEG ++ A      M+      P+ ++ Y T L  L +    ++AL+    ++G 
Sbjct: 364 ISALCKEGRLDLAIGIMDYMISN-GCLPD-IVNYNTILAALCKNGNANQALEIFNKLRGM 421

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
            C P +  ++  +  L    D + A+ +    M+  G  PD +TYN +  CL ++  V E
Sbjct: 422 GCPPNVSSYNTMISALWSCGDRSRALGMVP-AMISKGIDPDEITYNSLISCLCRDGLVEE 480

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
                 +M ++ ++PT ++    +  L      + AI ++  ++E G  P E +   L+ 
Sbjct: 481 AIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIE 540

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
           G+   G  ++    A  + +R + I + +  +L K F      M D++  L
Sbjct: 541 GIGFAGWRTEAMELANSLFSRDV-ISQDSFKRLNKTF-----PMLDVYKEL 585



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 140/321 (43%), Gaps = 6/321 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAG 161
           R   RG       +N+M+  L    +       + +++ ++ + ++ T+  + ++    G
Sbjct: 172 RMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEG 231

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSF 220
             +EA+   + M   G+  D+   N+++  +C+ E    RA E +  +  K  +PD  S+
Sbjct: 232 GINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK-EGMVERAAELITSLTSKGCEPDVISY 290

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            ILL  +  +G  +E  K   EM  R    P  V  Y   + +L R  ++DEA+  L+VM
Sbjct: 291 NILLRAFLNQGKWDEGEKLVAEMFSR-GCEPNKV-TYSILISSLCRFGRIDEAISVLKVM 348

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
             +   P    +   +  L K      A+ + D  M+ +G  PD + YN I   L KN  
Sbjct: 349 IEKELTPDTYSYDPLISALCKEGRLDLAIGIMD-YMISNGCLPDIVNYNTILAALCKNGN 407

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
            ++  + F+++      P   +  T I+ L    +   A+ +   ++  GI P E + N 
Sbjct: 408 ANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNS 467

Query: 401 LLVGLRNLGRLSDVRRFAEEM 421
           L+  L   G + +     ++M
Sbjct: 468 LISCLCRDGLVEEAIGLLDDM 488



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 123/283 (43%), Gaps = 12/283 (4%)

Query: 129 FEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           F+ +  A RVM+     + P    + ++   +C   + + A    + M   G   D+V  
Sbjct: 126 FKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTY 185

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVD---PDGDSFAILLEGWEKEGNVEEANKTFGE 242
           N ++ ++C +  +   AL  L+++  ++D   P   ++ IL+E    EG + EA K   E
Sbjct: 186 NIMIGSLCNRR-KLGLALTVLDQL--LLDNCMPTVITYTILIEATIVEGGINEAMKLLEE 242

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M+ R    P+ +  Y   +  + +   V+ A + +  +  + C P +  ++  L   +  
Sbjct: 243 MLAR-GLLPD-MYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQ 300

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                  +L    M   G  P+ +TY+++   L +  R+ E       MI+ E  P   +
Sbjct: 301 GKWDEGEKLV-AEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYS 359

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
               I+ L      ++AI I +Y++ NG LP   + N +L  L
Sbjct: 360 YDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAAL 402



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/295 (19%), Positives = 124/295 (42%), Gaps = 8/295 (2%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVK 210
           + +  C AGK++E++   + +   G   DV+    L+      +N  + SR +E L   +
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEIL---E 140

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
              +PD  ++  ++ G+ K   +E A +    M  R  + P+ ++ Y   + +L   +++
Sbjct: 141 SHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKAR-GFLPD-IVTYNIMIGSLCNRRKL 198

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
             AL  L  +  +NC PT+  ++  ++  +       A++L + M+   G  PD  TYN 
Sbjct: 199 GLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLA-RGLLPDMYTYNA 257

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           I   + K   V    +    +     +P  ++    +   L+  + +   ++   +   G
Sbjct: 258 IIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG 317

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             P + + + L+  L   GR+ +     + M+ + +     +   L  A   E R
Sbjct: 318 CEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGR 372


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 169/406 (41%), Gaps = 46/406 (11%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ---RLSPYAWNLMVDVLGKNGRFEQM 132
           G++PT +  + +L L      +   +  +A   +   + S Y +N+M++VL K G+ ++ 
Sbjct: 181 GVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKA 240

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            + V  M+  GV  ++ T+ +I   YC +G+ + A      M    +E D     SL+S 
Sbjct: 241 KDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISG 300

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           +C+Q      +  F   V+K + P    +  L++G+  +GN++ A+    EM+++   +P
Sbjct: 301 MCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKK-GISP 359

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
             +  Y + +  L   ++ DEA   ++ ++ +   P    ++  ++   +  ++  A  L
Sbjct: 360 T-MSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLL 418

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL---------- 361
            D M+   G  P   TY  +   L K  R+ E +  F ++      P  +          
Sbjct: 419 HDEMLA-SGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHC 477

Query: 362 ---NCATAITMLLDADEPEI----------------------AIEIWNYILENGILPLEA 396
              N   A  +L D D  ++                      A E+++ +   GI P   
Sbjct: 478 SNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHI 537

Query: 397 SANELLVGLRNLGRLSDVRRFAEEML----NRRILIYEVTMHKLKK 438
           S N L+ G    G + D  R   EML    N  +L Y   +  L K
Sbjct: 538 SFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCK 583



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/346 (19%), Positives = 136/346 (39%), Gaps = 41/346 (11%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A D      + Q++ P  + +  ++  + K GR E+       M + G+  S   + ++ 
Sbjct: 274 AADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLI 333

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIV 213
           D +C  G  D A    D M   G+   +   NSL+ A+   E +T  A   +  ++ K +
Sbjct: 334 DGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALF-MEQRTDEAECMIKEIQEKGI 392

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  ++ IL+ G+ +  N ++A     EM+      P     Y + L  L +  ++ EA
Sbjct: 393 SPDAITYNILINGYCRCANAKKAFLLHDEMLAS-GIKPTKK-TYTSLLHVLSKKNRMKEA 450

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL---------------WDIMMVF 318
               + +  E   P +  F+  +D     ++   A +L               ++ +M  
Sbjct: 451 DDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQG 510

Query: 319 H-------------------GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
           H                   G  PD +++N +     +   + +  +  +EM+   + PT
Sbjct: 511 HCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPT 570

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
            L     +  L    E ++A E+   ++  G+ P + +   L+ G+
Sbjct: 571 VLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGI 616



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 92/198 (46%), Gaps = 5/198 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + +   +  ++ VL K  R ++  +  + +  +GVL  +  F ++ D +C       A
Sbjct: 426 GIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGA 485

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
                 M    V  D V  N+++   CR E +   A E  + +K+  + PD  SF  L+ 
Sbjct: 486 FELLKDMDRMKVPPDEVTFNTIMQGHCR-EGKVEEARELFDEMKRRGIKPDHISFNTLIS 544

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ + G++++A +   EM++   +NP  VL Y   +  L + ++ D A + L+ M  +  
Sbjct: 545 GYSRRGDIKDAFRVRNEMLDT-GFNPT-VLTYNALVQGLCKNQEGDLAEELLKEMVSKGM 602

Query: 286 FPTLKFFSNALDILVKLN 303
            P    +   ++ + K+N
Sbjct: 603 TPDDTTYFTLIEGIAKVN 620



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 119/319 (37%), Gaps = 15/319 (4%)

Query: 143 GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202
           G  S   F  +  S C   + DEA   F  M   GV   +   NSLLS   +     +  
Sbjct: 147 GFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAW 206

Query: 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           + +    +  +     +F I++    KEG +++A    G M E     P +++ Y T + 
Sbjct: 207 VLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHM-ETSGVKP-NIVTYNTIVH 264

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
                 +V+ A   L  MK +   P    + + +  + K      A ++++  MV  G  
Sbjct: 265 GYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFE-EMVQKGLR 323

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL---DADEPEIA 379
           P ++ YN + +       +     +  EM+K    PT     + I  L      DE E  
Sbjct: 324 PSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECM 383

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHK 435
           I+    I E GI P   + N L+ G              +EML   I      Y   +H 
Sbjct: 384 IK---EIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHV 440

Query: 436 LKKAFYNESRSMRDIFDSL 454
           L K   N  +   D+F  +
Sbjct: 441 LSKK--NRMKEADDLFKKI 457


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 157/379 (41%), Gaps = 37/379 (9%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           +  G G  L+  +  ++V+   K GR E+    V  + E+G      TF S+ + +C  G
Sbjct: 218 QMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIG 277

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSF 220
             ++A+   D M   G + DV   NSL+S +C+   +  +A+E L + + +   P+  ++
Sbjct: 278 NVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKL-GEFEKAIEILQQMILRECSPNTVTY 336

Query: 221 AILLEGWEKEGNVEEANK---------------TFGEMVERFEWNPEHVLAYETF----- 260
             L+    KE  +E A                 TF  +++    +    +A E F     
Sbjct: 337 NTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKN 396

Query: 261 -------------LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
                        + +L   +++ EAL  L+ M+   C      ++  +D L K      
Sbjct: 397 KGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIED 456

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
           A +++D M +  G    S+TYN + + L KNKRV E  +   +MI    +P      + +
Sbjct: 457 AEEIFDQMELL-GVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLL 515

Query: 368 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           T      + E A +I   +  NG  P   +   L+ GL   GR+    +    +  + I+
Sbjct: 516 TYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIV 575

Query: 428 IYEVTMHKLKKAFYNESRS 446
           +     + + +A +   R+
Sbjct: 576 LTPHAYNPVIQALFMRKRT 594



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 153/354 (43%), Gaps = 51/354 (14%)

Query: 64  SSDDIESALACTGIIP---TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMV 120
           ++ D+   L   G++P   T + + + L LS +   +   F     +G +   + +++++
Sbjct: 351 AATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILI 410

Query: 121 DVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
           D L    R ++    ++ M+  G   +   + ++ D  C + + ++A   FD M + GV 
Sbjct: 411 DSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVS 470

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
           +  V  N+L+  +C+ + +   A + +++ + + + PD  ++  LL  + + G++E+A  
Sbjct: 471 RSSVTYNTLIDGLCKNK-RVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKA-- 527

Query: 239 TFGEMVERFEWN---PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
             G++V+    N   P+ +  Y T +  L R  +VD A K LR                 
Sbjct: 528 --GDIVQTMASNGCEPD-IFTYGTLIGGLCRAGRVDVASKLLR----------------- 567

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
                       +VQ+  I++  H        YN + + L   KR  E  + F EM++  
Sbjct: 568 ------------SVQMKGIVLTPHA-------YNPVIQALFMRKRTKEGMRLFREMMEKS 608

Query: 356 WQPTPLNCATAITMLLDADEP-EIAIEIWNYILENGILPLEASANELLVGLRNL 408
             P  L        L +   P + AI+    +LE GILP   S   L  GL +L
Sbjct: 609 DPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLCSL 662



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 100/449 (22%), Positives = 191/449 (42%), Gaps = 44/449 (9%)

Query: 23  TTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPD 82
           TT S T+H+P  P      T L     SSS   I  +L    S         +G IP   
Sbjct: 45  TTPSSTTHHPLPPNE----TLLLQLTQSSSFDSITTLLKQLKS---------SGSIPNAT 91

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFE--QMWNAVRV 138
               ++Q S+ +     +  +         P    +N+ ++ L ++ + +  +M ++ ++
Sbjct: 92  TFATLIQ-SFTNFHEIENLLKILENELGFKPDTNFYNIALNALVEDNKLKLVEMLHS-KM 149

Query: 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           + E  VL + TF  +  + C A +   A++  + M+ HG++ D +   +L+     +E  
Sbjct: 150 VNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFI-EEGD 208

Query: 199 TSRALEFLNRVKKIVDPDGD-----SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
            + AL    ++KK +   G      S  +L+ G+ KEG VEEA +   E+ E   ++P+ 
Sbjct: 209 LNGAL----KMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEE-GFSPDQ 263

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V  + + +    R   V++AL  +  M  +   P +  +++ +  + KL +   A+++  
Sbjct: 264 V-TFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQ 322

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
             M+     P+++TYN +   L K   +         ++     P      T I  L  +
Sbjct: 323 -QMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLS 381

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIY 429
              +IA+E++  +   G  P E + + L+  L    RL +     +EM      R  ++Y
Sbjct: 382 KNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVY 441

Query: 430 EVTMHKLKKAFYNESRSMRD---IFDSLE 455
              +  L K     SR + D   IFD +E
Sbjct: 442 NTLIDGLCK-----SRRIEDAEEIFDQME 465



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 133/314 (42%), Gaps = 8/314 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVR--VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           Y +N ++  + K G FE+    ++  +++E    ++ T+ ++  + C   + + A     
Sbjct: 299 YTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTV-TYNTLISALCKENEIEAATDLAR 357

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKE 230
           ++   G+  DV   N+L+  +C  +NQ   A+E    +K K   PD  +++IL++    E
Sbjct: 358 ILVSKGLLPDVCTFNTLIQGLCLSKNQ-DIAMEMFEEMKNKGCKPDEFTYSILIDSLCYE 416

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             ++EA     EM         + + Y T +  L + +++++A +    M+      +  
Sbjct: 417 RRLKEALMLLKEM--ESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSV 474

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            ++  +D L K      A QL D  M+  G  PD  TYN +     +   + +       
Sbjct: 475 TYNTLIDGLCKNKRVEEASQLMD-QMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQT 533

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M  N  +P      T I  L  A   ++A ++   +   GI+    + N ++  L    R
Sbjct: 534 MASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKR 593

Query: 411 LSDVRRFAEEMLNR 424
             +  R   EM+ +
Sbjct: 594 TKEGMRLFREMMEK 607


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 161/369 (43%), Gaps = 19/369 (5%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G  LSP    +N ++    + G   +    +  MK++G+  +  T+ ++  +Y   G  
Sbjct: 237 QGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWI 296

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK--KIVDPDGDSFA 221
            +A    + M+  G E D+   N L + +C Q  +   A +  + ++   IV PD  ++ 
Sbjct: 297 KQATNVVEAMTAFGFEPDLWTYNVLAAGLC-QAGKVDEAFKLKDEMEHLSIVSPDVVTYN 355

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++   K     +A     EM  R +     ++ +   +  L R  Q++EAL  L++M 
Sbjct: 356 TLVDACFKYQRSSDALNLLEEM--RDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMT 413

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            E   P +  ++  +D   K  +   A  L D  MV  G   D+ T N +   L K KR 
Sbjct: 414 EEGLAPDVITYNTLIDAYCKARNVAKAFVLMD-EMVRSGLKMDTFTLNTLLYNLCKEKRY 472

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E E+      +  + P  ++  T +      ++PE A+ +W+ + +  + P   + N L
Sbjct: 473 EEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTL 532

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRIL----IYEVTMHK------LKKAFYNESRSMRDIF 451
           + GL  +G+L++      E++ + ++     Y + +H       L+KAF   ++ + + F
Sbjct: 533 IKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYF 592

Query: 452 DSLERRCKT 460
                 C T
Sbjct: 593 KPDVVTCNT 601



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 152/353 (43%), Gaps = 12/353 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +VD   K  R     N +  M++ GV S L T   +    C  G+ +EA+    +M+
Sbjct: 354 YNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMT 413

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             G+  DV+  N+L+ A C+  N  ++A   ++  V+  +  D  +   LL    KE   
Sbjct: 414 EEGLAPDVITYNTLIDAYCKARN-VAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRY 472

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           EEA +      +R  + P+ V +Y T +    +  + + AL     M      P++  ++
Sbjct: 473 EEAEELLRSPPQR-GFVPDEV-SYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYN 530

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +  L  +   T A+   + +M   G  PD  TYN+I     K   + +  +F ++M++
Sbjct: 531 TLIKGLCTIGKLTEAIDKLNELMK-KGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLE 589

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           N ++P  + C T +  L    + E AI+++    E G      + N L+  L   G +  
Sbjct: 590 NYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDT 649

Query: 414 VRRFAEEMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 462
              F  +M  R +      Y V +  L +A    S   +++   L+   K S+
Sbjct: 650 ALHFFADMEARGLQPDAFTYNVVLSALSEA--GRSEEAQNMLHKLDESGKLSE 700



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 7/141 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++    K G  E+ +     M E+     + T  ++ +  C  GK ++A+  F+  +
Sbjct: 564 YNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWA 623

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G + DV+  N+L+ A+C+  +  +    F +   + + PD  ++ ++L    + G  E
Sbjct: 624 EKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSE 683

Query: 235 EANKTF------GEMVERFEW 249
           EA          G++ ERF +
Sbjct: 684 EAQNMLHKLDESGKLSERFSY 704


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 144/324 (44%), Gaps = 8/324 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   +   +N  +  L K GR       +  M  + +L  + ++ ++   YC  G   +
Sbjct: 333 KGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMK 392

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           A + FD +    +   +V  N+LL  +CRQ E + ++ L+ +  + + + PD  ++ IL+
Sbjct: 393 AFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLK-VEMINEGIAPDIVTYTILV 451

Query: 225 EGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
            G  K G++  A + F EM+ E  E +     AY T ++  ++      A      M  +
Sbjct: 452 NGSCKMGSLSMAQEFFDEMLHEGLELDS---YAYATRIVGELKLGDTSRAFSLQEEMLAK 508

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P L  ++  +D L KL +   A +L    MV  G  PD +TY  I    ++N R+ +
Sbjct: 509 GFPPDLIIYNVVVDGLCKLGNLEEASELLQ-KMVSDGVIPDYVTYTSIIHAHLENGRLRK 567

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
             + F+EM+     P+ +     I         E A   ++ + E GILP   + N L+ 
Sbjct: 568 GREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLIN 627

Query: 404 GLRNLGRLSDVRRFAEEMLNRRIL 427
           GL  + R+     F  EM+ + I 
Sbjct: 628 GLCKVRRMDQAYNFFAEMVEKGIF 651



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 158/406 (38%), Gaps = 69/406 (16%)

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQ-MW 133
           +I  PDL   VL     SP  A+  FRWA    G R S + +  ++++L +N       W
Sbjct: 77  VIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYW 136

Query: 134 NAVRVMKED----------GVLSLPTFASIFD----SYCGAGKYDEAVMSFD-------- 171
              RV+  +          G +S      I D     Y      ++ +  FD        
Sbjct: 137 VMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLS 196

Query: 172 ---------------------------VMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
                                       M   G++  +V  N+LL + C+   +  + L+
Sbjct: 197 PDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKG-GKVQQGLD 255

Query: 205 FLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM------VERFEWNPEHVLAY 257
            L+ + ++   P+  ++ +L+ G  K+G  E+A    GEM      V  + +NP   L Y
Sbjct: 256 LLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNP---LIY 312

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
             F         + EAL     M  +   PT+  +++ +  L KL   + A+Q    M+ 
Sbjct: 313 GYF-----NKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLA 367

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
            +   PD ++YN +     +   + +    F E+      PT +   T +  L    E E
Sbjct: 368 -NNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELE 426

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
           +A ++   ++  GI P   +   L+ G   +G LS  + F +EML+
Sbjct: 427 VAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLH 472



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 146/366 (39%), Gaps = 39/366 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           RG   +   +N++++ L K G FEQ    +  M + G+ +S  T+  +   Y   G   E
Sbjct: 263 RGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAE 322

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+   + M + G    V   NS +  +C+    +    +  + +   + PD  S+  L+ 
Sbjct: 323 ALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIY 382

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ + GN+ +A   F E+  R  +    ++ Y T L  L R  +++ A +    M  E  
Sbjct: 383 GYCRLGNLMKAFLLFDEL--RSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGI 440

Query: 286 FP---------------------------------TLKFFSNALDIL--VKLNDSTHAVQ 310
            P                                  L  ++ A  I+  +KL D++ A  
Sbjct: 441 APDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFS 500

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           L + M+   G  PD + YN++ + L K   + E  +   +M+ +   P  +   + I   
Sbjct: 501 LQEEMLA-KGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAH 559

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
           L+        EI+  +L  G+ P   +   L+ G    GRL     +  EM  + IL   
Sbjct: 560 LENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNV 619

Query: 431 VTMHKL 436
           +T + L
Sbjct: 620 ITYNSL 625



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 1/123 (0%)

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           +NGR  +       M   G+  S+ T+  +   + G G+ + A + F  M   G+  +V+
Sbjct: 561 ENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVI 620

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
             NSL++ +C+          F   V+K + P+  S+ IL+      GN +EA   + +M
Sbjct: 621 TYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQM 680

Query: 244 VER 246
           ++R
Sbjct: 681 LDR 683



 Score = 38.1 bits (87), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 5/116 (4%)

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           K   V +    F +MIK+   P   NC   + +L D D    A+E++  + E GI P   
Sbjct: 176 KKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIV 235

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL-----KKAFYNESRSM 447
           + N LL      G++        EM  R     +VT + L     KK  + +++ +
Sbjct: 236 TYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGL 291


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 141/320 (44%), Gaps = 39/320 (12%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++VD L +NG  +++   +  M E G +  + T+ ++ + +C  G  DEAVM    M+
Sbjct: 360 FNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMA 419

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   + V+   +L  +C  E                              W       
Sbjct: 420 ACGCRPNTVSYTIVLKGLCSAER-----------------------------W------V 444

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A +   +M++  +  P + + + T +  L +   V++A++ L+ M    C P L  +S 
Sbjct: 445 DAEELMSQMIQ--QGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYST 502

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +D L K  ++  A++L ++ MV  G  P+++ Y+ I   L    R+++V + F  +   
Sbjct: 503 VIDGLGKAGNTDEALELLNV-MVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDT 561

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
             +   +     I+ L    E + AIE   Y++ +G +P E++   L+ GL + G + + 
Sbjct: 562 TVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEA 621

Query: 415 RRFAEEMLNRRILIYEVTMH 434
           +    E+ ++  L   +  H
Sbjct: 622 QEILTELCSKGALRKHLMKH 641



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 140/328 (42%), Gaps = 8/328 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ ++  L +NG FE++      M E G    +  +A+I D  C   + + A    + M 
Sbjct: 255 FSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMP 314

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            +G+  +VV  N+LL  +C  +              K    D  +F IL++   + G V+
Sbjct: 315 SYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVD 374

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
              +   +M+E     P+ V+ Y T +    +   +DEA+  LR M    C P    ++ 
Sbjct: 375 RVIEVLEQMLEH-GCMPD-VITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTI 432

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            L  L        A +L    M+  G  P+ +T+N +   L K   V +  +   +M+ N
Sbjct: 433 VLKGLCSAERWVDAEELMS-QMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVN 491

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
              P  ++ +T I  L  A   + A+E+ N +++ G+ P     + +   L   GR++ V
Sbjct: 492 GCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKV 551

Query: 415 RRFAEEMLNRRI----LIYEVTMHKLKK 438
            +  E + +  +    ++Y   +  L K
Sbjct: 552 IQMFENIQDTTVRSDAVLYNAVISSLCK 579



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/412 (20%), Positives = 157/412 (38%), Gaps = 47/412 (11%)

Query: 76  GIIPTPDLVHEVLQLSYDSPS--SAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G  PTP + H  L+ +  +     AV   R   GRG  L     NL++  +   G  ++ 
Sbjct: 141 GCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEA 200

Query: 133 --------------------------------WNAVRVMKEDGVLS-----LPTFASIFD 155
                                           W  V+ + E+ V +     + TF+++  
Sbjct: 201 VRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIG 260

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKI-V 213
             C  G ++        M+ HG   DV    +++  +C++E  + +R +  LNR+    +
Sbjct: 261 HLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGI--LNRMPSYGL 318

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            P+   +  LL+G       EEA     EM ++    P   + +   +  L +   VD  
Sbjct: 319 SPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDK--DCPLDDVTFNILVDFLCQNGLVDRV 376

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
           ++ L  M    C P +  ++  ++   K      AV L   M    G  P++++Y ++ +
Sbjct: 377 IEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAAC-GCRPNTVSYTIVLK 435

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L   +R  + E+   +MI+    P P+   T I  L      E AIE+   +L NG  P
Sbjct: 436 GLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 495

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
              S + ++ GL   G   +       M+ + +    +    +  A   E R
Sbjct: 496 DLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGR 547



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +++ ++D LGK G  ++    + VM + G+  +   ++SI  +  G G+ ++ +  F+ +
Sbjct: 499 SYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENI 558

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGN 232
               V  D V  N+++S++C++  +T RA+EFL   V     P+  ++ IL+ G   EG 
Sbjct: 559 QDTTVRSDAVLYNAVISSLCKR-GETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGF 617

Query: 233 VEEANKTFGEMVER 246
           V+EA +   E+  +
Sbjct: 618 VKEAQEILTELCSK 631



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 60/286 (20%), Positives = 108/286 (37%), Gaps = 13/286 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASI-FDSYCGAGKYDEAVMSFDV 172
           Y +  +V  L   GR       +  M   G    P    +  ++ C A  +  AV     
Sbjct: 112 YTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGVLRD 171

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGW--- 227
           +   G   DV   N +L A+C Q      A+  L  +      +PD  S+  +L G    
Sbjct: 172 LHGRGCALDVGNCNLVLQAVCDQ-GPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMA 230

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            + G+V++  +   EMV      P +++ + T +  L R    +   +    M    C P
Sbjct: 231 RRWGHVQDLME---EMVA--AGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAP 285

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
            ++ ++  +D + K      A  + +  M  +G  P+ + YN + + L    R  E E  
Sbjct: 286 DVRMYATIIDGVCKEERLEVARGILN-RMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGL 344

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
             EM   +     +     +  L      +  IE+   +LE+G +P
Sbjct: 345 LAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMP 390



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 77/208 (37%), Gaps = 5/208 (2%)

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           N++++  CR   Q + A      V   V P+  ++  L+      G + +A     +M  
Sbjct: 83  NAMVAGYCRA-GQLAAARRLAASVP--VAPNAYTYFPLVRALCARGRIADALAVLDDMAR 139

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
           R    P   + Y   L    R      A+  LR + G  C   +   +  L  +      
Sbjct: 140 R-GCAPTPPM-YHVTLEAACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPV 197

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
             AV+L   ++   G  PD ++YN +   L   +R   V+    EM+     P  +  +T
Sbjct: 198 DEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFST 257

Query: 366 AITMLLDADEPEIAIEIWNYILENGILP 393
            I  L      E   E+   + E+G  P
Sbjct: 258 LIGHLCRNGLFERVHEVHAQMAEHGCAP 285


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 161/369 (43%), Gaps = 43/369 (11%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +R+SP    ++ ++  L K    ++    +  M ++GV+ +  T+ SI   YC + +  E
Sbjct: 225 RRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKE 284

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     M   GVE DVV  NSL+  +C+    T     F +  K+ ++PD  ++  LL+
Sbjct: 285 AIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQ 344

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P+H + +   +    + ++VDEA+     M+    
Sbjct: 345 GYATKGALVEMHALLDLMV-RNGIHPDHHV-FNILICAYAKQEKVDEAMLVFSKMRQHGL 402

Query: 286 FPTLKFFSNALDILVK---LNDS----------------------THAVQLWD------- 313
            P +  +   + IL K   ++D+                       H++ ++D       
Sbjct: 403 NPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEE 462

Query: 314 --IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
             + M+  G   +++ +N I     K  RV E EK F  M++   +P  +  +T I    
Sbjct: 463 LILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYC 522

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RIL 427
            A + + A ++ + +   G+ P   + N L+ G   + R+ D     +EM++      I+
Sbjct: 523 LAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNII 582

Query: 428 IYEVTMHKL 436
            Y + +  L
Sbjct: 583 TYNIILQGL 591



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 143/313 (45%), Gaps = 20/313 (6%)

Query: 94  SPSSAVDFFRWAGRGQ--RLSP--YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLP 148
           SP++AV  +    R    +++P  + + +++    + GR +  + A+  V+K+   +   
Sbjct: 64  SPAAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAI 123

Query: 149 TFASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           TF  +    C   +  +A+ +    M+      DV +   LL  +C  EN++  ALE L+
Sbjct: 124 TFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLC-DENRSQEALELLH 182

Query: 208 RVK----KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            +         PD  S+  ++ G+ KEG+ ++A  T+ EM++R   +P+ V+ Y + +  
Sbjct: 183 MMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDR-RISPD-VVTYSSIIAA 240

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L +G+ +D+A++ L  M      P    +++ L           A+     M    G  P
Sbjct: 241 LCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRS-DGVEP 299

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE-- 381
           D +TYN + + L KN R  E  K F  M K   +P   + AT  T+L         +E  
Sbjct: 300 DVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEP---DIATYCTLLQGYATKGALVEMH 356

Query: 382 -IWNYILENGILP 393
            + + ++ NGI P
Sbjct: 357 ALLDLMVRNGIHP 369



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 130/319 (40%), Gaps = 13/319 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG  L+   +N ++    K GR  +      +M   GV  ++ T++++ D YC AGK DE
Sbjct: 470 RGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDE 529

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A      M   G++ D V  N+L++  CR          F   V   V P+  ++ I+L+
Sbjct: 530 ATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQ 589

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G         A + +  + +        +  Y   L  L +    DEAL+  + +    C
Sbjct: 590 GLFHTRRTAAAKELYVGITK--SGTQLELSTYNIILHGLCKNNLTDEALRMFQNL----C 643

Query: 286 FPTLKFFSNALDI----LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
              L+  +   +I    L+K+  +  A  L+ +    +G  P+  TY ++ E +I    +
Sbjct: 644 LTDLQLETRTFNIMIGALLKVGRNDEAKDLF-VAFSSNGLVPNYWTYRLMAENIIGQGLL 702

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E+++ F  M  N            +  LL   E   A    + I E     LEAS   L
Sbjct: 703 EELDQLFFSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKH-FSLEASTASL 761

Query: 402 LVGLRNLGRLSDVRRFAEE 420
            + L + G+  +  RF  E
Sbjct: 762 FIDLLSGGKYQEYHRFLPE 780



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 125/292 (42%), Gaps = 10/292 (3%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           R   L+P    +  ++ +L K+G  +        M ++G+  ++  + S+  S C   K+
Sbjct: 398 RQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKW 457

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFA 221
           D+A      M   G+  + +  NS++ + C++    ++ +  + + R+   V P+  +++
Sbjct: 458 DKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIG--VKPNVITYS 515

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++G+   G ++EA K    M       P+ V  Y T +    R  ++D+AL   + M 
Sbjct: 516 TLIDGYCLAGKMDEATKLLSSMFS-VGMKPDCV-TYNTLINGYCRVSRMDDALALFKEMV 573

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
                P +  ++  L  L     +  A +L+ + +   G   +  TYN+I   L KN   
Sbjct: 574 SSGVSPNIITYNIILQGLFHTRRTAAAKELY-VGITKSGTQLELSTYNIILHGLCKNNLT 632

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            E  + F  +   + Q         I  LL     + A +++     NG++P
Sbjct: 633 DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVP 684



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 128/303 (42%), Gaps = 13/303 (4%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDS 219
           ++A   FD +   G    +  +N  L+ + R     + A+   NR+ +     V P   +
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARH--SPAAAVSRYNRMARAGAGKVTPTVHT 89

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF-LR 278
           + IL+    + G ++      G +V++  +  E  + +   L  L   K+  +A+   LR
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVVKK-GFRVE-AITFTPLLKGLCADKRTSDAMDIVLR 147

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM--VFHGAFPDSLTYNMIFECLI 336
            M   +C P +   +  L  L   N S  A++L  +M      G+ PD ++Y  +     
Sbjct: 148 RMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFF 207

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           K     +    +HEM+     P  +  ++ I  L      + A+E+   +++NG++P   
Sbjct: 208 KEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCM 267

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSL 454
           + N +L G  +  +  +   F ++M +  +    VT + L        RS   R IFDS+
Sbjct: 268 TYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSM 327

Query: 455 ERR 457
            +R
Sbjct: 328 TKR 330


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 149/316 (47%), Gaps = 12/316 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N+++  L   G+  Q  + +R+M E G +  P    + ++ D +   G  ++A   F
Sbjct: 185 FSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLF 244

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  D+V  +S++ A+C+      +A  FL + V K V PD  ++  L+ G+  
Sbjct: 245 KEMVQRGIPPDLVTYSSVVHALCKAR-AMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSS 303

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL--RVMKGENCFP 287
            G  +EA + F EM  R    P+ V+A  T + +L +  ++ EA        MKG+N  P
Sbjct: 304 TGQWKEAVRVFKEM-RRQSILPD-VVALNTLMGSLCKYGKIKEARDVFDTMAMKGQN--P 359

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
            +  ++  L+             L+D+M+   G  PD  T+N++ +       + +    
Sbjct: 360 DVFSYTIMLNGYATKGCLVDMTDLFDLML-GDGIAPDIYTFNVLIKAYANCGMLDKAMII 418

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           F+EM  +  +P  +   T I  L    + + A+E +N +++ G++P + + + L+ G   
Sbjct: 419 FNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCT 478

Query: 408 LGRLSDVRRFAEEMLN 423
            G L   +    E++N
Sbjct: 479 HGSLLKAKELISEIMN 494



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 159/378 (42%), Gaps = 25/378 (6%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           Y     A D F   A +GQ    +++ +M++     G    M +   +M  DG+   + T
Sbjct: 339 YGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYT 398

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +  +Y   G  D+A++ F+ M  HGV+  VV   ++++A+CR         +F   +
Sbjct: 399 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMI 458

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + V PD  ++  L++G+   G++ +A +   E++                L  +  G  
Sbjct: 459 DQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNN-----------GMRLDIVFFGSI 507

Query: 270 VDEALKFLRVMKGENCF---------PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           ++   K  RVM  +N F         P    ++  +D    +     A++++D  MV  G
Sbjct: 508 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFD-AMVSAG 566

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             P+ + Y  +     K  R+ E    F EM++   +P+ +     I  L +A     A 
Sbjct: 567 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAK 626

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
             ++ + E+GI   + + + +L GL       +     +E+    + I  +T++ +    
Sbjct: 627 VKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGM 686

Query: 441 YNESR--SMRDIFDSLER 456
           +   R    +D+F S+ R
Sbjct: 687 FQTRRVEEAKDLFASISR 704



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 144/363 (39%), Gaps = 56/363 (15%)

Query: 94  SPSSAVDFF-RWAGRGQR---LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL 147
            P+ AV  F R A R Q    LSP  Y + +++D   +  R E        +   G+   
Sbjct: 88  GPALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVD 147

Query: 148 PTFAS-IFDSYCGAGKYDEAVMSFDVMSMH-----GVEQDVVAVNSLLSAICRQ--ENQT 199
              AS +   +C A + DEA+   D++ +H     G   DV + N LL ++C Q    Q 
Sbjct: 148 AIIASHLLKGFCEAKRTDEAL---DIL-LHRTPELGCVPDVFSYNILLKSLCNQGKSGQA 203

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
              L  +     +  PD  ++  +++G+ KEG+V +A   F EMV+R    P  ++ Y +
Sbjct: 204 DDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQR--GIPPDLVTYSS 261

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH 319
            +  L + + +D+A  FLR                                     MV  
Sbjct: 262 VVHALCKARAMDKAEAFLR------------------------------------QMVNK 285

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
           G  PD+ TYN +        +  E  + F EM +    P  +   T +  L    + + A
Sbjct: 286 GVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEA 345

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
            ++++ +   G  P   S   +L G    G L D+    + ML   I     T + L KA
Sbjct: 346 RDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKA 405

Query: 440 FYN 442
           + N
Sbjct: 406 YAN 408



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 20/287 (6%)

Query: 185 VNSLLSAICRQENQTS------RALEFLNRVK------KIVDPDGDSFAILLEGWEKEGN 232
           +N  L+A+ R  +  +       A+   NR        +++ P   ++AIL++   +   
Sbjct: 69  LNGFLAALARAPSSAACGSGPALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHR 128

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKF 291
            E A   FG+++ R     + ++A    L      K+ DEAL  L     E  C P +  
Sbjct: 129 PELALAFFGQLL-RTGLRVDAIIASH-LLKGFCEAKRTDEALDILLHRTPELGCVPDVFS 186

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEKFFH 349
           ++  L  L     S  A  L   MM   G    PD + YN + +   K   V++    F 
Sbjct: 187 YNILLKSLCNQGKSGQADDLLR-MMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFK 245

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM++    P  +  ++ +  L  A   + A      ++  G+LP   + N L+ G  + G
Sbjct: 246 EMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTG 305

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSL 454
           +  +  R  +EM  + IL   V ++ L  +   Y + +  RD+FD++
Sbjct: 306 QWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTM 352



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 115/287 (40%), Gaps = 7/287 (2%)

Query: 76  GIIPTPDLVHEVLQ--LSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G++P     H ++Q   ++ S   A +        G RL    +  +++ L K GR    
Sbjct: 461 GVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDA 520

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            N   +    G+      +  + D YC  GK ++A+  FD M   G+E +VV   +L++ 
Sbjct: 521 QNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNG 580

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
            C+          F   ++K + P    + I+++G  + G    A   F EM E      
Sbjct: 581 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTE--SGIA 638

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            +   Y   L  L + +  DEA+   + ++  N    +   +  +  + +      A  L
Sbjct: 639 MNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDL 698

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
           +   +   G  P ++TY+++   L+K   V E E  F  M     +P
Sbjct: 699 F-ASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEP 744


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 6/247 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           QR+SP    +N ++  L K    ++    +  M + GV+    T+ SI   +C +G+  E
Sbjct: 110 QRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKE 169

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A++    M   GVE DVV  NSL+  +C+    T     F +  K+ + PD  ++  LL+
Sbjct: 170 AIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQ 229

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    + ++V+EA+     M+ +  
Sbjct: 230 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILVCAYAKQEKVEEAMLVFSKMRQQGL 287

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    +   +D+L K      A+  ++  M+  G  PDS+ YN +   L    +  + E
Sbjct: 288 NPNAVTYGTVIDVLCKSGRVEDAMLYFE-QMIDEGLRPDSIVYNSLIHSLCIFDKWEKAE 346

Query: 346 KFFHEMI 352
           + F EM+
Sbjct: 347 ELFLEML 353



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 147/349 (42%), Gaps = 17/349 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N++++ L    R ++    + +M +DG    P   +++++ + +   G  D+     
Sbjct: 52  FSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDK----- 106

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M    +  +VV  NS+++A+C+ +    +A+E L   VK  V PD  ++  ++ G+  
Sbjct: 107 --MLDQRISPNVVTYNSIIAALCKAQT-VDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCS 163

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G  +EA     +M  R +     V+ Y + +  L +  +  EA K    M      P +
Sbjct: 164 SGQPKEAIVFLKKM--RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDI 221

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             +   L              L D +MV +G  P+   ++++     K ++V E    F 
Sbjct: 222 TTYGTLLQGYATKGALVEMHGLLD-LMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFS 280

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           +M +    P  +   T I +L  +   E A+  +  +++ G+ P     N L+  L    
Sbjct: 281 KMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFD 340

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD--IFDSLER 456
           +         EML+R I +  +  + +  +   E R +    +FD + R
Sbjct: 341 KWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVR 389



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 13/195 (6%)

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK--GENCFPTLKF 291
           E+A   F E++ R       V +Y   L  L    +  EAL+ L +M   G +C P +  
Sbjct: 34  EDARHVFDELLRR---GIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVS 90

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S  ++   K  D           M+     P+ +TYN I   L K + V +  +    M
Sbjct: 91  YSTVINGFFKEGDLDK--------MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTM 142

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +K+   P  +   + +     + +P+ AI     +  +G+ P   + N L+  L   GR 
Sbjct: 143 VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRC 202

Query: 412 SDVRRFAEEMLNRRI 426
           ++ R+  + M  R +
Sbjct: 203 TEARKIFDSMTKRGL 217



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 143/376 (38%), Gaps = 36/376 (9%)

Query: 59  ILAHASSDDIESALAC------TGIIP---TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ 109
           + A+A  + +E A+         G+ P   T   V +VL  S     + + F +    G 
Sbjct: 263 VCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGL 322

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVM 168
           R     +N ++  L    ++E+       M + G+ LS   F SI DS+C  G+  E+  
Sbjct: 323 RPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGK 382

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            FD+M   GV+ D++ +   L +  R  +           +    D             E
Sbjct: 383 LFDLMVRIGVKPDIITLGRFLGSARRDYSLFVNIYFIFTNMSNTGDK------------E 430

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           KE  V   N   G         P  +  Y   L  L + K  D+AL+  + +    C   
Sbjct: 431 KETPV---NTNGGNTASNSSGGP-FLGTYNIILHGLCKNKLTDDALRMFQNL----CLMD 482

Query: 289 LKF----FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           LK     F+  +D L+K+  +  A  L+ +    +G  P+  TY ++ E +I    + E+
Sbjct: 483 LKLEARTFNIMIDALLKVGRNDEAKDLF-VAFSSNGLVPNYWTYRLMAENIIGQGLLEEL 541

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
           ++ F  M  N            +  LL   E   A    + I E     LEAS   L + 
Sbjct: 542 DQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKH-FSLEASTASLFID 600

Query: 405 LRNLGRLSDVRRFAEE 420
           L + G+  +   F  E
Sbjct: 601 LLSGGKYQEYHIFLPE 616



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 108/269 (40%), Gaps = 56/269 (20%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD----- 218
           ++A   FD +   G+  DV + N LL+ +C  EN++  ALE L+    + D  GD     
Sbjct: 34  EDARHVFDELLRRGIP-DVFSYNILLNGLC-DENRSQEALELLH---IMADDGGDCPPDV 88

Query: 219 -SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            S++ ++ G+ KEG++++       + +R   N   V+ Y + +  L + + VD+A++ L
Sbjct: 89  VSYSTVINGFFKEGDLDKM------LDQRISPN---VVTYNSIIAALCKAQTVDKAMEVL 139

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M                                    V  G  PD +TYN I      
Sbjct: 140 TTM------------------------------------VKSGVMPDCMTYNSIVHGFCS 163

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
           + +  E   F  +M  +  +P  +   + +  L        A +I++ + + G+ P   +
Sbjct: 164 SGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITT 223

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
              LL G    G L ++    + M+   I
Sbjct: 224 YGTLLQGYATKGALVEMHGLLDLMVRNGI 252


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 157/351 (44%), Gaps = 11/351 (3%)

Query: 78  IPTPDLVHEVLQLSYDSP--SSAVD-FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           + TP  + EV+++  ++   S A+  F++   R  + +  A+N M+ +L   G++E++  
Sbjct: 156 VVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHE 215

Query: 135 AVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
               M  +G    P   T++++  ++C  G+ D A+   + M  +G+ Q    + ++L A
Sbjct: 216 LYNEMSTEG-HCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGM-QPTTKIYTMLVA 273

Query: 192 ICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +  + N    AL     ++ +   PD  ++  L+ G  K G ++EA   F EM +R    
Sbjct: 274 LFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEM-QREGCR 332

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ ++     +  L +  ++D+A+K  + M    C P++  ++  +  L +       V 
Sbjct: 333 PDTIVM-NNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVP 391

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
            W   M   G  P S TY+++ +   K  R+ +      EM +  + P P    + I  L
Sbjct: 392 SWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDAL 451

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
             A   ++A E++  + EN           ++  L   GRL D     +EM
Sbjct: 452 GKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEM 502



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           P A+  ++D LGK  R++      + +KE+ G  S   +A +      AG+ D+A+  FD
Sbjct: 441 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFD 500

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKE 230
            M+  G   DV A N+L+S + R       AL  + R+++    PD +S+ I+L G +K+
Sbjct: 501 EMNKLGCAPDVYAYNALMSGLART-GMLDEALSTMRRMQEHGCIPDINSYNIILNGLQKQ 559



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 5/168 (2%)

Query: 139 MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           MKE G+  S  T++ + D +C   + ++A+M  + M   G      A  SL+ A+ + + 
Sbjct: 397 MKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAK- 455

Query: 198 QTSRALEFLNRVKKIVDPDGDS-FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +   A E    +K+         +A++++   K G +++A   F EM  +    P+ V A
Sbjct: 456 RYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEM-NKLGCAPD-VYA 513

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           Y   +  L R   +DEAL  +R M+   C P +  ++  L+ L K  D
Sbjct: 514 YNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQKQED 561



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 3/192 (1%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           AY + +I L+   Q ++  +    M  E +CFP    +S  +    KL     A+QL + 
Sbjct: 196 AYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNE 255

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
           M   +G  P +  Y M+     K   VH     F EM     +P        I  L  A 
Sbjct: 256 MKD-NGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAG 314

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
             + A   +  +   G  P     N ++  L   GRL D  +  +EM   R +   VT +
Sbjct: 315 RIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYN 374

Query: 435 KLKKAFYNESRS 446
            + KA + ES+S
Sbjct: 375 TIIKALF-ESKS 385



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 135/324 (41%), Gaps = 45/324 (13%)

Query: 57  CEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY--DSPSSAVDFFRWAGRGQRLSP- 113
           C++    S+  + + +   G+ PT  +   ++ L +  +    A+  F    R Q   P 
Sbjct: 241 CKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEM-RHQYCRPD 299

Query: 114 -YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKYDEAVMSFD 171
            + +  ++  LGK GR ++ ++    M+ +G        +   ++ G AG+ D+A+  F 
Sbjct: 300 VFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQ 359

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKE 230
            M        VV  N+++ A+   +++ S    +  R+K+  + P   +++IL++G+ K 
Sbjct: 360 EMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKT 419

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL- 289
             +E+A     EM E+    P    AY + +  L + K+ D A +  + +K ENC  +  
Sbjct: 420 NRMEKAMMLLEEMDEK--GFPPCPAAYCSLIDALGKAKRYDLACELFQELK-ENCGSSSS 476

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIM---------------------------------- 315
           + ++  +  L K      A+ ++D M                                  
Sbjct: 477 RVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRR 536

Query: 316 MVFHGAFPDSLTYNMIFECLIKNK 339
           M  HG  PD  +YN+I   L K +
Sbjct: 537 MQEHGCIPDINSYNIILNGLQKQE 560



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 8/194 (4%)

Query: 235 EANKTFGEM---VERFEWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFP 287
           E  + +GEM   ++    NP  V+   T L  ++R     K V +A+     +K   C P
Sbjct: 134 EVVEQYGEMWKMIQEMVRNPICVVT-PTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQP 192

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
           T + +++ + +L+         +L++ M      FPD++TY+ +     K  R     + 
Sbjct: 193 TAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQL 252

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
            +EM  N  QPT       + +    ++   A+ ++  +      P   +  EL+ GL  
Sbjct: 253 LNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGK 312

Query: 408 LGRLSDVRRFAEEM 421
            GR+ +   F  EM
Sbjct: 313 AGRIDEAYHFFYEM 326


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 164/369 (44%), Gaps = 19/369 (5%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G  LSP A  +N +++   + G   +    +  MK++G++ +  T+ ++  +Y   G  
Sbjct: 236 QGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWI 295

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFA 221
            +A    + M+  G E D+   N L + +C Q  +   A +  + +++  IV PD  ++ 
Sbjct: 296 KQATDVVEAMTAFGFEPDLWTYNVLAAGLC-QAGKVDEAFKLKDEMEQLGIVSPDVVTYN 354

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++   K     +A     EM E+       ++ +   +  L R  Q++EAL  L +M 
Sbjct: 355 TLVDACFKCQRSSDALNLLEEMREK--GVKSSLVTHNIIVKGLCREGQLEEALGRLEMMT 412

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            E   P +  ++  +D   K  +   A  L D  MV  G   D+ T N +   L K KR 
Sbjct: 413 EEGLTPDVITYNTLIDASCKAGNVAKAFVLMD-EMVRSGLKMDTFTLNTLLYNLCKEKRY 471

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E E+      +  + P  ++  T +       +PE A+ +W+ +++  + P  ++ N L
Sbjct: 472 EEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTL 531

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRIL----IYEVTMHK------LKKAFYNESRSMRDIF 451
           + GL  +G+L++      E++   ++     Y + +H       L+KAF   ++ + + F
Sbjct: 532 IKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSF 591

Query: 452 DSLERRCKT 460
                 C T
Sbjct: 592 KPDVVTCNT 600



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 144/330 (43%), Gaps = 10/330 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +VD   K  R     N +  M+E GV S L T   I    C  G+ +EA+   ++M+
Sbjct: 353 YNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMT 412

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             G+  DV+  N+L+ A C+  N  ++A   ++  V+  +  D  +   LL    KE   
Sbjct: 413 EEGLTPDVITYNTLIDASCKAGN-VAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRY 471

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           EEA +      +R  + P+ V +Y T +    +  + + AL     M      P++  ++
Sbjct: 472 EEAEELLRAPPQR-GFVPDEV-SYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYN 529

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +  L  +   T A+   + +M   G  PD  TYN+I     K   + +  +F ++M++
Sbjct: 530 TLIKGLSTMGKLTEAIDKLNELMEM-GLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVE 588

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           N ++P  + C T +  L      E A++++   +E G      + N L+  L     +  
Sbjct: 589 NSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDT 648

Query: 414 VRRFAEEM----LNRRILIYEVTMHKLKKA 439
             RF  +M    L   +  Y V +  L +A
Sbjct: 649 ALRFFADMEVRGLQPDVFTYNVLLSALSEA 678



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 139/317 (43%), Gaps = 6/317 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + S    N++V  L + G+ E+    + +M E+G+   + T+ ++ D+ C AG   +
Sbjct: 379 KGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAK 438

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A +  D M   G++ D   +N+LL  +C+ E +   A E L    ++   PD  S+  ++
Sbjct: 439 AFVLMDEMVRSGLKMDTFTLNTLLYNLCK-EKRYEEAEELLRAPPQRGFVPDEVSYGTVM 497

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
             + KE   E A   + EM++R +  P  +  Y T +  L    ++ EA+  L  +    
Sbjct: 498 AAYFKEYKPEPALCLWDEMIKR-KLTPS-ISTYNTLIKGLSTMGKLTEAIDKLNELMEMG 555

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P    ++  +    K  D   A Q  +  MV +   PD +T N +   L    R+ + 
Sbjct: 556 LVPDDTTYNIIIHAYCKEGDLEKAFQFHN-KMVENSFKPDVVTCNTLMNGLCLYGRLEKA 614

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            K F   ++   +   +   T I  L   ++ + A+  +  +   G+ P   + N LL  
Sbjct: 615 MKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSA 674

Query: 405 LRNLGRLSDVRRFAEEM 421
           L   GR  + ++   ++
Sbjct: 675 LSEAGRSVEAQKMLHKL 691



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 141/336 (41%), Gaps = 19/336 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYCGAGKYDEAVMSFD 171
           + +N++   L + G+ ++ +     M++ G++S  + T+ ++ D+     +  +A+   +
Sbjct: 315 WTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLE 374

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKE 230
            M   GV+  +V  N ++  +CR E Q   AL  L  + ++ + PD  ++  L++   K 
Sbjct: 375 EMREKGVKSSLVTHNIIVKGLCR-EGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKA 433

Query: 231 GNVEEANKTFGEMV------ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           GNV +A     EMV      + F  N        T L  L + K+ +EA + LR      
Sbjct: 434 GNVAKAFVLMDEMVRSGLKMDTFTLN--------TLLYNLCKEKRYEEAEELLRAPPQRG 485

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P    +   +    K      A+ LWD  M+     P   TYN + + L    ++ E 
Sbjct: 486 FVPDEVSYGTVMAAYFKEYKPEPALCLWD-EMIKRKLTPSISTYNTLIKGLSTMGKLTEA 544

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
               +E+++    P        I       + E A +  N ++EN   P   + N L+ G
Sbjct: 545 IDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNG 604

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           L   GRL    +  E  + +   +  +T + L +A 
Sbjct: 605 LCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQAL 640



 Score = 44.7 bits (104), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 67/142 (47%), Gaps = 9/142 (6%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++    K G  E+ +     M E+     + T  ++ +  C  G+ ++A+  F+   
Sbjct: 563 YNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWV 622

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G + DV+  N+L+ A+C+ +N    AL F   ++ + + PD  ++ +LL    + G  
Sbjct: 623 EKGKKVDVITYNTLIQALCK-DNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRS 681

Query: 234 EEANKTF------GEMVERFEW 249
            EA K        G++  RF +
Sbjct: 682 VEAQKMLHKLNESGKLYGRFFY 703


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 155/375 (41%), Gaps = 28/375 (7%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGA 160
           R    G + +   +  +VD + K G      N +R M+E    + ++  +++I DS C  
Sbjct: 209 RMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD 268

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G++ +A   F  M   G+  D+   NS++   C     +         +++ + PD  ++
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+  + KEG   EA + + EM+ R      + + Y + +    +  ++D A     +M
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPR--GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH-----GAFPDSLTYNMIFECL 335
             + C P L  F+  +D          A ++ D M + H     G   D+ TYN +    
Sbjct: 387 ATKGCSPNLITFNTLID------GYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE------- 388
                ++       EMI +   P  + C T +  L D  + + A+E++  + +       
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 389 ----NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
               NG+ P   + N L+ GL N G+  +     EEM +R I+   +T   +      +S
Sbjct: 501 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 445 R--SMRDIFDSLERR 457
           R      +FDS+  +
Sbjct: 561 RLDEATQMFDSMGSK 575



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 159/370 (42%), Gaps = 19/370 (5%)

Query: 51  SSARIIC-----EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA 105
           S+AR+ C     + LA AS +  E+      +       HE+  L       A+D F   
Sbjct: 17  SAARLFCTRSIRDTLAKASGESCEAGFGGESLKLQSGF-HEIKGLE-----DAIDLFSDM 70

Query: 106 GRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
            R + L S   +  ++ V+ +  R + + +  + M+   +   + +F  +   +C   K 
Sbjct: 71  LRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKL 130

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
             A+ +F  ++  G+  DVV  N+LL  +C  E++ S AL   +++ +    P+  +F  
Sbjct: 131 PFALSTFGKLTKLGLHPDVVTFNTLLHGLC-VEDRVSEALNLFHQMFETTCRPNVVTFTT 189

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G  +EG + EA      M+E     P  +  Y T +  + +      AL  LR M+ 
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMED-GLQPTQI-TYGTIVDGMCKKGDTVSALNLLRKMEE 247

Query: 283 -ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
             +  P +  +S  +D L K    + A  L+  M    G FPD  TYN +      + R 
Sbjct: 248 VSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQE-KGIFPDLFTYNSMIVGFCSSGRW 306

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            + E+   EM++ +  P  +     I   +   +   A E+++ +L  GI+P   + + +
Sbjct: 307 SDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366

Query: 402 LVGLRNLGRL 411
           + G     RL
Sbjct: 367 IDGFCKQNRL 376



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/357 (19%), Positives = 156/357 (43%), Gaps = 19/357 (5%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +++SP    +N +++   K G+F +       M   G++ +  T++S+ D +C   + D 
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A   F +M+  G   +++  N+L+   C  + +    +E L+ + +  +  D  ++  L+
Sbjct: 379 AEHMFYLMATKGCSPNLITFNTLIDGYCGAK-RIDDGMELLHEMTETGLVADTTTYNTLI 437

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE- 283
            G+   G++  A     EM+      P+ ++  +T L  L    ++ +AL+  +VM+   
Sbjct: 438 HGFYLVGDLNAALDLLQEMISS-GLCPD-IVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 284 ----------NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
                        P ++ ++  +  L+       A +L++  M   G  PD++TY+ + +
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE-EMPHRGIVPDTITYSSMID 554

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L K  R+ E  + F  M    + P  +   T I     A   +  +E++  +   GI+ 
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVA 614

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 450
              +   L+ G R +G ++      +EM++  +    +T+  +    +++    R +
Sbjct: 615 NAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAV 671


>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
 gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 137/330 (41%), Gaps = 43/330 (13%)

Query: 98  AVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A+ FF W  +  G +   Y +  MV +LG+  +F  +   +  M  DG   ++ T+  + 
Sbjct: 321 ALGFFHWLKQLPGFKHDGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLI 380

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-V 213
            SY  A   ++AV  F+ M   G E D V   +L+  I  +    + A+E   R++   +
Sbjct: 381 HSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLID-IHAKAGFLNFAMEMYQRMQAAGL 439

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  ++++++    K G++  A+K F EM+E                            
Sbjct: 440 SPDTFTYSVMINCLGKAGHLAAADKLFCEMIE---------------------------- 471

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
                    + C P L  ++  + +  K  +  +A++L+  M    G  PD +TY+++ E
Sbjct: 472 ---------QGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQ-NAGFEPDKVTYSIVME 521

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L  +  + E E  F EM +  W P        + +   A   E A E +  +L  G+ P
Sbjct: 522 VLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCP 581

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLN 423
              + N LL     + RL D     + MLN
Sbjct: 582 NVPTCNSLLSAFLRVNRLPDAYNLLQSMLN 611



 Score = 42.0 bits (97), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 39/203 (19%), Positives = 85/203 (41%), Gaps = 3/203 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++ + +    AG    A   F  M   G   ++V  N +++   +  N  +    + + 
Sbjct: 445 TYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDM 504

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
                +PD  +++I++E     G ++EA   F EM +R  W P+  + Y   +    +  
Sbjct: 505 QNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEM-KRKNWVPDEPV-YGLLVDLWGKAG 562

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            V++A ++ + M      P +   ++ L   +++N    A  L   M+   G  P   TY
Sbjct: 563 NVEKAWEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQSMLNL-GLNPSLQTY 621

Query: 329 NMIFECLIKNKRVHEVEKFFHEM 351
            ++  C  + +  +++  +   M
Sbjct: 622 TLLLSCCTEARSPYDMGCYCELM 644


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 141/312 (45%), Gaps = 9/312 (2%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A+D F +  + + +SP  + +N ++  L    ++++    +  M+   ++  + TF  + 
Sbjct: 257 ALDIFSYM-KVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLV 315

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC-RQENQTSRALEFLNRVKKIV 213
           D+ C  GK  EA      M+  GVE DVV  +SL+     R E   +R L F   + K  
Sbjct: 316 DTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKL-FDAMITKGC 374

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  S+ IL+ G+ K   ++EA + F EM+ +    P +V +Y T +  L +   + EA
Sbjct: 375 KPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQ-GLTPNNV-SYNTLIHGLCQLGSLREA 432

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
               + M      P L  +S  LD   K      A +L+  M   +   P+ + YN++ +
Sbjct: 433 RNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSK-PNLVMYNILID 491

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            + K+  + +  K F E+     QP      T I  L      + A+E +  + E+G  P
Sbjct: 492 AMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPP 551

Query: 394 LEASANELLVGL 405
            E S N ++ G 
Sbjct: 552 DEISYNVIIRGF 563



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 151/351 (43%), Gaps = 14/351 (3%)

Query: 77  IIPTPDLVHEVLQLS--YDSPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQM 132
           II    L+  ++++   YD+  S       AG    LSP  Y  +++++      R +  
Sbjct: 97  IIQFTKLLSAIVKMGQYYDTVISLTKQMELAG----LSPNIYTLSILINCFSHLQRVDLA 152

Query: 133 WNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           ++ + +++K     ++ TF ++ +  C  GK+ +A+  FD M   G   DV    ++++ 
Sbjct: 153 FSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIING 212

Query: 192 ICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +C+   +T+ A   L ++++    P+  +++ +++   K+  V EA   F  M  + +  
Sbjct: 213 LCKI-GETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYM--KVKGI 269

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
              +  Y + +  L    Q  EA   L  M+  N  P +  F+  +D + K    + A  
Sbjct: 270 SPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQG 329

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           +   M    G  PD +TY+ +         V E  K F  MI    +P   +    I   
Sbjct: 330 VLKTMTEM-GVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGY 388

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
                 + A +++N ++  G+ P   S N L+ GL  LG L + R   + M
Sbjct: 389 CKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNM 439



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 144/355 (40%), Gaps = 47/355 (13%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
            RG R   Y +  +++ L K G        ++ M+E G   ++ T+++I DS+    + +
Sbjct: 196 ARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVN 255

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAIL 223
           EA+  F  M + G+  D+   NSL+  +C   +Q   A   LN ++ + + PD  +F +L
Sbjct: 256 EALDIFSYMKVKGISPDIFTYNSLIQGLC-NFSQWKEASALLNEMRSLNIMPDIVTFNVL 314

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++   KEG V EA      M E     P+ V+ Y + +       +V EA K        
Sbjct: 315 VDTICKEGKVSEAQGVLKTMTE-MGVEPD-VVTYSSLMYGYSLRSEVVEARK-------- 364

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
                                      L+D M+   G  PD  +YN++     K KR+ E
Sbjct: 365 ---------------------------LFDAMIT-KGCKPDVFSYNILINGYCKVKRIDE 396

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
            ++ F+EMI     P  ++  T I  L        A  ++  +  NG LP   + + LL 
Sbjct: 397 AKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLD 456

Query: 404 GLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
           G    G      R    M +      +++Y + +  + K+     R  R +F  L
Sbjct: 457 GFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKS--GNLRDARKLFSEL 509



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/272 (20%), Positives = 103/272 (37%), Gaps = 37/272 (13%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N++VD + K G+  +    ++ M E GV   + T++S+   Y    +  EA   FD M
Sbjct: 310 TFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAM 369

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G + DV + N L++  C+ +        F   + + + P+  S+  L+ G  + G++
Sbjct: 370 ITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSL 429

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA   F  M      N  ++  Y   L    +     +A +  R M+     P L  ++
Sbjct: 430 REARNLFKNM--HTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYN 487

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFH---------------------------------- 319
             +D + K  +   A +L+  + V                                    
Sbjct: 488 ILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEED 547

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           G  PD ++YN+I    + +K      +   EM
Sbjct: 548 GCPPDEISYNVIIRGFLHHKDESRAVQLIGEM 579



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 83  LVHEVLQLSYDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           L+H + QL   S   A + F+     G   + + +++++D   K G F + +   R M+ 
Sbjct: 419 LIHGLCQLG--SLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQS 476

Query: 142 D-GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
                +L  +  + D+ C +G   +A   F  + + G++ +     ++++ +C+ E    
Sbjct: 477 TYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCK-EGLLD 535

Query: 201 RALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
            ALE F N  +    PD  S+ +++ G+    +   A +  GEM ++
Sbjct: 536 EALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDK 582


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 155/349 (44%), Gaps = 65/349 (18%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D L K G  ++       M E+G+ L + ++ S+   +C  G++  AV   D M 
Sbjct: 213 YNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMV 272

Query: 175 MHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEK 229
           + G V  DV   N L+  +C+      R  E  N V  ++     PD  S+  L+ G+  
Sbjct: 273 VRGKVYPDVYTFNILIDGLCK----LGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCL 328

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G+V EA + F +MVER      +V++Y T +    + + VDEA+  L  M  +N  P  
Sbjct: 329 SGSVGEAKQVFDKMVERTAL--PNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDT 386

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
             ++  LD    L+ S  ++  WD++  M   G   D +TYN++ +   K+      EKF
Sbjct: 387 VTYNCLLD---GLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKH------EKF 437

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
                                        + A+ ++ +I+E GI P   + N LL GL  
Sbjct: 438 -----------------------------DKALALFQHIIEIGISPNIRTYNILLDGLCK 468

Query: 408 LGRLSDVRRFAEEMLNR--------RILIYEVTMHKL-KKAFYNESRSM 447
            GRL    ++A+E+            I  Y + +H L K+ F +E+ ++
Sbjct: 469 SGRL----KYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEAL 513



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 137/339 (40%), Gaps = 50/339 (14%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-----LPTFASIFDSYCGAGK 162
           G  L  Y++N M+      GRF+    AV+++ E  V       + TF  + D  C  G+
Sbjct: 240 GIELDVYSYNSMIHGFCSVGRFQA---AVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGR 296

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
             EA     VM   G + D+V+ N+L++  C                             
Sbjct: 297 VSEAYNVVAVMIKRGWKPDIVSYNALMNGYCL---------------------------- 328

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
                   G+V EA + F +MVER      +V++Y T +    + + VDEA+  L  M  
Sbjct: 329 -------SGSVGEAKQVFDKMVERTAL--PNVISYCTLINGYCKVRMVDEAMVLLTEMHN 379

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKR 340
           +N  P    ++  LD    L+ S  ++  WD++  M   G   D +TYN++ +   K+++
Sbjct: 380 KNLVPDTVTYNCLLD---GLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEK 436

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
             +    F  +I+    P        +  L  +   + A EI+  +   G  P   + N 
Sbjct: 437 FDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNI 496

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
           ++ GL   G L +      +M+N   L   +T   + +A
Sbjct: 497 MIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDTIVRA 535



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 131/293 (44%), Gaps = 14/293 (4%)

Query: 123 LGKNG-RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           LG+ G  F  + N   ++K    + +    ++    C  G+  EAV         G   D
Sbjct: 118 LGQMGFAFSLLGN---ILKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFD 174

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTF 240
            V   ++++ +C+   +T  A++   ++KKI V P+   +  +++G  K+G V+EA    
Sbjct: 175 EVCYGTIINGLCKI-GKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLC 233

Query: 241 GEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFL--RVMKGENCFPTLKFFSNALD 297
            EMVE   E +   V +Y + +       +   A+K L   V++G+  +P +  F+  +D
Sbjct: 234 TEMVENGIELD---VYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGK-VYPDVYTFNILID 289

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
            L KL   + A  +  +M +  G  PD ++YN +      +  V E ++ F +M++    
Sbjct: 290 GLCKLGRVSEAYNVVAVM-IKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTAL 348

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           P  ++  T I         + A+ +   +    ++P   + N LL GL   GR
Sbjct: 349 PNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGR 401


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 155/375 (41%), Gaps = 28/375 (7%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGA 160
           R    G + +   +  +VD + K G      N +R M+E    + ++  +++I DS C  
Sbjct: 209 RMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD 268

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G++ +A   F  M   G+  D+   NS++   C     +         +++ + PD  ++
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+  + KEG   EA + + EM+ R      + + Y + +    +  ++D A     +M
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPR--GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH-----GAFPDSLTYNMIFECL 335
             + C P L  F+  +D          A ++ D M + H     G   D+ TYN +    
Sbjct: 387 ATKGCSPNLITFNTLID------GYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE------- 388
                ++       EMI +   P  + C T +  L D  + + A+E++  + +       
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 389 ----NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
               NG+ P   + N L+ GL N G+  +     EEM +R I+   +T   +      +S
Sbjct: 501 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 445 R--SMRDIFDSLERR 457
           R      +FDS+  +
Sbjct: 561 RLDEATQMFDSMGSK 575



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 159/370 (42%), Gaps = 19/370 (5%)

Query: 51  SSARIIC-----EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA 105
           S+AR+ C     + LA AS +  E+      +       HE+  L       A+D F   
Sbjct: 17  SAARLFCTRSIRDTLAKASGESCEAGFGGESLKLQSGF-HEIKGLE-----DAIDLFSDM 70

Query: 106 GRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
            R + L S   +  ++ V+ +  R + + +  + M+   +   + +F  +   +C   K 
Sbjct: 71  LRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKL 130

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
             A+ +F  ++  G+  DVV  N+LL  +C  E++ S AL   +++ +    P+  +F  
Sbjct: 131 PFALSTFGKITKLGLHPDVVTFNTLLHGLC-VEDRVSEALNLFHQMFETTCRPNVVTFTT 189

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G  +EG + EA      M+E     P  +  Y T +  + +      AL  LR M+ 
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMED-GLQPTQI-TYGTIVDGMCKKGDTVSALNLLRKMEE 247

Query: 283 -ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
             +  P +  +S  +D L K    + A  L+  M    G FPD  TYN +      + R 
Sbjct: 248 VSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQE-KGIFPDLFTYNSMIVGFCSSGRW 306

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            + E+   EM++ +  P  +     I   +   +   A E+++ +L  GI+P   + + +
Sbjct: 307 SDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366

Query: 402 LVGLRNLGRL 411
           + G     RL
Sbjct: 367 IDGFCKQNRL 376



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/357 (19%), Positives = 156/357 (43%), Gaps = 19/357 (5%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +++SP    +N +++   K G+F +       M   G++ +  T++S+ D +C   + D 
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A   F +M+  G   +++  N+L+   C  + +    +E L+ + +  +  D  ++  L+
Sbjct: 379 AEHMFYLMATKGCSPNLITFNTLIDGYCGAK-RIDDGMELLHEMTETGLVADTTTYNTLI 437

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE- 283
            G+   G++  A     EM+      P+ ++  +T L  L    ++ +AL+  +VM+   
Sbjct: 438 HGFYLVGDLNAALDLLQEMISS-GLCPD-IVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 284 ----------NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
                        P ++ ++  +  L+       A +L++  M   G  PD++TY+ + +
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE-EMPHRGIVPDTITYSSMID 554

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L K  R+ E  + F  M    + P  +   T I     A   +  +E++  +   GI+ 
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVA 614

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 450
              +   L+ G R +G ++      +EM++  +    +T+  +    +++    R +
Sbjct: 615 NAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAV 671


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 155/375 (41%), Gaps = 28/375 (7%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGA 160
           R    G + +   +  +VD + K G      N +R M+E    + ++  +++I DS C  
Sbjct: 209 RMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD 268

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G++ +A   F  M   G+  D+   NS++   C     +         +++ + PD  ++
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+  + KEG   EA + + EM+ R      + + Y + +    +  ++D A     +M
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPR--GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH-----GAFPDSLTYNMIFECL 335
             + C P L  F+  +D          A ++ D M + H     G   D+ TYN +    
Sbjct: 387 ATKGCSPNLITFNTLID------GYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE------- 388
                ++       EMI +   P  + C T +  L D  + + A+E++  + +       
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 389 ----NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
               NG+ P   + N L+ GL N G+  +     EEM +R I+   +T   +      +S
Sbjct: 501 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 445 R--SMRDIFDSLERR 457
           R      +FDS+  +
Sbjct: 561 RLDEATQMFDSMGSK 575



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/357 (19%), Positives = 156/357 (43%), Gaps = 19/357 (5%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +++SP    +N +++   K G+F +       M   G++ +  T++S+ D +C   + D 
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A   F +M+  G   +++  N+L+   C  + +    +E L+ + +  +  D  ++  L+
Sbjct: 379 AEHMFYLMATKGCSPNLITFNTLIDGYCGAK-RIDDGMELLHEMTETGLVADTTTYNTLI 437

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE- 283
            G+   G++  A     EM+      P+ ++  +T L  L    ++ +AL+  +VM+   
Sbjct: 438 HGFYLVGDLNAALDLLQEMISS-GLCPD-IVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 284 ----------NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
                        P ++ ++  +  L+       A +L++  M   G  PD++TY+ + +
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE-EMPHRGIVPDTITYSSMID 554

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L K  R+ E  + F  M    + P  +   T I     A   +  +E++  +   GI+ 
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVA 614

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 450
              +   L+ G R +G ++      +EM++  +    +T+  +    +++    R +
Sbjct: 615 NAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAV 671



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 158/370 (42%), Gaps = 19/370 (5%)

Query: 51  SSARIIC-----EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA 105
           S+AR+ C     + LA AS +  E+      +       HE+  L       A+D F   
Sbjct: 17  SAARLFCTRSIRDTLAKASGESCEAGFGGESLKLQSGF-HEIKGLE-----DAIDLFSDM 70

Query: 106 GRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
            R + L S   +  ++ V+ +  R + + +  + M+   +   + +F  +   +C   K 
Sbjct: 71  LRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKL 130

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
             A+ +F  ++  G+  DVV   +LL  +C  E++ S AL   +++ +    P+  +F  
Sbjct: 131 PFALSTFGKITKLGLHPDVVTFTTLLHGLC-VEDRVSEALNLFHQMFETTCRPNVVTFTT 189

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G  +EG + EA      M+E     P  +  Y T +  + +      AL  LR M+ 
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMED-GLQPTQI-TYGTIVDGMCKKGDTVSALNLLRKMEE 247

Query: 283 -ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
             +  P +  +S  +D L K    + A  L+  M    G FPD  TYN +      + R 
Sbjct: 248 VSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQE-KGIFPDLFTYNSMIVGFCSSGRW 306

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            + E+   EM++ +  P  +     I   +   +   A E+++ +L  GI+P   + + +
Sbjct: 307 SDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366

Query: 402 LVGLRNLGRL 411
           + G     RL
Sbjct: 367 IDGFCKQNRL 376


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 146/331 (44%), Gaps = 6/331 (1%)

Query: 93  DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151
           D   + V F R    G   + Y + +M++   K G  +  +   + MK  GVL +L T+ 
Sbjct: 157 DIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYN 216

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
           S+   YC  GK   A   FD +S  GV  + V  N L+  +CR+  Q S+A   L R+K+
Sbjct: 217 SLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRK-GQVSKAEGLLERMKR 275

Query: 212 I-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
             ++P   +F +L++G    G +++A  ++ E ++     P  V  Y   +    +    
Sbjct: 276 AHINPTTRTFNMLMDGLCNTGQLDKA-LSYLEKLKLIGLCPTLV-TYNILISGFSKVGNS 333

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
               + +R M+     P+   ++  ++  V+ +D   A +++ +M    G  PD  TY +
Sbjct: 334 SVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRI-GLVPDQHTYGV 392

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +   L     + E  K +  M++   QP  +   T I           A++    +++NG
Sbjct: 393 LIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNG 452

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           + P  AS    +  L   G+  + +R  +EM
Sbjct: 453 VTPNVASYISTIQILCKDGKSIEAKRLLKEM 483



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/335 (19%), Positives = 131/335 (39%), Gaps = 40/335 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +G   S +++N  +D+L K+G  ++ W                    F  Y G  ++D  
Sbjct: 67  KGHSPSSFSFNNALDLLAKSGNLDRTW------------------GFFTEYLGRTQFD-- 106

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
           V SF +                + A C   N  S+  E L +++ + V P+   + IL+E
Sbjct: 107 VYSFGIT---------------IKAFCENGN-VSKGFELLAQMETMGVSPNVFIYTILIE 150

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              + G++++A   F  M +      +++  Y   +    +     +  +  + MK    
Sbjct: 151 ACCRNGDIDQAKVMFSRMDDLGLAANQYI--YTIMINGFFKKGYKKDGFELYQKMKLVGV 208

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P L  +++ +    +    + A +++D  +   G   +++TYN++   L +  +V + E
Sbjct: 209 LPNLYTYNSLITEYCRDGKLSLAFKVFD-EISKRGVACNAVTYNILIGGLCRKGQVSKAE 267

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
                M +    PT       +  L +  + + A+     +   G+ P   + N L+ G 
Sbjct: 268 GLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGF 327

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
             +G  S V     EM +R I   +VT   L   F
Sbjct: 328 SKVGNSSVVSELVREMEDRGISPSKVTYTILMNTF 362



 Score = 42.7 bits (99), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   S   + ++++   ++   E+ +    +MK  G++    T+  +    C  G   E
Sbjct: 346 RGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVE 405

Query: 166 AVMSFDVM-SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAIL 223
           A   +  M  MH    DV+  N++++  C++ N + +AL+FL   VK  V P+  S+   
Sbjct: 406 ASKLYKSMVEMHLQPNDVI-YNTMINGYCKECN-SYKALKFLEEMVKNGVTPNVASYIST 463

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           ++   K+G   EA +   EM E     PE + +
Sbjct: 464 IQILCKDGKSIEAKRLLKEMTEAGLKPPESLCS 496


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 155/375 (41%), Gaps = 28/375 (7%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGA 160
           R    G + +   +  +VD + K G      N +R M+E    + ++  +++I DS C  
Sbjct: 209 RMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD 268

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G++ +A   F  M   G+  D+   NS++   C     +         +++ + PD  ++
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+  + KEG   EA + + EM+ R      + + Y + +    +  ++D A     +M
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPR--GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH-----GAFPDSLTYNMIFECL 335
             + C P L  F+  +D          A ++ D M + H     G   D+ TYN +    
Sbjct: 387 ATKGCSPNLITFNTLID------GYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE------- 388
                ++       EMI +   P  + C T +  L D  + + A+E++  + +       
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 389 ----NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
               NG+ P   + N L+ GL N G+  +     EEM +R I+   +T   +      +S
Sbjct: 501 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 445 R--SMRDIFDSLERR 457
           R      +FDS+  +
Sbjct: 561 RLDEATQMFDSMGSK 575



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 160/370 (43%), Gaps = 19/370 (5%)

Query: 51  SSARIIC-----EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA 105
           S+AR+ C     + LA AS +  E+      +       HE+  L       A+D F   
Sbjct: 17  SAARLFCTRSIRDTLAKASGESCEAGFGGESLKLQSGF-HEIKGLE-----DAIDLFSDM 70

Query: 106 GRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
            R + L S   +  ++ V+ +  R + + +  + M+   +   + +F  +   +C   K 
Sbjct: 71  LRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKL 130

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
             A+ +F  ++  G+  DVV   +LL  +C  E++ S AL+F +++ +    P+  +F  
Sbjct: 131 PFALSTFGKITKLGLHPDVVTFTTLLHGLC-VEDRVSEALDFFHQMFETTCRPNVVTFTT 189

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G  +EG + EA      M+E     P  +  Y T +  + +      AL  LR M+ 
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMED-GLQPTQI-TYGTIVDGMCKKGDTVSALNLLRKMEE 247

Query: 283 -ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
             +  P +  +S  +D L K    + A  L+  M    G FPD  TYN +      + R 
Sbjct: 248 VSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQE-KGIFPDLFTYNSMIVGFCSSGRW 306

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            + E+   EM++ +  P  +     I   +   +   A E+++ +L  GI+P   + + +
Sbjct: 307 SDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366

Query: 402 LVGLRNLGRL 411
           + G     RL
Sbjct: 367 IDGFCKQNRL 376



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/357 (19%), Positives = 156/357 (43%), Gaps = 19/357 (5%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +++SP    +N +++   K G+F +       M   G++ +  T++S+ D +C   + D 
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A   F +M+  G   +++  N+L+   C  + +    +E L+ + +  +  D  ++  L+
Sbjct: 379 AEHMFYLMATKGCSPNLITFNTLIDGYCGAK-RIDDGMELLHEMTETGLVADTTTYNTLI 437

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE- 283
            G+   G++  A     EM+      P+ ++  +T L  L    ++ +AL+  +VM+   
Sbjct: 438 HGFYLVGDLNAALDLLQEMISS-GLCPD-IVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 284 ----------NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
                        P ++ ++  +  L+       A +L++  M   G  PD++TY+ + +
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE-EMPHRGIVPDTITYSSMID 554

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L K  R+ E  + F  M    + P  +   T I     A   +  +E++  +   GI+ 
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVA 614

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 450
              +   L+ G R +G ++      +EM++  +    +T+  +    +++    R +
Sbjct: 615 NAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAV 671


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 131/296 (44%), Gaps = 15/296 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWN----AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           ++ +++ L K+GR     +    A  + +  GV+   TF S+ D YC  GK D+A    D
Sbjct: 549 FSSVINSLCKDGRVMDAHDIFDLATDIGERPGVI---TFNSLIDGYCLVGKMDKAFKILD 605

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M + GVE D+V  N+LL    +          F    +K V P+  ++ I+L G  + G
Sbjct: 606 AMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAG 665

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
               A K F EM+E        V  Y   L  L R    DEA+   + +   N   ++  
Sbjct: 666 RTVAARKKFHEMIE--SGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITI 723

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
            +  ++ + K+     A +L+  +    G  P+  TY ++   L+K+  V +    F  M
Sbjct: 724 LNTMINAMYKVQRKEEAKELFATISA-SGLLPNESTYGVMIINLLKDGGVEDANNMFSSM 782

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI--LENGILPLEASANELLVGL 405
            K+   P        I MLL  ++ EIA +  NY+  ++   + LEAS   L++ L
Sbjct: 783 EKSGIVPGSRLLNRIIRMLL--EKGEIA-KAGNYLSKVDGKRILLEASTTSLMLSL 835



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/315 (20%), Positives = 133/315 (42%), Gaps = 6/315 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFD 171
           ++++++  L  N   ++  + +++M + G    P    ++++   +   G+  +A   F 
Sbjct: 230 SYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFH 289

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M+  GV+ DVV  N ++ A+C+        L           PD  +++ ++ G+   G
Sbjct: 290 EMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLG 349

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++EA K F EM +R    P +++   +FL +L +  +  EA +F   M  +   P +  
Sbjct: 350 RLKEAAKMFREMKKR-GLIP-NIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFS 407

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +   L            + L++ M   +G   +   + ++     K   V +    F EM
Sbjct: 408 YCTLLHGYASEGCFADMIGLFNSMKS-NGIAANCHVFTILIHAYAKRGMVDDAMLIFTEM 466

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
            +    P  +  +T I+          A+E +N ++  GI P  A  + ++ G    G L
Sbjct: 467 QQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGL 526

Query: 412 SDVRRFAEEMLNRRI 426
              +    EM+N+ I
Sbjct: 527 VKAKELVSEMINKGI 541



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 139/330 (42%), Gaps = 19/330 (5%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F     +G +     +NL++D L K    ++    +R M  DG      T++ +   Y  
Sbjct: 288 FHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYAT 347

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G+  EA   F  M   G+  ++V  NS L+++C+       A  F +   K   PD  S
Sbjct: 348 LGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFS 407

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI------RGKQVDEA 273
           +  LL G+  EG        F +M+  F     + +A    + T++      RG  VD+A
Sbjct: 408 YCTLLHGYASEG-------CFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRG-MVDDA 459

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
           +     M+ +   P +  +S  +    ++   T A++ ++  MV  G  P++  Y+ I +
Sbjct: 460 MLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFN-QMVARGIQPNTAVYSSIIQ 518

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTP--LNCATAITMLLDADEPEIAIEIWNYILENGI 391
               +  + + ++   EMI N+  P P  +  ++ I  L        A +I++   + G 
Sbjct: 519 GFCMHGGLVKAKELVSEMI-NKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGE 577

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            P   + N L+ G   +G++    +  + M
Sbjct: 578 RPGVITFNSLIDGYCLVGKMDKAFKILDAM 607



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 121/285 (42%), Gaps = 9/285 (3%)

Query: 137 RVMKEDG--VLSLPTFAS---IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           RV +E+    +++PTF +   + D  C A + D  +  F  +   G++ D +  N+LL  
Sbjct: 142 RVCREEAGTQVAVPTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKC 201

Query: 192 ICRQENQTSRALE-FLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
           +C   N+T  A+   L+R+ ++   P+  S++I+L+        + A      M ++   
Sbjct: 202 LC-YANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGA 260

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
               V+AY T +       +  +A      M  +   P +  ++  +D L K      A 
Sbjct: 261 CSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKA- 319

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           +L    M   GA PD++TY+ +        R+ E  K F EM K    P  + C + +  
Sbjct: 320 ELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLAS 379

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
           L      + A E ++ +   G  P   S   LL G  + G  +D+
Sbjct: 380 LCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADM 424



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 118/308 (38%), Gaps = 19/308 (6%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS-------RALEFLNRV------K 210
           D+A   FD +          ++N  L+A+ R  + ++        AL   NRV       
Sbjct: 91  DDAHHMFDELFRQATPVPGRSLNGFLAALARATSSSACITDGPALALALFNRVCREEAGT 150

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
           ++  P   ++ IL++   +    +     FG ++ R     + + A  T L  L    + 
Sbjct: 151 QVAVPTFCTYNILMDCCCRARRPDLGLALFGCIL-RTGLKMDQITA-NTLLKCLCYANRT 208

Query: 271 DEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-PDSLTY 328
           +EA+   L  M    C P    +S  L  L   + S  A+ L  +M    GA  PD + Y
Sbjct: 209 EEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAY 268

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           + +           +    FHEM +   +P  +     I  L  A   + A  +   +  
Sbjct: 269 STVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTT 328

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 448
           +G  P   + + ++ G   LGRL +  +   EM  R ++   VT +    +     RS  
Sbjct: 329 DGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKE 388

Query: 449 --DIFDSL 454
             + FDS+
Sbjct: 389 AAEFFDSM 396


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 147/341 (43%), Gaps = 13/341 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++   K GR E+ ++    MK  GV++ + TF++  D++C  G   EA+  F  M 
Sbjct: 273 YNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMR 332

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           + G+  +     SL+   C+        +     V + + P+  ++ ++++G  KEG V 
Sbjct: 333 VRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVA 392

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLK 290
           EA+     ++ER       V A E    TLI G       + AL  L  MK +     + 
Sbjct: 393 EADNVL-SLMER-----GGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVS 446

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +   +  L K      A  L    M   G  P+++ Y  I + L K  +  E     H+
Sbjct: 447 LYGTLIWGLCKDQKVDEAKSLLH-KMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHK 505

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           ++ + +QP  +     I  L  A     AI  +N + E G+ P   +   L+ G   +G 
Sbjct: 506 ILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGS 565

Query: 411 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIF 451
           L+       EM+++ + + +V    L   +  ++ +++D F
Sbjct: 566 LNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQA-NLQDAF 605



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 131/314 (41%), Gaps = 16/314 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++  VD   K G  ++       M+  G++    T+ S+ D  C AG+ D+A++  D M 
Sbjct: 308 FSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMV 367

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNV 233
             G+  +VV    ++  +C+ E + + A   L+ +++  V  +   +  L+ G     N 
Sbjct: 368 HQGLVPNVVTYTVMVDGLCK-EGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNS 426

Query: 234 EEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           E A     +M  +  E +   V  Y T +  L + ++VDEA   L  M G    P    +
Sbjct: 427 ERALDLLNQMKNKGMELD---VSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIY 483

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +D L K    + AV L    ++  G  P+ +TY  + + L K   + E    F++M 
Sbjct: 484 TTIMDALFKAGKESEAVALLH-KILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMR 542

Query: 353 KNEWQPTPLNCATAITMLLDA----DEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
           +    P       A T L+D          A+ + N +++ G+   +     L+ G    
Sbjct: 543 ELGLDPN----VQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQ 598

Query: 409 GRLSDVRRFAEEML 422
             L D      +M+
Sbjct: 599 ANLQDAFALKTKMI 612



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 123/298 (41%), Gaps = 13/298 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI--CRQENQTSRALEFL 206
           TF  + D  C  G+  EA   F  M   G   DVV  NSL+     C    +  + +  +
Sbjct: 202 TFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEM 261

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
              K     D  ++  L+  + K G +E+A   FGEM  + +    +V+ + TF+    +
Sbjct: 262 R--KSGCAADVVTYNALINCFSKFGRMEKAYSYFGEM--KRQGVVANVVTFSTFVDAFCK 317

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
              V EA+K    M+     P    +++ +D   K      A+ L D  MV  G  P+ +
Sbjct: 318 EGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLD-EMVHQGLVPNVV 376

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           TY ++ + L K  +V E +     M +   +   L   T I      +  E A+++ N +
Sbjct: 377 TYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQM 436

Query: 387 LENGILPLEASANELLV-GLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKA 439
              G + L+ S    L+ GL    ++ + +    +M    L    +IY   M  L KA
Sbjct: 437 KNKG-MELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKA 493



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 10/223 (4%)

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKT 239
           +V   N ++  +C+ E +   A     R+K +   PD  ++  L++G+ K G++EE  + 
Sbjct: 199 NVFTFNIVIDFLCK-EGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQL 257

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
             EM  R       V+ Y   +    +  ++++A  +   MK +     +  FS  +D  
Sbjct: 258 VSEM--RKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAF 315

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            K      A++L+  M V  G  P+  TY  + +   K  R+ +      EM+     P 
Sbjct: 316 CKEGLVQEAMKLFAQMRV-RGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPN 374

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
            +     +  L    +   A  + + +   G+      ANELL
Sbjct: 375 VVTYTVMVDGLCKEGKVAEADNVLSLMERGGV-----KANELL 412


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 90/398 (22%), Positives = 168/398 (42%), Gaps = 51/398 (12%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR-----GQRLSPYAWNLMVD 121
           ++   +A  GI+P+    + VL L++      V+   W  R     G + + Y++ + + 
Sbjct: 203 EVYKVMATDGIVPSVR-TYSVLMLAFGKRD--VETVVWLLREMEDHGVKPNVYSYTICIR 259

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
           VLG+ GRFE+ +  ++ M+++G    + T   +    C AG+  +A   F  M     + 
Sbjct: 260 VLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKP 319

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD---SFAILLEGWEKEGNVEEAN 237
           D V   +LL   C     +   +E  N +K   D   D   ++  +++   + G V+EA+
Sbjct: 320 DRVTYITLLDK-CGDNGDSRSVIEIWNAMK--ADGYNDNVVAYTAVVDALCQVGRVDEAS 376

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
             F +M ++    P+   +Y + +   ++  +++ AL+    M      P    +   ++
Sbjct: 377 DVFDQMKQK-GIEPQQY-SYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFIN 434

Query: 298 ILVKLNDSTHAVQLWDIMM-----------------------------VFH-----GAFP 323
              K  +S  A++ +++M                              VFH     G  P
Sbjct: 435 YYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCP 494

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D++TY M+ +C  K     E  K F EMI+    P  L   + I  L  A     A +I+
Sbjct: 495 DNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIF 554

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           + + E  + P + + N LL GL   G++ +V    EEM
Sbjct: 555 HELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEM 592



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 107/472 (22%), Positives = 182/472 (38%), Gaps = 54/472 (11%)

Query: 33  HRPTRPRFPTHLDAPYISSSARIICEILAHASSDDI-ESALACTGIIPTPDLVHEVLQLS 91
            +P R  + T LD    +  +R + EI     +D   ++ +A T ++     V  V    
Sbjct: 317 QKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRV---- 372

Query: 92  YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTF 150
            D  S   D  +   +G     Y++N ++    K  R          M   G   +  T+
Sbjct: 373 -DEASDVFDQMKQ--KGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTY 429

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
               + Y  +G+  +A+  +++M   G+  DVVA N++L ++ +   +   A    + +K
Sbjct: 430 VLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKS-GRLGMAKRVFHELK 488

Query: 211 KI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF---------------------- 247
            I V PD  ++ ++++   K  N +EA K F EM+E                        
Sbjct: 489 SIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGN 548

Query: 248 -EWNPEHVL----------AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
             W   H L           Y T L  L R  +V E +  L  M   +  P L  ++  L
Sbjct: 549 EAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVL 608

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
           D L K  +  +A+ +    M   G  PD  +YN     L+K  R+ E  + F +M K   
Sbjct: 609 DCLCKNGEVNYALGML-YNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKKVLA 667

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
                 C    + + +    E    +  YIL+ G     +S + L+ G+     +     
Sbjct: 668 PDYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIE 727

Query: 417 FAEEMLNRRILIYEVTMHKL-------KKAFYNESRSMRDIFDSLERRCKTS 461
           FAE +   RIL+ +  +  L       KKA   E+  +   F+SL    KT 
Sbjct: 728 FAENIALSRILLDDFFLSPLIRHLCKSKKAL--EAHELVKKFESLGVSLKTG 777



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 4/246 (1%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDV 172
            + +NL++D +GK+ R E M    + M   G  S   T+ +I      +    EA+  +  
Sbjct: 812  FTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYK 871

Query: 173  MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
            +   G          LL  + +          F   +     P+   + ILL G+   GN
Sbjct: 872  LMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGN 931

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
             E+  + F  MV++   NP+ + +Y   +  L    +++++L + R +      P L  +
Sbjct: 932  TEKVCELFQNMVDQ-GINPD-IKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITY 989

Query: 293  SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
            +  +  L +      AV L++ M    G  P+  TYN +   L K  +  E  K + E++
Sbjct: 990  NLLIHGLGRSGRLEEAVSLFNDMEK-SGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELL 1048

Query: 353  KNEWQP 358
            KN W+P
Sbjct: 1049 KNGWKP 1054



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 151/363 (41%), Gaps = 24/363 (6%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L+ Y +N ++  L K+G   +     +VM  DG++ S+ T++ +  ++ G    +  
Sbjct: 177 GIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAF-GKRDVETV 235

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAIC-RQENQTSRALEFLNRVKKIVD----PDGDSFA 221
           V     M  HGV+ +V +       IC R   Q  R  E    ++K+ D    PD  +  
Sbjct: 236 VWLLREMEDHGVKPNVYSY-----TICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNT 290

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +L++     G V +A   F +M +  +  P+ V  Y T L            ++    MK
Sbjct: 291 VLIQILCDAGRVSDAKDVFWKM-KASDQKPDRV-TYITLLDKCGDNGDSRSVIEIWNAMK 348

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            +     +  ++  +D L ++     A  ++D  M   G  P   +YN +    +K  R+
Sbjct: 349 ADGYNDNVVAYTAVVDALCQVGRVDEASDVFD-QMKQKGIEPQQYSYNSLISGFLKADRL 407

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITML---LDADEPEIAIEIWNYILENGILPLEASA 398
           +   + F+ M  N   PTP N  T +  +     + E   AI+ +  +   GI+P   + 
Sbjct: 408 NHALELFNHM--NIHGPTP-NGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAG 464

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT---MHKLKKAFYNESRSMRDIFDSLE 455
           N +L  L   GRL   +R   E+ +  +    +T   M K      N   +M+   + +E
Sbjct: 465 NAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIE 524

Query: 456 RRC 458
            RC
Sbjct: 525 TRC 527



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 87/421 (20%), Positives = 166/421 (39%), Gaps = 98/421 (23%)

Query: 96  SSAVDFFRWAGRGQR------------LSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           +S +D    AGRG              L P    +N ++  LG+ G+ +++ + +  M  
Sbjct: 535 NSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNS 594

Query: 142 DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
           +    +L T+ ++ D  C  G+ + A+     M+M G   D+ + N+ L  + + E++ +
Sbjct: 595 NSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVK-EDRLT 653

Query: 201 RALEFLNRVKKIVDP------------------------------------DGDSFAILL 224
            A     ++KK++ P                                    D  SF  L+
Sbjct: 654 EAFRIFCQMKKVLAPDYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLM 713

Query: 225 EGWEKEGNVEEANKTFGE-------MVERFEWNP---------------EHVLAYETFLI 262
           EG  K   +E++ + F E       +++ F  +P               E V  +E+  +
Sbjct: 714 EGILKRAGMEKSIE-FAENIALSRILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGV 772

Query: 263 TLIRGKQ------------VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           +L  G              +D A      MK   C P    ++  LD + K      +++
Sbjct: 773 SLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGK------SMR 826

Query: 311 LWDIMMV-----FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
           + D++ V       G     +TYN I   L+K+K ++E    +++++   + PTP     
Sbjct: 827 IEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGP 886

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
            +  LL   + E A ++++ +L+ G  P  A  N LL G R  G    V    + M+++ 
Sbjct: 887 LLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQG 946

Query: 426 I 426
           I
Sbjct: 947 I 947



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 112/281 (39%), Gaps = 38/281 (13%)

Query: 177  GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
            GV     + N+L+  +   EN    A    + +K++  DPD  ++ ++L+   K   +E+
Sbjct: 771  GVSLKTGSYNALICGLV-DENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIED 829

Query: 236  ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
              K   EM    +      + Y T +  L++ K + EA+     +  E   PT   +   
Sbjct: 830  MLKVQKEM--HCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPL 887

Query: 296  LDILVKLNDSTHAVQLWDIM----------------------------------MVFHGA 321
            LD L+K      A  L+D M                                  MV  G 
Sbjct: 888  LDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGI 947

Query: 322  FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
             PD  +Y ++   L    R+++   +F ++ +   +P  +     I  L  +   E A+ 
Sbjct: 948  NPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVS 1007

Query: 382  IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
            ++N + ++GI P   + N L++ L   G+ ++  +  EE+L
Sbjct: 1008 LFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELL 1048



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 103/230 (44%), Gaps = 6/230 (2%)

Query: 101  FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
            +++    G   +P  +  ++D L K+G+ E   +    M + G   +   +  + + Y  
Sbjct: 869  YYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRL 928

Query: 160  AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGD 218
            AG  ++    F  M   G+  D+ +   L+ A+C    + + +L +  ++ ++ ++PD  
Sbjct: 929  AGNTEKVCELFQNMVDQGINPDIKSYTVLIGALC-TAGRLNDSLSYFRQLTELGLEPDLI 987

Query: 219  SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            ++ +L+ G  + G +EEA   F +M E+    P ++  Y + ++ L +  +  EA K   
Sbjct: 988  TYNLLIHGLGRSGRLEEAVSLFNDM-EKSGIAP-NLYTYNSLILYLGKEGKAAEAGKMYE 1045

Query: 279  VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
             +      P + F  NAL     ++ ST         M+  G  P+S TY
Sbjct: 1046 ELLKNGWKPNV-FTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTY 1094


>gi|255660962|gb|ACU25650.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 376

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 165/364 (45%), Gaps = 20/364 (5%)

Query: 80  TPD-LVHEVLQLSYDSPSSAVDFFR-W---AGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           +PD +V+  +   Y   +   D F  W      G R S  ++N+M+  L  NG+ +++ +
Sbjct: 22  SPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNGKVDEVIS 80

Query: 135 AVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
              +MKE G V    T+  +   +C  G  D+++   ++    G   D  A +++++ +C
Sbjct: 81  IWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLC 140

Query: 194 RQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           ++ N   RAL  LN  +K    P+   +  L+ G       E+A + F EM      +P 
Sbjct: 141 KEAN-LDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREM-GTMHCSPT 198

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            ++ Y T +  L + +   EA   ++ +  +   P +  +S  +  L   +    A+QLW
Sbjct: 199 -IITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLW 257

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML-- 370
           +  +   G  PD   +N++   L    ++      + +M  N W+  P N  +  T++  
Sbjct: 258 N-QVTSKGFKPDVQMHNILIHGLCSVGKIQLALSLYFDM--NRWKCAP-NLVSHNTLMEG 313

Query: 371 --LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 428
              D D    A+ IW  IL NG+ P   S N  L GL +  R+SD   F  + + ++I++
Sbjct: 314 FYKDGDIRN-ALVIWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVL 372

Query: 429 YEVT 432
            ++T
Sbjct: 373 TKIT 376


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 146/331 (44%), Gaps = 6/331 (1%)

Query: 93  DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151
           D   + V F R    G   + Y + +M++   K G  +  +   + MK  GVL +L T+ 
Sbjct: 157 DIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYN 216

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
           S+   YC  GK   A   FD +S  GV  + V  N L+  +CR+  Q S+A   L R+K+
Sbjct: 217 SLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRK-GQVSKAEGLLERMKR 275

Query: 212 I-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
             ++P   +F +L++G    G +++A  ++ E ++     P  V  Y   +    +    
Sbjct: 276 AHINPTTRTFNMLMDGLCNTGQLDKA-LSYLEKLKLIGLCPTLV-TYNILISGFSKVGNS 333

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
               + +R M+     P+   ++  ++  V+ +D   A +++ +M    G  PD  TY +
Sbjct: 334 SVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRI-GLVPDQHTYGV 392

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +   L     + E  K +  M++   QP  +   T I           A++    +++NG
Sbjct: 393 LIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNG 452

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           + P  AS    +  L   G+  + +R  +EM
Sbjct: 453 VTPNVASYISTIQILCKDGKSIEAKRLLKEM 483



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/335 (19%), Positives = 131/335 (39%), Gaps = 40/335 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +G   S +++N  +D+L K+G  ++ W                    F  Y G  ++D  
Sbjct: 67  KGHSPSSFSFNNALDLLAKSGNLDRTW------------------GFFTEYLGRTQFD-- 106

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
           V SF +                + A C   N  S+  E L +++ + V P+   + IL+E
Sbjct: 107 VYSFWIT---------------IKAFCENGN-VSKGFELLAQMETMGVSPNVFIYTILIE 150

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              + G++++A   F  M +      +++  Y   +    +     +  +  + MK    
Sbjct: 151 ACCRNGDIDQAKVMFSRMDDLGLAANQYI--YTIMINGFFKKGYKKDGFELYQKMKLVGV 208

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P L  +++ +    +    + A +++D  +   G   +++TYN++   L +  +V + E
Sbjct: 209 LPNLYTYNSLITEYCRDGKLSLAFKVFD-EISKRGVACNAVTYNILIGGLCRKGQVSKAE 267

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
                M +    PT       +  L +  + + A+     +   G+ P   + N L+ G 
Sbjct: 268 GLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGF 327

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
             +G  S V     EM +R I   +VT   L   F
Sbjct: 328 SKVGNSSVVSELVREMEDRGISPSKVTYTILMNTF 362



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   S   + ++++   ++   E+ +    +MK  G++    T+  +    C  G   E
Sbjct: 346 RGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVE 405

Query: 166 AVMSFDVM-SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAIL 223
           A   +  M  MH    DV+  N++++  C++ N + +AL+FL   VK  V P+  S+   
Sbjct: 406 ASKLYKSMVEMHLQPNDVI-YNTMINGYCKECN-SYKALKFLEEMVKNGVTPNVASYIST 463

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           ++   K+G   EA +   EM E     PE + +
Sbjct: 464 IQILCKDGKSIEAKRLLKEMTEAGLKPPESLCS 496


>gi|255660952|gb|ACU25645.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 376

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 164/364 (45%), Gaps = 20/364 (5%)

Query: 80  TPD-LVHEVLQLSYDSPSSAVDFFR-W---AGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           +PD +V+  +   Y   +   D F  W      G R S  ++N+M+  L  NG+ +++ +
Sbjct: 22  SPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNGKVDEVIS 80

Query: 135 AVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
              +MKE G V    T+  +   +C  G  D+++   ++    G   D  A +++++ +C
Sbjct: 81  IWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLC 140

Query: 194 RQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           ++ N   RAL  LN  +K    P+   +  L+ G       E+A + F EM       P 
Sbjct: 141 KEAN-LDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMH--CPP 197

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            ++ Y T +  L + +   EA   ++ +  +   P +  +S  +  L   +    A+QLW
Sbjct: 198 TIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLW 257

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML-- 370
           +  +   G  PD   +N++   L    ++      + +M  N W+  P N  +  T++  
Sbjct: 258 N-QVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDM--NRWKCAP-NLVSHNTLMEG 313

Query: 371 --LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 428
              D D    A+ IW  IL NG+ P   S N  L GL +  R+SD   F  + + ++I++
Sbjct: 314 FYKDGDIRN-ALVIWARILRNGLEPDIISYNITLKGLCSCKRISDAILFLHDAVTKKIVL 372

Query: 429 YEVT 432
            ++T
Sbjct: 373 TKIT 376



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/338 (19%), Positives = 131/338 (38%), Gaps = 40/338 (11%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
            ++SP A  +N M++   +  + +  +    +M  +G  S+ +F  +       GK DE 
Sbjct: 19  SKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVSSFNIMMRGLFDNGKVDEV 78

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +  +++M   G  +D +    L+   C+      ++L                   +LE 
Sbjct: 79  ISIWELMKESGFVEDSITYGILVHGFCKN-GYIDKSLH------------------VLEM 119

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
            E++G V +A                   AY   +  L +   +D AL  L  M    C 
Sbjct: 120 AEQKGGVLDA------------------FAYSAMINGLCKEANLDRALSVLNGMIKSGCK 161

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P +  ++  ++ L   +    A++++  M   H   P  +TYN +   L KN+   E   
Sbjct: 162 PNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCP-PTIITYNTLINGLCKNEMFGEAYN 220

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
              E++     P  +  +  +  L    + E A+++WN +   G  P     N L+ GL 
Sbjct: 221 LVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLC 280

Query: 407 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           ++G++        +M   +     V+ + L + FY + 
Sbjct: 281 SVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDG 318


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 142/356 (39%), Gaps = 40/356 (11%)

Query: 104 WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGA 160
            A RG + +  ++N +++ L K  R+ +    VR M   G  S P   T++++   YC A
Sbjct: 36  MAARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKA 95

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           GK +E+      +   G+  D +    +++++C+              ++    P   +F
Sbjct: 96  GKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITF 155

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+ G  +E N+E A+     M          V+ Y T +  L +  ++ EA + L  M
Sbjct: 156 NTLISGCCREKNLEMADSLLQTMAA--SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERM 213

Query: 281 KGENCFPTLKFFS-------------NALDILVKLNDSTH-------------------- 307
           K   C P +  +S             NA  +L ++ DS H                    
Sbjct: 214 KASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKI 273

Query: 308 --AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
             A+++ + M    G   + + Y+ + + L K  R  E       M +   +P  +  ++
Sbjct: 274 DTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSS 333

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            +  L  A + E A+E    +   G  P   +   L+ GL + GRL++  R  EEM
Sbjct: 334 LVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEM 389



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 117/277 (42%), Gaps = 16/277 (5%)

Query: 104 WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
            A  G +     +N ++D L K GR ++    +  MK  G    +  ++S     C +GK
Sbjct: 178 MAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGK 237

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS--- 219
              A    + M     + +VV  N++L  +C+   +   ALE +   +++   DG     
Sbjct: 238 VLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKS-GKIDTALEMM---EQMASSDGCGLNV 293

Query: 220 --FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
             ++ +++G  K G  +EA     E + R    P+ V+ Y + +  L +  +++EA++ +
Sbjct: 294 VGYSTVVDGLCKLGRTQEARSVM-EAMARAGCRPD-VVTYSSLVNGLCKAGKIEEAVEAV 351

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF----PDSLTYNMIFE 333
           R M  E C P    + + +  L        A ++ + M    G      P   TYN +  
Sbjct: 352 REMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIG 411

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
            L K  R+ +  KFF  M      P  ++ +T +  L
Sbjct: 412 GLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGL 448



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 138/316 (43%), Gaps = 14/316 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN---QTSRALEF 205
           TF ++ + +   G+  +     + M+  G++ +VV+ N LL  +C+ E          + 
Sbjct: 12  TFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDM 71

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           ++R  +   PD  +++ LL G+ K G VEE+ +   E++ R    P+  L Y   + +L 
Sbjct: 72  ISRGGRST-PDLVTYSTLLSGYCKAGKVEESRELLKEVISRG-LRPD-ALMYTKVMASLC 128

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           +  ++ EAL+ L  M    C PTL  F+  +    +  +   A  L   M    G   D 
Sbjct: 129 KSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAA-SGVKADV 187

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TYN + + L K  R+ E E+    M  +   P  +  ++ +  L  + +   A ++   
Sbjct: 188 VTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQ 247

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR-----RILIYEVTMHKLKKAF 440
           + ++   P   + N +L GL   G++       E+M +       ++ Y   +  L K  
Sbjct: 248 MRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCK-- 305

Query: 441 YNESRSMRDIFDSLER 456
              ++  R + +++ R
Sbjct: 306 LGRTQEARSVMEAMAR 321



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 93/199 (46%), Gaps = 7/199 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVM-KEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +N ++D L K+G+ +     +  M   DG  L++  ++++ D  C  G+  EA    + M
Sbjct: 260 YNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAM 319

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
           +  G   DVV  +SL++ +C+   +   A+E +  +  +   P+  ++  L+ G    G 
Sbjct: 320 ARAGCRPDVVTYSSLVNGLCKA-GKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGR 378

Query: 233 VEEANKTFGEMVERF---EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           + EA +   EM       +  P  V  Y   +  L +  ++D+ALKF + M+ + C P  
Sbjct: 379 LAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDG 438

Query: 290 KFFSNALDILVKLNDSTHA 308
             +S  ++ L +   +  A
Sbjct: 439 VSYSTIVEGLARSGRALQA 457



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 15/212 (7%)

Query: 33  HRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACT-GIIPTPDLVHEVLQLS 91
           H P    + T LD    S       E++   +S D      C   ++    +V  + +L 
Sbjct: 253 HDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSD-----GCGLNVVGYSTVVDGLCKLG 307

Query: 92  YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTF 150
               + +V     A  G R     ++ +V+ L K G+ E+   AVR M  +G   +  T+
Sbjct: 308 RTQEARSV-MEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTY 366

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD-----VVAVNSLLSAICRQENQTSRALEF 205
            S+    C  G+  EA    + MS  G   D     V   N+L+  +C+   +   AL+F
Sbjct: 367 CSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKA-GRIDDALKF 425

Query: 206 LNRVK-KIVDPDGDSFAILLEGWEKEGNVEEA 236
             R++ +  DPDG S++ ++EG  + G   +A
Sbjct: 426 FQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457


>gi|255660940|gb|ACU25639.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 484

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 135/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  + +S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSIDHELVYNVLHSAKNS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY  AG   E+V  F  M   GVE+ + + ++L   
Sbjct: 65  RCILLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E  P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMKSR-EIMP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++ 
Sbjct: 184 D-VVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRF 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GMKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPT 289



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 11/226 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K G V+E+ K F +M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVER------TIKSYDAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMMWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D  + A+
Sbjct: 181 IMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
                +   G+ P   + + LL GL N  ++S+ R   +EM+++ I
Sbjct: 241 RFVEEMKGFGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYI 286



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 116/292 (39%), Gaps = 38/292 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N MV+   +  + E+       MK   +  ++ T+ ++   Y    + D+A+   + M 
Sbjct: 188 YNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRFVEEMK 247

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS-FAILLEGWEKEGNV 233
             G++ + +  ++LL  +C  E  +         V K + P  +S F  L+ G  K G++
Sbjct: 248 GFGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISGQCKAGDL 307

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL-RVMKGENCFPTLKFF 292
           + A      M+ R    P     Y   +    +  + D+A+K L +V++           
Sbjct: 308 DAAANVLKAMI-RLSV-PTEAGHYGVLIENYCKAGEYDKAIKLLDKVIEK---------- 355

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
               DI+++   + H                +S  YN + E L  N +  + E    +++
Sbjct: 356 ----DIILRPQSTLHM---------------ESSAYNPLIEYLCNNGQTAKAEALVRQLM 396

Query: 353 KNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
           K   Q PT LN  T I        P+ A E+   +L   +   E SA + LV
Sbjct: 397 KLGVQDPTALN--TLIRGHSQEGSPDSAFELLKIMLRRKV-DSEQSAYDSLV 445


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 132/289 (45%), Gaps = 6/289 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +VD L K G+  +  + V +M   GV  ++ T+ ++ D +C   + DEAV  FD M 
Sbjct: 282 FSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMV 341

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            +G   +V++ N+L++  C+ +        F    +K + P+  ++  L+      G ++
Sbjct: 342 HNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHV-GRLQ 400

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A   F EMV   +  P+ +  Y   L  L +   +DEA+  L+ ++G N  P ++ ++ 
Sbjct: 401 DAIALFHEMVAHGQI-PD-LATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTI 458

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +D + +  +   A  ++   +   G  P+  TY ++   L +   + E  K F EM  N
Sbjct: 459 VIDGMCRAGELEAARDIFS-NLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGN 517

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
              P      T    LL   E   AI++   +L  G    + S   LLV
Sbjct: 518 GCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARG-FSADVSTTTLLV 565



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 132/324 (40%), Gaps = 42/324 (12%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +  S     +Y       + M   G+  DV  +N L+++ C   N+   A   L ++
Sbjct: 72  FNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHL-NRLGFAFSVLAKI 130

Query: 210 KKIV-DPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRG 267
            K+   PD  +F  L+ G   EG + +A   F +M+ E F+ N   V+ Y T +  L + 
Sbjct: 131 LKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPN---VVTYGTLINGLCKV 187

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
              + A++ LR M+  NC P +  +++ +D L K    T A  L+   MV  G  PD  T
Sbjct: 188 GNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFS-KMVGQGISPDIFT 246

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI-----------------TML 370
           Y  +   L        V    ++MI ++  P  +  +T +                  M+
Sbjct: 247 YTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMI 306

Query: 371 LDADEPEI------------------AIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +   EP +                  A+++++ ++ NG  P   S N L+ G   + R+ 
Sbjct: 307 IRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMD 366

Query: 413 DVRRFAEEMLNRRILIYEVTMHKL 436
                 EEM  + ++   VT + L
Sbjct: 367 KATYLFEEMCQKELIPNTVTYNTL 390



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/315 (20%), Positives = 135/315 (42%), Gaps = 14/315 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++ +  C  G  + A+     M     + DVV   S++ ++C+    T     F   
Sbjct: 176 TYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKM 235

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V + + PD  ++  L+         +       +M+   +  P+ V+ + T +  L +  
Sbjct: 236 VGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINS-KIMPD-VVIFSTVVDALCKEG 293

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           ++ EA   + +M      P +  ++  +D     ++   AV+++D  MV +G  P+ ++Y
Sbjct: 294 KITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDT-MVHNGYAPNVISY 352

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML--LDADEPEIAIEIWNYI 386
           N +     K +R+ +    F EM + E  P   N  T  T++        + AI +++ +
Sbjct: 353 NTLINGYCKIQRMDKATYLFEEMCQKELIP---NTVTYNTLMHXCHVGRLQDAIALFHEM 409

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYN 442
           + +G +P  A+   LL  L     L +     + +    ++  I IY + +  + +A   
Sbjct: 410 VAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRA--G 467

Query: 443 ESRSMRDIFDSLERR 457
           E  + RDIF +L  +
Sbjct: 468 ELEAARDIFSNLSSK 482


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 143/305 (46%), Gaps = 19/305 (6%)

Query: 96  SSAVDFFRWAGRGQRLSPY--AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFAS 152
           + A+ +F    R + ++P+  A++ ++D L K GR ++ +  + R+++   +  + TF+ 
Sbjct: 700 TEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSI 759

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK- 211
           + +  C AG+ D  +  F  M+  G + D+ A N++++A C +  + S A   L  +K  
Sbjct: 760 LINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLK-GEFSAAYALLEEMKTH 818

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV---LAYETFLITLIRGK 268
            +  +  +  I+++       ++EA       V  F   PE     ++Y T + +L+  +
Sbjct: 819 GIAKNTVTHGIVIKALCGNDRIDEA-------VSYFHSIPEDCRDEISYNTLITSLVASR 871

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           + ++AL+ LR M  +   P    +   +D L K      A +L   M    G  PD  TY
Sbjct: 872 RSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRS-RGHSPDLRTY 930

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
            ++   L K K++     +F EM++   +P  +  ++ I     AD+ + A   W  +  
Sbjct: 931 TIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDA---WKLLRS 987

Query: 389 NGILP 393
           +GI P
Sbjct: 988 SGIEP 992



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/374 (20%), Positives = 158/374 (42%), Gaps = 48/374 (12%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL---------------------- 145
           G R +   ++ +VD L K GR E     +R M++ G L                      
Sbjct: 573 GCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREA 632

Query: 146 --------------SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
                         S+ T+ ++    C +G++DEAV   D M+  G   + +  +S++  
Sbjct: 633 VGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDG 692

Query: 192 ICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
           +C+   + + AL +  ++ +  +V P   +++ L++G  K G ++EA +    M+ R   
Sbjct: 693 LCKA-GRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMI-RAGR 750

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
            P+ V+ +   +  L    ++D  L+    M    C   +  ++  ++      + + A 
Sbjct: 751 IPD-VVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAY 809

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
            L + M   HG   +++T+ ++ + L  N R+ E   +FH + ++       N  T IT 
Sbjct: 810 ALLEEMKT-HGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEISYN--TLITS 866

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR---- 425
           L+ +   E A+E+   ++ +G  P   +   ++ GL   G      +  +EM +R     
Sbjct: 867 LVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPD 926

Query: 426 ILIYEVTMHKLKKA 439
           +  Y + +  L KA
Sbjct: 927 LRTYTIMISGLSKA 940



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 151/369 (40%), Gaps = 56/369 (15%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +A++ ++  L +  R E+    ++ M    V ++  F S+ +  C A + DEA   FDVM
Sbjct: 279 FAFSSLLHGLCQAHRLEEAIQLLKAMP--CVPNVVCFNSLMNGLCQARRVDEAFELFDVM 336

Query: 174 SMHGVEQDVVAVNSLLSAIC--RQENQTSRALEFLNRVKKI------------------- 212
              G   DV+  N LL  +C  R+  +  R +E + R +                     
Sbjct: 337 KESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGR 396

Query: 213 ----------------VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
                           + P+  ++A LLEG  K G+     + F +M+ER EW       
Sbjct: 397 VNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLER-EWRSSSSWP 455

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
                   I   +VD    FL V   + C PTL  ++  +  L K      A+ L + M 
Sbjct: 456 --------IHSPEVD----FLMV---QVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFM- 499

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
           +  G  PD +T+N + + L K +R+ +    F   ++   +P  +  +T I  L    + 
Sbjct: 500 IESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKM 559

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           + A+++   ++E G      + + ++ GL  +GR+ D      +M +   L   VT + L
Sbjct: 560 DEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTL 619

Query: 437 KKAFYNESR 445
              F+   R
Sbjct: 620 IDGFFKRQR 628



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 135/338 (39%), Gaps = 5/338 (1%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
           LSP    +N ++D L K  R     N  +   E G   ++ T++++ D      K DEA+
Sbjct: 504 LSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEAL 563

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
                M   G   + V  ++++  + +        +           PD  ++  L++G+
Sbjct: 564 QLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGF 623

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            K   + EA     EM+E   ++P  V+ Y T    L R  + DEA++ L  M    C P
Sbjct: 624 FKRQRLREAVGLLREMLEA-GFHPS-VVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAP 681

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
               +S+ +D L K    T A+  ++ M       P  + Y+ + + L K  R+ E  +F
Sbjct: 682 NAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEF 741

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
              MI+    P  +  +  I  L DA   +  +E++  + E G      + N ++     
Sbjct: 742 LERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCL 801

Query: 408 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            G  S      EEM    I    VT   + KA     R
Sbjct: 802 KGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDR 839



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 148/387 (38%), Gaps = 74/387 (19%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT---FASIFDSYCGAGKYDEAVMSFDV 172
           +N MVD L K GR E     ++++ E    S PT   F    D    AG    A   FD 
Sbjct: 179 YNTMVDGLYKAGRLEAAGMVLQLLAES--FSSPTVFTFTIAVDGLSKAGNLTGAYEFFDS 236

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   GV  + V  ++L+  +C+   +   AL  L    K       +F+ LL G  +   
Sbjct: 237 MPQTGVSPNTVTYDALIDGLCKA-GKLDIALGLLR--DKNSQAGMFAFSSLLHGLCQAHR 293

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK----------- 281
           +EEA     ++++     P +V+ + + +  L + ++VDEA +   VMK           
Sbjct: 294 LEEAI----QLLKAMPCVP-NVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITY 348

Query: 282 -------------------------GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
                                     E C P +  FS  +  L        A ++++ M+
Sbjct: 349 NILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMV 408

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW-------------------- 356
              G  P+  TY  + E L K      +E+ F +M++ EW                    
Sbjct: 409 AVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQV 468

Query: 357 -QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
            +PT +   T +T L  +     A+ +  +++E+G+ P   + N +L GL    R+ D  
Sbjct: 469 CRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAH 528

Query: 416 RFAEEMLNR----RILIYEVTMHKLKK 438
              +  L R     ++ Y   +  L K
Sbjct: 529 NVFKRALERGCRPNVVTYSTLIDGLSK 555



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 149/386 (38%), Gaps = 68/386 (17%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
           AGRG   +   +N +V+ L   GR ++ ++ +  M  +G    L TF  I    C  G+ 
Sbjct: 63  AGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEI 122

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
           + A    D M   G   DV     LL A+C +  +   A  F  +V  I   PD  ++  
Sbjct: 123 EAAFRVVDEMVDRGFVPDVEIHTVLLHALC-ELGRVDEAWFFFQQVLLIGFTPDAVTYNT 181

Query: 223 LLEGWEKEGNVEEANKTFGEMVER----------------------------FEWNPE-- 252
           +++G  K G +E A      + E                             F+  P+  
Sbjct: 182 MVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTG 241

Query: 253 ---HVLAYETFLITLIRGKQVDEALKFLR-----------------------------VM 280
              + + Y+  +  L +  ++D AL  LR                             ++
Sbjct: 242 VSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLL 301

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
           K   C P +  F++ ++ L +      A +L+D+M    G   D +TYN++ + L K +R
Sbjct: 302 KAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKE-SGCSADVITYNILLKGLCKLRR 360

Query: 341 VHEVEKFFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILE-NGILPLEASA 398
           + E  +    M + E   P  +  +T I  L +A     A E++  ++   GI P   + 
Sbjct: 361 IPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTY 420

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNR 424
             LL GL   G    + +  E+ML R
Sbjct: 421 AFLLEGLCKAGDSRRLEQCFEQMLER 446



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 124/298 (41%), Gaps = 41/298 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N++++ L K GR    + A R   + G   ++ T++++ D  C   + D+     + M+
Sbjct: 4   YNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMA 63

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   + V  N+L++A+  Q  +   A   L R+      P+  +F ++++G  KEG +
Sbjct: 64  GRGCAPNAVTYNTLVNALLGQ-GRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEI 122

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E A +   EMV+R  + P+ V  +   L  L    +VDEA  F               F 
Sbjct: 123 EAAFRVVDEMVDR-GFVPD-VEIHTVLLHALCELGRVDEAWFF---------------FQ 165

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             L I                     G  PD++TYN + + L K  R+         + +
Sbjct: 166 QVLLI---------------------GFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAE 204

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +   PT      A+  L  A     A E ++ + + G+ P   + + L+ GL   G+L
Sbjct: 205 SFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKL 262



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 104/262 (39%), Gaps = 7/262 (2%)

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           +V  N L++ +C+          F   ++    P   +++ +++G  ++  V++  K   
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM  R      + + Y T +  L+   +  EA   L  M    C P L  F   +  L K
Sbjct: 61  EMAGR--GCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCK 118

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
             +   A ++ D  MV  G  PD   + ++   L +  RV E   FF +++   + P  +
Sbjct: 119 EGEIEAAFRVVD-EMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAV 177

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
              T +  L  A   E A  +   + E+   P   +    + GL   G L+    F + M
Sbjct: 178 TYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSM 237

Query: 422 ----LNRRILIYEVTMHKLKKA 439
               ++   + Y+  +  L KA
Sbjct: 238 PQTGVSPNTVTYDALIDGLCKA 259



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 83/198 (41%), Gaps = 6/198 (3%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++N ++  L  + R EQ    +R M  DG       + ++ D    AG  + A      M
Sbjct: 859  SYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEM 918

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               G   D+     ++S + + +        F   ++K + PD   ++ L++ + K   V
Sbjct: 919  RSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKV 978

Query: 234  EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            ++A K       R       +  Y T + +L + +  D+AL+ +R MK +NC P +  ++
Sbjct: 979  DDAWKLL-----RSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWT 1033

Query: 294  NALDILVKLNDSTHAVQL 311
            +     V       AV+L
Sbjct: 1034 SLATAYVAEGRVDEAVKL 1051



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 19/159 (11%)

Query: 94   SPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGR-------FEQMWNAVRVMKEDGVL 145
            SP  A    +    RG       + +M+  L K  +       FE+M    + +K D ++
Sbjct: 907  SPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLR--KNLKPDAIV 964

Query: 146  SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
                ++S+ D++C A K D+A   + ++   G+E  +   ++++ ++C+    T +ALE 
Sbjct: 965  ----YSSLIDAFCKADKVDDA---WKLLRSSGIEPTITMYSTMVDSLCKNRG-TDKALEV 1016

Query: 206  LNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
            +  +K K  +P    +  L   +  EG V+EA K   ++
Sbjct: 1017 IREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDL 1055


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 125/265 (47%), Gaps = 10/265 (3%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           N++VD L +     +    +R ++ DGV   ++ TF S+   YC AGK ++A+  ++ M 
Sbjct: 293 NIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMV 352

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G+  + V  N L++   +  +  S A+E   ++ ++   PD  +F+ L++G+ + G +
Sbjct: 353 ASGIMPNTVTYNVLINGYGKVGDLGS-AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQL 411

Query: 234 EEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK-GENCFPTLKF 291
           ++A + + +M + R + N   V  +   + +L +  + DEA+  L  +    +  P    
Sbjct: 412 DDALRIWSDMAQHRIQPN---VYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIAPQAFI 468

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +D+L K      A  L    M   G  PD  TY ++        R+ E   FFHEM
Sbjct: 469 YNPVIDVLCKCGKVDEA-NLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEM 527

Query: 352 IKNEWQPTPLNCATAITMLLDADEP 376
           ++    P  +     I+ LL A  P
Sbjct: 528 VEAGCSPDSITVNCFISCLLKAGMP 552



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 15/205 (7%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFD 171
           +N++++  GK G    + +AV V ++   L  P    TF+S+ D YC  G+ D+A+  + 
Sbjct: 363 YNVLINGYGKVG---DLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWS 419

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR--VKKIVDPDGDSFAILLEGWEK 229
            M+ H ++ +V   + ++ ++C+Q N++  A+  LN   ++  + P    +  +++   K
Sbjct: 420 DMAQHRIQPNVYTFSIIIHSLCKQ-NRSDEAICLLNELNLRPDIAPQAFIYNPVIDVLCK 478

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-- 287
            G V+EAN     M E+    P+    Y   +I      ++ EA+ F   M    C P  
Sbjct: 479 CGKVDEANLIRKGMEEK-GCRPDK-YTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDS 536

Query: 288 -TLKFFSNALDILVKLNDSTHAVQL 311
            T+  F + L      N+  H ++L
Sbjct: 537 ITVNCFISCLLKAGMPNEVDHVMRL 561



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 112/271 (41%), Gaps = 15/271 (5%)

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEG 231
           S H  +Q +V        +CR   Q   AL+  +++       PD    + L+       
Sbjct: 146 SAHSCQQIIVV-------LCRSGRQAD-ALQLFDQMTTHYGYSPDARFLSFLVSSCTC-A 196

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLI-RGKQVDEALKFLRVMKGENCFPTLK 290
           N+ +A+ T       F    E   AY   + +LI RG+  D    F R ++     P + 
Sbjct: 197 NLLDASATLLSKASEFGCRVE-AYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVW 255

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            F+  +  + ++     A++L + M  F G  PD++T+N+I + L +   V    +    
Sbjct: 256 SFNVVIKGVCRVGQVQKALELVERMNEF-GCSPDTVTHNIIVDGLCRTNEVSRGHEVLRR 314

Query: 351 MIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           + ++    P  +   + I+    A + E A+ ++N ++ +GI+P   + N L+ G   +G
Sbjct: 315 LQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVG 374

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
            L       ++M   R     VT   L   +
Sbjct: 375 DLGSAVEVYQQMTRLRCPPDVVTFSSLIDGY 405



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/293 (19%), Positives = 118/293 (40%), Gaps = 20/293 (6%)

Query: 158 CGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSAICRQENQT-------SRALEFLNRV 209
           C +G+  +A+  FD M+ H G   D   ++ L+S+ C   N         S+A EF  RV
Sbjct: 158 CRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSS-CTCANLLDASATLLSKASEFGCRV 216

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           +        ++  L+      G V +    F   ++   ++P+ V ++   +  + R  Q
Sbjct: 217 EAY------AYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPD-VWSFNVVIKGVCRVGQ 269

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           V +AL+ +  M    C P     +  +D L + N+ +   ++   +       P+ +T+ 
Sbjct: 270 VQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFT 329

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
            +     K  ++ +    +++M+ +   P  +     I       +   A+E++  +   
Sbjct: 330 SVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRL 389

Query: 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKK 438
              P   + + L+ G    G+L D  R   +M   RI      + + +H L K
Sbjct: 390 RCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 442


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 141/302 (46%), Gaps = 5/302 (1%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
           ++  S AV    R   RG + +   + ++V+ L K G  +   N +  M+   +   +  
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F +I DS C     D+A+  F  M   G+  +VV  +SL+S +C     +  +    + +
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
           +K ++P+  +F  L++ + KEG   EA K + +M++R   +P+ +  Y + +       +
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKR-SIDPD-IFTYNSLVNGFCMHDR 380

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           +D+A +    M  ++CFP +  ++  +    K        +L+   M   G   D++TY 
Sbjct: 381 LDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFR-EMSHRGLVGDTVTYT 439

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
            + + L  +      +K F +M+ +   P  +  +  +  L +  + E A+E+++Y+ ++
Sbjct: 440 TLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKS 499

Query: 390 GI 391
            I
Sbjct: 500 EI 501



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 149/334 (44%), Gaps = 8/334 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++++   +  +       + ++MK     S+ T +S+ + YC   +  +AV   D 
Sbjct: 121 YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 180

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G   D +   +L+  +    N+ S A+  ++R V++   P+  ++ +++ G  K G
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 239

Query: 232 NVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           + + A     +M   + E +   V+ + T + +L + + VD+AL   + M+ +   P + 
Sbjct: 240 DTDLALNLLNKMEAAKIEAD---VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVV 296

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +S+ +  L      + A QL   M +     P+ +T+N + +  +K  +  E EK + +
Sbjct: 297 TYSSLISCLCSYGRWSDASQLLSDM-IEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDD 355

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           MIK    P      + +      D  + A +++ +++     P   + N L+ G     R
Sbjct: 356 MIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 415

Query: 411 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           + D      EM +R ++   VT   L +  +++ 
Sbjct: 416 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 449



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 141/332 (42%), Gaps = 6/332 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  + K  +F+ + +    M+  + V  L T+  + + +C   +   A+     M 
Sbjct: 88  FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMM 147

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G E  +V ++SLL+  C  + + S A+  ++++ ++   PD  +F  L+ G       
Sbjct: 148 KLGYEPSIVTLSSLLNGYCHGK-RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 206

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA      MV+R    P +++ Y   +  L +    D AL  L  M+       +  F+
Sbjct: 207 SEAVALVDRMVQR-GCQP-NLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFN 264

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D L K      A+ L+  M    G  P+ +TY+ +  CL    R  +  +   +MI+
Sbjct: 265 TIIDSLCKYRHVDDALNLFKEMET-KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 323

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
            +  P  +     I   +   +   A ++++ +++  I P   + N L+ G     RL  
Sbjct: 324 KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK 383

Query: 414 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            ++  E M+++      VT + L K F    R
Sbjct: 384 AKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 415



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 7/299 (2%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG-DSF 220
           K D+A+  F  M        +V  N LLSAI + + +    +    +++++    G  ++
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMK-KFDVVISLGEKMQRLEIVHGLYTY 123

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            IL+  + +   +  A    G+M+ +  + P  ++   + L     GK++ +A+  +  M
Sbjct: 124 NILINCFCRRSQISLALALLGKMM-KLGYEPS-IVTLSSLLNGYCHGKRISDAVALVDQM 181

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                 P    F+  +  L   N ++ AV L D  MV  G  P+ +TY ++   L K   
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVD-RMVQRGCQPNLVTYGVVVNGLCKRGD 240

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
                   ++M   + +   +   T I  L      + A+ ++  +   GI P   + + 
Sbjct: 241 TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 300

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 457
           L+  L + GR SD  +   +M+ ++I    VT + L  AF  E +      ++D + +R
Sbjct: 301 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKR 359



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 66/131 (50%), Gaps = 3/131 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +++++D L  NG+ E+       M++  + L +  + ++ +  C AGK D+    F  +
Sbjct: 472 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 531

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLEGWEKEGN 232
           S+ GV+ +VV  N+++S +C +      A   L ++K+    P+  ++  L+    ++G+
Sbjct: 532 SLKGVKPNVVTYNTMISGLCSKR-LLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 590

Query: 233 VEEANKTFGEM 243
              + +   EM
Sbjct: 591 KAASAELIREM 601


>gi|15239018|ref|NP_196692.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174149|sp|Q9LFM6.1|PP375_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g11310, mitochondrial; Flags: Precursor
 gi|8953393|emb|CAB96666.1| putative protein [Arabidopsis thaliana]
 gi|110738090|dbj|BAF00978.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004275|gb|AED91658.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 158/375 (42%), Gaps = 53/375 (14%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYAWNLMVDVLGK 125
           +ESAL  TGI P+ +LVH +      SP      F+WA    G  LSP  ++ +V+ L K
Sbjct: 88  LESALDETGIEPSVELVHALFDRLSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVVNSLCK 147

Query: 126 NGRFEQMWNAV--RVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH----G 177
              FE  W+ V  RV  ++G  ++S  TF  +   Y  AG   +A+ +F+    +     
Sbjct: 148 AREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYEPVCK 207

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKEGNV 233
              ++  +  LL A+C+ E     A  +L R+   +D    P    F ILL GW +   +
Sbjct: 208 SATELRLLEVLLDALCK-EGHVREASMYLERIGGTMDSNWVPSVRIFNILLNGWFRSRKL 266

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK------------ 281
           ++A K + EM +     P  V+ Y T +    R ++V  A++ L  MK            
Sbjct: 267 KQAEKLWEEM-KAMNVKPT-VVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFN 324

Query: 282 ------GE-----------------NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
                 GE                    PT+  +++ +    K  D   A ++  +MM  
Sbjct: 325 PIIDGLGEAGRLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMT- 383

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            G  P + TYN  F+   K+ +  E    + ++I+    P  L     + ML +  +  +
Sbjct: 384 RGVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSL 443

Query: 379 AIEIWNYILENGILP 393
           A+++   +   GI P
Sbjct: 444 AMQVNKEMKNRGIDP 458


>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
 gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 155/364 (42%), Gaps = 11/364 (3%)

Query: 75  TGIIPTPDLVHEVLQLSY---DSPSSAVD-FFRWAGRGQRLSPYAWNLMVDVLGKNGRFE 130
           +GI  + DL   V++ SY     P  A+  F R    G R S  + N +++ L +N RF 
Sbjct: 115 SGINCSEDLFITVIR-SYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFS 173

Query: 131 QMWNAVRVMKED-GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
            +    +  K   GV+ ++ T   +  + C     + A   FD M   G+  +VV   ++
Sbjct: 174 SVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTI 233

Query: 189 LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
           L     + +       F         PD  ++ IL++G+ K+G   +A K   EM E   
Sbjct: 234 LGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEEN-G 292

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             P  +  Y   ++   + ++  EAL  L  M  +   P        +D+L        A
Sbjct: 293 VEPNDI-TYGVIILGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEA 351

Query: 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 368
            ++W+ ++      PD+   + +   L K   + E  K F+E  +     + L   T I 
Sbjct: 352 CKMWEKLLK-KNCTPDNAITSTLIHWLCKEGNIWEARKLFNEFERGTIS-SLLTYNTLIA 409

Query: 369 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 428
            + +  E   A  +W+ +LE G +P E + N L+ G   +G+  +V +  EEML++  L+
Sbjct: 410 GMCEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLL 469

Query: 429 YEVT 432
            E T
Sbjct: 470 NEST 473



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/403 (21%), Positives = 170/403 (42%), Gaps = 45/403 (11%)

Query: 98  AVDFFRWAGRGQRLSPY---AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASI 153
           A+  F +AG+      +    ++ ++  L +   FE + + +  +++ G+  S   F ++
Sbjct: 68  ALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGINCSEDLFITV 127

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKI 212
             SY  A +   A+ +F  +   GV + V ++N+LL+A+ +    +S  L F  ++ K  
Sbjct: 128 IRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFG 187

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V P+  +  IL++   K+ +VE A K F EM       P +V+ Y T L   +    +  
Sbjct: 188 VVPNVFTCNILIKALCKKNDVEGARKVFDEM-PSMGIVP-NVVTYTTILGGYVSRGDMIG 245

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A +    +      P    ++  +D  VK    T AV++ D  M  +G  P+ +TY +I 
Sbjct: 246 AKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMD-EMEENGVEPNDITYGVII 304

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
               K ++  E     ++M++ ++ P    C   I +L      + A ++W  +L+    
Sbjct: 305 LGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNCT 364

Query: 393 PLEA----------------------------------SANELLVGLRNLGRLSDVRRFA 418
           P  A                                  + N L+ G+  +G L +  R  
Sbjct: 365 PDNAITSTLIHWLCKEGNIWEARKLFNEFERGTISSLLTYNTLIAGMCEMGELCEAARLW 424

Query: 419 EEMLNRRILIYEVTMHKLKKAFYNESRS---MRDIFDSLERRC 458
           ++ML +  +  E T + L K F    ++   ++ + + L++ C
Sbjct: 425 DDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGC 467


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 151/376 (40%), Gaps = 41/376 (10%)

Query: 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGA 160
            R AG G  +  Y  N +V    + G  +     V +M + G+  +L TF S+ +  C A
Sbjct: 176 MRGAGCGPNVVTY--NTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKA 233

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           GK ++A   FD M   G+  D V+ N+L+   C+          F    +K + PD  +F
Sbjct: 234 GKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTF 293

Query: 221 AILLEGWEKEGNVEEANKTFGEMVER-FEWN----------------------------- 250
             L+    K GN+E A     +M ER  + N                             
Sbjct: 294 TSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQ 353

Query: 251 ---PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
                 V+ Y   +       ++DEA + L  M+ +   P +  +S  +    K N  TH
Sbjct: 354 CRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCK-NCDTH 412

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
           +    +  M+  G  PD++TY+ +   L + KR+ +    F  MIK   QP      + I
Sbjct: 413 SAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLI 472

Query: 368 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
                    E A+ + + +++ G+LP   + + L+ GL    R  + ++   ++ +   +
Sbjct: 473 DGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPI 532

Query: 428 ----IYEVTMHKLKKA 439
                Y+  MH  +KA
Sbjct: 533 PANTKYDALMHCCRKA 548



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 126/321 (39%), Gaps = 41/321 (12%)

Query: 139 MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--Q 195
           M  DGV  ++ T+  +  + CG G   EA+     M   G   +VV  N+L++A  R  +
Sbjct: 141 MLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGE 200

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
            +   R +  +  +   + P+  +F  ++ G  K G +E+A K F EM+ R    P+ V 
Sbjct: 201 VDGAERLVGMM--LDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMM-REGLAPDGV- 256

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW--- 312
           +Y T +    +     EAL     M  +   P +  F++ + ++ K  +   AV L    
Sbjct: 257 SYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQM 316

Query: 313 --------------------------DIMMVFHGAF-----PDSLTYNMIFECLIKNKRV 341
                                     D ++   G       P  + YN +        R+
Sbjct: 317 RERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRM 376

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E  +  HEM     +P  +  +T I+      +   A E+   +LE G+LP   + + L
Sbjct: 377 DEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSL 436

Query: 402 LVGLRNLGRLSDVRRFAEEML 422
           +  L    RLSD     + M+
Sbjct: 437 IRVLCEEKRLSDAHVLFKNMI 457



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 95/228 (41%), Gaps = 12/228 (5%)

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           + ++  A + F  M+   +    +V  Y   +  L       EAL  LR M+G  C P +
Sbjct: 128 DASLTSARRFFDSMLS--DGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNV 185

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             ++  +    +  +   A +L   MM+  G  P+ +T+N +   + K  ++ +  K F 
Sbjct: 186 VTYNTLVAAFFRAGEVDGAERLVG-MMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFD 244

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM++    P  ++  T +     A     A+ ++  + + GI+P   +   L+  +   G
Sbjct: 245 EMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAG 304

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKL-----KKAFYNES----RSMR 448
            L        +M  R + + EVT   L     KK F +++    R MR
Sbjct: 305 NLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMR 352



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 3/127 (2%)

Query: 298 ILVKLNDS--THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           +L+ L+D+  T A + +D M+   G  P+  TYN++   L       E      +M    
Sbjct: 122 VLLALSDASLTSARRFFDSMLS-DGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAG 180

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
             P  +   T +     A E + A  +   +L+ G+ P   + N ++ G+   G++ D R
Sbjct: 181 CGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDAR 240

Query: 416 RFAEEML 422
           +  +EM+
Sbjct: 241 KVFDEMM 247


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 122/280 (43%), Gaps = 13/280 (4%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           +  +   +C  GK +EA+     M + GV+ D+V    L+    + +++      FL  +
Sbjct: 615 YTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKV----FLGLL 670

Query: 210 KKIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           K++ D    PD   +  +++   K G+ +EA   +  M+   E    + + Y   +  L 
Sbjct: 671 KEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMIN--EGCVPNEVTYTAVINGLC 728

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK-LNDSTHAVQLWDIMMVFHGAFPD 324
           +   V+EA      M+  N  P    +   LDIL K + D   AV+L +   +  G   +
Sbjct: 729 KAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHN--AILKGLLAN 786

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
           + TYNM+     +  R+ E  +    MI +   P  +   T I+ L   ++ + AIE+WN
Sbjct: 787 TATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWN 846

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            + E GI P   + N L+ G    G +        EML +
Sbjct: 847 SMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQ 886



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 145/340 (42%), Gaps = 43/340 (12%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           R SP   A + +V+ L K G+ E+  N V+ + E GV  ++  + ++ DS C    +DEA
Sbjct: 327 RFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEA 386

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
            + FD M   G+  + V  + L+   CR+  +   AL FL  +  + + P    +  L+ 
Sbjct: 387 ELLFDRMGKIGLCPNDVTYSILIDMFCRR-GKLDTALSFLGEMIDMGLKPSVYPYNSLIN 445

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K G++  A     EM+ + +  P  V+ Y + +       ++++AL+    M G+  
Sbjct: 446 GHCKFGDISAAESLMAEMINK-KLEPT-VVTYTSLMGGYCSKGKINKALRLYHEMTGKGI 503

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P++  F+  L  L +      AV+L+  M  ++   P+ +TYN++ E   +   + +  
Sbjct: 504 VPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWN-VKPNRVTYNVMIEGYCEEGNMSKAF 562

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           +F +EMI                                   E GI+P   S   L+ GL
Sbjct: 563 EFLNEMI-----------------------------------EKGIVPDTYSYRPLIHGL 587

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
              G+ S+ + F + +      + E+    L   F  E +
Sbjct: 588 CLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGK 627



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 131/306 (42%), Gaps = 25/306 (8%)

Query: 82  DLVHEVLQLSYDSPSSA-----VDFFRWAGRGQR------------LSP--YAWNLMVDV 122
           +++ E+L+L + SPS A     V+  R  G+ +             +SP  + +N ++D 
Sbjct: 318 EMIDEMLRLRF-SPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDS 376

Query: 123 LGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           L K   F++       M + G+  +  T++ + D +C  GK D A+     M   G++  
Sbjct: 377 LCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPS 436

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           V   NSL++  C+  + ++        + K ++P   ++  L+ G+  +G + +A + + 
Sbjct: 437 VYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYH 496

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM  +       +  + T L  L R   + +A+K    M   N  P    ++  ++   +
Sbjct: 497 EMTGK--GIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCE 554

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
             + + A +  +  M+  G  PD+ +Y  +   L    +  E + F   + K   +   +
Sbjct: 555 EGNMSKAFEFLN-EMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEI 613

Query: 362 NCATAI 367
            C T +
Sbjct: 614 -CYTGL 618



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/341 (20%), Positives = 127/341 (37%), Gaps = 41/341 (12%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE------------- 196
           +  +  S C       A      M   G + ++V  N L+  +C+++             
Sbjct: 230 YTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLA 289

Query: 197 ---------------------NQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVE 234
                                 +    LE ++ + ++   P   + + L+EG  K G VE
Sbjct: 290 GKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVE 349

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA-LKFLRVMKGENCFPTLKFFS 293
           EA      + E F  +P ++  Y   + +L +G+  DEA L F R+ K   C P    +S
Sbjct: 350 EALNLVKRVAE-FGVSP-NIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLC-PNDVTYS 406

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D+  +      A+      M+  G  P    YN +     K   +   E    EMI 
Sbjct: 407 ILIDMFCRRGKLDTALSFLG-EMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMIN 465

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
            + +PT +   + +       +   A+ +++ +   GI+P   +   LL GL   G + D
Sbjct: 466 KKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRD 525

Query: 414 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
             +   EM    +    VT + + +  Y E  +M   F+ L
Sbjct: 526 AVKLFTEMAEWNVKPNRVTYNVMIEG-YCEEGNMSKAFEFL 565



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  +   +C  G+ +EA      M   GV  D +   +++S +CR+ N   +A+E  N 
Sbjct: 789 TYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRR-NDVKKAIELWNS 847

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           + +K + PD  ++  L+ G    G + +A +   EM+ +
Sbjct: 848 MTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQ 886


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 137/303 (45%), Gaps = 8/303 (2%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           R +  SP    +N+M+  L   G+ +     +  +  D    ++ T+  + ++    G  
Sbjct: 185 RSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGV 244

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           DEA+   D M   G++ D+   N+++  +C+ E    RA E +  ++ K  +PD  S+ I
Sbjct: 245 DEALKLMDEMLSRGLKPDMFTYNTIIRGMCK-EGMVDRAFEMVRNLELKGCEPDVISYNI 303

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL     +G  EE  K   +M    + +P +V+ Y   + TL R  +++EA+  L++MK 
Sbjct: 304 LLRALLNQGKWEEGEKLMTKMFSE-KCDP-NVVTYSILITTLCRDGKIEEAMNLLKLMKE 361

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +   P    +   +    +      A++  +  M+  G  PD + YN +   L KN +  
Sbjct: 362 KGLTPDAYSYDPLIAAFCREGRLDVAIEFLET-MISDGCLPDIVNYNTVLATLCKNGKAD 420

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +  + F ++ +    P   +  T  + L  + +   A+ +   ++ NGI P E + N ++
Sbjct: 421 QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMI 480

Query: 403 VGL 405
             L
Sbjct: 481 SCL 483



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 148/336 (44%), Gaps = 7/336 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG +   + +N ++  + K G  ++ +  VR ++  G    + ++  +  +    GK++E
Sbjct: 257 RGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEE 316

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
                  M     + +VV  + L++ +CR + +   A+  L  +K K + PD  S+  L+
Sbjct: 317 GEKLMTKMFSEKCDPNVVTYSILITTLCR-DGKIEEAMNLLKLMKEKGLTPDAYSYDPLI 375

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
             + +EG ++ A +    M+   +     ++ Y T L TL +  + D+AL+    +    
Sbjct: 376 AAFCREGRLDVAIEFLETMIS--DGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C P    ++     L    D   A+ +  + M+ +G  PD +TYN +  CL +   V E 
Sbjct: 434 CSPNSSSYNTMFSALWSSGDKIRALHMI-LEMMSNGIDPDEITYNSMISCLCREGMVDEA 492

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            +   +M   E+ P+ +     +     A   E AI +   ++ NG  P E +   L+ G
Sbjct: 493 FELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEG 552

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           +   G  ++    A +++ R   I E +  +L + F
Sbjct: 553 IGFAGYRAEAMELANDLV-RIDAISEYSFKRLHRTF 587



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 123/305 (40%), Gaps = 37/305 (12%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           IF   C +G Y E++   + M   G   DV+    L+       N   +A+  +  ++K 
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRN-IPKAVRVMEILEKF 153

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PD  ++  L+ G+ K   +++A +    M  + +++P+ V  Y   + +L    ++D 
Sbjct: 154 GQPDVFAYNALINGFCKMNRIDDATRVLDRMRSK-DFSPDTV-TYNIMIGSLCSRGKLDL 211

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV--------------- 317
           ALK L  +  +NC PT+  ++  ++  +       A++L D M+                
Sbjct: 212 ALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIR 271

Query: 318 -------------------FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
                                G  PD ++YN++   L+   +  E EK   +M   +  P
Sbjct: 272 GMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDP 331

Query: 359 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 418
             +  +  IT L    + E A+ +   + E G+ P   S + L+      GRL     F 
Sbjct: 332 NVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFL 391

Query: 419 EEMLN 423
           E M++
Sbjct: 392 ETMIS 396



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 137/347 (39%), Gaps = 39/347 (11%)

Query: 135 AVRVMK---EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           AVRVM+   + G   +  + ++ + +C   + D+A    D M       D V  N ++ +
Sbjct: 143 AVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGS 202

Query: 192 ICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER---- 246
           +C +  +   AL+ LN+ +     P   ++ IL+E    EG V+EA K   EM+ R    
Sbjct: 203 LCSR-GKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKP 261

Query: 247 --FEWNP---------------------------EHVLAYETFLITLIRGKQVDEALKFL 277
             F +N                              V++Y   L  L+   + +E  K +
Sbjct: 262 DMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLM 321

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M  E C P +  +S  +  L +      A+ L  +M    G  PD+ +Y+ +     +
Sbjct: 322 TKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE-KGLTPDAYSYDPLIAAFCR 380

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             R+    +F   MI +   P  +N  T +  L    + + A+EI+  + E G  P  +S
Sbjct: 381 EGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSS 440

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            N +   L + G          EM++  I   E+T + +      E 
Sbjct: 441 YNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREG 487



 Score = 38.9 bits (89), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 2/159 (1%)

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           R     E+L  L  M  +   P +   +  +     L +   AV++ +I+  F    PD 
Sbjct: 101 RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKF--GQPDV 158

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
             YN +     K  R+ +  +    M   ++ P  +     I  L    + ++A+++ N 
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           +L +   P   +   L+      G + +  +  +EML+R
Sbjct: 219 LLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSR 257


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 154/377 (40%), Gaps = 50/377 (13%)

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-- 148
           S   P+ A++  R   R   ++   +N ++      GR +   + +R M+E G ++ P  
Sbjct: 53  SAGKPARALELLRQMPRPNAVT---YNTVIAGFCSRGRVQAALDIMREMRERGGIA-PNQ 108

Query: 149 -TFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQ----------- 195
            T+ ++   +C  G+ DEAV  FD M   G V+ + V  N+L+   C Q           
Sbjct: 109 YTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRD 168

Query: 196 -----------------------ENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
                                  + + + A E +  +  K + PD  ++ IL+ G  KEG
Sbjct: 169 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 228

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           NV++A + F  M  R       V+ Y + +  L +  QV E  K           P L  
Sbjct: 229 NVKKALEIFENMSRR--GVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVL 286

Query: 292 FSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
           + NAL  +   + S +  + ++IM  M      PD +TYN +   L    RV E  K   
Sbjct: 287 Y-NAL--INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLID 343

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM K   QP  +   T I+      + + A+ I N ++  G  P   + N L+ GL   G
Sbjct: 344 EMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 403

Query: 410 RLSDVRRFAEEMLNRRI 426
           +  D     +EM+   I
Sbjct: 404 QGDDAENMVKEMVENGI 420



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 121/277 (43%), Gaps = 4/277 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           R   RG  ++   +NL+V  L  +GR  + +  V  M   G+   + T+  + + +C  G
Sbjct: 169 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 228

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
              +A+  F+ MS  GV   VV   SL+ A+ ++         F   V++ + PD   + 
Sbjct: 229 NVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 288

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+      GN++ A +  GEM E+    P+ V  Y T +  L    +VDEA K +  M 
Sbjct: 289 ALINSHSTSGNIDRAFEIMGEM-EKKRIAPDDV-TYNTLMRGLCLLGRVDEARKLIDEMT 346

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
                P L  ++  +       D   A+++ + MM   G  P  LTYN + + L KN + 
Sbjct: 347 KRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM-NKGFNPTLLTYNALIQGLCKNGQG 405

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            + E    EM++N   P      + I  L   DE  I
Sbjct: 406 DDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAI 442



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 141/351 (40%), Gaps = 50/351 (14%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L   TF  +    C AGK   A+     M       + V  N++++  C +  +   AL+
Sbjct: 39  LCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSR-GRVQAALD 93

Query: 205 FLN--RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
            +   R +  + P+  ++  ++ GW K G V+EA K F EM+ + E  PE V+ Y   + 
Sbjct: 94  IMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM-YNALIG 152

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
                 ++D AL +   M       T+  ++  +  L      T A +L +  M   G  
Sbjct: 153 GYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVE-EMGGKGLA 211

Query: 323 PDSLTYNM----------------IFE-------------------CLIKNKRVHEVEKF 347
           PD  TYN+                IFE                    L K  +V E +K 
Sbjct: 212 PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKL 271

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           F E ++   +P  +     I     +   + A EI   + +  I P + + N L+ GL  
Sbjct: 272 FDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCL 331

Query: 408 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR-DIFDSLERR 457
           LGR+ + R+  +EM  R I    VT + L   +     SM+ D+ D+L  R
Sbjct: 332 LGRVDEARKLIDEMTKRGIQPDLVTYNTLISGY-----SMKGDVKDALRIR 377


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 130/293 (44%), Gaps = 9/293 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++ L K+GR     +   ++ + G    + TF S+ D YC  GK D+A    D M 
Sbjct: 549 FNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAME 608

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           + GVE D+V  ++LL    +          F    +K V P+  ++ I+L G  + G   
Sbjct: 609 VVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTV 668

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A K F EM+E        V  Y   L  L R    DEA+   + +   N   ++   + 
Sbjct: 669 AARKKFHEMIE--SGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNT 726

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            ++ + K+     A +L+  +    G  P+  TY ++   L+K+  V +    F  M K+
Sbjct: 727 MINAMYKVQRKEEAKELFATISA-SGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKS 785

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYI--LENGILPLEASANELLVGL 405
              P        I MLL  ++ EIA +  NY+  ++   + LEAS   L++ L
Sbjct: 786 GIVPGSRLLNRIIRMLL--EKGEIA-KAGNYLSKVDGKRILLEASTTSLMLSL 835



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 136/319 (42%), Gaps = 6/319 (1%)

Query: 76  GIIPTPDLVHEVLQ--LSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G+IP   + +  L     +     A + F     +G +    ++  ++      G F  M
Sbjct: 365 GLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADM 424

Query: 133 WNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
                 MK +G+ +    F  +  +Y   G  D+A++ F  M   GV  DVV  ++++SA
Sbjct: 425 IGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISA 484

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
             R    T    +F   V + + P+   +  +++G+   G + +A +   EM+ +    P
Sbjct: 485 FSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRP 544

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V  + + + +L +  +V +A     ++      P +  F++ +D    +     A ++
Sbjct: 545 DIVF-FNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKI 603

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
            D M V  G   D +TY+ + +   KN R+++    F EM +   +P  +     +  L 
Sbjct: 604 LDAMEVV-GVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLF 662

Query: 372 DADEPEIAIEIWNYILENG 390
            A     A + ++ ++E+G
Sbjct: 663 RAGRTVAARKKFHEMIESG 681



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 134/323 (41%), Gaps = 20/323 (6%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++++++  L  N   ++  +  ++M ++G    P    + ++   +   G+  +A   F
Sbjct: 229 FSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLF 288

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             M+  GV+ DVV  N ++ A+C+        L           PD  ++  ++ G+   
Sbjct: 289 HEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATL 348

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G ++EA K F +M  R    P  V+   +FL +L +  +  EA +    M  +   P + 
Sbjct: 349 GRLKEAAKMFRKMKSR-GLIPNIVIC-NSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIV 406

Query: 291 FFSNALDILVKLNDSTHAVQLW--DIMMVF-----HGAFPDSLTYNMIFECLIKNKRVHE 343
            +   L          +A + W  D++ +F     +G   D   +N++     K   V +
Sbjct: 407 SYCTLLH--------GYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDD 458

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
               F EM +    P  +  +T I+          A+E +N ++  GI P  A  + ++ 
Sbjct: 459 AMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQ 518

Query: 404 GLRNLGRLSDVRRFAEEMLNRRI 426
           G    G L   +    EM+N+ I
Sbjct: 519 GFCMHGGLVKAKELVSEMINKGI 541



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 119/272 (43%), Gaps = 4/272 (1%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L++ T++ + D  C A + D  ++ F  +   G++   +  ++LL  +C   N+T  A+ 
Sbjct: 155 LTVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLC-YANRTEEAVN 213

Query: 205 -FLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
             L+R+ ++   P+  S++I+L+G       + A   F  M +       +V+AY T + 
Sbjct: 214 VLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIH 273

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
              +  +  +A      M  +   P +  ++  +D L K      A +L    M  +GA 
Sbjct: 274 GFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKA-ELVLRQMTTNGAQ 332

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           PD++TYN +        R+ E  K F +M      P  + C + +  L      + A EI
Sbjct: 333 PDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEI 392

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDV 414
           ++ +   G  P   S   LL G  + G  +D+
Sbjct: 393 FDSMTAKGHKPDIVSYCTLLHGYASEGWFADM 424


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 154/369 (41%), Gaps = 41/369 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +N ++  L K    ++    +  M ++GV+ +  T+ SI   YC +G+  E
Sbjct: 228 RGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE 287

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     M   GVE DVV  NSL+  +C+    T     F +  K+ + P+  ++  LL+
Sbjct: 288 AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    +  +VD+A+     M+ +  
Sbjct: 348 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 286 FPTLKFFSNALDILVK-------------------------LNDSTHAVQLWD------- 313
            P    +   + IL K                          N   H++ ++D       
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKE 465

Query: 314 --IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
             + M+  G   D++ +N I +   K  RV E EK F  M++   +P  +  +T I    
Sbjct: 466 LILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYC 525

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRIL 427
            A + + A ++   ++  G+ P   + N L+ G   + R+ D      EM    ++  I+
Sbjct: 526 LAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585

Query: 428 IYEVTMHKL 436
            Y + +  L
Sbjct: 586 TYNIILQGL 594



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/413 (20%), Positives = 158/413 (38%), Gaps = 89/413 (21%)

Query: 107 RGQRLSPYAWNLMVDVLGKNG------RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           RG+  S Y  N  +  + ++       R+ +M    R   ++   +L T+  +  S C A
Sbjct: 48  RGRGASIYGLNCALADVARHSPAAAVSRYNRM---ARAGADEVTPNLCTYGILIGSCCCA 104

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR-------------------------- 194
           G+ D    +   +   G   D +A   LL  +C                           
Sbjct: 105 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFS 164

Query: 195 ---------QENQTSRALEFLNRV---KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
                     EN++  ALE L  +        PD  S+  ++ G+ KEG++++A  T+ E
Sbjct: 165 YNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHE 224

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M++R      +V+ Y + +  L + + +D+A++ L  M      P  + +++ +      
Sbjct: 225 MLDRGIL--PNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                A+     M    G  PD +TYN + + L KN R  E  K F  M K   +P    
Sbjct: 283 GQPKEAIGFLKKMHS-DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT 341

Query: 363 CATAIT------------MLLD---------------------ADEPEI--AIEIWNYIL 387
             T +              LLD                     A + ++  A+ +++ + 
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMR 401

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKL 436
           + G+ P   +   ++  L   GR+ D  R+ E+M++ R+    ++Y   +H L
Sbjct: 402 QQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL 454



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/349 (19%), Positives = 148/349 (42%), Gaps = 10/349 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N+++  L    R ++    +++M +DG    P   ++ ++ + +   G  D+A  ++
Sbjct: 163 FSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTY 222

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  +VV  NS+++A+C+ +    +A+E L   VK  V P+  ++  ++ G+  
Sbjct: 223 HEMLDRGILPNVVTYNSIIAALCKAQ-AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCS 281

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G  +EA     +M    +     V+ Y + +  L +  +  EA K    M      P +
Sbjct: 282 SGQPKEAIGFLKKM--HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEI 339

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             +   L              L D +MV +G  P+   ++++     K  +V +    F 
Sbjct: 340 TTYGTLLQGYATKGALVEMHGLLD-LMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFS 398

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           +M +    P  +   T I +L  +   E A+  +  +++  + P     N L+  L    
Sbjct: 399 KMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFD 458

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD--IFDSLER 456
           +    +    EML+R I +  +  + +  +   E R +    +FD + R
Sbjct: 459 KWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVR 507



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 136/319 (42%), Gaps = 13/319 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG  L    +N ++D   K GR  +      +M   GV  ++ T++++ D YC AGK DE
Sbjct: 473 RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDE 532

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A      M   G++ D V  N+L++  C+        + F       V PD  ++ I+L+
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  +      A + +  + E        +  Y   L  L +    DEAL+  + +    C
Sbjct: 593 GLFQTRRTAAAKELYVGITE--SGTQLELSTYNIILHGLCKNNLTDEALRMFQNL----C 646

Query: 286 FPTLKFFSNALDI----LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
              L+  +   +I    L+K+  +  A  L+  +   +G  PD  TY+++ E LI+   +
Sbjct: 647 LTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA-NGLVPDVRTYSLMAENLIEQGLL 705

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E++  F  M +N          + +  LL   +   A   + ++++     LEAS   L
Sbjct: 706 EELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA-GTYLFMIDEKHFSLEASTASL 764

Query: 402 LVGLRNLGRLSDVRRFAEE 420
            + L + G+  +  RF  E
Sbjct: 765 FLDLLSGGKYQEYHRFLPE 783



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 133/295 (45%), Gaps = 16/295 (5%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLP--TFASIFDSYCGA 160
           R Q L+P    +  ++ +L K+GR E   +A+R  ++  D  LS     + S+  S C  
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVE---DAMRYFEQMIDERLSPGNIVYNSLIHSLCIF 457

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGD 218
            K+D+A      M   G+  D +  NS++ + C++    ++ +  + + R+   V P+  
Sbjct: 458 DKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG--VKPNII 515

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +++ L++G+   G ++EA K    MV      P+ V  Y T +    +  ++++AL   R
Sbjct: 516 TYSTLIDGYCLAGKMDEATKLLASMVS-VGMKPDCV-TYNTLINGYCKISRMEDALVLFR 573

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M+     P +  ++  L  L +   +  A +L+ + +   G   +  TYN+I   L KN
Sbjct: 574 EMESSGVSPDIITYNIILQGLFQTRRTAAAKELY-VGITESGTQLELSTYNIILHGLCKN 632

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
               E  + F  +   + Q         I  LL     + A +++  +  NG++P
Sbjct: 633 NLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 6/247 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +R+SP    +N ++  L K    ++    +  M + GV+    T+ SI   +C +G+  E
Sbjct: 41  KRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKE 100

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A++    M   GVE DVV  NSL+  +C+    T     F +  K+ + PD  ++  LL+
Sbjct: 101 AIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQ 160

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    + ++V+EA+     M+ +  
Sbjct: 161 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILVCAYAKQEKVEEAMLVFSKMRQQGL 218

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    +   +D+L K      A+  ++  M+  G  PDS+ YN +   L    +  + E
Sbjct: 219 NPNAVTYGTVIDVLCKSGRVEDAMLYFE-QMIDEGLRPDSIVYNSLIHSLCIFDKWEKAE 277

Query: 346 KFFHEMI 352
           + F EM+
Sbjct: 278 ELFLEML 284



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 9/182 (4%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  S++ ++ G+ KEG++++   T+ EM+++   +P +V+ Y + +  L + + VD+A+
Sbjct: 10  PDVVSYSTVINGFFKEGDLDKTYSTYNEMLDK-RISP-NVVTYNSIIAALCKAQTVDKAM 67

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           + L  M      P    +++ +           A+     M    G  PD +TYN + + 
Sbjct: 68  EVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRS-DGVEPDVVTYNSLMDY 126

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE---IWNYILENGI 391
           L KN R  E  K F  M K   +P   +  T  T+L         +E   + + ++ NGI
Sbjct: 127 LCKNGRCTEARKIFDSMTKRGLKP---DITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 183

Query: 392 LP 393
            P
Sbjct: 184 HP 185



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/306 (19%), Positives = 127/306 (41%), Gaps = 47/306 (15%)

Query: 139 MKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           M +DG    P   +++++ + +   G  D+   +++ M    +  +VV  NS+++A+C+ 
Sbjct: 1   MADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKA 60

Query: 196 ENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
           +    +A+E L   VK  V PD  ++  ++ G+   G                       
Sbjct: 61  QT-VDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSG----------------------- 96

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
                         Q  EA+ FL+ M+ +   P +  +++ +D L K    T A +++D 
Sbjct: 97  --------------QPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFD- 141

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
            M   G  PD  TY  + +       + E+      M++N   P     +  +      +
Sbjct: 142 SMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQE 201

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYE 430
           + E A+ +++ + + G+ P   +   ++  L   GR+ D   + E+M++  +    ++Y 
Sbjct: 202 KVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYN 261

Query: 431 VTMHKL 436
             +H L
Sbjct: 262 SLIHSL 267


>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
          Length = 1161

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 176/417 (42%), Gaps = 18/417 (4%)

Query: 40  FPTHLDAPYISSSARI--ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY----- 92
           F   +D   I+ SA I  +C +     + +I S +  +GI+P  D+++  L   Y     
Sbjct: 462 FEDGIDPDVITYSALINGMCRMAKMHETKEILSRMQKSGILPN-DVLYTTLICYYCKAGY 520

Query: 93  --DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPT 149
             ++    VD +R   RG   +P   N ++    + G   +  +  + M    +     +
Sbjct: 521 VKEALKHFVDIYR---RGLVANPVIHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVS 577

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  I DSYC  G    A   +D M  +G   +V    +LL  +C Q     +A +F++ +
Sbjct: 578 FNRIIDSYCHRGNIVGAFSVYDDMVRYGYSPNVCTYQNLLRGLC-QGGHLVQARQFMSCL 636

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             I    D  +F  LL G  + G ++EA     +M++       H   Y   L    R  
Sbjct: 637 LDIPFAIDEKTFNALLLGICRYGTLDEALDLCEKMIKNNCLPDIH--TYTILLSGFCRKG 694

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           ++  AL  L++M  +   P    ++  L+ L+       A  ++  ++   G + D + Y
Sbjct: 695 KILPALVILQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAY 754

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N +    +K++ V+ +++   +M +NE  P   +    +   +   +   ++ ++ Y++ 
Sbjct: 755 NSLMNGYLKSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVR 814

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            GI P   +   L++GL   G +    +F E+M+   I    +    L  AF  +S+
Sbjct: 815 KGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSK 871



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/334 (20%), Positives = 142/334 (42%), Gaps = 5/334 (1%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF-D 171
            + + +++    + G+       +++M E GV+     +  + +     G+   A   F +
Sbjct: 681  HTYTILLSGFCRKGKILPALVILQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHE 740

Query: 172  VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            ++   G+  D +A NSL++   +  N  +      +  +  V P+  S+ IL+ G+ K G
Sbjct: 741  IICKEGLYADCIAYNSLMNGYLKSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRG 800

Query: 232  NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
               ++   +  MV R    P++V  Y   ++ L     +D A+KFL  M  E  FP    
Sbjct: 801  QFSKSLYLYKYMV-RKGIRPDNV-TYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLV 858

Query: 292  FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
            F   +    + +   +A+Q+++ M   H + P S T++ +   LI+   +    K  HEM
Sbjct: 859  FDILITAFSEKSKMHNALQVFNCMKWLHMS-PSSKTFSAMINGLIRKGYLDHSHKVLHEM 917

Query: 352  IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
            ++   QP   +    +       E + A  +   +   GI+P E + + ++ GL   G+L
Sbjct: 918  LQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKL 977

Query: 412  SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             +       M+   ++    T   L  +   ES+
Sbjct: 978  EEAVIVFSSMMRSGMVPTVATFTTLMHSLCKESK 1011



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 145/335 (43%), Gaps = 5/335 (1%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
           L     N++++ L  NG F +  + ++ MK   + +  T+ +I   Y   G++  A+   
Sbjct: 224 LGVTTCNILLNSLCTNGEFRKAEDMLQKMKSCHISNSVTYNTILHWYVKKGRFKAALCVL 283

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEK 229
           + M    V+ DV   N ++  +CR +  T RA   L R++K  + PD  ++  L+ G+ +
Sbjct: 284 EDMERDSVQADVYTYNIMIDKLCRIKRST-RAFLLLKRMRKDDLTPDECTYNTLINGFFR 342

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           EG +  A   F  M+ R    P  V  Y T +    R +++D+AL  L  M+     P+ 
Sbjct: 343 EGKINHARYVFNHML-RQNLVPS-VATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSE 400

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             +S  L+   K++    A+ L + +    G   +     ++ +   +   + + ++   
Sbjct: 401 LTYSALLNGYCKVSMLGPAIYLMEDLKS-RGITINKTMRTILIDGFCQVGEISKAKQILK 459

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
            M ++   P  +  +  I  +    +     EI + + ++GILP +     L+      G
Sbjct: 460 SMFEDGIDPDVITYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAG 519

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            + +  +   ++  R ++   V  + L  AFY E 
Sbjct: 520 YVKEALKHFVDIYRRGLVANPVIHNALLHAFYREG 554



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 134/350 (38%), Gaps = 43/350 (12%)

Query: 139 MKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           +K  G+    T  +I  D +C  G+  +A      M   G++ DV+  ++L++ +CR   
Sbjct: 426 LKSRGITINKTMRTILIDGFCQVGEISKAKQILKSMFEDGIDPDVITYSALINGMCRMA- 484

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVL 255
           +     E L+R++K  + P+   +  L+  + K G V+EA K F ++  R    NP   +
Sbjct: 485 KMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALKHFVDIYRRGLVANP---V 541

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            +   L    R   + EA  F + M   N       F+  +D      +   A  ++D M
Sbjct: 542 IHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFNRIIDSYCHRGNIVGAFSVYDDM 601

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF--------------------------- 348
            V +G  P+  TY  +   L +   + +  +F                            
Sbjct: 602 -VRYGYSPNVCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNALLLGICRYGT 660

Query: 349 --------HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
                    +MIKN   P        ++      +   A+ I   +LE G++P   +   
Sbjct: 661 LDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQMMLEKGVVPDTVAYTC 720

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 450
           LL GL N G++        E++ +  L  +   +      Y +SR++  I
Sbjct: 721 LLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSRNVNTI 770


>gi|413921612|gb|AFW61544.1| hypothetical protein ZEAMMB73_526638 [Zea mays]
          Length = 456

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 116/267 (43%), Gaps = 6/267 (2%)

Query: 129 FEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           F  +W+    M+  G+ LS  TF+++  SY  +   D+AV  F+ +   G  Q     N+
Sbjct: 125 FPHLWSLASDMRGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNA 184

Query: 188 LLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           LL A+C   N T  A + L R+ +K V PD  +F+ L++ W   G ++EA     +M  R
Sbjct: 185 LLDALCANGNFTG-AYKLLRRMARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGR 243

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P  V   +  +  L+R   +++A  F   M  E   P +  F++  + L    D  
Sbjct: 244 GLRPP--VRGRDLLVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDVD 301

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            AV L        G  PD  TY ++   + K  ++ E  + F+  +++  +P P   A  
Sbjct: 302 FAVSLLADASS-RGLCPDISTYKVMLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLYAAI 360

Query: 367 ITMLLDADEPEIAIEIWNYILENGILP 393
           I  L  A     A   +  +   G  P
Sbjct: 361 IKALCKAGRFADAFAFFGDMKTKGHPP 387


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 138/332 (41%), Gaps = 7/332 (2%)

Query: 96  SSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           + A+DFF      G     + ++ ++      GR  +  +  + M E  V+ +  TF  +
Sbjct: 97  TEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTIL 156

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKI 212
            D  C      EA + F+ M+  G+E DV   N+L+   C + +Q   A +  N + +K 
Sbjct: 157 IDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSR-SQMDEAQKLFNIMDRKG 215

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             P+  S+ IL+ G  K G ++EA     EM  +    P+ +  Y T +    +  +  E
Sbjct: 216 CAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHK-SLTPD-IFTYSTLMRGFCQVGRPQE 273

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A + L+ M      P L  +S  LD L K      A +L   M       P+   Y ++ 
Sbjct: 274 AQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQE-SKIEPNIFIYTILI 332

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
           E +    ++    + F  +     QPT +     I+ LL       A E++  +  NG L
Sbjct: 333 EGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCL 392

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           P   + N ++ G    G   +  R  EEM+ +
Sbjct: 393 PNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGK 424



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 139/311 (44%), Gaps = 11/311 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+++I +  C  G    A+     M   G + +VVA N+++ ++C+ +   + A++F + 
Sbjct: 47  TYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCK-DRLVTEAMDFFSE 105

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            VK+ + PD  +++ +L G+   G V EA   F +MVER    P  V  +   +  L + 
Sbjct: 106 MVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVER-NVIPNKV-TFTILIDGLCKK 163

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           + + EA      M  +   P +  ++  +D     +    A +L++I M   G  P+  +
Sbjct: 164 RMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNI-MDRKGCAPNVRS 222

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN++     K+ R+ E +    EM      P     +T +        P+ A E+   + 
Sbjct: 223 YNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMC 282

Query: 388 ENGILPLEASANELLVGLRNLGRLSD----VRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
             G+LP   + + +L GL   G L +    ++   E  +   I IY + +  +    + +
Sbjct: 283 SYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGM--CTFGK 340

Query: 444 SRSMRDIFDSL 454
             + R++F +L
Sbjct: 341 LEAARELFSNL 351



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 113/269 (42%), Gaps = 3/269 (1%)

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
           G++  +V  N+LLS +C +         F   VK   +PD  +++ ++ G  K GN   A
Sbjct: 5   GLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMA 64

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            +   +M E+      +V+AY T + +L + + V EA+ F   M  E   P +  +S+ L
Sbjct: 65  LQLLKKMEEK--GCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSIL 122

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
                L     A  L+   MV     P+ +T+ ++ + L K + + E    F  M +   
Sbjct: 123 HGFCNLGRVNEATSLFK-QMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGL 181

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
           +P        +       + + A +++N +   G  P   S N L+ G    GR+ + + 
Sbjct: 182 EPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKG 241

Query: 417 FAEEMLNRRILIYEVTMHKLKKAFYNESR 445
              EM ++ +     T   L + F    R
Sbjct: 242 LLAEMSHKSLTPDIFTYSTLMRGFCQVGR 270



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 134/337 (39%), Gaps = 11/337 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++ +++ L K G        ++ M+E G   ++  + +I DS C      EA+  F  M
Sbjct: 47  TYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEM 106

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  DV   +S+L   C           F   V++ V P+  +F IL++G  K+  +
Sbjct: 107 VKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMI 166

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA   F  M E+    P+ V  Y   +       Q+DEA K   +M  + C P ++ ++
Sbjct: 167 SEAWLVFETMTEK-GLEPD-VYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYN 224

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAF-PDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
             ++   K      A  L   M   H +  PD  TY+ +     +  R  E ++   EM 
Sbjct: 225 ILINGHCKSGRIDEAKGLLAEMS--HKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMC 282

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P  +  +  +  L      + A E+   + E+ I P       L+ G+   G+L 
Sbjct: 283 SYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLE 342

Query: 413 DVRRFAEEMLNRRI----LIYEVTMHK-LKKAFYNES 444
             R     +  + I    + Y V +   LK    NE+
Sbjct: 343 AARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEA 379


>gi|449464322|ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Cucumis sativus]
          Length = 760

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 157/329 (47%), Gaps = 22/329 (6%)

Query: 37  RPRFPTHLDAPYISSSARIICEILAHAS-SDDIESALACTGIIPTPD--LVHEVLQLSYD 93
           RPR P  L+        +IIC+++A+   +  +++++    ++P  D  LV+ VL  +  
Sbjct: 84  RPRDPEKLE--------KIICKMMANREWTTRLQNSI--RSLVPQFDHNLVYNVLHAAKK 133

Query: 94  SPSSAVDFFRW---AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           S   A++FFRW   AG  Q      + + +++LG+  +       +  M   GV      
Sbjct: 134 S-EHALNFFRWVERAGLFQHDRETHFKI-IEILGRASKLNHARCILLDMPNKGVQWDEDL 191

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  + +SY  AG   EAV  F  M   GVE+ V + ++L   I R+         F   +
Sbjct: 192 FVVLIESYGKAGIVQEAVKIFQKMKELGVERSVKSYDALFKEIMRRGRYMMAKRYFNAML 251

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + ++P   ++ ++L G+     +E A + + +M  R   +P+ V+ Y T +    R K 
Sbjct: 252 NEGIEPIRHTYNVMLWGFFLSLRLETAKRFYEDMKSR-GISPD-VVTYNTMINGYCRFKM 309

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           ++EA +F   MKG+N  PT+  ++  +   V ++ +  A++L++ M    G  P+ +TY+
Sbjct: 310 MEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRLFEEMKA-AGEKPNDITYS 368

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
            +   L   +++ E  K   EM+   + P
Sbjct: 369 TLLPGLCDAEKLPEARKILTEMVTRHFAP 397



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 13/225 (5%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+   K V  D D F +L+E + K G V+EA K F +M    VER       V +Y+  
Sbjct: 177 LLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKELGVER------SVKSYDAL 230

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL-DILVKLNDSTHAVQLWDIMMVFH 319
              ++R  +   A ++   M  E   P    ++  L    + L   T A + ++ M    
Sbjct: 231 FKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLET-AKRFYEDMKS-R 288

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
           G  PD +TYN +     + K + E E+FF EM      PT ++  T I   +     + A
Sbjct: 289 GISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDA 348

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           + ++  +   G  P + + + LL GL +  +L + R+   EM+ R
Sbjct: 349 LRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTR 393


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 140/303 (46%), Gaps = 8/303 (2%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKY 163
           R +  SP    +N+M+  L   G+ +     + +++ ++   ++ T+  + ++    G  
Sbjct: 181 RSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGV 240

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           DEA+   D M   G++ D+   N+++  +C+ E    RA E +  ++ K  +PD  S+ I
Sbjct: 241 DEALKLLDEMLSRGLKPDMFTYNTIIRGMCK-EGMVDRAFEMIRNLELKGCEPDVISYNI 299

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL     +G  EE  K   +M    + +P +V+ Y   + TL R  +++EA+  L++MK 
Sbjct: 300 LLRALLNQGKWEEGEKLMTKMFSE-KCDP-NVVTYSILITTLCRDGKIEEAMNLLKLMKE 357

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +   P    +   +    +      A++  +  M+  G  PD + YN +   L KN +  
Sbjct: 358 KGLTPDAYSYDPLIAAFCREGRLDVAIEFLET-MISDGCLPDIVNYNTVLATLCKNGKAD 416

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +  + F ++ +    P   +  T  + L  + +   A+ +   ++ NGI P E + N ++
Sbjct: 417 QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMI 476

Query: 403 VGL 405
             L
Sbjct: 477 SCL 479



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 150/336 (44%), Gaps = 7/336 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG +   + +N ++  + K G  ++ +  +R ++  G    + ++  +  +    GK++E
Sbjct: 253 RGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEE 312

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
                  M     + +VV  + L++ +CR + +   A+  L  +K K + PD  S+  L+
Sbjct: 313 GEKLMTKMFSEKCDPNVVTYSILITTLCR-DGKIEEAMNLLKLMKEKGLTPDAYSYDPLI 371

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
             + +EG ++ A +    M+   +     ++ Y T L TL +  + D+AL+    +    
Sbjct: 372 AAFCREGRLDVAIEFLETMIS--DGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 429

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C P    ++     L    D   A+ +  + MV +G  PD +TYN +  CL +   V + 
Sbjct: 430 CSPNSSSYNTMFSALWSSGDKIRALHMI-LEMVSNGIDPDEITYNSMISCLCREGMVDKA 488

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            +   +M   E+ P+ +     +     A   E AI++ + ++ NG  P E +   L+ G
Sbjct: 489 FELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEG 548

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           +   G  ++    A +++ R   I E +  +L + F
Sbjct: 549 IGFAGYRAEAMELANDLV-RINAISEYSFKRLHRTF 583



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 123/305 (40%), Gaps = 37/305 (12%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           IF   C +G Y E++   + M   G   DV+    L+       N   +A+  +  ++K 
Sbjct: 91  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRN-VPKAVRVMEILEKF 149

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PD  ++  L+ G+ K   +++A +    M  + +++P+ V  Y   + +L    ++D 
Sbjct: 150 GQPDVFAYNALINGFCKMNRIDDATRVLDRMRSK-DFSPDTV-TYNIMIGSLCSRGKLDL 207

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV--------------- 317
           ALK L  +  +NC PT+  ++  ++  +       A++L D M+                
Sbjct: 208 ALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIR 267

Query: 318 -------------------FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
                                G  PD ++YN++   L+   +  E EK   +M   +  P
Sbjct: 268 GMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDP 327

Query: 359 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 418
             +  +  IT L    + E A+ +   + E G+ P   S + L+      GRL     F 
Sbjct: 328 NVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFL 387

Query: 419 EEMLN 423
           E M++
Sbjct: 388 ETMIS 392



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 137/347 (39%), Gaps = 39/347 (11%)

Query: 135 AVRVMK---EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           AVRVM+   + G   +  + ++ + +C   + D+A    D M       D V  N ++ +
Sbjct: 139 AVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGS 198

Query: 192 ICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER---- 246
           +C +  +   AL+ L++ +     P   ++ IL+E    EG V+EA K   EM+ R    
Sbjct: 199 LCSR-GKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKP 257

Query: 247 --FEWNP---------------------------EHVLAYETFLITLIRGKQVDEALKFL 277
             F +N                              V++Y   L  L+   + +E  K +
Sbjct: 258 DMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLM 317

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M  E C P +  +S  +  L +      A+ L  +M    G  PD+ +Y+ +     +
Sbjct: 318 TKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE-KGLTPDAYSYDPLIAAFCR 376

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             R+    +F   MI +   P  +N  T +  L    + + A+EI+  + E G  P  +S
Sbjct: 377 EGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSS 436

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            N +   L + G          EM++  I   E+T + +      E 
Sbjct: 437 YNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREG 483


>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g54980, mitochondrial; Flags: Precursor
 gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
 gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
 gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 851

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 142/303 (46%), Gaps = 9/303 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +  +++ L K G+  +    +  M E+  L  S  ++ SI D +   G+ D AV +++ M
Sbjct: 551 YQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEM 610

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
             +G+  +V+   SL++ +C+  N+  +ALE  + +K K V  D  ++  L++G+ K  N
Sbjct: 611 CGNGISPNVITYTSLMNGLCKN-NRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSN 669

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +E A+  F E++E    NP   + Y + +        +  AL   + M  +     L  +
Sbjct: 670 MESASALFSELLEE-GLNPSQPI-YNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTY 727

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +D L+K  +   A +L+  M    G  PD + Y +I   L K  +  +V K F EM 
Sbjct: 728 TTLIDGLLKDGNLILASELYTEMQAV-GLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMK 786

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           KN   P  L     I         + A  + + +L+ GILP  A+ + L+ G   +G L 
Sbjct: 787 KNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSG--QVGNLQ 844

Query: 413 DVR 415
            VR
Sbjct: 845 PVR 847



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 166/386 (43%), Gaps = 37/386 (9%)

Query: 59  ILAHASSDDIESALACTGII----PTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQR---- 110
           I  H  ++D+ SAL     +    P+P+ V         + S  +++FR  G  ++    
Sbjct: 346 ITGHCKNNDLVSALVLFDKMEKEGPSPNSV---------TFSVLIEWFRKNGEMEKALEF 396

Query: 111 --------LSPYAWNLMVDVLG--KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
                   L+P  +++   + G  K  + E+         E G+ ++    +I    C  
Sbjct: 397 YKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFVCNTILSWLCKQ 456

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           GK DEA      M   G+  +VV+ N+++   CRQ+N     + F N ++K + P+  ++
Sbjct: 457 GKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTY 516

Query: 221 AILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +IL++G  +  + + A +    M     E N    + Y+T +  L +  Q  +A + L  
Sbjct: 517 SILIDGCFRNHDEQNALEVVNHMTSSNIEVNG---VVYQTIINGLCKVGQTSKARELLAN 573

Query: 280 MKGEN--CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
           M  E   C   + + S  +D   K  +   AV  ++  M  +G  P+ +TY  +   L K
Sbjct: 574 MIEEKRLCVSCMSYNS-IIDGFFKEGEMDSAVAAYE-EMCGNGISPNVITYTSLMNGLCK 631

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATA-ITMLLDADEPEIAIEIWNYILENGILPLEA 396
           N R+ +  +   EM KN+     +    A I         E A  +++ +LE G+ P + 
Sbjct: 632 NNRMDQALEMRDEM-KNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQP 690

Query: 397 SANELLVGLRNLGRLSDVRRFAEEML 422
             N L+ G RNLG +       ++ML
Sbjct: 691 IYNSLISGFRNLGNMVAALDLYKKML 716



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 174/408 (42%), Gaps = 18/408 (4%)

Query: 47  PYISSSARIICEILAHASSDDIESALACTGI----IPTPDLVHEVLQLSYDSPSSAVDFF 102
           PY++ +   + +  +   + ++ S +   G+    + T  L+   L+   + P+ A++  
Sbjct: 199 PYVNRTLSALVQRNSLTEAKELYSRMVAIGVDGDNVTTQLLMRASLR--EEKPAEALEVL 256

Query: 103 -RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCG 159
            R   RG       ++L V    K        + +R MKE    V S  T+ S+  +   
Sbjct: 257 SRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVK 316

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G  D+A+   D M   G+  +VVA  SL++  C+  +  S  + F    K+   P+  +
Sbjct: 317 QGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVT 376

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F++L+E + K G +E+A + + +M E     P  V    T +   ++G++ +EALK    
Sbjct: 377 FSVLIEWFRKNGEMEKALEFYKKM-EVLGLTPS-VFHVHTIIQGWLKGQKHEEALKLFD- 433

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN--MIFECLIK 337
              E     +   +  L  L K   +  A +L    M   G  P+ ++YN  M+  C  K
Sbjct: 434 ESFETGLANVFVCNTILSWLCKQGKTDEATELLS-KMESRGIGPNVVSYNNVMLGHCRQK 492

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
           N  +  +   F  +++   +P     +  I       + + A+E+ N++  + I      
Sbjct: 493 NMDLARI--VFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVV 550

Query: 398 ANELLVGLRNLGRLSDVRRFAEEML-NRRILIYEVTMHKLKKAFYNES 444
              ++ GL  +G+ S  R     M+  +R+ +  ++ + +   F+ E 
Sbjct: 551 YQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEG 598



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 117/267 (43%), Gaps = 10/267 (3%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIVDPDGDSFAILLEGWEKE 230
           M+   +E + V   ++++ +C+   QTS+A E L  +  +K +     S+  +++G+ KE
Sbjct: 539 MTSSNIEVNGVVYQTIINGLCKV-GQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKE 597

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G ++ A   + EM      +P +V+ Y + +  L +  ++D+AL+    MK +     + 
Sbjct: 598 GEMDSAVAAYEEMCGN-GISP-NVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIP 655

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +   +D   K ++   A  L+  ++   G  P    YN +         +      + +
Sbjct: 656 AYGALIDGFCKRSNMESASALFSELLE-EGLNPSQPIYNSLISGFRNLGNMVAALDLYKK 714

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M+K+  +       T I  LL      +A E++  +   G++P E     ++ GL   G+
Sbjct: 715 MLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQ 774

Query: 411 LSDVRRFAEEM----LNRRILIYEVTM 433
              V +  EEM    +   +LIY   +
Sbjct: 775 FVKVVKMFEEMKKNNVTPNVLIYNAVI 801


>gi|147865347|emb|CAN84084.1| hypothetical protein VITISV_018999 [Vitis vinifera]
          Length = 561

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 171/412 (41%), Gaps = 14/412 (3%)

Query: 16  IIPSSSSTTTSP--TSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALA 73
           ++P   +T+ S   T ++P    + R      +P        I  +   A+   IE AL 
Sbjct: 68  LLPICCNTSISKPFTENSPKEQLKTRAVDGFLSPGEKLRGVFIQRLRGKAA---IELALT 124

Query: 74  CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY---AWNLMVDVLGKNGRFE 130
             GI  T D+V EV         + V FF WA + Q   P     +N+++  LG+    E
Sbjct: 125 NVGIDLTIDIVSEVXNRGNLGGEAMVXFFNWAVK-QPTIPKDVDTYNVIIKALGRRKFIE 183

Query: 131 QMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
                ++ M   G+  +  T + + DS+  A +  +A+  F  +   G + D  ++N LL
Sbjct: 184 FXVXVLKDMHIQGISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTESLNVLL 243

Query: 190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
             +C Q +    A  F N +K  +  +  ++ I++ GW K G + E  +    MV    +
Sbjct: 244 QCLC-QRSHVGAANLFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMVAD-GF 301

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
           +P + L +   +  L R  ++D+A++    M+   C P    ++  +   +   D    +
Sbjct: 302 SP-NCLTFSHLIEGLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRDFDECL 360

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           + ++  MV     P+  TY  +    +K ++V +  +   EM+     PT     + I  
Sbjct: 361 KYYNF-MVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITSFIEP 419

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           L     P  A+ I+    + G     ++   LL+ L   G+   +    +EM
Sbjct: 420 LCQYGPPHAAMMIYKKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWDEM 471



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 51/258 (19%), Positives = 108/258 (41%), Gaps = 20/258 (7%)

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-----IVDPDGDSFAILLEGWEKEGN 232
           + +DV   N ++ A+ R+     + +EF   V K      + P+ ++ +I+++ + K   
Sbjct: 162 IPKDVDTYNVIIKALGRR-----KFIEFXVXVLKDMHIQGISPNYETLSIVMDSFIKARQ 216

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE---NCFPTL 289
           V +A + F  + E F    +   +    L  L +   V  A  F   MKG    NC  T 
Sbjct: 217 VSKAIEMFRNL-EEFGGKCD-TESLNVLLQCLCQRSHVGAANLFFNAMKGGIPFNCM-TY 273

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
                      K+ +    ++     MV  G  P+ LT++ + E L +  R+ +  + FH
Sbjct: 274 NIIIGGWSKYGKIGEMERCLK----AMVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFH 329

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
            M +    P        I+  +   + +  ++ +N+++ +   P   +  +L+V      
Sbjct: 330 HMEETGCVPNACVYNALISNFISTRDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKAR 389

Query: 410 RLSDVRRFAEEMLNRRIL 427
           +++D     +EM+ R ++
Sbjct: 390 KVADALEMLDEMVGRGMI 407


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 136/290 (46%), Gaps = 4/290 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           R   RG + +   + ++V+ L K G  +   N +  M+   +   +  F +I DS C   
Sbjct: 177 RMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYR 236

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D+A+  F  M   G+  +VV  +SL+S +C     +  +    + ++K ++P+  +F 
Sbjct: 237 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFN 296

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++ + KEG   EA K + +M++R   +P+ +  Y + +       ++D+A +    M 
Sbjct: 297 ALIDAFVKEGKFVEAEKLYDDMIKR-SIDPD-IFTYNSLVNGFCMHDRLDKAKQMFEFMV 354

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            ++CFP +  ++  +    K        +L+   M   G   D++TY  + + L  +   
Sbjct: 355 SKDCFPDVVTYNTLIKGFCKSKRVEDGTELFR-EMSHRGLVGDTVTYTTLIQGLFHDGDC 413

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
              +K F +M+ +   P  +  +  +  L +  + E A+E+++Y+ ++ I
Sbjct: 414 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 463



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 149/334 (44%), Gaps = 8/334 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++++   +  +       + ++MK     S+ T +S+ + YC   +  +AV   D 
Sbjct: 83  YTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQ 142

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G   D +   +L+  +    N+ S A+  ++R V++   P+  ++ +++ G  K G
Sbjct: 143 MVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 201

Query: 232 NVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           + + A     +M   + E +   V+ + T + +L + + VD+AL   + M+ +   P + 
Sbjct: 202 DTDLALNLLNKMEAAKIEAD---VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVV 258

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +S+ +  L      + A QL   M +     P+ +T+N + +  +K  +  E EK + +
Sbjct: 259 TYSSLISCLCSYGRWSDASQLLSDM-IEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDD 317

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           MIK    P      + +      D  + A +++ +++     P   + N L+ G     R
Sbjct: 318 MIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 377

Query: 411 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           + D      EM +R ++   VT   L +  +++ 
Sbjct: 378 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDG 411



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 141/332 (42%), Gaps = 6/332 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  + K  +F+ + +    M+  + V  L T+  + + +C   +   A+     M 
Sbjct: 50  FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMM 109

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G E  +V ++SLL+  C  + + S A+  ++++ ++   PD  +F  L+ G       
Sbjct: 110 KLGYEPSIVTLSSLLNGYCHGK-RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKA 168

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA      MV+R    P +++ Y   +  L +    D AL  L  M+       +  F+
Sbjct: 169 SEAVALVDRMVQR-GCQP-NLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFN 226

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D L K      A+ L+  M    G  P+ +TY+ +  CL    R  +  +   +MI+
Sbjct: 227 TIIDSLCKYRHVDDALNLFKEMET-KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 285

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
            +  P  +     I   +   +   A ++++ +++  I P   + N L+ G     RL  
Sbjct: 286 KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK 345

Query: 414 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            ++  E M+++      VT + L K F    R
Sbjct: 346 AKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 377



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 127/299 (42%), Gaps = 7/299 (2%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG-DSF 220
           K D+A+  F  M        +V  N LLSAI + + +    +    +++++    G  ++
Sbjct: 27  KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMK-KFDVVISLGEKMQRLEIVHGLYTY 85

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            IL+  + +   +  A    G+M+ +  + P  ++   + L     GK++ +A+  +  M
Sbjct: 86  NILINCFCRRSQISLALALLGKMM-KLGYEPS-IVTLSSLLNGYCHGKRISDAVALVDQM 143

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                 P    F+  +  L   N ++ AV L D  MV  G  P+ +TY ++   L K   
Sbjct: 144 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVD-RMVQRGCQPNLVTYGVVVNGLCKRGD 202

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
                   ++M   + +   +   T I  L      + A+ ++  +   GI P   + + 
Sbjct: 203 TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 262

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 457
           L+  L + GR SD  +   +M+ ++I    VT + L  AF  E +      ++D + +R
Sbjct: 263 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKR 321



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 66/131 (50%), Gaps = 3/131 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +++++D L  NG+ E+       M++  + L +  + ++ +  C AGK D+    F  +
Sbjct: 434 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 493

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLEGWEKEGN 232
           S+ GV+ +VV  N+++S +C +      A   L ++K+    P+  ++  L+    ++G+
Sbjct: 494 SLKGVKPNVVTYNTMISGLCSKR-LLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 552

Query: 233 VEEANKTFGEM 243
              + +   EM
Sbjct: 553 KAASAELIREM 563


>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
          Length = 770

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 182/448 (40%), Gaps = 26/448 (5%)

Query: 22  STTTSPTSHNPHRPTRPRFPTHL------DAPYISSSARIICEILAHASSDDIESALACT 75
           S T +  S +      PR  T L      D   + S+ R+I  +L         +A+A +
Sbjct: 80  SDTHASASRHAEDLLSPRVSTLLLPSLVADGASLPSARRLISRLLFFNPLSVAAAAIADS 139

Query: 76  GIIPTPDLVHEVLQLSYDSP-----SSAVD-FFRWAGRGQRLSPYAWNLMVDVLGKNGRF 129
               T DL+   ++   +SP     S A D F   + RG   S    N++V+ LG  G+ 
Sbjct: 140 DCTATADLL---VRACLNSPAPGSLSCAADAFLELSTRGASPSIKTCNILVEALGCGGQL 196

Query: 130 EQMWNAVRVMKEDGVLS--LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
           +        M++   ++  + T+  +  + C AG+ D A +    +   G++  VV  N 
Sbjct: 197 DLARKVFGEMRDGNAVAPDVYTYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNV 256

Query: 188 LLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           L+ A+CR   +   A +   R V+  + P   +F IL+ G  +     E +    EM E 
Sbjct: 257 LMDALCRS-GRVEEAFQLKGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQEM-EG 314

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
           F   P  V+ Y   +    R     EAL+    M  +    T+  ++     L K  +  
Sbjct: 315 FGITPNEVI-YNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEME 373

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
           HA Q+ D M++       SL  +++   L    R+  V +   EM+    +P        
Sbjct: 374 HAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTAC 433

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           I  L    + E A EIW  +L  G+    A++N L+ GL     + +  +  + M++  +
Sbjct: 434 IQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGV 493

Query: 427 LIYEVTMHKL-----KKAFYNESRSMRD 449
               +T + +     K +   E+  +RD
Sbjct: 494 EFDRITYNIMIQFCCKASKMEEAIQLRD 521



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 145/337 (43%), Gaps = 23/337 (6%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVM------KEDGVLSLPTFASIFDSYCGAGKYDE 165
           S  AW+L        GR + +   +R M        D V++     +     C  GK++E
Sbjct: 396 SVVAWHLR-----GTGRLDVVLRLIREMVARFLKPNDAVMT-----ACIQELCKRGKHEE 445

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   + ++   G+  ++   N+L+  +C+  N           V   V+ D  ++ I+++
Sbjct: 446 AAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQ 505

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K   +EEA +   +M++R  + P+ +  + TFL       +V++ L  L  MK E  
Sbjct: 506 FCCKASKMEEAIQLRDDMIKR-GFKPD-LFTFNTFLRAYCNLGKVEDILHLLDQMKSEGL 563

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P +  +   +D   K  D  H    + I ++ +G  P+++ YN +     +N  + +  
Sbjct: 564 KPDIVTYGTIIDGYCKAKD-VHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAI 622

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW-NYILENGILPLEASANELLV- 403
                M  N  QPTP+   + +  +  A   E A EI+   IL+N  + L      +++ 
Sbjct: 623 GVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKN--IELGVIGYTIIIQ 680

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           G   +G++ +   + +EM  R I   ++T   L  A+
Sbjct: 681 GFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAY 717



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/254 (19%), Positives = 101/254 (39%), Gaps = 41/254 (16%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+M+    K  + E+       M + G    L TF +   +YC  GK ++ +   D M 
Sbjct: 500 YNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMK 559

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN-- 232
             G++ D+V   +++   C+ ++        +  +K  + P+   +  L+ G+ + G+  
Sbjct: 560 SEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSIS 619

Query: 233 ---------------------------------VEEANKTFGEMVERFEWNPE-HVLAYE 258
                                            VEEA + F + + +   N E  V+ Y 
Sbjct: 620 DAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILK---NIELGVIGYT 676

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
             +    +  ++DEA+ + + M   +  P    ++  +    K  +   A +L+D  MV 
Sbjct: 677 IIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFD-EMVS 735

Query: 319 HGAFPDSLTYNMIF 332
            G  PD+++YN + 
Sbjct: 736 SGIVPDTVSYNTLI 749



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 81/405 (20%), Positives = 150/405 (37%), Gaps = 49/405 (12%)

Query: 75  TGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSP--YAWNLMVDVLGKNGRFE 130
           +GI PT  + + VL  +        + F+  GR    RL P    + ++++ L +  RF 
Sbjct: 245 SGIQPTV-VTYNVLMDALCRSGRVEEAFQLKGRMVEGRLRPSIVTFGILINGLARGQRFG 303

Query: 131 QMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
           ++   ++ M+  G+  +   +  +   +C  G   EA+  FD M   G++Q VV  N + 
Sbjct: 304 EVDAVLQEMEGFGITPNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIA 363

Query: 190 SAICRQENQTSRALEFLNR-------------------------------------VKKI 212
            A+C+ E +   A + L+                                      V + 
Sbjct: 364 KALCK-EGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARF 422

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKT-FGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
           + P+       ++   K G  EEA +  F  + +    N   +      +  L +G  + 
Sbjct: 423 LKPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVN---IATSNALIHGLCQGNNMK 479

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           EA K L+ M           ++  +    K +    A+QL D M +  G  PD  T+N  
Sbjct: 480 EATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDM-IKRGFKPDLFTFNTF 538

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
                   +V ++     +M     +P  +   T I     A +   A +    +++NG+
Sbjct: 539 LRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGL 598

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
            P     N L+ G    G +SD     + M +  I    +T + L
Sbjct: 599 RPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSL 643



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 36/172 (20%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT------------------ 149
           G R +   +N ++   G+NG        +  MK +G+   P                   
Sbjct: 597 GLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEA 656

Query: 150 ------------------FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
                             +  I   +C  GK DEAVM F  M    +  + +   +L+ A
Sbjct: 657 KEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYA 716

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
            C+  N+      F   V   + PD  S+  L+ G  +  ++++  ++  EM
Sbjct: 717 YCKCGNKEEAFKLFDEMVSSGIVPDTVSYNTLISGCCEVDSLDKIVESPAEM 768


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 152/353 (43%), Gaps = 46/353 (13%)

Query: 81  PDLV--HEVLQLSYDSPSSAVDFF---RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           PD+V  + ++   +D  SS   F    +  G+G + +   +N++V    K G+ +   N 
Sbjct: 350 PDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNE 409

Query: 136 VRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
           +R M+E G      TF ++ + YC AG+  EA    D MS  G++ + V +N++L  +C 
Sbjct: 410 LRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLC- 468

Query: 195 QENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
            E +   A + L+   K+    D  S+  L+ G+ K+G   EA K + EM E+ E  P  
Sbjct: 469 GERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEK-EIIPS- 526

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           ++ Y T +  L    + D+++                          KLN+         
Sbjct: 527 IITYNTMIGGLCHSGKTDQSID-------------------------KLNE--------- 552

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
             ++  G  PD  TYN I     +  +V +  +F ++M+K  ++P    C   +  L   
Sbjct: 553 --LLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTE 610

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
              + A++++N  +  G      + N ++ GL    R  +      EM  +++
Sbjct: 611 GMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKL 663



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 157/353 (44%), Gaps = 53/353 (15%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N ++DVL K G+  +  + +  MK +G+L +  TF  +   YC  G   EA    D+M
Sbjct: 249 SYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLM 308

Query: 174 SMHGVEQDVVAVNSLLSAICRQ-------------EN---------------------QT 199
           + + V  DV   N L+  +C+              EN                      +
Sbjct: 309 AQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSS 368

Query: 200 SRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
            +  E +++++ K V P+  ++ ++++ + KEG ++ A     +M E   ++P+ V  + 
Sbjct: 369 LKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKM-EESGFSPDCV-TFN 426

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV-------KLNDSTHAVQL 311
           T +    +  ++ EA + +  M  +     LK  S  L+ ++       KL+D+   +  
Sbjct: 427 TLINGYCKAGRLSEAFRMMDEMSRKG----LKMNSVTLNTILHTLCGERKLDDAYKLLS- 481

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
                   G F D ++Y  +     K+ +  E  K + EM + E  P+ +   T I  L 
Sbjct: 482 ---SASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLC 538

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            + + + +I+  N +LE+G++P E + N +++G    G++    +F  +M+ +
Sbjct: 539 HSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKK 591



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/299 (19%), Positives = 121/299 (40%), Gaps = 3/299 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +    C   K  EA+     M       D V+ N++L  +C++          L+ 
Sbjct: 214 TFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDM 273

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
               + P+ ++F IL+ G+ K G ++EA +    M +     P+ V  Y   +  L +  
Sbjct: 274 KNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVL-PD-VWTYNMLIGGLCKDG 331

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           ++DEA +    M+     P +  ++  ++     + S    +L D  M   G  P+++TY
Sbjct: 332 KIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELID-KMEGKGVKPNAVTY 390

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N++ +  +K  ++        +M ++ + P  +   T I     A     A  + + +  
Sbjct: 391 NVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSR 450

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
            G+     + N +L  L    +L D  +       R   + EV+   L   ++ + +S+
Sbjct: 451 KGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSV 509



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 82/175 (46%), Gaps = 7/175 (4%)

Query: 289 LKFFSNALDILVKL----NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           +K  +N  +IL+      N  + A+ L   M  F   FPD+++YN I + L K  +++E 
Sbjct: 208 VKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDF-SCFPDNVSYNTILDVLCKKGKLNEA 266

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
                +M  N   P        ++        + A ++ + + +N +LP   + N L+ G
Sbjct: 267 RDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGG 326

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR--DIFDSLERR 457
           L   G++ +  R  +EM N ++L   VT + L    ++ S S++  ++ D +E +
Sbjct: 327 LCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGK 381


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 117/266 (43%), Gaps = 10/266 (3%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+ T++ + D+ C    Y +AV+  D M   G E D+V  N L++A+C Q      AL+ 
Sbjct: 194 SVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQ-GDVGEALKV 252

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           LN +      PD  ++  +L+        EEA+K   +M    +  P+ V  +   + +L
Sbjct: 253 LNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSN-DCAPDEV-TFNAVITSL 310

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM---MVFHGA 321
            +   V  A K L  M    C P +  +S+ +D L K      A++L   +   MV    
Sbjct: 311 CQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNC 370

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP--TPLNCATAITMLLDADEPEIA 379
            PD +T+N I   L +        K   EM ++   P  T  NC      L  + + E A
Sbjct: 371 IPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVD-GFLCKSCKTEEA 429

Query: 380 IEIWNYILENGILPLEASANELLVGL 405
           +++ N ++ NG+ P   +   L  GL
Sbjct: 430 LDLLNLMVSNGLCPDTTTYKSLAFGL 455



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 145/339 (42%), Gaps = 45/339 (13%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKY 163
           +G G+  +    N+++  L  +GR   + +A RV++  G   ++ T+ ++ + YC AG  
Sbjct: 88  SGSGKDPAVIPCNILIKKLCADGR---VADAERVVEALGPSATIITYNTMVNGYCRAGNI 144

Query: 164 D--------------------------------EAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           D                                +A+  FD M   G    VV  + LL A
Sbjct: 145 DAARRMIDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDA 204

Query: 192 ICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
            C+ E+   +A+  L+ ++ K  +PD  ++ +L+     +G+V EA K    +   +   
Sbjct: 205 TCK-ESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSL-PSYGCK 262

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ V  Y   L +L   ++ +EA K L  M   +C P    F+  +  L +      A +
Sbjct: 263 PDAV-TYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATK 321

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH----EMIKNEWQPTPLNCATA 366
           +    M  HG  PD +TY+ I + L K +RV E  K       EM+     P  +   T 
Sbjct: 322 VL-AQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTI 380

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           IT L      + AI++ + + E+G +P   + N ++ G 
Sbjct: 381 ITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGF 419



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 14/181 (7%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKE--------DGVLSLPTFASIFDSYCGAGKYDEAV 167
           ++ ++D L K  R ++   A++++KE        + +    TF +I  S C  G +D A+
Sbjct: 338 YSSIMDGLCKERRVDE---AIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAI 394

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEG 226
              D MS HG   D+   N ++     +  +T  AL+ LN  V   + PD  ++  L  G
Sbjct: 395 KVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFG 454

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             +E  +E A   F   V+    +P+ +L Y   L+ L +  + D A+ F   M    C 
Sbjct: 455 LSREDEMERAIGMF-RRVQAMGLSPDKML-YNAILLGLCKKWRTDLAIDFFAYMVSNGCM 512

Query: 287 P 287
           P
Sbjct: 513 P 513



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 10/216 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++  S C  G    A      MS HG   D++  +S++  +C+ E +   A++ L  
Sbjct: 302 TFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCK-ERRVDEAIKLLKE 360

Query: 209 -----VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
                V K   PD  +F  ++    ++G  + A K   EM E     P+ +  Y   +  
Sbjct: 361 LLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEH-GCIPD-ITTYNCIVDG 418

Query: 264 -LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
            L +  + +EAL  L +M      P    + +    L + ++   A+ ++  +    G  
Sbjct: 419 FLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAM-GLS 477

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
           PD + YN I   L K  R      FF  M+ N   P
Sbjct: 478 PDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMP 513



 Score = 42.7 bits (99), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 39/166 (23%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY-CGAGKYDEAVMSFDVM 173
           +N ++  L + G F++    V  M E G +  + T+  I D + C + K +EA+   ++M
Sbjct: 377 FNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLM 436

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--------------------- 212
             +G+  D     SL   + R E++  RA+    RV+ +                     
Sbjct: 437 VSNGLCPDTTTYKSLAFGLSR-EDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWR 495

Query: 213 ----VD-----------PDGDSFAILLEGWEKEGNVEEANKTFGEM 243
               +D           PD  ++ IL+EG   EG +EEA +  G +
Sbjct: 496 TDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFLEEAKELLGNL 541


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 147/327 (44%), Gaps = 4/327 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++    + G  E+ +  +  M + G+  SL T+ +I +  C  G+Y  A      M
Sbjct: 3   TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 62

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  D    N+LL   CR++N +     F   +++ V PD  SF+ L+  + +  ++
Sbjct: 63  LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHL 122

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A   F +M ++F   P++V+ Y   +    R   + EALK    M  + C   +  ++
Sbjct: 123 DQALVYFRDM-KKFGLVPDNVI-YTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYN 180

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             L+ L K    T A +L+D  MV  GA PD  T+  +     ++  + +    F  M +
Sbjct: 181 TILNGLCKEKMLTDADKLFD-EMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQ 239

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
              +P  +   T I       E E A E+W+ ++   I P   +   L+    ++G +S+
Sbjct: 240 RNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSE 299

Query: 414 VRRFAEEMLNRRILIYEVTMHKLKKAF 440
             R  + M+ + I    VT + + K +
Sbjct: 300 AFRLWDVMIEKGIKPTLVTCNTVIKGY 326



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 137/324 (42%), Gaps = 6/324 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           A +G + S + +N +++ L K GR+ +    +  M   G+     T+ ++    C    +
Sbjct: 28  ADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNF 87

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
            EA   F  M   GV  D+V+ +SL++   R      +AL +   +KK  + PD   + +
Sbjct: 88  SEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNR-HLDQALVYFRDMKKFGLVPDNVIYTV 146

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G+ + GN+ EA K   EM+E  +     V+AY T L  L + K + +A K    M  
Sbjct: 147 LMHGYCRNGNMLEALKIRDEMLE--QGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVE 204

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
               P    F+  +    +  + T A+ L+   M      PD + YN + +   K   + 
Sbjct: 205 RGALPDFYTFTTLIHGHCQDGNMTKALSLFGT-MTQRNIKPDIVAYNTLIDGFCKVGEME 263

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +  + +  MI  +  P  +     I           A  +W+ ++E GI P   + N ++
Sbjct: 264 KASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVI 323

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRI 426
            G    G  S    F   M+ + +
Sbjct: 324 KGYCRSGDSSKADEFLGRMIAKGV 347



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 39/289 (13%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +++ ++ V  +N   +Q     R MK+ G++     +  +   YC  G   EA+   D M
Sbjct: 108 SFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEM 167

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   DV+A N++L+ +C+++  T     F   V++   PD  +F  L+ G  ++GN+
Sbjct: 168 LEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNM 227

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A   FG M +R                                     N  P +  ++
Sbjct: 228 TKALSLFGTMTQR-------------------------------------NIKPDIVAYN 250

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D   K+ +   A +LWD  M+    FP+ +TY ++         V E  + +  MI+
Sbjct: 251 TLIDGFCKVGEMEKASELWD-GMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIE 309

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
              +PT + C T I     + +   A E    ++  G+ P   S N L+
Sbjct: 310 KGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLI 358


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 142/327 (43%), Gaps = 6/327 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +    N+MV    K G+ +   N +  M+E G      T+ ++ + YC AG   E
Sbjct: 377 KGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGE 436

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A  + D M    ++ D V +N++L  +CR E +   A + L+  +K     D  S+  L+
Sbjct: 437 AFRTMDEMGRKNMKMDSVTLNTILRTLCR-EKKLEEAYKLLSSARKRGYFIDEVSYGTLI 495

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ K+GNV+ A K + EM E+ E  P  V  Y   +  L +  + ++A+  L  +    
Sbjct: 496 VGYFKDGNVDRALKLWDEMKEK-EIIPSTV-TYNCIIGGLCQCGKTEQAISKLNELLESG 553

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P    ++  L    +  D   A Q  +  MV +   PD  T N++   L     + + 
Sbjct: 554 LLPDETTYNTILHGYCREGDVEKAFQFHN-KMVENSFKPDVFTCNILLRGLCMEGMLEKA 612

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            K F+  +        +   T IT L      + A  + + + E  + P   + N ++  
Sbjct: 613 LKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITA 672

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEV 431
           L + GR+ +   F  +ML +  L  +V
Sbjct: 673 LTDSGRIREAEEFMSKMLEKGXLPXQV 699



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 147/351 (41%), Gaps = 9/351 (2%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           AV+F    G+    SP    +N ++D L K GR     + +  MK  G+L +  T+  + 
Sbjct: 227 AVEFLNVMGK-YNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILV 285

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-V 213
             YC  G   EA    ++M+ + +  DV   N L++ +C  E +   A +  + ++ + +
Sbjct: 286 YGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLC-NEGRIEEAFKLRDEMENLKL 344

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  S+  L+ G  +   + EA K   EM E+    P  V  +   +    +  ++D+A
Sbjct: 345 LPDVVSYNTLINGCLEWSKISEAFKLLEEMSEK-GVKPNAV-THNIMVKWYCKEGKMDDA 402

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
              +  M+     P    ++  ++   K  +   A +  D M   +    DS+T N I  
Sbjct: 403 SNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKM-DSVTLNTILR 461

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L + K++ E  K      K  +    ++  T I         + A+++W+ + E  I+P
Sbjct: 462 TLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIP 521

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
              + N ++ GL   G+         E+L   +L  E T + +   +  E 
Sbjct: 522 STVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREG 572



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 135/333 (40%), Gaps = 56/333 (16%)

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE------- 196
           V ++ TF  +   YC   K+ +AV   +VM  +    D V  N++L A+C++        
Sbjct: 205 VPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARD 264

Query: 197 ---NQTSRAL-----------------EFLNRVKKIVD--------PDGDSFAILLEGWE 228
              +  SR L                  +L     +++        PD  ++ +L+ G  
Sbjct: 265 LLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLC 324

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
            EG +EEA K   EM E  +  P+ V++Y T +   +   ++ EA K L  M  +   P 
Sbjct: 325 NEGRIEEAFKLRDEM-ENLKLLPD-VVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKP- 381

Query: 289 LKFFSNAL--DILV-------KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
                NA+  +I+V       K++D+++ +      M   G  PD +TYN +     K  
Sbjct: 382 -----NAVTHNIMVKWYCKEGKMDDASNTIT----KMEESGFSPDCVTYNTLINGYCKAG 432

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
            + E  +   EM +   +   +   T +  L    + E A ++ +   + G    E S  
Sbjct: 433 NMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYG 492

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
            L+VG    G +    +  +EM  + I+   VT
Sbjct: 493 TLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVT 525



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/434 (19%), Positives = 168/434 (38%), Gaps = 82/434 (18%)

Query: 80  TPDLVHEVL--QLSYDSPSSAVDFFRWAGRGQRLSPY---------------------AW 116
           TP LV  +L  +     P+  + FF+WA       P+                     A 
Sbjct: 49  TPPLVLSILSSKTLISRPNILISFFKWAQTNLPTFPHNSLPSLLSLLPSLFSHRKFSDAK 108

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           +L++  +  + R +   + +R+      L      +   +Y  +G+   A   F  M   
Sbjct: 109 SLLLGFIATDRRHDLHLSILRLTSPSKAL----LDTAIGAYVQSGQPHHAFQIFKKMKRL 164

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALE---FLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
            +  +++  N+LL+++ R  +  S +     F + +K  + P+ ++F I++ G+  E   
Sbjct: 165 RLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKF 224

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A + F  ++ ++  +P++V  Y T L  L +  ++ +A   L  MK     P      
Sbjct: 225 KDAVE-FLNVMGKYNCSPDNV-TYNTILDALCKKGRLGDARDLLMDMKSRGLLPN----R 278

Query: 294 NALDILVK-------LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           N  +ILV        L ++ + ++L    M  +   PD  TYNM+   L    R+ E  K
Sbjct: 279 NTYNILVYGYCKMGWLKEAANVIEL----MTQNNLLPDVWTYNMLINGLCNEGRIEEAFK 334

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP------------- 393
              EM   +  P  ++  T I   L+  +   A ++   + E G+ P             
Sbjct: 335 LRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYC 394

Query: 394 --------------LEASA--------NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 431
                         +E S         N L+ G    G + +  R  +EM  + + +  V
Sbjct: 395 KEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSV 454

Query: 432 TMHKLKKAFYNESR 445
           T++ + +    E +
Sbjct: 455 TLNTILRTLCREKK 468


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 122/266 (45%), Gaps = 12/266 (4%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           N++V+ L +     +    +R ++ DGV   ++ T+ S+   YC AG+ ++A+  ++ M 
Sbjct: 273 NILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMV 332

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   +VV  N L++   +  N  S    +   + +   PD  +F+ L++G+ + G ++
Sbjct: 333 AVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLD 392

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLI---TLIRGKQVDEALKFLRVMKGE-NCFPTLK 290
           +A K + EM + +   P       TF I   T  +  +  EAL FL+ M    +  P   
Sbjct: 393 DAMKIWTEMAQ-YHIQPN----AHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAF 447

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            ++  +D+L K      A  +  I M   G  PD  TY ++        R+ E   FFH+
Sbjct: 448 IYNPVIDVLCKGGKVDEANMIL-IEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHK 506

Query: 351 MIKNEWQPTPLNCATAITMLLDADEP 376
           M++    P  +   + I+ LL +  P
Sbjct: 507 MVETGCSPDSIVVNSFISCLLKSGMP 532



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 87/186 (46%), Gaps = 10/186 (5%)

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGK 268
           +  PD  SF ++++G  K G+V++A     E+VER   F  +P+ V  +   +  L R K
Sbjct: 229 VYSPDVWSFNVVIKGVCKVGDVQKAL----ELVERMDEFGCSPDTV-THNILVNGLCRAK 283

Query: 269 QVDEALKFLRVMKGEN-CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           +V +  + LR ++ +  C P +  +++ +    K      A+ +++ M+   G  P+ +T
Sbjct: 284 EVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAV-GTSPNVVT 342

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN++     K   +      + +MI     P  +  ++ I       + + A++IW  + 
Sbjct: 343 YNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMA 402

Query: 388 ENGILP 393
           +  I P
Sbjct: 403 QYHIQP 408


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 133/310 (42%), Gaps = 8/310 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +    C   + +EA    + M + G   D +    L++ +C+   +   A +   R
Sbjct: 283 TFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKI-GRVDAAKDLFYR 341

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K   P    F  L+ G+   G +++A     +MV  +   P+ V  Y + +    +  
Sbjct: 342 IPK---PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPD-VCTYNSLIYGYWKKG 397

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            V  AL+ LR M+ + C P +  ++  +D   KL     A  L + M    G  P+++ +
Sbjct: 398 LVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSA-DGLKPNTVGF 456

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N +     K  R+ E  + F EM +   +P      + I+ L + DE + A+ +   ++ 
Sbjct: 457 NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 516

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY--NESRS 446
            G++    + N L+      G + + R+   EM+ +  L+ E+T + L K      E   
Sbjct: 517 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDK 576

Query: 447 MRDIFDSLER 456
            R +F+ + R
Sbjct: 577 ARSLFEKMLR 586



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 172/411 (41%), Gaps = 53/411 (12%)

Query: 76  GIIPTPDLVHEVLQ--LSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G +P  +  ++V+     +D  + A     R   RG       +  +++ L K GR +  
Sbjct: 276 GCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAA 335

Query: 133 WNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEA--VMSFDVMSMHGVEQDVVAVNSLL 189
            +   R+ K   V+    F ++   +   G+ D+A  V+S D+++ +G+  DV   NSL+
Sbjct: 336 KDLFYRIPKPTSVI----FNTLIHGFVTHGRLDDAKAVLS-DMVTSYGIVPDVCTYNSLI 390

Query: 190 SAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
               ++      ALE L  ++ K   P+  S+ IL++G+ K G ++EA     EM    +
Sbjct: 391 YGYWKK-GLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSA--D 447

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
               + + +   +    +  ++ EA++  R M  + C P +  F++ +  L ++++  HA
Sbjct: 448 GLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHA 507

Query: 309 VQLWDIM----------------------------------MVFHGAFPDSLTYNMIFEC 334
           + L   M                                  MVF G+  D +TYN + + 
Sbjct: 508 LWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKG 567

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L +   V +    F +M+++   P+ ++C   I  L  +   E A+E    ++  G  P 
Sbjct: 568 LCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPD 627

Query: 395 EASANELLVGLRNLGRLSD----VRRFAEEMLNRRILIYEVTMHKLKKAFY 441
             + N L+ GL   GR+ D     R+   E +    + Y   M  L K  +
Sbjct: 628 IVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGF 678



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 139/301 (46%), Gaps = 6/301 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + + Y++ ++VD   K G+ ++ +N +  M  DG+  +   F  +  ++C   +  E
Sbjct: 412 KGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPE 471

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILL 224
           AV  F  M   G + DV   NSL+S +C + ++   AL  L + + + V  +  ++  L+
Sbjct: 472 AVEIFREMPRKGCKPDVYTFNSLISGLC-EVDEIKHALWLLRDMISEGVVANTVTYNTLI 530

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
             + + G ++EA K   EMV  F+ +    + Y + +  L R  +VD+A      M  + 
Sbjct: 531 NAFLRRGEIKEARKLVNEMV--FQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 588

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P+    +  ++ L +      AV+ +   MV  G+ PD +T+N +   L +  R+ + 
Sbjct: 589 LVPSSISCNILINGLCRSGMVEEAVE-FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDG 647

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
              F ++      P  +   T ++ L        A  + +  +E+G +P + + + LL  
Sbjct: 648 LTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQS 707

Query: 405 L 405
           L
Sbjct: 708 L 708



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 155/350 (44%), Gaps = 13/350 (3%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP  + ++L+L  D  S++++ F W G  +G R S   + +++  LG NG F+ +   + 
Sbjct: 71  TPFQLCKLLELPLDV-STSMELFSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLM 129

Query: 138 VMKEDG-VLSLPTFASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
            MK++G V     F SI   Y  AG   +   +  ++ +++  E    + N +L  +   
Sbjct: 130 QMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSG 189

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                 A  F + + + + P   +F ++++       V+ A     +M  +    P  V+
Sbjct: 190 NCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMT-KHGCVPNSVI 248

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y+T + +L +  +V+EAL+ L  M    C P  + F++ +  L K +    A ++ + M
Sbjct: 249 -YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRM 307

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           ++  G  PD +TY  +   L K  RV   +  F+ + K    PT +   T I   +    
Sbjct: 308 LI-RGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PTSVIFNTLIHGFVTHGR 362

Query: 376 PEIAIEIW-NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            + A  +  + +   GI+P   + N L+ G    G +        +M N+
Sbjct: 363 LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNK 412



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 111/242 (45%), Gaps = 7/242 (2%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFD 155
           AV+ FR   R G +   Y +N ++  L +    +     +R M  +GV++   T+ ++ +
Sbjct: 472 AVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLIN 531

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVD 214
           ++   G+  EA    + M   G   D +  NSL+  +CR  E   +R+L F   ++  + 
Sbjct: 532 AFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSL-FEKMLRDGLV 590

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P   S  IL+ G  + G VEEA +   EMV R   +   ++ + + +  L R  ++++ L
Sbjct: 591 PSSISCNILINGLCRSGMVEEAVEFQKEMVLR--GSTPDIVTFNSLINGLCRAGRIEDGL 648

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
              R ++ E   P    ++  +  L K      A  L D   +  G  P+  T++++ + 
Sbjct: 649 TMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLD-EGIEDGFVPNDRTWSILLQS 707

Query: 335 LI 336
           L+
Sbjct: 708 LV 709



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 81/216 (37%), Gaps = 4/216 (1%)

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  ++  ++K G   +  +   EM   +   P    +Y   L  L+ G     A      
Sbjct: 143 FISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFK-SYNVVLEILVSGNCHKVAANVFYD 201

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQ-LWDIMMVFHGAFPDSLTYNMIFECLIKN 338
           M      PTL  F   +  L  +N+   A+  L D  M  HG  P+S+ Y  +   L K 
Sbjct: 202 MLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRD--MTKHGCVPNSVIYQTLIHSLSKC 259

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
            RV+E  +   EM      P        I  L   D    A ++ N +L  G  P + + 
Sbjct: 260 NRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITY 319

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
             L+ GL  +GR+   +     +     +I+   +H
Sbjct: 320 GYLMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIH 355


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 125/265 (47%), Gaps = 10/265 (3%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           N++VD L +     +    +R ++ DGV   ++ TF S+   YC AGK ++A+  ++ M 
Sbjct: 121 NILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMV 180

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G+  + V  N L++   +  +  S A+E   ++ ++   PD  +F+ L++G+ + G +
Sbjct: 181 ASGIMPNTVTYNVLINGYGKVGDLGS-AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQL 239

Query: 234 EEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKF 291
           ++A + + +M + R + N   V  +   + +L +  + DEA+  L  +    +  P    
Sbjct: 240 DDALRIWSDMAQHRIQPN---VYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFI 296

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +D+L K      A  L    M   G  PD  TY ++        R+ E   FFHEM
Sbjct: 297 YNPVIDVLCKCGKVDEA-NLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEM 355

Query: 352 IKNEWQPTPLNCATAITMLLDADEP 376
           ++    P  +     I+ LL A  P
Sbjct: 356 VEAGCSPDSITVNCFISCLLKAGMP 380



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 15/205 (7%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFD 171
           +N++++  GK G    + +AV V ++   L  P    TF+S+ D YC  G+ D+A+  + 
Sbjct: 191 YNVLINGYGKVG---DLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWS 247

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN--RVKKIVDPDGDSFAILLEGWEK 229
            M+ H ++ +V   + ++ ++C+Q N++  A+  LN   ++  + P    +  +++   K
Sbjct: 248 DMAQHRIQPNVYTFSIIIHSLCKQ-NRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCK 306

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-- 287
            G V+EAN     M E+    P+    Y   +I      ++ EA+ F   M    C P  
Sbjct: 307 CGKVDEANLIRKGMEEK-GCRPDK-YTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDS 364

Query: 288 -TLKFFSNALDILVKLNDSTHAVQL 311
            T+  F + L      N+  H ++L
Sbjct: 365 ITVNCFISCLLKAGMPNEVDHVMRL 389



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/325 (20%), Positives = 128/325 (39%), Gaps = 55/325 (16%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQM------WNAVRVMKEDGVLSLPTFASIFDSYCGAG 161
           G R+  YA+N ++  L   GR   +      W   RV   D    + +F  +    C  G
Sbjct: 41  GCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPD----VWSFNVVIKGVCRVG 96

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDS 219
           +  +A+   + M+  G   D V  N L+  +CR  N+ SR  E L R+++  +  P+  +
Sbjct: 97  QVQKALELVERMNEFGCSPDTVTHNILVDGLCRT-NEVSRGHEVLRRLQRDGVCMPNVVT 155

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  ++ G+ K G +E+A   + +MV                                   
Sbjct: 156 FTSVISGYCKAGKLEDAMAVYNDMV----------------------------------- 180

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
                  P    ++  ++   K+ D   AV+++  M       PD +T++ + +   +  
Sbjct: 181 --ASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCP-PDVVTFSSLIDGYCRCG 237

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI-LENGILPLEASA 398
           ++ +  + + +M ++  QP     +  I  L   +  + AI + N + L   I P     
Sbjct: 238 QLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIY 297

Query: 399 NELLVGLRNLGRLSD---VRRFAEE 420
           N ++  L   G++ +   +R+  EE
Sbjct: 298 NPVIDVLCKCGKVDEANLIRKGMEE 322



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 5/228 (2%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI-RGKQVDEA 273
           PD    + L+       N+ +A+ T       F    E   AY   + +LI RG+  D  
Sbjct: 9   PDARFLSFLVSSCTC-ANLLDASATLLSKASEFGCRVE-AYAYNKLMSSLIGRGRVHDVV 66

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
             F R ++     P +  F+  +  + ++     A++L + M  F G  PD++T+N++ +
Sbjct: 67  ALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEF-GCSPDTVTHNILVD 125

Query: 334 CLIKNKRVHEVEKFFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
            L +   V    +    + ++    P  +   + I+    A + E A+ ++N ++ +GI+
Sbjct: 126 GLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIM 185

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           P   + N L+ G   +G L       ++M   R     VT   L   +
Sbjct: 186 PNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGY 233



 Score = 45.4 bits (106), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 44/243 (18%), Positives = 96/243 (39%), Gaps = 11/243 (4%)

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
           S+A EF  RV+        ++  L+      G V +    F   ++   ++P+ V ++  
Sbjct: 35  SKASEFGCRVEAY------AYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPD-VWSFNV 87

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH 319
            +  + R  QV +AL+ +  M    C P     +  +D L + N+ +   ++   +    
Sbjct: 88  VIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDG 147

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
              P+ +T+  +     K  ++ +    +++M+ +   P  +     I       +   A
Sbjct: 148 VCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSA 207

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHK 435
           +E++  +      P   + + L+ G    G+L D  R   +M   RI      + + +H 
Sbjct: 208 VEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHS 267

Query: 436 LKK 438
           L K
Sbjct: 268 LCK 270


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 141/343 (41%), Gaps = 3/343 (0%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   +G   S  A+N ++  L K G+ ++       MK+D   +L T+  + D  C AGK
Sbjct: 333 RQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAPNLSTYNILIDMLCRAGK 392

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            D A    D M   G+  +V  VN ++  +C+ +        F     K+  PD  +F  
Sbjct: 393 LDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCS 452

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  K G V++A K + +M++       + + Y + +       + ++  K  + M  
Sbjct: 453 LIDGLGKVGRVDDAYKIYEKMLD--SDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVN 510

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +NC P L+  +  +D + K  +      +++ +       PD+ +Y+++   LIK    +
Sbjct: 511 QNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKS-RRFVPDARSYSILIHGLIKAGFAN 569

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E  + F+ M +             I       +   A ++   +   G  P   +   ++
Sbjct: 570 ETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVI 629

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            GL  + RL +     EE  ++RI +  V    L   F    R
Sbjct: 630 DGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGR 672



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 139/329 (42%), Gaps = 41/329 (12%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKY 163
           + +R  P A  +++++  L K G   + +     MKE G VL    +  + D +C  GK 
Sbjct: 544 KSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKV 603

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           ++A    + M   G E  VV   S++  + + +      + F     K ++ +   ++ L
Sbjct: 604 NKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSL 663

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G+ K G ++EA     E++++    P +V  + + L  L++ ++++EAL   + MK  
Sbjct: 664 IDGFGKVGRIDEAYLILEELMQK-GLTP-NVYTWNSLLDALVKAEEINEALVCFQSMKEL 721

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
            C P                                    + +TY ++   L K ++ ++
Sbjct: 722 KCTP------------------------------------NQVTYGILINGLCKVRKFNK 745

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
              F+ EM K   +P+ ++  T I+ L  A     A  +++    NG +P  A  N ++ 
Sbjct: 746 AFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIE 805

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
           GL N  R  D     EE   R + I+  T
Sbjct: 806 GLSNGNRAMDAFSLFEETRRRGLHIHNKT 834



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 139/319 (43%), Gaps = 7/319 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G   + + +  ++    K GR +   + +  MK   +   +  +    DS+   GK D A
Sbjct: 198 GYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMA 257

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLE 225
              F  +  +G++ D V   S++  +C+  N+   A+E    ++K    P   ++  ++ 
Sbjct: 258 WKFFHEIEANGLKPDEVTYTSMIGVLCKA-NRLDEAVEMFEHLEKNRRVPCTYAYNTMIM 316

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+   G  +EA        +R + +   V+AY   L  L +  +VDEAL+    MK ++ 
Sbjct: 317 GYGSAGKFDEAYSLLER--QRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMK-KDA 373

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P L  ++  +D+L +      A +L D M    G FP+  T N++ + L K++++ E  
Sbjct: 374 APNLSTYNILIDMLCRAGKLDCAFELRDSMQK-AGLFPNVRTVNIMVDRLCKSQKLDEAC 432

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             F +M      P  +   + I  L      + A +I+  +L++           L+   
Sbjct: 433 AIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNF 492

Query: 406 RNLGRLSDVRRFAEEMLNR 424
            N GR  D  +  ++M+N+
Sbjct: 493 FNHGRKEDGHKIYKDMVNQ 511



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 128/309 (41%), Gaps = 5/309 (1%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+H +++  + + +  + F+    +G  L   A+N+++D   K G+  + +  +  MK  
Sbjct: 558 LIHGLIKAGFANETYEL-FYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTK 616

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           G   ++ T+ S+ D      + DEA M F+      +E +VV  +SL+    +       
Sbjct: 617 GFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEA 676

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
            L     ++K + P+  ++  LL+   K   + EA   F  M E  +  P  V  Y   +
Sbjct: 677 YLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKE-LKCTPNQV-TYGILI 734

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             L + ++ ++A  F + M+ +   P+   ++  +  L K  +   A  L+D     +G 
Sbjct: 735 NGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKA-NGG 793

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            PDS  YN + E L    R  +    F E  +         C   +  L   D  E A  
Sbjct: 794 VPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNKTCVVLLDTLHKNDCLEQAAI 853

Query: 382 IWNYILENG 390
           +   + E G
Sbjct: 854 VGAVLRETG 862



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 83/411 (20%), Positives = 151/411 (36%), Gaps = 110/411 (26%)

Query: 36  TRPRFPTHLDA----------PYISSSARII----CEILAHAS-SDDIESALACTGIIPT 80
            R +F  HL +          PY     R I    C +L   +     E+AL+     P 
Sbjct: 5   ARTKFCKHLSSLSDNGENHEKPYTFEGNRQIVNDICNVLETGAWGPSAENALSALNFKPQ 64

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P+ V  VL+   D  + A+++FRW  R   L   P ++N ++ V+ +   F+ +   +  
Sbjct: 65  PEFVIGVLRRLKDV-NRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQIL-- 121

Query: 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI--CRQE 196
               G +S+  F                                 +VN+ +  +  C + 
Sbjct: 122 ----GEMSVAGFGP-------------------------------SVNTCIEMVLSCVKA 146

Query: 197 NQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           N+     + +  ++K    P   ++  L+  +    + +     F +M E         L
Sbjct: 147 NKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQE---------L 197

Query: 256 AYET---FLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
            YE       TLIRG     +VD AL  L  MK           S++LD           
Sbjct: 198 GYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMK-----------SSSLD----------- 235

Query: 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 368
                          D + YN+  +   K  +V    KFFHE+  N  +P  +   + I 
Sbjct: 236 --------------ADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIG 281

Query: 369 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
           +L  A+  + A+E++ ++ +N  +P   + N +++G  + G+  +     E
Sbjct: 282 VLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLE 332


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 158/394 (40%), Gaps = 50/394 (12%)

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-- 148
           S   P+ A++  R   R   ++   +N ++      GR +   + +R M+E G ++ P  
Sbjct: 495 SAGKPARALELLRQMPRPNAVT---YNTVIAGFCSRGRVQAALDIMREMRERGGIA-PNQ 550

Query: 149 -TFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQ----------- 195
            T+ ++   +C  G+ DEAV  FD M   G V+ + V  N+L+   C Q           
Sbjct: 551 YTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRD 610

Query: 196 -----------------------ENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
                                  + + + A E +  +  K + PD  ++ IL+ G  KEG
Sbjct: 611 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 670

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           NV++A + F  M  R       V+ Y   +  L +  QV E  K           P L  
Sbjct: 671 NVKKALEIFENMSRRGVR--ATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVL 728

Query: 292 FSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
           + NAL  +   + S +  + ++IM  M      PD +TYN +   L    RV E  K   
Sbjct: 729 Y-NAL--INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLID 785

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM +   QP  +   T I+      + + A+ I N ++  G  P   + N L+ GL   G
Sbjct: 786 EMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 845

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
           +  D     +EM+   I   + T   L +    E
Sbjct: 846 QGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 879



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 121/277 (43%), Gaps = 4/277 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           R   RG  ++   +NL+V  L  +GR  + +  V  M   G+   + T+  + + +C  G
Sbjct: 611 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 670

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
              +A+  F+ MS  GV   VV   +L+ A+ ++         F   V++ + PD   + 
Sbjct: 671 NVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 730

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+      GN++ A +  GEM E+    P+ V  Y T +  L    +VDEA K +  M 
Sbjct: 731 ALINSHSTSGNIDRAFEIMGEM-EKKRIAPDDV-TYNTLMRGLCLLGRVDEARKLIDEMT 788

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
                P L  ++  +       D   A+++ + MM   G  P  LTYN + + L KN + 
Sbjct: 789 ERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM-NKGFNPTLLTYNALIQGLCKNGQG 847

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            + E    EM++N   P      + I  L   DE  I
Sbjct: 848 DDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAI 884



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 141/351 (40%), Gaps = 50/351 (14%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L   TF  +    C AGK   A+     M       + V  N++++  C +  +   AL+
Sbjct: 481 LCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSR-GRVQAALD 535

Query: 205 FLN--RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
            +   R +  + P+  ++  ++ GW K G V+EA K F EM+ + E  PE V+ Y   + 
Sbjct: 536 IMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM-YNALIG 594

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
                 ++D AL +   M       T+  ++  +  L      T A +L +  M   G  
Sbjct: 595 GYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVE-EMGGKGLA 653

Query: 323 PDSLTYNM----------------IFE-------------------CLIKNKRVHEVEKF 347
           PD  TYN+                IFE                    L K  +V E +K 
Sbjct: 654 PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKL 713

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           F E ++   +P  +     I     +   + A EI   + +  I P + + N L+ GL  
Sbjct: 714 FDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCL 773

Query: 408 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR-DIFDSLERR 457
           LGR+ + R+  +EM  R I    VT + L   +     SM+ D+ D+L  R
Sbjct: 774 LGRVDEARKLIDEMTERGIQPDLVTYNTLISGY-----SMKGDVKDALRIR 819


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 125/272 (45%), Gaps = 5/272 (1%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
           S + +  ++  + K G+ E     V  M+  G+ L+   F ++ D YC +G  DEA+   
Sbjct: 368 SAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQ 427

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
            VM   G+E DV A NS+ S +C+   +        + V++ V P+  SF  L++ + KE
Sbjct: 428 VVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKE 487

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN  EA + F EM E+   N  +++ Y   +    +   + EA K    ++     P + 
Sbjct: 488 GNFVEAKRVFREMEEK--GNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVY 545

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
             ++ +           A++L+D  M   G  P+ +TY  +   L K+ R  E  K + E
Sbjct: 546 TCTSLIHGECIDGKVDMALKLFD-EMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDE 604

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           M +    P     ++ +  L  ADE  I+++I
Sbjct: 605 MKETGLTPDDTVYSSLVGSLHSADES-ISMQI 635



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/351 (20%), Positives = 138/351 (39%), Gaps = 35/351 (9%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
           A +G + +   +N  ++   K      +   + +M+++GV  ++ T+  +   +   GK 
Sbjct: 256 AAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKI 315

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           +EA   F+ M   G+E DV    S++S  CR  N     + F     K + P   ++  L
Sbjct: 316 EEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGAL 375

Query: 224 LEGWEKEGNVEEANKTFGEMVER-FEWNP------------------------------- 251
           + G  K G +E A     EM  +  + NP                               
Sbjct: 376 IHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGL 435

Query: 252 -EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
              V AY +    L +  + DEA   L  M      P    F+  +DI  K  +   A +
Sbjct: 436 ESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKR 495

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           ++   M   G  P+ +TYN++ +   K   + E  K   E+      P    C + I   
Sbjct: 496 VFR-EMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGE 554

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
               + ++A+++++ + + G++P   +   ++ GL   GR  +  +  +EM
Sbjct: 555 CIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEM 605



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 92/243 (37%), Gaps = 5/243 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +F  Y     + EA+ +F+ M   G   D  +    L A+ R+  Q    L F  R+
Sbjct: 162 FDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLAL-RRGGQVDSCLRFFRRM 220

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             + V+    S  I+L+G  K G+VE   K   E+  +      +V+ Y  F+    +  
Sbjct: 221 VNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAK--GVKANVVTYNAFIEGYFKRL 278

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            +    + L +M+ E     +  ++  +     +     A +L++ M    G   D   Y
Sbjct: 279 DLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMRE-KGIEADVYVY 337

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
             I  C  ++  V      F EM      P+       I  +  A + E A  + N +  
Sbjct: 338 TSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQG 397

Query: 389 NGI 391
            GI
Sbjct: 398 KGI 400


>gi|255660934|gb|ACU25636.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 484

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 134/287 (46%), Gaps = 9/287 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHGSKKS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY  AG   E+V  F  M   GVE+ + + ++L   
Sbjct: 65  RCILLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLCGKVETANRFFEDMKXR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A+ L
Sbjct: 184 D-VITYNTMINGYYRVKKIEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALTL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
            + M  F G  P+++TY+ +   L   +++ E      EM+     P
Sbjct: 243 LEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEASGILKEMVDKYIAP 288



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 11/226 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K G V+E+ K F +M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKLFQKMEELGVER------TIKSYDAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F+  +           A + ++ M     
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLCGKVETANRFFEDMKXREI 181

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
           + PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D  + A+
Sbjct: 182 S-PDVITYNTMINGYYRVKKIEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            +   +   GI P   + + LL GL N  ++S+     +EM+++ I
Sbjct: 241 TLLEEMKGFGIKPNAITYSTLLPGLCNAEKMSEASGILKEMVDKYI 286



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 53/259 (20%), Positives = 101/259 (38%), Gaps = 34/259 (13%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ T+ ++   Y    + D+A+   + M   G++ + +  ++LL  +C  E  +  +   
Sbjct: 219 TVVTYTTLIKGYVSVDRVDDALTLLEEMKGFGIKPNAITYSTLLPGLCNAEKMSEASGIL 278

Query: 206 LNRVKKIVDPDGDS-FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
              V K + P  +S F  L+ G  K GN++ A      M+ R    P     Y   +   
Sbjct: 279 KEMVDKYIAPKDNSIFLRLISGQCKAGNLDAAADVLKAMI-RLSV-PTEAGHYGVLIENY 336

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            +    ++A+K L  +  +             DI+++   S H                +
Sbjct: 337 CKAGDYEKAIKLLDKLIEK-------------DIVLRPQSSLHM---------------E 368

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIW 383
              YN + E L  N +  + E    +++K   Q PT LN  T I        P+ A E+ 
Sbjct: 369 PSAYNPLVEYLCNNGQTAKAETLVRQLMKLGVQDPTALN--TLIRGHSQEGSPDSAFELL 426

Query: 384 NYILENGILPLEASANELL 402
             +L   I   ++S + L+
Sbjct: 427 KIMLRRKIDSEKSSYDSLV 445


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 160/354 (45%), Gaps = 11/354 (3%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156
           AVD F W  + G  +S YA + M+D+L  + R + +      M +     L  +  +F+S
Sbjct: 159 AVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEMCK----GLGVYEFVFNS 214

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDP 215
           +   G+ ++ +     +   G+   +V  N +L  +C   NQ   A +F +  V+    P
Sbjct: 215 FLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLC-MGNQIGVASDFFDMMVRSGPSP 273

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           +  +F+ L+  + KE  ++EA   +  M+E+    P+ V+ Y   +  L R  +++E   
Sbjct: 274 NLVTFSTLINVYCKELRLDEAFSLYNLMIEK-GIVPDLVI-YSILINGLFRAGKLEEGNS 331

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
              +         +  FS+ +D  V++ D   A++++  M+   G  P+ +TY+++   L
Sbjct: 332 LFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLK-EGISPNVVTYSILINGL 390

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
            +N RV E    F +++K   +P+ L  ++ I     ++       ++  +L  G +P  
Sbjct: 391 CRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDV 450

Query: 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD 449
              + L+ GL   G + +  RF  + + R + +     + L    +   R+ RD
Sbjct: 451 VVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRT-RD 503



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 145/334 (43%), Gaps = 42/334 (12%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A DFF    R G   +   ++ +++V  K  R ++ ++   +M E G++  L  ++ + +
Sbjct: 259 ASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILIN 318

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVD 214
               AGK +E    F +    GV+ DVV  +S++ A  R      +A+E   R +K+ + 
Sbjct: 319 GLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRV-GDLGKAIEVYTRMLKEGIS 377

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  +++IL+ G  + G V EA   FG+++++    P  VL Y + +    + + + +  
Sbjct: 378 PNVVTYSILINGLCRNGRVLEACGVFGQILKQ-GLEPS-VLTYSSLIDGFCKSENLRDGF 435

Query: 275 KFLRVMKGENCFP--------------------TLKFFSNA---------------LDIL 299
               +M  +   P                     L+FF  A               +D  
Sbjct: 436 GLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGC 495

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            +L  +   ++++ I+M  +   PD +TY ++ + L +  R+ E    F +++K  + P 
Sbjct: 496 FRLKRTRDGLKMY-ILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPD 554

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            +   T I       +P   ++I+  +  NGI P
Sbjct: 555 HIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFP 588



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/396 (19%), Positives = 160/396 (40%), Gaps = 13/396 (3%)

Query: 61  AHASSDDIESALACTGII----PTPDLVHEVLQLSYDSPSSAVD-----FFRWAGRGQRL 111
               S+++       GI+      PD+V   + ++  S    +D     FF+   RG  L
Sbjct: 424 GFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTL 483

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           + Y +N ++D   +  R         +M    V+  + T+  +       G+ DEA+  F
Sbjct: 484 NNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALF 543

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             +   G   D +   +L+   C++ +  +    F       + PD   + +L+  + +E
Sbjct: 544 FQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFRE 603

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G VE   +   E++ ++   P+ ++ Y T +      K   +A+K   V+K     P   
Sbjct: 604 GCVENVLELLREII-KYGLEPD-IVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAI 661

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            F+  +D   K      A+ ++  M+   G  P+ LTY+ + +   K +      + + +
Sbjct: 662 TFTILIDAYCKDGRMDDAMLIFSSMLE-RGPEPNILTYSCLIDGYFKTENTESAFELYEK 720

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M+ +   P  ++ +  I  L      E A   +   +   +LP   +   L+ G   +GR
Sbjct: 721 MLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGR 780

Query: 411 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446
           L++     + ML   I+  ++    L +  + +S++
Sbjct: 781 LAEAMMLYDHMLVNGIMPDDLLQKALAEYGFQDSQA 816


>gi|242078797|ref|XP_002444167.1| hypothetical protein SORBIDRAFT_07g011860 [Sorghum bicolor]
 gi|241940517|gb|EES13662.1| hypothetical protein SORBIDRAFT_07g011860 [Sorghum bicolor]
          Length = 520

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 157/378 (41%), Gaps = 60/378 (15%)

Query: 87  VLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGV 144
            L L Y    SAVD       G  L P A  W+L V   GK  RF+  W  VR M+  GV
Sbjct: 112 ALALRYGDECSAVD----GADGAGLPPPADAWHLAVWAAGKARRFDLAWAVVRRMRNRGV 167

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRAL 203
           L+      + + Y  A + ++AV +FDVM    VE D     SLL A+C+ +N + +  L
Sbjct: 168 LTGRAMVILMERYAAANEVNKAVKTFDVMEKFKVESDQSVFYSLLRALCKSKNIEDAEEL 227

Query: 204 EFLNR--------------------------VKKI--------VDPDGDSFAILLEGWEK 229
             L +                           K++        + PDG S+ +++  + K
Sbjct: 228 LLLRKKFFPLSAEGFNIILDGWCNVITDLAEAKRVWREMSNHCITPDGMSYTLMISCFSK 287

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G++ +  + + EM +R  W P  +  Y + +  L R   V +A      +  E   P +
Sbjct: 288 VGSLFDTLRVYDEMKKR-GWIP-GIGVYNSLVYVLTRENCVKDAHNIFSKLTDEGLQPDV 345

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
           + +++   ++V L +S    +   +M  M+  G  P   TY+      +K + + E  K 
Sbjct: 346 ETYNS---MIVPLCESCKLDEARVVMESMILKGIVPTISTYH----AFLKQEGIDESLKL 398

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDA----DEPEIAIEIWNYILENGILPLEASANELLV 403
             +M ++   P     +    ML D     +E   A+ +WN + +  I P+ +    ++ 
Sbjct: 399 LQKMKEDGCGPK----SDTFLMLFDKFFLLNESGNALRVWNEMRKYKISPVRSHYMTVVE 454

Query: 404 GLRNLGRLSDVRRFAEEM 421
           GL   G +     + +EM
Sbjct: 455 GLVKHGCIPRALEYYDEM 472


>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Glycine max]
          Length = 664

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 138/291 (47%), Gaps = 12/291 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+S+   Y   G+  E V  + VM + GV  +VV  N+LL+ +C   N  + A++   R
Sbjct: 319 TFSSLMKGYFLGGRVGEGVGLWRVMVLEGVRPNVVVYNTLLNGLCCSGN-LAEAVDVCGR 377

Query: 209 VKK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           ++K     P+  +++ L+ G+ K G+++ A++ + +MV      P +V+ Y + +  L +
Sbjct: 378 MEKDCFCRPNVTTYSTLVHGFVKAGDLQGASEVWNKMVN-CGVRP-NVVVYTSMVDVLCK 435

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
               D+A + +  M  + C PT+  F+  +  L        A+++ D M  + G  PD+ 
Sbjct: 436 NSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRVLWAMRVVDQMQRY-GCLPDTR 494

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL---DADEPEIAIEIW 383
           TYN + + L     + E  +   E+   E +   LN  T  T++       + E  +++ 
Sbjct: 495 TYNELLDGLFSVNELKEACELIREL---EERKVELNLVTYNTVMYGFSSHGKEEWVLQVL 551

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
             +L NG+ P   + N ++     LG++    +F + +   + L  ++  H
Sbjct: 552 GRMLVNGVKPDAITVNVVIYAYSKLGKVRTAIQFLDRITAGKELCPDIIAH 602



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 151/342 (44%), Gaps = 10/342 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RG      ++  +V  + ++GR E+     R    +GV+S+    ++    C  G+  E 
Sbjct: 209 RGCVPDGVSYTTVVAAMCEDGRVEEAREVARRFGAEGVVSVCN--ALICGLCREGRVGEV 266

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLE 225
               D M  +GV+ +VV+ +S++S +     +   AL  L + +++   P+  +F+ L++
Sbjct: 267 FGLMDEMVGNGVDPNVVSYSSVISWL-SDVGEVELALAVLGKMIRRGCRPNVHTFSSLMK 325

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+   G V E    +  MV   E    +V+ Y T L  L     + EA+     M+ ++C
Sbjct: 326 GYFLGGRVGEGVGLWRVMV--LEGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRME-KDC 382

Query: 286 F--PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
           F  P +  +S  +   VK  D   A ++W+  MV  G  P+ + Y  + + L KN    +
Sbjct: 383 FCRPNVTTYSTLVHGFVKAGDLQGASEVWN-KMVNCGVRPNVVVYTSMVDVLCKNSMFDQ 441

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
             +    M  +   PT +   T I  L        A+ + + +   G LP   + NELL 
Sbjct: 442 AYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNELLD 501

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           GL ++  L +      E+  R++ +  VT + +   F +  +
Sbjct: 502 GLFSVNELKEACELIRELEERKVELNLVTYNTVMYGFSSHGK 543



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 131/351 (37%), Gaps = 70/351 (19%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
           +P  +++M++ LG+N   + +   +  MK + +  S  +F  + +SY  +G  D A+  F
Sbjct: 72  TPLTYHVMIEKLGRNSELDALHYILHQMKIERIPCSQDSFICVLNSYKNSGLGDRALKMF 131

Query: 171 -------------------------------------DVMSMHGVEQDVVAVNSLLSAIC 193
                                                + M   G+E +V   N LL A+C
Sbjct: 132 YRIKEFGCKPTVKIYNHLLDALLGESGNKFHMIGAVYENMRGEGMEPNVFTYNVLLKALC 191

Query: 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA----------------- 236
           +           +   K+   PDG S+  ++    ++G VEEA                 
Sbjct: 192 KNGKLDGACKLLVEMSKRGCVPDGVSYTTVVAAMCEDGRVEEAREVARRFGAEGVVSVCN 251

Query: 237 ------------NKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
                        + FG M E      + +V++Y + +  L    +V+ AL  L  M   
Sbjct: 252 ALICGLCREGRVGEVFGLMDEMVGNGVDPNVVSYSSVISWLSDVGEVELALAVLGKMIRR 311

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
            C P +  FS+ +            V LW + MV  G  P+ + YN +   L  +  + E
Sbjct: 312 GCRPNVHTFSSLMKGYFLGGRVGEGVGLWRV-MVLEGVRPNVVVYNTLLNGLCCSGNLAE 370

Query: 344 VEKFFHEMIKNEW-QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
                  M K+ + +P     +T +   + A + + A E+WN ++  G+ P
Sbjct: 371 AVDVCGRMEKDCFCRPNVTTYSTLVHGFVKAGDLQGASEVWNKMVNCGVRP 421



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 4/157 (2%)

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILV-KLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           D ALK    +K   C PT+K +++ LD L+ +  +  H +      M   G  P+  TYN
Sbjct: 125 DRALKMFYRIKEFGCKPTVKIYNHLLDALLGESGNKFHMIGAVYENMRGEGMEPNVFTYN 184

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
           ++ + L KN ++    K   EM K    P  ++  T +  + +    E A E+       
Sbjct: 185 VLLKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVVAAMCEDGRVEEAREVARRFGAE 244

Query: 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           G++ +    N L+ GL   GR+ +V    +EM+   +
Sbjct: 245 GVVSV---CNALICGLCREGRVGEVFGLMDEMVGNGV 278



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 43/231 (18%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G R +   +  MVDVL KN  F+Q +  +  M  DG   ++ TF +     C  G+   A
Sbjct: 418 GVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRVLWA 477

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKI------------ 212
           +   D M  +G   D    N LL  +    N+   A E +  +  +K+            
Sbjct: 478 MRVVDQMQRYGCLPDTRTYNELLDGL-FSVNELKEACELIRELEERKVELNLVTYNTVMY 536

Query: 213 ----------------------VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
                                 V PD  +  +++  + K G V  A +    +    E  
Sbjct: 537 GFSSHGKEEWVLQVLGRMLVNGVKPDAITVNVVIYAYSKLGKVRTAIQFLDRITAGKELC 596

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           P+ ++A+ + L  +     ++EA+ +L  M  +  FP +  +    D+LV+
Sbjct: 597 PD-IIAHTSLLWGICNSLGIEEAIVYLNKMLNKGIFPNIATW----DVLVR 642


>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
          Length = 714

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 139/309 (44%), Gaps = 54/309 (17%)

Query: 117 NLMVD-----VLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMS 169
           NL+V+     +  KNG  +  +  V  MK+  V   +L T++++ +  CG+G+  EA+  
Sbjct: 242 NLLVESNQSSITAKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIEL 301

Query: 170 FDVM-SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGW 227
           F+ M S   +  D +  N+L++  C    +  RAL+ +  +KK   +P+  +++ L+ G+
Sbjct: 302 FEEMVSKDQILPDALTYNALINGFC-HGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGF 360

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            KEG +EEA + F EM +     P+ V  Y T +    R  +VDEA++ L+ M    C  
Sbjct: 361 CKEGRLEEAKEVFDEM-KSLGLKPDTV-GYTTLINFFCRAGRVDEAMELLKDMXENKC-- 416

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
                                               D++T+N+I   L +  R  E    
Sbjct: 417 ----------------------------------RADTVTFNVILGGLCREGRFEEAXGM 442

Query: 348 FHEMIKNEWQPTPLNCAT---AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
              +    ++   LN A+    +  L    E + A ++   +L  G+LP  A++NELLV 
Sbjct: 443 LERL---PYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVH 499

Query: 405 LRNLGRLSD 413
           L   G++ D
Sbjct: 500 LCEAGKVGD 508



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/269 (20%), Positives = 125/269 (46%), Gaps = 22/269 (8%)

Query: 98  AVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIF 154
           A++ F       ++ P A  +N +++      + ++    +  MK++G   ++  ++++ 
Sbjct: 298 AIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALM 357

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIV 213
           + +C  G+ +EA   FD M   G++ D V   +L++  CR   +   A+E L +  +   
Sbjct: 358 NGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRA-GRVDEAMELLKDMXENKC 416

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV--LAYETFLITLIRGKQVD 271
             D  +F ++L G  +EG  EEA      M+ER  +   ++   +Y   L +L R  ++ 
Sbjct: 417 RADTVTFNVILGGLCREGRFEEAXG----MLERLPYEGVYLNKASYRIVLNSLCREGELQ 472

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-----PDSL 326
           +A + + +M G    P    F+ + ++LV L     A ++ D +M   G       P+  
Sbjct: 473 KATQLVGLMLGRGVLP---HFATSNELLVHL---CEAGKVGDAVMALLGLLELGFKPEPN 526

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           ++ ++ E + + +++    +   +++  E
Sbjct: 527 SWALLVELICRERKLLPAFELLDDLVIQE 555



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 119/282 (42%), Gaps = 18/282 (6%)

Query: 194 RQENQTSRALEFLNRV--KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWN 250
           ++E    RALE  NRV  ++    +  ++A +L    K    +  +    +M  E  +++
Sbjct: 138 KRETDPQRALEIFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMTYETCKFH 197

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
               L        L   ++V E    +  +  E   P+LK  S  L++LV+ N S+   +
Sbjct: 198 EGIFLNLMKHFSKLSLHERVVEMFDAIXPIVREK--PSLKAISTCLNLLVESNQSSITAK 255

Query: 311 LWDIMMVF---------HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI-KNEWQPTP 360
             DI   F         H ++P+ +TY+ +   L  + R+ E  + F EM+ K++  P  
Sbjct: 256 NGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDA 315

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 420
           L     I       + + A++I  ++ +NG  P   + + L+ G    GRL + +   +E
Sbjct: 316 LTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDE 375

Query: 421 MLNRRILIYEVTMHKLKKAFYNESR---SMRDIFDSLERRCK 459
           M +  +    V    L   F    R   +M  + D  E +C+
Sbjct: 376 MKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCR 417



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 1/181 (0%)

Query: 266 RGKQVDEALKFLRVMKGENC-FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
           +   +D A + +  MK  +  +P L  +S  ++ L        A++L++ M+      PD
Sbjct: 255 KNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPD 314

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
           +LTYN +        +V    K    M KN   P   N +  +         E A E+++
Sbjct: 315 ALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFD 374

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            +   G+ P       L+      GR+ +     ++M   +     VT + +      E 
Sbjct: 375 EMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREG 434

Query: 445 R 445
           R
Sbjct: 435 R 435


>gi|255660892|gb|ACU25615.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 481

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 134/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  +   A+ FF W  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-SSKTSEHALQFFXWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARVXLKEMMDKYLAPT 289



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K+G V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVXLKEMMDK 284



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 58/301 (19%), Positives = 116/301 (38%), Gaps = 37/301 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + + +SP    +N M++   +  + E+       MK   +  ++ T+ ++   Y    + 
Sbjct: 177 KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQV 236

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS-FAI 222
           D+A+   + M   G++ + +  ++LL  +C  E  +   +     + K + P  +S F  
Sbjct: 237 DDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVXLKEMMDKYLAPTDNSIFMR 296

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+    K GN++ A      M  R    P     Y   +    +  Q D+A+K L  +  
Sbjct: 297 LISSHCKSGNLDAAADVLKAMX-RLSV-PTEAGHYGVLIENFCKXGQYDKAVKLLDKLIE 354

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +             DI+++   + H                +   YN + E L  N +  
Sbjct: 355 K-------------DIILRPQSTLHL---------------EPSAYNPMIEYLCNNGQAA 386

Query: 343 EVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
           + E    +++K   Q PT LN  T I        P+ A E+   +L   +   ++  N L
Sbjct: 387 KAETLVRQLLKLGVQDPTALN--TLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSXYNSL 444

Query: 402 L 402
           +
Sbjct: 445 V 445


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 122/288 (42%), Gaps = 5/288 (1%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +++ L K GR  +  + V ++   G   +L TF S+ D YC  G   EAV   D M   G
Sbjct: 511 IINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVG 570

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           VE D+   N+L+   C+          F + + K V     S+ I+L G  +      A 
Sbjct: 571 VEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAK 630

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           + F EM+E       H   Y T L  L R    DEA   L  +   N    +  F+  + 
Sbjct: 631 EMFHEMIESGMAVSIHT--YATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIR 688

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
            + K+     A +L+  +  + G  P  LTY ++   LIK +   + +  F  M K+   
Sbjct: 689 AMFKVGRRQEAKELFAAISTY-GLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCT 747

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           P        I MLL+  E   A    + I + GILP EA+   LL+ L
Sbjct: 748 PDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILP-EATTTSLLIYL 794



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 129/286 (45%), Gaps = 3/286 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +    ++  ++      G    M N   VM  +GV+     F ++ ++Y   G  D+
Sbjct: 358 KGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDK 417

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           +++ F+ M+  GV  D++  ++++SA CR         +F + +   V PD   ++ L++
Sbjct: 418 SLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQ 477

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G     ++ +A +   +M+ +    P  +  + + +  L +  +V E    + ++     
Sbjct: 478 GQCNRRDLVKAKELISDMLSK-GIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQ 536

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P L  F++ +D    + +   AV L D M    G  PD  TYN + +   K+ R+ +  
Sbjct: 537 RPNLITFNSLVDGYCLVGNMKEAVGLLDSMESV-GVEPDIYTYNTLVDGYCKHGRIDDAL 595

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
             F +M+      T ++    +  L  A    +A E+++ ++E+G+
Sbjct: 596 TLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGM 641



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/340 (20%), Positives = 142/340 (41%), Gaps = 10/340 (2%)

Query: 93  DSPSSAVDFFRWAGRGQ--RLSP--YAWNLMVDVLGKNGRFEQMWNAV--RVMKEDGVLS 146
           D P+ AV+ F+   R      +P  Y +N++++   +  R   +   V  R+++      
Sbjct: 165 DVPALAVELFKRMDRCACPEAAPTIYTYNILINCY-RRARRPDLGLPVFGRLLRTGLGPD 223

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           + ++ ++ D +   G+ D+A   F  M   G+  +VV  +SL++ +C+ +          
Sbjct: 224 VFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLR 283

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
             V   V P+  ++  L+ G+   G  +E+ + F EM       P+ V    +F+  L +
Sbjct: 284 QMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSL-LVPD-VGNCNSFMTALCK 341

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
             ++ EA      M  +   P +  +   L              L+++ MV  G  PD  
Sbjct: 342 HGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNV-MVCEGVVPDRH 400

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
            +N +     +   + +    F +M K    P  +  +T I+        + A+E +N++
Sbjct: 401 VFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHM 460

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           ++ G+ P  A  + L+ G  N   L   +    +ML++ I
Sbjct: 461 IDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGI 500



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/384 (18%), Positives = 148/384 (38%), Gaps = 40/384 (10%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F++   +G   +   ++ +++ L K    ++    +R M   GV  +  T+  +   Y  
Sbjct: 247 FYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYST 306

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           +G + E+V  F  MS   +  DV   NS ++A+C+          F + V K   PD  S
Sbjct: 307 SGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVIS 366

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  LL G+   G +   +  F  MV        HV  + T +    R   +D++L     
Sbjct: 367 YGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHV--FNTLINAYARLGMMDKSLLMFED 424

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M  +   P +  FS  +    +L     A++ ++  M+  G  PD+  Y+ + +     +
Sbjct: 425 MTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFN-HMIDTGVPPDTAVYSCLIQGQCNRR 483

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAIT------------------MLLDADEPEI--- 378
            + + ++   +M+     P  +   T+I                   ++     P +   
Sbjct: 484 DLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITF 543

Query: 379 ---------------AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
                          A+ + + +   G+ P   + N L+ G    GR+ D      +ML+
Sbjct: 544 NSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLH 603

Query: 424 RRILIYEVTMHKLKKAFYNESRSM 447
           +R+ +  V+ + +    +   R++
Sbjct: 604 KRVTLTSVSYNIILHGLFQARRTI 627



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 4/253 (1%)

Query: 194 RQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           R+  +    L    R+ +  + PD  S+  L++G+ KEG V++A+  F +M E  +    
Sbjct: 200 RRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEE--QGIMP 257

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +V+ Y + +  L + K++D+A + LR M G    P    ++  +           +V+++
Sbjct: 258 NVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVF 317

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
              M      PD    N     L K+ R+ E    F  M+    +P  ++    +     
Sbjct: 318 K-EMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYAT 376

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
           A        ++N ++  G++P     N L+     LG +       E+M  + +    +T
Sbjct: 377 AGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIIT 436

Query: 433 MHKLKKAFYNESR 445
              +  AF    R
Sbjct: 437 FSTVISAFCRLGR 449



 Score = 38.5 bits (88), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 8/140 (5%)

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
           G  PD  +YN + +   K   V +    F++M +    P  +  ++ I  L    E + A
Sbjct: 219 GLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKA 278

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT-----MH 434
             +   ++  G+ P   + N L+ G    G   +  R  +EM +  +L+ +V      M 
Sbjct: 279 ERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEM-SSSLLVPDVGNCNSFMT 337

Query: 435 KLKKAFYNESRSMRDIFDSL 454
            L K  +   +  RDIFDS+
Sbjct: 338 ALCK--HGRIKEARDIFDSM 355


>gi|326504802|dbj|BAK06692.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 522

 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 145/370 (39%), Gaps = 60/370 (16%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM- 173
           A++ +VD LG+  +F+  W  V     DG  +  TFA +   Y  AG   +AV +FD M 
Sbjct: 116 AYDAVVDALGRAHQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGLTRQAVRAFDDME 175

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +  G E D     +LL  +C+ +     A+E  N+ K   +P+   + IL+ GW K    
Sbjct: 176 AFLGREPDAQEFTTLLDTLCKYKYPKV-AVEVFNKRKYKYEPNEKMYTILIYGWCKVNRS 234

Query: 234 EEANKTFGEMVER-FEWNPEHVLAYETFLITLIR----------GKQVDEALKFLRVMKG 282
           + A K   +M++   E N   ++ Y   L  + R           + V+ A   L+ M  
Sbjct: 235 DMAQKFLKDMIDHGIEPN---IVTYNILLNGICRHASLHPDNRFDRTVNAAENLLKEMND 291

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM---MVFHGAFPDSLTYNMIFECLIKNK 339
               P +  +S    I++ +    H  +L   M   M   G  P   TY  + +CL    
Sbjct: 292 RGIEPDVTSYS----IILHVYSRAHKAELCLCMFRSMKDRGICPTVATYTSVIKCLASCG 347

Query: 340 RVHEVEKFFHEMIKNEWQPTP--LNC--------------------------ATA----- 366
           R+ + E    EM+     P+P   NC                           TA     
Sbjct: 348 RLEDAESLLGEMVSEGVCPSPATYNCFFKEYRGRKDVSGALELYNKMKAPCSPTAPDIHS 407

Query: 367 ----ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
               + M +  D  E  +E+WN + E  + P   S   L+ G     +  +  +F  EM+
Sbjct: 408 YNILLGMFIKLDRHETVMELWNDMCERAVGPDLDSYTLLVHGFCAKEKWREACQFFMEMI 467

Query: 423 NRRILIYEVT 432
            +  L  ++T
Sbjct: 468 EKGFLPQKIT 477



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 103/267 (38%), Gaps = 52/267 (19%)

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-----ENQTSRALEFL-NRV 209
            +C   + D A      M  HG+E ++V  N LL+ ICR      +N+  R +    N +
Sbjct: 227 GWCKVNRSDMAQKFLKDMIDHGIEPNIVTYNILLNGICRHASLHPDNRFDRTVNAAENLL 286

Query: 210 KKI----VDPDGDSFAILLEGWEKE----------------------------------- 230
           K++    ++PD  S++I+L  + +                                    
Sbjct: 287 KEMNDRGIEPDVTSYSIILHVYSRAHKAELCLCMFRSMKDRGICPTVATYTSVIKCLASC 346

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-- 288
           G +E+A    GEMV   E        Y  F       K V  AL+    MK   C PT  
Sbjct: 347 GRLEDAESLLGEMVS--EGVCPSPATYNCFFKEYRGRKDVSGALELYNKMKAP-CSPTAP 403

Query: 289 -LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
            +  ++  L + +KL+     ++LW+ M       PD  +Y ++       ++  E  +F
Sbjct: 404 DIHSYNILLGMFIKLDRHETVMELWNDM-CERAVGPDLDSYTLLVHGFCAKEKWREACQF 462

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDAD 374
           F EMI+  + P  +   T    L+ AD
Sbjct: 463 FMEMIEKGFLPQKITFETPYRGLIQAD 489



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 105/249 (42%), Gaps = 21/249 (8%)

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL- 277
           +FA+L   +   G   +A + F +M E F         + T L TL + K    A++   
Sbjct: 150 TFAVLARRYVAAGLTRQAVRAFDDM-EAFLGREPDAQEFTTLLDTLCKYKYPKVAVEVFN 208

Query: 278 -RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
            R  K E   P  K ++  +    K+N S  A Q +   M+ HG  P+ +TYN++   + 
Sbjct: 209 KRKYKYE---PNEKMYTILIYGWCKVNRSDMA-QKFLKDMIDHGIEPNIVTYNILLNGIC 264

Query: 337 KNKRVH----------EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           ++  +H            E    EM     +P   + +  + +   A + E+ + ++  +
Sbjct: 265 RHASLHPDNRFDRTVNAAENLLKEMNDRGIEPDVTSYSIILHVYSRAHKAELCLCMFRSM 324

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446
            + GI P  A+   ++  L + GRL D      EM++  +     T +     F+ E R 
Sbjct: 325 KDRGICPTVATYTSVIKCLASCGRLEDAESLLGEMVSEGVCPSPATYN----CFFKEYRG 380

Query: 447 MRDIFDSLE 455
            +D+  +LE
Sbjct: 381 RKDVSGALE 389


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 122/288 (42%), Gaps = 5/288 (1%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +++ L K GR  +  + V ++   G   +L TF S+ D YC  G   EAV   D M   G
Sbjct: 440 IINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVG 499

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           VE D+   N+L+   C+          F + + K V     S+ I+L G  +      A 
Sbjct: 500 VEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAK 559

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           + F EM+E       H   Y T L  L R    DEA   L  +   N    +  F+  + 
Sbjct: 560 EMFHEMIESGMAVSIH--TYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIR 617

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
            + K+     A +L+  +  + G  P  LTY ++   LIK +   + +  F  M K+   
Sbjct: 618 AMFKVGRRQEAKELFAAISTY-GLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCT 676

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           P        I MLL+  E   A    + I + GILP EA+   LL+ L
Sbjct: 677 PDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILP-EATTTSLLIYL 723



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 129/286 (45%), Gaps = 3/286 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +    ++  ++      G    M N   VM  +GV+     F ++ ++Y   G  D+
Sbjct: 287 KGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDK 346

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           +++ F+ M+  GV  D++  ++++SA CR         +F + +   V PD   ++ L++
Sbjct: 347 SLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQ 406

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G     ++ +A +   +M+ +    P  +  + + +  L +  +V E    + ++     
Sbjct: 407 GQCNRRDLVKAKELISDMLSK-GIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQ 465

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P L  F++ +D    + +   AV L D M    G  PD  TYN + +   K+ R+ +  
Sbjct: 466 RPNLITFNSLVDGYCLVGNMKEAVGLLDSMESV-GVEPDIYTYNTLVDGYCKHGRIDDAL 524

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
             F +M+      T ++    +  L  A    +A E+++ ++E+G+
Sbjct: 525 TLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGM 570



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/340 (20%), Positives = 142/340 (41%), Gaps = 10/340 (2%)

Query: 93  DSPSSAVDFFRWAGRGQ--RLSP--YAWNLMVDVLGKNGRFEQMWNAV--RVMKEDGVLS 146
           D P+ AV+ F+   R      +P  Y +N++++   +  R   +   V  R+++      
Sbjct: 94  DVPALAVELFKRMDRCACPEAAPTIYTYNILINCY-RRARRPDLGLPVFGRLLRTGLGPD 152

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           + ++ ++ D +   G+ D+A   F  M   G+  +VV  +SL++ +C+ +          
Sbjct: 153 VFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLR 212

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
             V   V P+  ++  L+ G+   G  +E+ + F EM       P+ V    +F+  L +
Sbjct: 213 QMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSL-LVPD-VGNCNSFMTALCK 270

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
             ++ EA      M  +   P +  +   L              L+++ MV  G  PD  
Sbjct: 271 HGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNV-MVCEGVVPDRH 329

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
            +N +     +   + +    F +M K    P  +  +T I+        + A+E +N++
Sbjct: 330 VFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHM 389

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           ++ G+ P  A  + L+ G  N   L   +    +ML++ I
Sbjct: 390 IDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGI 429



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/384 (18%), Positives = 148/384 (38%), Gaps = 40/384 (10%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F++   +G   +   ++ +++ L K    ++    +R M   GV  +  T+  +   Y  
Sbjct: 176 FYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYST 235

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           +G + E+V  F  MS   +  DV   NS ++A+C+          F + V K   PD  S
Sbjct: 236 SGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVIS 295

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  LL G+   G +   +  F  MV        HV  + T +    R   +D++L     
Sbjct: 296 YGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHV--FNTLINAYARLGMMDKSLLMFED 353

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M  +   P +  FS  +    +L     A++ ++  M+  G  PD+  Y+ + +     +
Sbjct: 354 MTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFN-HMIDTGVPPDTAVYSCLIQGQCNRR 412

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAIT------------------MLLDADEPEI--- 378
            + + ++   +M+     P  +   T+I                   ++     P +   
Sbjct: 413 DLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITF 472

Query: 379 ---------------AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
                          A+ + + +   G+ P   + N L+ G    GR+ D      +ML+
Sbjct: 473 NSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLH 532

Query: 424 RRILIYEVTMHKLKKAFYNESRSM 447
           +R+ +  V+ + +    +   R++
Sbjct: 533 KRVTLTSVSYNIILHGLFQARRTI 556



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 96/233 (41%), Gaps = 3/233 (1%)

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + PD  S+  L++G+ KEG V++A+  F +M E  +    +V+ Y + +  L + K++D+
Sbjct: 149 LGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEE--QGIMPNVVTYSSLINGLCKTKEMDK 206

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A + LR M G    P    ++  +           +V+++   M      PD    N   
Sbjct: 207 AERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFK-EMSSSLLVPDVGNCNSFM 265

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
             L K+ R+ E    F  M+    +P  ++    +     A        ++N ++  G++
Sbjct: 266 TALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVV 325

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           P     N L+     LG +       E+M  + +    +T   +  AF    R
Sbjct: 326 PDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGR 378



 Score = 38.5 bits (88), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 8/140 (5%)

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
           G  PD  +YN + +   K   V +    F++M +    P  +  ++ I  L    E + A
Sbjct: 148 GLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKA 207

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT-----MH 434
             +   ++  G+ P   + N L+ G    G   +  R  +EM +  +L+ +V      M 
Sbjct: 208 ERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEM-SSSLLVPDVGNCNSFMT 266

Query: 435 KLKKAFYNESRSMRDIFDSL 454
            L K  +   +  RDIFDS+
Sbjct: 267 ALCK--HGRIKEARDIFDSM 284


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 137/303 (45%), Gaps = 8/303 (2%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           R +  SP    +N+M+  L   G+ +     +  +  D    ++ T+  + ++    G  
Sbjct: 185 RSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGV 244

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           DEA+   D M   G++ D+   N+++  +C+ E    RA E +  ++ K  +PD  S+ I
Sbjct: 245 DEALKLMDEMLSRGLKPDMFTYNTIIRGMCK-EGMVDRAFEMVRNLELKGSEPDVISYNI 303

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL     +G  EE  K   +M    + +P +V+ Y   + TL R  +++EA+  L++MK 
Sbjct: 304 LLRALLNQGKWEEGEKLMTKMFSE-KCDP-NVVTYSILITTLCRDGKIEEAMNLLKLMKE 361

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +   P    +   +    +      A++  +  M+  G  PD + YN +   L KN +  
Sbjct: 362 KGLTPDAYSYDPLIAAFCREGRLDVAIEFLET-MISDGCLPDIVNYNTVLATLCKNGKAD 420

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +  + F ++ +    P   +  T  + L  + +   A+ +   ++ NGI P E + N ++
Sbjct: 421 QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMI 480

Query: 403 VGL 405
             L
Sbjct: 481 SCL 483



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 148/338 (43%), Gaps = 11/338 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS---IFDSYCGAGKY 163
           RG +   + +N ++  + K G  ++ +  VR ++  G  S P   S   +  +    GK+
Sbjct: 257 RGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKG--SEPDVISYNILLRALLNQGKW 314

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           +E       M     + +VV  + L++ +CR + +   A+  L  +K K + PD  S+  
Sbjct: 315 EEGEKLMTKMFSEKCDPNVVTYSILITTLCR-DGKIEEAMNLLKLMKEKGLTPDAYSYDP 373

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+  + +EG ++ A +    M+   +     ++ Y T L TL +  + D+AL+    +  
Sbjct: 374 LIAAFCREGRLDVAIEFLETMIS--DGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGE 431

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
             C P    ++     L    D   A+ +  + M+ +G  PD +TYN +  CL +   V 
Sbjct: 432 VGCSPNSSSYNTMFSALWSSGDKIRALHMI-LEMMSNGIDPDEITYNSMISCLCREGMVD 490

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E  +   +M   E+ P+ +     +     A   E AI +   ++ NG  P E +   L+
Sbjct: 491 EAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLI 550

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
            G+   G  ++    A +++ R   I E +  +L + F
Sbjct: 551 EGIGFAGYRAEAMELANDLV-RIDAISEYSFKRLHRTF 587



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 124/305 (40%), Gaps = 37/305 (12%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           IF   C +G Y E++   + M   G   DV+    L+       N   +A+  +  ++K 
Sbjct: 95  IFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRN-IPKAVRVMEILEKF 153

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PD  ++  L+ G+ K   +++A +    M  + +++P+ V  Y   + +L    ++D 
Sbjct: 154 GQPDVFAYNALINGFCKMNRIDDATRVLDRMRSK-DFSPDTV-TYNIMIGSLCSRGKLDL 211

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV--------------- 317
           ALK L  +  +NC PT+  ++  ++  +       A++L D M+                
Sbjct: 212 ALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIR 271

Query: 318 -------------------FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
                                G+ PD ++YN++   L+   +  E EK   +M   +  P
Sbjct: 272 GMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDP 331

Query: 359 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 418
             +  +  IT L    + E A+ +   + E G+ P   S + L+      GRL     F 
Sbjct: 332 NVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFL 391

Query: 419 EEMLN 423
           E M++
Sbjct: 392 ETMIS 396



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 137/347 (39%), Gaps = 39/347 (11%)

Query: 135 AVRVMK---EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           AVRVM+   + G   +  + ++ + +C   + D+A    D M       D V  N ++ +
Sbjct: 143 AVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGS 202

Query: 192 ICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER---- 246
           +C +  +   AL+ LN+ +     P   ++ IL+E    EG V+EA K   EM+ R    
Sbjct: 203 LCSR-GKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKP 261

Query: 247 --FEWNP---------------------------EHVLAYETFLITLIRGKQVDEALKFL 277
             F +N                              V++Y   L  L+   + +E  K +
Sbjct: 262 DMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLM 321

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M  E C P +  +S  +  L +      A+ L  +M    G  PD+ +Y+ +     +
Sbjct: 322 TKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE-KGLTPDAYSYDPLIAAFCR 380

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             R+    +F   MI +   P  +N  T +  L    + + A+EI+  + E G  P  +S
Sbjct: 381 EGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSS 440

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            N +   L + G          EM++  I   E+T + +      E 
Sbjct: 441 YNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREG 487



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 2/159 (1%)

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           R     E+L  L  M  +   P +   +  +     L +   AV++ +I+  F    PD 
Sbjct: 101 RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKF--GQPDV 158

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
             YN +     K  R+ +  +    M   ++ P  +     I  L    + ++A+++ N 
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           +L +   P   +   L+      G + +  +  +EML+R
Sbjct: 219 LLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSR 257


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 139/303 (45%), Gaps = 12/303 (3%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
           AG G       +++++D L K GR E     + V  + G+ L +  F+S  D+Y   G  
Sbjct: 334 AGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDL 393

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE----FLNRVKKIVDPDGDS 219
              +  +  M   G+  +VV+ + L+   C    Q  R LE    F+  +K   +P   +
Sbjct: 394 GRVIQIYKRMLNEGISPNVVSCSILIKGFC----QNGRILEACGLFVQILKLGFEPSILT 449

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           ++ L+ G+ K GN+ +    + +M+++    P+ ++ Y   +  L +   V +AL+F   
Sbjct: 450 YSALIAGFCKSGNLRDGFYLYEDMIKK-RCEPDTIV-YSVLINGLCKQGLVGDALRFFFQ 507

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
                  P +   +  LD   +L     A++++ +M + +    D++TY ++ +   +  
Sbjct: 508 AVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIK-ADTVTYTILIKGAAQFG 566

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           RV E    F +M+K +++P  +   T I  L    +    + I++++ +N + P  A  N
Sbjct: 567 RVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYN 626

Query: 400 ELL 402
            L+
Sbjct: 627 VLI 629



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 156/350 (44%), Gaps = 18/350 (5%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDS 156
           FF+   RG   + +  N ++D      R + +  A++V    G+L++     T+  +   
Sbjct: 505 FFQAVNRGLSPNVFTLNTLLDSFC---RLKCIVGAMKVYYLMGMLNIKADTVTYTILIKG 561

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
               G+ DEA+M F  M     + DV+   +L+  +C+ +  ++    F    K  V PD
Sbjct: 562 AAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPD 621

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALK 275
              + +L+    +EG++E A   F  +VER    P+  V  + T +      K++D+A++
Sbjct: 622 IAIYNVLINMHSREGHLEAALGLFVHVVER---GPKPDVFTFNTMICCYCNFKRLDDAVQ 678

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
               M  E   P    F+  +D   +      A+ ++  M+   G  P+ +TY+ +    
Sbjct: 679 LFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLE-EGPEPNLVTYSCLIHGY 737

Query: 336 IKNKRVHEVE-KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
            K++ + E   K ++EM++N   P  ++ +  I  L      + A   +   L+  +LP 
Sbjct: 738 FKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPD 797

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEM-LNR----RILIYEVTMHKLKKA 439
             +   L+ G   +GRL++     + M LNR    R L   +  ++LKKA
Sbjct: 798 VIAYTILIRGYCKVGRLTEAMMLYDNMLLNRLTPDRFLERTLEEYQLKKA 847



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 166/389 (42%), Gaps = 43/389 (11%)

Query: 80  TPDL-VHEVLQLSYDSPSSAVDFFRWAGR---GQRLSPYAWN--LMVDVLGKN------- 126
           TPDL V+ +L          +D    AGR   GQRL   A +  + +DV+G +       
Sbjct: 339 TPDLIVYSIL----------IDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYV 388

Query: 127 -----GRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
                GR  Q++   R++ E    ++ + + +   +C  G+  EA   F  +   G E  
Sbjct: 389 KIGDLGRVIQIYK--RMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPS 446

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           ++  ++L++  C+  N       + + +KK  +PD   +++L+ G  K+G V +A + F 
Sbjct: 447 ILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFF 506

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           + V R   +P +V    T L +  R K +  A+K   +M   N    +K  +    IL+K
Sbjct: 507 QAVNR-GLSP-NVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLN----IKADTVTYTILIK 560

Query: 302 LNDSTHAVQLWDIMMVFHGAF-----PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
              +    ++ + +M+F         PD +TY  + + L K K+       F  M KN  
Sbjct: 561 --GAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAV 618

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
            P        I M       E A+ ++ +++E G  P   + N ++    N  RL D  +
Sbjct: 619 APDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQ 678

Query: 417 FAEEMLNRRILIYEVTMHKLKKAFYNESR 445
              +M + ++    +T   L  AF  E R
Sbjct: 679 LFAKMTSEQLRPNAITFTILIDAFCREGR 707


>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 484

 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  + +S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHGAKNS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + ++L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 IMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG+N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VITYNTMINGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  + G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGY-GIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPT 289



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 11/226 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVER------TIKSYDAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++ I
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYI 286



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 118/302 (39%), Gaps = 38/302 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + + +SP    +N M++   +  + E+       MK   +  ++ T+ ++   Y    + 
Sbjct: 177 KSREISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQV 236

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS-FAI 222
           D+A+   + M  +G++ + +  ++LL  +C  E  +         V K + P  +S F  
Sbjct: 237 DDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMR 296

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+    K GN++ A      M+ R    P     Y   +    +  Q D+A+K L  +  
Sbjct: 297 LISSHCKVGNLDAAADVLKAMI-RLSV-PTEAGHYGVLIENYCKAGQYDQAVKLLDKLIE 354

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +             DI+V+   + H                +   YN I E L  N +  
Sbjct: 355 K-------------DIIVRPQSTLHM---------------EPSAYNPIVEYLCNNGQTS 386

Query: 343 EVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
           + E    +++K   Q PT LN  T I        P+ A E+   +L   +   E SA + 
Sbjct: 387 KAEALVRQLMKLGVQDPTALN--TLIRGHSQEGSPDSAFELLKIMLRRKV-DSEKSAYDS 443

Query: 402 LV 403
           LV
Sbjct: 444 LV 445


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 90/403 (22%), Positives = 169/403 (41%), Gaps = 20/403 (4%)

Query: 42  THLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDF 101
            H     +  + R++ E+     S ++ +     G +    L+ E ++L      S VD 
Sbjct: 224 AHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELK----RSMVD- 278

Query: 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGA 160
                +G     Y ++++++      R  +    +  M + G+   P T+ ++ D +   
Sbjct: 279 -----KGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQ 333

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDS 219
           G  ++A    D M   G+E +++  N+LL+ +C+   +  +ALE +  + +K V+PD  +
Sbjct: 334 GDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKA-GKMEKALEIMQEMMEKGVEPDSQT 392

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +++L+EG  +  N+  A +   EM +R +  P  VL Y   +  L R   +      LR 
Sbjct: 393 YSLLIEGHCRGQNMARAFELLDEMKKR-KLAPT-VLTYSVIINGLCRCGNLQGTNAILRE 450

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M      P    ++  +    K      +  + + M    G  PD   YN +     K K
Sbjct: 451 MVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMRE-QGILPDVFCYNSLIIGFCKAK 509

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           R+ E   +  EM++   +P        I     A E EIA   +N +L  G+LP      
Sbjct: 510 RMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYT 569

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRIL----IYEVTMHKLKK 438
            L+ G    G +++       +L+RR+L     Y V +H L +
Sbjct: 570 ALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSR 612



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 140/326 (42%), Gaps = 9/326 (2%)

Query: 125 KNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K G   + ++  R +    VL  + T++ +       GK  EA   F  +   G+  +  
Sbjct: 577 KEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAF 636

Query: 184 AVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
             NSL+S  C+Q N  + S+ LE +    K ++PD  ++ IL++G  K G +E A   F 
Sbjct: 637 TYNSLISGSCKQGNVDKASQLLEEM--CIKGINPDIVTYNILIDGLCKAGEIERAKNLFD 694

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           + +E     P + + Y   +    + K    A + L  M      P    ++  L+   K
Sbjct: 695 D-IEGRGLTP-NCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCK 752

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                 A+ L+  M+     F  ++++N + E   K+ ++ E      EMI+ ++ P  +
Sbjct: 753 EEKFEKALDLFQEML--EKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHV 810

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
              + I     A     A  +W  + E  ++P   +   LL G  N+G +S+V    EEM
Sbjct: 811 TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 870

Query: 422 LNRRILIYEVTMHKLKKAFYNESRSM 447
           + + I   ++T + +  A+  E   M
Sbjct: 871 VAKGIEPDKMTYYVMIDAYCREGNVM 896



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 131/279 (46%), Gaps = 11/279 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++D L K G  E+  N    ++  G+  +  T+A++ D YC +     A    + M 
Sbjct: 673 YNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEML 732

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           + GV  D    N +L+  C++E +  +AL+    + +       SF  L+EG+ K G ++
Sbjct: 733 LRGVPPDAFIYNVILNFCCKEE-KFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQ 791

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EAN    EM+E+ ++ P HV  Y + +    +   + EA +    M+  N  PT K +++
Sbjct: 792 EANHLLEEMIEK-QFIPNHV-TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTS 849

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            L     + + +    L++  MV  G  PD +TY ++ +   +   V E  K   E++  
Sbjct: 850 LLHGYHNIGNMSEVSALFE-EMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEIL-- 906

Query: 355 EWQPTPLNCA---TAITMLLDADEPEIAIEIWNYILENG 390
             +  P++ A     I  L   +E    +++ N I E+G
Sbjct: 907 -VKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESG 944



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/416 (17%), Positives = 157/416 (37%), Gaps = 76/416 (18%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + ++L+P    ++++++ L + G  +     +R M  +G+  +   + ++  ++   G+ 
Sbjct: 417 KKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRV 476

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           +E+ M  + M   G+  DV   NSL+   C+ +         +  +++ + P+  ++   
Sbjct: 477 EESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAF 536

Query: 224 LEGWEKEGNVEEANKTFGEMVE------------------------------RFEWNP-- 251
           ++G+ K G +E A++ F EM+                               RF  +   
Sbjct: 537 IDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRV 596

Query: 252 -EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
            + V  Y   +  L R  ++ EA      ++ +   P    +++ +    K  +   A Q
Sbjct: 597 LQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQ 656

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           L + M +  G  PD +TYN++ + L K   +   +  F ++      P  +  A  +   
Sbjct: 657 LLEEMCI-KGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGY 715

Query: 371 LDADEPEIAIEIWNYILENGILP----------------------------LE------A 396
             +  P  A ++   +L  G+ P                            LE       
Sbjct: 716 CKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV 775

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM-----HKLKKAFYNESRSM 447
           S N L+ G    G+L +     EEM+ ++ +   VT      H  K     E++ +
Sbjct: 776 SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRL 831



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 8/218 (3%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDS 156
           A+D F+        S  ++N +++   K+G+ ++  + +  M E   + +  T+ S+ D 
Sbjct: 759 ALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDH 818

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
            C AG   EA   +  M    V        SLL       N +  +  F   V K ++PD
Sbjct: 819 NCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPD 878

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++ ++++ + +EGNV EA K   E++   +  P  V AY+  +  L + ++  E LK 
Sbjct: 879 KMTYYVMIDAYCREGNVMEACKLKDEIL--VKGMPMSVAAYDALIQALCKKEEFFEVLKL 936

Query: 277 LRVMKGENCF----PTLKFFSNALDILVKLNDSTHAVQ 310
           L  + GE+ F    PT    +    I   ++++   ++
Sbjct: 937 LNEI-GESGFRLGLPTCSVIARGFQIAGNMDEAAEVLR 973



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 148/368 (40%), Gaps = 52/368 (14%)

Query: 79  PTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAV 136
           P  DL+  +++ S DSP + +       R    SP +  +++++D   K G   +  N  
Sbjct: 110 PASDLIKCIIRNS-DSPLAVLGSIVKCYRSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVF 168

Query: 137 RVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
              K  +   SL +  S+        K +     FD M  H V  DV    +++SA C  
Sbjct: 169 LGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHC-- 226

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                                            K GNV++A +   EM E+   +P +++
Sbjct: 227 ---------------------------------KVGNVKDAKRVLLEMGEK-GCSP-NLV 251

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK---LNDSTHAVQLW 312
            Y   +  L R + +DEA++  R M  +   P L  +    DIL+    +   +   +L 
Sbjct: 252 TYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTY----DILINGFCMEKRSREAKLM 307

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
            + M+  G  P+ +TYN + +  ++   + +  +   EM+    +   +   T +  +  
Sbjct: 308 LLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCK 367

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILI 428
           A + E A+EI   ++E G+ P   + + L+ G      ++      +EM  R+    +L 
Sbjct: 368 AGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLT 427

Query: 429 YEVTMHKL 436
           Y V ++ L
Sbjct: 428 YSVIINGL 435



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 8/122 (6%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  + D+YC  G   EA    D + + G+   V A ++L+ A+C++E +    L+ LN 
Sbjct: 881 TYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKE-EFFEVLKLLNE 939

Query: 209 VKKIVDPDG-DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + +     G  + +++  G++  GN++EA +    MV +F W     ++  T L  L+ G
Sbjct: 940 IGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMV-KFGW-----VSNTTSLGDLVDG 993

Query: 268 KQ 269
            Q
Sbjct: 994 NQ 995


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 140/314 (44%), Gaps = 7/314 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++  L  +G+ EQ       MK       + T+ ++ D+ C A + +E    F+ M 
Sbjct: 188 YNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMR 247

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             G   +V+  ++L+  +CR   +  +ALE F + ++    P+  ++  L+ G  +   V
Sbjct: 248 AAGYVPNVITFSTLIHGLCRT-GELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKV 306

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PTLKFF 292
            +A + F +M +     P   +AY + +    +   +DEA K  R M G     PT+  F
Sbjct: 307 IQARELFEKMTQ--ACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTF 364

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +D   KL     A +L   M    G   DS TY ++   L +  ++ E  + + +M 
Sbjct: 365 NTLIDGFCKLGKLGRANELVAEMGT-KGLAADSCTYRILIAGLSRATKLDEALEVYKQMR 423

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           + ++   P++C + +  L      + A  ++    ++G +P   +   L   L  LGR+ 
Sbjct: 424 EKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVE 483

Query: 413 DVRRFAEEMLNRRI 426
           D ++  E    R I
Sbjct: 484 DAQKLMEPAKARDI 497



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 123/307 (40%), Gaps = 36/307 (11%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++SI  S     K +E+    + M   G   DV A N ++    R  N       + + 
Sbjct: 12  TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 71

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW------------------- 249
           V+    PD  S+ IL+ G  K G ++E+ K   EMV R +                    
Sbjct: 72  VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRV 131

Query: 250 ---------------NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
                          +P+ ++ YE  ++ L +  +V +A +  + M    C P +  ++ 
Sbjct: 132 DHASSLFDEMIRGGHHPDRLMFYE-LILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNV 190

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            L  L        A  L+   M  H   PD +TYN + + + K +RV E  K F  M   
Sbjct: 191 LLHGLCSSGQLEQANTLF-AEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAA 249

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
            + P  +  +T I  L    E E A+E++  +LE G  P + +   L+ GL    ++   
Sbjct: 250 GYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQA 309

Query: 415 RRFAEEM 421
           R   E+M
Sbjct: 310 RELFEKM 316


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 140/312 (44%), Gaps = 7/312 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  +VD L K GR +     +  M++ G   ++ T+  I +  C   K DEA    + M+
Sbjct: 83  YTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMA 142

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           + G   DVV  NS +  +C+  ++   A +FL R+   V PD  S+  ++ G  K G+++
Sbjct: 143 VRGYFPDVVTYNSFIKGLCKC-DRVDEARKFLARMP--VTPDVVSYTTVINGLCKSGDLD 199

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A++   +M  R    P+ V+ Y + +    +G +V+ A+  L  M    C P +  +++
Sbjct: 200 SASRMLDQMTNR-GCTPD-VVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNS 257

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            L  L +L     A  +  + M   G  PD ++YN   + L K +RV + +  F  M++ 
Sbjct: 258 LLGALHRLGHIGKAEDML-VEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVER 316

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
              P   + +  +  L    E + AI +     E   +        LL GL   GR  + 
Sbjct: 317 GCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEA 376

Query: 415 RRFAEEMLNRRI 426
                ++L+ +I
Sbjct: 377 CALFSKVLDEKI 388



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 101/232 (43%), Gaps = 6/232 (2%)

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K   PD  +FAILL G  +   +E+A +  G M E     P+  + Y   +    + K
Sbjct: 2   IDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKE-MGCVPDDAI-YNALISGYSKAK 59

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
              +A KFL  M   +C PT+  ++N +D L K   +  AV+L D M    G  P+  TY
Sbjct: 60  DFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRD-KGCSPNIYTY 118

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N+I E L + +++ E +K   EM    + P  +   + I  L   D  +   E   ++  
Sbjct: 119 NVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVD---EARKFLAR 175

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
             + P   S   ++ GL   G L    R  ++M NR      VT   L   F
Sbjct: 176 MPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGF 227



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 145/331 (43%), Gaps = 15/331 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++    K   F Q +  +  M ++  L ++ T+ +I D  C AG+  +AV   D M 
Sbjct: 48  YNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMR 107

Query: 175 MHGVEQDVVAVNSLLSAIC--RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
             G   ++   N ++  +C  R+ ++  + LE +    +   PD  ++   ++G  K   
Sbjct: 108 DKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEM--AVRGYFPDVVTYNSFIKGLCKCDR 165

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V+EA K     + R    P+ V++Y T +  L +   +D A + L  M    C P +  +
Sbjct: 166 VDEARK----FLARMPVTPD-VVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTY 220

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           S+ +D   K  +   A+ L D M+   G  P+ + YN +   L +   + + E    EM 
Sbjct: 221 SSLIDGFCKGGEVERAMGLLDSMLKL-GCRPNMVAYNSLLGALHRLGHIGKAEDMLVEME 279

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +  + P  ++    I  L  A+  + A  +++ ++E G  P  +S + L+  L     L 
Sbjct: 280 RRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELD 339

Query: 413 DVRRFAEEMLNRR----ILIYEVTMHKLKKA 439
           D     E+   +     IL+Y V +  L K 
Sbjct: 340 DAITLVEQAREKYQIVDILLYTVLLDGLCKG 370



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 137/357 (38%), Gaps = 82/357 (22%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++  +++ L K+G  +     +  M   G    + T++S+ D +C  G+ + A+   D M
Sbjct: 184 SYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSM 243

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G   ++VA NSLL A+ R      +A + L  + ++   PD  S+   ++G  K   
Sbjct: 244 LKLGCRPNMVAYNSLLGALHRL-GHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAER 302

Query: 233 VEEANKTFGEMVERF---------------------------------EWNPEHVLAYET 259
           V++A   F  MVER                                  ++    +L Y  
Sbjct: 303 VKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTV 362

Query: 260 FLITLIRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL------- 311
            L  L +G + DEA   F +V+  + C P + F++  LD   K      A+Q+       
Sbjct: 363 LLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLER 422

Query: 312 -------WDIM-------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
                  W+I+                   MV  G  PD +TY  + + + K  +     
Sbjct: 423 NCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAAL 482

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA--------IEIWNYIL----ENG 390
           + F E +K    P  +  +  IT L+  +  E A        + +WN ++    ENG
Sbjct: 483 ELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLDVALWNAMILGYAENG 539



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 129/316 (40%), Gaps = 15/316 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TFA +    C + + ++A      M   G   D    N+L+S   + ++   +A +FL  
Sbjct: 12  TFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD-FGQAFKFLAE 70

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            VK    P   ++  +++G  K G  ++A K   EM  R +    ++  Y   +  L   
Sbjct: 71  MVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEM--RDKGCSPNIYTYNVIVEGLCEE 128

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           +++DEA K L  M     FP +  +++ +  L K +    A +    M V     PD ++
Sbjct: 129 RKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPV----TPDVVS 184

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y  +   L K+  +    +   +M      P  +  ++ I       E E A+ + + +L
Sbjct: 185 YTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSML 244

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNE 443
           + G  P   + N LL  L  LG +        EM  R     ++ Y   +  L KA    
Sbjct: 245 KLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKA--ER 302

Query: 444 SRSMRDIFDSL-ERRC 458
            +  + +FD + ER C
Sbjct: 303 VKKAKAVFDRMVERGC 318



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 1/166 (0%)

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M  ++C P    F+  L  L + N    A QL   M    G  PD   YN +     K K
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEM-GCVPDDAIYNALISGYSKAK 59

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
              +  KF  EM+KN   PT +     +  L  A   + A+++ + + + G  P   + N
Sbjct: 60  DFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYN 119

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            ++ GL    +L + ++  EEM  R      VT +   K      R
Sbjct: 120 VIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDR 165


>gi|357148528|ref|XP_003574800.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial-like [Brachypodium distachyon]
          Length = 464

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 141/346 (40%), Gaps = 9/346 (2%)

Query: 81  PDLVHEVLQLSYDS-PSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVR 137
           PDL   V++ +  + P  A  F  W       SP A  ++ ++  L +   F  +W    
Sbjct: 82  PDLALRVIKAAAPAEPLHAARFLAWLRAKPNFSPSAEHFDALLLPLARARLFTHLWTQAS 141

Query: 138 VMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
            M+  G+ LS  TF+++  SY  +   ++AV  F+ +   G  Q     N+LL A+C   
Sbjct: 142 DMRALGLPLSPATFSAVISSYGHSRLPEQAVEVFNRLPHFGCPQTTEVYNALLDALCSNG 201

Query: 197 NQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           N    A + L R+ +K V PD  +F+ L++ W   G + EA     +M  R    P  V 
Sbjct: 202 NFAG-AYKLLRRMARKGVAPDRATFSTLVDAWCASGKLREAQAFLDDMASRGFRPP--VR 258

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
             +  +  L+R  +++EA  F      E   P +  F++    L    D   AV L    
Sbjct: 259 GRDLLVDGLVRAGRLEEAKAFAVRFTKEGVLPDVATFNSLAQALCDAGDVKFAVGLLADA 318

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
               G  PD  TY ++   + K  ++ E  + F+  +++  +P P   A  +  L  A  
Sbjct: 319 SS-RGLCPDISTYKVMLPAVAKAGQIEEAFRLFYAAVEDGHRPFPSLYAAIVKALCKAGR 377

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
              A   +  +   G  P       L+      GR  D   +  EM
Sbjct: 378 FGDAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRFLDAANYLVEM 423


>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Glycine max]
          Length = 682

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 162/368 (44%), Gaps = 47/368 (12%)

Query: 112 SPYAWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           S  ++N+M+  L K GRF +   +W   R+ K +    L T++++      AG    A  
Sbjct: 253 SVVSYNVMISGLCKCGRFSEGLEIWE--RMKKNERKCDLFTYSALIHGLSEAGDLGGARK 310

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            ++ M   GV  DVV  N++L+ +C+  N      E    + K    +  S+ I L+G  
Sbjct: 311 VYEEMVGRGVRPDVVTCNAMLNGLCKAGN-VEECFELWEEMGKCSLRNVRSYNIFLKGLF 369

Query: 229 KEGNVEEA-----------NKTFGEMVERFEWN------------PEHV--------LAY 257
           + G V++A           + T+G +V    WN             EH          AY
Sbjct: 370 ENGKVDDAMMLWDGLLEADSATYGVVVHGLCWNGYVNRALQVLEEAEHREGGMDVDEFAY 429

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL----VKLNDSTHAVQLWD 313
            + +  L +  ++DEA   + +M    C    KF S+  ++L    VK +    AV+++ 
Sbjct: 430 SSLINALCKEGRLDEADGVVELMNKRGC----KFNSHVCNVLIDGFVKHSKLDSAVKVFR 485

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
             M   G     ++YN++   L++ +R  E     +EM++  W+P  +  +T I  L ++
Sbjct: 486 -EMSGKGCSLTVVSYNILINGLLRAERFREAYDCVNEMLEKGWKPDIITYSTLIGGLYES 544

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 433
           +  + A+ +W+  L+ G  P     N ++  L + G++ D  +    +  ++  +  VT 
Sbjct: 545 NMMDAALRLWHQFLDTGHKPDIIMYNIVIHRLCSSGKVEDALQLYSTLRQKKC-VNLVTH 603

Query: 434 HKLKKAFY 441
           + + + FY
Sbjct: 604 NTIMEGFY 611



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 153/334 (45%), Gaps = 23/334 (6%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL--PTFASIFDSYCGAGKYDEAVMSFDV 172
           ++N+ +  L +NG+ +       +M  DG+L     T+  +    C  G  + A+   + 
Sbjct: 360 SYNIFLKGLFENGKVDDA-----MMLWDGLLEADSATYGVVVHGLCWNGYVNRALQVLEE 414

Query: 173 MSMH--GVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
                 G++ D  A +SL++A+C++   ++    +E +N  K+    +     +L++G+ 
Sbjct: 415 AEHREGGMDVDEFAYSSLINALCKEGRLDEADGVVELMN--KRGCKFNSHVCNVLIDGFV 472

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K   ++ A K F EM  +       V++Y   +  L+R ++  EA   +  M  +   P 
Sbjct: 473 KHSKLDSAVKVFREMSGK--GCSLTVVSYNILINGLLRAERFREAYDCVNEMLEKGWKPD 530

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  +S  +  L + N    A++LW    +  G  PD + YN++   L  + +V +  + +
Sbjct: 531 IITYSTLIGGLYESNMMDAALRLWH-QFLDTGHKPDIIMYNIVIHRLCSSGKVEDALQLY 589

Query: 349 HEMIKNEWQPTPLNCATAITML---LDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             +     Q   +N  T  T++         E+A +IW +ILE+ + P   S N  L GL
Sbjct: 590 STLR----QKKCVNLVTHNTIMEGFYKVGNCEMASKIWAHILEDELQPDIISYNITLKGL 645

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
            + GR++D   F ++ L R  L   +T + L +A
Sbjct: 646 CSCGRVTDAVGFLDDALVRGFLPTAITWNILVRA 679



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 121/276 (43%), Gaps = 13/276 (4%)

Query: 152 SIFDSYCGAGKYDEAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
           ++  +Y      +EA+  F  M  + G    + + N+LL+A   + +Q +RA  F    +
Sbjct: 82  TLLKAYAKTRMPNEALHVFQTMPHVFGCSPTIRSFNTLLNAFV-ESHQWARAENFFKYFE 140

Query: 211 KI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW----NPEHVLAYETFLITLI 265
              V P+ +++ +L++   K+G  E+       M     W    +P+ +  Y T +  + 
Sbjct: 141 AARVSPNVETYNVLMKVMCKKGEFEKGRGLLTWM-----WGAGMSPDRI-TYGTLIGGVA 194

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           +   +  AL+    M+     P +  ++  +D   K  D   A ++W+ ++     FP  
Sbjct: 195 KSGDLGFALEVFDEMRERGVEPDVVCYNMIIDGFFKRGDFVKAGEMWERLLREELVFPSV 254

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           ++YN++   L K  R  E  + +  M KNE +      +  I  L +A +   A +++  
Sbjct: 255 VSYNVMISGLCKCGRFSEGLEIWERMKKNERKCDLFTYSALIHGLSEAGDLGGARKVYEE 314

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           ++  G+ P   + N +L GL   G + +     EEM
Sbjct: 315 MVGRGVRPDVVTCNAMLNGLCKAGNVEECFELWEEM 350



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 111/259 (42%), Gaps = 27/259 (10%)

Query: 96  SSAVDFFRWAGRGQRLSPY--AWNLMVDVLGKNGRFEQ-------MWNAVRVMKEDGVLS 146
           + A +FF++     R+SP    +N+++ V+ K G FE+       MW A   M  D +  
Sbjct: 130 ARAENFFKYF-EAARVSPNVETYNVLMKVMCKKGEFEKGRGLLTWMWGAG--MSPDRI-- 184

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
             T+ ++      +G    A+  FD M   GVE DVV  N ++    ++ +   +A E  
Sbjct: 185 --TYGTLIGGVAKSGDLGFALEVFDEMRERGVEPDVVCYNMIIDGFFKRGDFV-KAGEMW 241

Query: 207 NRV--KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH--VLAYETFLI 262
            R+  +++V P   S+ +++ G  K G   E      E+ ER + N     +  Y   + 
Sbjct: 242 ERLLREELVFPSVVSYNVMISGLCKCGRFSEGL----EIWERMKKNERKCDLFTYSALIH 297

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
            L     +  A K    M G    P +   +  L+ L K  +     +LW+ M     + 
Sbjct: 298 GLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLNGLCKAGNVEECFELWEEMG--KCSL 355

Query: 323 PDSLTYNMIFECLIKNKRV 341
            +  +YN+  + L +N +V
Sbjct: 356 RNVRSYNIFLKGLFENGKV 374



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 92/183 (50%), Gaps = 5/183 (2%)

Query: 97  SAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           SAV  FR  +G+G  L+  ++N++++ L +  RF + ++ V  M E G    + T++++ 
Sbjct: 479 SAVKVFREMSGKGCSLTVVSYNILINGLLRAERFREAYDCVNEMLEKGWKPDIITYSTLI 538

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
                +   D A+  +      G + D++  N ++  +C    +   AL+  + +++   
Sbjct: 539 GGLYESNMMDAALRLWHQFLDTGHKPDIIMYNIVIHRLC-SSGKVEDALQLYSTLRQKKC 597

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
            +  +   ++EG+ K GN E A+K +  ++E  E  P+ +++Y   L  L    +V +A+
Sbjct: 598 VNLVTHNTIMEGFYKVGNCEMASKIWAHILED-ELQPD-IISYNITLKGLCSCGRVTDAV 655

Query: 275 KFL 277
            FL
Sbjct: 656 GFL 658


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 123/269 (45%), Gaps = 6/269 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +  G G   +   +  ++  L   GR+++ +  +  MK   ++  L  F+ + D  C 
Sbjct: 254 FCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCK 313

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC-RQENQTSRALEFLNRVKKIVDPDGD 218
            G+  EA +    M+  GVE DV   N+L++  C R E   +R + F   + K   PD  
Sbjct: 314 EGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKV-FEVMISKGRMPDVF 372

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           SF+IL+ G+ K   ++EA + F EM  R    P+ V +Y T +  L + ++  EA +  +
Sbjct: 373 SFSILVNGYCKAKRIDEAKQLFDEMTHR-GLIPDTV-SYNTLISGLCQARRPLEAEELFK 430

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M      P L  +S  LD L K      A+ L+   M   G  PD +TYN++ + + K 
Sbjct: 431 DMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFR-AMENSGLKPDLVTYNIMIDGMCKY 489

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
            +  +  + F E+     QP    C   I
Sbjct: 490 GKFKDARELFAELSVKGLQPNNWVCTPTI 518



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 145/327 (44%), Gaps = 7/327 (2%)

Query: 98  AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFD 155
           A++ F     RG + + +++++++  L + G+  ++   +  MK  G    +  + +I D
Sbjct: 180 AIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVD 239

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
             C     +EAV  F  M   G+   VV   SL+  + R   +   A   LN +K   + 
Sbjct: 240 RLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGL-RNLGRWKEAFGLLNEMKGGNIM 298

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  +F++L++   KEG V EA      M E     P+ V  Y T +       +V EA 
Sbjct: 299 PDLVAFSVLIDIMCKEGEVSEARVILKTMTE-MGVEPD-VATYNTLMNGYCLRMEVVEAR 356

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           K   VM  +   P +  FS  ++   K      A QL+D  M   G  PD+++YN +   
Sbjct: 357 KVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFD-EMTHRGLIPDTVSYNTLISG 415

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L + +R  E E+ F +M  N + P  +  +  +  L      + A+ ++  +  +G+ P 
Sbjct: 416 LCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPD 475

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEM 421
             + N ++ G+   G+  D R    E+
Sbjct: 476 LVTYNIMIDGMCKYGKFKDARELFAEL 502



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 115/258 (44%), Gaps = 5/258 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+++ + +C  GK   A+  FDVM   G + +V + + ++  +CR   +T+  ++ L  
Sbjct: 163 TFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRV-GKTTEVIKLLEH 221

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K +  +PD   +  +++   K+  V EA   F +M  +       V+ Y + +  L   
Sbjct: 222 MKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKM--KGTGILPTVVTYTSLIHGLRNL 279

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +  EA   L  MKG N  P L  FS  +DI+ K  + + A  +   M    G  PD  T
Sbjct: 280 GRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEM-GVEPDVAT 338

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +         V E  K F  MI     P   + +  +     A   + A ++++ + 
Sbjct: 339 YNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMT 398

Query: 388 ENGILPLEASANELLVGL 405
             G++P   S N L+ GL
Sbjct: 399 HRGLIPDTVSYNTLISGL 416



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 118/280 (42%), Gaps = 5/280 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +F +      Y   V     M M G+  DV+++  L++  CR           
Sbjct: 90  SIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRL-CHVDYGFSV 148

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+ ++P+  +F+ L+ G+  EG +  A + F  MV R  + P +V +Y   +  L
Sbjct: 149 LGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVAR-GYKP-NVHSYSIIIKGL 206

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            R  +  E +K L  MK   C P +  ++  +D L K      AV ++   M   G  P 
Sbjct: 207 CRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIF-CKMKGTGILPT 265

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TY  +   L    R  E     +EM      P  +  +  I ++    E   A  I  
Sbjct: 266 VVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILK 325

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            + E G+ P  A+ N L+ G      + + R+  E M+++
Sbjct: 326 TMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISK 365



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 43/177 (24%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE---- 204
           +F+ + + YC A + DEA   FD M+  G+  D V+ N+L+S +C    Q  R LE    
Sbjct: 373 SFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLC----QARRPLEAEEL 428

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL--------- 255
           F +       P+  +++ILL+   K+G +++A   F  M E     P+ V          
Sbjct: 429 FKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAM-ENSGLKPDLVTYNIMIDGMC 487

Query: 256 -------AYETFLITLIRGKQ------------------VDEALKFLRVMKGENCFP 287
                  A E F    ++G Q                  +DEA K  R M+ ++C P
Sbjct: 488 KYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSP 544


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 166/378 (43%), Gaps = 25/378 (6%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPT 149
           Y     A D F   A +GQ    +++N+M++     G    M +   +M  DG+   + T
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICT 396

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +  +Y   G  D+A++ F+ M  HGV+ +V+   ++++A+CR         +F   +
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMI 456

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + V PD  ++  L++G+   G++ +A +   E++     N  H+   +  L + I    
Sbjct: 457 DQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMN----NGMHL---DIVLFSSI---- 505

Query: 270 VDEALKFLRVMKGENCF---------PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           ++   K  RVM  +N F         PT   +S  +D    +     A++++D  MV  G
Sbjct: 506 INNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFD-AMVSAG 564

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             P+ + Y  +     K  R+ E    F EM++   +P+ +     I  L +A     A 
Sbjct: 565 IEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAK 624

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
             ++ + E+GI   + + + +L GL       +     +E+    + I  +T++ +    
Sbjct: 625 VKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGM 684

Query: 441 YNESR--SMRDIFDSLER 456
           +   R    +D+F S+ R
Sbjct: 685 FQTRRVEEAKDLFASISR 702



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 122/287 (42%), Gaps = 20/287 (6%)

Query: 185 VNSLLSAICRQENQTS------RALEFLNRVK------KIVDPDGDSFAILLEGWEKEGN 232
           +N  L+AI R  +  +       A+   NR        +++ P   ++AIL++   +   
Sbjct: 67  LNGFLAAIARAPSSAACRSGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHR 126

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKF 291
            E A   FG+++ R     + ++A    L      K+ DEAL  L     E  C P +  
Sbjct: 127 PELALAFFGQLL-RTGLRVDIIIA-NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFS 184

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEKFFH 349
           +S  L  L     S  A  L   MM   GA   PD + YN + +   K   V++    F 
Sbjct: 185 YSILLKSLCDQGKSGQADDLLR-MMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFK 243

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM++    P  +  ++ +  L  A   + A      ++  G+LP   + N L+ G  + G
Sbjct: 244 EMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTG 303

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSL 454
           +  +  R  +EM  + IL   VT + L  +   Y + +  RD+FD++
Sbjct: 304 QWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTM 350



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 87/435 (20%), Positives = 170/435 (39%), Gaps = 60/435 (13%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLV--HEVLQLSYDSP--SSAVDFFR-WAGRGQR 110
           +C+      +DD+   +A  G + +PD+V  + V+   +     + A D F+    RG  
Sbjct: 192 LCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIP 251

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAV 167
                ++ +V  L K    ++    +R M   GVL  P   T+ ++   Y   G++ EAV
Sbjct: 252 PDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL--PNNWTYNNLIYGYSSTGQWKEAV 309

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
             F  M    +  DVV  N L+ ++C+          F     K  +PD  S+ I+L G+
Sbjct: 310 RVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGY 369

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
             +G + +    F  M+   +     +  +   +        +D+A+     M+     P
Sbjct: 370 ATKGCLVDMTDLFDLMLG--DGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 427

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN------------------ 329
            +  ++  +  L ++     A++ ++  M+  G  PD   Y+                  
Sbjct: 428 NVLTYTTVIAALCRIGKMDDAMEKFN-QMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKEL 486

Query: 330 -------------MIFECLIKN----KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
                        ++F  +I N     RV + +  F   +     PT    A   +ML+D
Sbjct: 487 ISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPT----AVVYSMLMD 542

Query: 373 A----DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI-- 426
                 + E A+ +++ ++  GI P +     L+ G   +GR+ +      EML + I  
Sbjct: 543 GYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 602

Query: 427 --LIYEVTMHKLKKA 439
             ++Y + +  L +A
Sbjct: 603 STILYNIIIDGLFEA 617



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 123/318 (38%), Gaps = 55/318 (17%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+A + D    A + + A+  F  +   G+  D++  N LL   C +  +T  AL+ L  
Sbjct: 113 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFC-EAKRTDEALDILLH 171

Query: 209 -----------------VKKIVD----------------------PDGDSFAILLEGWEK 229
                            +K + D                      PD  ++  +++G+ K
Sbjct: 172 RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFK 231

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           EG+V +A   F EMV+R    P   + Y + +  L + + +D+A  FLR M  +   P  
Sbjct: 232 EGDVNKACDLFKEMVQR--GIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNN 289

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             ++N +           AV+++  M       PD +T+NM+   L K  ++ E    F 
Sbjct: 290 WTYNNLIYGYSSTGQWKEAVRVFKEMRR-QSILPDVVTFNMLMGSLCKYGKIKEARDVFD 348

Query: 350 EMIKNEWQP------TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
            M      P        LN       L+D        ++++ +L +GI P+  + N L+ 
Sbjct: 349 TMAMKGQNPDVFSYNIMLNGYATKGCLVD------MTDLFDLMLGDGIAPVICTFNVLIK 402

Query: 404 GLRNLGRLSDVRRFAEEM 421
              N G L        EM
Sbjct: 403 AYANCGMLDKAMIIFNEM 420



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 102/252 (40%), Gaps = 4/252 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L    ++ +++ L K GR     N   +    G+  +   ++ + D YC  GK ++A
Sbjct: 494 GMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKA 553

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +  FD M   G+E + V   +L++  C+          F   ++K + P    + I+++G
Sbjct: 554 LRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG 613

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             + G    A   F EM E       +   Y   L  L + +  DEA+   + ++  N  
Sbjct: 614 LFEAGRTVPAKVKFHEMTE--SGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVK 671

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
             +   +  +  + +      A  L+   +   G  P  +TY+++   LIK   V E E 
Sbjct: 672 IDIITLNTMIAGMFQTRRVEEAKDLF-ASISRSGLVPCVVTYSIMITNLIKEGLVEEAED 730

Query: 347 FFHEMIKNEWQP 358
            F  M     +P
Sbjct: 731 MFSSMQNAGCEP 742



 Score = 38.5 bits (88), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 103/271 (38%), Gaps = 8/271 (2%)

Query: 43  HLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY---DSPSSAV 99
           HLD    SS    +C++     + +I       G+ PT  +V+ +L   Y        A+
Sbjct: 496 HLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTA-VVYSMLMDGYCLVGKMEKAL 554

Query: 100 DFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
             F      G   +   +  +V+   K GR ++  +  R M + G+  S   +  I D  
Sbjct: 555 RVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 614

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
             AG+   A + F  M+  G+  +    + +L  + +          F       V  D 
Sbjct: 615 FEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDI 674

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +   ++ G  +   VEEA   F   + R    P  V+ Y   +  LI+   V+EA    
Sbjct: 675 ITLNTMIAGMFQTRRVEEAKDLFAS-ISRSGLVP-CVVTYSIMITNLIKEGLVEEAEDMF 732

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             M+   C P  +  ++ +  L+K N+   A
Sbjct: 733 SSMQNAGCEPDSRLLNHVVRELLKKNEIVRA 763


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 138/338 (40%), Gaps = 48/338 (14%)

Query: 128 RFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           R E+  + V  M E G+   +  + +I DS C  G  D A+  F+ M  +G+  DVV   
Sbjct: 156 RIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYT 215

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           SL++ +C         L     +K+ + PD  +F  L++ + KEG + +A + + EM++ 
Sbjct: 216 SLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQ- 274

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P ++  Y + +  L    ++DEA +   +M+ + CF                    
Sbjct: 275 MSIAP-NIFTYTSLINGLCMEGRLDEARQMFYLMETKGCF-------------------- 313

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
                           PD + Y  +     K K+V +  K F+EM +       +   T 
Sbjct: 314 ----------------PDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTL 357

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR-- 424
           I       +P +A E++ +++  G+ P   + N LL  L   G+++      E+M  R  
Sbjct: 358 IQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREI 417

Query: 425 -----RILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 457
                 I  Y V +H L   +  +      +F  +++R
Sbjct: 418 DGVPPNIRTYNVLLHGL--CYNGKLEKALMVFGDMQKR 453



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 125/296 (42%), Gaps = 5/296 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  + +      K+D  +     + + GV  D+   N L++  C Q +Q   A  F
Sbjct: 70  SIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFC-QSSQPCLASSF 128

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  +F  L+ G+     +EEA     +MVE     P+ V+ Y T + +L
Sbjct: 129 LGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVE-MGIKPD-VVIYTTIIDSL 186

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            +   VD AL     M+     P +  +++ ++ L        A  L   MM      PD
Sbjct: 187 CKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMK-RKIKPD 245

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +T+N + +  +K  ++ + ++ ++EMI+    P      + I  L      + A +++ 
Sbjct: 246 VITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFY 305

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
            +   G  P   +   L+ G     ++ D  +   EM  + +    +T   L + F
Sbjct: 306 LMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGF 361



 Score = 39.3 bits (90), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 34/174 (19%), Positives = 72/174 (41%), Gaps = 17/174 (9%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           G++  P++  EV             F     RG   +   +N+++  L  NG+  +    
Sbjct: 362 GLVGKPNVAQEV-------------FGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMI 408

Query: 136 VRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              M++  +  +P    T+  +    C  GK ++A+M F  M    ++  ++    ++  
Sbjct: 409 FEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQG 468

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           +C+          F +   K V P+  ++  ++ G  +EG + EA+  F +M E
Sbjct: 469 MCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKE 522


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 133/272 (48%), Gaps = 10/272 (3%)

Query: 96  SSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFAS 152
           + AV  F+   R +   P    +  +++ L K G  E+  + +R+M++      + T++ 
Sbjct: 149 TDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSI 208

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + D+ C     D A+   + M    +  ++   NSL+  +C+   Q  +    L+ +  +
Sbjct: 209 VIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKL-GQWEKVKTLLSEMVNL 267

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            ++P+  +F+IL++G  KEG VE+A++    M+E+    P+ ++ Y   +       QVD
Sbjct: 268 NINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEK-GVEPD-IITYSAIMDGYCLRGQVD 325

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
            A +   V++ +   P +  +S  ++   K  +   A+QL+   +   G  PD++TY+ I
Sbjct: 326 RARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFG-EISQKGLKPDTVTYSTI 384

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
              LI+  R+ + +K F EM++    PTP  C
Sbjct: 385 LHGLIEVGRIGDAKKIFDEMLR--VGPTPDIC 414



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 121/243 (49%), Gaps = 6/243 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +++++D L K G+ E     +R M E GV   + T+++I D YC  G+ D A   F+V
Sbjct: 274 HTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNV 333

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           +   G++ ++ + + L++  C+++N  ++A++    + +K + PD  +++ +L G  + G
Sbjct: 334 LRDKGIKPNIFSYSILINGYCKKKN-LAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVG 392

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            + +A K F EM+ R    P+  L + T L    +   V+EA+     ++       + F
Sbjct: 393 RIGDAKKIFDEML-RVGPTPDICL-HSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISF 450

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  ++ L K +    A  +++ +    G  PD  TYN++     +     EV+    +M
Sbjct: 451 YTVVINGLCKNDRVREAHAIFEKLPSI-GLIPDVRTYNVMITGFCREGLFDEVKGILRKM 509

Query: 352 IKN 354
             N
Sbjct: 510 EDN 512



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 139/339 (41%), Gaps = 47/339 (13%)

Query: 129 FEQMWN------AVRVMKEDGVLSLPTFASIFD----SYCGAGKYDEAVMSFDVMSMHGV 178
           F+ M N       V + +E  +L +P   SI +    SYC   + D A     +    G+
Sbjct: 69  FKTMINMKHYSAVVSLFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSVLPIYLKTGI 128

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEAN 237
             +VV  N+LL  +  +   T   + F   V+ KI +P+   +  ++ G  K G+ E+  
Sbjct: 129 PFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKT- 187

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
            +   ++E+    P+ V  Y   +  L +   +D A+  L  MK +N  P +  +++ +D
Sbjct: 188 LSLLRIMEQGNTKPD-VRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLID 246

Query: 298 ILVKL------------------NDSTHAVQLW--------------DIM--MVFHGAFP 323
            L KL                  N + H   +               ++M  M+  G  P
Sbjct: 247 GLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEP 306

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D +TY+ I +      +V    + F+ +     +P   + +  I           A++++
Sbjct: 307 DIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLF 366

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
             I + G+ P   + + +L GL  +GR+ D ++  +EML
Sbjct: 367 GEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEML 405


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 155/364 (42%), Gaps = 52/364 (14%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGK---NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY 157
           F R    G +LS  + N ++  L K   NG  E ++    ++K    L++ +F  + +  
Sbjct: 108 FKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYR--EMIKRKIELNVISFNIVVNGL 165

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNR-VKKIVD 214
           C  GK + A    + M + GV  +V+  N+L+   C+     +  +A   L   V K + 
Sbjct: 166 CKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGIC 225

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  ++ IL++G+ K+ NV  A + FGEM +R    P +V+ Y   +  L    +VDEA 
Sbjct: 226 PNEVTYNILIDGFCKDENVSGAMRVFGEM-QRQGLRP-NVVTYNILINGLCSDGKVDEA- 282

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
                                    V L D           MV     P+ +T+N++   
Sbjct: 283 -------------------------VALRDQ----------MVSSDLEPNVVTHNVLING 307

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
             KNK V+E    F++M K    P  +   T I         E A  ++N +++ GI P 
Sbjct: 308 FCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPE 367

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDI 450
            ++ N L+ GL   G +   R    EM++++    ++ Y + +  L K    ESR    +
Sbjct: 368 VSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKK--GESRKAVKL 425

Query: 451 FDSL 454
            D +
Sbjct: 426 LDEM 429



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 136/309 (44%), Gaps = 7/309 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           R   L+  ++N++V+ L K G+  +  + +  MK  GV  ++ T+ ++ D YC  G+  +
Sbjct: 149 RKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGK 208

Query: 166 AVMSFDV---MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
              +  +   M   G+  + V  N L+   C+ EN +     F    ++ + P+  ++ I
Sbjct: 209 MYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNI 268

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G   +G V+EA     +MV   +  P +V+ +   +    + K V+EA+     M+ 
Sbjct: 269 LINGLCSDGKVDEAVALRDQMVSS-DLEP-NVVTHNVLINGFCKNKTVNEAINLFNDMEK 326

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +   P    ++  +D   K      A  L++ MM+  G FP+  TYN +   L +   V 
Sbjct: 327 QGVDPNAMTYTTLIDAYCKDGRMEDAFALYN-MMIDRGIFPEVSTYNCLIAGLCRKGDVK 385

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
                 +EM+  +     +     I  L    E   A+++ + + E G+ P   + N L+
Sbjct: 386 AARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLM 445

Query: 403 VGLRNLGRL 411
            G    G L
Sbjct: 446 DGYCREGNL 454



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 67/132 (50%), Gaps = 5/132 (3%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           Q + P A  +  ++D   K+GR E  +    +M + G+   + T+  +    C  G    
Sbjct: 327 QGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKA 386

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILL 224
           A    + M    +  DVV  N L+ ++C++  ++ +A++ L+ + +K ++P   ++  L+
Sbjct: 387 ARSLMNEMVSKKLSADVVTYNILIDSLCKK-GESRKAVKLLDEMFEKGLNPSHVTYNTLM 445

Query: 225 EGWEKEGNVEEA 236
           +G+ +EGN+  A
Sbjct: 446 DGYCREGNLRAA 457



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 48/98 (48%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  + DS C  G+  +AV   D M   G+    V  N+L+   CR+ N  +  +     
Sbjct: 405 TYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRM 464

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
            +K    +  +  +L++G+  +G +E+AN    EM+ER
Sbjct: 465 ERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLER 502


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 145/310 (46%), Gaps = 7/310 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + +++  L  + + E+  +  R M+E GV  ++ T+ ++ D YC      +A+  +  M
Sbjct: 219 VYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDM 278

Query: 174 SMHGVEQDVVAVNSLLSAICR-QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
              G+  DVV    L+  +C+  E + +R L F+N +K  V P+   +  L++ + K G+
Sbjct: 279 LGEGLVPDVVTFGILIDGLCKFGEMKAARNL-FVNMIKFSVTPNIAVYNSLIDAYCKVGD 337

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V EA   F E+ ERFE +P+ V  Y   +  L    + +EA      M  E        +
Sbjct: 338 VSEAMALFLEL-ERFEVSPD-VFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTY 395

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           ++ +D   K      A+++    M  +G  P+ +T++ + +   K + +      + EM+
Sbjct: 396 NSLIDGCCKEGKMDKALEICS-QMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMV 454

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P  +     I         + A+++++ +L+NGI P   + + LL GL   G++S
Sbjct: 455 IKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKIS 514

Query: 413 D-VRRFAEEM 421
           D +  F E++
Sbjct: 515 DALELFTEKI 524



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 140/306 (45%), Gaps = 9/306 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L+  A N+++ VL K GRFE +W     M  +G+  S+ TF ++ D  C  G    A
Sbjct: 142 GAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRA 201

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
              FD M + G+   V+    L+  +C  +N+   A      ++++ V P+  ++  L++
Sbjct: 202 QEMFDEMRVKGIVPTVIVYTILIRGLC-SDNKIEEAESMHRAMREVGVYPNVYTYNTLMD 260

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ K  N ++A + + +M+   E     V+ +   +  L +  ++  A      M   + 
Sbjct: 261 GYCKLANAKQALRLYQDMLG--EGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSV 318

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P +  +++ +D   K+ D + A+ L+  +  F  + PD  TY+++   L    R  E  
Sbjct: 319 TPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVS-PDVFTYSILIRGLCSVSRTEEAG 377

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG- 404
             F +M K       +   + I       + + A+EI + + ENG+ P   + + L+ G 
Sbjct: 378 NIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGY 437

Query: 405 --LRNL 408
             +RNL
Sbjct: 438 CKIRNL 443



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 72/133 (54%), Gaps = 1/133 (0%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDV 172
           + +++++  L    R E+  N    M ++G+L+   T+ S+ D  C  GK D+A+     
Sbjct: 358 FTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQ 417

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M+ +GVE +V+  ++L+   C+  N  +    +   V K + PD  ++  +++G  K G+
Sbjct: 418 MTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGS 477

Query: 233 VEEANKTFGEMVE 245
           ++EA K + +M++
Sbjct: 478 MKEALKLYSDMLD 490



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/253 (20%), Positives = 104/253 (41%), Gaps = 29/253 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +    G   +   +N ++D   K G+ ++       M E+GV  ++ TF+++ D YC 
Sbjct: 380 FEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCK 439

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
                 A+  +  M +  +  DVV   +++   C+  +       + + +   + P+  +
Sbjct: 440 IRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYT 499

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV------------LAYETFLITLIRG 267
            + LL+G  K+G + +A + F E +E F+    +V            +AY   +  L + 
Sbjct: 500 ISCLLDGLCKDGKISDALELFTEKIE-FQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQD 558

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH------GA 321
            Q  +A+K    M+     P    +   L  L          Q+  I+M+ H      G 
Sbjct: 559 GQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGL---------FQVKYILMMLHADMLKFGV 609

Query: 322 FPDSLTYNMIFEC 334
            P+S  + ++ EC
Sbjct: 610 IPNSAVHVILCEC 622


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 160/354 (45%), Gaps = 11/354 (3%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156
           AVD F W  + G  +S YA + M+D+L  + R + +      M +     L  +  +F+S
Sbjct: 159 AVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEMCK----GLGVYEFVFNS 214

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDP 215
           +   G+ ++ +     +   G+   +V  N +L  +C   NQ   A +F +  V+    P
Sbjct: 215 FLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLC-MGNQIGVASDFFDMMVRSGPSP 273

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           +  +F+ L+  + KE  ++EA   +  M+E+    P+ V+ Y   +  L R  +++E   
Sbjct: 274 NLVTFSTLINVYCKELRLDEAFSLYNLMIEK-GIVPDLVI-YSILINGLFRAGKLEEGNS 331

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
              +         +  FS+ +D  V++ D   A++++  M+   G  P+ +TY+++   L
Sbjct: 332 LFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLK-EGISPNVVTYSILINGL 390

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
            +N RV E    F +++K   +P+ L  ++ I     ++       ++  +L  G +P  
Sbjct: 391 CRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDV 450

Query: 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD 449
              + L+ GL   G + +  RF  + + R + +     + L    +   R+ RD
Sbjct: 451 VVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRT-RD 503



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/367 (20%), Positives = 158/367 (43%), Gaps = 44/367 (11%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVL 123
           +   AL   G++P     +++L+     +    A DFF    R G   +   ++ +++V 
Sbjct: 226 NFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVY 285

Query: 124 GKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
            K  R ++ ++   +M E G++  L  ++ + +    AGK +E    F +    GV+ DV
Sbjct: 286 CKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDV 345

Query: 183 VAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           V  +S++ A  R      +A+E   R +K+ + P+  +++IL+ G  + G V EA   FG
Sbjct: 346 VIFSSIMDAYVRV-GDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFG 404

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-------------- 287
           +++++    P  VL Y + +    + + + +      +M  +   P              
Sbjct: 405 QILKQ-GLEPS-VLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSR 462

Query: 288 ------TLKFFSNA---------------LDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
                  L+FF  A               +D   +L  +   ++++ I+M  +   PD +
Sbjct: 463 QGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMY-ILMGMYKVIPDVV 521

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           TY ++ + L +  R+ E    F +++K  + P  +   T I       +P   ++I+  +
Sbjct: 522 TYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLM 581

Query: 387 LENGILP 393
             NGI P
Sbjct: 582 QSNGIFP 588



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/396 (19%), Positives = 160/396 (40%), Gaps = 13/396 (3%)

Query: 61  AHASSDDIESALACTGII----PTPDLVHEVLQLSYDSPSSAVD-----FFRWAGRGQRL 111
               S+++       GI+      PD+V   + ++  S    +D     FF+   RG  L
Sbjct: 424 GFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTL 483

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           + Y +N ++D   +  R         +M    V+  + T+  +       G+ DEA+  F
Sbjct: 484 NNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALF 543

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             +   G   D +   +L+   C++ +  +    F       + PD   + +L+  + +E
Sbjct: 544 FQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFRE 603

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G VE   +   E++ ++   P+ ++ Y T +      K   +A+K   V+K     P   
Sbjct: 604 GCVENVLELLREII-KYGLEPD-IVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAI 661

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            F+  +D   K      A+ ++  M+   G  P+ LTY+ + +   K +      + + +
Sbjct: 662 TFTILIDAYCKDGRMDDAMLIFSSMLE-RGPEPNILTYSCLIDGYFKTENTESAFELYEK 720

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M+ +   P  ++ +  I  L      E A   +   +   +LP   +   L+ G   +GR
Sbjct: 721 MLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGR 780

Query: 411 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446
           L++     + ML   I+  ++    L +  + +S++
Sbjct: 781 LAEAMMLYDHMLVNGIMPDDLLQKALAEYGFQDSQA 816


>gi|255660922|gb|ACU25630.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 484

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 136/288 (47%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P  D  LV+ VL  + ++   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPCFDHELVYNVLHGAKNA-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY  AG   E+V  F  M   GVE+ + + ++L   
Sbjct: 65  RCILLDMPKKGLEWDXDMWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG+N  P +  ++  +   V ++    A++L
Sbjct: 184 D-VITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPNVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  + G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGY-GIKPNAITYSTLLPGLCNAEKMSEARSILKEMLDKYIAPT 289



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K G V+E+ K F +M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDXDMWVLMIDSYGKAGIVQESVKLFQKMEELGVER------TIKSYDAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +P  +   T I   +  D+ + A+
Sbjct: 181 ISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPNVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            +   +   GI P   + + LL GL N  ++S+ R   +EML++ I
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMLDKYI 286


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 158/394 (40%), Gaps = 50/394 (12%)

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-- 148
           S   P+ A++  R   R   ++   +N ++      GR +   + +R M+E G ++ P  
Sbjct: 500 SAGKPARALELLRQMPRPNAVT---YNTVIAGFCSRGRVQAALDIMREMRERGGIA-PNQ 555

Query: 149 -TFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQ----------- 195
            T+ ++   +C  G+ DEAV  FD M   G V+ + V  N+L+   C Q           
Sbjct: 556 YTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRD 615

Query: 196 -----------------------ENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
                                  + + + A E +  +  K + PD  ++ IL+ G  KEG
Sbjct: 616 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 675

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           NV++A + F  M  R       V+ Y   +  L +  QV E  K           P L  
Sbjct: 676 NVKKALEIFENMSRRGVR--ATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVL 733

Query: 292 FSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
           + NAL  +   + S +  + ++IM  M      PD +TYN +   L    RV E  K   
Sbjct: 734 Y-NAL--INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLID 790

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM +   QP  +   T I+      + + A+ I N ++  G  P   + N L+ GL   G
Sbjct: 791 EMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 850

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
           +  D     +EM+   I   + T   L +    E
Sbjct: 851 QGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 884



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 121/277 (43%), Gaps = 4/277 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           R   RG  ++   +NL+V  L  +GR  + +  V  M   G+   + T+  + + +C  G
Sbjct: 616 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 675

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
              +A+  F+ MS  GV   VV   +L+ A+ ++         F   V++ + PD   + 
Sbjct: 676 NVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 735

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+      GN++ A +  GEM E+    P+ V  Y T +  L    +VDEA K +  M 
Sbjct: 736 ALINSHSTSGNIDRAFEIMGEM-EKKRIAPDDV-TYNTLMRGLCLLGRVDEARKLIDEMT 793

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
                P L  ++  +       D   A+++ + MM   G  P  LTYN + + L KN + 
Sbjct: 794 ERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM-NKGFNPTLLTYNALIQGLCKNGQG 852

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            + E    EM++N   P      + I  L   DE  I
Sbjct: 853 DDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAI 889



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 141/351 (40%), Gaps = 50/351 (14%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L   TF  +    C AGK   A+     M       + V  N++++  C +  +   AL+
Sbjct: 486 LCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSR-GRVQAALD 540

Query: 205 FLN--RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
            +   R +  + P+  ++  ++ GW K G V+EA K F EM+ + E  PE V+ Y   + 
Sbjct: 541 IMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM-YNALIG 599

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
                 ++D AL +   M       T+  ++  +  L      T A +L +  M   G  
Sbjct: 600 GYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVE-EMGGKGLA 658

Query: 323 PDSLTYNM----------------IFE-------------------CLIKNKRVHEVEKF 347
           PD  TYN+                IFE                    L K  +V E +K 
Sbjct: 659 PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKL 718

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           F E ++   +P  +     I     +   + A EI   + +  I P + + N L+ GL  
Sbjct: 719 FDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCL 778

Query: 408 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR-DIFDSLERR 457
           LGR+ + R+  +EM  R I    VT + L   +     SM+ D+ D+L  R
Sbjct: 779 LGRVDEARKLIDEMTERGIQPDLVTYNTLISGY-----SMKGDVKDALRIR 824


>gi|449436637|ref|XP_004136099.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Cucumis sativus]
 gi|449509164|ref|XP_004163514.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
           mitochondrial-like [Cucumis sativus]
          Length = 547

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 161/373 (43%), Gaps = 36/373 (9%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           DLV+  + +  D   S++  F+W  +   +     NLM+ VLG + +F   W+ +R +  
Sbjct: 116 DLVYSAIWVLRDDWKSSLLAFKWGEKVGAIDEEICNLMIWVLGNHKKFSTAWSLIRELHG 175

Query: 142 DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
             + S+     + D Y  A +  +A+ +F +M    +  D  A + LL+++C+  N    
Sbjct: 176 SLLNSMQAMLVMIDRYAYANEASKAIKTFHMMEKFRLTPDQEAFHVLLNSLCKYGN-IEE 234

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGW-EKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           A EF+   KK+     +SF I+L GW     +V EA + + EM  +    P+   +Y   
Sbjct: 235 AEEFMFVNKKLFPLGTESFNIILNGWCNVTVDVFEAKRIWREM-SKCCILPDST-SYTHM 292

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +    +   + ++L+F   MK  +  P+++ +++   +L + N    A+++ + +    G
Sbjct: 293 ISCFSKNGNLFDSLRFYDQMKKRDWIPSVEVYNSLAYVLTRENCFNEALKILEKIKEV-G 351

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI------------- 367
             PDS TYN +   L +  ++ E +     M ++   PT     + I             
Sbjct: 352 LRPDSTTYNSLISPLCEAGKLDEAKDVLTMMTEDNISPTIETYHSFIQAADSKMSFELLK 411

Query: 368 ------------TMLL------DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
                       T L+      + +EPE A+ +W  +    + P     + L+ GL   G
Sbjct: 412 RMRQDGLGPTEGTFLIMFNKSFELEEPEYALNVWVEMKRYEVFPSCEHYSVLIQGLATCG 471

Query: 410 RLSDVRRFAEEML 422
            L   R   +EM+
Sbjct: 472 HLKKARELYDEMI 484


>gi|147827256|emb|CAN64312.1| hypothetical protein VITISV_027954 [Vitis vinifera]
          Length = 655

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 156/358 (43%), Gaps = 28/358 (7%)

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           V + L    +    A++FF W     G   +   +N M+D+LGK   F+ +W  ++ MK 
Sbjct: 292 VRQTLSCYANDWKRALEFFDWVQTQCGFNHTTDTYNGMIDILGKFFEFDLIWVLIQRMKA 351

Query: 142 DGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           D V + P   TF  +F  Y  A   +EA+ ++       + +D  + ++L+ A+C  ++ 
Sbjct: 352 DPV-AYPNHVTFRFVFKRYAAAHLVEEAMNAYYRTEEFNL-RDETSYSNLIDALCEYKHV 409

Query: 199 TSRALEFLNRVKKIV-DPDGDSFAILLEGWEKEGNVEE--------ANKTFGEMVE---R 246
                 FL   K +V + D   + I+L GW K G VEE        A K + EM +   R
Sbjct: 410 IEAEELFLKESKDLVFNDDVKIYNIILRGWFKNGVVEECKSGKPWRAVKLYKEMKKKGIR 469

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
            +     V+AY T +  +   + VD +++  R  K   C P +  ++  + +L +     
Sbjct: 470 LD-----VVAYNTVIRAIGLSEGVDFSIRVFREXKEVGCEPNVVTYNTIIKLLCENGRIR 524

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            A  ++D  M   G  P+ +TY+  F C+ K K   ++ + F  MI +  +P        
Sbjct: 525 EAYGVFD-QMREKGYAPNVITYHCFFGCIEKPK---QILRTFDRMINSGVRPRMDTYVML 580

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           +              +W  + E G  P   + N L+  L   G +   R++ EEML +
Sbjct: 581 MKKFGRWGFLRPVFIVWKKMEEQGCSPDACAYNALIDALVQKGMVDLARKYEEEMLAK 638


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 135/292 (46%), Gaps = 5/292 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N +VD L K G+  +  + V  M + GV  ++ T+ ++ D +C   + DEAV  FD M
Sbjct: 273 SFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTM 332

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   +V++ N+L++  C+ +        F    ++ + PD  +++ L+ G      +
Sbjct: 333 VCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERL 392

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A   F EMV   +    +++ Y   L  L + + + EA+  L+ ++G N  P ++  +
Sbjct: 393 QDAIALFHEMVACSQI--PNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNN 450

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
            A+D + +  +   A  L+   +   G  PD  TY+++   L +   + E  K F EM +
Sbjct: 451 IAIDGMCRAGELEAARDLFS-NLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDE 509

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           N          T     L  +E   AI++   ++  G    +AS   L V +
Sbjct: 510 NGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARG-FSADASTMTLFVKM 560



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 119/277 (42%), Gaps = 9/277 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++       GK  EA+  FD M   G   DVV   +L++ +C+  N TS A+  L  
Sbjct: 133 TFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGN-TSAAIRLLGS 191

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V+K   P+  ++  +++   K+  V EA   F EMV +   +P+ +  Y + +  L   
Sbjct: 192 MVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTK-GISPD-IFTYNSLIHALCNL 249

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +       L  M      P +  F+  +D L K    T A  + D  M+  G  P+ +T
Sbjct: 250 CEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVD-KMIQRGVEPNVVT 308

Query: 328 YNMIFE--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           Y  + +  CL+    + E  K F  M+     P  ++  T I         + A+ ++  
Sbjct: 309 YTALMDGHCLL--SEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGE 366

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
           +    ++P   + + L+ GL ++ RL D      EM+
Sbjct: 367 MCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMV 403



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 119/268 (44%), Gaps = 13/268 (4%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAI 222
           D A+ SF+ M         V  N LL++I + ++  S  L   +++    + P+  +  I
Sbjct: 43  DGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHH-STLLSLSHQMDSFGIPPNIYTLHI 101

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLR 278
           L+  +     V  A     +++ +    P+      TF  TLIRG     ++ EAL    
Sbjct: 102 LINSFCHLNRVGFAFSVLAKIL-KLGHQPD----TATF-TTLIRGIYVEGKIGEALHLFD 155

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M GE   P +  +   ++ L K+ +++ A++L    MV     P+   YN I + L K+
Sbjct: 156 KMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLG-SMVQKNCQPNVFAYNTIIDSLCKD 214

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
           ++V E    F EM+     P      + I  L +  E +    + N ++++ I+P   S 
Sbjct: 215 RQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSF 274

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           N ++  L   G++++     ++M+ R +
Sbjct: 275 NTVVDALCKEGKVTEAHDVVDKMIQRGV 302



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 3/152 (1%)

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
           A+ L+D  M+  G  PD +TY  +   L K        +    M++   QP      T I
Sbjct: 150 ALHLFD-KMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTII 208

Query: 368 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
             L    +   A  +++ ++  GI P   + N L+  L NL     V     EM++ +I+
Sbjct: 209 DSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIM 268

Query: 428 IYEVTMHKLKKAFYNESR--SMRDIFDSLERR 457
              V+ + +  A   E +     D+ D + +R
Sbjct: 269 PDVVSFNTVVDALCKEGKVTEAHDVVDKMIQR 300


>gi|255660988|gb|ACU25663.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 376

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 163/363 (44%), Gaps = 18/363 (4%)

Query: 80  TPD-LVHEVLQLSYDSPSSAVDFFR-W--AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           +PD +V+  +   Y   +   D F  W   GR    S  ++N+M+  L  NG+ E++   
Sbjct: 22  SPDAVVYNAMLNGYFRVAKIKDCFELWEMMGREGNRSVSSFNIMMRGLFDNGKVEEVIXI 81

Query: 136 VRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
             +MK+ G V    T+  +   +C  G  D+++   ++    G   D  A +++++ +C+
Sbjct: 82  WELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYSAMINGLCK 141

Query: 195 QENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           + N   RA+  LN  +K    P+   +  L+ G       E+A + F EM      +P  
Sbjct: 142 EAN-LDRAVCVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPT- 198

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           ++ Y T +  L + +   EA   ++ +  +   P +  +S     L   +    A+QLW+
Sbjct: 199 IITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLXKGLCLDHKVEKALQLWN 258

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML--- 370
             +   G  PD   +N++   L    ++      + +M  N W+  P N  +  T++   
Sbjct: 259 -QVTSKGFKPDVQMHNILIHGLCSVGKMQHALSLYFDM--NRWKCAP-NLVSHNTLMEGF 314

Query: 371 -LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
             D D    A+ IW  IL NG+ P   S N  L GL +  R+SD   F  + + ++I++ 
Sbjct: 315 YKDGDIRN-ALVIWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVLT 373

Query: 430 EVT 432
           ++T
Sbjct: 374 KIT 376


>gi|255660910|gb|ACU25624.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 484

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 129/281 (45%), Gaps = 7/281 (2%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQMWNAVRVM 139
           +LV+ VL  S  +   A+ FFRW  R           +  +++LG+  +       +  M
Sbjct: 13  ELVYNVLH-SAKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDM 71

Query: 140 KEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
            + G+      +  + DSY   G   E+V  F  M   GVE+ + + ++L   I R+   
Sbjct: 72  PKKGLEWDEDMWVMMIDSYGKQGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRY 131

Query: 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
                 F   + + ++P   +F +L+ G+   G VE AN+ F +M  R E +P+ V+ Y 
Sbjct: 132 MMAKRYFNKMLSEGIEPTRXTFXVLIWGFFLSGKVETANRFFEDMKSR-EISPD-VVTYN 189

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
           T +    R K+ +EA K+   MKG N  PT+  ++  +   V ++    A++L + M  F
Sbjct: 190 TMINGYYRVKKXEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF 249

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            G  P+++ Y+ +   L   +++ E      EM+     PT
Sbjct: 250 -GIKPNAIXYSTLLPGLCNAEKMSEARSILKEMMDKYLAPT 289



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K+G V+E+ K F +M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKLFQKMEELGVER------TIKSYDAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F   +           A + ++ M     
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRXTFXVLIWGFFLSGKVETANRFFEDMKSREI 181

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
           + PD +TYN +     + K+  E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 182 S-PDVVTYNTMINGYYRVKKXEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P     + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAIXYSTLLPGLCNAEKMSEARSILKEMMDK 284


>gi|222640196|gb|EEE68328.1| hypothetical protein OsJ_26607 [Oryza sativa Japonica Group]
          Length = 461

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 132/288 (45%), Gaps = 19/288 (6%)

Query: 90  LSYDSPSSAVDFFRWAGRGQ--RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL 145
           ++ DSP++AV  F    R     ++P  + + +++    + GR +  +  +  + + G  
Sbjct: 71  VARDSPAAAVSGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYR 130

Query: 146 SLPT-FASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
             P  F  +  S C   +   A+ +    M+  G    V + N LL  +C  E+++  AL
Sbjct: 131 VEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLC-HESRSQEAL 189

Query: 204 EFLNRVKKIVDPDGD------SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
           E L+    + D  GD      S++ +++G  KEG+ ++A  T+ EM+ER    P+ V+ Y
Sbjct: 190 ELLH---MMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGIL-PD-VVTY 244

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
            T +  L + + +D+A+  L  M      P    +++ +        S  A+ + +  M 
Sbjct: 245 NTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILE-KMC 303

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
             G  PD++TY  + + L KN R  E  K    MIK   +P  +  +T
Sbjct: 304 SDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYST 351



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 126/285 (44%), Gaps = 14/285 (4%)

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKK----IVDPDGDSFAILLEGWEKEGNVEEAN 237
           + ++N  L+A+ R  +  + A+   NR+ +     V P   ++ IL+    + G ++   
Sbjct: 61  IRSLNRALAAVAR--DSPAAAVSGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGF 118

Query: 238 KTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKF-LRVMKGENCFPTLKFFSNA 295
              G ++++ +   P   + +   L +L   K+   A+   LR M    C P +  ++  
Sbjct: 119 AGLGNVIKKGYRVEP---IIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNIL 175

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHG-AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
           L  L   + S  A++L  +M    G   PD ++Y+ I + L K     +    +HEM++ 
Sbjct: 176 LKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLER 235

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
              P  +   T +  L  A   + A+++ N +++NG++P   + N ++ G  + G+  + 
Sbjct: 236 GILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEA 295

Query: 415 RRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLERR 457
               E+M +  +    VT   L        R +  R I DS+ +R
Sbjct: 296 IGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKR 340



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 7/187 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N+++  L    R ++    + +M +DG    P   ++++I D     G  D+A  ++
Sbjct: 170 FSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTY 229

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  DVV  N++++A+C+ +    +A++ LNR VK  V PD  ++  ++ G+  
Sbjct: 230 HEMLERGILPDVVTYNTIVAALCKAQ-AMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCS 288

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G  +EA     +M       P+ V  Y + +  L +  +  EA K L  M      P +
Sbjct: 289 SGQSKEAIGILEKMCSD-GVEPDAV-TYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNV 346

Query: 290 KFFSNAL 296
             +S  L
Sbjct: 347 ITYSTLL 353


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 134/282 (47%), Gaps = 4/282 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAG 161
           R    G + +   +N +V+ + K+G      + +R M E  V + + T+++I DS C  G
Sbjct: 160 RMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDG 219

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             D A+  F  M   G++  +V  NSL+  +C+            +   + + P+  +F 
Sbjct: 220 CIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFN 279

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +L++ + KEG ++EAN+ + EM+ +   +P + + Y + +       ++ EA   L +M 
Sbjct: 280 VLIDVFVKEGKLQEANELYKEMITK-GISP-NTITYNSLMDGYCMQNRLSEANNMLDLMV 337

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
             NC P +  F++ +    K+      ++L+   +   G   +++TY+++ +   ++ ++
Sbjct: 338 RNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFR-KISKRGLVANTVTYSILVQGFCQSGKL 396

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
              E+ F EM+     P  +     +  L D  + E A+EI+
Sbjct: 397 EIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIF 438



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 116/268 (43%), Gaps = 10/268 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDE 165
           +G   +   +N ++D      R  +  N + +M + +    + TF S+   YC   + DE
Sbjct: 304 KGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDE 363

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
            +  F  +S  G+  + V  + L+   C Q  +   A E    +  + V PD  ++ ILL
Sbjct: 364 GMKLFRKISKRGLVANTVTYSILVQGFC-QSGKLEIAEELFQEMVSLGVLPDVMTYGILL 422

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G    G +E+A + F E +++ + N + V+ Y   +  + +G +V++A      +  + 
Sbjct: 423 DGLCDNGKLEKALEIF-EDLQKSKMNLDIVM-YTIIIEGMCKGGKVEDAWNLFCSLPCKG 480

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P +  ++  +  L K    + A  L    M   G  P+  TYN +    +++  +   
Sbjct: 481 VKPNVMTYTVMISGLCKKGSLSEANILLR-KMEEDGNEPNDCTYNTLIRAHLRDGDLTAS 539

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLD 372
            K   EM    +       A++I M++D
Sbjct: 540 AKLIEEMKSCGFSAD----ASSIKMVID 563


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 148/351 (42%), Gaps = 6/351 (1%)

Query: 97  SAVDFFRW-AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFD 155
           +A+  FR+ A +G   +      ++  L K    E+ +     M++     +  F++  +
Sbjct: 195 NAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAIN 254

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVD 214
           ++C  GK ++A+  F  M   GV  +VV  N+L+  +C+  N    A  F  + VK  V+
Sbjct: 255 AFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGN-LDEAFRFKEKMVKDGVN 313

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
               ++++L+ G  K     EAN    E +E+  + P  V+ Y T +    +   + +AL
Sbjct: 314 ATLITYSVLINGLMKLEKFNEANSVLKETLEK-GFTPNEVV-YNTLIDGYCKMGNLGDAL 371

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           +    M  +   P     ++ +    K+     A  + + M+   G   +   +  I   
Sbjct: 372 RIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLS-RGFSINPGAFTTIIHW 430

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L  N R     +F  EM+    +P      T +  L    +   A+E+W  +LE G    
Sbjct: 431 LCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGAN 490

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             + N L+ GL   G + +  R  ++ML R  ++ ++T + L      E +
Sbjct: 491 LVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGK 541



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 139/325 (42%), Gaps = 22/325 (6%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM------KEDGVLSLPTFASIFDSYCGA 160
           RG  ++P A+  ++  L  N RFE     +R M        DG+L+     ++    C  
Sbjct: 415 RGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLT-----TLVGGLCKE 469

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP----D 216
           GK+ +AV  +  +   G   ++V  N+L+  +C+  N      E +  +KK+++     D
Sbjct: 470 GKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQ----EAVRLLKKMLERGFVLD 525

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++  L+ G  KEG VEE  K  GEMV++    P+    Y   +  + R  ++DEA+  
Sbjct: 526 KITYNTLISGCCKEGKVEEGFKLRGEMVKQ-GIEPD-TFTYNLLIHGMCRIGKLDEAVNL 583

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
               K  +  P +  +   +D   K +      +L+  ++  +    +S+ YN +     
Sbjct: 584 WNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLEL-NSVVYNTLIRAYC 642

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           +N    E  K   +M      PT    ++ I  + +    E A  + + + + G+LP   
Sbjct: 643 RNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVV 702

Query: 397 SANELLVGLRNLGRLSDVRRFAEEM 421
               L+ G   LG++  V    +EM
Sbjct: 703 CYTALIGGYCKLGQMDKVVNVLQEM 727



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/376 (20%), Positives = 147/376 (39%), Gaps = 39/376 (10%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           FF     G   +   +N ++  L K+G  ++ +     M +DGV  +L T++ + +    
Sbjct: 269 FFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMK 328

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             K++EA          G   + V  N+L+   C+  N         + V K ++P+  +
Sbjct: 329 LEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVT 388

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
              +++G+ K G +E+A     EM+ R F  NP    A+ T +  L    + + AL+FLR
Sbjct: 389 LNSIIQGFCKIGQMEQAECILEEMLSRGFSINPG---AFTTIIHWLCMNSRFESALRFLR 445

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM----------------------- 315
            M   N  P     +  +  L K    + AV+LW  +                       
Sbjct: 446 EMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTG 505

Query: 316 -----------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
                      M+  G   D +TYN +     K  +V E  K   EM+K   +P      
Sbjct: 506 NMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYN 565

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             I  +    + + A+ +WN      ++P   +   ++ G     ++ +  +   E+L +
Sbjct: 566 LLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQ 625

Query: 425 RILIYEVTMHKLKKAF 440
            + +  V  + L +A+
Sbjct: 626 NLELNSVVYNTLIRAY 641



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 124/274 (45%), Gaps = 15/274 (5%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKY 163
           Q + P  + +NL++  + + G+ ++   +WN  +    D V ++ T+  + D YC A K 
Sbjct: 555 QGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECK--SRDLVPNVYTYGVMIDGYCKADKI 612

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           +E    F  +    +E + V  N+L+ A CR  N T  A +  + ++ K + P   +++ 
Sbjct: 613 EEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGN-TVEAFKLHDDMRSKGIPPTTATYSS 671

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G    G +E+A     EM  R E    +V+ Y   +    +  Q+D+ +  L+ M  
Sbjct: 672 LIHGMCNIGRMEDAKCLIDEM--RKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSS 729

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
            +  P    ++  +D   K  D   A +L    MV  G  PD++TYN++     K  ++ 
Sbjct: 730 YDIHPNKITYTVMIDGYSKSGDMKTAAKLLH-EMVGKGIVPDTVTYNVLTNGFCKEGKIE 788

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
           E  K    M     +  PL+  T  T++    +P
Sbjct: 789 EGFKICDYM---SQEGLPLDEITYTTLVHGWQQP 819



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 81/212 (38%), Gaps = 35/212 (16%)

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLK-------------------------------- 290
           T  R      A+   R +  +  FPT+K                                
Sbjct: 186 TQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPD 245

Query: 291 --FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
              FS A++   K      A+QL+  M    G  P+ +TYN +   L K+  + E  +F 
Sbjct: 246 VYLFSTAINAFCKGGKVEDAIQLFFDMEKL-GVSPNVVTYNNLIHGLCKHGNLDEAFRFK 304

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            +M+K+    T +  +  I  L+  ++   A  +    LE G  P E   N L+ G   +
Sbjct: 305 EKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKM 364

Query: 409 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           G L D  R   +M+++ I    VT++ + + F
Sbjct: 365 GNLGDALRIRGDMVSKGINPNSVTLNSIIQGF 396



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 86/197 (43%), Gaps = 11/197 (5%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRV 138
           +V+  L  +Y    + V+ F+     R + + P    ++ ++  +   GR E     +  
Sbjct: 632 VVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDE 691

Query: 139 MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M+++G+L ++  + ++   YC  G+ D+ V     MS + +  + +    ++    +  +
Sbjct: 692 MRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGD 751

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             + A      V K + PD  ++ +L  G+ KEG +EE  K    M +  E  P   + Y
Sbjct: 752 MKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQ--EGLPLDEITY 809

Query: 258 ETFLITLIRGKQVDEAL 274
                TL+ G Q   AL
Sbjct: 810 ----TTLVHGWQQPSAL 822


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/351 (19%), Positives = 162/351 (46%), Gaps = 8/351 (2%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           T  ++ + L  + DS +    F +    G  +  Y  +++++ L K+G+       ++ +
Sbjct: 303 TYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSL 362

Query: 140 KEDGVLSLPT---FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
              G++  PT   + ++ + YC  G+ + A  +F  M    ++ D +  N+L++ +C+ E
Sbjct: 363 VNAGLV--PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAE 420

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
             T+     +      V+P  ++F  L++ + + G +E+      EM E     P +V++
Sbjct: 421 RITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQEN-GLKP-NVVS 478

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           Y + +    +  ++ EA+  L  M  ++  P  + ++  +D  V+   +  A  L +  M
Sbjct: 479 YGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVE-KM 537

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
             +G  P  +TYN++ + L    ++ E E+  + +  +   P  ++  T I+        
Sbjct: 538 KSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNI 597

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           + A+++   + + GI     + ++L+ GL   GRL ++    ++M+   ++
Sbjct: 598 DKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVV 648



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 113/285 (39%), Gaps = 10/285 (3%)

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G++ +   +F +++  G   D  A N  + A C        A+  L R+ +   P  ++F
Sbjct: 139 GRHADVRRAFGILASAGARPDTFAWNKAVQA-CVAAGDLGEAVGMLRRMGRDGAPPPNAF 197

Query: 221 A--ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +  +++ G  + G   +A + F EM ER    P H+  Y T +   I+G  ++       
Sbjct: 198 SYNVVIAGMWRAGRGGDAVEVFDEMTERAVL-PNHI-TYNTMIDGHIKGGDLEAGFSLRD 255

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M      P    ++  L  L +         L D  M      PD  TY+++F+ L +N
Sbjct: 256 QMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLD-EMASQKMVPDGFTYSILFDGLSRN 314

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
                +   F + +KN        C+  +  L    +  IA E+   ++  G++P     
Sbjct: 315 GDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIY 374

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKA 439
           N L+ G    G L        +M +R I    + Y   ++ L KA
Sbjct: 375 NTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKA 419



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 139/343 (40%), Gaps = 24/343 (6%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWN-----AVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           G + +   +N+++  L + GR  +        A + M  DG     T++ +FD     G 
Sbjct: 261 GLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGF----TYSILFDGLSRNGD 316

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFA 221
               +  F     +GV       + LL+ +C+ + + S A E L   V   + P    + 
Sbjct: 317 SKAMLSLFGKSLKNGVTIGDYTCSILLNGLCK-DGKVSIAEEVLQSLVNAGLVPTRVIYN 375

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+ G+ + G +E A  TFG+M  R    P+H+  Y   +  L + +++  A   L  M+
Sbjct: 376 TLINGYCQTGELEGAFSTFGQMKSR-HIKPDHI-TYNALINGLCKAERITNAQDLLMEMQ 433

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF-----HGAFPDSLTYNMIFECLI 336
                PT++ F+  +D   +        QL    +V      +G  P+ ++Y  I     
Sbjct: 434 DNGVNPTVETFNTLIDAYGRTG------QLEKCFIVLSEMQENGLKPNVVSYGSIVNAFC 487

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           KN ++ E      +M   +  P        I   ++    + A  +   +  NGI P   
Sbjct: 488 KNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIV 547

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
           + N L+ GL N  ++S+       + N R++   V+ + L  A
Sbjct: 548 TYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISA 590



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/397 (19%), Positives = 154/397 (38%), Gaps = 43/397 (10%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           AV   R  GR     P  +++N+++  + + GR          M E  VL +  T+ ++ 
Sbjct: 179 AVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMI 238

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKI 212
           D +   G  +      D M  HG++ + +  N LLS +CR  +  +TS  L+ +   K +
Sbjct: 239 DGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMV 298

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA---------------- 256
             PDG +++IL +G  + G+ +     FG+ ++      ++  +                
Sbjct: 299 --PDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAE 356

Query: 257 -----------------YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
                            Y T +    +  +++ A      MK  +  P    ++  ++ L
Sbjct: 357 EVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGL 416

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            K    T+A  L  + M  +G  P   T+N + +   +  ++ +      EM +N  +P 
Sbjct: 417 CKAERITNAQDLL-MEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPN 475

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
            ++  + +       +   A+ I + +    +LP     N ++      G         E
Sbjct: 476 VVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVE 535

Query: 420 EMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 454
           +M +  I    VT + L K   N+S+     +I +SL
Sbjct: 536 KMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSL 572


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 129/282 (45%), Gaps = 6/282 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N ++D L K G+ ++  N + VM + GV   +  ++ + D YC  G+  +A   F V
Sbjct: 221 YTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLV 280

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   GV  DV + N +++ +C+ + +   A+  L   + K + PD  +++ L++G  K G
Sbjct: 281 MVQTGVNPDVYSYNIIINGLCKGK-RVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLG 339

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +        EM  R +  P +++ Y + L  L + + +D+A+     MK     P    
Sbjct: 340 RITTILDLTKEMHHRGQ--PANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYT 397

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +D L K         L+  ++V  G   D  TY ++   L K     E      +M
Sbjct: 398 YTALIDGLCKGGRLKKGQALFQHLLV-KGYCIDVWTYTVMISGLCKEGMFDEALAMKSKM 456

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
             N   P  +     I  LL+ DE + A ++ + ++  G+LP
Sbjct: 457 EDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGLLP 498



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 134/326 (41%), Gaps = 43/326 (13%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           +   +G ++   ++ ++++ L K G        +R +++      +  +++I D  C   
Sbjct: 105 KVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDK 164

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV------------ 209
             DEA   +  M+  G+  DV+   +L+   C    Q   A   LN +            
Sbjct: 165 LVDEAYDLYSEMNARGIFPDVITYTTLICGFCL-AGQLMEAFGLLNEMILKNINPNIYTY 223

Query: 210 ------------------------KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
                                   KK V PD   ++IL++G+   G V++A + F  MV+
Sbjct: 224 NTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQ 283

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
               NP+ V +Y   +  L +GK+VDEA+  LR M  +N  P    +S+ +D L KL   
Sbjct: 284 T-GVNPD-VYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRI 341

Query: 306 THAVQLWDIMMVFHGAFPDSL-TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
           T  + L   M   H   P +L TYN + + L KN+ + +    F +M +   QP      
Sbjct: 342 TTILDLTKEM--HHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYT 399

Query: 365 TAITMLLDADEPEIAIEIWNYILENG 390
             I  L      +    ++ ++L  G
Sbjct: 400 ALIDGLCKGGRLKKGQALFQHLLVKG 425



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 126/276 (45%), Gaps = 9/276 (3%)

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK- 210
           ++    C  G+  +++   D +   G + D V+   LL+ +C+   +T  A++ L  ++ 
Sbjct: 85  TLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKI-GETRCAIKLLRTIED 143

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
           +   PD   ++ +++G  K+  V+EA   + EM  R  + P+ V+ Y T +       Q+
Sbjct: 144 RSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIF-PD-VITYTTLICGFCLAGQL 201

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
            EA   L  M  +N  P +  ++  +D L K      +  L  +M    G  PD + Y++
Sbjct: 202 MEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVM-TKKGVKPDVVIYSI 260

Query: 331 IFE--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           + +  CL+    V + ++ F  M++    P   +    I  L      + A+ +   +L 
Sbjct: 261 LMDGYCLVG--EVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLH 318

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             ++P   + + L+ GL  LGR++ +    +EM +R
Sbjct: 319 KNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHR 354


>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
 gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
          Length = 1090

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 165/390 (42%), Gaps = 18/390 (4%)

Query: 44  LDAPYISSSARI--ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSA--- 98
           +D   ++ SA I  +C +     + +I S +  +GI+P  D+++  L   Y         
Sbjct: 395 IDPDVVTYSALINGMCRMAKMHETKEILSRMQKSGILPN-DVLYTTLICYYCKAGYVKVA 453

Query: 99  ----VDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASI 153
               VD +R   RG   +P   N ++    + G   +  +  + M    +  +  +F  I
Sbjct: 454 LKHFVDIYR---RGLVANPVIHNALLRAFYREGMITEAEHFRQYMSRMNISFNSVSFNCI 510

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
            DSYC  GK  EA   +D M  +G   +V    +LL  +C Q     +A +F+  +  I 
Sbjct: 511 IDSYCHRGKIVEAFSVYDDMVRYGHSPNVCTYQNLLRGLC-QGGHLVQAKQFMFCLLDIP 569

Query: 214 DP-DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
              D  +F  LL G  K G ++EA     +MV+       H   Y   L    R  ++  
Sbjct: 570 SAVDEKTFNALLLGICKYGTLDEALDICEKMVKNNCLPDIH--TYTILLSGFCRKGKILP 627

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           AL  L++M  +   P    ++  L+ L+       A  ++  ++   G + D + YN + 
Sbjct: 628 ALVMLQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGLYADCIAYNSLM 687

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
              +K   V+ +++   +M +NE  P   +    +   +   +   ++ ++ Y++  GI 
Sbjct: 688 NGYLKGGNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIR 747

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEML 422
           P   +   L++GL   G +    +F E+M+
Sbjct: 748 PDNVTYRLLILGLSECGLIDIAVKFLEKMV 777



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 143/340 (42%), Gaps = 38/340 (11%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           N++++ L  NG F +  + ++ MK   + +  T+ +I   Y   G++  A+   + M   
Sbjct: 159 NILLNSLCTNGEFRKAEDMLQKMKSCCLSNSATYNTILHWYVKKGRFKAALCVLEDMERD 218

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
            ++ D+   N ++  +CR + +++RA   L R++K  + PD  ++  L+ G+  EG +  
Sbjct: 219 SIQADIYTYNIMIDKLCRIK-RSARAFLLLKRMRKDDLTPDECTYNTLINGFFGEGKINH 277

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT------- 288
           A   F  M+ R    P  V  Y T +    R +++D+AL  L  M+     P+       
Sbjct: 278 ARCVFNHML-RQTLVPS-VATYTTMIDGYCRNRRIDKALSVLSEMEITGVMPSELTYSAL 335

Query: 289 ------LKFFSNALDILVKLN------DSTHAVQLWDIM---------------MVFHGA 321
                 +     ALD++V L       + T    L D                 M+  G 
Sbjct: 336 LNGYCKVSMLGPALDLMVDLKSRGITINKTMCTILIDGFCQVGEISKAKQILKSMLEDGI 395

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            PD +TY+ +   + +  ++HE ++    M K+   P  +   T I     A   ++A++
Sbjct: 396 DPDVVTYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKVALK 455

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            +  I   G++      N LL      G +++   F + M
Sbjct: 456 HFVDIYRRGLVANPVIHNALLRAFYREGMITEAEHFRQYM 495



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 143/334 (42%), Gaps = 5/334 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF-D 171
           + + +++    + G+       +++M E GV+     +  + +     G+   A   F +
Sbjct: 610 HTYTILLSGFCRKGKILPALVMLQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFQE 669

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           ++   G+  D +A NSL++   +  N  +      +  +  V P+  S+ IL+ G+ K G
Sbjct: 670 IICKEGLYADCIAYNSLMNGYLKGGNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRG 729

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
              ++   +  MV R    P++V  Y   ++ L     +D A+KFL  M  E  FP    
Sbjct: 730 QFSKSLYLYKYMV-RKGIRPDNV-TYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDKLV 787

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           F   +    + +   +A++L++ M   H + P S T++ +   LI+   + +  +  HEM
Sbjct: 788 FDILITSFSEKSKMHNALRLFNCMKCLHLS-PSSKTFSAMINGLIRKNYLDQSHEVLHEM 846

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           ++   QP   +    +       E + A  +   +   GI+P E + + ++ GL   G+L
Sbjct: 847 LQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKL 906

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            +       M+   ++    T   L  +   ES+
Sbjct: 907 EEAVIVFSNMMRSGMVPTVATFTTLMHSLCKESK 940



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/307 (19%), Positives = 117/307 (38%), Gaps = 35/307 (11%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++    C  G  DEA+   + M  +    D+     LLS  CR+       +     
Sbjct: 576 TFNALLLGICKYGTLDEALDICEKMVKNNCLPDIHTYTILLSGFCRKGKILPALVMLQMM 635

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           ++K V PD  ++  LL G   EG V+ A+  F E++ + E      +AY + +   ++G 
Sbjct: 636 LEKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICK-EGLYADCIAYNSLMNGYLKGG 694

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM------------- 315
            V+   + +  M     +P    ++  +   VK    + ++ L+  M             
Sbjct: 695 NVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYR 754

Query: 316 ---------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
                                MV  G FPD L ++++     +  ++H   + F+ M   
Sbjct: 755 LLILGLSECGLIDIAVKFLEKMVLEGIFPDKLVFDILITSFSEKSKMHNALRLFNCMKCL 814

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
              P+    +  I  L+  +  + + E+ + +L+ G+ P       L+     +G +   
Sbjct: 815 HLSPSSKTFSAMINGLIRKNYLDQSHEVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRA 874

Query: 415 RRFAEEM 421
            R  EEM
Sbjct: 875 FRLKEEM 881



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 64/352 (18%), Positives = 138/352 (39%), Gaps = 46/352 (13%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++N+++    K G+F +     + M   G+     T+  +       G  D AV   + M
Sbjct: 717  SYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKM 776

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
             + G+  D +  + L+++   ++++   AL   N +K + + P   +F+ ++ G  ++  
Sbjct: 777  VLEGIFPDKLVFDILITSF-SEKSKMHNALRLFNCMKCLHLSPSSKTFSAMINGLIRKNY 835

Query: 233  VEEANKTFGEMVERFEWNPEHV----------------------------------LAYE 258
            ++++++   EM++     P H                                   +A  
Sbjct: 836  LDQSHEVLHEMLQ-VGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAES 894

Query: 259  TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
            + +  L R  +++EA+     M      PT+  F+  +  L K +    A+ L  +M + 
Sbjct: 895  SIIRGLCRCGKLEEAVIVFSNMMRSGMVPTVATFTTLMHSLCKESKIADALHLKRLMELC 954

Query: 319  HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
                 D ++YN++   L K+K + +    + EM      P      T    +      + 
Sbjct: 955  RLKV-DVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNVTTYITLTGAMYSTGRMQN 1013

Query: 379  AIEIWNYILENGILP----LEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
              E+   I E G++P    LE     +   +R   RL+ +RR  +E+  R +
Sbjct: 1014 GEELLEDIEERGLIPAFKQLENLERRMEDAIR---RLNMIRRCRKEVTFRGV 1062


>gi|42567170|ref|NP_194410.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332659854|gb|AEE85254.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 369

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 141/299 (47%), Gaps = 15/299 (5%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T +S+ + +C +    +AV     M   G+++DVV    L+  +C+       ALE L R
Sbjct: 15  TASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNR-LVVPALEVLKR 73

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI-R 266
           +K + + P+  +++ L+ G  K G + +A +   EM  + + NP +V+ +   +     R
Sbjct: 74  MKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK-KINP-NVITFSALIDAYAKR 131

Query: 267 GK--QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
           GK  +VD   K +  M  +   P +  +S+ +  L   N    A+++ D +M+  G  P+
Sbjct: 132 GKLSKVDSVYKMMIQMSID---PNVFTYSSLIYGLCMHNRVDEAIKMLD-LMISKGCTPN 187

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TY+ +     K+ RV +  K   +M +       ++C T I     A + ++A+ ++ 
Sbjct: 188 VVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFG 247

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA 439
           Y+  NG++P   S N +L GL   G +       E M   R    I+ Y + +H + KA
Sbjct: 248 YMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKA 306


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 121/277 (43%), Gaps = 4/277 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           R   RG  ++   +NL+V  L  +GR  + +  V  M   G+   + T+  + + +C  G
Sbjct: 242 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 301

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
              +A+  F+ MS  GV   VV   +L+ A+ ++         F   V++ + PD   + 
Sbjct: 302 NVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 361

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L+      GN++ A +  GEM E+    P+ V  Y T +  L    +VDEA K +  M 
Sbjct: 362 ALINSHSTSGNIDRAFEIMGEM-EKKRIAPDDV-TYNTLMRGLCLLGRVDEARKLIDEMT 419

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
                P L  ++  +       D   A+++ + MM   G  P  LTYN + + L KN + 
Sbjct: 420 ERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMM-NKGFNPTLLTYNALIQGLCKNGQG 478

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            + E    EM++N   P      + I  L   DE  I
Sbjct: 479 DDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAI 515



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 153/377 (40%), Gaps = 50/377 (13%)

Query: 91  SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-- 148
           S   P+ A++  R   R   ++   +N ++      GR +   + +R M+E G ++ P  
Sbjct: 126 SAGKPARALELLRQMPRPNAVT---YNTVIAGFCSRGRVQAALDIMREMRERGGIA-PNQ 181

Query: 149 -TFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQ----------- 195
            T+ ++   +C  G+ DEAV  FD M   G V+ + V  N+L+   C Q           
Sbjct: 182 YTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRD 241

Query: 196 -----------------------ENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
                                  + + + A E +  +  K + PD  ++ IL+ G  KEG
Sbjct: 242 RMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEG 301

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           NV++A + F  M  R       V+ Y   +  L +  QV E  K           P L  
Sbjct: 302 NVKKALEIFENMSRR--GVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVL 359

Query: 292 FSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
           + NAL  +   + S +  + ++IM  M      PD +TYN +   L    RV E  K   
Sbjct: 360 Y-NAL--INSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLID 416

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM +   QP  +   T I+      + + A+ I N ++  G  P   + N L+ GL   G
Sbjct: 417 EMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNG 476

Query: 410 RLSDVRRFAEEMLNRRI 426
           +  D     +EM+   I
Sbjct: 477 QGDDAENMVKEMVENGI 493



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 141/351 (40%), Gaps = 50/351 (14%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L   TF  +    C AGK   A+     M       + V  N++++  C +  +   AL+
Sbjct: 112 LCTTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSR-GRVQAALD 166

Query: 205 FLN--RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
            +   R +  + P+  ++  ++ GW K G V+EA K F EM+ + E  PE V+ Y   + 
Sbjct: 167 IMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM-YNALIG 225

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
                 ++D AL +   M       T+  ++  +  L      T A +L +  M   G  
Sbjct: 226 GYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVE-EMGGKGLA 284

Query: 323 PDSLTYNM----------------IFE-------------------CLIKNKRVHEVEKF 347
           PD  TYN+                IFE                    L K  +V E +K 
Sbjct: 285 PDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKL 344

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           F E ++   +P  +     I     +   + A EI   + +  I P + + N L+ GL  
Sbjct: 345 FDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCL 404

Query: 408 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR-DIFDSLERR 457
           LGR+ + R+  +EM  R I    VT + L   +     SM+ D+ D+L  R
Sbjct: 405 LGRVDEARKLIDEMTERGIQPDLVTYNTLISGY-----SMKGDVKDALRIR 450


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/389 (20%), Positives = 162/389 (41%), Gaps = 37/389 (9%)

Query: 93  DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151
           DS  +   +     RG       ++ ++  L K    ++    +  M ++GV+    T+ 
Sbjct: 216 DSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 275

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
           SI   YC +G+  EA+ +   M   GVE +VV  +SL++ +C+    T     F +  K+
Sbjct: 276 SILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH------------------ 253
            ++PD  ++  LL+G+  +G + E +     MV R    P+H                  
Sbjct: 336 GLEPDIATYRTLLQGYATKGALVEMHALLDLMV-RNGIQPDHHVFNILICAYAKQEKVDQ 394

Query: 254 ----------------VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
                           V+ Y T +  L +   VD+A+ +   M  E   P +  +++ + 
Sbjct: 395 AMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIH 454

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
            L   +    A +L  + M+  G   +++ +N I +   K  RV E EK F  M++   +
Sbjct: 455 GLCTCDKWDKAEELI-LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 513

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
           P  +   T I     A + + A ++   ++  G+ P   +   L+ G   + R+ D    
Sbjct: 514 PDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALAL 573

Query: 418 AEEMLNRRILIYEVTMHKLKKAFYNESRS 446
            +EM++  +    +T + + +  ++  R+
Sbjct: 574 FKEMVSSGVSPNIITYNIILQGLFHTRRT 602



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 153/350 (43%), Gaps = 11/350 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLP---TFASIFDSYCGAGKYDEAVMS 169
           +++N ++  L    R ++    + +M +D G  S P   ++ ++ + +   G  D+A  +
Sbjct: 164 FSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYST 223

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWE 228
           +  M   G+  DVV  +S+++A+C+ +    +A+E LN  VK  V PD  ++  +L G+ 
Sbjct: 224 YHEMLDRGILPDVVTYSSIIAALCKAQ-AMDKAMEVLNTMVKNGVMPDCMTYNSILHGYC 282

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
             G  +EA  T  +M  R +    +V+ Y + +  L +  +  EA K    M      P 
Sbjct: 283 SSGQPKEAIGTLKKM--RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD 340

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  +   L              L D +MV +G  PD   +N++     K ++V +    F
Sbjct: 341 IATYRTLLQGYATKGALVEMHALLD-LMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVF 399

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            +M ++   P  +   T I +L  +   + A+  +  +++ G+ P       L+ GL   
Sbjct: 400 SKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTC 459

Query: 409 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD--IFDSLER 456
            +         EML+R I +  +  + +  +   E R +    +FD + R
Sbjct: 460 DKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVR 509



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 134/306 (43%), Gaps = 19/306 (6%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDS 219
           ++A   FD +   G    +  +N  L+ + R     + A+   NR+ +     V P   +
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVARHS--PAAAVSRYNRMARAGAGKVTPTVHT 94

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKF-L 277
           +AIL+    + G ++      G +V++ F  +    + +   L  L   K+  +A+   L
Sbjct: 95  YAILIGCCCRAGRLDLGFAALGNVVKKGFRVD---AITFTPLLKGLCADKRTSDAMDIVL 151

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF--PDSLTYNMIFECL 335
           R M    C P +  ++N L  L   N S  A++L  +M    G    PD ++YN +    
Sbjct: 152 RRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGF 211

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
            K     +    +HEM+     P  +  ++ I  L  A   + A+E+ N +++NG++P  
Sbjct: 212 FKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC 271

Query: 396 ASANELLVGLRNLGR----LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIF 451
            + N +L G  + G+    +  +++   + +   ++ Y   M+ L K     S   R IF
Sbjct: 272 MTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKN--GRSTEARKIF 329

Query: 452 DSLERR 457
           DS+ +R
Sbjct: 330 DSMTKR 335



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 119/281 (42%), Gaps = 5/281 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LN 207
           T+A +    C AG+ D    +   +   G   D +    LL  +C  + +TS A++  L 
Sbjct: 94  TYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLC-ADKRTSDAMDIVLR 152

Query: 208 RVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLI 265
           R+ ++   PD  S+  LL+G   E   +EA +    M  +R   +P  V++Y T L    
Sbjct: 153 RMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFF 212

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           +    D+A      M      P +  +S+ +  L K      A+++ +  MV +G  PD 
Sbjct: 213 KEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNT-MVKNGVMPDC 271

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TYN I      + +  E      +M  +  +P  +  ++ +  L        A +I++ 
Sbjct: 272 MTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDS 331

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           + + G+ P  A+   LL G    G L ++    + M+   I
Sbjct: 332 MTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI 372



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 105/253 (41%), Gaps = 12/253 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG  L+   +N ++D   K GR  +      +M   GV   + T+ ++ D  C AGK DE
Sbjct: 475 RGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDE 534

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A      M   GV+ D+V   +L++  CR          F   V   V P+  ++ I+L+
Sbjct: 535 ATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQ 594

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G         A + +  + +        +  Y   L  L +    DEAL+  + +    C
Sbjct: 595 GLFHTRRTAAAKELYVSITK--SGTQLELSTYNIILHGLCKNNLTDEALRMFQNL----C 648

Query: 286 FPTLKFFSNALDI----LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
              L+  +   +I    L+K      A  L+      +G  PD  TY+++ E LI+   +
Sbjct: 649 LTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSA-NGLVPDVRTYSLMAENLIEQGSL 707

Query: 342 HEVEKFFHEMIKN 354
            E++  F  M +N
Sbjct: 708 EELDDLFLSMEEN 720



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 3/209 (1%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F SI DS+C  G+  E+   FD+M   GV+ D++  N+L+   C             + V
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMV 543

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
              V PD  ++  L+ G+ +   +++A   F EMV        +++ Y   L  L   ++
Sbjct: 544 SVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVS--SGVSPNIITYNIILQGLFHTRR 601

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
              A +    +        L  ++  L  L K N +  A++++  + +      ++ T+N
Sbjct: 602 TAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL-ETRTFN 660

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
           ++   L+K  R+ E +  F     N   P
Sbjct: 661 IMIGALLKCGRMDEAKDLFAAHSANGLVP 689


>gi|297807171|ref|XP_002871469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317306|gb|EFH47728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 602

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 175/419 (41%), Gaps = 60/419 (14%)

Query: 26  SPTSHN--PHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDL 83
           SP +H+  PH+ T   F +  D   IS+    + E         +ESAL  TGI P+  L
Sbjct: 49  SPAAHDSTPHQITVLDF-SKTDLSTISN----LLENTNVVPGSSLESALDETGIEPSLQL 103

Query: 84  VHEVLQLSYDSPSSAVDFFRWA--GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV--RVM 139
           V  +      SP      F+WA    G  LSP  ++ +++ L K   FE  W+ V  RV 
Sbjct: 104 VQALFDRLSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVINSLCKAREFEIAWSLVFDRVR 163

Query: 140 KEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH----GVEQDVVAVNSLLSAIC 193
            ++G  ++S  TF  +   Y  AG   +A+ +F+    +        ++  +  LL A+C
Sbjct: 164 SDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYEPVCKSASELKLLEVLLDALC 223

Query: 194 RQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
           + E     A  +L R + ++D    P    F ILL GW +   +++A K + EM +    
Sbjct: 224 K-EGYVREASVYLERRRGMMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEM-KAMNV 281

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMK------------------GE-------- 283
            P  V+ Y T +    R ++V+ A++ L  MK                  GE        
Sbjct: 282 KPT-VVTYGTLIEGYCRMRRVEIAMEILEEMKMAEMELTFMVFNPIIDGLGEAGRLSEAL 340

Query: 284 ---------NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
                       PT+  +++ +    K  D   A ++  +MM   G  P + TYN  F+ 
Sbjct: 341 GMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMT-RGVEPTTSTYNHFFKY 399

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
             K+ +  E    + ++I+    P  L     + ML +  +  +AI++   +   GI P
Sbjct: 400 FSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAIQVNKEMKNRGIDP 458


>gi|356555026|ref|XP_003545840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Glycine max]
          Length = 587

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 135/312 (43%), Gaps = 43/312 (13%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +A  ++++ L K+G    +W   + M + GV+ ++  +  +F +   +G  + A    + 
Sbjct: 162 HACTVLLNSLLKDGVTHMVWKIYKRMVQVGVVPNIYIYNCLFHACSKSGDVERAEQLLNE 221

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M + GV QD+   N+LLS  C++      AL   NR+ ++ ++ D  S+  L+ G+ KEG
Sbjct: 222 MDVKGVLQDIFTYNTLLSLYCKK-GMHYEALSIQNRMEREGINLDIVSYNSLIYGFCKEG 280

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            + EA + F E+       P HV  Y T +    +  +++EALK  ++M+ +        
Sbjct: 281 RMREAMRMFSEIKNA---TPNHV-TYTTLIDGYCKTNELEEALKMCKLMEAK-------- 328

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
                                       G +P  +TYN I   L ++ R+ +  K  +EM
Sbjct: 329 ----------------------------GLYPGVVTYNSILRKLCQDGRIRDANKLLNEM 360

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
            + + Q   + C T I       + + A++  N +LE G+ P   +   L+ G      L
Sbjct: 361 SERKLQADNITCNTLINAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKTNEL 420

Query: 412 SDVRRFAEEMLN 423
              +     ML+
Sbjct: 421 ESAKELMFSMLD 432



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 108/247 (43%), Gaps = 6/247 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N +     K+G  E+    +  M   GVL  + T+ ++   YC  G + EA+   + 
Sbjct: 197 YIYNCLFHACSKSGDVERAEQLLNEMDVKGVLQDIFTYNTLLSLYCKKGMHYEALSIQNR 256

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G+  D+V+ NSL+   C+ E +   A+   + +K    P+  ++  L++G+ K   
Sbjct: 257 MEREGINLDIVSYNSLIYGFCK-EGRMREAMRMFSEIKN-ATPNHVTYTTLIDGYCKTNE 314

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +EEA K   +++E     P  V+ Y + L  L +  ++ +A K L  M            
Sbjct: 315 LEEALK-MCKLMEAKGLYPG-VVTYNSILRKLCQDGRIRDANKLLNEMSERKLQADNITC 372

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  ++   K+ D   A++  + M+   G  PD  TY  +     K   +   ++    M+
Sbjct: 373 NTLINAYCKIGDLKSALKFKNKMLEA-GLKPDPFTYKALIHGFCKTNELESAKELMFSML 431

Query: 353 KNEWQPT 359
              + P+
Sbjct: 432 DAGFTPS 438



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 137/328 (41%), Gaps = 45/328 (13%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFASIFDSYCGA 160
           R    G  L   ++N ++    K GR   M  A+R+  E  +   +  T+ ++ D YC  
Sbjct: 256 RMEREGINLDIVSYNSLIYGFCKEGR---MREAMRMFSEIKNATPNHVTYTTLIDGYCKT 312

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDS 219
            + +EA+    +M   G+   VV  NS+L  +C Q+ +   A + LN + ++ +  D  +
Sbjct: 313 NELEEALKMCKLMEAKGLYPGVVTYNSILRKLC-QDGRIRDANKLLNEMSERKLQADNIT 371

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
              L+  + K G+++ A K   +M+E   + +P     Y+  +    +  +++ A + + 
Sbjct: 372 CNTLINAYCKIGDLKSALKFKNKMLEAGLKPDP---FTYKALIHGFCKTNELESAKELMF 428

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M      P+   +S  +D   K  D+  AV       +  G   D   Y  +     K 
Sbjct: 429 SMLDAGFTPSYCTYSWIVDGYNK-KDNMDAVLALPDEFLSRGICLDVSVYRALIRSSCKV 487

Query: 339 KRVHEVEKFFHEM----IKNE-----------WQPTPLNCATA-----------ITMLL- 371
           +R+   E+ F+ M    I  E           W    ++ A++           IT+ L 
Sbjct: 488 ERIQCAERLFYHMEGKGISGESVIYTSIAYAYWNVGNVSAASSMLEEMARRRLMITVKLY 547

Query: 372 ------DADEPEIAIEIWNYILENGILP 393
                 DA+E +++   WN++++ G++ 
Sbjct: 548 RCFSTSDANENKVSQIFWNHVMDRGLMS 575


>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 884

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 162/385 (42%), Gaps = 56/385 (14%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           YA+N++++     GR       + +M ++G   SL TF++I  ++C  G   EA   F+ 
Sbjct: 314 YAYNILINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVVEARKIFEG 373

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           +   G+  +V   N+L+S   +  +     + +     K + PDG +F IL+ G  K G 
Sbjct: 374 IQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAGNYKYGK 433

Query: 233 VEEANKTFGEMVERFEWNPEHVLA----YETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
             ++ + F       +W+   ++     Y+  +  L    Q+DEA++FL  M  +   P+
Sbjct: 434 EADSYELFR------DWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPS 487

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  F++ +    +     +A + + IM++F G  P S T + +   L K  R+ E     
Sbjct: 488 VVAFNSVIAAYSRAGFEDNAHKAYKIMLMF-GLVPSSSTCSSMLLGLSKKGRLQEARDLL 546

Query: 349 HEMIKNEWQPTPLNCATAITMLLD------------------------------------ 372
           ++MI    +  P+N   A T+LLD                                    
Sbjct: 547 YKMID---KGLPVN-KVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDG 602

Query: 373 ---ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
              A   E A E ++ + + G +P     N L+ GL N G+L +  +   EM  + +L  
Sbjct: 603 LSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPD 662

Query: 430 EVTMHKLKKAFYNESRSMRDIFDSL 454
             T + +   F  E R M+  FD+ 
Sbjct: 663 IFTTNIIINGFCKEGR-MKSAFDAF 686



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 148/343 (43%), Gaps = 20/343 (5%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEA 166
           G R S  A +++  +L + G +  +W  +R M  DG       F  +   +C  G    A
Sbjct: 238 GVRPSSSAISILFRLLLRVGDYGSVWKLLRGMIRDGPRPCNHNFNIMILCFCQKGYLRVA 297

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLE 225
                VM     E DV A N L++A  R   +TS AL FL+  +K    P   +F+ ++ 
Sbjct: 298 ESLLFVMPKFCCEPDVYAYNILINAY-RIRGRTSDALGFLHLMIKNGCKPSLITFSTIIT 356

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            +  EGNV EA K F E ++    +P +V  Y T +    + + V +A      M+ +  
Sbjct: 357 AFCNEGNVVEARKIF-EGIQEVGLSP-NVAMYNTLMSGYFKARDVCQANMLYEEMRDKGI 414

Query: 286 FPTLKFFSNALDILVKLN-------DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            P    F    +ILV  N       DS    + W +        PD   Y++    L   
Sbjct: 415 APDGATF----NILVAGNYKYGKEADSYELFRDWSL----SSLVPDCSLYDVSVAGLCWA 466

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
            ++ E  +F  +M++    P+ +   + I     A   + A + +  +L  G++P  ++ 
Sbjct: 467 GQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTC 526

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
           + +L+GL   GRL + R    +M+++ + + +V    L   ++
Sbjct: 527 SSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYF 569



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 124/299 (41%), Gaps = 8/299 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   S  A+N ++    + G  +    A ++M   G++ S  T +S+       G+  E
Sbjct: 482 KGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQE 541

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A      M   G+  + VA   LL    +  +       +     + + PD  +F+  ++
Sbjct: 542 ARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFID 601

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K G VEEA + F EM ++  + P +   Y + +  L    ++ EALK  R M+ +  
Sbjct: 602 GLSKAGLVEEAYEAFSEMSKK-GFVPNN-FVYNSLIHGLCNCGKLHEALKLEREMRQKGL 659

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH--GAFPDSLTYNMIFECLIKNKRVHE 343
            P + F +N   I+            +D     H  G  PD++TYN +     K   +  
Sbjct: 660 LPDI-FTTNI--IINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVS 716

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
            ++F ++M  + W P        I     + +   A+ + + ++  G++P   + N ++
Sbjct: 717 ADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVGVVPNTVTYNTMM 775



 Score = 45.1 bits (105), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 7/205 (3%)

Query: 78  IPTPDLVHEVLQLSY----DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMW 133
           +P   +   VL   Y    D+  +   ++    RG      A++  +D L K G  E+ +
Sbjct: 554 LPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAY 613

Query: 134 NAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
            A   M + G V +   + S+    C  GK  EA+     M   G+  D+   N +++  
Sbjct: 614 EAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGF 673

Query: 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           C++    S    F       V PD  ++  L+ G+ K  ++  A++   +M     W+P+
Sbjct: 674 CKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYAS-GWDPD 732

Query: 253 HVLAYETFLITLIRGKQVDEALKFL 277
            +  Y   +      +++  A+  L
Sbjct: 733 -ITTYNIRIQGFCSSQKISRAVTML 756


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 6/293 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +  ++ VL   GR     + +  M   G   ++ T+  + ++ C    +++A+   D 
Sbjct: 144 YTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDE 203

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   G   ++V  N +++ +CR E +   A E LNR+      PD  S+  LL+G     
Sbjct: 204 MRAKGCTPNIVTYNVIINGMCR-EGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASK 262

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             ++  + F EM+E+    P  V  ++  +    RG  V+ A++ L  M    C      
Sbjct: 263 RWDDVEELFAEMMEK-NCMPNEV-TFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTL 320

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
            +  ++ + K      A +L + M  + G  PD+++Y  + + L + +R  + ++  +EM
Sbjct: 321 CNIVINSICKQGRVDDAFKLLNDMGSY-GCNPDTISYTTVLKGLCRAERWDDAKELLNEM 379

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
           ++N   P  +   T I +L      E AI +   + E+G      + N L+ G
Sbjct: 380 VRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNG 432



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/376 (20%), Positives = 157/376 (41%), Gaps = 36/376 (9%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASI-FDSYCGAGKYDEAVMSFDVMS 174
           +++++    + G  E+    +  M E G  +  T  +I  +S C  G+ D+A    + M 
Sbjct: 286 FDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMG 345

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
            +G   D ++  ++L  +CR E +   A E LN  V+    P+  +F   +    ++G +
Sbjct: 346 SYGCNPDTISYTTVLKGLCRAE-RWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLI 404

Query: 234 EEANKTFGEM----------------------------VERFEWNP--EHVLAYETFLIT 263
           E+A     +M                            +E F   P   + + Y T L  
Sbjct: 405 EQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTG 464

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L   +++D A + +  M   +C P +  F+  +    +      A++L + MM  HG  P
Sbjct: 465 LCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMME-HGCTP 523

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           + +TYN + + + K+    +  +  H ++     P  +  ++ I +L   D  E A++++
Sbjct: 524 NLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLF 583

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
           + + + G+ P     N++L+GL     + +   F   M++   +  E T   L +   +E
Sbjct: 584 HVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHE 643

Query: 444 S--RSMRDIFDSLERR 457
              +  +D+   L  R
Sbjct: 644 GLLKEAQDLLSVLCSR 659



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 129/319 (40%), Gaps = 15/319 (4%)

Query: 130 EQMWNAVRVMKEDGVLS-----LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
           E +  AVR+++  G        +     +  + C  G+  +A          G   DV A
Sbjct: 54  EDLAGAVRLVERSGSCDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFA 113

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
            N+L++  CR       A   +  +   V PD  ++  L+      G V +A     +M+
Sbjct: 114 YNTLVAGYCRY-GHLDAARRLIGSMP--VAPDAYTYTPLIRVLCDRGRVADALSLLDDML 170

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
            R    P +V+ Y   L  + R    ++A+  L  M+ + C P +  ++  ++ + +   
Sbjct: 171 RR-GCQP-NVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGR 228

Query: 305 STHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
              A +L +  +  +G  PD+++Y  + + L  +KR  +VE+ F EM++    P  +   
Sbjct: 229 VDDARELLN-RLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFD 287

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM--- 421
             I         E AI++   + E+G        N ++  +   GR+ D  +   +M   
Sbjct: 288 MLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSY 347

Query: 422 -LNRRILIYEVTMHKLKKA 439
             N   + Y   +  L +A
Sbjct: 348 GCNPDTISYTTVLKGLCRA 366



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/411 (20%), Positives = 156/411 (37%), Gaps = 62/411 (15%)

Query: 36  TRPRFPTHLDAPYISSS--ARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LS 91
           TRP  P   +AP  +S+   R+I       +   +E + +C G  P   L  ++++    
Sbjct: 32  TRPESP---NAPNPASAHLRRLIAREDLAGAVRLVERSGSCDGEAPDVYLCTKLIRNLCR 88

Query: 92  YDSPSSAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-- 148
               S A    R A G G  +  +A+N +V    + G  +    A R +    + S+P  
Sbjct: 89  RGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLD----AARRL----IGSMPVA 140

Query: 149 ----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
               T+  +    C  G+  +A+   D M   G + +VV    LL A+CR      +A+ 
Sbjct: 141 PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSG-FEQAMA 199

Query: 205 FLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            L+ ++ K   P+  ++ +++ G  +EG V++A +    +   + + P+ V +Y T L  
Sbjct: 200 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRL-PSYGFQPDTV-SYTTLLKG 257

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L   K+ D+  +    M  +NC P                                    
Sbjct: 258 LCASKRWDDVEELFAEMMEKNCMP------------------------------------ 281

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           + +T++M+     +   V    +   +M ++        C   I  +      + A ++ 
Sbjct: 282 NEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLL 341

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
           N +   G  P   S   +L GL    R  D +    EM+       EVT +
Sbjct: 342 NDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFN 392



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 81/215 (37%), Gaps = 7/215 (3%)

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
           +P  V AY T +    R   +D A + +  M      P    ++  + +L        A+
Sbjct: 107 SPVDVFAYNTLVAGYCRYGHLDAARRLIGSMPVA---PDAYTYTPLIRVLCDRGRVADAL 163

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
            L D M+   G  P+ +TY ++ E + +N    +      EM      P  +     I  
Sbjct: 164 SLLDDML-RRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIING 222

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
           +      + A E+ N +   G  P   S   LL GL    R  DV     EM+ +  +  
Sbjct: 223 MCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPN 282

Query: 430 EVTMHKLKKAFYNES---RSMRDIFDSLERRCKTS 461
           EVT   L + F       R+++ +    E  C T+
Sbjct: 283 EVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATN 317


>gi|356510681|ref|XP_003524064.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial-like [Glycine max]
          Length = 450

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 163/394 (41%), Gaps = 48/394 (12%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGK 125
           +E  L    I  TP+LV  VL+   ++P+ ++ FF WA      SP +  +  +V  L +
Sbjct: 55  LERTLNKLRITVTPELVFRVLRACSNNPTESLRFFNWARTHPSYSPTSLEFEQIVTTLAR 114

Query: 126 NGRFEQMWNAVRVMKEDGVLSL--PTFASIFDSYCGAGKYDEAVMSFDVMS-MHGVEQDV 182
              ++ MW  +R +     LSL     AS+ ++Y      D++V  F+    +    Q +
Sbjct: 115 ANTYQSMWALIRQVTLHHRLSLSPSAVASVIEAYGDNRHVDQSVQVFNKSPLLLNCPQTL 174

Query: 183 VAVNSLLSAICRQENQTSRALEFLNR--VKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
              N+LL ++C   N+       L R  ++K + PD  ++A+L+  W   G + EA    
Sbjct: 175 PLYNALLRSLC--HNKLFHGAYALVRRMLRKGLRPDKTTYAVLVNAWCSNGKLREAKLFL 232

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            EM E+  +NP  V   +  +  L+    V+ A   +R M  +   P +  F+  ++ + 
Sbjct: 233 EEMSEK-GFNPP-VRGRDLLVEGLLNAGYVESAKGMVRNMIKQGSVPDVGTFNAVVETVS 290

Query: 301 KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
           K  D    V L+  +    G  PD  TY ++   + K+  V E  +  +  I++  +P P
Sbjct: 291 K-EDVQFCVGLYHEVCAL-GMAPDVNTYKILVPAVSKSGMVDEAFRLLNNFIEDGHKPFP 348

Query: 361 LNCATAITMLLDADEPEIA--------------------------------IEIWNYIL- 387
              A  I  L    + + A                                +E  NYI  
Sbjct: 349 SLYAPVIKALCRRGQFDDAFCFFGDMKAKAHPPNRPLYTMLITMCGRAGKFVEAANYIFE 408

Query: 388 --ENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
             E G++P+    + +  GL+N G+    RR  E
Sbjct: 409 MTEMGLVPISRCFDMVTDGLKNCGKHDLARRVQE 442


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 137/338 (40%), Gaps = 17/338 (5%)

Query: 121 DVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
           DV G  GR  +M N   V+          + +  D  C  G   +A    + M   G++ 
Sbjct: 234 DVPGLFGRMVEMGNPPNVVN---------YTAWVDGLCKRGYVKQAFHVLEEMVGKGLKP 284

Query: 181 DVVAVNSLLSAICRQENQTSRALE-FLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANK 238
           +V    SL+  +C+    T RA   FL  VK     P+  ++ +++ G+ KEG +  A  
Sbjct: 285 NVYTHTSLIDGLCKI-GWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEM 343

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
             G MVE  +    +   Y T +    RG   D A + +  MK E   P +  ++  +  
Sbjct: 344 LLGRMVE--QGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGG 401

Query: 299 LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
             K      A ++   M    G  PD +TY M+     K   +      F++M +N   P
Sbjct: 402 FCKKGKIQQAYKVLR-MATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHP 460

Query: 359 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFA 418
                 T I M     + E + ++++  L  G++P + +   ++ G   +G+ +   +  
Sbjct: 461 DIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVF 520

Query: 419 EEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 454
           E M+    L   +T   L      ESR    R +F+++
Sbjct: 521 ERMVQHGCLPDPITYGALISGLCKESRLEEARALFETM 558



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/334 (19%), Positives = 145/334 (43%), Gaps = 9/334 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + + +M+    K G+  +    +  M E G+  +  T+ ++ D +C  G +D A    + 
Sbjct: 323 HTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNK 382

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEG 231
           M + G   ++   N+++   C++  +  +A + L     + + PD  ++ +L+    K+G
Sbjct: 383 MKLEGFLPNIYTYNAIIGGFCKK-GKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQG 441

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           ++  A   F +M E    +P+ +  Y T +    + +Q++++ +           PT + 
Sbjct: 442 HITYALDLFNQMAEN-SCHPD-IDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQT 499

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +++ +    ++  ST A+++++  MV HG  PD +TY  +   L K  R+ E    F  M
Sbjct: 500 YTSMIAGYCRVGKSTSALKVFE-RMVQHGCLPDPITYGALISGLCKESRLEEARALFETM 558

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +     P  + C T        D+  IA+   + + +        +A+ L+  L  +  L
Sbjct: 559 LDKHMVPCDVTCVTLAYEYCRRDKTTIAVSFLDGLDKR---QQAHAADALVRKLSAVDNL 615

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
                F + +L++   +   T      + Y  +R
Sbjct: 616 DAASLFLKNVLDKHYAVDHATYTSFINSCYESNR 649


>gi|449507993|ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37230-like [Cucumis sativus]
          Length = 760

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 156/329 (47%), Gaps = 22/329 (6%)

Query: 37  RPRFPTHLDAPYISSSARIICEILAHAS-SDDIESALACTGIIPTPD--LVHEVLQLSYD 93
           RPR P  L+         IIC+++A+   +  +++++    ++P  D  LV+ VL  +  
Sbjct: 84  RPRDPEKLEX--------IICKMMANREWTTRLQNSI--RSLVPQFDHNLVYNVLHAAKK 133

Query: 94  SPSSAVDFFRW---AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           S   A++FFRW   AG  Q      + + +++LG+  +       +  M   GV      
Sbjct: 134 S-EHALNFFRWVERAGLFQHDRETHFKI-IEILGRASKLNHARCILLDMPNKGVQWDEDL 191

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  + +SY  AG   EAV  F  M   GVE+ V + ++L   I R+         F   +
Sbjct: 192 FVVLIESYGKAGIVQEAVKIFQKMKELGVERSVKSYDALFKEIMRRGRYMMAKRYFNAML 251

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + ++P   ++ ++L G+     +E A + + +M  R   +P+ V+ Y T +    R K 
Sbjct: 252 NEGIEPIRHTYNVMLWGFFLSLRLETAKRFYEDMKSR-GISPD-VVTYNTMINGYCRFKM 309

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           ++EA +F   MKG+N  PT+  ++  +   V ++ +  A++L++ M    G  P+ +TY+
Sbjct: 310 MEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRLFEEMKA-AGEKPNDITYS 368

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
            +   L   +++ E  K   EM+   + P
Sbjct: 369 TLLPGLCDAEKLPEARKILTEMVTRHFAP 397



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 13/225 (5%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+   K V  D D F +L+E + K G V+EA K F +M    VER       V +Y+  
Sbjct: 177 LLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKELGVER------SVKSYDAL 230

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL-DILVKLNDSTHAVQLWDIMMVFH 319
              ++R  +   A ++   M  E   P    ++  L    + L   T A + ++ M    
Sbjct: 231 FKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLET-AKRFYEDMKS-R 288

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
           G  PD +TYN +     + K + E E+FF EM      PT ++  T I   +     + A
Sbjct: 289 GISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDA 348

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           + ++  +   G  P + + + LL GL +  +L + R+   EM+ R
Sbjct: 349 LRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTR 393


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 134/306 (43%), Gaps = 4/306 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +F ++    C AG  +E      VM    V  DV   ++L++ +C++      +L F   
Sbjct: 179 SFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEM 238

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K + P+G +F +L++G  K G V+ A K F  M+ +    P+ ++ Y   +  L +  
Sbjct: 239 CGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQ-GVRPD-LVTYNALINGLCKVG 296

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            + EA + +  M      P    F+  +D   K  D   A+++    MV  G   D + +
Sbjct: 297 DLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKR-RMVEEGIELDDVAF 355

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
            ++   L ++ RVH+ E+   +M+   ++P        +          +  ++   +  
Sbjct: 356 TVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQS 415

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 448
           +G +P   + N L+ GL   G++ + +   + MLN  +   ++T + L +       S+ 
Sbjct: 416 DGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLEGHSKHGSSVD 475

Query: 449 -DIFDS 453
            DIF+S
Sbjct: 476 VDIFNS 481



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 115/279 (41%), Gaps = 48/279 (17%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +   +C  G    A + FD +   G+   VV+ N+L+S  C+     + A+E   R+
Sbjct: 145 FNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCK-----AGAVEEGFRL 199

Query: 210 KKIVD-----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           K +++     PD  +F+ L+ G  KEG ++E +  F EM  +    P  V  +   +   
Sbjct: 200 KGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGK-GLVPNGV-TFTVLIDGQ 257

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            +G +VD ALK  +                                    MM+  G  PD
Sbjct: 258 CKGGKVDLALKNFQ------------------------------------MMLAQGVRPD 281

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TYN +   L K   + E  +  +EM  +  +P  +   T I       + E A+EI  
Sbjct: 282 LVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKR 341

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
            ++E GI   + +   L+ GL   GR+ D  R   +ML+
Sbjct: 342 RMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLS 380



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 130/325 (40%), Gaps = 45/325 (13%)

Query: 102 FRWAG--RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDS 156
           FR  G    +R+ P  + ++ +++ L K GR ++       M   G++ +  TF  + D 
Sbjct: 197 FRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDG 256

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDP 215
            C  GK D A+ +F +M   GV  D+V  N+L++ +C+       A   +N +    + P
Sbjct: 257 QCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKV-GDLKEARRLVNEMSASGLRP 315

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D  +F  L++G  K G++E A +    MVE  E      +A+   +  L R  +V +A +
Sbjct: 316 DRITFTTLIDGCCKYGDMESALEIKRRMVE--EGIELDDVAFTVLISGLCRDGRVHDAER 373

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
            LR M                                    +  G  PD  TY M+ +C 
Sbjct: 374 MLRDM------------------------------------LSAGFKPDDPTYTMVVDCF 397

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
            K   V    K   EM  +   P  +     +  L    + + A  + + +L  G+ P +
Sbjct: 398 CKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPND 457

Query: 396 ASANELLVGLRNLGRLSDVRRFAEE 420
            + N LL G    G   DV  F  E
Sbjct: 458 ITYNILLEGHSKHGSSVDVDIFNSE 482


>gi|255660924|gb|ACU25631.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 484

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 136/288 (47%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  + +S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHGAKNS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + ++L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   +   ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 IMRRGRFMMAKRYFNKMLSXGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG+N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  + G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGY-GIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPT 289



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 11/226 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELGVER------TIKSYDAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M      PT   F N +     L+        +   M    
Sbjct: 122 FKVIMRRGRFMMAKRYFNKMLSXGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++ I
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYI 286



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 23/181 (12%)

Query: 135 AVRVMKEDGVLSLPT----FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV------- 183
           A  V+K    LS+PT    +  + ++YC AG+YD+AV   D +    +E+D++       
Sbjct: 310 AADVLKSMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDKL----IEKDIIVRPQSTL 365

Query: 184 -----AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
                A N ++  +C    QTS+A   + ++ K+   D  +   L+ G  +EG+ + A +
Sbjct: 366 HMEPSAYNPIVEYLC-NNGQTSKAEALVRQLMKLGVQDPTALNTLIRGHSQEGSPDSAFE 424

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
               M+ R   + +   AY++ + + ++  +  +A   L  M   +  P    F + ++ 
Sbjct: 425 LLKIMLRRKVGSEKS--AYDSLVQSYLKKSEPADAKAALDSMIENDHLPDSSLFRSVMES 482

Query: 299 L 299
           L
Sbjct: 483 L 483


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 154/358 (43%), Gaps = 49/358 (13%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + + Y + + + VLG+ G+  + +  ++ M ++G    + T+  + D+ C A K D A
Sbjct: 255 GLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCA 314

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-----SFA 221
              F  M     + D V   +LL          +R L+ +N+    ++ DG      +F 
Sbjct: 315 KEVFAKMKTGRHKPDRVTYITLLDRF-----SDNRDLDSVNQFWSEMEKDGHVPDVVTFT 369

Query: 222 ILLEGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           IL++   K GN  EA   F ++ V R +    ++  Y T +  L+R  ++D+AL+    M
Sbjct: 370 ILVDALCKAGNFGEA---FAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNM 426

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM------------------------- 315
           +     PT   +   +D   K  DS  A++ ++ M                         
Sbjct: 427 ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRD 486

Query: 316 ----MVFHGA-----FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
                +F+G       PDS+TYNM+ +C  K   + E  K   EM++N  +P  +   + 
Sbjct: 487 REAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSL 546

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           I  L  AD  + A +++  + E  + P   + N LL GL   G++ +     E M+ +
Sbjct: 547 INTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQK 604



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 124/309 (40%), Gaps = 74/309 (23%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL------------------------------ 145
           + ++VD L K G F + +  + VM++ G+L                              
Sbjct: 368 FTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNME 427

Query: 146 ------SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT 199
                 +  T+    D Y  +G    A+ +F+ M   G+  ++VA N+ L ++ +   + 
Sbjct: 428 SLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKA-GRD 486

Query: 200 SRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE------------- 245
             A +    +K I + PD  ++ ++++ + K G ++EA K   EMVE             
Sbjct: 487 REAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSL 546

Query: 246 ---------------------RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
                                  +  P  V+ Y T L  L +  ++ EA++    M  + 
Sbjct: 547 INTLYKADRVDEAWKMFMRMKEMKLKPT-VVTYNTLLAGLGKNGKIQEAIELFEGMVQKG 605

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C P    F+   D L K ++ T A+++   MM   G  PD  TYN I   L+KN +V E 
Sbjct: 606 CPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDM-GCVPDVFTYNTIIFGLVKNGQVKEA 664

Query: 345 EKFFHEMIK 353
             FFH+M K
Sbjct: 665 MCFFHQMKK 673



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 157/370 (42%), Gaps = 52/370 (14%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS----F 170
           +N ++  LGKNG+ ++       M + G   +  TF ++FD  C   K DE  ++    F
Sbjct: 578 YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLC---KNDEVTLALKMLF 634

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
            +M M G   DV   N+++  + +   Q   A+ F +++KK+V PD  +   LL G  K 
Sbjct: 635 KMMDM-GCVPDVFTYNTIIFGLVKN-GQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKA 692

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL-RVMKGENC---- 285
           G +E+A K     +      P + L +E  + +++    +D A+ F  R++    C    
Sbjct: 693 GLIEDAYKIIANFLYSCADQPAN-LFWEDLMGSILAEAGIDNAVSFSERLVANGICRDGD 751

Query: 286 ---FPTLKF----------------FSNALDILVKL------------NDSTHAVQLWDI 314
               P +++                F+  L +  KL             D     Q   +
Sbjct: 752 SILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFL 811

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
            +   G  PD  TYN + +   K+ ++ E+ + + EM  +E +P  +     I+ L+ A 
Sbjct: 812 QVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAG 871

Query: 375 EPEIAIEI-WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIY 429
             + A+++ ++ + +    P   +   L+ GL   GRL + ++  E M +        IY
Sbjct: 872 NVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIY 931

Query: 430 EVTMHKLKKA 439
            + ++   KA
Sbjct: 932 NILINGFGKA 941



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 146/355 (41%), Gaps = 25/355 (7%)

Query: 81  PDL----VHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWN 134
           PDL    V  VL +S+    S+  +F+       L  +    N M++ L  +G+ E+M  
Sbjct: 83  PDLSSSEVARVL-MSFPDTDSSFSYFKSVAGNSNLVHTTETCNYMLEALRVDGKIEEMAY 141

Query: 135 AV-----RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189
                  R++K D      T+ +IF      G   +A  +   M   G   +  + N L+
Sbjct: 142 VFDLMQKRIIKRD----TNTYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLI 197

Query: 190 SAICRQENQTSRALEFLNRVKKIVD---PDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
             + +    T  A+E   R+  I+D   P   +++ L+ G  K  ++E       EM E 
Sbjct: 198 HLLLKSRFCT-EAMEVYRRM--ILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEM-ET 253

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P +V  +   +  L R  +++EA + L+ M  E C P +  ++  +D L       
Sbjct: 254 LGLKP-NVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLD 312

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            A +++  M       PD +TY  + +    N+ +  V +F+ EM K+   P  +     
Sbjct: 313 CAKEVFAKMKTGRHK-PDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTIL 371

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           +  L  A     A    + + + GILP   + N L+ GL  + RL D     + M
Sbjct: 372 VDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNM 426



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 115/288 (39%), Gaps = 4/288 (1%)

Query: 116  WNLMVDVLGKNGRFEQMWNAVRVMK-EDGVLSLPTFASIFDSYCGAGKYDEAV-MSFDVM 173
            +N ++D  GK+G+ ++++   + M   +   +  T   +      AG  D+A+ + +D+M
Sbjct: 825  YNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLM 884

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
            S             L+  + +          F         P+   + IL+ G+ K G  
Sbjct: 885  SDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEA 944

Query: 234  EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            + A   F  MV+  E     +  Y   +  L    +VDE L + R +K     P +  ++
Sbjct: 945  DAACALFKRMVK--EGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYN 1002

Query: 294  NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
              ++ L K +    A+ L++ M    G  PD  TYN +   L     V E  K ++E+ +
Sbjct: 1003 LIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQR 1062

Query: 354  NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
               +P        I     + +PE A  ++  ++  G  P   +  +L
Sbjct: 1063 AGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1110



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 141/338 (41%), Gaps = 12/338 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD-- 164
           G  L+ Y++N ++ +L K+    +     R M  DG   SL T++S+     G GK    
Sbjct: 185 GFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLM---VGLGKRRDI 241

Query: 165 EAVMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           E+VM     M   G++ +V      +  + R   + + A E L R+  +   PD  ++ +
Sbjct: 242 ESVMGLLKEMETLGLKPNVYTFTICIRVLGRA-GKINEAYEILKRMDDEGCGPDVVTYTV 300

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++       ++ A + F +M +     P+ V  Y T L      + +D   +F   M+ 
Sbjct: 301 LIDALCTARKLDCAKEVFAKM-KTGRHKPDRV-TYITLLDRFSDNRDLDSVNQFWSEMEK 358

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +   P +  F+  +D L K  +   A    D+M    G  P+  TYN +   L++  R+ 
Sbjct: 359 DGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRD-QGILPNLHTYNTLICGLLRVHRLD 417

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +  + F  M     +PT       I     + +   A+E +  +   GI P   + N  L
Sbjct: 418 DALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASL 477

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
             L   GR  + ++    + +  ++   VT + + K +
Sbjct: 478 YSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCY 515



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 131/307 (42%), Gaps = 28/307 (9%)

Query: 164  DEAVMSFDVMSMHGVEQDVVAVNSLLSAICR---QENQTSRALEFLNRVKK--IVDPDGD 218
            D AV   + +  +G+ +D    +S+L  I R   + N  S A     +  K   V P   
Sbjct: 732  DNAVSFSERLVANGICRDG---DSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLP 788

Query: 219  SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            ++ +L+ G  +   +E A   F + V+     P+ V  Y   L    +  ++DE  +  +
Sbjct: 789  TYNLLIGGLLEADMIEIAQDVFLQ-VKNTGCIPD-VATYNFLLDAYGKSGKIDELFEIYK 846

Query: 279  VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
             M    C P     +  +  LVK  +   A+ L+  +M      P + TY  + + L K+
Sbjct: 847  EMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKS 906

Query: 339  KRVHEVEKFFHEMIKNEWQPTPLNCA---TAITMLLDADEPEIAIEIWNYILENGILPLE 395
             R++E ++ F  M     +P   NCA     I     A E + A  ++  +++ G+ P  
Sbjct: 907  GRLYEAKQLFEGMSDYGCRP---NCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDL 963

Query: 396  ASANELLVGLRNLGRLSD----VRRFAEEMLNRRILIYEVTM------HKLKKA--FYNE 443
             + + L+  L  +GR+ +     R   E  LN  ++ Y + +      H+L++A   +NE
Sbjct: 964  KTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNE 1023

Query: 444  SRSMRDI 450
             +  R I
Sbjct: 1024 MKKSRGI 1030


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 162/341 (47%), Gaps = 18/341 (5%)

Query: 94  SPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM--KEDGVLSLPT- 149
           SP  A +FF WA R G      ++ +M+D+LG+NG      N +  +  + +G + +   
Sbjct: 39  SPPKAFEFFNWASRNGFAHDSRSYFMMLDILGRNGNLNIARNFLFSIERRSNGSVKIEDR 98

Query: 150 -FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
              ++  SY  AG ++EA+  F +M   GV   V+  NSLL  I  +  +T+ A    + 
Sbjct: 99  FCNTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLL-LILLKRGRTNMAHSVFDE 157

Query: 209 VKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           +     V PD  +F IL+ G+ K   V+E  + F EM  RF   P+ V+ Y T +  L R
Sbjct: 158 MCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEM-SRFNCEPD-VVTYNTLVDGLCR 215

Query: 267 GKQVDEALKFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
             +V  A   ++ M  K ++  P +  ++  +       +   A+ +++  MV  G  P+
Sbjct: 216 AGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFE-EMVSRGLKPN 274

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIW 383
            +TYN + + L + ++  ++++     +    + P      T +    DA   + A++++
Sbjct: 275 DITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMF 334

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             + E  + P  A+ + L   +RNL +  D  R AE++ ++
Sbjct: 335 KKMKELKVQPDSATYSVL---IRNLCQRGDFER-AEQLFDK 371



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 109/256 (42%), Gaps = 10/256 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEA--VMSF 170
           Y +N+++    KN   ++ +   + M   +    + T+ ++ D  C AGK   A  V+  
Sbjct: 169 YTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKG 228

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
            V  M  +  DVV   +L+   C ++      + F   V + + P+  ++  L++G  + 
Sbjct: 229 MVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEV 288

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
              ++  +  G  V    + P+    Y T +         DEALK  + MK     P   
Sbjct: 289 QKFDKIKEILGGAVGGRGFVPD-TCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSA 347

Query: 291 FFSNALDILVKLNDSTHAVQLWD------IMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
            +S  +  L +  D   A QL+D      I++   G  P    YN IF+ L KN + H+ 
Sbjct: 348 TYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKA 407

Query: 345 EKFFHEMIKNEWQPTP 360
           E+ F +++K   Q  P
Sbjct: 408 ERVFRQLMKKGTQDPP 423


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 131/296 (44%), Gaps = 5/296 (1%)

Query: 97  SAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
            AV   R    R  R +   +N ++D L K+    + ++    M   G+     T+ ++ 
Sbjct: 133 CAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLI 192

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
             +C  G+   A    D M +  +   V   N L++A+C++ N            K+ + 
Sbjct: 193 YGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIK 252

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P   +++ L++G+   G V+ A + F  MV+    NP +V +Y   +  L + K+VDEA+
Sbjct: 253 PGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQ-MGVNP-NVYSYNIMINGLCKCKRVDEAM 310

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
             LR M  +N  P    +++ +D L K    T A+ L + M    G   D +TY  + + 
Sbjct: 311 NLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMH-HRGQPADVVTYTSLLDA 369

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           L KN+ + +    F +M +   QPT       I  L      + A E++ ++L  G
Sbjct: 370 LCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKG 425



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 108/240 (45%), Gaps = 8/240 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVR-VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y++N+M++ L K  R ++  N +R ++ ++ V    T+ S+ D  C +G+   A+   + 
Sbjct: 291 YSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNE 350

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G   DVV   SLL A+C+ +N       F+   ++ + P   ++  L++G  K G 
Sbjct: 351 MHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGR 410

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++ A + F  ++   +     V  Y   +  L +    DEAL     M+   C P    F
Sbjct: 411 LKNAQELFQHLL--VKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTF 468

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
              +  L + +++  A +L    M+  G          +F   ++N+   + EK  HEMI
Sbjct: 469 EIIIRSLFEKDENDKAEKLLH-EMIAKGLLVLDFKVADVF---VQNEN-DKAEKLLHEMI 523



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 121/279 (43%), Gaps = 9/279 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T  ++    C  G+  +++   D +   G + D V+  +LL+ +C+   +T  A++ L  
Sbjct: 82  TLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKI-GETRCAVKLLRM 140

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++ +   P+   +  +++G  K+  V EA   + EM  R  + P+ +  Y T +      
Sbjct: 141 IEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIF-PDAI-TYTTLIYGFCLL 198

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            Q+  A   L  M  +N  P +  ++  ++ L K  +   A  L  +M    G  P  +T
Sbjct: 199 GQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVM-TKEGIKPGVVT 257

Query: 328 YNMIFE--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           Y+ + +  CL+    V   ++ FH M++    P   +    I  L      + A+ +   
Sbjct: 258 YSTLMDGYCLVG--EVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLRE 315

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           +L   ++P   + N L+ GL   GR++       EM +R
Sbjct: 316 MLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHR 354



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 137/341 (40%), Gaps = 45/341 (13%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           ++ ++ +  C  G+   AV    ++       +VV  N+++  +C+ +   + A +  + 
Sbjct: 117 SYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCK-DKLVNEAYDLYSE 175

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +  + + PD  ++  L+ G+   G +  A     EM+ +   NP  V  Y   +  L + 
Sbjct: 176 MDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILK-NINP-GVYIYNILINALCKE 233

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
             V EA   L VM  E   P +  +S  +D    + +  +A Q++   MV  G  P+  +
Sbjct: 234 GNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFH-AMVQMGVNPNVYS 292

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI-------------------- 367
           YN++   L K KRV E      EM+     P  +   + I                    
Sbjct: 293 YNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMH 352

Query: 368 -----------TMLLDA----DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                      T LLDA       + A  ++  + E GI P   +   L+ GL   GRL 
Sbjct: 353 HRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLK 412

Query: 413 DVRRFAEEMLNRRILI----YEVTMHKL-KKAFYNESRSMR 448
           + +   + +L +   I    Y V +  L K+  ++E+ +++
Sbjct: 413 NAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIK 453


>gi|297795031|ref|XP_002865400.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311235|gb|EFH41659.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 675

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 156/357 (43%), Gaps = 7/357 (1%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGK 125
           I++ L+  GI  + D+V +VL     S  + V FF WA R  G      ++ +++  LG+
Sbjct: 99  IQNCLSSLGIDLSIDIVSDVLNRGNLSGEAMVTFFNWAIREPGVSKDVDSYCVILRALGR 158

Query: 126 NGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
              F  M + +R M  +GV   L       DS+  A     A+  F+    +GV+    +
Sbjct: 159 RKFFSFMMDVLRGMVCEGVNPDLRCLTIAMDSFVRAHYVRRAIELFEESESYGVKCSTES 218

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
            N+LL  +C + +  S A    N  K  +  D  S+ I++ GW K G +E   K   EMV
Sbjct: 219 FNALLRCLC-ERSHVSAANSVFNAKKGKIPFDSCSYNIMISGWSKLGEIEGMEKVLKEMV 277

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           E   + P+  L+Y   +  L R  +++++++    MK +        ++  +   +   D
Sbjct: 278 EG-GFVPD-CLSYSHLIEGLGRAGRINDSVEIFDNMKHKGSVLDANVYNAMICNFISARD 335

Query: 305 STHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
              +++ +   M+     P+  TY+ +   LIK ++V +  + F EM+     PT     
Sbjct: 336 FDESMRYYR-RMLDEECEPNLETYSKLVSGLIKGRKVSDALEIFEEMLSRGILPTTGLVT 394

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           + +  L     P  A+ I+    + G    E++   LL  L   G+   +    +EM
Sbjct: 395 SFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEM 451


>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
 gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 142/326 (43%), Gaps = 11/326 (3%)

Query: 107 RGQRLSP---YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           RG+ + P     ++++++ L K G  +      R M   G    L  + ++ D  C + +
Sbjct: 315 RGKAMVPPNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNR 374

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN--RVKKIVDPDGDSF 220
             E+      M   G+E      N +   +CR+ +  S AL  L   R+   V     S 
Sbjct: 375 LQESCGLLQEMEESGIEPTSFTNNCIFGCLCRRHD-ISGALHLLKKMRIHGHVPWIKHST 433

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           +++ E   K G   EA K   +M E   + P+ ++AY   L  LI+ ++VD+ALK  + +
Sbjct: 434 SLVKE-LCKHGKEVEACKFLVDMAEE-GFQPD-IVAYSACLDGLIKIQEVDQALKLFQDI 490

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
             +   P +  ++  +  L K      A  L    M   G  P ++TYN + + L K   
Sbjct: 491 CAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLH-EMEEKGLVPSAVTYNTLIDGLCKTDH 549

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           + E   F   MI+ E +P  +  +T I  L +A  P+ A+ +WN +   G  P   +   
Sbjct: 550 LEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMA 609

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRI 426
            + GL N GR ++   +  EM  R +
Sbjct: 610 FIHGLSNCGRPNEALVYLREMEEREM 635



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 147/364 (40%), Gaps = 30/364 (8%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDS 156
           A+D F        +  Y ++++V    K G+ ++    +  M+E  V L+  TF S+   
Sbjct: 120 ALDVFNEIHDRGWVDEYVFSILVLAFSKWGKVDKACELIETMEEKNVRLNKKTFCSLIYG 179

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDP 215
           +    + D+A+  FD M   G   D+   + ++  +C  ++   +AL   + +K   + P
Sbjct: 180 FVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNKD-VKKALCLYSEMKGFKIQP 238

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEAL 274
           D      L+  + KE   EE    F EM E  + +P+   L Y + L +L+    V +A 
Sbjct: 239 DVKIVTKLISSFSKE---EELTCFFEEMHE--DMDPKASTLLYNSVLNSLVDNGSVHKAY 293

Query: 275 KFLRVMKGENCF----------------PTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
             L+ +   NC                 P    FS  ++ L+K  D   AV L+  M   
Sbjct: 294 HLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSIVINGLIKTGDLDLAVGLFRDMARI 353

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            G  PD L YN + + L  + R+ E      EM ++  +PT          L    +   
Sbjct: 354 -GCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEPTSFTNNCIFGCLCRRHDISG 412

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF----AEEMLNRRILIYEVTMH 434
           A+ +   +  +G +P    +  L+  L   G+  +  +F    AEE     I+ Y   + 
Sbjct: 413 ALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLD 472

Query: 435 KLKK 438
            L K
Sbjct: 473 GLIK 476



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 108/232 (46%), Gaps = 5/232 (2%)

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
           L R K +V P+  +F+I++ G  K G+++ A   F +M  R    P+ +L Y   +  L 
Sbjct: 313 LFRGKAMVPPNSTTFSIVINGLIKTGDLDLAVGLFRDMA-RIGCKPD-LLLYNNLIDGLC 370

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNAL-DILVKLNDSTHAVQLWDIMMVFHGAFPD 324
              ++ E+   L+ M+     PT  F +N +   L + +D + A+ L   M + HG  P 
Sbjct: 371 TSNRLQESCGLLQEMEESGIEPT-SFTNNCIFGCLCRRHDISGALHLLKKMRI-HGHVPW 428

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
                 + + L K+ +  E  KF  +M +  +QP  +  +  +  L+   E + A++++ 
Sbjct: 429 IKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQ 488

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
            I   G  P   + N L+ GL    R+++ +    EM  + ++   VT + L
Sbjct: 489 DICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTL 540


>gi|357454671|ref|XP_003597616.1| hypothetical protein MTR_2g100200 [Medicago truncatula]
 gi|124360397|gb|ABN08410.1| Pentatricopeptide repeat [Medicago truncatula]
 gi|355486664|gb|AES67867.1| hypothetical protein MTR_2g100200 [Medicago truncatula]
          Length = 527

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 153/322 (47%), Gaps = 17/322 (5%)

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY---AWNLMVDVLG 124
           IE AL+   I    D++ +VL        + V FF WA + Q + P    +++++V  LG
Sbjct: 89  IEQALSNVCIDVNVDIIGKVLNFGNLGGEAMVMFFNWALK-QPMVPRDVGSYHVIVKALG 147

Query: 125 KNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           +   F  M   +  M+ +G+ + L   + + DS+  AG   +A+  F  +   G+ +D  
Sbjct: 148 RRKFFVFMMQVLDEMRLNGIKADLLMLSIVIDSFVNAGHVSKAIQLFGNLDDLGLCRDTE 207

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
            +N LLS +CR+ +  + A  F N +K  V  + D++ +++ GW K G V E  K   EM
Sbjct: 208 VLNVLLSCLCRRCHVGAAASVF-NSMKGKVSFNVDTYNVVVGGWSKLGRVNEIEKVMKEM 266

Query: 244 -VERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
            VE F  +P+ + LA+  FL  L R  ++DEA++    MK ++       ++  +   + 
Sbjct: 267 EVEGF--SPDFNTLAF--FLEGLGRAGRMDEAVEVFGSMKEKDT----AIYNAMIFNFIS 318

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
           + D    ++ ++ M+      P+  TY+ +    ++ ++V +    F EM++    P   
Sbjct: 319 IGDFDGFMKYYNGMLS-DNCEPNIHTYSRMITAFLRTRKVADALLMFDEMLRQGVVPPTG 377

Query: 362 NCATAITMLLDADEPEIAIEIW 383
              + I  L     P  A+ I+
Sbjct: 378 TITSFIKQLCSYGPPYAAMMIY 399


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/389 (20%), Positives = 162/389 (41%), Gaps = 37/389 (9%)

Query: 93  DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151
           DS  +   +     RG       ++ ++  L K    ++    +  M ++GV+    T+ 
Sbjct: 216 DSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 275

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
           SI   YC +G+  EA+ +   M   GVE +VV  +SL++ +C+    T     F +  K+
Sbjct: 276 SILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH------------------ 253
            ++PD  ++  LL+G+  +G + E +     MV R    P+H                  
Sbjct: 336 GLEPDIATYRTLLQGYATKGALVEMHALLDLMV-RNGIQPDHHVFNILICAYAKQEKVDQ 394

Query: 254 ----------------VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
                           V+ Y T +  L +   VD+A+ +   M  E   P +  +++ + 
Sbjct: 395 AMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIH 454

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
            L   +    A +L  + M+  G   +++ +N I +   K  RV E EK F  M++   +
Sbjct: 455 GLCTCDKWDKAEELI-LEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVK 513

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
           P  +   T I     A + + A ++   ++  G+ P   +   L+ G   + R+ D    
Sbjct: 514 PDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALAL 573

Query: 418 AEEMLNRRILIYEVTMHKLKKAFYNESRS 446
            +EM++  +    +T + + +  ++  R+
Sbjct: 574 FKEMVSSGVSPNIITYNIILQGLFHTRRT 602



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 153/350 (43%), Gaps = 11/350 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLP---TFASIFDSYCGAGKYDEAVMS 169
           +++N ++  L    R ++    + +M +D G  S P   ++ ++ + +   G  D+A  +
Sbjct: 164 FSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYST 223

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWE 228
           +  M   G+  DVV  +S+++A+C+ +    +A+E LN  VK  V PD  ++  +L G+ 
Sbjct: 224 YHEMLDRGILPDVVTYSSIIAALCKAQ-AMDKAMEVLNTMVKNGVMPDCMTYNSILHGYC 282

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
             G  +EA  T  +M  R +    +V+ Y + +  L +  +  EA K    M      P 
Sbjct: 283 SSGQPKEAIGTLKKM--RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD 340

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  +   L              L D +MV +G  PD   +N++     K ++V +    F
Sbjct: 341 IATYRTLLQGYATKGALVEMHALLD-LMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVF 399

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            +M ++   P  +   T I +L  +   + A+  +  +++ G+ P       L+ GL   
Sbjct: 400 SKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTC 459

Query: 409 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD--IFDSLER 456
            +         EML+R I +  +  + +  +   E R +    +FD + R
Sbjct: 460 DKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVR 509



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 134/306 (43%), Gaps = 19/306 (6%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDS 219
           ++A   FD +   G    +  +N  L+ + R     + A+   NR+ +     V P   +
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVARH--SPAAAVSRYNRMARAGAGKVTPTVHT 94

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKF-L 277
           +AIL+    + G ++      G +V++ F  +    + +   L  L   K+  +A+   L
Sbjct: 95  YAILIGCCCRAGRLDLGFAALGNVVKKGFRVD---AITFTPLLKGLCADKRTSDAMDIVL 151

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF--PDSLTYNMIFECL 335
           R M    C P +  ++N L  L   N S  A++L  +M    G    PD ++YN +    
Sbjct: 152 RRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGF 211

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
            K     +    +HEM+     P  +  ++ I  L  A   + A+E+ N +++NG++P  
Sbjct: 212 FKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDC 271

Query: 396 ASANELLVGLRNLGR----LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIF 451
            + N +L G  + G+    +  +++   + +   ++ Y   M+ L K     S   R IF
Sbjct: 272 MTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKN--GRSTEARKIF 329

Query: 452 DSLERR 457
           DS+ +R
Sbjct: 330 DSMTKR 335



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 5/284 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ T+A +    C AG+ D    +   +   G   D +    LL  +C  + +TS A++ 
Sbjct: 91  TVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLC-ADKRTSDAMDI 149

Query: 206 -LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLI 262
            L R+ ++   PD  S+  LL+G   E   +EA +    M  +R   +P  V++Y T L 
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
              +    D+A      M      P +  +S+ +  L K      A+++ +  MV +G  
Sbjct: 210 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNT-MVKNGVM 268

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           PD +TYN I      + +  E      +M  +  +P  +  ++ +  L        A +I
Sbjct: 269 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKI 328

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           ++ + + G+ P  A+   LL G    G L ++    + M+   I
Sbjct: 329 FDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI 372



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 105/253 (41%), Gaps = 12/253 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG  L+   +N ++D   K GR  +      +M   GV   + T+ ++ D  C AGK DE
Sbjct: 475 RGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDE 534

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A      M   GV+ D+V   +L++  CR          F   V   V P+  ++ I+L+
Sbjct: 535 ATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQ 594

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G         A + +  + +        +  Y   L  L +    DEAL+  + +    C
Sbjct: 595 GLFHTRRTAAAKELYVSITK--SGTQLELSTYNIILHGLCKNNLTDEALRMFQNL----C 648

Query: 286 FPTLKFFSNALDI----LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
              L+  +   +I    L+K      A  L+      +G  PD  TY+++ E LI+   +
Sbjct: 649 LTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSA-NGLVPDVRTYSLMAENLIEQGSL 707

Query: 342 HEVEKFFHEMIKN 354
            E++  F  M +N
Sbjct: 708 EELDDLFLSMEEN 720



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 3/209 (1%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F SI DS+C  G+  E+   FD+M   GV+ D++  N+L+   C             + V
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMV 543

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
              V PD  ++  L+ G+ +   +++A   F EMV        +++ Y   L  L   ++
Sbjct: 544 SVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVS--SGVSPNIITYNIILQGLFHTRR 601

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
              A +    +        L  ++  L  L K N +  A++++  + +      ++ T+N
Sbjct: 602 TAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL-ETRTFN 660

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
           ++   L+K  R+ E +  F     N   P
Sbjct: 661 IMIGALLKCGRMDEAKDLFAAHSANGLVP 689


>gi|255660966|gb|ACU25652.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 376

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 165/364 (45%), Gaps = 20/364 (5%)

Query: 80  TPD-LVHEVLQLSYDSPSSAVDFFR-W---AGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           +PD +V+  +   Y   +   D F  W      G R S  ++N+M+  L  NG+ +++ +
Sbjct: 22  SPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNGKVDEVIS 80

Query: 135 AVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
              +MKE G V    T+  +   +C  G  D+++   ++    G   D  A +++++ +C
Sbjct: 81  IWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLC 140

Query: 194 RQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           ++ N   RAL  LN  +K    P+   +  L+ G       E+A + F EM      +P 
Sbjct: 141 KEAN-LDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREM-GTMHCSPT 198

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            ++ Y T +  L + +   EA   ++ +  +   P +  +S  +  L   +    A+QLW
Sbjct: 199 -IITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLW 257

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML-- 370
           +  ++  G  PD   +N++   L    ++      + +M  N W+  P N  +  T++  
Sbjct: 258 N-QVISKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDM--NRWKCAP-NLVSHNTLMEG 313

Query: 371 --LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 428
              D D    A+ IW  IL NG+ P   S N  L GL +  R+SD   F  + + ++I+ 
Sbjct: 314 FYKDGDIRN-ALMIWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVP 372

Query: 429 YEVT 432
            ++T
Sbjct: 373 TKIT 376



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/338 (19%), Positives = 133/338 (39%), Gaps = 40/338 (11%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
            ++SP A  +N M++   +  + +  +    +M  +G  S+ +F  +       GK DE 
Sbjct: 19  SKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVSSFNIMMRGLFDNGKVDEV 78

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +  +++M   G  +D +    L+   C+      ++L                   +LE 
Sbjct: 79  ISIWELMKESGFVEDSITYGILVHGFCKN-GYIDKSLH------------------VLEM 119

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
            E++G V +A                   AY   +  L +   +D AL  L  M    C 
Sbjct: 120 AEQKGGVLDA------------------FAYSAMINGLCKEANLDRALSVLNGMIKSGCK 161

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P +  ++  ++ L   +    A++++  M   H + P  +TYN +   L KN+   E   
Sbjct: 162 PNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCS-PTIITYNTLINGLCKNEMFGEAYN 220

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
              E++     P  +  +  +  L    + E A+++WN ++  G  P     N L+ GL 
Sbjct: 221 LVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLC 280

Query: 407 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           ++G++        +M   +     V+ + L + FY + 
Sbjct: 281 SVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDG 318


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 146/325 (44%), Gaps = 22/325 (6%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP------TFASIFDSYCGA 160
           +G  L+   +N ++    KNG   Q  NA R++KE  +LS+       +F S+    C  
Sbjct: 407 KGLSLTSSTYNTLIKGYCKNG---QADNAERLLKE--MLSIGFNVNQGSFTSVICLLCSH 461

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE----FLNRVKKIVDPD 216
             +D A+     M +  +      + +L+S +C+   + S+ALE    FLN+   +VD  
Sbjct: 462 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKH-GKHSKALELWFQFLNK-GFVVDTR 519

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +   LL G  + G ++EA +   E++ R        ++Y T +      K++DEA  F
Sbjct: 520 TSN--ALLHGLCEAGKLDEAFRIQKEILGR--GCVMDRVSYNTLISGCCGKKKLDEAFMF 575

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
           L  M      P    +S  +  L  +N    A+Q WD     +G  PD  TY+++ +   
Sbjct: 576 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKR-NGMLPDVYTYSVMIDGCC 634

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           K +R  E ++FF EM+    QP  +     I     +    +A+E+   +   GI P  A
Sbjct: 635 KAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSA 694

Query: 397 SANELLVGLRNLGRLSDVRRFAEEM 421
           +   L+ G+  + R+ + +   EEM
Sbjct: 695 TYTSLIKGMSIISRVEEAKLLFEEM 719



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 164/367 (44%), Gaps = 24/367 (6%)

Query: 82  DLVHEVL--QLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           DL+ EV   Q   D    A+D F   A +G   S    N+++  L +   F++   A  V
Sbjct: 205 DLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDV 264

Query: 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI--CRQE 196
           + +     +  F +  +++C  GK +EAV  F  M   GV  +VV  N+++  +  C + 
Sbjct: 265 VCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRY 324

Query: 197 NQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           ++   A  F  + V++ ++P   +++IL++G  +   + +A     EM ++    P +V+
Sbjct: 325 DE---AFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKK--GFPPNVI 379

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y   + + I    +++A++   +M  +    T   ++  +    K   + +A +L   M
Sbjct: 380 VYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM 439

Query: 316 M-----VFHGAFPDSLTYNMIFECLIKNKRVHEVE-KFFHEMIKNEWQPTPLNCATAITM 369
           +     V  G+F   +       CL+ +  + +   +F  EM+     P      T I+ 
Sbjct: 440 LSIGFNVNQGSFTSVI-------CLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISG 492

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
           L    +   A+E+W   L  G +    ++N LL GL   G+L +  R  +E+L R  ++ 
Sbjct: 493 LCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMD 552

Query: 430 EVTMHKL 436
            V+ + L
Sbjct: 553 RVSYNTL 559



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 89/452 (19%), Positives = 171/452 (37%), Gaps = 76/452 (16%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLG 124
           D+   LA  G+ P+    + +L   +  +      + F    +G     Y +   ++   
Sbjct: 225 DVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFC 284

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K G+ E+       M+E GV  ++ TF ++ D     G+YDEA M  + M   G+E  ++
Sbjct: 285 KGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLI 344

Query: 184 AVNSLLSAICR----------------------------------QENQTSRALEFLN-R 208
             + L+  + R                                  +    ++A+E  +  
Sbjct: 345 TYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLM 404

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRG 267
           V K +     ++  L++G+ K G  + A +   EM+   F  N     ++ + +  L   
Sbjct: 405 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQG---SFTSVICLLCSH 461

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM----------- 316
              D AL+F+  M   N  P     +  +  L K    + A++LW   +           
Sbjct: 462 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTS 521

Query: 317 --VFHG---------AFP------------DSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             + HG         AF             D ++YN +       K++ E   F  EM+K
Sbjct: 522 NALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVK 581

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
              +P     +  I  L + ++ E AI+ W+    NG+LP   + + ++ G     R  +
Sbjct: 582 RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEE 641

Query: 414 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            + F +EM+++ +    V  + L +A+    R
Sbjct: 642 GQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGR 673



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 108/236 (45%), Gaps = 7/236 (2%)

Query: 124 GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           GK+ +  ++W   + + +  V+   T  ++    C AGK DEA      +   G   D V
Sbjct: 497 GKHSKALELW--FQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRV 554

Query: 184 AVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
           + N+L+S  C ++ +   A  FL+  VK+ + PD  +++IL+ G      VEEA + F +
Sbjct: 555 SYNTLISGCCGKK-KLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQ-FWD 612

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
             +R    P+ V  Y   +    + ++ +E  +F   M  +N  P    +++ +    + 
Sbjct: 613 DCKRNGMLPD-VYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRS 671

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
              + A++L + M    G  P+S TY  + + +    RV E +  F EM     +P
Sbjct: 672 GRLSMALELREDMK-HKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP 726


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 148/351 (42%), Gaps = 6/351 (1%)

Query: 97  SAVDFFRW-AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFD 155
           +A+  FR+ A +G   +      ++  L K    E+ +     M++     +  F++  +
Sbjct: 262 NAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAIN 321

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVD 214
           ++C  GK ++A+  F  M   GV  +VV  N+L+  +C+  N    A  F  + VK  V+
Sbjct: 322 AFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGN-LDEAFRFKEKMVKDGVN 380

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
               ++++L+ G  K     EAN    E +E+  + P  V+ Y T +    +   + +AL
Sbjct: 381 ATLITYSVLINGLMKLEKFNEANSVLKETLEK-GFTPNEVV-YNTLIDGYCKMGNLGDAL 438

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           +    M  +   P     ++ +    K+     A  + + M+   G   +   +  I   
Sbjct: 439 RIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLS-RGFSINPGAFTTIIHW 497

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L  N R     +F  EM+    +P      T +  L    +   A+E+W  +LE G    
Sbjct: 498 LCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGAN 557

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             + N L+ GL   G + +  R  ++ML R  ++ ++T + L      E +
Sbjct: 558 LVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGK 608



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 138/329 (41%), Gaps = 9/329 (2%)

Query: 96  SSAVDF-FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASI 153
           S AV+  FR   +G   +    N ++  L K G  ++    ++ M E G VL   T+ ++
Sbjct: 540 SDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTL 599

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KI 212
               C  GK +E       M   G+E D    N L+  +CR   +   A+   N  K + 
Sbjct: 600 ISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRI-GKLDEAVNLWNECKSRD 658

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVD 271
           + P+  ++ ++++G+ K   +EE  K F E++ +  E N    + Y T +    R     
Sbjct: 659 LVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNS---VVYNTLIRAYCRNGNTV 715

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           EA K    M+ +   PT   +S+ +  +  +     A  L D M    G  P+ + Y  +
Sbjct: 716 EAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRK-EGLLPNVVCYTAL 774

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
                K  ++ +V     EM   +  P  +     I     + + + A ++ + ++  GI
Sbjct: 775 IGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGI 834

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEE 420
           +P   + N L  G    G++ + +  AE+
Sbjct: 835 VPDTVTYNVLTNGFCKEGKIEEGKLLAED 863



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 138/324 (42%), Gaps = 20/324 (6%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE---------DGVLSLPTFASIFDSY 157
           RG  ++P A+  ++  L  N RFE   +A+R ++E         DG+L+     ++    
Sbjct: 482 RGFSINPGAFTTIIHWLCMNSRFE---SALRFLREMLLRNMRPNDGLLT-----TLVGGL 533

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
           C  GK+ +AV  +  +   G   ++V  N+L+  +C+  N           +++    D 
Sbjct: 534 CKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDK 593

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++  L+ G  KEG VEE  K  GEMV++    P+    Y   +  + R  ++DEA+   
Sbjct: 594 ITYNTLISGCCKEGKVEEGFKLRGEMVKQ-GIEPD-TFTYNLLIHGMCRIGKLDEAVNLW 651

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
              K  +  P +  +   +D   K +      +L+  ++  +    +S+ YN +     +
Sbjct: 652 NECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLEL-NSVVYNTLIRAYCR 710

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
           N    E  K   +M      PT    ++ I  + +    E A  + + + + G+LP    
Sbjct: 711 NGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVC 770

Query: 398 ANELLVGLRNLGRLSDVRRFAEEM 421
              L+ G   LG++  V    +EM
Sbjct: 771 YTALIGGYCKLGQMDKVVNVLQEM 794



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 78/376 (20%), Positives = 147/376 (39%), Gaps = 39/376 (10%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           FF     G   +   +N ++  L K+G  ++ +     M +DGV  +L T++ + +    
Sbjct: 336 FFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMK 395

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             K++EA          G   + V  N+L+   C+  N         + V K ++P+  +
Sbjct: 396 LEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVT 455

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
              +++G+ K G +E+A     EM+ R F  NP    A+ T +  L    + + AL+FLR
Sbjct: 456 LNSIIQGFCKIGQMEQAECILEEMLSRGFSINPG---AFTTIIHWLCMNSRFESALRFLR 512

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM----------------------- 315
            M   N  P     +  +  L K    + AV+LW  +                       
Sbjct: 513 EMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTG 572

Query: 316 -----------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
                      M+  G   D +TYN +     K  +V E  K   EM+K   +P      
Sbjct: 573 NMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYN 632

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             I  +    + + A+ +WN      ++P   +   ++ G     ++ +  +   E+L +
Sbjct: 633 LLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQ 692

Query: 425 RILIYEVTMHKLKKAF 440
            + +  V  + L +A+
Sbjct: 693 NLELNSVVYNTLIRAY 708



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 81/212 (38%), Gaps = 35/212 (16%)

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLK-------------------------------- 290
           T  R      A+   R +  +  FPT+K                                
Sbjct: 253 TQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPD 312

Query: 291 --FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
              FS A++   K      A+QL+  M    G  P+ +TYN +   L K+  + E  +F 
Sbjct: 313 VYLFSTAINAFCKGGKVEDAIQLFFDMEKL-GVSPNVVTYNNLIHGLCKHGNLDEAFRFK 371

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            +M+K+    T +  +  I  L+  ++   A  +    LE G  P E   N L+ G   +
Sbjct: 372 EKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKM 431

Query: 409 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           G L D  R   +M+++ I    VT++ + + F
Sbjct: 432 GNLGDALRIRGDMVSKGINPNSVTLNSIIQGF 463


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/333 (19%), Positives = 155/333 (46%), Gaps = 7/333 (2%)

Query: 83  LVHEVLQLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           L+H + +  ++  S AV    R   +G +     + ++V+ L K G  +   + ++ M++
Sbjct: 192 LIHGLFR--HNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQ 249

Query: 142 DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
             +   +  + +I D+ C     ++A+  F  M   G+  +VV  NSL+  +C     + 
Sbjct: 250 GKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSD 309

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
            +    + +++ ++P+  +F+ L++ + KEG + EA K + EM++R   +P+ +  Y + 
Sbjct: 310 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR-SIDPD-IFTYSSL 367

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +       ++DEA     +M  ++CFP +  ++  +    K       ++L+   M   G
Sbjct: 368 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR-EMSQRG 426

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
              +++TY  +     + +     +  F +M+ +   P  +  +  +  L +  + E A+
Sbjct: 427 LVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETAL 486

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSD 413
            ++ Y+  + + P   + N ++ G+   G++ D
Sbjct: 487 VVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVED 519



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 145/329 (44%), Gaps = 6/329 (1%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++  + K  +F+ + +    M+  G+  +L T++ + + +C   +   A+     M   G
Sbjct: 87  LLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLG 146

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEA 236
            E D+V +NSLL+  C   N+ S A+  + ++ ++   PD  +F  L+ G  +     EA
Sbjct: 147 YEPDIVTLNSLLNGFC-HGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEA 205

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
                 MV +    P+ ++ Y   +  L +   +D AL  L+ M+     P +  ++  +
Sbjct: 206 VALVDRMVVK-GCQPD-LVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTII 263

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
           D L    +   A+ L+   M   G  P+ +TYN +  CL    R  +  +   +MI+ + 
Sbjct: 264 DALCNYKNVNDALNLF-TEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 322

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
            P  +  +  I   +   +   A ++++ +++  I P   + + L+ G     RL + + 
Sbjct: 323 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 382

Query: 417 FAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             E M+++      VT + L K F    R
Sbjct: 383 MFELMISKDCFPNVVTYNTLIKGFCKAKR 411



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 129/315 (40%), Gaps = 42/315 (13%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F+ +  +     K+D  +   + M   G+  ++   + L++  CR+ +Q S AL  
Sbjct: 80  SIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRR-SQLSLALAV 138

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  +   LL G+     + +A    G+MVE   + P+      TF  TL
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVE-MGYQPDSF----TF-NTL 192

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
           I G                               L + N ++ AV L D  MV  G  PD
Sbjct: 193 IHG-------------------------------LFRHNRASEAVALVD-RMVVKGCQPD 220

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TY ++   L K   +        +M + + +P  +   T I  L +      A+ ++ 
Sbjct: 221 LVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFT 280

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            +   GI P   + N L+  L N GR SD  R   +M+ R+I    VT   L  AF  E 
Sbjct: 281 EMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEG 340

Query: 445 R--SMRDIFDSLERR 457
           +      ++D + +R
Sbjct: 341 KLVEAEKLYDEMIKR 355



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 134/314 (42%), Gaps = 5/314 (1%)

Query: 91  SYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLP 148
           +Y + + A++ F     +G R +   +N ++  L   GR+      +  M E  +  ++ 
Sbjct: 268 NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV 327

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+++ D++   GK  EA   +D M    ++ D+   +SL++  C  +        F   
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 387

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K   P+  ++  L++G+ K   V+E  + F EM +R      + + Y T +    + +
Sbjct: 388 ISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVG--NTVTYTTLIHGFFQAR 445

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           + D A    + M  +   P +  +S  LD L        A+ +++ +       PD  TY
Sbjct: 446 ECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQR-SKMEPDIYTY 504

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N++ E + K  +V +    F  +     +P  +   T ++        E A  ++  + E
Sbjct: 505 NIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKE 564

Query: 389 NGILPLEASANELL 402
            G LP   + N L+
Sbjct: 565 EGPLPDSGTYNTLI 578



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/329 (20%), Positives = 129/329 (39%), Gaps = 41/329 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y ++++++   +  +       + ++MK      + T  S+ + +C   +  +AV     
Sbjct: 117 YTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQ 176

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G + D    N+L+  + R  N+ S A+  ++R V K   PD  ++ I++ G  K G
Sbjct: 177 MVEMGYQPDSFTFNTLIHGLFRH-NRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRG 235

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN------- 284
           +++ A     +M E+ +  P  V+ Y T +  L   K V++AL     M  +        
Sbjct: 236 DIDLALSLLKKM-EQGKIEP-GVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 293

Query: 285 ------CF----------------------PTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
                 C                       P +  FS  +D  VK      A +L+D  M
Sbjct: 294 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD-EM 352

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
           +     PD  TY+ +      + R+ E +  F  MI  +  P  +   T I     A   
Sbjct: 353 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRV 412

Query: 377 EIAIEIWNYILENGILPLEASANELLVGL 405
           +  +E++  + + G++    +   L+ G 
Sbjct: 413 DEGMELFREMSQRGLVGNTVTYTTLIHGF 441



 Score = 39.3 bits (90), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 32/166 (19%), Positives = 67/166 (40%), Gaps = 1/166 (0%)

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           Y    I  +   ++D+A+     M     FP++  FS  L  + K+N     + L + M 
Sbjct: 49  YRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQ 108

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
              G   +  TY+++  C  +  ++        +M+K  ++P  +   + +      +  
Sbjct: 109 NL-GISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRI 167

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
             A+ +   ++E G  P   + N L+ GL    R S+     + M+
Sbjct: 168 SDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMV 213



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 31/162 (19%), Positives = 72/162 (44%), Gaps = 2/162 (1%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+H   Q + +  ++ + F +    G       +++++D L  NG+ E        ++  
Sbjct: 437 LIHGFFQ-ARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRS 495

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
            +   + T+  + +  C AGK ++    F  +S+ GV+ +VV   +++S  CR+  +   
Sbjct: 496 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEA 555

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
              F    ++   PD  ++  L+    ++G+   + +   EM
Sbjct: 556 DALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 597


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/388 (21%), Positives = 161/388 (41%), Gaps = 70/388 (18%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L +NG FE++   +  M E G    +  +A+I D  C  G    A    + M 
Sbjct: 265 FNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMP 324

Query: 175 MHGVEQDVVAVNSLLSAICRQEN--QTSRALE-------------------------FLN 207
            +G++ +VV  N+LL  +C  E   +T   L                           ++
Sbjct: 325 SYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVD 384

Query: 208 RVKKIVD--------PDGDSFAILLEGWEKEGNVEEANKTFGEMV--------------- 244
           RV ++++        PD  ++  ++ G+ KEG ++EA      M                
Sbjct: 385 RVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVL 444

Query: 245 ------ERF------------EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
                 ER+            +  P + + + T +  L +   V++A++ L+ M    C 
Sbjct: 445 KGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCS 504

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P L  +S  +D L K   +  A++L ++ MV  G  P+++ Y+ I   L +  R+++V +
Sbjct: 505 PDLISYSTVIDGLGKAGKTDEALELLNV-MVNKGMSPNTIIYSSIASALSREGRINKVIQ 563

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            F  +     +   +     I+ L    E E AIE   Y++ +G +P E++   L+ GL 
Sbjct: 564 MFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLA 623

Query: 407 NLGRLSDVRRFAEEMLNRRILIYEVTMH 434
           + G + + +    E+ ++  L   +  H
Sbjct: 624 SEGFVKEAQEMLTELCSKGALRKHLMKH 651



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 38/177 (21%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G  L+P  +N +++ L K G  EQ    ++ M  +G    L +++++ D    AGK DE
Sbjct: 466 QGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDE 525

Query: 166 AVMSFDVMSMHG-----------------------------------VEQDVVAVNSLLS 190
           A+   +VM   G                                   +  D V  N+++S
Sbjct: 526 ALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVIS 585

Query: 191 AICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           ++C++  +T RA+EFL   V     P+  ++ IL+ G   EG V+EA +   E+  +
Sbjct: 586 SLCKR-GETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSK 641



 Score = 42.4 bits (98), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 92/239 (38%), Gaps = 10/239 (4%)

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           N++++  CR   Q   A      V   V P+  ++  ++      G + +A     EM  
Sbjct: 94  NAMVAGYCRA-GQLESARRLAAAVP--VPPNAYTYFPVVRALCARGRIADALAVLDEMPR 150

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
           R    P   + Y   L    RG     A++ L  +    C   +   +  L+ +      
Sbjct: 151 R-GCAPIPPM-YHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSV 208

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
             A+ L   +  F G  PD ++YN + + L   KR   V++   EM++    P  +   T
Sbjct: 209 DKALHLLRDLPSF-GCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNT 267

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            I+ L      E   E+   + E+G  P       ++ G+   G L    + A E+LNR
Sbjct: 268 LISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHL----KVAHEILNR 322


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 135/313 (43%), Gaps = 39/313 (12%)

Query: 150 FASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           + ++   Y  +G+++EA  + ++ M + G E D    N ++  + ++    S ALE LN 
Sbjct: 344 YNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVS-ALELLNE 402

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            V K  +P+  ++ IL+ G+ K+G +EEA +    M  +      + + Y   +  L + 
Sbjct: 403 MVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAK--GLSLNTVGYNCLICALCKD 460

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM------------ 315
             ++EAL+    M G+ C P +  F++ ++ L K +    A+ L+  M            
Sbjct: 461 GNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTY 520

Query: 316 ----------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
                                 M+F G   D++TYN + + L K   V +    F EM+ 
Sbjct: 521 NTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLG 580

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               PT ++C   I+ L    +   A++    ++  G+ P   + N L+ GL  +G + +
Sbjct: 581 KGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQE 640

Query: 414 VRRFAEEMLNRRI 426
                 ++ +  I
Sbjct: 641 ASNLFNKLQSEGI 653



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 152/380 (40%), Gaps = 80/380 (21%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +    C AG+  EA    D M + G   D +    L+  +CR   Q   A   LN+
Sbjct: 277 TFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRM-GQVDEARALLNK 335

Query: 209 V------------------------KKIV---------DPDGDSFAILLEGWEKEGNVEE 235
           +                        K ++         +PD  +F I+++G  K+G +  
Sbjct: 336 IPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVS 395

Query: 236 ANKTFGEMV-ERFEWN--------------------------------PEHVLAYETFLI 262
           A +   EMV +RFE N                                  + + Y   + 
Sbjct: 396 ALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLIC 455

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
            L +   ++EAL+    M G+ C P +  F++ ++ L K +    A+ L+  M +  G  
Sbjct: 456 ALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFL-EGVI 514

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT---AITMLLDADEPEIA 379
            +++TYN +    +    + +  K   EM+   ++  PL+  T    I  L      E  
Sbjct: 515 ANTVTYNTLVHAFLMRDSIQQAFKLVDEML---FRGCPLDNITYNGLIKALCKTGAVEKG 571

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHK 435
           + ++  +L  GI P   S N L+ GL   G+++D  +F ++M++R     I+ Y   ++ 
Sbjct: 572 LGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLING 631

Query: 436 LKKAFYNESRSMRDIFDSLE 455
           L K  + +  S  ++F+ L+
Sbjct: 632 LCKMGHVQEAS--NLFNKLQ 649



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 114/267 (42%), Gaps = 14/267 (5%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYD 164
           +R  P    + ++++   K GR E+    V  M   G LSL T  +  +  + C  G  +
Sbjct: 406 KRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKG-LSLNTVGYNCLICALCKDGNIE 464

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA+  F  MS  G + D+   NSL++ +C+          + +   + V  +  ++  L+
Sbjct: 465 EALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLV 524

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
             +    ++++A K   EM+  F   P   + Y   +  L +   V++ L     M G+ 
Sbjct: 525 HAFLMRDSIQQAFKLVDEML--FRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKG 582

Query: 285 CFPTL---KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            FPT+       + L    K+ND+   +Q     M+  G  PD +TYN +   L K   V
Sbjct: 583 IFPTIISCNILISGLCRTGKVNDALKFLQ----DMIHRGLTPDIVTYNSLINGLCKMGHV 638

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAIT 368
            E    F+++     +P  +   T I+
Sbjct: 639 QEASNLFNKLQSEGIRPDAITYNTLIS 665



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 124/309 (40%), Gaps = 9/309 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N+++D+L          N    M   GV  ++ TF  +  + C   + D A      M
Sbjct: 172 SYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDM 231

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGWEKEGN 232
           + HG   + V   +L+ A+C + N+ S AL+ L +      +PD  +F  ++ G  + G 
Sbjct: 232 AKHGCVPNSVIYQTLIHALC-ENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGR 290

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + EA K    M+ R        L Y   +  L R  QVDEA   L  +      P    +
Sbjct: 291 IHEAAKLLDRMLLR--GFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN----PNTVLY 344

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +   V       A  L    MV  G  PD+ T+N++ + L+K   +    +  +EM+
Sbjct: 345 NTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMV 404

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
              ++P  +     I         E A EI N +   G+       N L+  L   G + 
Sbjct: 405 AKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIE 464

Query: 413 DVRRFAEEM 421
           +  +   EM
Sbjct: 465 EALQLFGEM 473



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 162/371 (43%), Gaps = 13/371 (3%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           +P  + ++L+L  D P+S ++ F+ AG  +G   +  A  L++D LG  G F+ +   ++
Sbjct: 65  SPFQLCKLLELPLDIPTS-MELFQRAGAQKGYSHTFDACYLLIDKLGAVGDFKVIEKLLK 123

Query: 138 VMKEDGVLSLPT-FASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
            MK++G+L   + F  I   Y  AG   +A  +  D+  ++  +    + N +L  +   
Sbjct: 124 QMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLDILVDG 183

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           +        F + + + V P   +F ++++       V+ A     +M  +    P  V+
Sbjct: 184 DCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMA-KHGCVPNSVI 242

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y+T +  L    +V EAL+ L  M    C P ++ F++ +  L +      A +L D  
Sbjct: 243 -YQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLD-R 300

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           M+  G   D+LTY  +   L +  +V E     +++      P  +   T I+  + +  
Sbjct: 301 MLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKI----PNPNTVLYNTLISGYVASGR 356

Query: 376 PEIAIE-IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
            E A + ++N ++  G  P   + N ++ GL   G L        EM+ +R     +T  
Sbjct: 357 FEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYT 416

Query: 435 KLKKAFYNESR 445
            L   F  + R
Sbjct: 417 ILINGFCKQGR 427



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 103/243 (42%), Gaps = 14/243 (5%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCG 159
           F   +G+G +   Y +N +++ L KN + E+  +    M  +GV++   T+ ++  ++  
Sbjct: 470 FGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLM 529

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
                +A    D M   G   D +  N L+ A+C+          F   + K + P   S
Sbjct: 530 RDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIIS 589

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
             IL+ G  + G V +A K   +M+ R    P+ ++ Y + +  L +   V EA      
Sbjct: 590 CNILISGLCRTGKVNDALKFLQDMIHR-GLTPD-IVTYNSLINGLCKMGHVQEASNLFNK 647

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH-----GAFPDSLTYNMIFEC 334
           ++ E   P      +A+     ++   H     D  ++ +     G  P+ +T++++   
Sbjct: 648 LQSEGIRP------DAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINY 701

Query: 335 LIK 337
           ++K
Sbjct: 702 IVK 704


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 141/314 (44%), Gaps = 14/314 (4%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFD 171
            A+N M+ +L   G++E++      M  +G    P   T++++  ++C  G+ D A+   +
Sbjct: 1186 AYNSMIIMLMHEGQYEKVHQLYNEMSTEG-HCFPDTVTYSALISAFCKLGRRDSAIQLLN 1244

Query: 172  VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKE 230
             M   G+ Q    + ++L A+  + N    AL     ++ +   PD  ++  L+ G  K 
Sbjct: 1245 EMKEIGM-QPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKA 1303

Query: 231  GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            G ++EA   F EM +R    P+ V      +  L +  ++D+A+K  + M+   C P++ 
Sbjct: 1304 GRIDEAYHFFCEM-QREGCRPDTVF-MNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVV 1361

Query: 291  FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
             ++  +  L +       V  W   M   G  P S TY+++ +   K  R+ +      E
Sbjct: 1362 TYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEE 1421

Query: 351  MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL-- 408
            M +  + P P    + I  L  A   ++A E++  + EN      +SA    V +++L  
Sbjct: 1422 MDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCG---SSSARVYAVMIKHLGK 1478

Query: 409  -GRLSDVRRFAEEM 421
             GRL D     +EM
Sbjct: 1479 AGRLDDAINMFDEM 1492



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 139/311 (44%), Gaps = 7/311 (2%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKYDEAVMSFDV 172
            + +  ++  LGK GR ++ ++    M+ +G      F +   ++ G AG+ D+A+  F  
Sbjct: 1291 FTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQE 1350

Query: 173  MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
            M        VV  N+++ A+   +++ S    +  R+K+  + P   +++IL++G+ K  
Sbjct: 1351 METLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTN 1410

Query: 232  NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LK 290
             +E+A     EM E+    P    AY + +  L + K+ D A +  + +K ENC  +  +
Sbjct: 1411 RMEKAMMLLEEMDEK--GFPPCPAAYCSLIDALGKAKRYDLACELFQELK-ENCGSSSAR 1467

Query: 291  FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
             ++  +  L K      A+ ++D M    G  PD   YN +   L +   + E       
Sbjct: 1468 VYAVMIKHLGKAGRLDDAINMFDEMNKL-GCAPDVYAYNALMSGLARTGMLDEALSTMRR 1526

Query: 351  MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
            M ++   P   +    +  L     P  A+E+ + + ++ + P   S N +L  L + G 
Sbjct: 1527 MQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGM 1586

Query: 411  LSDVRRFAEEM 421
              +  +  +EM
Sbjct: 1587 FEEASKLMKEM 1597



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 5/193 (2%)

Query: 113  PYAWNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
            P A+  ++D LGK  R++      + +KE+ G  S   +A +      AG+ D+A+  FD
Sbjct: 1431 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFD 1490

Query: 172  VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKE 230
             M+  G   DV A N+L+S + R       AL  + R+++    PD +S+ I+L G  K 
Sbjct: 1491 EMNKLGCAPDVYAYNALMSGLART-GMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKT 1549

Query: 231  GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            G    A +    M ++    P+ V++Y T L  L      +EA K ++ M        L 
Sbjct: 1550 GGPHRAMEMLSNM-KQSTVRPD-VVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLI 1607

Query: 291  FFSNALDILVKLN 303
             +S+ L+ + K++
Sbjct: 1608 TYSSILEAIGKVD 1620



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 75/202 (37%), Gaps = 2/202 (0%)

Query: 256  AYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
            AY + +I L+   Q ++  +    M  E +CFP    +S  +    KL     A+QL + 
Sbjct: 1186 AYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNE 1245

Query: 315  MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
            M    G  P +  Y M+     K    H     F EM     +P        I  L  A 
Sbjct: 1246 MKEI-GMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAG 1304

Query: 375  EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
              + A   +  +   G  P     N ++  L   GRL D  +  +EM   R +   VT +
Sbjct: 1305 RIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYN 1364

Query: 435  KLKKAFYNESRSMRDIFDSLER 456
             + KA +       ++    ER
Sbjct: 1365 TIIKALFESKSRASEVPSWFER 1386



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 8/194 (4%)

Query: 235  EANKTFGEM---VERFEWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFP 287
            E  + +GEM   ++    NP  V+   T L  ++R     K V +A+     +K   C P
Sbjct: 1124 EVVEQYGEMWKMIQEMVRNPICVVT-PTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQP 1182

Query: 288  TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
              + +++ + +L+         QL++ M      FPD++TY+ +     K  R     + 
Sbjct: 1183 IAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQL 1242

Query: 348  FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
             +EM +   QPT       I +    ++   A+ ++  +      P   +  EL+ GL  
Sbjct: 1243 LNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGK 1302

Query: 408  LGRLSDVRRFAEEM 421
             GR+ +   F  EM
Sbjct: 1303 AGRIDEAYHFFCEM 1316


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 144/361 (39%), Gaps = 45/361 (12%)

Query: 68  IESALACTGIIPTPDLVH------EVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVD 121
           I+ A A    +P P++VH        ++    + ++A  + +    G     + ++ +V+
Sbjct: 331 IDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVN 390

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180
            L K G F      V  M   G   +L T+  + D +C  G+ +EA +    M   G   
Sbjct: 391 GLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSL 450

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           + V  N+L+SA+C                                   K G + EA   F
Sbjct: 451 NTVGYNALISALC-----------------------------------KHGKIHEALDMF 475

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
           GEM  +    P+ +  + + +  L R  ++++AL   R M  E        F+  +   +
Sbjct: 476 GEMSSK-GCKPD-IFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFL 533

Query: 301 KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
           +  +   A++L + M+ F G   D +TYN + + L K   V +    F EMI+    P+ 
Sbjct: 534 RRGEIQEALKLVNDML-FRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSI 592

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 420
           + C   I     A +   A+E    ++  G  P   + N L+ GL   GR+ +     E+
Sbjct: 593 ITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEK 652

Query: 421 M 421
           +
Sbjct: 653 L 653



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 139/329 (42%), Gaps = 13/329 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFD 171
           +  ++D L K  R ++   A+++++E  ++  P    TF ++   +C   +  E     D
Sbjct: 248 YQTLIDALSKRDRVDE---ALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVD 304

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M + G   + +    L+  +C+    T R  E    + K+  P+   F  L+ G+ + G
Sbjct: 305 RMILKGFTPNDMTYGYLMHGLCK----TCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNG 360

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            + EA     + +    + P+ V  + T +  L +      AL+ +  M  + C P L  
Sbjct: 361 RLNEATAFVYDKMINNGYVPD-VFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNT 419

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +D   K      A  +   M+   G   +++ YN +   L K+ ++HE    F EM
Sbjct: 420 YTILIDGFCKKGQLEEAGLILREMLT-KGFSLNTVGYNALISALCKHGKIHEALDMFGEM 478

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
                +P      + I  L   DE E A+ ++  ++  G++    + N L+      G +
Sbjct: 479 SSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEI 538

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
            +  +   +ML R   + E+T + L KA 
Sbjct: 539 QEALKLVNDMLFRGCPLDEITYNGLIKAL 567



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/419 (21%), Positives = 170/419 (40%), Gaps = 43/419 (10%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP  + ++L+L  D  +S ++ F+WAG  +G   S   + L++D LG    F+ +   + 
Sbjct: 70  TPFQLCKLLELPLDVETS-MEIFKWAGAQKGYCHSFSVYYLLIDKLGAAAGFKVIDRLLL 128

Query: 138 VMKEDGVLSLPT-FASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
            MKE+G++   + F  I   Y  AG   +A  +  D+  ++  E    + N +L  +   
Sbjct: 129 QMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVG 188

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
              +  +  F + + K V P+  +F ++++       V+ A     +M +       + +
Sbjct: 189 NCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTK--HGCVPNSM 246

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y+T +  L +  +VDEALK L  M    C P +  F+  +    +LN      +L D  
Sbjct: 247 IYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVD-R 305

Query: 316 MVFHGAFPDSLTY-------------------------------NMIFECLIKNKRVHEV 344
           M+  G  P+ +TY                               N +    ++N R++E 
Sbjct: 306 MILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEA 365

Query: 345 EKF-FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
             F + +MI N + P     +T +  L        A+E+ N +   G  P   +   L+ 
Sbjct: 366 TAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILID 425

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR-CK 459
           G    G+L +      EML +   +  V  + L  A     +     D+F  +  + CK
Sbjct: 426 GFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCK 484



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/399 (19%), Positives = 167/399 (41%), Gaps = 16/399 (4%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVD-FFRWAGRGQRLSPYAWNLMVDVLGK 125
           D++    C     + ++V +VL +  + PS A + F+    +G   + Y + L++  L  
Sbjct: 164 DMKGVYCCEPSFRSYNVVLDVLVVG-NCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCM 222

Query: 126 NGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
               +     +R M + G + +   + ++ D+     + DEA+   + M + G   DV  
Sbjct: 223 VNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNT 282

Query: 185 VNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
            N+++   CR  N+     + ++R + K   P+  ++  L+ G  K   ++EA     ++
Sbjct: 283 FNTVIYGFCRL-NRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKV 341

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR-VMKGENCFPTLKFFSNALDILVKL 302
                    +V+ + T +   +R  +++EA  F+   M      P +  FS  ++ L K 
Sbjct: 342 ------PGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKK 395

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                A++L + M    G  P+  TY ++ +   K  ++ E      EM+   +    + 
Sbjct: 396 GLFGSALELVNDMDA-KGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVG 454

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
               I+ L    +   A++++  +   G  P   + N L+ GL  +  + D      +M+
Sbjct: 455 YNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMV 514

Query: 423 NRRILIYEVTMHKLKKAFYNES---RSMRDIFDSLERRC 458
              ++   VT + L  AF        +++ + D L R C
Sbjct: 515 LEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGC 553



 Score = 42.0 bits (97), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 28/137 (20%), Positives = 59/137 (43%), Gaps = 1/137 (0%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   S    N++++     G+       +R M   G    + T+ S+ +  C  G+  E
Sbjct: 586 KGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQE 645

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  F+ +   G++ D +  N+L+  +CR+             V+    P+  ++ IL+ 
Sbjct: 646 ALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVY 705

Query: 226 GWEKEGNVEEANKTFGE 242
            + K+ N E    T+ +
Sbjct: 706 NFGKQSNSEGQTITYAQ 722


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 137/319 (42%), Gaps = 20/319 (6%)

Query: 136 VRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
           V  MKEDG+     T+ ++       G + EA   FD M   G E D V  NSLL  +  
Sbjct: 243 VDSMKEDGIERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLD-VYG 301

Query: 195 QENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
           +  +   A+  L R++     P   ++  L+  + K+G +EEA +   EM   F      
Sbjct: 302 KARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEM--EFRGMKPD 359

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV--QL 311
           V+ Y T +  L R  ++D AL     M    C P L  +    + L+KL    H V  + 
Sbjct: 360 VVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTY----NALIKL----HGVRGKF 411

Query: 312 WDIMMVFH-----GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            ++M VF      G  PD +T+N +     +N    EV   F EM K  + P      + 
Sbjct: 412 TEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSL 471

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           I+        + A+EI+  ++E GI P  ++ N +L  L   GR     +   EM++R  
Sbjct: 472 ISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDC 531

Query: 427 LIYEVTMHKLKKAFYNESR 445
              E++   L  A+ N  +
Sbjct: 532 KPDELSYSSLLHAYANAKK 550



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/341 (19%), Positives = 133/341 (39%), Gaps = 45/341 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           WN ++ V G+NG   ++    + MK+ G +    T+ S+  SY   G +D+A+  +  M 
Sbjct: 433 WNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMI 492

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+  D+   N++LSA+ R          F   V +   PD  S++ LL  +     ++
Sbjct: 493 EAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLD 552

Query: 235 E----ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           +    +   + E +ER  W        +T ++   +   + E  K  + ++   C   + 
Sbjct: 553 KMKTLSEDIYAERIERHNW------LVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDIN 606

Query: 291 FFSNALDI---------------LVKLNDSTHAVQLWDIMMVFH---------------- 319
             +  + I               L+  N   H+   ++ +M  +                
Sbjct: 607 VLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEKCESILTEI 666

Query: 320 ---GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
              G  PD  +YN +     +  ++ E  + F EM  +  +P  +     I   +     
Sbjct: 667 KSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMF 726

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
           E AI++  Y++  G  P E + N +L G    GR+ + + F
Sbjct: 727 EEAIDLVRYLVTQGCRPNERTFNSILQGYSRHGRMVEAKSF 767


>gi|255660884|gb|ACU25611.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 484

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 133/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHSSKTS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY       E+V  F  M   GVE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEXIVQESVKMFQKMEELGVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   + + E      EM+     PT
Sbjct: 243 VEEMKGF-GIKPNAITYSTLLPGLCNAEXMSEARVILKEMMDKYLAPT 289



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KE  V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKEXIVQESVKMFQKMEELGVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N   +S+ R   +EM+++
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEXMSEARVILKEMMDK 284



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 58/301 (19%), Positives = 117/301 (38%), Gaps = 37/301 (12%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + + +SP    +N M++   +  + E+       MK   +  ++ T+ ++   Y    + 
Sbjct: 177 KSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQV 236

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS-FAI 222
           D+A+   + M   G++ + +  ++LL  +C  E  +   +     + K + P  +S F  
Sbjct: 237 DDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEXMSEARVILKEMMDKYLAPTDNSIFMR 296

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+    K GN++ A      M+ R    P     Y   +    +  Q D+A+K L  +  
Sbjct: 297 LISSHCKSGNLDAAADVLKAMI-RLSV-PTEAGHYGXLIENFCKXGQYDKAVKLLDKLIE 354

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +             DI+++   + H                +   YN + E L  N +  
Sbjct: 355 K-------------DIILRPQSTLHL---------------EPSAYNPMIEYLCNNGQAX 386

Query: 343 EVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
           + E    ++ K   Q PT LN  T I        P+ A E+   +L   +   +++ N L
Sbjct: 387 KAETLVRQLXKLGVQDPTALN--TLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNSL 444

Query: 402 L 402
           +
Sbjct: 445 V 445


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 139/320 (43%), Gaps = 6/320 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +    N+MV    K G+ +   N +  M+E G      T+ ++ + YC AG   E
Sbjct: 377 KGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGE 436

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A  + D M    ++ D V +N++L  +CR E +   A + L+  +K     D  S+  L+
Sbjct: 437 AFRTMDEMGRKNMKMDSVTLNTILRTLCR-EKKLEEAYKLLSSARKRGYFIDEVSYGTLI 495

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G+ K+GNV+ A K + EM E+ E  P  V  Y   +  L +  + ++A+  L  +    
Sbjct: 496 VGYFKDGNVDRALKLWDEMKEK-EIIPSTV-TYNCIIGGLCQCGKTEQAISKLNELLESG 553

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P    ++  L    +  D   A Q  +  MV +   PD  T N++   L     + + 
Sbjct: 554 LLPDETTYNTILHGYCREGDVEKAFQFHN-KMVENSFKPDVFTCNILLRGLCMEGVLEKA 612

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            K F+  +        +   T IT L      + A  + + + E  + P   + N ++  
Sbjct: 613 LKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITA 672

Query: 405 LRNLGRLSDVRRFAEEMLNR 424
           L + GR+ +   F  +ML +
Sbjct: 673 LTDSGRIREAEEFMSKMLEK 692



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 147/351 (41%), Gaps = 9/351 (2%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           AV+F    G+    SP    +N ++D L K GR     + +  MK  G+L +  T+  + 
Sbjct: 227 AVEFLNVMGK-YNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILV 285

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-V 213
             YC  G   EA    ++M+ + +  DV   N L++ +C  E +   A +  + ++ + +
Sbjct: 286 YGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLC-NEGRIEEAFKLRDEMENLKL 344

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  S+  L+ G  +   + EA K   EM E+    P  V  +   +    +  ++D+A
Sbjct: 345 LPDVVSYNTLINGCLEWSKISEAFKLLEEMSEK-GVKPNAV-THNIMVKWYCKEGKMDDA 402

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
              +  M+     P    ++  ++   K  +   A +  D M   +    DS+T N I  
Sbjct: 403 SNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKM-DSVTLNTILR 461

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L + K++ E  K      K  +    ++  T I         + A+++W+ + E  I+P
Sbjct: 462 TLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIP 521

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
              + N ++ GL   G+         E+L   +L  E T + +   +  E 
Sbjct: 522 STVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREG 572



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 86/434 (19%), Positives = 169/434 (38%), Gaps = 82/434 (18%)

Query: 80  TPDLVHEVL--QLSYDSPSSAVDFFRWAGRGQRLSPY---------------------AW 116
           TP LV  +L  +     P+  + FF+WA       P+                     A 
Sbjct: 49  TPPLVLSILSSKTLISRPNILISFFKWAQTNLPTFPHNSLPSLLSLLPSLFSHRKFSDAK 108

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           +L++  +  + R +   + +R+      L      +   +Y  +G+   A   F  M   
Sbjct: 109 SLLLGFIATDRRHDLHLSILRLTSPSKAL----LDTAIGAYVQSGQPHHAFQIFKKMKRL 164

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALE---FLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
            +  +++  N+LL+++ R  +  S +     F + +K  + P+ ++F I++ G+  E   
Sbjct: 165 RLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKF 224

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A + F  ++ ++  +P++V  Y T L TL +  ++ +A   L  MK     P      
Sbjct: 225 KDAVE-FLNVMGKYNCSPDNV-TYNTILDTLCKKGRLGDARDLLMDMKSRGLLPN----R 278

Query: 294 NALDILVK-------LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           N  +ILV        L ++ + ++L    M  +   PD  TYNM+   L    R+ E  K
Sbjct: 279 NTYNILVYGYCKMGWLKEAANVIEL----MTQNNLLPDVWTYNMLINGLCNEGRIEEAFK 334

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP------------- 393
              EM   +  P  ++  T I   L+  +   A ++   + E G+ P             
Sbjct: 335 LRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYC 394

Query: 394 --------------LEASA--------NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 431
                         +E S         N L+ G    G + +  R  +EM  + + +  V
Sbjct: 395 KEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSV 454

Query: 432 TMHKLKKAFYNESR 445
           T++ + +    E +
Sbjct: 455 TLNTILRTLCREKK 468


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 143/341 (41%), Gaps = 6/341 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           R   +G  L    +N +V     +G  +     V  MK DGV  ++ T+ ++   YC   
Sbjct: 212 RMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGK 271

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
             DEA   ++ M   GV  DVV +++L+  +CR + Q S A      + KI V P+  ++
Sbjct: 272 GMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCR-DGQFSEAYALFREMDKIGVAPNHVTY 330

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L++   K     E+    GEMV R       ++ Y   +  L +  +++EA   LR  
Sbjct: 331 CTLIDSLAKARRGSESLGLLGEMVSR--GVVMDLVMYTALMDRLGKEGKIEEAKDVLRHA 388

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
           + +N  P    ++  +D   +  +   A Q+  + M      P+ +T++ I   L+K   
Sbjct: 389 QSDNITPNFVTYTVLVDAHCRAGNIDGAEQVL-LQMEEKSVIPNVVTFSSIINGLVKRGC 447

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           + +   +  +M  +   P  +   T I         E A++++  +L  G+       + 
Sbjct: 448 LGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDS 507

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
           L+ GLR  G +       ++M  R +L+  V    L    +
Sbjct: 508 LVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLF 548



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/334 (19%), Positives = 146/334 (43%), Gaps = 6/334 (1%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +VD L ++G+F + +   R M + GV  +  T+ ++ DS   A +  E++     M   G
Sbjct: 298 LVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRG 357

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEA 236
           V  D+V   +L+  + + E +   A + L   +   + P+  ++ +L++   + GN++ A
Sbjct: 358 VVMDLVMYTALMDRLGK-EGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGA 416

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
            +   +M E+      +V+ + + +  L++   + +A  ++R MK     P +  +   +
Sbjct: 417 EQVLLQMEEKSVI--PNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLI 474

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
           D   K      A+ ++  M+   G   ++   + +   L KN  +   E  F +M +   
Sbjct: 475 DGFFKFQGQEAALDVYRDML-HEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGL 533

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
               +N  T +  L        A ++   ++E  + P     N  +  L  LG+ S+ + 
Sbjct: 534 LLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKS 593

Query: 417 FAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 450
           F +EM N  +   + T + +  A   E ++ + +
Sbjct: 594 FLKEMRNTGLEPDQATYNTMIAARCREGKTSKAL 627



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 142/342 (41%), Gaps = 8/342 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG  +    +  ++D LGK G+ E+  + +R  + D +  +  T+  + D++C AG  D 
Sbjct: 356 RGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDG 415

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A      M    V  +VV  +S+++ + ++     +A +++ ++K   + P+  ++  L+
Sbjct: 416 AEQVLLQMEEKSVIPNVVTFSSIINGLVKR-GCLGKAADYMRKMKDSGIAPNVVTYGTLI 474

Query: 225 EGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +G+ K    E A   + +M+ E  E N       ++ +  L +   ++ A    + M   
Sbjct: 475 DGFFKFQGQEAALDVYRDMLHEGVEANN---FVVDSLVNGLRKNGNIEGAEALFKDMDER 531

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
                   ++  +D L K  +   A ++   +M      PD++ YN+   CL    +  E
Sbjct: 532 GLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELME-KNLSPDAVVYNVFINCLCTLGKFSE 590

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
            + F  EM     +P      T I       +   A+++   +  N I P   +   L+V
Sbjct: 591 AKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVV 650

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           GL   G +   +    EM +       +T  ++ +A     R
Sbjct: 651 GLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRR 692



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 73/355 (20%), Positives = 147/355 (41%), Gaps = 8/355 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDE 165
           RG  L    +  ++D L K G     +   + + E  +       ++F +  C  GK+ E
Sbjct: 531 RGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSE 590

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILL 224
           A      M   G+E D    N++++A CR E +TS+AL+ L  +K+  + P+  ++  L+
Sbjct: 591 AKSFLKEMRNTGLEPDQATYNTMIAARCR-EGKTSKALKLLKEMKRNSIKPNLITYTTLV 649

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  + G V++A     EM     + P   L ++  L      ++ D  L+   +M G  
Sbjct: 650 VGLLEAGVVKKAKFLLNEMASA-GFAPTS-LTHQRVLQACSGSRRPDVILEIHELMMGAG 707

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
               +  ++  + +L     + +A  + D M+   G  PD++T+N +     K+  +   
Sbjct: 708 LHADITVYNTLVHVLCCHGMARNATVVLDEMLT-RGIAPDTITFNALILGHCKSSHLDNA 766

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
              + +M+     P      T +  L  A     A  + + + + G+ P   + + L+ G
Sbjct: 767 FAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTG 826

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES--RSMRDIFDSLERR 457
                   +  R   EM+++  +    T + L   F         +++F  ++RR
Sbjct: 827 YAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRR 881



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 122/307 (39%), Gaps = 6/307 (1%)

Query: 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           VR    DG L +  + ++ D YC       A+   + M+  GV  DVV  NSL++     
Sbjct: 177 VRGRGIDG-LDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHS 235

Query: 196 ENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
            +  + ALE + R+K   V+P+  ++  L+  + K   ++EA   +  MV R    P+ V
Sbjct: 236 GDADA-ALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMV-RSGVLPD-V 292

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           +     +  L R  Q  EA    R M      P    +   +D L K    + ++ L   
Sbjct: 293 VTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLG- 351

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
            MV  G   D + Y  + + L K  ++ E +        +   P  +     +     A 
Sbjct: 352 EMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAG 411

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
             + A ++   + E  ++P   + + ++ GL   G L     +  +M +  I    VT  
Sbjct: 412 NIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYG 471

Query: 435 KLKKAFY 441
            L   F+
Sbjct: 472 TLIDGFF 478



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/213 (19%), Positives = 85/213 (39%), Gaps = 3/213 (1%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           +  + ++    C  G    A +  D M   G+  D +  N+L+   C+  +  +    + 
Sbjct: 712 ITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYA 771

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
             + + + P+  +F  LL G E  G + EA+    +M ++    P + L Y+  +    +
Sbjct: 772 QMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDM-KKVGLEPNN-LTYDILVTGYAK 829

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
                EAL+    M  +   P    +++ +    K      A +L+   M   G    S 
Sbjct: 830 KSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFS-EMKRRGVLHTSS 888

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
           TY+++     K +   EV     +M +  ++P+
Sbjct: 889 TYDILLNGWSKLRNGIEVRILLKDMKELGFKPS 921


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 146/325 (44%), Gaps = 22/325 (6%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP------TFASIFDSYCGA 160
           +G  L+   +N ++    KNG   Q  NA R++KE  +LS+       +F S+    C  
Sbjct: 394 KGLSLTSSTYNTLIKGYCKNG---QADNAERLLKE--MLSIGFNVNQGSFTSVICLLCSH 448

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE----FLNRVKKIVDPD 216
             +D A+     M +  +      + +L+S +C+   + S+ALE    FLN+   +VD  
Sbjct: 449 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKH-GKHSKALELWFQFLNK-GFVVDTR 506

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +   LL G  + G ++EA +   E++ R        ++Y T +      K++DEA  F
Sbjct: 507 TSN--ALLHGLCEAGKLDEAFRIQKEILGR--GCVMDRVSYNTLISGCCGKKKLDEAFMF 562

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
           L  M      P    +S  +  L  +N    A+Q WD     +G  PD  TY+++ +   
Sbjct: 563 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKR-NGMLPDVYTYSVMIDGCC 621

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           K +R  E ++FF EM+    QP  +     I     +    +A+E+   +   GI P  A
Sbjct: 622 KAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSA 681

Query: 397 SANELLVGLRNLGRLSDVRRFAEEM 421
           +   L+ G+  + R+ + +   EEM
Sbjct: 682 TYTSLIKGMSIISRVEEAKLLFEEM 706



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 164/367 (44%), Gaps = 24/367 (6%)

Query: 82  DLVHEVL--QLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           DL+ EV   Q   D    A+D F   A +G   S    N+++  L +   F++   A  V
Sbjct: 192 DLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDV 251

Query: 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI--CRQE 196
           + +     +  F +  +++C  GK +EAV  F  M   GV  +VV  N+++  +  C + 
Sbjct: 252 VCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRY 311

Query: 197 NQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           ++   A  F  + V++ ++P   +++IL++G  +   + +A     EM ++    P +V+
Sbjct: 312 DE---AFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKK--GFPPNVI 366

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y   + + I    +++A++   +M  +    T   ++  +    K   + +A +L   M
Sbjct: 367 VYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM 426

Query: 316 M-----VFHGAFPDSLTYNMIFECLIKNKRVHEVE-KFFHEMIKNEWQPTPLNCATAITM 369
           +     V  G+F   +       CL+ +  + +   +F  EM+     P      T I+ 
Sbjct: 427 LSIGFNVNQGSFTSVI-------CLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISG 479

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
           L    +   A+E+W   L  G +    ++N LL GL   G+L +  R  +E+L R  ++ 
Sbjct: 480 LCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMD 539

Query: 430 EVTMHKL 436
            V+ + L
Sbjct: 540 RVSYNTL 546



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 89/452 (19%), Positives = 171/452 (37%), Gaps = 76/452 (16%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLG 124
           D+   LA  G+ P+    + +L   +  +      + F    +G     Y +   ++   
Sbjct: 212 DVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFC 271

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K G+ E+       M+E GV  ++ TF ++ D     G+YDEA M  + M   G+E  ++
Sbjct: 272 KGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLI 331

Query: 184 AVNSLLSAICR----------------------------------QENQTSRALEFLN-R 208
             + L+  + R                                  +    ++A+E  +  
Sbjct: 332 TYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLM 391

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRG 267
           V K +     ++  L++G+ K G  + A +   EM+   F  N     ++ + +  L   
Sbjct: 392 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQG---SFTSVICLLCSH 448

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM----------- 316
              D AL+F+  M   N  P     +  +  L K    + A++LW   +           
Sbjct: 449 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTS 508

Query: 317 --VFHG---------AFP------------DSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             + HG         AF             D ++YN +       K++ E   F  EM+K
Sbjct: 509 NALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVK 568

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
              +P     +  I  L + ++ E AI+ W+    NG+LP   + + ++ G     R  +
Sbjct: 569 RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEE 628

Query: 414 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            + F +EM+++ +    V  + L +A+    R
Sbjct: 629 GQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGR 660



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 108/236 (45%), Gaps = 7/236 (2%)

Query: 124 GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           GK+ +  ++W   + + +  V+   T  ++    C AGK DEA      +   G   D V
Sbjct: 484 GKHSKALELW--FQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRV 541

Query: 184 AVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
           + N+L+S  C ++ +   A  FL+  VK+ + PD  +++IL+ G      VEEA + F +
Sbjct: 542 SYNTLISGCCGKK-KLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQ-FWD 599

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
             +R    P+ V  Y   +    + ++ +E  +F   M  +N  P    +++ +    + 
Sbjct: 600 DCKRNGMLPD-VYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRS 658

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
              + A++L + M    G  P+S TY  + + +    RV E +  F EM     +P
Sbjct: 659 GRLSMALELREDMK-HKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP 713


>gi|255660960|gb|ACU25649.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 376

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 165/364 (45%), Gaps = 20/364 (5%)

Query: 80  TPD-LVHEVLQLSYDSPSSAVDFFR-W---AGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           +PD +V+  +   Y   +   D F  W      G R S  ++N+M+  L  NG+ +++ +
Sbjct: 22  SPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNGKVDEVIS 80

Query: 135 AVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
              +MKE G V    T+  +   +C  G  D+++   ++    G   D  A +++++ +C
Sbjct: 81  IWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLC 140

Query: 194 RQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           ++ N   RAL  LN  +K    P+   +  L+ G       E+A + F EM      +P 
Sbjct: 141 KEAN-LDRALSVLNDMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPT 198

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            ++ Y T +  L + +   EA   ++ +  +   P +  +S  +  L   +    A+QLW
Sbjct: 199 -IITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALQLW 257

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML-- 370
           +  +   G  PD   +N++   L    ++      + +M  N W+  P N  +  T++  
Sbjct: 258 N-QVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDM--NHWKCAP-NLVSHNTLMEG 313

Query: 371 --LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 428
              D D    A+ IW  IL NG+ P   S N  L GL +  R+SD   F  + + ++I++
Sbjct: 314 FYKDGDIRN-ALVIWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVL 372

Query: 429 YEVT 432
            ++T
Sbjct: 373 TKIT 376



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/340 (18%), Positives = 135/340 (39%), Gaps = 44/340 (12%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
            ++SP A  +N M++   +  + +  +    +M  +G  S+ +F  +       GK DE 
Sbjct: 19  SKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVSSFNIMMRGLFDNGKVDEV 78

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILL 224
           +  +++M   G  +D +    L+   C+    +++   LE   +   ++D    +++ ++
Sbjct: 79  ISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAF--AYSAMI 136

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  KE N++ A     +M++       HV  Y T +  L+   + ++A++  R M   +
Sbjct: 137 NGLCKEANLDRALSVLNDMIKSGCKPNVHV--YNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C PT+                                    +TYN +   L KN+   E 
Sbjct: 195 CSPTI------------------------------------ITYNTLINGLCKNEMFGEA 218

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
                E++     P  +  +  +  L      E A+++WN +   G  P     N L+ G
Sbjct: 219 YNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALQLWNQVTSKGFKPDVQMHNILIHG 278

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           L ++G++        +M + +     V+ + L + FY + 
Sbjct: 279 LCSVGKMQLALSLYFDMNHWKCAPNLVSHNTLMEGFYKDG 318


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 158/372 (42%), Gaps = 43/372 (11%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNA-VRVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
           Q LSP    +N ++  L K    ++     VR++K   + +  T  S+   YC +GK ++
Sbjct: 232 QGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPND 291

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  F  M   GVE DV   N+L+  +C+          F + VK+   P+  ++  LL 
Sbjct: 292 AIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLH 351

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  EG++ + +    +M+ R    P+H + +   + T  +  +VD+A+     M+ +  
Sbjct: 352 GYATEGSLVKMHHLL-DMMVRNGIQPDHYI-FNILIGTYTKHGKVDDAMLLFSKMRRQGL 409

Query: 286 FP---TLKFFSNALDILVKLNDSTH-------------------------AVQLWD---- 313
            P   T     +AL ++ K++D+                           A   WD    
Sbjct: 410 NPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEE 469

Query: 314 --IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
             + M+  G  P+++ +N +   L K   V   +  F  M++ + Q   +   T I    
Sbjct: 470 LAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYC 529

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV----RRFAEEMLNRRIL 427
              + + A ++   ++ +G+ P E + N ++ G    GR+ D     R+ A + +N  I+
Sbjct: 530 LHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIV 589

Query: 428 IYEVTMHKLKKA 439
            Y   +  L +A
Sbjct: 590 TYSTILQGLFQA 601



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 115/293 (39%), Gaps = 39/293 (13%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+++    K+G+ +        M+  G+     T+  + D+ C  GK D+A+  F  
Sbjct: 379 YIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGR 438

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           +   G+  D V   +L+  +C ++         +  + + + P+   F  LL    KEG 
Sbjct: 439 LISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGM 498

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V  A   F  MV R +   + V+ Y T +       +VDEA K L               
Sbjct: 499 VARAKNIFDLMV-RVDVQRD-VITYNTLIDGYCLHGKVDEAAKLLE-------------- 542

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
                                  MV  G  P+ +TYN +     KN R+ +    F +M 
Sbjct: 543 ----------------------GMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMA 580

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
                P  +  +T +  L  A     A E++ +++++GI     + N +L+GL
Sbjct: 581 SKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGL 633



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 111/297 (37%), Gaps = 5/297 (1%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
           + D A   FD M   G+  DVV  NS++SA+ +       A+  +  VK    P+  +  
Sbjct: 218 QLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHN 277

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            LL G+   G   +A   F  M  R    P+ V  Y T +  L +  +  EA K    M 
Sbjct: 278 SLLHGYCSSGKPNDAIGVFKRMC-RDGVEPD-VFTYNTLMGYLCKNGRSMEARKIFDSMV 335

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
                P    +   L              L D MMV +G  PD   +N++     K+ +V
Sbjct: 336 KRGHKPNSATYGTLLHGYATEGSLVKMHHLLD-MMVRNGIQPDHYIFNILIGTYTKHGKV 394

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            +    F +M +    P  +     +  L    + + A+  +  ++  G+ P       L
Sbjct: 395 DDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNL 454

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR--DIFDSLER 456
           + GL    +       A EM+ R I    +  + L      E    R  +IFD + R
Sbjct: 455 IHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVR 511



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 135/309 (43%), Gaps = 11/309 (3%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYD 164
           GRG   +   +N +++ L K G   +  N   +M + D    + T+ ++ D YC  GK D
Sbjct: 476 GRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVD 535

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA    + M + GV+ + V  N++++  C+          F     K V+P   +++ +L
Sbjct: 536 EAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTIL 595

Query: 225 EGWEKEGNVEEANKTFGEMVE---RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +G  +      A + +  M++   +F+     +  Y   L+ L +    D+AL+  + + 
Sbjct: 596 QGLFQARRTAAAKELYLWMIKSGIKFD-----IGTYNIILLGLCQNNCTDDALRIFQNLY 650

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
             +     + F+  +D L+K      A  L+  ++   G  P+ +TY ++ + LI+   +
Sbjct: 651 LIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLA-RGLVPNVVTYWLMMKSLIEQGLL 709

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E++  F  + KN            +  LL   E   A    + I EN    LEAS  E 
Sbjct: 710 EELDDLFLSLEKNGCTANSRMLNALVGKLLQKGEVRKAGVYLSKIDENN-FSLEASTAES 768

Query: 402 LVGLRNLGR 410
           LV L + G+
Sbjct: 769 LVLLVSSGK 777


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 147/319 (46%), Gaps = 14/319 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + + Y + + +  L ++ + E+      +MK+ GVL +L T++++ D YC  G   +A
Sbjct: 229 GIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQA 288

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICR-QENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
              +  + +  +  +VV   +L+   C+ +E  T+R+L F++ VK  VDP+   +  L+ 
Sbjct: 289 YGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSL-FVHMVKFGVDPNLYVYNCLIH 347

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K GN+ EA     EM E    +P+ V  Y   +  L    QV EA +  + MK E  
Sbjct: 348 GHCKSGNMLEAVGLLSEM-ESLNLSPD-VFTYTILINGLCIEDQVAEANRLFQKMKNERI 405

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
           FP+   +++ +    K  +   A+ L   M    G  P+ +T++ + +     + +    
Sbjct: 406 FPSSATYNSLIHGYCKEYNMEQALDLCSEMTA-SGVEPNIITFSTLIDGYCNVRDIKAAM 464

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEI----AIEIWNYILENGILPLEASANEL 401
             + EM      P         T L+DA   E     A+ +++ +LE GI P + +   L
Sbjct: 465 GLYFEMTIKGIVPD----VVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACL 520

Query: 402 LVGLRNLGRLSDVRRFAEE 420
           + G    GRLS    F +E
Sbjct: 521 VDGFWKEGRLSVAIDFYQE 539



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 152/359 (42%), Gaps = 11/359 (3%)

Query: 104 WAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGA 160
           W  R  + SP   A   +++ L +  RF+ +W   ++M   G++  +  +  +F      
Sbjct: 153 WVSREMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQ 212

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDS 219
           G Y +     D M+  G++ +V      +  +CR +N+   A +    +KK  V P+  +
Sbjct: 213 GLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCR-DNKMEEAEKMFELMKKHGVLPNLYT 271

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           ++ +++G+ K GNV +A   + E++   E  P +V+ + T +    + +++  A      
Sbjct: 272 YSAMIDGYCKTGNVRQAYGLYKEILVA-ELLP-NVVVFGTLVDGFCKARELVTARSLFVH 329

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M      P L  ++  +    K  +   AV L   M   + + PD  TY ++   L    
Sbjct: 330 MVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLS-PDVFTYTILINGLCIED 388

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           +V E  + F +M      P+     + I         E A+++ + +  +G+ P   + +
Sbjct: 389 QVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFS 448

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES---RSMRDIFDSLE 455
            L+ G  N+  +        EM  + I+   VT   L  A + E+    ++R   D LE
Sbjct: 449 TLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLE 507



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 7/185 (3%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + +R+ P +  +N ++    K    EQ  +    M   GV  ++ TF+++ D YC     
Sbjct: 401 KNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDI 460

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
             A+  +  M++ G+  DVV   +L+ A  ++ N       + + ++  + P+  +FA L
Sbjct: 461 KAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACL 520

Query: 224 LEGWEKEGNVEEANKTFGE-MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           ++G+ KEG +  A   + E   +R  WN  HV  +   +  L +   +  A +F   M+ 
Sbjct: 521 VDGFWKEGRLSVAIDFYQENNQQRSCWN--HV-GFTCLIEGLCQNGYILRASRFFSDMRS 577

Query: 283 ENCFP 287
               P
Sbjct: 578 CGITP 582


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 145/327 (44%), Gaps = 12/327 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYC 158
           F++   R  +    A+N M+ +L   G++E++      M  +G       T++++  ++C
Sbjct: 149 FYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFC 208

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDG 217
             G+ D A+   + M   G+ Q    + ++L A+  + N    AL     ++ +   PD 
Sbjct: 209 KLGRRDSAIQLLNEMKEIGM-QPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDV 267

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++  L+ G  K G ++EA   F EM +R    P+ V      +  L +  ++D+A+K  
Sbjct: 268 FTYTELIRGLGKAGRIDEAYHFFCEM-QREGCRPDTVFM-NNMINFLGKAGRLDDAMKLF 325

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
           + M+   C P++  ++  +  L +       V  W   M   G  P S TY+++ +   K
Sbjct: 326 QEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCK 385

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             R+ +      EM +  + P P    + I  L  A   ++A E++  + EN      +S
Sbjct: 386 TNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENC---GSSS 442

Query: 398 ANELLVGLRNL---GRLSDVRRFAEEM 421
           A    V +++L   GRL D     +EM
Sbjct: 443 ARVYAVMIKHLGKAGRLDDAINMFDEM 469



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 168/382 (43%), Gaps = 14/382 (3%)

Query: 49  ISSSARI--ICEILAHASSDDIESALACTGIIPTPDLVHEVLQL--SYDSPSSAVDFFRW 104
           ++ SA I   C++    S+  + + +   G+ PT  +   ++ L   ++    A+  F  
Sbjct: 198 VTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEE 257

Query: 105 AGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AG 161
             R Q   P  + +  ++  LGK GR ++ ++    M+ +G      F +   ++ G AG
Sbjct: 258 M-RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAG 316

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
           + D+A+  F  M        VV  N+++ A+   +++ S    +  R+K+  + P   ++
Sbjct: 317 RLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTY 376

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           +IL++G+ K   +E+A     EM E+    P    AY + +  L + K+ D A +  + +
Sbjct: 377 SILIDGFCKTNRMEKAMMLLEEMDEK--GFPPCPAAYCSLIDALGKAKRYDLACELFQEL 434

Query: 281 KGENCFPT-LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           K ENC  +  + ++  +  L K      A+ ++D M    G  PD   YN +   L +  
Sbjct: 435 K-ENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKL-GCAPDVYAYNALMSGLARTG 492

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
            + E       M ++   P   +    +  L     P  A+E+ + + ++ + P   S N
Sbjct: 493 MLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYN 552

Query: 400 ELLVGLRNLGRLSDVRRFAEEM 421
            +L  L + G   +  +  +EM
Sbjct: 553 TVLGALSHAGMFEEASKLMKEM 574



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 5/193 (2%)

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           P A+  ++D LGK  R++      + +KE+ G  S   +A +      AG+ D+A+  FD
Sbjct: 408 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFD 467

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKE 230
            M+  G   DV A N+L+S + R       AL  + R+++    PD +S+ I+L G  K 
Sbjct: 468 EMNKLGCAPDVYAYNALMSGLART-GMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKT 526

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G    A +    M ++    P+ V++Y T L  L      +EA K ++ M        L 
Sbjct: 527 GGPHRAMEMLSNM-KQSTVRPD-VVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLI 584

Query: 291 FFSNALDILVKLN 303
            +S+ L+ + K++
Sbjct: 585 TYSSILEAIGKVD 597



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 75/192 (39%), Gaps = 3/192 (1%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           AY + +I L+   Q ++  +    M  E +CFP    +S  +    KL     A+QL + 
Sbjct: 163 AYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNE 222

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
           M    G  P +  Y M+     K    H     F EM     +P        I  L  A 
Sbjct: 223 MKEI-GMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAG 281

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
             + A   +  +   G  P     N ++  L   GRL D  +  +EM   R +   VT +
Sbjct: 282 RIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYN 341

Query: 435 KLKKAFYNESRS 446
            + KA + ES+S
Sbjct: 342 TIIKALF-ESKS 352



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 8/194 (4%)

Query: 235 EANKTFGEM---VERFEWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFP 287
           E  + +GEM   ++    NP  V+   T L  ++R     K V +A+     +K   C P
Sbjct: 101 EVVEQYGEMWKMIQEMVRNPICVVT-PTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQP 159

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
             + +++ + +L+         QL++ M      FPD++TY+ +     K  R     + 
Sbjct: 160 IAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQL 219

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
            +EM +   QPT       I +    ++   A+ ++  +      P   +  EL+ GL  
Sbjct: 220 LNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGK 279

Query: 408 LGRLSDVRRFAEEM 421
            GR+ +   F  EM
Sbjct: 280 AGRIDEAYHFFCEM 293


>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 814

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 162/373 (43%), Gaps = 25/373 (6%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P  V  VL+ S D    A+ FF WA R  R    P  +  M++VL K    +     + +
Sbjct: 177 PSQVCAVLR-SQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKMCQGARRVLVL 235

Query: 139 MKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           MK  G+   P  F  +  SY  AG+  +A+    +M   GVE +++  N+ +    R  N
Sbjct: 236 MKRRGIYRTPEAFLRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRA-N 294

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +  +AL FL R++ + + P+  ++  ++ G+     VEEA +   +M  +    P+ V +
Sbjct: 295 RLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLDDMPSK-GCLPDKV-S 352

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ-LWDIM 315
           Y T +  L + K++ E    ++ M  E+     +   N L  ++  +D  HA + LW + 
Sbjct: 353 YYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQVTYNTLIHMLTKHD--HADEALWFLK 410

Query: 316 MVFHGAFP-DSLTYNMIFECLIKNKRVHEVEKFFHEMI-KNEWQPTPLNCATAITMLLDA 373
                 F  D + Y+ I   L K  R+ E +   +EM+ K    P  +     +      
Sbjct: 411 DAEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRL 470

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR--------R 425
            E + A ++   +  +G  P   S   LL GL   G+  + R    EM+N          
Sbjct: 471 GEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLEAR----EMMNMSEEQWWSPN 526

Query: 426 ILIYEVTMHKLKK 438
            + Y V MH L+K
Sbjct: 527 SITYSVLMHGLRK 539



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 93/471 (19%), Positives = 175/471 (37%), Gaps = 95/471 (20%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQR--LSP--YAWNLMVDVLGKNGRFEQ 131
           GI  TP+    V+ +SY       D  +     QR  + P     N  +DV  +  R E+
Sbjct: 240 GIYRTPEAFLRVM-VSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEK 298

Query: 132 MWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
               +  M+  G++ ++ T+  +   YC   + +EA+   D M   G   D V+  +++ 
Sbjct: 299 ALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMG 358

Query: 191 AICRQE-----------------------------------NQTSRALEFLNRVK-KIVD 214
            +C+++                                   +    AL FL   + K   
Sbjct: 359 YLCKEKRIVEVRDLMKKMAKEHGLVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFR 418

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
            D   ++ ++    KEG + EA     EM+ +    P+ V+ Y   +    R  +VD+A 
Sbjct: 419 IDKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPD-VVTYTAVVNGFCRLGEVDKAK 477

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM------------------- 315
           K L++M      P    ++  L+ L +   S  A ++ ++                    
Sbjct: 478 KLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGL 537

Query: 316 ---------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
                          MV  G FP  +  N++ + L ++ R HE  KF  E +        
Sbjct: 538 RKEGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINV 597

Query: 361 LNCATAITMLLDADEPEIAIEIWN--YILENGILPLEASANELLVGLRNLGRLSDVRRFA 418
           +N  T I      DE + A+ + +  Y++         +   L+  L   GR+++     
Sbjct: 598 VNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTT--LVDALGKKGRIAEATELM 655

Query: 419 EEMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFDSLER-----RCKT 460
           ++ML++ I    + Y   +H+     Y +   + D+   LE+     +CKT
Sbjct: 656 KKMLHKGIDPTPVTYRTVIHR-----YCQMEKVDDLVAILEKMILRQKCKT 701


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 133/316 (42%), Gaps = 41/316 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y ++++VD   K GR ++  N + +M + G+   + T+ S+ D YC   + ++A   F+ 
Sbjct: 267 YTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNT 326

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M+  GV  +V + N +++  C+ + +   A+     +  K + PD  ++  L++G  K G
Sbjct: 327 MAQGGVTANVQSYNIMINGFCKIK-KVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSG 385

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +  A K   EM +R    P   + Y + L  L +  QVD+A+  L  MK E        
Sbjct: 386 KISYALKLVDEMHDR--GVPHDKITYNSILDALCKNHQVDKAIALLTKMKDE-------- 435

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
                                       G  PD  TY ++ + L K  R+ + +  F ++
Sbjct: 436 ----------------------------GIQPDMYTYTILIDGLCKGGRLKDAQNIFEDL 467

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +   +  T       I    D D  + A+ + + + +NG +P   +   +++ L      
Sbjct: 468 LVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDEN 527

Query: 412 SDVRRFAEEMLNRRIL 427
               +   EM+ R +L
Sbjct: 528 DMAEKLLREMIARGLL 543



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 150/344 (43%), Gaps = 46/344 (13%)

Query: 96  SSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFAS 152
           S+A+   R    G+ + P    +N ++D + K     + ++    M   G+   + T+++
Sbjct: 178 SAALQLLRRV-DGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSA 236

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKK 211
           +   +C  GK ++A+  F+ M    +  DV   + L+   C+ E +   A   L   +K+
Sbjct: 237 LISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCK-EGRVKEAKNVLAMMMKQ 295

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            + PD  ++  L++G+     V +A   F  M +       +V +Y   +    + K+VD
Sbjct: 296 GIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQ--GGVTANVQSYNIMINGFCKIKKVD 353

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           EA+   + M  +N  P +  +++ +D L K    ++A++L D M    G   D +TYN I
Sbjct: 354 EAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHD-RGVPHDKITYNSI 412

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
            + L KN   H+V+K                   AI +L    +  I  +++ Y +    
Sbjct: 413 LDALCKN---HQVDK-------------------AIALLTKMKDEGIQPDMYTYTI---- 446

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNR--RILIYEVTM 433
                    L+ GL   GRL D +   E++L +   I +Y  T+
Sbjct: 447 ---------LIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTV 481



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 140/319 (43%), Gaps = 16/319 (5%)

Query: 115 AWNLMVDVLGKNGR----FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
            +N++++   + G     F    N ++   E   ++L T   +    C  G+  +A+   
Sbjct: 93  TFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTT---LIKGLCLKGQIHQALHFH 149

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEK 229
           D +   G   + V   +L++ +C+   QTS AL+ L RV  K+V P+   +  +++   K
Sbjct: 150 DKVVALGFHLNKVCYGTLINGLCKV-GQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCK 208

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
              V EA   + EMV +   +P+ V+ Y   +       ++++A+     M  E   P +
Sbjct: 209 VKLVNEAFDLYSEMVSK-GISPD-VVTYSALISGFCILGKLNDAIGLFNKMISEEINPDV 266

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE--CLIKNKRVHEVEKF 347
             FS  +D   K      A  +  +MM   G  PD +TY  + +  CL+K  +V++ +  
Sbjct: 267 YTFSILVDGFCKEGRVKEAKNVLAMMMK-QGIKPDVVTYCSLMDGYCLVK--QVNKAKSI 323

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           F+ M +        +    I       + + A+ ++  +    I+P   + N L+ GL  
Sbjct: 324 FNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCK 383

Query: 408 LGRLSDVRRFAEEMLNRRI 426
            G++S   +  +EM +R +
Sbjct: 384 SGKISYALKLVDEMHDRGV 402



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 5/245 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  I  S      Y  A+     M  +G+  D+V  N L++   +  +       F N +
Sbjct: 59  FGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANIL 118

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGK 268
           KK  +P+  +   L++G   +G + +A     ++V   F  N    + Y T +  L +  
Sbjct: 119 KKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNK---VCYGTLINGLCKVG 175

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           Q   AL+ LR + G+   P +  ++  +D + K+     A  L+   MV  G  PD +TY
Sbjct: 176 QTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYS-EMVSKGISPDVVTY 234

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           + +        ++++    F++MI  E  P     +  +         + A  +   +++
Sbjct: 235 SALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMK 294

Query: 389 NGILP 393
            GI P
Sbjct: 295 QGIKP 299



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 8/155 (5%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG       +N ++D L KN + ++    +  MK++G+   + T+  + D  C  G+  +
Sbjct: 400 RGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKD 459

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSF-AIL 223
           A   F+ + + G    V     ++   C   +   +AL  L++++     P+  ++  I+
Sbjct: 460 AQNIFEDLLVKGYNITVYTYTVMIQGFC-DNDLFDKALALLSKMEDNGCIPNAKTYEIII 518

Query: 224 LEGWEKEGNVEEANKTFGEMVER---FEWNPEHVL 255
           L  +EK+ N + A K   EM+ R   F W   + L
Sbjct: 519 LSLFEKDEN-DMAEKLLREMIARGLLFGWKKAYCL 552



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 66/157 (42%), Gaps = 5/157 (3%)

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P +  F   L  LVK+N    A+ L    M F+G   D +T+N++  C  +    H    
Sbjct: 54  PPIFEFGKILGSLVKINCYQTAISLHR-EMEFNGIASDLVTFNILINCFSQLGHTHFSFS 112

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            F  ++K  ++P  +   T I  L    +   A+   + ++  G    +     L+ GL 
Sbjct: 113 VFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLC 172

Query: 407 NLGRLSD----VRRFAEEMLNRRILIYEVTMHKLKKA 439
            +G+ S     +RR   +++   +++Y   +  + K 
Sbjct: 173 KVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKV 209


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 146/356 (41%), Gaps = 10/356 (2%)

Query: 104 WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           WA +G  L      ++V    + GRF  + +  R M E G   ++  +++  D  C  G 
Sbjct: 208 WA-QGFCLDSATCTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGY 266

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKI-VDPDGDSF 220
             +A    + M   G++ +V    SL+  +C+      RA   FL  VK     P+  ++
Sbjct: 267 VKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKI-GWMERAFRLFLKLVKSSSYKPNVHTY 325

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            +++ G+ KEG +  A    G MVE  +    +   Y T +    +G   D A + +  M
Sbjct: 326 TVMIGGYCKEGKLARAEMLLGRMVE--QGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKM 383

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
           K E   P +  ++  +    K      A ++   M    G   D +TY ++     K   
Sbjct: 384 KLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLR-MATSQGLHLDKVTYTILITEHCKQGH 442

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           +      F +M +    P      T I M     + E + ++++  L  G++P + +   
Sbjct: 443 ITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTS 502

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 454
           ++ G   LG+L+   +  E M+    L   +T   L  +   ESR    R +F+++
Sbjct: 503 MIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEARALFETM 558



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/334 (19%), Positives = 143/334 (42%), Gaps = 9/334 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + + +M+    K G+  +    +  M E G+  +  T+ ++   +C  G +D A    + 
Sbjct: 323 HTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNK 382

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEG 231
           M + G   ++   N+++   C++  +   A + L     + +  D  ++ IL+    K+G
Sbjct: 383 MKLEGFLPNIYTYNAIIGGFCKK-GKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQG 441

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           ++  A   F +M E+   +P+ +  Y T +    + +Q++++ +           PT + 
Sbjct: 442 HITCALDLFKQMAEK-SCHPD-IHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQT 499

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +++ +    +L   T A+++++  MV HG  PDS+TY  +   L K  R+ E    F  M
Sbjct: 500 YTSMIAGYCRLGKLTSALKVFE-RMVQHGCLPDSITYGALISSLCKESRLEEARALFETM 558

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +     P  +   T        D+  IA+   + + +        +A+ L+  L  +G L
Sbjct: 559 LDKHLVPCDVTRVTLAYEYCRRDKITIAVSFLDRLDKR---QQAHTADALVRKLSTVGNL 615

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
                F + +L++   +   T      + Y  +R
Sbjct: 616 DAASLFLKNVLDKHYAVDHATYTSFINSCYESNR 649


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 146/325 (44%), Gaps = 22/325 (6%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP------TFASIFDSYCGA 160
           +G  L+   +N ++    KNG   Q  NA R++KE  +LS+       +F S+    C  
Sbjct: 383 KGLSLTSSTYNTLIKGYCKNG---QADNAERLLKE--MLSIGFNVNQGSFTSVICLLCSH 437

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE----FLNRVKKIVDPD 216
             +D A+     M +  +      + +L+S +C+   + S+ALE    FLN+   +VD  
Sbjct: 438 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKH-GKHSKALELWFQFLNK-GFVVDTR 495

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +   LL G  + G ++EA +   E++ R        ++Y T +      K++DEA  F
Sbjct: 496 TSN--ALLHGLCEAGKLDEAFRIQKEILGR--GCVMDRVSYNTLISGCCGKKKLDEAFMF 551

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
           L  M      P    +S  +  L  +N    A+Q WD     +G  PD  TY+++ +   
Sbjct: 552 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKR-NGMLPDVYTYSVMIDGCC 610

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           K +R  E ++FF EM+    QP  +     I     +    +A+E+   +   GI P  A
Sbjct: 611 KAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSA 670

Query: 397 SANELLVGLRNLGRLSDVRRFAEEM 421
           +   L+ G+  + R+ + +   EEM
Sbjct: 671 TYTSLIKGMSIISRVEEAKLLFEEM 695



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 164/367 (44%), Gaps = 24/367 (6%)

Query: 82  DLVHEVL--QLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           DL+ EV   Q   D    A+D F   A +G   S    N+++  L +   F++   A  V
Sbjct: 181 DLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDV 240

Query: 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI--CRQE 196
           + +     +  F +  +++C  GK +EAV  F  M   GV  +VV  N+++  +  C + 
Sbjct: 241 VCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRY 300

Query: 197 NQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
           ++   A  F  + V++ ++P   +++IL++G  +   + +A     EM ++    P +V+
Sbjct: 301 DE---AFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKK--GFPPNVI 355

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y   + + I    +++A++   +M  +    T   ++  +    K   + +A +L   M
Sbjct: 356 VYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM 415

Query: 316 M-----VFHGAFPDSLTYNMIFECLIKNKRVHEVE-KFFHEMIKNEWQPTPLNCATAITM 369
           +     V  G+F   +       CL+ +  + +   +F  EM+     P      T I+ 
Sbjct: 416 LSIGFNVNQGSFTSVI-------CLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISG 468

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
           L    +   A+E+W   L  G +    ++N LL GL   G+L +  R  +E+L R  ++ 
Sbjct: 469 LCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMD 528

Query: 430 EVTMHKL 436
            V+ + L
Sbjct: 529 RVSYNTL 535



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 89/452 (19%), Positives = 171/452 (37%), Gaps = 76/452 (16%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLG 124
           D+   LA  G+ P+    + +L   +  +      + F    +G     Y +   ++   
Sbjct: 201 DVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFC 260

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K G+ E+       M+E GV  ++ TF ++ D     G+YDEA M  + M   G+E  ++
Sbjct: 261 KGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLI 320

Query: 184 AVNSLLSAICR----------------------------------QENQTSRALEFLN-R 208
             + L+  + R                                  +    ++A+E  +  
Sbjct: 321 TYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLM 380

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRG 267
           V K +     ++  L++G+ K G  + A +   EM+   F  N     ++ + +  L   
Sbjct: 381 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQG---SFTSVICLLCSH 437

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM----------- 316
              D AL+F+  M   N  P     +  +  L K    + A++LW   +           
Sbjct: 438 LMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTS 497

Query: 317 --VFHG---------AFP------------DSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             + HG         AF             D ++YN +       K++ E   F  EM+K
Sbjct: 498 NALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVK 557

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
              +P     +  I  L + ++ E AI+ W+    NG+LP   + + ++ G     R  +
Sbjct: 558 RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEE 617

Query: 414 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            + F +EM+++ +    V  + L +A+    R
Sbjct: 618 GQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGR 649



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 108/236 (45%), Gaps = 7/236 (2%)

Query: 124 GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           GK+ +  ++W   + + +  V+   T  ++    C AGK DEA      +   G   D V
Sbjct: 473 GKHSKALELW--FQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRV 530

Query: 184 AVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
           + N+L+S  C ++ +   A  FL+  VK+ + PD  +++IL+ G      VEEA + F +
Sbjct: 531 SYNTLISGCCGKK-KLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQ-FWD 588

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
             +R    P+ V  Y   +    + ++ +E  +F   M  +N  P    +++ +    + 
Sbjct: 589 DCKRNGMLPD-VYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRS 647

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
              + A++L + M    G  P+S TY  + + +    RV E +  F EM     +P
Sbjct: 648 GRLSMALELREDMK-HKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP 702


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 146/329 (44%), Gaps = 7/329 (2%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + Q LSP  + +N ++    K G+ E+  + +  M   G+  ++ T+ +    YC AG+ 
Sbjct: 504 KDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEM 563

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
             A  SF  M   G+  + V    L+   C+  N T    +F   + + V PD  + ++L
Sbjct: 564 QAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVL 623

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G  K G ++EA   F E++++    P+ V  Y + +  L +   +  A +    M  +
Sbjct: 624 IHGLSKNGKLQEAMGVFSELLDK-GLVPD-VFTYTSLISNLCKEGDLKAAFELHDDMCKK 681

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P +  ++  ++ L KL +   A +L+D  +   G   +S+TY+ I     K+  + E
Sbjct: 682 GINPNIVTYNALINGLCKLGEIAKARELFD-GIPEKGLARNSVTYSTIIAGYCKSANLTE 740

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
             + FH M      P        I     A   E A+ ++  ++E GI    A  N L+ 
Sbjct: 741 AFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPA-FNALID 799

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
           G   LG+L +  +  E+M++  I    VT
Sbjct: 800 GFFKLGKLIEAYQLVEDMVDNHITPNHVT 828



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 132/315 (41%), Gaps = 17/315 (5%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D   K+G   + +   R M + GVL  + T + +       GK  EA+  F  +   G
Sbjct: 588 LIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKG 647

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEA 236
           +  DV    SL+S +C+ E     A E  + + KK ++P+  ++  L+ G  K G + +A
Sbjct: 648 LVPDVFTYTSLISNLCK-EGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKA 706

Query: 237 NKTFGEMVERFEWNPEHVLA-----YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
                   E F+  PE  LA     Y T +    +   + EA +    MK     P    
Sbjct: 707 R-------ELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFV 759

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +   +D   K  ++  A+ L+ + MV  G    +  +N + +   K  ++ E  +   +M
Sbjct: 760 YCALIDGCCKAGNTEKALSLF-LGMVEEG-IASTPAFNALIDGFFKLGKLIEAYQLVEDM 817

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           + N   P  +     I         + A +++  + +  ++P   +   LL G   +GR 
Sbjct: 818 VDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRR 877

Query: 412 SDVRRFAEEMLNRRI 426
           S++    +EM+ R I
Sbjct: 878 SEMFSLFDEMVARGI 892



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/306 (19%), Positives = 120/306 (39%), Gaps = 47/306 (15%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + +I       G+++EA+    VM   G+  DV   N+++   C+           +  +
Sbjct: 480 YTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMI 539

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            K + P+  ++   + G+ + G ++ A ++F EM++     P  V+              
Sbjct: 540 AKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDS-GIAPNDVIC------------- 585

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
                                  ++ +D   K  ++T A   +  M+   G  PD  T++
Sbjct: 586 -----------------------TDLIDGYCKDGNTTKAFAKFRCMLD-QGVLPDVQTHS 621

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
           ++   L KN ++ E    F E++     P      + I+ L    + + A E+ + + + 
Sbjct: 622 VLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKK 681

Query: 390 GILPLEASANELLVGLRNLGRLSDVRRF----AEEMLNRRILIYEVTMHKLKKAFYNESR 445
           GI P   + N L+ GL  LG ++  R       E+ L R  + Y   +     A Y +S 
Sbjct: 682 GINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTII-----AGYCKSA 736

Query: 446 SMRDIF 451
           ++ + F
Sbjct: 737 NLTEAF 742



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 148/376 (39%), Gaps = 56/376 (14%)

Query: 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
           K  R E  W   + M    V  + T+ ++ ++YC  GK +E       M   G   ++V 
Sbjct: 210 KGNRVELFWKVYKGMLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVT 269

Query: 185 VNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
            + +++ +CR       ALE    +  K + PD   +A L++G+ ++    E      EM
Sbjct: 270 YSVVIAGLCRA-GDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEM 328

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALK-----FLRVMKGENCFPTLKFFSNALDI 298
                  P+HV AY   +   ++   +  A +     F R +K      T  +++  +  
Sbjct: 329 Y-TMGLKPDHV-AYTALINGFVKQSDIGGAFQVKEEMFARKIK----LNTFTYYA-LIHG 381

Query: 299 LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI-------------FECLIKNKR----- 340
           L K+ D   A  L+  M +  G  PD  TYN +             +E LI+ K+     
Sbjct: 382 LCKIGDLEKAEDLFSEMTMM-GIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTA 440

Query: 341 -----------------VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
                            +    + F EMI    +P  +   T +  L+     E AI+I 
Sbjct: 441 NAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKIL 500

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKKA 439
             + + G+ P     N +++G    G++ + + +  EM+ +     +  Y   +H   +A
Sbjct: 501 GVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRA 560

Query: 440 FYNES--RSMRDIFDS 453
              ++  RS  ++ DS
Sbjct: 561 GEMQAAERSFIEMLDS 576



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 145/339 (42%), Gaps = 15/339 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +  ++  L K G  +  +     M + G+  ++ T+ ++ +  C  G+  +A   FD 
Sbjct: 653 FTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDG 712

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           +   G+ ++ V  +++++  C+  N T  A +  + +K + V PD   +  L++G  K G
Sbjct: 713 IPEKGLARNSVTYSTIIAGYCKSANLT-EAFQLFHGMKLVGVPPDSFVYCALIDGCCKAG 771

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N E+A   F  MVE          A+   +    +  ++ EA + +  M   +  P    
Sbjct: 772 NTEKALSLFLGMVEE---GIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVT 828

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  ++    + +   A QL+ + M      P+ LTY  +     +  R  E+   F EM
Sbjct: 829 YTILIEYHCTVGNIKEAEQLF-MEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEM 887

Query: 352 IKNEWQPTPLNCATAITMLLDADEPE----IAIEIWNYILENGILPLEASANELLVGLRN 407
           +    +P  L    A ++++DA   E     A+++ + +L  G+   +     L+  L  
Sbjct: 888 VARGIKPDDL----AWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCK 943

Query: 408 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446
              LS+V +  +E+  +   +   T   L   F+   R+
Sbjct: 944 HNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRT 982



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 99/241 (41%), Gaps = 3/241 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           + +  ++D   K G  E+  +    M E+G+ S P F ++ D +   GK  EA    + M
Sbjct: 758 FVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDM 817

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             + +  + V    L+   C   N       F+   K+ V P+  ++  LL G+ + G  
Sbjct: 818 VDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRR 877

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            E    F EMV R    P+  LA+   +   ++     +ALK +  M  E        ++
Sbjct: 878 SEMFSLFDEMVAR-GIKPDD-LAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYT 935

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D L K N+ +  +++ D  +   G+     T   +  C  +  R  E  +    M++
Sbjct: 936 ILIDALCKHNNLSEVLKVLD-EVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESMVR 994

Query: 354 N 354
           +
Sbjct: 995 S 995


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 143/330 (43%), Gaps = 7/330 (2%)

Query: 116 WNLMVDVLGKNGR-FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK-YDEAVMSFDVM 173
           +N++++V GK G  + ++ + V  MK DG+       +   + C  G  + EA   F+ M
Sbjct: 246 YNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEM 305

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
              G   D V  N+LL  +  + ++   A++ LN  V     P   ++  L+  + ++G 
Sbjct: 306 KAAGFSYDKVTYNALLD-VYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGM 364

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA +   +M E+       V  Y T L    R  +V+ A+     M+   C P +  F
Sbjct: 365 LDEAMELKNQMAEK--GTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTF 422

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  + +       T  ++++D + V  G  PD +T+N +     +N    EV   F EM 
Sbjct: 423 NAFIKMYGNRGKFTEMMKIFDEINVC-GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 481

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +  + P      T I+        E A+ ++  +L+ G+ P  ++ N +L  L   G   
Sbjct: 482 RAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWE 541

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
              +   EM + R    E+T   L  A+ N
Sbjct: 542 QSEKVLAEMEDGRCKPNELTYCSLLHAYAN 571



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 146/351 (41%), Gaps = 41/351 (11%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAV 167
           LSP    WN ++ V G+NG   ++    + MK  G V    TF ++  +Y   G +++A+
Sbjct: 450 LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM 509

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFL--NRVK------------- 210
             +  M   GV  D+   N++L+A+ R     Q+ + L  +   R K             
Sbjct: 510 TVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAY 569

Query: 211 ------------------KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
                              +++P       L+    K   + EA + F E+ ER  ++P+
Sbjct: 570 ANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKER-GFSPD 628

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            +    + +    R + V +A   L  MK     P++  +++ + +  +  D   + ++ 
Sbjct: 629 -ITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEIL 687

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
             ++   G  PD ++YN +     +N R+ +  + F EM  +   P  +   T I     
Sbjct: 688 REILA-KGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAA 746

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
               E AI +  Y++++G  P + + N ++ G   L R  + + F E++ N
Sbjct: 747 DSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRN 797



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 129/307 (42%), Gaps = 7/307 (2%)

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           +++ +LGK GR     N    ++EDG  L + ++ S+  ++  +G+Y EAV  F  M   
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEED 237

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEE 235
           G +  ++  N +L+   +     ++    + ++K   + PD  ++  L+   ++    +E
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297

Query: 236 ANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           A + F EM    F ++    + Y   L    +  +  EA+K L  M      P++  +++
Sbjct: 298 AAQVFEEMKAAGFSYDK---VTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNS 354

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +    +      A++L +  M   G  PD  TY  +     +  +V      F EM   
Sbjct: 355 LISAYARDGMLDEAMELKN-QMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNA 413

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
             +P        I M  +  +    ++I++ I   G+ P   + N LL      G  S+V
Sbjct: 414 GCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEV 473

Query: 415 RRFAEEM 421
               +EM
Sbjct: 474 SGVFKEM 480



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/315 (20%), Positives = 121/315 (38%), Gaps = 43/315 (13%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N ++    +    ++       MK  G      T+ ++ D Y  + +  EA+   + 
Sbjct: 280 YTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNE 339

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M ++G    +V  NSL+SA  R +     A+E  N++ +K   PD  ++  LL G+E+ G
Sbjct: 340 MVLNGFSPSIVTYNSLISAYAR-DGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAG 398

Query: 232 NVEEA----------------------------NKTFGEMVERFE------WNPEHVLAY 257
            VE A                               F EM++ F+       +P+ ++ +
Sbjct: 399 KVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPD-IVTW 457

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
            T L    +     E     + MK     P  + F+  +    +      A+ ++  M+ 
Sbjct: 458 NTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLD 517

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE-- 375
             G  PD  TYN +   L +     + EK   EM     +P  L   + +    +  E  
Sbjct: 518 -AGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIG 576

Query: 376 --PEIAIEIWNYILE 388
               +A E+++ ++E
Sbjct: 577 LMHSLAEEVYSGVIE 591



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 123/299 (41%), Gaps = 9/299 (3%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVV--AVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGD 218
           K+D A+ +FD        Q ++  +V +++ ++  +E + S A    N +++     D  
Sbjct: 150 KFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVY 209

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQVDEALKFL 277
           S+  L+  +   G   EA   F +M E  +     ++ Y   L    + G   ++    +
Sbjct: 210 SYTSLISAFANSGRYREAVNVFKKMEE--DGCKPTLITYNVILNVFGKMGTPWNKITSLV 267

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             MK +   P    ++  +    + +    A Q+++ M     ++ D +TYN + +   K
Sbjct: 268 EKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSY-DKVTYNALLDVYGK 326

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
           + R  E  K  +EM+ N + P+ +   + I+        + A+E+ N + E G  P   +
Sbjct: 327 SHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFT 386

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 454
              LL G    G++       EEM N        T +   K + N  +   M  IFD +
Sbjct: 387 YTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEI 445


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 150/339 (44%), Gaps = 7/339 (2%)

Query: 101 FFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYC 158
           FF+  G  G + S + +N+M+D L K G  E   +    MKE G    + T+ S+ D + 
Sbjct: 242 FFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHG 301

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDG 217
             G  DE +  F+ M     + DV+  N+L++  C+ E +  +A EFL+ +K   + P+ 
Sbjct: 302 KLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFE-RMPKAFEFLHEMKANGLKPNV 360

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +++  ++ + KEG ++EA K F +M  R    P     Y + +    +   + EALK +
Sbjct: 361 VTYSTFIDAFCKEGMLQEAIKFFVDM-RRVALTPNE-FTYTSLIDANCKAGNLAEALKLV 418

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             +        +  ++  LD L +      A +++  M+   G  P+  TY  +    IK
Sbjct: 419 EEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLN-AGVAPNQETYTALVHGFIK 477

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
            K +   +    EM +   +P  L   T +  L +    E A  +   I E+GI      
Sbjct: 478 AKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVI 537

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
              L+      G+ ++     EEML+  ++  EVT   L
Sbjct: 538 YTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCAL 576



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 124/285 (43%), Gaps = 10/285 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ S+ D+ C AG   EA+   + +   G++ +VV   +LL  +C +         F   
Sbjct: 397 TYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAM 456

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +   V P+ +++  L+ G+ K   +E A     EM E+    P+ +L Y T L  L    
Sbjct: 457 LNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKC-IKPD-LLLYGTILWGLCNES 514

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +++EA   +  +K          ++  +D   K   +T A+ L + M+   G     +TY
Sbjct: 515 RLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDL-GLIATEVTY 573

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
             + + L K+  V E    F  M +   QP        +  L   +  E+A ++++ +L+
Sbjct: 574 CALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLD 633

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 433
            G++P + +   L+ G    G L       +E LN R  + E+ M
Sbjct: 634 KGMMPDKIAYTALIDGNMKHGNL-------QEALNLRDRMIEIGM 671



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 144/344 (41%), Gaps = 18/344 (5%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
           R   L+P  + +  ++D   K G   +    V  + + G+ L++ T+ ++ D  C  G+ 
Sbjct: 387 RRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRM 446

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
            EA   F  M   GV  +     +L+    + + +   A + L  +K K + PD   +  
Sbjct: 447 KEAEEVFRAMLNAGVAPNQETYTALVHGFIKAK-EMEYAKDILKEMKEKCIKPDLLLYGT 505

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +L G   E  +EEA    GE+ E    N   V+ Y T +    +  Q  EAL  L  M  
Sbjct: 506 ILWGLCNESRLEEAKLLIGEIKES-GINTNAVI-YTTLMDAYFKSGQATEALTLLEEMLD 563

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
                T   +   +D L K      A+  +  M    G  P+   Y  + + L KN    
Sbjct: 564 LGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEI-GLQPNVAVYTALVDGLCKNNCFE 622

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP----EIAIEIWNYILENGI-LPLEAS 397
             +K F EM+     P  +    A T L+D +      + A+ + + ++E G+ L L A 
Sbjct: 623 VAKKLFDEMLDKGMMPDKI----AYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAY 678

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
              L+ GL + G++   R   +EM+ + +L  EV    L K +Y
Sbjct: 679 -TALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYY 721



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 153/388 (39%), Gaps = 34/388 (8%)

Query: 98  AVDFFRWA-GR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAV--------RVMKEDGVLSL 147
           A+ FF WA GR G + +  A+ ++V +L    RF    NAV        RV+    V  L
Sbjct: 115 ALRFFEWAKGRIGFQHTSEAYCILVHIL-FCARFYSDANAVLKELICLRRVLPSWDVFDL 173

Query: 148 ------------PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR- 194
                         F ++F +    G  +EA   F  M    V     + N+LL  + + 
Sbjct: 174 LWATRNVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKV 233

Query: 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
                SR   F +     +     ++ I+++   KEG++E A   F +M E   + P+ +
Sbjct: 234 GRGDLSRKF-FKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEA-GFTPD-I 290

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           + Y + +    +   +DE +     MK  +C P +  ++  ++   K      A +    
Sbjct: 291 VTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHE 350

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
           M   +G  P+ +TY+   +   K   + E  KFF +M +    P      + I     A 
Sbjct: 351 MKA-NGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAG 409

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL----IYE 430
               A+++   IL+ GI     +   LL GL   GR+ +       MLN  +      Y 
Sbjct: 410 NLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYT 469

Query: 431 VTMHKLKKAFYNESRSMRDIFDSLERRC 458
             +H   KA   E    +DI   ++ +C
Sbjct: 470 ALVHGFIKA--KEMEYAKDILKEMKEKC 495


>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
          Length = 655

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/403 (21%), Positives = 154/403 (38%), Gaps = 39/403 (9%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLM 119
           H+    +E AL  +G+     L   VL    D+ +    FF WA +  G R S   +  M
Sbjct: 102 HSRVPKLELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAM 161

Query: 120 VDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           + +LGK  +F  +W  +  M+ +    +S   F  +   +  A    +A+   D M  +G
Sbjct: 162 IKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMPKYG 221

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
            E D      LL A+C+       A      ++    P    F  LL GW +EG + EA 
Sbjct: 222 CEPDEHVFGCLLDALCKN-GSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAK 280

Query: 238 KTF-------------------------GEMVERFEWNPE--------HVLAYETFLITL 264
                                       G+MV+ ++   E        +V+++ T +  L
Sbjct: 281 YVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQAL 340

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
              K+++EA++    M+   C      ++  +    K    +   +L D  M+  G  P+
Sbjct: 341 CAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLD-NMIQQGHIPN 399

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TY  I     K + + E  +   EM K    P        I +     E +  + +WN
Sbjct: 400 PMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWN 459

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
            +   G+ P   +   ++ G  +   L +   F +EM+ R +L
Sbjct: 460 EMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLL 502


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 153/343 (44%), Gaps = 9/343 (2%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G  LSP A  +N +++   + G   +    +  MK DG+  + PT+ ++  ++   G  
Sbjct: 235 QGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWI 294

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--PDGDSFA 221
            +A    + M+ +G E D+   N L   +C Q  +   A    + ++++    PD  ++ 
Sbjct: 295 KQATKVVESMTAYGFEPDLRTYNVLAVGLC-QAGKVDEAFRLKDEMERLSTALPDVVTYN 353

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++   K     +A +   EM  R +     ++ +   + +L +  +++EAL  L  + 
Sbjct: 354 TLVDACFKWRCSSDALRLLEEM--RDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIA 411

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            E   P +  ++  +D   K  +   A  L D  MV  G   D+ T N +   L K KR 
Sbjct: 412 EEGLAPDVITYNTLIDAYCKAGNVAKAFTLMD-EMVGKGLKMDTFTLNTVLYNLCKMKRY 470

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            + E+  H   +  + P  ++  T +        PE A+ +W+ ++E  ++P  ++ N L
Sbjct: 471 EDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTL 530

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           + GL  + RL +      E++ + ++  E T + +  A+  E 
Sbjct: 531 IKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEG 573



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 152/361 (42%), Gaps = 45/361 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +    N++V  L K G+ E+    +  + E+G+   + T+ ++ D+YC AG   +
Sbjct: 378 KGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAK 437

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    D M   G++ D   +N++L  +C+ +          +  ++   PD  S+  ++ 
Sbjct: 438 AFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMA 497

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + KE N E A + + +M+ER +  P  +  Y T +  L R +++ EA+           
Sbjct: 498 AYFKEYNPEPALRLWDQMIER-KLIPS-ISTYNTLIKGLCRMERLKEAID---------- 545

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
                          KLN+           +V  G  PD  TYN+I     K   +    
Sbjct: 546 ---------------KLNE-----------LVEKGLVPDETTYNIIIHAYCKEGDLENAF 579

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           +F ++M++N ++P  + C T +  L    + + A++++   +E G      + N L+  +
Sbjct: 580 RFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSM 639

Query: 406 RNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTS 461
             +G +     F ++M    L      Y V +  L +A    S    ++   L    K S
Sbjct: 640 CKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEA--GRSEEAHNMLHKLADSGKLS 697

Query: 462 Q 462
           Q
Sbjct: 698 Q 698



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 105/234 (44%), Gaps = 19/234 (8%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++    K G  E  +     M E+     + T  ++ +  C  GK D+A+  F+   
Sbjct: 562 YNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWV 621

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G + DV+  N+L+ ++C+       AL F + ++ K + PD  ++ ++L    + G  
Sbjct: 622 EKGKKVDVITYNTLIQSMCKV-GDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRS 680

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFF 292
           EEA+    ++ +  + +       ++F   L++    DEA   ++  +G+     + K  
Sbjct: 681 EEAHNMLHKLADSGKLS-------QSFACPLLKPSSADEA--DVKEHEGKPEAESSEKAQ 731

Query: 293 SNALDILV-KLNDSTHAVQLWDIMMVF-----HGAFPDSLTYNMIFECLIKNKR 340
            NAL+  + +LN      QL +   V       G   DS TY  + E LIK ++
Sbjct: 732 DNALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGLIKRQK 785


>gi|356557957|ref|XP_003547276.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g43820-like [Glycine max]
          Length = 505

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 138/307 (44%), Gaps = 5/307 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++++V  LG+   F+ M +A+  M+ + +   L   + + DS+  AG    A+  F  + 
Sbjct: 113 YHVIVKALGRRKFFDFMMDALCDMRRNAIDGDLFMLSVVVDSFVRAGHVSRAIQVFGNLD 172

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             GV +D  A+N LL  +CR+ +    A   LN +K  VD D  ++  +  GW + G V 
Sbjct: 173 DLGVRRDTEALNVLLLCLCRR-SHVGAANSVLNSMKGKVDFDVGTYNAVAGGWSRFGRVS 231

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           E  +   EM E     P+    +   +  L R  ++DEA++ L  MK  NC P  + ++ 
Sbjct: 232 EVERVMREM-EADGLRPD-CRTFGFLIEGLGREGRMDEAVEILCGMKEMNCQPDTETYNA 289

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +   V + D    ++ ++ M+      P+  TY  +    ++ ++V +    F EM++ 
Sbjct: 290 VIFNFVSVGDFEECIKYYNRMLS-DNCEPNLDTYARMINRFLRARKVADALLMFDEMLRR 348

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
              P+     T I  L     P  A+ I+    + G +    +   LL+ L  +G+   +
Sbjct: 349 GVVPSTGTITTFIKRLCSYGPPYAALMIYKKARKLGCVISMEAYKILLMRLSMVGKCGTL 408

Query: 415 RRFAEEM 421
               EEM
Sbjct: 409 LSIWEEM 415


>gi|255660932|gb|ACU25635.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 484

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 134/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  + +S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHGAKNS-EHALQFFRWVERSNLFQHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + ++L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVLMIDSYGNGGIVQESVKLFQKMDELGVERTIKSYDALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F I++ G+   G VE AN+ F +M  R E  P
Sbjct: 125 ISRRGRYMMAKRYFNKMLSEGIEPTRHTFNIMIWGFFLSGKVETANRFFEDMKNR-EITP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  + G   +++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGY-GIKANAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPT 289



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 11/226 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ +   G V+E+ K F +M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDEDMWVLMIDSYGNGGIVQESVKLFQKMDELGVER------TIKSYDAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              + R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVISRRGRYMMAKRYFNKMLSEGIEPTRHTF-NIMIWGFFLSGKVETANRFFEDMKNRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            +   +   GI     + + LL GL N  ++S+ R   +EM+++ I
Sbjct: 241 RLVEEMKGYGIKANAITYSTLLPGLCNAEKMSEARSILKEMVDKYI 286



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 102/260 (39%), Gaps = 35/260 (13%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ T+ ++   Y    + D+A+   + M  +G++ + +  ++LL  +C  E  +      
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKANAITYSTLLPGLCNAEKMSEARSIL 278

Query: 206 LNRVKKIVDPDGDS-FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
              V K + P  +S F  L+ G  K GN++ A      M+ R    P     Y   +   
Sbjct: 279 KEMVDKYIAPTDNSIFMRLISGQCKAGNLDAAADVLKAMI-RLSV-PTEAGHYGVLIENY 336

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            +  Q D+A+K L  +  +             DI+++   + H                +
Sbjct: 337 CKAGQYDQAVKLLDKLIEK-------------DIILRPQSTLHM---------------E 368

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIW 383
           S  YN +   L  N +  + E    +++K   Q PT LN  T I        P+ A E+ 
Sbjct: 369 SSAYNPLIGYLCNNGQTAKAEALVRQLMKLGVQDPTALN--TLIRGHSQEGSPDSAFELL 426

Query: 384 NYILENGILPLEASANELLV 403
             +L   +   E SA + LV
Sbjct: 427 KIMLRRKV-DSEKSAYDSLV 445


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 151/344 (43%), Gaps = 14/344 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE---DGVL-SLPTFASIFDSYCGAGK 162
           RG   +   +N ++D   K G+  +M+ A  ++KE   DG+  +  TF  + D +C    
Sbjct: 192 RGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKN 251

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFA 221
              A+  F  M+  GV+ +VV  NSL++ +C    + + A    ++ V   + P+  +  
Sbjct: 252 VSAAMKVFAEMNRQGVKPNVVTYNSLINGLC-NNGKVNEATALRDQMVNSCLKPNIITHN 310

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            LL G+ K   V++A + F +M +  +    +V  Y   +    + + +++A    R+M 
Sbjct: 311 ALLNGFCKNKMVKQAGELFDDMPK--QGITPNVTTYNILIDAYCKDENMEDAFALYRIML 368

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
           G+   P +  ++  +  L +  D   A  L   M   H    D +TYN++ + L     +
Sbjct: 369 GKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKH-LKADLITYNILIDSLCNKGEM 427

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            +  +   EM +   +P+ L   T I           A+ + + + + G L   A+ N L
Sbjct: 428 KKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVL 487

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRI----LIYE-VTMHKLKKAF 440
           + G     +L D      EML + +    + YE VT   ++K F
Sbjct: 488 IKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGF 531



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 9/343 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           +R+ P   ++N++++ L K G+  +  + +  MK  GV  ++ T+ ++ D YC  GK  +
Sbjct: 157 RRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGK 216

Query: 166 AVMSFDV---MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
              +  +   M   G+  + V  N L+   C+ +N ++    F    ++ V P+  ++  
Sbjct: 217 MYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNS 276

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G    G V EA     +MV      P +++ +   L    + K V +A +    M  
Sbjct: 277 LINGLCNNGKVNEATALRDQMVNSC-LKP-NIITHNALLNGFCKNKMVKQAGELFDDMPK 334

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +   P +  ++  +D   K  +   A  L+ IM+   G  PD  TYN +   L +   + 
Sbjct: 335 QGITPNVTTYNILIDAYCKDENMEDAFALYRIML-GKGVCPDVSTYNCLIAGLCRKGDLE 393

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
                  EM     +   +     I  L +  E + A+ + + +   G+ P + + N ++
Sbjct: 394 AARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMI 453

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            G    G L        +M     L    T + L K F  + +
Sbjct: 454 DGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDK 496



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 150/367 (40%), Gaps = 51/367 (13%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F R +  G +LS  + N ++  L K G    M    + M    +  +L +F  + +  C 
Sbjct: 116 FKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCK 175

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKK-IVDPD 216
            GK ++A    + M + GV  +V+  N+L+   C+  +  +  +A   L  ++   + P+
Sbjct: 176 VGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPN 235

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +F IL++G+ K+ NV  A K F EM  R    P +V+ Y + +  L    +V+EA   
Sbjct: 236 EVTFNILIDGFCKDKNVSAAMKVFAEM-NRQGVKP-NVVTYNSLINGLCNNGKVNEA--- 290

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
                                    L D           MV     P+ +T+N +     
Sbjct: 291 -----------------------TALRDQ----------MVNSCLKPNIITHNALLNGFC 317

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA----DEPEIAIEIWNYILENGIL 392
           KNK V +  + F +M K    P      T   +L+DA    +  E A  ++  +L  G+ 
Sbjct: 318 KNKMVKQAGELFDDMPKQGITPN----VTTYNILIDAYCKDENMEDAFALYRIMLGKGVC 373

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFD 452
           P  ++ N L+ GL   G L   R    EM  + +    +T + L  +  N+   M+    
Sbjct: 374 PDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGE-MKKALR 432

Query: 453 SLERRCK 459
            L+  C+
Sbjct: 433 LLDEMCR 439



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 116/269 (43%), Gaps = 7/269 (2%)

Query: 96  SSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFAS 152
           S+A+  F    R G + +   +N +++ L  NG+  +   A+R    +  L  ++ T  +
Sbjct: 253 SAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNE-ATALRDQMVNSCLKPNIITHNA 311

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + + +C      +A   FD M   G+  +V   N L+ A C+ EN       +   + K 
Sbjct: 312 LLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKG 371

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V PD  ++  L+ G  ++G++E A     EM  +       ++ Y   + +L    ++ +
Sbjct: 372 VCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHL--KADLITYNILIDSLCNKGEMKK 429

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           AL+ L  M  +   P+   ++  +D   K  +   A+ L   M    G   +  TYN++ 
Sbjct: 430 ALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKV-GRLANVATYNVLI 488

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
           +   K  ++ +     +EM++    P  +
Sbjct: 489 KGFCKKDKLEDANGLLNEMLEKGLIPNRM 517


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 154/369 (41%), Gaps = 41/369 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   ++ ++  L K    ++    +  M ++GV+ +  T+ SI   YC +G+  E
Sbjct: 228 RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE 287

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     M   GVE DVV  NSL+  +C+    T     F +  K+ + P+  ++  LL+
Sbjct: 288 AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    +  +VD+A+     M+ +  
Sbjct: 348 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 286 FPTLKFFSNALDILVK-------------------------LNDSTHAVQLWD------- 313
            P    +   + IL K                          N   H++ ++D       
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKE 465

Query: 314 --IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
             + M+  G   D++ +N I +   K  RV E EK F  M++   +P  +  +T I    
Sbjct: 466 LILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 525

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRIL 427
            A + + A ++   ++  G+ P   + N L+ G   + R+ D      EM    ++  I+
Sbjct: 526 LAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585

Query: 428 IYEVTMHKL 436
            Y + +  L
Sbjct: 586 TYNIILQGL 594



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/413 (20%), Positives = 158/413 (38%), Gaps = 89/413 (21%)

Query: 107 RGQRLSPYAWNLMVDVLGKNG------RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           RG+  S Y  N  +  + ++       R+ +M    R   ++   +L T+  +  S C A
Sbjct: 48  RGRGASIYGLNCALADVARHSPAAAVSRYNRM---ARAGADEVTPNLCTYGILIGSCCCA 104

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR-------------------------- 194
           G+ D    +   +   G   D +A   LL  +C                           
Sbjct: 105 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFS 164

Query: 195 ---------QENQTSRALEFLNRV---KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
                     EN++  ALE L  +        PD  S+  ++ G+ KEG++++A  T+ E
Sbjct: 165 YNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHE 224

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M++R      +V+ Y + +  L + + +D+A++ L  M      P  + +++ +      
Sbjct: 225 MLDRGIL--PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                A+     M    G  PD +TYN + + L KN R  E  K F  M K   +P    
Sbjct: 283 GQPKEAIGFLKKMHS-DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT 341

Query: 363 CATAIT------------MLLD---------------------ADEPEI--AIEIWNYIL 387
             T +              LLD                     A + ++  A+ +++ + 
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMR 401

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKL 436
           + G+ P   +   ++  L   GR+ D  R+ E+M++ R+    ++Y   +H L
Sbjct: 402 QQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL 454



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/349 (19%), Positives = 148/349 (42%), Gaps = 10/349 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N+++  L    R ++    +++M +DG    P   ++ ++ + +   G  D+A  ++
Sbjct: 163 FSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTY 222

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  +VV  +S+++A+C+ +    +A+E L   VK  V P+  ++  ++ G+  
Sbjct: 223 HEMLDRGILPNVVTYSSIIAALCKAQ-AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCS 281

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G  +EA     +M    +     V+ Y + +  L +  +  EA K    M      P +
Sbjct: 282 SGQPKEAIGFLKKM--HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEI 339

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             +   L              L D +MV +G  P+   ++++     K  +V +    F 
Sbjct: 340 TTYGTLLQGYATKGALVEMHGLLD-LMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFS 398

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           +M +    P  +   T I +L  +   E A+  +  +++  + P     N L+  L    
Sbjct: 399 KMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFD 458

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD--IFDSLER 456
           +    +    EML+R I +  +  + +  +   E R +    +FD + R
Sbjct: 459 KWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVR 507



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 117/288 (40%), Gaps = 41/288 (14%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           +RLSP    +N ++  L    ++++    +  M + G+ L    F SI DS+C  G+  E
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE 497

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           +   FD+M   GV+ D++                                   +++ L++
Sbjct: 498 SEKLFDLMVRIGVKPDII-----------------------------------TYSTLID 522

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+   G ++EA K    MV      P+ V  Y T +    +  ++++AL   R M+    
Sbjct: 523 GYCLAGKMDEATKLLASMVS-VGMKPDCV-TYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P +  ++  L  L +   +  A +L+ + +   G   +  TYN+I   L KN    E  
Sbjct: 581 SPDIITYNIILQGLFQTRRTAAAKELY-VGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           + F  +   + Q         I  LL     + A +++  +  NG++P
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687


>gi|255562047|ref|XP_002522032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538836|gb|EEF40436.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 451

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 131/285 (45%), Gaps = 8/285 (2%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           T +LV  VL+    SP+ ++ FF W+      +   +  ++ +L K+ R+  MW  +  M
Sbjct: 69  TSELVFRVLRACSRSPTESLRFFNWSRAYYTPTSIEYEELIKILAKSKRYSSMWKLITQM 128

Query: 140 KEDG---VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           K+      +S  T  SI + Y  +G  D+AV  F+  +    EQ+V   NSLL A+C + 
Sbjct: 129 KDQNPQFSISSETVRSIIEEYGRSGLIDQAVEVFNQCNSLNCEQNVDIYNSLLFALC-EV 187

Query: 197 NQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                A   + R ++K + P+  ++++L+ GW   G  +EA     EM ++  +NP  V 
Sbjct: 188 KLFHGAYALVRRLIRKGLAPNKTTYSVLVNGWCSNGKFKEAQLFLEEMSKK-GFNPP-VR 245

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
             +  +  L+     + A + +  M  E   P +  F+  ++ +    +    V ++  +
Sbjct: 246 GRDLLIEGLLNAGYFESAKEMVFKMSKEGFVPDVNTFNCLIEAICNSGEVDFCVDMYYSL 305

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
               G  PD  +Y ++   + K  ++ E  K  +  I++  +P P
Sbjct: 306 RKL-GFCPDINSYKILIPAVSKVGKIDEAFKLLNNSIEDGHKPFP 349


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/337 (19%), Positives = 151/337 (44%), Gaps = 8/337 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDE 165
           +G ++  Y  +++++ L K+G+  +    ++ +   G+L     + ++ + YC  G  + 
Sbjct: 322 KGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEG 381

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   F  M    +  D +  N+L++ + + E  T      +   K  V+P  ++F  L++
Sbjct: 382 AFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLID 441

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + + G +E+      +M E+    P +V++Y + +    +  ++ EA+  L  M  ++ 
Sbjct: 442 AYGRAGQLEKCFIILSDMQEK-GLKP-NVVSYGSIVNAFCKNGKILEAVAILDDMFIKDV 499

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P  + ++  +D  ++   +  A  L +  M   G  P  +TYN++ + L K  ++ E E
Sbjct: 500 LPGAQVYNAIIDAYIECGSTDQAFMLAE-KMKSSGVPPSIVTYNLLIKGLCKQSQISEAE 558

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           +    +      P  ++  T I+        + A+E+   + + GI P   +   L   L
Sbjct: 559 ELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSL 618

Query: 406 RNLGRLSDVRRFAEEMLNRRIL----IYEVTMHKLKK 438
              GR+ ++    ++ML++ ++    IY + +    K
Sbjct: 619 GGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAK 655



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 137/335 (40%), Gaps = 10/335 (2%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           AV   R  G     +P  +++N+++  L K G           M E  V+ +  T+ ++ 
Sbjct: 171 AVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMI 230

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           D +   G  +     +  M  HG++ +V+  N LLS +CR       A        + + 
Sbjct: 231 DGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMV 290

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY--ETFLITLIRGKQVDE 272
           PDG +++IL +G  + G+ +     F E V++       + AY     L  L +  ++ +
Sbjct: 291 PDGFTYSILFDGHSRTGDSQTMLSLFEESVKK----GVKIGAYTCSILLNGLCKDGKISK 346

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A + L+ +       T   ++  ++   ++ D   A  ++   M      PD +TYN + 
Sbjct: 347 AEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQ-QMKSRLIRPDHITYNALI 405

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
             L K +R+ E      EM KN   P+     T I     A + E    I + + E G+ 
Sbjct: 406 NGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLK 465

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           P   S   ++      G++ +     ++M  + +L
Sbjct: 466 PNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVL 500



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/278 (19%), Positives = 106/278 (38%), Gaps = 6/278 (2%)

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK--KIVDPDGD 218
           G++ +   +F+++       D    N  + A C        A+  L R+       P+  
Sbjct: 131 GRHADVRGAFELLVAARARPDTFTWNKAVQA-CVVAGDLDEAVGMLRRMGCDGAPAPNAF 189

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+ +++ G  K G   +A K F EM E+    P H+  Y T +   I+   ++   +   
Sbjct: 190 SYNVVIAGLWKAGTDCDAVKLFDEMPEK-AVVPNHI-TYNTMIDGHIKKGDLESGFRLWS 247

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M      P +  ++  L  L +         + D  M      PD  TY+++F+   + 
Sbjct: 248 QMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLD-EMASRKMVPDGFTYSILFDGHSRT 306

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
                +   F E +K   +     C+  +  L    +   A E+   ++ +G+L      
Sbjct: 307 GDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIY 366

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           N L+ G   +G L       ++M +R I    +T + L
Sbjct: 367 NTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNAL 404


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 145/333 (43%), Gaps = 6/333 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+M++ L +  +       + ++MK     S+ T  S+ + +C   +  EAV   D 
Sbjct: 101 YTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQ 160

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           M   G + D V   +L+  +  Q N+ S A+  + R V K   PD  ++  ++ G  K G
Sbjct: 161 MVEMGYQPDTVTFTTLVHGL-FQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRG 219

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             + A     +M E+ +   + V+ Y T + +L + + VD+AL     M  +   P +  
Sbjct: 220 EPDLALNLLNKM-EKGKIEAD-VVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFT 277

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S+ +  L      + A +L   M+      P+ +T+N + +   K  ++ E EK F EM
Sbjct: 278 YSSLISCLCNYGRWSDASRLLSDMLE-RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEM 336

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           I+    P  +   + I      D  + A +I+  ++    LP   + N L+ G     ++
Sbjct: 337 IQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKV 396

Query: 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            D      +M  R ++   VT   L   F+  S
Sbjct: 397 VDGMELFRDMSRRGLVGNTVTYTTLIHGFFQAS 429



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/333 (20%), Positives = 153/333 (45%), Gaps = 7/333 (2%)

Query: 83  LVHEVLQLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           LVH + Q  ++  S AV    R   +G +     +  +++ L K G  +   N +  M++
Sbjct: 176 LVHGLFQ--HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEK 233

Query: 142 DGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
             +   +  ++++ DS C     D+A+  F  M   G+  DV   +SL+S +C     + 
Sbjct: 234 GKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSD 293

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
            +    + +++ ++P+  +F  L++ + KEG + EA K F EM++R   +P +++ Y + 
Sbjct: 294 ASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR-SIDP-NIVTYNSL 351

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +       ++DEA +   +M  ++C P +  ++  ++   K       ++L+  M    G
Sbjct: 352 INGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSR-RG 410

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
              +++TY  +     +       +  F +M+ +   P  +   T +  L    + E A+
Sbjct: 411 LVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAM 470

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSD 413
            ++ Y+ ++ + P   + N +  G+   G++ D
Sbjct: 471 VVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVED 503



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 130/302 (43%), Gaps = 7/302 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F+ +  +     K+D  +   + M + GV  ++   N +++ +CR+ +Q S AL  
Sbjct: 64  SIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRR-SQLSFALAI 122

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+   P   +   LL G+     + EA     +MVE   + P+ V  + T +  L
Sbjct: 123 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE-MGYQPDTV-TFTTLVHGL 180

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-P 323
            +  +  EA+  +  M  + C P L  +   ++ L K  +   A+ L + M    G    
Sbjct: 181 FQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKME--KGKIEA 238

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D + Y+ + + L K + V +    F EM     +P     ++ I+ L +      A  + 
Sbjct: 239 DVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLL 298

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
           + +LE  I P   + N L+      G+L +  +  +EM+ R I    VT + L   F   
Sbjct: 299 SDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 358

Query: 444 SR 445
            R
Sbjct: 359 DR 360



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 124/303 (40%), Gaps = 4/303 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F     +G R   + ++ ++  L   GR+      +  M E  +  ++ TF S+ D++  
Sbjct: 263 FTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAK 322

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            GK  EA   FD M    ++ ++V  NSL++  C  +        F   V K   PD  +
Sbjct: 323 EGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVT 382

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  L+ G+ K   V +  + F +M  R      + + Y T +    +    D A    + 
Sbjct: 383 YNTLINGFCKAKKVVDGMELFRDMSRRGLVG--NTVTYTTLIHGFFQASDCDNAQMVFKQ 440

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M  +   P +  ++  LD L K      A+ +++ +       PD  TYN++ E + K  
Sbjct: 441 MVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQK-SKMEPDIYTYNIMSEGMCKAG 499

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           +V +    F  +     +P  +   T I+        E A  ++  + E+G LP   + N
Sbjct: 500 KVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYN 559

Query: 400 ELL 402
            L+
Sbjct: 560 TLI 562



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 77/162 (47%), Gaps = 2/162 (1%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+H   Q S D  ++ + F +    G   +   +N ++D L KNG+ E+       +++ 
Sbjct: 421 LIHGFFQAS-DCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKS 479

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
            +   + T+  + +  C AGK ++    F  +S+ GV+ DV+A N+++S  C++  +   
Sbjct: 480 KMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEA 539

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
              F+   +    PD  ++  L+    ++G+   + +   EM
Sbjct: 540 YTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEM 581



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 45/238 (18%), Positives = 100/238 (42%), Gaps = 4/238 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +++    + R ++      +M  +D +  + T+ ++ + +C A K  + +  F  M
Sbjct: 347 TYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDM 406

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           S  G+  + V   +L+    +  +  +  + F   V   V P+  ++  LL+G  K G +
Sbjct: 407 SRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKL 466

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E+A   F E +++ +  P+ +  Y      + +  +V++       +  +   P +  ++
Sbjct: 467 EKAMVVF-EYLQKSKMEPD-IYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYN 524

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
             +    K      A  L+ I M   G  PDS TYN +    +++       +   EM
Sbjct: 525 TMISGFCKKGLKEEAYTLF-IKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEM 581


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 123/279 (44%), Gaps = 6/279 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF +     C  G  ++A+M  + M  HG    VV  N+L++  C Q +  S ALE    
Sbjct: 389 TFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDS-ALELFRS 447

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +     P+  ++  LL G      ++ A +   EM+ R    P +V+ +   +    +  
Sbjct: 448 MP--CKPNTITYTTLLTGLCNAERLDAAAELVAEMLHR--DCPPNVVTFNVLVNFFCQKG 503

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            +DEA++ +  M    C P L  ++   D + K   S  A++L    +V  G  PD +T+
Sbjct: 504 FLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLH-GLVSKGVSPDVITF 562

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           + I   L K  RV E  + FH       +P  L     +  L    E + AI+   Y++ 
Sbjct: 563 SSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVS 622

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           NG +P E++   L+ GL   G L + +     + +R ++
Sbjct: 623 NGCMPNESTYIILIEGLAREGLLKEAQDLLSMLCSRGVV 661



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 139/322 (43%), Gaps = 34/322 (10%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASI-FDSYCGAGKYDEAVMSFDVMS 174
           +++++    + G  E+    ++ M E    +  T  +I  +S C  G+ D+A    + M 
Sbjct: 285 FDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMG 344

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
            +G   D ++  ++L  +CR E + + A E L   V+    P+  +F   +    ++G +
Sbjct: 345 SYGCNPDTISYTTVLKGLCRAE-RWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLI 403

Query: 234 EEANKTFGEM----------------------------VERFEWNP--EHVLAYETFLIT 263
           E+A     +M                            +E F   P   + + Y T L  
Sbjct: 404 EQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTG 463

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L   +++D A + +  M   +C P +  F+  ++   +      A++L + MM  HG  P
Sbjct: 464 LCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMME-HGCTP 522

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           + +TYN +F+ + K+    +  +  H ++     P  +  ++ I +L   D  E AI+++
Sbjct: 523 NLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMF 582

Query: 384 NYILENGILPLEASANELLVGL 405
           +   + G+ P     N++L+GL
Sbjct: 583 HLAQDIGMRPKALVYNKILLGL 604



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 142/349 (40%), Gaps = 22/349 (6%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG + +   + ++++ + KN  FEQ    +  M+  G   ++ T+  I +  C  G+ D+
Sbjct: 171 RGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDD 230

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    + +  +G + D V+  +LL  +C  +        F   ++K   P+  +F +L+ 
Sbjct: 231 ARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIR 290

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI-----RGKQVDEALKFLRVM 280
            + + G VE A +   +M        EH  A  T L  ++     +  +VD+A KFL  M
Sbjct: 291 FFCRGGMVERAIQVLQQMT-------EHECATNTTLCNIVINSICKQGRVDDAFKFLNNM 343

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
               C P    ++  L  L +      A +L    MV +   P+ +T+N     L +   
Sbjct: 344 GSYGCNPDTISYTTVLKGLCRAERWNDAKELLK-EMVRNNCPPNEVTFNTFICILCQKGL 402

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           + +      +M ++      +     +         + A+E++  +      P   +   
Sbjct: 403 IEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSM---PCKPNTITYTT 459

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL-----KKAFYNES 444
           LL GL N  RL        EML+R      VT + L     +K F +E+
Sbjct: 460 LLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEA 508



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 117/291 (40%), Gaps = 10/291 (3%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           +  + C  G+  +A          G   DV A N+L++  CR       A   +  +   
Sbjct: 81  LIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRY-GHLDAARRLIGSMP-- 137

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V PD  ++  L+      G V +A     +M+ R    P +V+ Y   L  + +    ++
Sbjct: 138 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRR-GCQP-NVVTYTVLLEAMCKNSGFEQ 195

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A+  L  M+ + C P +  ++  ++ + +      A  L + +  + G  PD+++Y  + 
Sbjct: 196 AMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSY-GCQPDTVSYTTLL 254

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
           + L  +KR  +VE+ F EM++    P  +     I         E AI++   + E+   
Sbjct: 255 KGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECA 314

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKA 439
                 N ++  +   GR+ D  +F   M     N   + Y   +  L +A
Sbjct: 315 TNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRA 365



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 81/215 (37%), Gaps = 7/215 (3%)

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
           +P  V AY T +    R   +D A + +  M      P    ++  + +L        A+
Sbjct: 106 SPVDVFAYNTLVAGYCRYGHLDAARRLIGSMPVA---PDAYTYTPLIRVLCDRGRVADAL 162

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
            L D M+   G  P+ +TY ++ E + KN    +      EM      P  +     I  
Sbjct: 163 SLLDDML-RRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIING 221

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
           +      + A ++ N +   G  P   S   LL GL    R  DV     EM+ +  +  
Sbjct: 222 MCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPN 281

Query: 430 EVTMHKLKKAFYNES---RSMRDIFDSLERRCKTS 461
           EVT   L + F       R+++ +    E  C T+
Sbjct: 282 EVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATN 316


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 168/393 (42%), Gaps = 22/393 (5%)

Query: 59  ILAHASSDDIESALACTGIIPTPD----------LVHEVLQLSYDSPSSAVDFF-RWAGR 107
           I+A+  S+ IE A+ C  ++   +          L+  V++L+   P    +F+      
Sbjct: 162 IIAYTDSEFIEDAIQCLRLVKKNNFSIPVCGCDYLLRRVMKLN-QQPGHCWEFYLEVLDY 220

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE---DGVL-SLPTFASIFDSYCGAGKY 163
           G   + Y +N+++    K G    + NA  V  E    G+  S+ +F ++   YC +   
Sbjct: 221 GYPPNVYLFNILMHGFCKIG---DVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNV 277

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           +E  +   VM    +  DV   ++L++ +C++         F    +  + P+G +F  L
Sbjct: 278 EEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTL 337

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G  K G ++ A + F  M +R    P+ ++ Y   +  L R   + EA K L  M G 
Sbjct: 338 IDGQCKHGKIDLALRNFEIMKDR-GIRPD-LITYNALINGLCRDGDLKEARKLLNEMIGN 395

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P    F+  +D   K  D   A+++ D  MV  G   D + +  +   L ++ RV +
Sbjct: 396 GFKPDKITFTTLMDGCCKDGDMDSALEIKD-RMVEEGIELDDVAFTALISGLCRDGRVRD 454

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
            E+   +M+    +P        I       + ++  ++   +  +G +P   + N L+ 
Sbjct: 455 AERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMN 514

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           G    G++ + +     MLN  ++  ++T + L
Sbjct: 515 GFCKQGQMKNAKMLLHAMLNMEVVPNDITFNIL 547



 Score = 45.1 bits (105), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 16/200 (8%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL------PTFASIFDS 156
           R    G  L   A+  ++  L ++GR     +A R++K+  +LS       PT+  + D 
Sbjct: 426 RMVEEGIELDDVAFTALISGLCRDGRVR---DAERMLKD--MLSAGHKPDDPTYTMVIDC 480

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
           +C  G           M   G    VV  N+L++  C+Q    +  +     +   V P+
Sbjct: 481 FCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPN 540

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +F ILL+G  K G+  +     GE     ++     L  E+  I+  + K V E    
Sbjct: 541 DITFNILLDGHCKHGSSVDFKIFNGEKGLVSDYASYTALVNESIKISKDQLKSVLECPTH 600

Query: 277 LRVMKGEN-----CFPTLKF 291
           + +   +N     C  +L+F
Sbjct: 601 IGIQYRQNTDMCSCIQSLQF 620


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 153/349 (43%), Gaps = 26/349 (7%)

Query: 112 SPYAW--NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVM 168
           SP  W  NL+V+ L K G        +      G +  + TF ++ D YC     D+A+ 
Sbjct: 423 SPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIE 482

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
             D M  HG+  DV+  N+LL+ +C+     +    F   ++K   P+  ++ IL+E + 
Sbjct: 483 ILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFC 542

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP- 287
           K+  V EA + F EM  R    P+ ++   T +  L    ++D+A +    ++ E  F  
Sbjct: 543 KDRKVSEAMELFKEMKTR-GLTPD-IVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSY 600

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
           +   F+  ++   +  + + A +L+  M     A PD+ TY ++ +   K   +     F
Sbjct: 601 STAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCA-PDNYTYRVMIDSYCKTGNIDLAHTF 659

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP------LEASANEL 401
             E I     P+   C   +  L        A+ I N +++NGI+P       EA   E+
Sbjct: 660 LLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEEVNSIFEADKKEV 719

Query: 402 L---VGLRNLGRLSDVRRFAEEML-----NRRI-----LIYEVTMHKLK 437
               + +  L + S +  ++ E+L     NR++     L+Y+V   K K
Sbjct: 720 AAPKIVVEYLLKKSHITYYSYELLYDGIRNRKVVEARPLLYKVAYQKAK 768



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 135/332 (40%), Gaps = 4/332 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++ VL K G  ++      +VMK     +L TF       C  G  DEA    + +
Sbjct: 218 TFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESI 277

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  DV++ N+L+   C+              V   V+P+  ++  ++ G+ K G +
Sbjct: 278 VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMM 337

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A+K   + +  F+        Y + +  L     ++ A+        +    ++  ++
Sbjct: 338 QNADKILRDAM--FKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYN 395

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +  L K      A+QL   MM  HG  PD  TYN++   L K   + +     ++ I 
Sbjct: 396 TLVKGLSKQGLVLQALQLMKDMME-HGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIA 454

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               P      T I         + AIEI + +L +GI P   + N LL GL    +L +
Sbjct: 455 KGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDN 514

Query: 414 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           V    + ML +      +T + L ++F  + +
Sbjct: 515 VVDTFKAMLEKGCTPNIITYNILIESFCKDRK 546



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 136/332 (40%), Gaps = 43/332 (12%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S  ++N ++++L + G F Q       MK+ G+   + T      S+C  G+   A+   
Sbjct: 110 SVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLL 169

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           + M   G E + V+  +++S   ++  Q      F   +K+ + PD  +F  L+    K+
Sbjct: 170 NNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKK 229

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GNV+E+ K F ++++R      ++  +  F+  L R   +DEA + L  +  E       
Sbjct: 230 GNVQESEKLFSKVMKR--GVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSE------- 280

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
                                        G  PD ++YN +     K+ ++ E E + H+
Sbjct: 281 -----------------------------GLTPDVISYNTLICGFCKHSKLVEAECYLHK 311

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M+ +  +P      T I     A   + A +I    +  G +P E + + L+ GL N G 
Sbjct: 312 MVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGD 371

Query: 411 LSDVRR-FAEEM---LNRRILIYEVTMHKLKK 438
           ++     F E M       I++Y   +  L K
Sbjct: 372 MNRAMAVFYEAMEKGFKHSIILYNTLVKGLSK 403


>gi|255542990|ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548519|gb|EEF50010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 511

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 157/372 (42%), Gaps = 20/372 (5%)

Query: 50  SSSARIICEILA--HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR 107
           S+ A I+ EIL   H     +ES+L   GI  +  L+H+ L     +   A+ FF ++  
Sbjct: 36  SNDAEIVSEILLNHHNPFHAMESSLQLHGITLSSSLLHQTLLRLRHNSKIALSFFHYSLS 95

Query: 108 --GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
                ++   +NL++D+L K  +F+  W  +  M ++ +  +  TF  +      AG   
Sbjct: 96  LPSSSVNTTTYNLIIDILSKVRQFDVSWQLIIQMDQNNLQPNSHTFLILIRRLISAGFTR 155

Query: 165 EAVMSFDVMSMHGVEQ-DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           +A+ +FD M     E  +      LL  +C+       A+E  N+ K    P+   + +L
Sbjct: 156 QAIRAFDDMESFIAETVNQTHFCFLLDTLCKY-GYIKVAVEVFNKRKFRFLPNVRIYTVL 214

Query: 224 LEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLR-VMK 281
           + GW K G ++ A +   EM E   E N   V+ Y   L  + R  ++    +F R +MK
Sbjct: 215 IYGWCKIGRIDMAERFIREMDEMGIEAN---VVTYNVLLDGICRRAKLQPEGRFERTIMK 271

Query: 282 GENCFPTLKFFS-----NALDILVKLNDSTHAVQLWD---IMMVFHGAFPDSLTYNMIFE 333
            +  F  ++         +  IL+ +    H  QL      +M   G  P   TY  + +
Sbjct: 272 ADKVFDEMRQKGIEPDVTSFSILLHVYSRAHKPQLTVDKLKLMEEMGICPTVATYTSVLK 331

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           CL    R+ + E+   +M++N   P                +PE A++++  I +  +  
Sbjct: 332 CLCSCGRIDDAEELLEQMVRNGVSPNAATYNCFFKEYRGRKDPETALKLYRKIRQENLCD 391

Query: 394 LEASANELLVGL 405
                  +L+G+
Sbjct: 392 PSVHTYNILLGM 403


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 136/314 (43%), Gaps = 13/314 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDE 165
           RG   SP  +N+M+D   K G  E+  + ++ M EDG V  + T+ ++ D  C + + +E
Sbjct: 387 RGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEE 446

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-----QTSRALEFLNRVKKIVD----PD 216
           A++ F+ M   G   +  + N+++  +C+Q       Q  +  E    +K++ D    PD
Sbjct: 447 ALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPD 506

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +++ L+ G      V++A     +MV+R +  P  V+   T +  L +  ++ EA + 
Sbjct: 507 VVTYSTLISGLCSIARVDDARHLLEDMVKR-QCKPT-VVTQNTLIHGLCKAGRIKEAREV 564

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
           L  M      P +  ++  +    +   +  A +L    MV  G  P+ +TY  +   L 
Sbjct: 565 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSD-MVARGLAPNVVTYTALVSGLC 623

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           K  R+ E    F +M  +   P        I     A + +  ++++  ++  GI P   
Sbjct: 624 KANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHV 683

Query: 397 SANELLVGLRNLGR 410
               L   L   GR
Sbjct: 684 VYGTLAAELCKSGR 697



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 144/344 (41%), Gaps = 40/344 (11%)

Query: 109 QRLSPYAWN--LMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           + +SP +W+  +++D L K G+     N  + +   GV  S   + S+    C A  +D+
Sbjct: 317 RNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDD 376

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFA 221
           A   F  M+  G     V  N ++ A C++        E  + +KK+++    PD  ++ 
Sbjct: 377 ARELFADMNRRGCPPSPVTYNVMIDASCKR----GMLEEACDLIKKMIEDGHVPDVVTYN 432

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            +++G  K   VEEA   F EM ER    P    ++ T ++ L +  ++D+A +     +
Sbjct: 433 TVMDGLCKSSRVEEALLLFNEM-ERLGCTPNR-RSHNTIILGLCQQSKIDQACQ-----R 485

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
           G+           A  +L ++ D  H               PD +TY+ +   L    RV
Sbjct: 486 GK--------LDEAFRLLKRMTDDGH--------------VPDVVTYSTLISGLCSIARV 523

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            +      +M+K + +PT +   T I  L  A   + A E+ + ++ +G  P   + N L
Sbjct: 524 DDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTL 583

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           + G    G+    R    +M+ R +    VT   L       +R
Sbjct: 584 VHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANR 627



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 160/397 (40%), Gaps = 29/397 (7%)

Query: 76  GIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMW 133
           GI P P L   V+Q   +      AV  F          P  +N+++D L K    E + 
Sbjct: 5   GIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVYNVLIDSLSKRQETEAVK 64

Query: 134 NAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
             V+VM + G      TF +I    C AGK DEA +  D M    +       + L   +
Sbjct: 65  KMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHEL 124

Query: 193 CRQENQTSRALEFLNRVKKIVDPDGDSFA--ILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           C +     RA + L      + P  +S A  I++    K   V++A +    M E+    
Sbjct: 125 CLR-GSMERAFQLLE-----IMPVANSSAYNIVVVALCKAARVDDALELARTMSEK--RI 176

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P    + ++ L+ L+   ++DEAL+  R  + E C  TL      L+          A +
Sbjct: 177 PLAAGSLDSVLVGLMDSGRIDEALQVYRENRREPCLVTLNVL---LEGFCSRGQVDKARE 233

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE------MIKNEWQPTPLNCA 364
           L   M     A PD ++Y  + + L K  RV E  + F +         +   P+     
Sbjct: 234 LLRAMPDEECA-PDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYN 292

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             I  L   D  + A++++  + E  + P   S   L+ GL   G+L+D R   +++L+ 
Sbjct: 293 IVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHS 352

Query: 425 RI----LIYEVTMHKLKKAFYNESRSMRDIFDSLERR 457
            +    + Y   +H L  A  N     R++F  + RR
Sbjct: 353 GVTPSTVAYTSLIHGLCMA--NSFDDARELFADMNRR 387



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 114/289 (39%), Gaps = 22/289 (7%)

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVK 210
           ++    C AG+  EA    D M   G   DVV  N+L+   CR   QT RA E L + V 
Sbjct: 547 TLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRA-GQTERARELLSDMVA 605

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
           + + P+  ++  L+ G  K   + EA   F +M  +      ++  Y   ++      QV
Sbjct: 606 RGLAPNVVTYTALVSGLCKANRLPEACGVFAQM--KSSGCAPNLFTYTALILGFCSAGQV 663

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW--DIMMVFHGAFPDSLTY 328
           D  LK    M      P    +      L K   S  A+++       +   A+ D + Y
Sbjct: 664 DGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEV-Y 722

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
               + L++  ++     F  +M++    P P  CA+ +  L  + +   A  +   I+ 
Sbjct: 723 RFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIM- 781

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437
                      +L  G +  G+ +   +F EEM+ +   I +  +  LK
Sbjct: 782 -----------DLAYGGKARGKAA---KFVEEMVGKGYEIEDAVLGPLK 816


>gi|297823811|ref|XP_002879788.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325627|gb|EFH56047.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 867

 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 162/374 (43%), Gaps = 42/374 (11%)

Query: 57  CEILAHASSDDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPY 114
           C+ +    + +I   +   GI P+  LVH+++Q  L  +SP +A++ F            
Sbjct: 391 CKNMEMEKAVEIYKRMKSVGIAPSSVLVHKMIQGCLKAESPEAALEIF------------ 438

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
                      N  FE  W A   M             IF   C  GK D A     +M 
Sbjct: 439 -----------NDSFET-WIAHGFMCN----------KIFLLLCKQGKVDAATSFLRMME 476

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+E +VV  N+++ A CR +N       F   ++K + P+  +++IL++G+ K  + +
Sbjct: 477 NKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLQPNNFTYSILIDGFFKNQDEQ 536

Query: 235 EANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFF 292
            A +   +M+   FE N    + Y T +  L +  Q  +A + L+ +  E  +      +
Sbjct: 537 NAWEVINQMIASNFEANE---VIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMGCTSY 593

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           ++ +D   K  D+  AV+ +   M  +G  P+ +T+  +     K+ R+    +  HEM 
Sbjct: 594 NSIIDGFFKEGDTDSAVEAYR-EMSENGISPNVVTFTSLINGFCKSNRMDLALEMIHEMK 652

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
             + +         I      ++ + A  +++ +LE G++P  +  N L+ G RNLG++ 
Sbjct: 653 SKDLKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGKMD 712

Query: 413 DVRRFAEEMLNRRI 426
                 ++M+N  I
Sbjct: 713 AAIDLYKKMVNDGI 726



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 146/340 (42%), Gaps = 19/340 (5%)

Query: 95  PSSAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFA 151
           P  A+  FR    RG       ++L V    K        + +R M+E G +  S  T+ 
Sbjct: 255 PEEAMKIFRRVMSRGAEPDGLLFSLAVQAACKMKDLVMALDLLREMREKGGVPASQETYT 314

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
           S+  +    G  +EAV   D M   G+   V+A  SL++  C   N+  +AL+F NR+++
Sbjct: 315 SVIVACVKEGNMEEAVKVKDEMVGFGIPMSVIAATSLITGFCNG-NELGKALDFFNRMEE 373

Query: 212 -IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
             + PD   F++++E + K   +E+A + +  M +     P  VL ++  +   ++ +  
Sbjct: 374 EGLAPDKVMFSVMIEWFCKNMEMEKAVEIYKRM-KSVGIAPSSVLVHK-MIQGCLKAESP 431

Query: 271 DEALKFLRVMKGENCFPTL---KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           + AL+        + F T     F  N + +L+       A   +  MM   G  P+ + 
Sbjct: 432 EAALEIFN-----DSFETWIAHGFMCNKIFLLLCKQGKVDAATSFLRMMENKGIEPNVVF 486

Query: 328 YN--MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           YN  M+  C +KN  +      F EM++   QP     +  I       + + A E+ N 
Sbjct: 487 YNNMMLAHCRMKNMDL--ARSIFSEMLEKGLQPNNFTYSILIDGFFKNQDEQNAWEVINQ 544

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
           ++ +     E   N ++ GL  +G+ S  +   + ++  +
Sbjct: 545 MIASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEK 584



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 92/249 (36%), Gaps = 37/249 (14%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           LS   F  + ++Y    + D AV  F++M    V   V  VN++LS++ R  N    A E
Sbjct: 167 LSSRAFNYLLNAYIRNRRMDYAVDCFNLMVDRNVVPFVPYVNNVLSSLVRS-NLIDEAKE 225

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
             N++  ++   GD+    L                                    +   
Sbjct: 226 IYNKMV-LIGVAGDNVTTQL-----------------------------------LMRAS 249

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
           +R ++ +EA+K  R +      P    FS A+    K+ D   A+ L   M    G    
Sbjct: 250 LRERKPEEAMKIFRRVMSRGAEPDGLLFSLAVQAACKMKDLVMALDLLREMREKGGVPAS 309

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
             TY  +    +K   + E  K   EM+      + +   + IT   + +E   A++ +N
Sbjct: 310 QETYTSVIVACVKEGNMEEAVKVKDEMVGFGIPMSVIAATSLITGFCNGNELGKALDFFN 369

Query: 385 YILENGILP 393
            + E G+ P
Sbjct: 370 RMEEEGLAP 378


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 144/328 (43%), Gaps = 21/328 (6%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-----RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           + +N ++  L K G+ E+    +     R +K D V    TF +    Y   GK  EA  
Sbjct: 509 FCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAV----TFGAFILGYSKTGKMTEAAK 564

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDSFAILL 224
            FD M  HG+  +    N L + +     +    +E L+  +++    V PD  + +  +
Sbjct: 565 YFDEMLDHGLMPN----NPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFI 620

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  K G V+EA K F E+ E+    P+ V  Y + +    +  +V++A +    M  + 
Sbjct: 621 HGLLKNGRVQEALKVFSELKEK-GLVPD-VFTYSSLISGFCKQGEVEKAFELHDEMCLKG 678

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P +  ++  +D L K  D   A +L+D  M   G  PDS+TY+ + +   K++ V E 
Sbjct: 679 IAPNIFIYNALVDGLCKSGDIQRARKLFD-GMPEKGLEPDSVTYSTMIDGYCKSENVAEA 737

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
              FHEM     QP        +       + E A+ ++  +L+ G      S N L+ G
Sbjct: 738 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG-FATTLSFNTLIDG 796

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVT 432
                ++ +  +  +EM+ ++I+   VT
Sbjct: 797 YCKSCKIQEASQLFQEMIAKQIMPDHVT 824



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 131/310 (42%), Gaps = 42/310 (13%)

Query: 125 KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           KNGR ++       +KE G++  + T++S+   +C  G+ ++A    D M + G+  ++ 
Sbjct: 625 KNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIF 684

Query: 184 AVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
             N+L+  +C+  + Q +R L F    +K ++PD  +++ +++G+ K  NV EA   F E
Sbjct: 685 IYNALVDGLCKSGDIQRARKL-FDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHE 743

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M  +      H   Y   +    +   +++A+   R M                      
Sbjct: 744 MPSK--GVQPHSFVYNALVHGCCKEGDMEKAMNLFREM---------------------- 779

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                              F  +L++N + +   K+ ++ E  + F EMI  +  P  + 
Sbjct: 780 ---------------LQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVT 824

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
             T I     A + E A  ++  + E  ++    +   L+ G   LG+ S+V    E+M+
Sbjct: 825 YTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMV 884

Query: 423 NRRILIYEVT 432
            + +   EVT
Sbjct: 885 AKGVKPDEVT 894



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 134/307 (43%), Gaps = 5/307 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N +VD L K+G  ++       M E G+     T++++ D YC +    EA   F  
Sbjct: 684 FIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHE 743

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   GV+      N+L+   C+ E    +A+     + +       SF  L++G+ K   
Sbjct: 744 MPSKGVQPHSFVYNALVHGCCK-EGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCK 802

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA++ F EM+ + +  P+HV  Y T +    +  +++EA    + M+  N       +
Sbjct: 803 IQEASQLFQEMIAK-QIMPDHV-TYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTY 860

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           ++ +    KL  S+    L++  MV  G  PD +TY ++     K   + E  K   E++
Sbjct: 861 TSLMYGYNKLGQSSEVFALFE-KMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVV 919

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                         IT L   ++   A ++ + + E G+ P  A+ N L+      G++ 
Sbjct: 920 GKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMD 979

Query: 413 DVRRFAE 419
           +  R  E
Sbjct: 980 EATRVFE 986



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 118/309 (38%), Gaps = 34/309 (11%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            ++ +  +Y   G+ +EA    D MS  GV  D+   N+++S + +       +   L  
Sbjct: 475 VYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 534

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER--FEWNPEH------------- 253
             + + PD  +F   + G+ K G + EA K F EM++      NP +             
Sbjct: 535 QGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNL 594

Query: 254 ------------------VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
                             V     F+  L++  +V EALK    +K +   P +  +S+ 
Sbjct: 595 MEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSL 654

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           +    K  +   A +L D  M   G  P+   YN + + L K+  +    K F  M +  
Sbjct: 655 ISGFCKQGEVEKAFELHD-EMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG 713

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
            +P  +  +T I     ++    A  +++ +   G+ P     N L+ G    G +    
Sbjct: 714 LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAM 773

Query: 416 RFAEEMLNR 424
               EML +
Sbjct: 774 NLFREMLQK 782



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/352 (19%), Positives = 138/352 (39%), Gaps = 43/352 (12%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +  +V  L K G        +  M E G+  +   ++ + +  C  G  DEAV     
Sbjct: 229 YTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRS 288

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G+  +      + + +CR +      L F    K  + PD ++ + L++G+ +EG+
Sbjct: 289 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 348

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++E  +    MV      P +++ Y   +  L +  ++++A + L+ M    C P  + F
Sbjct: 349 IDEVLRIKDVMVSC--GIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTF 406

Query: 293 SNALDILVKLNDSTHAVQLWDIM----------------------------------MVF 318
              ++   + ++   A++L D M                                  M F
Sbjct: 407 CLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTF 466

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            G  P+ + Y+++        R+ E  +    M  +   P        I+ L  A + E 
Sbjct: 467 SGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKME- 525

Query: 379 AIEIWNYILE---NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
             E   Y+LE    G+ P   +    ++G    G++++  ++ +EML+  ++
Sbjct: 526 --EASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLM 575



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 134/332 (40%), Gaps = 6/332 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A + ++D   + G  +++     VM   G+ ++L T+  +    C  GK ++A      M
Sbjct: 335 ACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGM 394

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G + +      L+   CR+ N   RALE L+ + K+ + P   S+  ++ G     +
Sbjct: 395 VTLGCKPNSRTFCLLIEGYCREHNM-GRALELLDEMEKRNLVPSAVSYGAMINGLCHCKD 453

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +  ANK   +M   F     +V+ Y   ++      +++EA + L  M      P +  +
Sbjct: 454 LSLANKLLEKMT--FSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCY 511

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +  L K      A   + + +   G  PD++T+        K  ++ E  K+F EM+
Sbjct: 512 NAIISCLSKAGKMEEA-STYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEML 570

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
            +   P        I     A     A+ I+  +   G+LP   + +  + GL   GR+ 
Sbjct: 571 DHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQ 630

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           +  +   E+  + ++    T   L   F  + 
Sbjct: 631 EALKVFSELKEKGLVPDVFTYSSLISGFCKQG 662



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/368 (19%), Positives = 151/368 (41%), Gaps = 12/368 (3%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           ++ ++++  Y S S       W       SP  +++++D   + G  ++  N   V K D
Sbjct: 128 VLTQMIRTPYSSSSILDSVLFWFRNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKND 187

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
            +L SL    S+       G  +     ++ M    +  DV     L+ A+C+  +    
Sbjct: 188 SILISLIRCNSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGA 247

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
               +   +K ++P+   +++++EG  + G+++EA +    M E+      +   Y    
Sbjct: 248 KRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEK--GLVPNTYTYTIIT 305

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             L R K+++EA      M+     P     S  +D  ++  D    +++ D+ MV  G 
Sbjct: 306 AGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDV-MVSCGI 364

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
             + +TYN++   L K  ++ +  +    M+    +P        I           A+E
Sbjct: 365 PINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALE 424

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLK 437
           + + + +  ++P   S   ++ GL +   LS   +  E+M    L   +++Y +    L 
Sbjct: 425 LLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSI----LI 480

Query: 438 KAFYNESR 445
            A+ +E R
Sbjct: 481 MAYASEGR 488



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/322 (19%), Positives = 119/322 (36%), Gaps = 38/322 (11%)

Query: 101  FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
            F     +G +   + +N +V    K G  E+  N  R M + G  +  +F ++ D YC +
Sbjct: 741  FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKS 800

Query: 161  GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
             K  EA   F  M                                   + K + PD  ++
Sbjct: 801  CKIQEASQLFQEM-----------------------------------IAKQIMPDHVTY 825

Query: 221  AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
              +++   K G +EEAN  F EM ER        + Y + +    +  Q  E       M
Sbjct: 826  TTVIDWHCKAGKMEEANLLFKEMQERNLI--VDTVTYTSLMYGYNKLGQSSEVFALFEKM 883

Query: 281  KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
              +   P    +   +    K ++   A +L D  +V  G       ++++   L K + 
Sbjct: 884  VAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRD-EVVGKGMLTKGTIHDLLITALCKRED 942

Query: 341  VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
            + E  K   EM +   +P+   C T +    +A + + A  ++  +   G++P   +  +
Sbjct: 943  LTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLID 1002

Query: 401  LLVGLRNLGRLSDVRRFAEEML 422
            L+ G  N     D R   ++++
Sbjct: 1003 LVNGNLNDTDSEDARNLIKQLV 1024


>gi|255660986|gb|ACU25662.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 376

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 166/364 (45%), Gaps = 20/364 (5%)

Query: 80  TPD-LVHEVLQLSYDSPSSAVDFFR-W---AGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           +PD +V+  +   Y   +   D F  W      G R S  ++N+M+  L  NG+ +++ +
Sbjct: 22  SPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNGKVDEVIS 80

Query: 135 AVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
              +MK+ G V    T+  +   +C  G  D+++   ++    G   D  A +++++ +C
Sbjct: 81  IWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLC 140

Query: 194 RQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           ++ N   RA+  LN  +K    P+   +  L+ G       E+A + F EM      +P 
Sbjct: 141 KEAN-LDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSP- 197

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
           +++ Y T +  L + +   EA   ++ +  +   P +  +S  +  L   +    A+QLW
Sbjct: 198 NIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLW 257

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML-- 370
           +  +   G  PD   +N++   L    ++      + +M  N W+  P N  +  T++  
Sbjct: 258 N-QVTSKGFKPDVQMHNVLIHGLCSVGKMQLALSLYFDM--NRWKCAP-NLVSHNTLMEG 313

Query: 371 --LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 428
              D D    A+ IW  IL NG+ P   S N  L GL +  R+SD   F  + + ++I++
Sbjct: 314 FYKDGDIRN-ALVIWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVL 372

Query: 429 YEVT 432
            ++T
Sbjct: 373 TKIT 376



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/338 (19%), Positives = 133/338 (39%), Gaps = 40/338 (11%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
            ++SP A  +N M++   +  + +  +    +M  +G  S+ +F  +       GK DE 
Sbjct: 19  SKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVSSFNIMMRGLFDNGKVDEV 78

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +  +++M   G  +D +    L+   C+      ++L                   +LE 
Sbjct: 79  ISIWELMKKSGFVEDSITYGILVHGFCKN-GYIDKSLH------------------VLEM 119

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
            E++G V +A                   AY   +  L +   +D A+  L  M    C 
Sbjct: 120 AEQKGGVLDA------------------FAYSAMINGLCKEANLDRAVSVLNGMIKSGCK 161

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P    ++  ++ LV  +    A++++  M   H + P+ +TYN +   L KN+   E   
Sbjct: 162 PNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCS-PNIITYNTLINGLCKNEMFGEAYN 220

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
              E++     P  +  +  +  L    + E A+++WN +   G  P     N L+ GL 
Sbjct: 221 LVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNVLIHGLC 280

Query: 407 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           ++G++        +M   +     V+ + L + FY + 
Sbjct: 281 SVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDG 318


>gi|125561327|gb|EAZ06775.1| hypothetical protein OsI_29018 [Oryza sativa Indica Group]
          Length = 511

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 145/373 (38%), Gaps = 50/373 (13%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM- 173
           A++ +VD LG+  +F+  W  V     DG  +  TFA +   Y  AG   +AV +FD M 
Sbjct: 105 AYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGMTRQAVRAFDDME 164

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +  G E D     +LL  +C+ +     A E  N+ K   +P+   + +L+ GW K    
Sbjct: 165 AFVGREPDAAEFTTLLDTLCKYKYPKV-AAEVFNKRKYKYEPNEKMYTVLIYGWCKVNRN 223

Query: 234 EEANKTFGEMV-------------------ERFEWNPEH--------------------- 253
           + A K   +M+                        +P++                     
Sbjct: 224 DMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVRAAEDLLKEMHQRGI 283

Query: 254 ---VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
              V +Y   L    R  + +  L   R MK     PT+  +++ +  L        A  
Sbjct: 284 EPDVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLASCGRLDDAES 343

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA---I 367
           L D  M   G  P   TYN  F+     K V+   + +++M K    P   +  T    +
Sbjct: 344 LLD-EMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKM-KAPGSPATPDIHTYNILL 401

Query: 368 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
            M +  ++ +  +++WN + E+ + P   S   L+ GL +  +  +  +F  EM+ R  L
Sbjct: 402 GMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFFMEMIERGFL 461

Query: 428 IYEVTMHKLKKAF 440
             ++T   L +  
Sbjct: 462 PQKITFETLYRGL 474



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 118/283 (41%), Gaps = 13/283 (4%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--------NQTSR 201
           +  +   +C   + D A      M  HG+E ++V  N LL+ ICR          ++T R
Sbjct: 210 YTVLIYGWCKVNRNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVR 269

Query: 202 ALEFLNRV--KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
           A E L +   ++ ++PD  S++++L  + +    E     F  M ER       V  Y +
Sbjct: 270 AAEDLLKEMHQRGIEPDVTSYSVILHVYSRAHKPELCLCMFRSMKERGIC--PTVATYTS 327

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH 319
            +  L    ++D+A   L  M  E   P+   ++          D   A+QL++ M    
Sbjct: 328 VIKCLASCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPG 387

Query: 320 G-AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
             A PD  TYN++    IK  +   V + +++M ++   P   +    +  L D  +   
Sbjct: 388 SPATPDIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWRE 447

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           A + +  ++E G LP + +   L  GL     L   RR  + +
Sbjct: 448 ACQFFMEMIERGFLPQKITFETLYRGLIQADMLRTWRRLKKRV 490



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 116/274 (42%), Gaps = 27/274 (9%)

Query: 200 SRALEFLNRVKKIVDPDGD------SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
            RA +F    + +V+   D      +FA+L   +   G   +A + F +M E F      
Sbjct: 114 GRARQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGMTRQAVRAFDDM-EAFVGREPD 172

Query: 254 VLAYETFLITLIRGKQVDEALKFL--RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
              + T L TL + K    A +    R  K E   P  K ++  +    K+N +  A Q 
Sbjct: 173 AAEFTTLLDTLCKYKYPKVAAEVFNKRKYKYE---PNEKMYTVLIYGWCKVNRNDMA-QK 228

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVH----------EVEKFFHEMIKNEWQPTPL 361
           +   M++HG  P+ +TYN++   + ++  +H            E    EM +   +P   
Sbjct: 229 FLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVRAAEDLLKEMHQRGIEPDVT 288

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           + +  + +   A +PE+ + ++  + E GI P  A+   ++  L + GRL D     +EM
Sbjct: 289 SYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLASCGRLDDAESLLDEM 348

Query: 422 LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLE 455
            +  +     T +     F+ E R  +D+  +L+
Sbjct: 349 ASEGVCPSPATYN----CFFKEYRGRKDVNGALQ 378


>gi|115476116|ref|NP_001061654.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|113623623|dbj|BAF23568.1| Os08g0369200 [Oryza sativa Japonica Group]
 gi|125603197|gb|EAZ42522.1| hypothetical protein OsJ_27088 [Oryza sativa Japonica Group]
 gi|215740653|dbj|BAG97309.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 511

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 145/373 (38%), Gaps = 50/373 (13%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM- 173
           A++ +VD LG+  +F+  W  V     DG  +  TFA +   Y  AG   +AV +FD M 
Sbjct: 105 AYDAVVDALGRARQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGMTRQAVRAFDDME 164

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +  G E D     +LL  +C+ +     A E  N+ K   +P+   + +L+ GW K    
Sbjct: 165 AFVGREPDAAEFTTLLDTLCKYKYPKV-AAEVFNKRKYKYEPNEKMYTVLIYGWCKVNRN 223

Query: 234 EEANKTFGEMV-------------------ERFEWNPEH--------------------- 253
           + A K   +M+                        +P++                     
Sbjct: 224 DMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVRAAEDLLKEMHQRGI 283

Query: 254 ---VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
              V +Y   L    R  + +  L   R MK     PT+  +++ +  L        A  
Sbjct: 284 EPNVTSYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLASCGRLDDAES 343

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA---I 367
           L D  M   G  P   TYN  F+     K V+   + +++M K    P   +  T    +
Sbjct: 344 LLD-EMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKM-KAPGSPATPDIHTYNILL 401

Query: 368 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
            M +  ++ +  +++WN + E+ + P   S   L+ GL +  +  +  +F  EM+ R  L
Sbjct: 402 GMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWREACQFFMEMIERGFL 461

Query: 428 IYEVTMHKLKKAF 440
             ++T   L +  
Sbjct: 462 PQKITFETLYRGL 474



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 13/283 (4%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--------NQTSR 201
           +  +   +C   + D A      M  HG+E ++V  N LL+ ICR          ++T R
Sbjct: 210 YTVLIYGWCKVNRNDMAQKFLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVR 269

Query: 202 ALEFLNRV--KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
           A E L +   ++ ++P+  S++++L  + +    E     F  M ER       V  Y +
Sbjct: 270 AAEDLLKEMHQRGIEPNVTSYSVILHVYSRAHKPELCLCMFRSMKERGIC--PTVATYTS 327

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH 319
            +  L    ++D+A   L  M  E   P+   ++          D   A+QL++ M    
Sbjct: 328 VIKCLASCGRLDDAESLLDEMASEGVCPSPATYNCFFKEYRGRKDVNGALQLYNKMKAPG 387

Query: 320 G-AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
             A PD  TYN++    IK  +   V + +++M ++   P   +    +  L D  +   
Sbjct: 388 SPATPDIHTYNILLGMFIKLNQHDTVMQVWNDMCESTVGPDLNSYTLLVHGLCDNKKWRE 447

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           A + +  ++E G LP + +   L  GL     L   RR  + +
Sbjct: 448 ACQFFMEMIERGFLPQKITFETLYRGLIQADMLRTWRRLKKRV 490



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 116/274 (42%), Gaps = 27/274 (9%)

Query: 200 SRALEFLNRVKKIVDPDGD------SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
            RA +F    + +V+   D      +FA+L   +   G   +A + F +M E F      
Sbjct: 114 GRARQFDAAWRLVVEAAADGAATPRTFAVLARRYVAAGMTRQAVRAFDDM-EAFVGREPD 172

Query: 254 VLAYETFLITLIRGKQVDEALKFL--RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
              + T L TL + K    A +    R  K E   P  K ++  +    K+N +  A Q 
Sbjct: 173 AAEFTTLLDTLCKYKYPKVAAEVFNKRKYKYE---PNEKMYTVLIYGWCKVNRNDMA-QK 228

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVH----------EVEKFFHEMIKNEWQPTPL 361
           +   M++HG  P+ +TYN++   + ++  +H            E    EM +   +P   
Sbjct: 229 FLKDMIYHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVRAAEDLLKEMHQRGIEPNVT 288

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           + +  + +   A +PE+ + ++  + E GI P  A+   ++  L + GRL D     +EM
Sbjct: 289 SYSVILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLASCGRLDDAESLLDEM 348

Query: 422 LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLE 455
            +  +     T +     F+ E R  +D+  +L+
Sbjct: 349 ASEGVCPSPATYN----CFFKEYRGRKDVNGALQ 378


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 137/286 (47%), Gaps = 19/286 (6%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +N +V+   K  R  +       MK+ G    +L T++ + D YC +G+  E +   + M
Sbjct: 152 YNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEM 211

Query: 174 SMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
              G++ DV   +SL+SA C + + +T R L F   +++ V P+  +++ L++G  + G 
Sbjct: 212 EREGLKADVFVYSSLISAFCGEGDIETGREL-FDEMLRRKVSPNVVTYSCLMQGLGRTGR 270

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--KGENCFPTLK 290
             EA++   +M  R    P+ V+AY      L +  +  +A+K L +M  KGE   P   
Sbjct: 271 WREASEMLKDMTAR-GVRPD-VVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEE--PGTL 326

Query: 291 FFSNALDILVK---LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
            ++  ++ L K   ++D+   V+    MMV  G  PD++TYN + + L    ++HE    
Sbjct: 327 TYNVVVNGLCKEDRMDDAFGVVE----MMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDL 382

Query: 348 FHEMIKNEW--QPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
           +  ++  ++  +P    C   I  L        A  I + ++E G+
Sbjct: 383 WKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGL 428



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 135/325 (41%), Gaps = 16/325 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM----KEDGVLSLPTFASIFDSYCGAGK 162
           RG R    A+ ++ D L KNGR       + +M    +E G L   T+  + +  C   +
Sbjct: 284 RGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTL---TYNVVVNGLCKEDR 340

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE---FLNRVKKIVDPDGDS 219
            D+A    ++M   G + D V  N+LL  +C    +   A++    L   K  V PD  +
Sbjct: 341 MDDAFGVVEMMVKKGKKPDAVTYNTLLKGLC-GAGKIHEAMDLWKLLLSEKFHVKPDVFT 399

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
              L++G  KEG V +A +    MVE   + N   ++ Y   +   +  +++ EALK  +
Sbjct: 400 CNNLIQGLCKEGRVHDAARIHSSMVEMGLQGN---IVTYNFLIEGYLAARKLIEALKLWK 456

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
                   P    +S  ++ L K+   + A  L+   M   G  P  + YN +   L + 
Sbjct: 457 YAVESGFSPNSMTYSVMINGLCKMQMLSVARGLF-CKMKDSGIRPTVIDYNALMTSLCRE 515

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
             + +    F EM         ++    I   L A + + A E+ + +    ++P   + 
Sbjct: 516 DSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTF 575

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLN 423
           + L+     LG L +     E+M++
Sbjct: 576 SILINRFSKLGMLDEAMGLYEKMVS 600



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 11/246 (4%)

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM- 280
           ++L+G+ + G  ++A   F +M   ++      + Y T +    + K++ EA      M 
Sbjct: 117 LVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMK 176

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
           KG +C P L  +S  +D   K  +    + L +  M   G   D   Y+ +         
Sbjct: 177 KGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLE-EMEREGLKADVFVYSSLISAFCGEGD 235

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           +    + F EM++ +  P  +  +  +  L        A E+   +   G+ P   +   
Sbjct: 236 IETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTV 295

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
           L  GL   GR  D  +  + M+ +      L Y V ++ L K    E R M D F  +E 
Sbjct: 296 LADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCK----EDR-MDDAFGVVEM 350

Query: 457 RCKTSQ 462
             K  +
Sbjct: 351 MVKKGK 356


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 136/318 (42%), Gaps = 13/318 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVR-VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +  ++  L   GR     + +  + K++  L+   ++++   YCG G+  EA+ +   
Sbjct: 569 YTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCE 628

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWE 228
           M   G+  D+V    L+    +Q++           +KK+ D    PD   +  +++ + 
Sbjct: 629 MIQRGINMDLVCHAVLIDGAMKQQDMK----RLFGLLKKMYDQGLRPDSVIYTSMIDAYS 684

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           KEG+ +++ +    MV   E    +V+ Y  F+  L +  ++D A      M   N  P 
Sbjct: 685 KEGSFKKSGECLDLMVT--EKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPN 742

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
              +   LD L K  +   A  L   M+   G   ++ TYN++     K  R+ E  K  
Sbjct: 743 SVTYGCFLDSLTKEGNMKEATDLHHEML--KGLLANTATYNILIRGFCKLGRLIEATKVL 800

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            EM +N   P  +  +T I     + +   A+E+W+ +L  G+ P   + N L+ G    
Sbjct: 801 SEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVN 860

Query: 409 GRLSDVRRFAEEMLNRRI 426
           G L        +ML+R +
Sbjct: 861 GALDKAFELRNDMLSRGL 878



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 124/276 (44%), Gaps = 12/276 (4%)

Query: 97  SAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFA 151
           SA D     GR G   + + +N +++ L K    E +  A  + K    ++LP    T++
Sbjct: 341 SAYDLVVKLGRFGFLPNLFVYNALINALCKG---EDLDKAELLYKNMHSMNLPLNDVTYS 397

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
            + DS+C  G  D A   F  M   G+ + +   NSL++  C+  + ++    +   + +
Sbjct: 398 ILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINE 457

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            ++P   +F  L+ G+ K+  VE+A K + EM E+ E  P  V  +   +  L    ++ 
Sbjct: 458 GLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEK-EIAPS-VYTFTALIYGLCSTNEMA 515

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           EA K    M      PT   ++  ++   K ++   A +L + M+  +G  PD+ TY  +
Sbjct: 516 EASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDML-HNGLVPDTYTYRPL 574

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
              L    RV   + F  ++ K   +   + C +A+
Sbjct: 575 ISGLCSTGRVSAAKDFIDDLHKKNLKLNEM-CYSAL 609



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 142/339 (41%), Gaps = 11/339 (3%)

Query: 128 RFEQMWNAVRVMKEDGVLS-LPTFASI---FDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           R +Q  + + +M E   L  +PT A++    D     G  D A      +   G   ++ 
Sbjct: 300 RVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLF 359

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
             N+L++A+C+ E+     L + N     +  +  +++IL++ + K G ++ A   FG M
Sbjct: 360 VYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRM 419

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           +E  +   E +  Y + +    +   +  A      M  E   PT   F+  +    K  
Sbjct: 420 IE--DGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDL 477

Query: 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
               A +L+  M     A P   T+  +   L     + E  K F EM++ + +PT +  
Sbjct: 478 QVEKAFKLYREMNEKEIA-PSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTY 536

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
              I     A   + A E+   +L NG++P   +   L+ GL + GR+S  + F +++  
Sbjct: 537 NVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHK 596

Query: 424 RRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQ 462
           + + + E+    L   +  + R    + ++L   C+  Q
Sbjct: 597 KNLKLNEMCYSALLHGYCGQGR----LTEALSASCEMIQ 631



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 118/274 (43%), Gaps = 6/274 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  + + YC A   D+A    + M  +G+  D      L+S +C    + S A +F++ 
Sbjct: 535 TYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLC-STGRVSAAKDFIDD 593

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + KK +  +   ++ LL G+  +G + EA     EM++R   N + ++ +   +   ++ 
Sbjct: 594 LHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQR-GINMD-LVCHAVLIDGAMKQ 651

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           + +      L+ M  +   P    +++ +D   K      + +  D +MV    FP+ +T
Sbjct: 652 QDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLD-LMVTEKCFPNVVT 710

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y      L K   +      F +M+     P  +     +  L      + A ++ + +L
Sbjct: 711 YTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEML 770

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           + G+L   A+ N L+ G   LGRL +  +   EM
Sbjct: 771 K-GLLANTATYNILIRGFCKLGRLIEATKVLSEM 803



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 69/326 (21%), Positives = 139/326 (42%), Gaps = 34/326 (10%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           LS+ T+  +    C  G   EA+     +   G+++DVV   +L+   CR + Q    + 
Sbjct: 251 LSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQ-QFDDGIC 309

Query: 205 FLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            +N + ++   P   + + L++G  K+GN++ A     ++  RF + P ++  Y   +  
Sbjct: 310 LMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKL-GRFGFLP-NLFVYNALINA 367

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV--------QLWDIM 315
           L +G+ +D+A    + M   N               + LND T+++         + D+ 
Sbjct: 368 LCKGEDLDKAELLYKNMHSMN---------------LPLNDVTYSILIDSFCKRGMLDVA 412

Query: 316 MVFHGAFPDS------LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
             + G   +         YN +     K   +   E  + +MI    +PT     T I+ 
Sbjct: 413 ESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISG 472

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
                + E A +++  + E  I P   +   L+ GL +   +++  +  +EM+ R+I   
Sbjct: 473 YCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPT 532

Query: 430 EVTMHKLKKAFYNESRSMRDIFDSLE 455
           EVT + + +  Y ++ +M   F+ LE
Sbjct: 533 EVTYNVMIEG-YCKAHNMDKAFELLE 557


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 141/336 (41%), Gaps = 14/336 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGAGK 162
           RG   + + +N +V      G   Q+  A R+ KE    D + +  TF  + D  C  G 
Sbjct: 262 RGIPPNVFTYNSIVHGFCNLG---QLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGM 318

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSF 220
             EA + F+ M+  GVE D+   N+L+   C Q   N+  +  E +  ++K   P   S+
Sbjct: 319 VSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIM--IRKGCAPGAHSY 376

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            IL+ G+ K   ++EA     EM  +   NP+ V  Y T +  L +  +  EAL   + M
Sbjct: 377 NILINGYCKSRRMDEAKSLLAEMYHK-ALNPDTV-TYSTLMQGLCQLGRPKEALNLFKEM 434

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                 P L  +   LD   K      A++L   M       P+ + Y ++ E +    +
Sbjct: 435 CSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKE-KKLEPNIVHYTILIEGMFIAGK 493

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           +   ++ F ++  +  +P        I  LL     + A +++  + ++G LP   S N 
Sbjct: 494 LEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNV 553

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           ++ G       S   R  +EM+ +R  +   T   L
Sbjct: 554 MIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQML 589



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 142/310 (45%), Gaps = 6/310 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y+ N++++ L +    +   + +  M + G+     TF ++ +  C  GK  EAV  F+ 
Sbjct: 129 YSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNE 188

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEG 231
           M   G E +V++  ++++ +C+  N TS A++   ++++    P+  +++ +++   K+ 
Sbjct: 189 MVKRGHEPNVISYTTVINGLCKTGN-TSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDR 247

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V +A +   EMVER    P +V  Y + +       Q++EA +  + M G +  P    
Sbjct: 248 LVNDAMEFLSEMVER--GIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVT 305

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           F+  +D L K    + A  +++  M   G  PD  TYN + +     + ++E +K F  M
Sbjct: 306 FTILVDGLCKEGMVSEARLVFET-MTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIM 364

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           I+    P   +    I     +   + A  +   +    + P   + + L+ GL  LGR 
Sbjct: 365 IRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRP 424

Query: 412 SDVRRFAEEM 421
            +     +EM
Sbjct: 425 KEALNLFKEM 434



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 14/278 (5%)

Query: 98  AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           AV+ F     RG   +  ++  +++ L K G      +  + M+++G   ++ T+++I D
Sbjct: 182 AVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIID 241

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIV 213
           S C     ++A+     M   G+  +V   NS++   C   Q N+ +R   F   V + V
Sbjct: 242 SLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRL--FKEMVGRDV 299

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            P+  +F IL++G  KEG V EA   F  M E+    P+ +  Y   +      + ++EA
Sbjct: 300 MPNTVTFTILVDGLCKEGMVSEARLVFETMTEK-GVEPD-ISTYNALMDGYCLQRLMNEA 357

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-PDSLTYNMIF 332
            K   +M  + C P    ++  ++   K      A  L   M  +H A  PD++TY+ + 
Sbjct: 358 KKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEM--YHKALNPDTVTYSTLM 415

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           + L +  R  E    F EM    + P P N  T + +L
Sbjct: 416 QGLCQLGRPKEALNLFKEMC--SYGPHP-NLVTYVILL 450



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 125/296 (42%), Gaps = 23/296 (7%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKK 211
           + +  C     D +V     M   G+  D +  N+L++ +C  E +   A+E  N  VK+
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLC-NEGKIKEAVELFNEMVKR 192

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
             +P+  S+  ++ G  K GN   A   F +M E+    P +V+ Y T + +L + + V+
Sbjct: 193 GHEPNVISYTTVINGLCKTGNTSMAVDVFKKM-EQNGCKP-NVVTYSTIIDSLCKDRLVN 250

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           +A++FL  M      P +  +++ +     L     A +L+   MV     P+++T+ ++
Sbjct: 251 DAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFK-EMVGRDVMPNTVTFTIL 309

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA-------DEPEIAIEIWN 384
            + L K   V E    F  M +   +P      +    L+D        +E +   EI  
Sbjct: 310 VDGLCKEGMVSEARLVFETMTEKGVEPD----ISTYNALMDGYCLQRLMNEAKKVFEI-- 363

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKL 436
            ++  G  P   S N L+ G     R+ + +    EM    LN   + Y   M  L
Sbjct: 364 -MIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGL 418



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 129/315 (40%), Gaps = 77/315 (24%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F     S+    +Y   V   + M +  V  +V ++N L++ +CR  N    ++  
Sbjct: 92  SVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRL-NHVDFSVSV 150

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+ + PD  +F  L+ G   EG ++EA + F EMV+R   +  +V++Y     T+
Sbjct: 151 LGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKR--GHEPNVISY----TTV 204

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
           I G                               L K  +++ AV ++  M   +G  P+
Sbjct: 205 ING-------------------------------LCKTGNTSMAVDVFKKMEQ-NGCKPN 232

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TY+ I + L K++ V++  +F  EM+                                
Sbjct: 233 VVTYSTIIDSLCKDRLVNDAMEFLSEMV-------------------------------- 260

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
              E GI P   + N ++ G  NLG+L++  R  +EM+ R ++   VT   L      E 
Sbjct: 261 ---ERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEG 317

Query: 445 --RSMRDIFDSLERR 457
                R +F+++  +
Sbjct: 318 MVSEARLVFETMTEK 332



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 3/210 (1%)

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V++A  +F  MV R    P  V+ +  FL +  + KQ    +     M        +   
Sbjct: 74  VDDALASFYRMV-RINPRPS-VVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSL 131

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  ++ L +LN    +V +   M    G  PD++T+N +   L    ++ E  + F+EM+
Sbjct: 132 NILINCLCRLNHVDFSVSVLGKMFKL-GIHPDAITFNALINGLCNEGKIKEAVELFNEMV 190

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           K   +P  ++  T I  L       +A++++  + +NG  P   + + ++  L     ++
Sbjct: 191 KRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVN 250

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
           D   F  EM+ R I     T + +   F N
Sbjct: 251 DAMEFLSEMVERGIPPNVFTYNSIVHGFCN 280


>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/403 (21%), Positives = 154/403 (38%), Gaps = 39/403 (9%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLM 119
           H+    +E AL  +G+     L   VL    D+ +    FF WA +  G R S   +  M
Sbjct: 69  HSRVPKLELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAM 128

Query: 120 VDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           + +LGK  +F  +W  +  M+ +    +S   F  +   +  A    +A+   D M  +G
Sbjct: 129 IKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMPKYG 188

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
            E D      LL A+C+       A      ++    P    F  LL GW +EG + EA 
Sbjct: 189 CEPDEHVFGCLLDALCKN-GSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLMEAK 247

Query: 238 KTF-------------------------GEMVERFEWNPE--------HVLAYETFLITL 264
                                       G+MV+ ++   E        +V+++ T +  L
Sbjct: 248 YVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQAL 307

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
              K+++EA++    M+   C      ++  +    K    +   +L D  M+  G  P+
Sbjct: 308 CAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLD-NMIQQGHIPN 366

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TY  I     K + + E  +   EM K    P        I +     E +  + +WN
Sbjct: 367 PMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWN 426

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
            +   G+ P   +   ++ G  +   L +   F +EM+ R +L
Sbjct: 427 EMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLL 469


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 120/278 (43%), Gaps = 8/278 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++D L KN    +  N    M    +  ++ T+ ++   +C  G   EAV   + M 
Sbjct: 212 YNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMK 271

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           +  +  DV   + L+ A+ ++    +  +     +K  V PD  ++  L++G+     V+
Sbjct: 272 LKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVK 331

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A   F  M +        V +Y   +  L + K VDEA+     MK +N  P    F++
Sbjct: 332 HAKYVFNSMAQ--SGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNS 389

Query: 295 ALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
            +D L K   S     +WD++  M       D +TY+ + + L KN  + +    F +MI
Sbjct: 390 LIDGLCK---SGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMI 446

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
             E QP        I  L      +IA E++ ++L  G
Sbjct: 447 TQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKG 484



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/281 (20%), Positives = 120/281 (42%), Gaps = 6/281 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +++++D LGK G+ +     + VM +  V   + T+ S+ D Y    +   A   F+ 
Sbjct: 280 YTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNS 339

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M+  GV   V +   ++  +C+ +     A+     +K K V P+  +F  L++G  K G
Sbjct: 340 MAQSGVTPGVQSYTIMIDGLCKTK-MVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSG 398

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +        +M +R +     V+ Y + +  L +   +D+A+   + M  +   P +  
Sbjct: 399 RIAYVWDLVDKMRDRSQL--ADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYT 456

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +D L K      A +++  +++  G   D  TY ++     K     E      +M
Sbjct: 457 YTILIDGLCKGGRLKIAQEVFQHLLI-KGYHLDIRTYTVMISGFCKAGLFDEALALLSKM 515

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
             N   P  +     I  L + DE + A ++   ++  G+L
Sbjct: 516 EDNGCIPNAITFDIIICALFEKDENDKAEKLLREMIARGLL 556



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/351 (20%), Positives = 148/351 (42%), Gaps = 14/351 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N ++  L K  RF    +  + +   G+ S L T   + + +C  G   +  +SF V
Sbjct: 70  FQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLG---QITLSFSV 126

Query: 173 MSM---HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWE 228
           ++     G   DV+ + +L+  +C +  +  +AL+F + V  +    D  S+  L+ G  
Sbjct: 127 LATILKRGYHPDVITLTTLIKGLCLR-GEVKKALKFHDDVVALEFQLDRISYGTLINGLC 185

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G  + A +    + ER    P+ V+ Y   + +L + K V EA      M  +  +P 
Sbjct: 186 KIGETKAAIQLMRNLEER-SIKPD-VVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPN 243

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  ++  +     +     AV L +  M      PD  T++++ + L K  ++   +   
Sbjct: 244 VVTYTTLIYGFCIMGCLIEAVALLN-EMKLKNINPDVYTFSILIDALGKEGKMKAAKIVL 302

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
             M+K   +P  +   + +      +E + A  ++N + ++G+ P   S   ++ GL   
Sbjct: 303 AVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKT 362

Query: 409 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR--DIFDSLERR 457
             + +     EEM ++ ++   +T + L        R     D+ D +  R
Sbjct: 363 KMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDR 413



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 127/293 (43%), Gaps = 5/293 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-N 207
           T  ++    C  G+  +A+   D +     + D ++  +L++ +C+   +T  A++ + N
Sbjct: 141 TLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKI-GETKAAIQLMRN 199

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
             ++ + PD   + I+++   K   V EA   + EM  + +  P +V+ Y T +      
Sbjct: 200 LEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAK-QIYP-NVVTYTTLIYGFCIM 257

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
             + EA+  L  MK +N  P +  FS  +D L K      A  +  +MM  +   PD +T
Sbjct: 258 GCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAY-VKPDVVT 316

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN + +       V   +  F+ M ++   P   +    I  L      + AI ++  + 
Sbjct: 317 YNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMK 376

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
              ++P   + N L+ GL   GR++ V    ++M +R  L   +T   L  A 
Sbjct: 377 HKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDAL 429


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 156/397 (39%), Gaps = 51/397 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           RG   +P   +++++   + G F     A++V+   G  L       +  + C  G  DE
Sbjct: 137 RGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDE 196

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN---------QTSRALEFLNRV-KKIVDP 215
            V     +   G E D+V+ N++L  +C  +          +  R  E L+++ +    P
Sbjct: 197 GVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTP 256

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ------ 269
           D   +A +++G  K+G+ E AN     M   +   P +V+ Y T L  L   ++      
Sbjct: 257 DLRMYATIIDGICKDGHHEVANDILSRM-PSYGLKP-NVVCYNTVLKGLCSAERWEEAED 314

Query: 270 -----------------------------VDEALKFLRVMKGENCFPTLKFFSNALDILV 300
                                        VD  ++ L  M    C P +  ++  ++   
Sbjct: 315 LLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFC 374

Query: 301 KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
           K      AV L   M    G  P++++Y ++ + L + +R  + ++    MI+    P P
Sbjct: 375 KEGLVDEAVMLLKNMSAC-GCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNP 433

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 420
           +   T I  +      E AIE+   +L NG  P   S + ++ GL   G+  +       
Sbjct: 434 VTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNV 493

Query: 421 MLNRRILIYEVTMHKLKKAFYNESRSMRDI--FDSLE 455
           M+N+ I    +    +  A   E R+ + I  FDS++
Sbjct: 494 MINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQ 530



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 151/335 (45%), Gaps = 8/335 (2%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAG 161
           R    G + +   +N ++  L    R+E+  + +  M +ED  L   TF  + D +C  G
Sbjct: 283 RMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNG 342

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSF 220
             D  +   + M  HG   DV+   ++++  C+ E     A+  L  +      P+  S+
Sbjct: 343 LVDRVIELLEQMLEHGCIPDVITYTTVINGFCK-EGLVDEAVMLLKNMSACGCKPNTISY 401

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEW-NPEHVLAYETFLITLIRGKQVDEALKFLRV 279
            I+L+G  +     +A +    M+++    NP   + + T +  + +    ++A++ L+ 
Sbjct: 402 TIVLKGLCRAERWVDAQELISHMIQQGCLPNP---VTFNTLINFMCKKGLAEQAIELLKQ 458

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M    C P L  +S  +D L K   +  A++L ++M +  G  P+++ Y+ +   L +  
Sbjct: 459 MLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVM-INKGITPNTIIYSSMASALSREG 517

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           R  ++ + F  +     +         I+ L    E + AI+ + Y++ NG +P E++  
Sbjct: 518 RTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYT 577

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
            L+ GL + G + + +    E+ +RR +   +  H
Sbjct: 578 ILIRGLASEGLVREAQDLLSELCSRRAVRKHLVRH 612



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 108/259 (41%), Gaps = 21/259 (8%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS--RALEFL 206
           T+  I  S C  G   +A+   D M + G        + +L A CR     S  RAL+ L
Sbjct: 110 TYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVL 169

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           +   K    D  +  +++    ++G V+E  +   ++   F   P+ +++Y   L  L  
Sbjct: 170 H--AKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKL-PSFGCEPD-IVSYNAVLKGLCM 225

Query: 267 GKQVDEA----LKFLRV------MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM- 315
            K+ D+     ++ +RV      M    C P L+ ++  +D + K  D  H V   DI+ 
Sbjct: 226 AKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICK--DGHHEVA-NDILS 282

Query: 316 -MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
            M  +G  P+ + YN + + L   +R  E E    EM + +     +     +       
Sbjct: 283 RMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNG 342

Query: 375 EPEIAIEIWNYILENGILP 393
             +  IE+   +LE+G +P
Sbjct: 343 LVDRVIELLEQMLEHGCIP 361


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 129/295 (43%), Gaps = 9/295 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++ D +   G  ++A    D M   G+E +++  N+LL+ +C+   +  +ALE +  
Sbjct: 313 TYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKA-GKMEKALEIMQE 371

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + +K V+PD  ++++L+EG  +  N+  A +   EM +R +  P  VL Y   +  L R 
Sbjct: 372 MMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKR-KLAPT-VLTYSVIINGLCRC 429

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
             +      LR M      P    ++  +    K      +  + + M    G  PD   
Sbjct: 430 GNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMRE-QGILPDVFC 488

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +     K KR+ E   +  EM++   +P        I     A E EIA   +N +L
Sbjct: 489 YNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEML 548

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL----IYEVTMHKLKK 438
             G+LP       L+ G    G +++       +L+RR+L     Y V +H L +
Sbjct: 549 SCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSR 603



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 140/326 (42%), Gaps = 9/326 (2%)

Query: 125 KNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           K G   + ++  R +    VL  + T++ +       GK  EA   F  +   G+  +  
Sbjct: 568 KEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAF 627

Query: 184 AVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
             NSL+S  C+Q N  + S+ LE +    K ++PD  ++ IL++G  K G +E A   F 
Sbjct: 628 TYNSLISGSCKQGNVDKASQLLEEM--CIKGINPDIVTYNILIDGLCKAGEIERAKNLFD 685

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           + +E     P + + Y   +    + K    A + L  M      P    ++  L+   K
Sbjct: 686 D-IEGRGLTP-NCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCK 743

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                 A+ L+  M+     F  ++++N + E   K+ ++ E      EMI+ ++ P  +
Sbjct: 744 EEKFEKALDLFQEML--EKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHV 801

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
              + I     A     A  +W  + E  ++P   +   LL G  N+G +S+V    EEM
Sbjct: 802 TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 861

Query: 422 LNRRILIYEVTMHKLKKAFYNESRSM 447
           + + I   ++T + +  A+  E   M
Sbjct: 862 VAKGIEPDKMTYYVMIDAYCREGNVM 887



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 5/238 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++D L K G  E+  N    ++  G+  +  T+A++ D YC +     A    + M 
Sbjct: 664 YNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEML 723

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           + GV  D    N +L+  C++E +  +AL+    + +       SF  L+EG+ K G ++
Sbjct: 724 LRGVPPDAFIYNVILNFCCKEE-KFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQ 782

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EAN    EM+E+ ++ P HV  Y + +    +   + EA +    M+  N  PT K +++
Sbjct: 783 EANHLLEEMIEK-QFIPNHV-TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTS 840

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
            L     + + +    L++  MV  G  PD +TY ++ +   +   V E  K   E++
Sbjct: 841 LLHGYHNIGNMSEVSALFE-EMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEIL 897



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 145/340 (42%), Gaps = 31/340 (9%)

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK------ 162
           R S  + N ++  L K  + E  W     M    VL  + T+ ++  ++C  G       
Sbjct: 186 RPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKR 245

Query: 163 -----------YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
                       DEA+     M   G+  D+   + L++  C ++      L  L  +  
Sbjct: 246 VLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDV 305

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQV 270
            + P+  ++  L++G+ ++G++E+A +   EMV    E N   ++ + T L  + +  ++
Sbjct: 306 GLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEAN---LIIWNTLLNGVCKAGKM 362

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
           ++AL+ ++ M  +   P  + +S  ++   +  +   A +L D M     A P  LTY++
Sbjct: 363 EKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLA-PTVLTYSV 421

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL--- 387
           I   L +   +        EM+ N  +P     A   T L+ A   E  +E    IL   
Sbjct: 422 IINGLCRCGNLQGTNAILREMVMNGLKPN----AVVYTTLMTAHAKEGRVEESRMILERM 477

Query: 388 -ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            E GILP     N L++G     R+ + R +  EML RR+
Sbjct: 478 REQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRL 517



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/416 (17%), Positives = 157/416 (37%), Gaps = 76/416 (18%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + ++L+P    ++++++ L + G  +     +R M  +G+  +   + ++  ++   G+ 
Sbjct: 408 KKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRV 467

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           +E+ M  + M   G+  DV   NSL+   C+ +         +  +++ + P+  ++   
Sbjct: 468 EESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAF 527

Query: 224 LEGWEKEGNVEEANKTFGEMVE------------------------------RFEWNP-- 251
           ++G+ K G +E A++ F EM+                               RF  +   
Sbjct: 528 IDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRV 587

Query: 252 -EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
            + V  Y   +  L R  ++ EA      ++ +   P    +++ +    K  +   A Q
Sbjct: 588 LQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQ 647

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           L + M +  G  PD +TYN++ + L K   +   +  F ++      P  +  A  +   
Sbjct: 648 LLEEMCI-KGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGY 706

Query: 371 LDADEPEIAIEIWNYILENGILP----------------------------LE------A 396
             +  P  A ++   +L  G+ P                            LE       
Sbjct: 707 CKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV 766

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM-----HKLKKAFYNESRSM 447
           S N L+ G    G+L +     EEM+ ++ +   VT      H  K     E++ +
Sbjct: 767 SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRL 822



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 2/170 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           RG     + +N++++   K  +FE+  +  + M E G  S  +F ++ + YC +GK  EA
Sbjct: 725 RGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEA 784

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
               + M       + V   SL+   C+          +L   ++ V P   ++  LL G
Sbjct: 785 NHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHG 844

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
           +   GN+ E +  F EMV +    P+  + Y   +    R   V EA K 
Sbjct: 845 YHNIGNMSEVSALFEEMVAK-GIEPDK-MTYYVMIDAYCREGNVMEACKL 892



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 7/189 (3%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDS 156
           A+D F+        S  ++N +++   K+G+ ++  + +  M E   + +  T+ S+ D 
Sbjct: 750 ALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDH 809

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
            C AG   EA   +  M    V        SLL       N +  +  F   V K ++PD
Sbjct: 810 NCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPD 869

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGE-MVERFEWNPEHVLAYETFLITLIRGKQV----D 271
             ++ ++++ + +EGNV EA K   E +V+         L   T  + + RG Q+    D
Sbjct: 870 KMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSV-IARGFQIAGNMD 928

Query: 272 EALKFLRVM 280
           EA + LR M
Sbjct: 929 EAAEVLRSM 937


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 160/378 (42%), Gaps = 25/378 (6%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           Y     A D F   A +GQ    +++N+M++     G    M +   +M  DG+     T
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 396

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +  +Y   G  D+A++ F+ M  HGV+ DVV   ++++A+CR         +F   +
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + V PD  ++  L++G+   G++ +A +   E++     N  H       L  +     
Sbjct: 457 DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN----NGMH-------LDIVFFSSI 505

Query: 270 VDEALKFLRVMKGENCF---------PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           ++   K  RVM  +N F         P    +S  +D    +     A++++D  MV  G
Sbjct: 506 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFD-AMVSAG 564

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             P+ + Y  +     K  R+ E    F EM++   +P+ +  +  I  L  A     A 
Sbjct: 565 IEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAK 624

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
             ++ + E+GI     + N +L GL       +     +E+    + I  +T++ +    
Sbjct: 625 VKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGM 684

Query: 441 YNESR--SMRDIFDSLER 456
           +   R    +D+F S+ R
Sbjct: 685 FQTRRVEEAKDLFASISR 702



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 146/316 (46%), Gaps = 12/316 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++++++  L   G+  Q  + +R+M E G +  P    + ++ D +   G  ++A   F
Sbjct: 183 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 242

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  D+V  NS++ A+C+      +A  FL + V K V P+  ++  L+ G+  
Sbjct: 243 KEMVQRGIPPDLVTYNSVVHALCKAR-AMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSS 301

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL--RVMKGENCFP 287
            G  +EA + F EM  R    P+ V+     + +L +  ++ EA        MKG+N  P
Sbjct: 302 TGQWKEAVRVFKEM-RRHSILPD-VVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN--P 357

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
            +  ++  L+             L+D+M+   G  PD  T+N++ +       + +    
Sbjct: 358 DVFSYNIMLNGYATKGCLVDMTDLFDLML-GDGIAPDFYTFNVLIKAYANCGMLDKAMII 416

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           F+EM  +  +P  +   T I  L    + + A+E +N +++ G+ P + + N L+ G   
Sbjct: 417 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCT 476

Query: 408 LGRLSDVRRFAEEMLN 423
            G L   +    E++N
Sbjct: 477 HGSLLKAKELISEIMN 492



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/380 (20%), Positives = 147/380 (38%), Gaps = 48/380 (12%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLV-HEVLQLSYDSPSSAVD----FFRWAGRGQR 110
           +C+      + D+   +A  G    PD+  + ++   Y +    VD    F    G G  
Sbjct: 334 LCKYGKIKEARDVFDTMAMKG--QNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIA 391

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
              Y +N+++      G  ++       M++ GV   + T+ ++  + C  GK D+A+  
Sbjct: 392 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK 451

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQT---------------------SRALEFLNR 208
           F+ M   GV  D  A N L+   C   +                       S  +  L +
Sbjct: 452 FNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 511

Query: 209 VKKIVD--------------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
           + +++D              PD   +++L++G+   G +E+A + F  MV        +V
Sbjct: 512 LGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVS--AGIEPNV 569

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA-VQLWD 313
           + Y T +    +  ++DE L   R M      P+   +S  +D L +   +  A V+  +
Sbjct: 570 VVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHE 629

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
             M   G   D  TYN++   L KN+   E    F E+     +   +   T I  +   
Sbjct: 630 --MTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQT 687

Query: 374 DEPEIAIEIWNYILENGILP 393
              E A +++  I  + ++P
Sbjct: 688 RRVEEAKDLFASISRSRLVP 707



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 3/210 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            ++ + D YC  GK ++A+  FD M   G+E +VV   +L++  C+          F   
Sbjct: 536 VYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREM 595

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +++ + P    ++I+++G  + G    A   F EM E        +  Y   L  L + +
Sbjct: 596 LQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTE--SGIAMDICTYNIVLRGLFKNR 653

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
             DEA+   + ++  N    +   +  +D + +      A  L+   +      P  +TY
Sbjct: 654 CFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLF-ASISRSRLVPSVVTY 712

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
           +++   LIK   V E E  F  M     +P
Sbjct: 713 SIMITNLIKEGLVEEAEDMFSSMQNAGCEP 742



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 115/276 (41%), Gaps = 16/276 (5%)

Query: 190 SAICRQENQTSRALEFLNRVK------KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           SA CR  +  + A+   NR        +++ P   ++AIL++   +    E A   FG++
Sbjct: 80  SAACR--SGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQL 137

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKL 302
           + R       ++A    L      K+ DEAL  L     E  C P +  +S  L  L   
Sbjct: 138 L-RTGLRVNIIIA-NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQ 195

Query: 303 NDSTHAVQLWDIMMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
             S  A  L   MM   GA   P+ + YN + +   K   V++    F EM++    P  
Sbjct: 196 GKSGQADDLLR-MMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDL 254

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 420
           +   + +  L  A   + A      ++   +LP   + N L+ G  + G+  +  R  +E
Sbjct: 255 VTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 314

Query: 421 MLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSL 454
           M    IL   VT+  L  +   Y + +  RD+FD++
Sbjct: 315 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM 350



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 106/271 (39%), Gaps = 8/271 (2%)

Query: 43  HLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY---DSPSSAV 99
           HLD  + SS    +C++     + +I       G+ P   +V+ +L   Y        A+
Sbjct: 496 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA-VVYSMLMDGYCLVGKMEKAL 554

Query: 100 DFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
             F      G   +   +  +V+   K GR ++  +  R M + G+  S   ++ I D  
Sbjct: 555 RVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 614

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
             AG+   A + F  M+  G+  D+   N +L  + +          F       V  + 
Sbjct: 615 FQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINI 674

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +   +++G  +   VEEA   F   + R    P  V+ Y   +  LI+   V+EA    
Sbjct: 675 ITLNTMIDGMFQTRRVEEAKDLFAS-ISRSRLVPS-VVTYSIMITNLIKEGLVEEAEDMF 732

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             M+   C P  +  ++ +  L+K N+   A
Sbjct: 733 SSMQNAGCEPNSRLLNHVVRELLKKNEIVRA 763


>gi|255660990|gb|ACU25664.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 376

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 165/364 (45%), Gaps = 20/364 (5%)

Query: 80  TPD-LVHEVLQLSYDSPSSAVDFFR-W---AGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           +PD +V+  +   Y   +   D F  W      G R S  ++N+M+  L  NG+ +++ +
Sbjct: 22  SPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNGKVDEVIS 80

Query: 135 AVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
              +MK+ G V    T+  +   +C  G  D+++   ++    G   D  A +++++ +C
Sbjct: 81  IWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAQQKGGVLDAFAYSAMINGLC 140

Query: 194 RQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           ++ N   RA+  LN  +K    P+   +  L+ G       E+A + F EM      +P 
Sbjct: 141 KEAN-LDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPT 198

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            ++ Y T +  L + +   EA   ++ +  +   P +  +S  +  L   +    A+QLW
Sbjct: 199 -IITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLW 257

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML-- 370
           +  +   G  PD   +N++   L    ++      + +M  N W+  P N  +  T++  
Sbjct: 258 N-QVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDM--NRWKCAP-NLVSHNTLMEG 313

Query: 371 --LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 428
              D D    A+ IW  IL NG+ P   S N  L GL +  R+SD   F  + + ++I++
Sbjct: 314 FYKDGDIRN-ALVIWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVL 372

Query: 429 YEVT 432
            ++T
Sbjct: 373 TKIT 376


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 154/369 (41%), Gaps = 41/369 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   ++ ++  L K    ++    +  M ++GV+ +  T+ SI   YC +G+  E
Sbjct: 228 RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE 287

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     M   GVE DVV  NSL+  +C+    T     F +  K+ + P+  ++  LL+
Sbjct: 288 AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    +  +VD+A+     M+ +  
Sbjct: 348 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 286 FPTLKFFSNALDILVK-------------------------LNDSTHAVQLWD------- 313
            P    +   + IL K                          N   H++ ++D       
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKE 465

Query: 314 --IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
             + M+  G   D++ +N I +   K  RV E EK F  M++   +P  +  +T I    
Sbjct: 466 LILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 525

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRIL 427
            A + + A ++   ++  G+ P   + N L+ G   + R+ D      EM    ++  I+
Sbjct: 526 LAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585

Query: 428 IYEVTMHKL 436
            Y + +  L
Sbjct: 586 TYNIILQGL 594



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/413 (20%), Positives = 158/413 (38%), Gaps = 89/413 (21%)

Query: 107 RGQRLSPYAWNLMVDVLGKNG------RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           RG+  S Y  N  +  + ++       R+ +M    R   ++   +L T+  +  S C A
Sbjct: 48  RGRGASIYGLNCALADVARHSPAAAVSRYNRM---ARAGADEVTPNLCTYGILIGSCCCA 104

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR-------------------------- 194
           G+ D    +   +   G   D +A   LL  +C                           
Sbjct: 105 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFS 164

Query: 195 ---------QENQTSRALEFLNRV---KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
                     EN++  ALE L  +        PD  S+  ++ G+ KEG++++A  T+ E
Sbjct: 165 YNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHE 224

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M++R      +V+ Y + +  L + + +D+A++ L  M      P  + +++ +      
Sbjct: 225 MLDRGIL--PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                A+     M    G  PD +TYN + + L KN R  E  K F  M K   +P    
Sbjct: 283 GQPKEAIGFLKKMHS-DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT 341

Query: 363 CATAIT------------MLLD---------------------ADEPEI--AIEIWNYIL 387
             T +              LLD                     A + ++  A+ +++ + 
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMR 401

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKL 436
           + G+ P   +   ++  L   GR+ D  R+ E+M++ R+    ++Y   +H L
Sbjct: 402 QQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL 454



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 135/319 (42%), Gaps = 13/319 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG  L    +N ++D   K GR  +      +M   GV   + T++++ D YC AGK DE
Sbjct: 473 RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 532

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A      M   G++ D V  N+L++  C+        + F       V PD  ++ I+L+
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  +      A + +  + E        +  Y   L  L +    DEAL+  + +    C
Sbjct: 593 GLFQTRRTAAAKELYVGITE--SGTQLELSTYNIILHGLCKNNLTDEALRMFQNL----C 646

Query: 286 FPTLKFFSNALDI----LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
              L+  +   +I    L+K+  +  A  L+  +   +G  PD  TY+++ E LI+   +
Sbjct: 647 LTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA-NGLVPDVRTYSLMAENLIEQGLL 705

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E++  F  M +N          + +  LL   +   A   + ++++     LEAS   L
Sbjct: 706 EELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA-GTYLFMIDEKHFSLEASTASL 764

Query: 402 LVGLRNLGRLSDVRRFAEE 420
            + L + G+  +  RF  E
Sbjct: 765 FLDLLSGGKYQEYHRFLPE 783



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 117/288 (40%), Gaps = 41/288 (14%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           +RLSP    +N ++  L    ++++    +  M + G+ L    F SI DS+C  G+  E
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE 497

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           +   FD+M   GV+ D++                                   +++ L++
Sbjct: 498 SEKLFDLMVRIGVKPDII-----------------------------------TYSTLID 522

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+   G ++EA K    MV      P+ V  Y T +    +  ++++AL   R M+    
Sbjct: 523 GYCLAGKMDEATKLLASMVS-VGMKPDCV-TYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P +  ++  L  L +   +  A +L+ + +   G   +  TYN+I   L KN    E  
Sbjct: 581 SPDIITYNIILQGLFQTRRTAAAKELY-VGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           + F  +   + Q         I  LL     + A +++  +  NG++P
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687


>gi|255661036|gb|ACU25687.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 376

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 152/334 (45%), Gaps = 14/334 (4%)

Query: 100 DFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYC 158
           D +   GR    +  ++N+M+  L  NG  ++  +   +MK+ G V    T+  I D +C
Sbjct: 46  DLWELMGRKGSQNVVSFNIMMRGLFDNGEVDKAISIWELMKKSGFVEDSITYGIIIDGFC 105

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDG 217
             G  ++++   ++    G   D  A +++++ +C+ E +  +A+  LN  +K    P+ 
Sbjct: 106 KNGYINKSLHVLEIAEGKGGVLDAFAYSAMINGLCK-EAKLDKAVSVLNGMIKSGCKPNA 164

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
             +  L+ G+      ++A + F EM    + +P  ++ Y T +  L +G++  EA   +
Sbjct: 165 HVYNTLINGFVGASKFDDAIRVFREM-GSMDCSPT-IVTYHTLINGLCKGERFSEAYDLV 222

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
           + M  +   P +  +S  +  L + +    A+QLW+  ++  G  PD   +N++   L  
Sbjct: 223 KEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWN-QVLSKGFKPDVQMHNILIHGLCS 281

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITML----LDADEPEIAIEIWNYILENGILP 393
             +       + +M  N W   P N  T  T++     D D    A+ IW  IL +G+ P
Sbjct: 282 VGKTQHALMLYFDM--NHWNCAP-NLVTHNTLMEGFYKDGDIRN-ALVIWARILRSGLQP 337

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
              S N  L GL +  R+S    F  + L ++I 
Sbjct: 338 DIISYNITLKGLCSCNRISFAILFLHDALTKKIF 371



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/340 (19%), Positives = 137/340 (40%), Gaps = 44/340 (12%)

Query: 109 QRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
            ++SP A  +N M+    + GR +  ++   +M   G  ++ +F  +       G+ D+A
Sbjct: 19  SKVSPDAVVYNAMLIGFLRVGRIKDCFDLWELMGRKGSQNVVSFNIMMRGLFDNGEVDKA 78

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILL 224
           +  +++M   G  +D +    ++   C+    N++   LE       ++D    +++ ++
Sbjct: 79  ISIWELMKKSGFVEDSITYGIIIDGFCKNGYINKSLHVLEIAEGKGGVLDAF--AYSAMI 136

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  KE  +++A      M++       HV  Y T +   +   + D+A++  R M   +
Sbjct: 137 NGLCKEAKLDKAVSVLNGMIKSGCKPNAHV--YNTLINGFVGASKFDDAIRVFREMGSMD 194

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C PT+                                    +TY+ +   L K +R  E 
Sbjct: 195 CSPTI------------------------------------VTYHTLINGLCKGERFSEA 218

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
                EM++  W+P  +  +  +  L    + E+A+++WN +L  G  P     N L+ G
Sbjct: 219 YDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVLSKGFKPDVQMHNILIHG 278

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           L ++G+         +M +       VT + L + FY + 
Sbjct: 279 LCSVGKTQHALMLYFDMNHWNCAPNLVTHNTLMEGFYKDG 318



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 122/259 (47%), Gaps = 12/259 (4%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G+G  L  +A++ M++ L K  + ++  + +  M + G   +   + ++ + + GA K+D
Sbjct: 122 GKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNTLINGFVGASKFD 181

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSF 220
           +A+  F  M        +V  ++L++ +C+ E    R  E  + VK++++    P   ++
Sbjct: 182 DAIRVFREMGSMDCSPTIVTYHTLINGLCKGE----RFSEAYDLVKEMLEKGWKPCVITY 237

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           ++L++G  +   VE A + + +++ +  + P+ V  +   +  L    +   AL     M
Sbjct: 238 SLLMKGLCQGHKVEMALQLWNQVLSK-GFKPD-VQMHNILIHGLCSVGKTQHALMLYFDM 295

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
              NC P L   +  ++   K  D  +A+ +W   ++  G  PD ++YN+  + L    R
Sbjct: 296 NHWNCAPNLVTHNTLMEGFYKDGDIRNALVIW-ARILRSGLQPDIISYNITLKGLCSCNR 354

Query: 341 VHEVEKFFHEMIKNEWQPT 359
           +     F H+ +  +  PT
Sbjct: 355 ISFAILFLHDALTKKIFPT 373


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 152/350 (43%), Gaps = 10/350 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+ +++  L +  R E+    +R M+E G  + +  F ++  +    G+  +A+   D +
Sbjct: 181 AYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEV 240

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
               +E D+V  N  +    +  N    A +F + +K + + PD  S+  ++    K G 
Sbjct: 241 KGSCLEPDIVLYNVCIDCFGKAGN-VDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGR 299

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + EA + F +M    E +     AY T ++      + ++A K L  ++   C P++  F
Sbjct: 300 LGEAEELFAQM--EAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSF 357

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           ++ L  L K      A+ L+++M     A P+S TYN+I + L    RV E  +   EM 
Sbjct: 358 NSILTCLGKKRKVDEALSLFEVMK--KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEME 415

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P  L     +  L  A + E A +I+    + G  P   +   L+ GL   G++ 
Sbjct: 416 HASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVD 475

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERR-CK 459
           +  R  E+ML+       V    L + F+   R      IF  L RR CK
Sbjct: 476 EAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCK 525



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 144/344 (41%), Gaps = 5/344 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   RG   S  ++N ++  LGK  + ++  +   VMK+D   +  T+  I D  C  G+
Sbjct: 344 RLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGR 403

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            +EA    D M    +  +++ VN ++  +C+          F +  ++  +PD  ++  
Sbjct: 404 VEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCS 463

Query: 223 LLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           L++G  K+G V+EA + F +M++     NP   + Y + +       + ++  K  + + 
Sbjct: 464 LIDGLGKKGQVDEAYRLFEKMLDAGHNANP---VVYTSLIRNFFIHGRKEDGHKIFKELI 520

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
              C P L   +  +D + K  +      +++ +  + G  PD  +Y+++   L K  + 
Sbjct: 521 RRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSY-GFLPDVRSYSILIHGLTKAGQA 579

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E    FH M +  +          +     + +   A EI   + E  + P  A+   +
Sbjct: 580 RETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAI 639

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           + GL  + RL +     EE  ++ I +  V    L   F    R
Sbjct: 640 VDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGR 683



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 129/292 (44%), Gaps = 9/292 (3%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L+H + +      +S + F     +G  L   A+N +VD   K+G+  + +  +  MKE 
Sbjct: 569 LIHGLTKAGQARETSNI-FHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEK 627

Query: 143 GVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
            V  ++ T+ +I D      + DEA M F+     G+E +VV  +SL+    +       
Sbjct: 628 CVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEA 687

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
            L     +KK + P+  ++  LL+   K   + EA   F  M E     P +   Y   +
Sbjct: 688 YLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEM--KCPPNTYTYSILI 745

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
             L R ++ ++A  F + M+ +   P +  ++  +  L K+ + T A  L++     +G 
Sbjct: 746 NGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKA-NGG 804

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
            PD+ ++N + E +    R  E  + F E      +   +N  + I+ LLDA
Sbjct: 805 IPDAASFNALIEGMSNANRAMEAYQVFEE---TRLRGCRINIKSCIS-LLDA 852



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/365 (18%), Positives = 143/365 (39%), Gaps = 39/365 (10%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           ++D LGK G+ ++ +     M + G  + P  + S+  ++   G+ ++    F  +   G
Sbjct: 464 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRG 523

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
            + D+  +N+ +  + +        + F +       PD  S++IL+ G  K G   E +
Sbjct: 524 CKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETS 583

Query: 238 KTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
             F  M ++ F  +     AY   +    +  +V +A + L  MK +   PT+  +   +
Sbjct: 584 NIFHAMKQQGFALDAR---AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIV 640

Query: 297 DILVKLNDSTHAVQLWD--------------------------------IM--MVFHGAF 322
           D L K++    A  L++                                I+  M+  G  
Sbjct: 641 DGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLT 700

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           P+  T+N + + L+K + ++E    F  M + +  P     +  I  L    +   A   
Sbjct: 701 PNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVF 760

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
           W  + + G++P   +   ++ GL  +G ++D     E       +    + + L +   N
Sbjct: 761 WQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSN 820

Query: 443 ESRSM 447
            +R+M
Sbjct: 821 ANRAM 825


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 120/264 (45%), Gaps = 3/264 (1%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   G++ DVV  N+L+ A+CR     +  L         V PD  +F  L++G+ +EG+
Sbjct: 176 MGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGS 235

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++ A +    M+E    +P  V      +    +  +V++AL +++        P    +
Sbjct: 236 IKAALRVKARMLE-MGCSPTKV-TVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITY 293

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  ++ L +     HA+++ D+M V  G  PD  TYN++  CL KN ++ E +   ++M+
Sbjct: 294 NTFVNGLCQNGHVGHALKVMDVM-VQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMV 352

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +    P      T I  L   +  E A+++   +   G+ P   + N L+  L  +G   
Sbjct: 353 ERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQ 412

Query: 413 DVRRFAEEMLNRRILIYEVTMHKL 436
              R  EEM +      EVT + L
Sbjct: 413 LALRLFEEMKSSGCTPDEVTYNTL 436



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 134/297 (45%), Gaps = 6/297 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  V+ L +NG        + VM ++G    + T+  + +  C  G+ +EA    + M 
Sbjct: 293 YNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMV 352

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D+   N+L+ A+C   N+   AL+   +V  K + PD  +F IL+    K G+ 
Sbjct: 353 ERGCLPDITTFNTLIVALC-SGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDP 411

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A + F EM +     P+ V  Y T +  L    ++ +AL  L+ M+   C  +   ++
Sbjct: 412 QLALRLFEEM-KSSGCTPDEV-TYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYN 469

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D L K      A +++D  M   G   +++T+N + + L K+KR+ +  +   +MI 
Sbjct: 470 TIIDGLCKKMRIEEAEEVFD-QMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMIS 528

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
              QP  +   + +T      + + A +I   +  NG      +   L+ GL   GR
Sbjct: 529 EGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGR 585



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 149/355 (41%), Gaps = 14/355 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G +     +N +++VL +  + + +      M E G+   + TF ++  + C A +   A
Sbjct: 145 GIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTA 204

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
           V+  + MS  GV  D     +L+     +E     AL    R+ ++   P   +  +L+ 
Sbjct: 205 VLMLEEMSSSGVAPDETTFTTLMQGFV-EEGSIKAALRVKARMLEMGCSPTKVTVNVLIN 263

Query: 226 GWEKEGNVEEA-NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           G+ K G VE+A      E+   FE  P+ +  Y TF+  L +   V  ALK + VM  E 
Sbjct: 264 GYCKLGRVEDALGYIQQEIANGFE--PDQI-TYNTFVNGLCQNGHVGHALKVMDVMVQEG 320

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P +  ++  ++ L K      A  + +  MV  G  PD  T+N +   L    R+ E 
Sbjct: 321 HDPDVFTYNIVVNCLCKNGQLEEAKGILN-QMVERGCLPDITTFNTLIVALCSGNRLEEA 379

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
                ++      P        I  L    +P++A+ ++  +  +G  P E + N L+  
Sbjct: 380 LDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDN 439

Query: 405 LRNLGRLSDVRRFAEEMLN----RRILIYEVTMHKLKKAFYNESRSMRDIFDSLE 455
           L +LG+L       +EM +    R  + Y   +  L K    E     ++FD ++
Sbjct: 440 LCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIE--EAEEVFDQMD 492



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 115/246 (46%), Gaps = 7/246 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D L   G+  +  + ++ M+  G   S  T+ +I D  C   + +EA   FD M 
Sbjct: 433 YNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMD 492

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
           + G+ ++ +  N+L+  +C+ +            + + + P+  ++  +L  + K+G+++
Sbjct: 493 LQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIK 552

Query: 235 EANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +A      M    FE +   V+ Y T +  L +  +   ALK LR M+ +    T K ++
Sbjct: 553 KAADILQTMTANGFEVD---VVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYN 609

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK-NKRVHEVEKFFHEMI 352
             +  L + N++  A+ L+  M    G  PD+ TY ++F  L +    + E   F  EM+
Sbjct: 610 PVIQSLFRRNNTRDAMNLFREMTEV-GEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMV 668

Query: 353 KNEWQP 358
              + P
Sbjct: 669 DKGFIP 674


>gi|218194640|gb|EEC77067.1| hypothetical protein OsI_15461 [Oryza sativa Indica Group]
          Length = 548

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 122/288 (42%), Gaps = 5/288 (1%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +++ L K GR  +  + V ++   G   +L TF S+ D YC  G   EAV   D M   G
Sbjct: 234 IINNLCKEGRVAEGKDIVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVG 293

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           VE D+   N+L+   C+          F + + K V     S+ I+L G  +      A 
Sbjct: 294 VEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTVVAK 353

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
           + F EM+E       H   Y T L  L R    DEA   L  +   N    +  F+  + 
Sbjct: 354 EMFHEMIESGMAVSIH--TYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIR 411

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
            + K+     A +L+  +  + G  P  LTY ++   LIK +   + +  F  M K+   
Sbjct: 412 AMFKVGRMQEAKELFAAISTY-GLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSGCT 470

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           P        I MLL+  E   A    + I + GILP EA+   LL+ L
Sbjct: 471 PDSCILNEIIRMLLNKGEIAKAGHYLSKIDKKGILP-EATTTSLLIYL 517



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 78/176 (44%), Gaps = 2/176 (1%)

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D   +  L++G    G++ +A +   +M+ +    P  +  + + +  L +  +V E   
Sbjct: 191 DTAVYGCLIQGQCNRGDLVKAKELISDMLSK-GIPPPCIKFFTSIINNLCKEGRVAEGKD 249

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
            + ++      P L  F++ +D    + +   AV L D M    G  PD  TYN + +  
Sbjct: 250 IVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESV-GVEPDIYTYNTLVDGY 308

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
            K+ R+ +    F +M+      T ++    +  L  A    +A E+++ ++E+G+
Sbjct: 309 CKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTVVAKEMFHEMIESGM 364


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 155/375 (41%), Gaps = 28/375 (7%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGA 160
           R    G + +   +  +VD + K G      + +R M+E    + ++  +++I DS C  
Sbjct: 209 RMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKD 268

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G++ +A   F  M   G+  D+   NS++   C     +         +++ + PD  ++
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+  + KEG   EA + + EM+ R      + + Y + +    +  ++D A     +M
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPR--GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM 386

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH-----GAFPDSLTYNMIFECL 335
             + C P L  F+  +D          A ++ D M + H     G   D+ TYN +    
Sbjct: 387 ATKGCSPNLITFNTLID------GYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE------- 388
                ++       EMI +   P  + C T +  L D  + + A+E++  + +       
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 389 ----NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
               NG+ P   + N L+ GL N G+  +     EEM +R I+   +T   +      +S
Sbjct: 501 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 445 R--SMRDIFDSLERR 457
           R      +FDS+  +
Sbjct: 561 RLDEATQMFDSMGSK 575



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/357 (19%), Positives = 156/357 (43%), Gaps = 19/357 (5%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +++SP    +N +++   K G+F +       M   G++ +  T++S+ D +C   + D 
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A   F +M+  G   +++  N+L+   C  + +    +E L+ + +  +  D  ++  L+
Sbjct: 379 AEHMFYLMATKGCSPNLITFNTLIDGYCGAK-RIDDGMELLHEMTETGLVADTTTYNTLI 437

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE- 283
            G+   G++  A     EM+      P+ ++  +T L  L    ++ +AL+  +VM+   
Sbjct: 438 HGFYLVGDLNAALDLLQEMISS-GLCPD-IVTCDTLLDGLCDNGKLKDALEMFKVMQKSK 495

Query: 284 ----------NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
                        P ++ ++  +  L+       A +L++  M   G  PD++TY+ + +
Sbjct: 496 KDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE-EMPHRGIVPDTITYSSMID 554

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L K  R+ E  + F  M    + P  +   T I     A   +  +E++  +   GI+ 
Sbjct: 555 GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVA 614

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 450
              +   L+ G R +G ++      +EM++  +    +T+  +    +++    R +
Sbjct: 615 NAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAV 671



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 159/370 (42%), Gaps = 19/370 (5%)

Query: 51  SSARIIC-----EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA 105
           S+AR+ C     + LA AS +  E+      +       HE+  L       A+D F   
Sbjct: 17  SAARLFCTRSIRDTLAKASGESCEAGFGGESLKLQSGF-HEIKGLE-----DAIDLFSDM 70

Query: 106 GRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
            R + L S   +  ++ V+ +  R + + +  + M+   +   + +F  +   +C   K 
Sbjct: 71  LRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKL 130

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
             A+ +F  ++  G+  DVV  N+LL  +C  E++ S AL   +++ +    P+  +F  
Sbjct: 131 PFALSTFGKITKLGLHPDVVTFNTLLHGLC-VEDRVSEALNLFHQMFETTCRPNVVTFTT 189

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G  +EG + EA      M+E     P  +  Y T +  + +      AL  LR M+ 
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMED-GLQPTQI-TYGTIVDGMCKIGDTVSALDLLRKMEE 247

Query: 283 -ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
             +  P +  +S  +D L K    + A  L+  M    G FPD  TYN +      + R 
Sbjct: 248 ISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQE-KGIFPDLFTYNSMIVGFCSSGRW 306

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            + E+   EM++ +  P  +     I   +   +   A E+++ +L  GI+P   + + +
Sbjct: 307 SDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSM 366

Query: 402 LVGLRNLGRL 411
           + G     RL
Sbjct: 367 IDGFCKQNRL 376


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 143/337 (42%), Gaps = 46/337 (13%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLN 207
           T+ +I D    AG YD  +  ++ M     E  ++    L+  +C+  ++  RA + F  
Sbjct: 108 TYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKA-HKVERACDVFEE 166

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            ++K   PD  +++ L++G  K G V+EA K    M+ R    P   +AY + +  L + 
Sbjct: 167 MIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMIAR--GPPPTAVAYTSIVAGLCKC 224

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            ++ EA+K ++ M+     P +  +S  +   + +     A  + +  M      PD+++
Sbjct: 225 GRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVME-EMADRDCAPDTIS 283

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQP---------------TPLNCATAITMLLD 372
           Y M  E L    R  E EK F  M++   +P                 +  AT +  L+D
Sbjct: 284 YTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMD 343

Query: 373 --ADEP------------------EIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
             A +P                  E A+E++  IL++GILP   + N ++  L  L ++ 
Sbjct: 344 KAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMD 403

Query: 413 DVRRFAEEMLNRR------ILIYEVTMHKLKKAFYNE 443
           +      EM  R+      I+ Y + +H L K    E
Sbjct: 404 EALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEE 440



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 147/353 (41%), Gaps = 47/353 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + ++VD L K  + E+  +    M   G    +  ++S+ D    AG+ DEA    D+M 
Sbjct: 144 YTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDLMI 203

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG----DSFAILLEGWEKE 230
             G     VA  S+++ +C+      R  E +  ++++         D+++ ++ G+   
Sbjct: 204 ARGPPPTAVAYTSIVAGLCK----CGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGM 259

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G VEEA     EM +R +  P+  ++Y  F+  L    + +EA K    M  + C P + 
Sbjct: 260 GKVEEAFAVMEEMADR-DCAPD-TISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMH 317

Query: 291 FFSNALDILVK---LNDSTHAVQLWD-------------IMMVF---------------- 318
            +   +D   K   +  +TH ++L D             IM  F                
Sbjct: 318 TYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRI 377

Query: 319 --HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI--KNEWQPTPLNCATAITMLLDAD 374
              G  P ++TYN +   L K K++ E  +   EM   K E +P+ +  +  I  L    
Sbjct: 378 LKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVG 437

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
             E A ++   +++NG++P   +   L+  L   G++S      EEML   I 
Sbjct: 438 MEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIF 490



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 131/326 (40%), Gaps = 38/326 (11%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYD 164
            RG   +  A+  +V  L K GR ++    ++ M+   +   + T++ I   Y G GK +
Sbjct: 204 ARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVE 263

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA    + M+      D ++    + A+     +      F   V+K   PD  ++ I++
Sbjct: 264 EAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIII 323

Query: 225 EGWEKEGNVEEA--------------NKTFGEMV-------ERFEWNPE----------- 252
           + + KEG++  A              N+    M+        R E   E           
Sbjct: 324 DNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGIL 383

Query: 253 -HVLAYETFLITLIRGKQVDEALKFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAV 309
              + Y T +  L + K++DEAL+ LR M  + E   P++  +S  +  L K+     A 
Sbjct: 384 PSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAF 443

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
            L    M+ +G  PD  TY  + + L    +V    +   EM+K    P      T + +
Sbjct: 444 DLL-AEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQI 502

Query: 370 LLDADEPEIAIEIWNYILENGILPLE 395
           L  +D  + A ++   ++ NG  P E
Sbjct: 503 LCRSD-VDAAWDLLQEMMRNGHTPNE 527



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 120/318 (37%), Gaps = 49/318 (15%)

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           NSLL A+ R   Q S AL F      I +P+  SF ILL G+    + E  N    EM  
Sbjct: 1   NSLLLALVRG-GQLSDALGFFQ--SSISEPNVSSFNILLRGFAARDDFEVVNALLREMKA 57

Query: 246 R---------------------------------------FEW--NPEHVLAYETFLITL 264
           R                                       FE    P+ V  Y   +  L
Sbjct: 58  RGITSNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSV-TYTAIVDGL 116

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            +    D  L++   M    C PTL  ++  +D L K +    A  +++  M+  G  PD
Sbjct: 117 FKAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFE-EMIRKGHKPD 175

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            + Y+ + + L K  RV E  K    MI     PT +   + +  L      + A++   
Sbjct: 176 IIAYSSLIDGLSKAGRVDEARKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQ 235

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            +    + P   + + ++ G   +G++ +     EEM +R      ++     +A Y+  
Sbjct: 236 EMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIG 295

Query: 445 R--SMRDIFDSL-ERRCK 459
           R      +F+++ E+ CK
Sbjct: 296 RREEAEKVFETMVEKGCK 313


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 154/349 (44%), Gaps = 15/349 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT---FASIFDSYCGAGKYD 164
           G +L    +  ++  L K G      + +R  + DG L  P    +++I D  C     +
Sbjct: 157 GFQLDQVGYGTLIHGLCKVGETRAALDLLR--RVDGNLVQPNVVMYSTIIDGMCKDKHVN 214

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAIL 223
           +A   +  M   G+  +VV  ++L+S       Q   A++  N+ + + + PD  +F IL
Sbjct: 215 DAFDLYSEMVSKGISPNVVTYSALISGF-FTVGQLKDAIDLFNKMILENIKPDVYTFNIL 273

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++G+ K+G ++E    F  M++  +    +V+ Y + +      K+V++A   L  M   
Sbjct: 274 VDGFCKDGKMKEGKTVFAMMMK--QGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQR 331

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P ++ ++  +D   K+     A+ L+  M   H   PD +TYN + + L K  ++  
Sbjct: 332 GVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKH-IIPDVVTYNSLIDGLCKLGKISY 390

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
             K   EM      P  +  ++ +  L    + + AI +   + + GI P   +   L+ 
Sbjct: 391 ALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILID 450

Query: 404 GLRNLGRLSDVRRFAEEML----NRRILIYEVTMHKL-KKAFYNESRSM 447
           GL   GRL D     E++L    N  +  Y V +H    K  ++E+ ++
Sbjct: 451 GLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALAL 499



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 115/267 (43%), Gaps = 4/267 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++VD   K+G+ ++      +M + G+  ++ T+ S+ D YC   + ++A      
Sbjct: 268 YTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYT 327

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           MS  GV  D+ + N L+   C+ +        F     K + PD  ++  L++G  K G 
Sbjct: 328 MSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGK 387

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +  A K   EM +R    P  ++ Y + L  L +  QVD+A+  L  +K +   P +  +
Sbjct: 388 ISYALKLVDEMHDR--GVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTY 445

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +D L K      A  +++ ++V  G      TY ++           E      +M 
Sbjct: 446 TILIDGLCKGGRLEDAHNIFEDLLV-KGYNITVNTYTVMIHGFCNKGLFDEALALLSKMK 504

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIA 379
            N   P  +     I  L D DE + A
Sbjct: 505 DNSCIPDAVTYEIIIRSLFDKDENDKA 531



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 93/189 (49%), Gaps = 5/189 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
            +  + RG      ++N+++D   K  + ++  N  + M    ++  + T+ S+ D  C 
Sbjct: 325 LYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCK 384

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
            GK   A+   D M   GV  D++  +S+L A+C+  +Q  +A+  L ++K + + P+  
Sbjct: 385 LGKISYALKLVDEMHDRGVPPDIITYSSILDALCKN-HQVDKAIALLTKLKDQGIRPNMY 443

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ IL++G  K G +E+A+  F +++ +  +N   V  Y   +         DEAL  L 
Sbjct: 444 TYTILIDGLCKGGRLEDAHNIFEDLLVK-GYNIT-VNTYTVMIHGFCNKGLFDEALALLS 501

Query: 279 VMKGENCFP 287
            MK  +C P
Sbjct: 502 KMKDNSCIP 510


>gi|255660870|gb|ACU25604.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 476

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 129/281 (45%), Gaps = 7/281 (2%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQMWNAVRVM 139
           +LV+ VL  S  +   A  FFRW  R           +  +++LG+  +       +  M
Sbjct: 5   ELVYNVLH-SSKTSEHAFHFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDM 63

Query: 140 KEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
            + G+      +  + DSY   G   E+V  F  M   GVE+ + + N+L   I R+   
Sbjct: 64  PKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRY 123

Query: 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
                 F   + + ++P   +F +++ G+   G VE A + F +M  R E +P+ V+ Y 
Sbjct: 124 MMGKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETAIRFFEDMKSR-EISPD-VVTYN 181

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
           T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L + M  F
Sbjct: 182 TMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF 241

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 242 -GTKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPT 281



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 104/226 (46%), Gaps = 11/226 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y   
Sbjct: 60  LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVER------TIKSYNAL 113

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +     ++   M  E   PT   F+  +           A++ ++ M     
Sbjct: 114 FKVILRRGRYMMGKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETAIRFFEDMKSREI 173

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
           + PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 174 S-PDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 232

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            +   +   G  P   + + LL GL N  ++S+ R   +EM+++ +
Sbjct: 233 RLVEEMKGFGTKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYL 278



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 132/318 (41%), Gaps = 15/318 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           W +M+D  GK G  ++     + M+E GV  ++ ++ ++F      G+Y      F+ M 
Sbjct: 75  WVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMGKRYFNKML 134

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G+E      N ++        +   A+ F   +K + + PD  ++  ++ G+ +   +
Sbjct: 135 SEGIEPTRHTFNVMIWGFFLS-GKVETAIRFFEDMKSREISPDVVTYNTMINGYYRVKKM 193

Query: 234 EEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           EEA K F EM  R   N E  V+ Y T +   +   QVD+AL+ +  MKG    P    +
Sbjct: 194 EEAEKYFVEMKGR---NIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGTKPNAITY 250

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           S  L  L      + A  +   MM  + A  D+  +  +     K+  +         MI
Sbjct: 251 STLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMI 310

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI-------LPLEASA-NELLVG 404
           +        +    I     A + + A+++ + ++E  I       L LE SA N ++  
Sbjct: 311 RLSVPTEAGHYGLLIENFCKAGQYDKAVKLLDKLIEKDIMLRPQSTLHLEPSAHNPMIEY 370

Query: 405 LRNLGRLSDVRRFAEEML 422
           L N G+ S       +++
Sbjct: 371 LCNNGQASKAETLVRQLM 388



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 60/311 (19%), Positives = 122/311 (39%), Gaps = 38/311 (12%)

Query: 97  SAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           +A+ FF    + + +SP    +N M++   +  + E+       MK   +  ++ T+ ++
Sbjct: 160 TAIRFFE-DMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTL 218

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
              Y    + D+A+   + M   G + + +  ++LL  +C  E  +   +     + K +
Sbjct: 219 IKGYVSVDQVDDALRLVEEMKGFGTKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYL 278

Query: 214 DPDGDS-FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
            P  +S F  L+    K GN++ A      M+ R    P     Y   +    +  Q D+
Sbjct: 279 APTDNSIFMRLISSHCKSGNLDAAADVLKAMI-RLSV-PTEAGHYGLLIENFCKAGQYDK 336

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A+K L  +  +             DI+++   + H                +   +N + 
Sbjct: 337 AVKLLDKLIEK-------------DIMLRPQSTLHL---------------EPSAHNPMI 368

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
           E L  N +  + E    +++K   Q PT LN  T I        P+ A E+   +L   +
Sbjct: 369 EYLCNNGQASKAETLVRQLMKLGVQDPTALN--TLIRGHSQEGSPDSAFELLKIMLRRKV 426

Query: 392 LPLEASANELL 402
              +++ N L+
Sbjct: 427 DSEKSAYNSLV 437


>gi|449431996|ref|XP_004133786.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
 gi|449477985|ref|XP_004155184.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
          Length = 485

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 162/406 (39%), Gaps = 48/406 (11%)

Query: 63  ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMV 120
           A+   + + L    I  + +LV  VL    +   +A  FF WAG+  G   S   ++ M+
Sbjct: 25  ANRIQVRNKLEHCFIKVSGELVVAVLSRIRNDWEAAFTFFVWAGKQPGYAHSVREYHSMI 84

Query: 121 DVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
            +LGK  +F+  W  +  M+       +++  T   +   YC      +A+ +F      
Sbjct: 85  SILGKMRKFDTAWALIDEMRGGTPGSSLVTPQTLLIMIRRYCAVHDVAKAINTFYAHKRF 144

Query: 177 GVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           G    +    SLLSA+CR +N + +  L F N  K +   +  SF I+L GW   G++ +
Sbjct: 145 GFNIGLEEFQSLLSALCRYKNVKDAEYLLFCN--KDVFPFNTKSFNIILNGWCVIGSLRD 202

Query: 236 ANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
             + + EM  R      H  ++Y + +    + + + + L+    MK     P  K ++ 
Sbjct: 203 TERVWKEMTRR---GISHDAVSYASCISCYSKVRNLHKVLRLFEDMKRMKIDPDRKVYNA 259

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +  L K      A  L   M    G   + +TYN + + L K +R  E    F E+++ 
Sbjct: 260 VIHSLAKGRCLKEAADLIKTMEE-KGIIANVVTYNSVIKPLCKARRFDEARAVFEELLQR 318

Query: 355 EWQPTPLNCATAITMLLDADEPEIAI---------------------------------E 381
              PT +    A    L  +E    +                                  
Sbjct: 319 GLCPT-IQTYHAFLRFLRTEEEIFELLKKMRTMGCNPTTDTYIMLIRKFCRWRQLDNVSR 377

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           IW+ + ENGI P  +S   L+ GL   G+L D  ++  EM  + +L
Sbjct: 378 IWHEMSENGISPDRSSYIVLIHGLFLNGKLEDAHKYYLEMKEKDLL 423



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/246 (20%), Positives = 96/246 (39%), Gaps = 39/246 (15%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFL 206
           +F  I + +C  G   +    +  M+  G+  D V+  S +S   +  N  +  R  E +
Sbjct: 186 SFNIILNGWCVIGSLRDTERVWKEMTRRGISHDAVSYASCISCYSKVRNLHKVLRLFEDM 245

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
            R+K  +DPD   +  ++    K   ++EA      M E+      +V+ Y + +  L +
Sbjct: 246 KRMK--IDPDRKVYNAVIHSLAKGRCLKEAADLIKTMEEK--GIIANVVTYNSVIKPLCK 301

Query: 267 GKQVDEA----------------------LKFLRV----------MKGENCFPTLKFFSN 294
            ++ DEA                      L+FLR           M+   C PT   +  
Sbjct: 302 ARRFDEARAVFEELLQRGLCPTIQTYHAFLRFLRTEEEIFELLKKMRTMGCNPTTDTYIM 361

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +    +     +  ++W   M  +G  PD  +Y ++   L  N ++ +  K++ EM + 
Sbjct: 362 LIRKFCRWRQLDNVSRIWH-EMSENGISPDRSSYIVLIHGLFLNGKLEDAHKYYLEMKEK 420

Query: 355 EWQPTP 360
           +  P P
Sbjct: 421 DLLPEP 426



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 83/202 (41%), Gaps = 10/202 (4%)

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF--FSNALDILVKLNDSTHAVQLWDI 314
           +++ L  L R K V +A   L   K    F T  F    N   ++  L D+    ++W  
Sbjct: 153 FQSLLSALCRYKNVKDAEYLLFCNKDVFPFNTKSFNIILNGWCVIGSLRDTE---RVWK- 208

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
            M   G   D+++Y     C  K + +H+V + F +M + +  P        I  L    
Sbjct: 209 EMTRRGISHDAVSYASCISCYSKVRNLHKVLRLFEDMKRMKIDPDRKVYNAVIHSLAKGR 268

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
             + A ++   + E GI+    + N ++  L    R  + R   EE+L R +     T H
Sbjct: 269 CLKEAADLIKTMEEKGIIANVVTYNSVIKPLCKARRFDEARAVFEELLQRGLCPTIQTYH 328

Query: 435 KLKKAFYNESRSMRDIFDSLER 456
               AF    R+  +IF+ L++
Sbjct: 329 ----AFLRFLRTEEEIFELLKK 346


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 160/378 (42%), Gaps = 25/378 (6%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           Y     A D F   A +GQ    +++N+M++     G    M +   +M  DG+     T
Sbjct: 350 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 409

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +  +Y   G  D+A++ F+ M  HGV+ DVV   ++++A+CR         +F   +
Sbjct: 410 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 469

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + V PD  ++  L++G+   G++ +A +   E++     N  H       L  +     
Sbjct: 470 DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN----NGMH-------LDIVFFSSI 518

Query: 270 VDEALKFLRVMKGENCF---------PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           ++   K  RVM  +N F         P    +S  +D    +     A++++D  MV  G
Sbjct: 519 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFD-AMVSAG 577

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             P+ + Y  +     K  R+ E    F EM++   +P+ +  +  I  L  A     A 
Sbjct: 578 IEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAK 637

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
             ++ + E+GI     + N +L GL       +     +E+    + I  +T++ +    
Sbjct: 638 MKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGM 697

Query: 441 YNESR--SMRDIFDSLER 456
           +   R    +D+F S+ R
Sbjct: 698 FQTRRVEEAKDLFASISR 715



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 146/316 (46%), Gaps = 12/316 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++++++  L   G+  Q  + +R+M E G +  P    + ++ D +   G  ++A   F
Sbjct: 196 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 255

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  D+V  NS++ A+C+      +A  FL + V K V P+  ++  L+ G+  
Sbjct: 256 KEMVQRGIPPDLVTYNSVVHALCKAR-AMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSS 314

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL--RVMKGENCFP 287
            G  +EA + F EM  R    P+ V+     + +L +  ++ EA        MKG+N  P
Sbjct: 315 TGQWKEAVRVFKEM-RRHSILPD-VVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN--P 370

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
            +  ++  L+             L+D+M+   G  PD  T+N++ +       + +    
Sbjct: 371 DVFSYNIMLNGYATKGCLVDMTDLFDLML-GDGIAPDFYTFNVLIKAYANCGMLDKAMII 429

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           F+EM  +  +P  +   T I  L    + + A+E +N +++ G+ P + + N L+ G   
Sbjct: 430 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCT 489

Query: 408 LGRLSDVRRFAEEMLN 423
            G L   +    E++N
Sbjct: 490 HGSLLKAKELISEIMN 505



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 128/329 (38%), Gaps = 51/329 (15%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G  ++P  Y +N+++      G  ++       M++ GV   + T+ ++  + C  GK D
Sbjct: 400 GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 459

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT---------------------SRAL 203
           +A+  F+ M   GV  D  A N L+   C   +                       S  +
Sbjct: 460 DAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSII 519

Query: 204 EFLNRVKKIVD--------------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
             L ++ +++D              PD   +++L++G+   G +E+A + F  MV     
Sbjct: 520 NNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVS--AG 577

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
              +V+ Y T +    +  ++DE L   R M      P+   +S  +D L +   +  A 
Sbjct: 578 IEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPA- 636

Query: 310 QLWDIMMVFH-----GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
                 M FH     G   D  TYN++   L KN+   E    F E+     +   +   
Sbjct: 637 -----KMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLN 691

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILP 393
           T I  +      E A +++  I  + ++P
Sbjct: 692 TMIDGMFQTRRVEEAKDLFASISRSRLVP 720



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 3/210 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            ++ + D YC  GK ++A+  FD M   G+E +VV   +L++  C+          F   
Sbjct: 549 VYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREM 608

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +++ + P    ++I+++G  + G    A   F EM E        +  Y   L  L + +
Sbjct: 609 LQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTE--SGIAMDICTYNIVLRGLFKNR 666

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
             DEA+   + ++  N    +   +  +D + +      A  L+   +      P+ +TY
Sbjct: 667 CFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLF-ASISRSRLVPNVVTY 725

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
           +++   LIK   V E E  F  M     +P
Sbjct: 726 SIMITNLIKEGLVEEAEDMFSSMQNAGCEP 755



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 115/276 (41%), Gaps = 16/276 (5%)

Query: 190 SAICRQENQTSRALEFLNRVK------KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           SA CR  +  + A+   NR        +++ P   ++AIL++   +    E A   FG++
Sbjct: 93  SAACR--SGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQL 150

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKL 302
           + R       ++A    L      K+ DEAL  L     E  C P +  +S  L  L   
Sbjct: 151 L-RTGLRVNIIIA-NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQ 208

Query: 303 NDSTHAVQLWDIMMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
             S  A  L   MM   GA   P+ + YN + +   K   V++    F EM++    P  
Sbjct: 209 GKSGQADDLLR-MMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDL 267

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 420
           +   + +  L  A   + A      ++   +LP   + N L+ G  + G+  +  R  +E
Sbjct: 268 VTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 327

Query: 421 MLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSL 454
           M    IL   VT+  L  +   Y + +  RD+FD++
Sbjct: 328 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM 363



 Score = 47.0 bits (110), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 107/271 (39%), Gaps = 8/271 (2%)

Query: 43  HLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY---DSPSSAV 99
           HLD  + SS    +C++     + +I       G+ P   +V+ +L   Y        A+
Sbjct: 509 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA-VVYSMLMDGYCLVGKMEKAL 567

Query: 100 DFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
             F      G   +   +  +V+   K GR ++  +  R M + G+  S   ++ I D  
Sbjct: 568 RVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 627

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
             AG+   A M F  M+  G+  D+   N +L  + +          F       V  + 
Sbjct: 628 FQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINI 687

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +   +++G  +   VEEA   F   + R    P +V+ Y   +  LI+   V+EA    
Sbjct: 688 ITLNTMIDGMFQTRRVEEAKDLFAS-ISRSRLVP-NVVTYSIMITNLIKEGLVEEAEDMF 745

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             M+   C P  +  ++ +  L+K N+   A
Sbjct: 746 SSMQNAGCEPNSRLLNHVVRELLKKNEIVRA 776


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 120/246 (48%), Gaps = 5/246 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+      YC  G+  +AV  FD M   GV  ++V  NSL+  +C+   + S A E +  
Sbjct: 327 TYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKA-GEVSGAWEIVKT 385

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + +  + PD  +  ILL+G  K   +++A   F ++VE     P+ V +Y   +      
Sbjct: 386 MHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVES-GLTPD-VWSYTILIHGCCTS 443

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           +++ EA+  LR M  +N  P +  +S  +D L +    ++A +L + M V  G  PD++T
Sbjct: 444 RRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHV-KGPLPDTIT 502

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y+++ + L K + + E    F++MIK   +P  +     I     ++  + AI ++  + 
Sbjct: 503 YSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMH 562

Query: 388 ENGILP 393
              ++P
Sbjct: 563 MKNLVP 568



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 152/355 (42%), Gaps = 28/355 (7%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE------DGVL---SLPTFASIFDSYC 158
           G  L+  ++ ++++ L +NGR  +  N +R++++      DG     ++  ++ + D  C
Sbjct: 137 GFSLNEVSYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLC 196

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
             G  DE    ++ M  +GV  +     SL+  +C       + LE    V +++    D
Sbjct: 197 RNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLC----GVGKFLEGFGLVDEMIRRGLD 252

Query: 219 S----FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
                F +L++G  K G + EA + F EMV R  + P  V          ++G  VD A 
Sbjct: 253 VSVYVFTVLIDGLCKNGMLVEAREMFDEMVNR-GYEPNIVTCTALMGGYCLKG-NVDMAR 310

Query: 275 KFLRVMKGENCFP----TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
           +    + GE  F     T   F +    + ++ D   AV+++D  M   G  P+ +TYN 
Sbjct: 311 ELFDAI-GEWGFKRDVWTYNVFIHGYCKVGRVRD---AVRVFD-EMCREGVVPNIVTYNS 365

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           + +CL K   V    +    M ++   P  + C   +  L  +   + AI ++N ++E+G
Sbjct: 366 LIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESG 425

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           + P   S   L+ G     R+ +      +M  + ++ + VT   L        R
Sbjct: 426 LTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGR 480



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 108/267 (40%), Gaps = 9/267 (3%)

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEE 235
           G   D VA+N++L  +C       +ALEF +  V      +  S+ IL+ G  + G V E
Sbjct: 102 GYGLDTVALNTVLKGLC-VNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLCENGRVNE 160

Query: 236 ANKTFGEMVERFEWNPE------HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           A      + +  E   +      +V+ Y   +  L R   VDE  +F   M G    P  
Sbjct: 161 AVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNE 220

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             + + +  L  +        L D  M+  G       + ++ + L KN  + E  + F 
Sbjct: 221 FTYGSLIRGLCGVGKFLEGFGLVD-EMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFD 279

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM+   ++P  + C   +         ++A E+++ I E G      + N  + G   +G
Sbjct: 280 EMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVG 339

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKL 436
           R+ D  R  +EM    ++   VT + L
Sbjct: 340 RVRDAVRVFDEMCREGVVPNIVTYNSL 366



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 10/172 (5%)

Query: 80  TPDLVHEVLQLSYDSPSSAVD-----FFRWAGRGQRLSPYAWNLMVDVLG--KNGRFEQM 132
           TPD+V   + L     S  +D     F +    G  L+P  W+  + + G   + R  + 
Sbjct: 392 TPDIVTCCILLDGLCKSKRLDQAILLFNQLVESG--LTPDVWSYTILIHGCCTSRRMGEA 449

Query: 133 WNAVRVMK-EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            N +R M  ++ V  + T++ + D  C +G+   A    + M + G   D +  + LL A
Sbjct: 450 MNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDA 509

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           + ++++       F   +K+ ++PD   + I+++G+ K   ++EA   F EM
Sbjct: 510 LWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREM 561



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 109 QRLSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           + L P+   ++ ++D L ++GR    W  +  M   G L    T++ + D+       DE
Sbjct: 459 KNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDE 518

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           AV  F+ M   G+E DV+    ++   C+ E        F     K + PD  ++ IL  
Sbjct: 519 AVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFN 578

Query: 226 GWEKEGN 232
              K G+
Sbjct: 579 AVFKSGS 585


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 149/331 (45%), Gaps = 9/331 (2%)

Query: 96  SSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
             AV   R     G R     +  ++  L      ++    +R M E G+  ++  ++ +
Sbjct: 130 GQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCL 189

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKI 212
              YC AG+++     F+ MS  G+E DVV    L+ ++CR E +  +A + +++ +++ 
Sbjct: 190 LQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCR-EGKVKKATQVMDKMMERG 248

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           ++P+  ++ +L+    KEG+V+EA      M+E+        + Y T +  L    ++DE
Sbjct: 249 LEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEK--GVALDAVTYNTLITGLSGVLEMDE 306

Query: 273 ALKFLRVM-KGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
           A+  L  M  GE    P +  F++ +  L K      A Q+ D MM  +G   + +T+N+
Sbjct: 307 AMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRD-MMAENGCACNLVTFNL 365

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +   L++  +V +  +   EM  +  +P     +  I       + + A  + + +  +G
Sbjct: 366 LIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDG 425

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           I P       LL  L   G +   R F +EM
Sbjct: 426 IEPELVHYIPLLAALCEQGMMEQARNFFDEM 456



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 10/233 (4%)

Query: 127 GRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           G  E+M +    M E  V+   TF S+    C  G+  +A    D+M+ +G   ++V  N
Sbjct: 309 GLLEEMIHG-ETMVEPNVV---TFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFN 364

Query: 187 SLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
            L+  + R  ++  +A+E ++ +    ++PD  +++IL+ G+ K   V+ A     +M  
Sbjct: 365 LLIGGLLRV-HKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKM-R 422

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
           R    PE V  Y   L  L     +++A  F   M  +NC   +  +S  +    +L D 
Sbjct: 423 RDGIEPELV-HYIPLLAALCEQGMMEQARNFFDEMH-KNCKLDVVAYSTMIHGACRLRDR 480

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
             A +     M+  G  PDS+TY+M+      +  +   E+   +M  + + P
Sbjct: 481 KSAEEFLK-HMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVP 532



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 105/249 (42%), Gaps = 3/249 (1%)

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
           +D V+ N++L+A+CRQ      AL  L  +     P   S+  L+     E    +A   
Sbjct: 76  RDAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGL 135

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
             +M +     P+ V+ Y T +  L     VD+A++ LR M      P +  +S  L   
Sbjct: 136 LRDM-QASGVRPD-VVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGY 193

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            K        ++++  M   G  PD + Y  + + L +  +V +  +   +M++   +P 
Sbjct: 194 CKAGRWECVSKVFE-EMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPN 252

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
            +     I  +      + A+ + N +LE G+     + N L+ GL  +  + +     E
Sbjct: 253 VVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLE 312

Query: 420 EMLNRRILI 428
           EM++   ++
Sbjct: 313 EMIHGETMV 321



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 88/196 (44%), Gaps = 19/196 (9%)

Query: 126 NGRFEQMWNAVRV------MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
           NG F +MW   R       M+ DG+   L  +  +  + C  G  ++A   FD M  +  
Sbjct: 403 NG-FCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKN-C 460

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKEGNVE 234
           + DVVA ++++   CR  ++ S A EFL   K ++D    PD  ++++L+  +   G++ 
Sbjct: 461 KLDVVAYSTMIHGACRLRDRKS-AEEFL---KHMLDEGLIPDSVTYSMLINMFANSGDLG 516

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A +   +M     + P+ V  +++ +         ++ L+ +R M  ++     K  S 
Sbjct: 517 AAERVLKQMTAS-GFVPD-VAVFDSLIKGYGAKGDTEKVLELIREMTAKDIALDSKIIST 574

Query: 295 ALDILVKLNDSTHAVQ 310
               LV  N+    +Q
Sbjct: 575 IYTCLVANNEGKALLQ 590


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 142/319 (44%), Gaps = 13/319 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +  ++  L   GR  +  + +  + +  V L+   ++++   YC  G+  EA+ +   
Sbjct: 576 YTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCE 635

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWE 228
           M   G+  D+V    L+    +Q ++ +    F + +K + D    PD   +  +++ + 
Sbjct: 636 MIQRGINMDLVCHAVLIDGALKQPDRKT----FFDLLKDMHDQGLRPDNVIYTSMIDTYS 691

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           KEG+ ++A + +  MV   E  P +V+ Y   +  L +  ++D A    + M+  N  P 
Sbjct: 692 KEGSFKKAFECWDLMVTE-ECFP-NVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPN 749

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
              +   LD L K  +   A+ L   M+   G   +++T+N+I     K  R HE  K  
Sbjct: 750 SITYGCFLDNLTKEGNMKEAIGLHHAML--KGLLANTVTHNIIIRGFCKLGRFHEATKVL 807

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            EM +N   P  +  +T I     +     ++++W+ +L  G+ P   + N L+ G    
Sbjct: 808 SEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVN 867

Query: 409 GRLSDVRRFAEEMLNRRIL 427
           G L       ++ML R I+
Sbjct: 868 GELDKAFELRDDMLRRGII 886



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 151/340 (44%), Gaps = 6/340 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G R  PY  + +V  + +   F +    +R M+ +G  LS+ T+  +    C   +  EA
Sbjct: 220 GVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEA 279

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
           V     +   G+  DVV   +L+   CR + Q    ++ ++ + ++   P   + + L++
Sbjct: 280 VEVKRSLGGKGLAADVVTYCTLVLGFCRLQ-QFEAGIQLMDEMVELGFSPTEAAVSGLVD 338

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K+G +++A +   + V RF + P ++  Y   + +L +G  +D+A      M   N 
Sbjct: 339 GLRKQGKIDDAYELVVK-VGRFGFVP-NLFVYNALINSLCKGGDLDKAELLYSNMSLMNL 396

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    +S  +D   +      A+  +D  M+  G       YN +     K   +   E
Sbjct: 397 RPNGITYSILIDSFCRSGRLDVAISYFD-RMIQDGIGETVYAYNSLINGQCKFGDLSAAE 455

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             F EM     +PT     + I+      + + A +++N +++NGI P   +   L+ GL
Sbjct: 456 SLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGL 515

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            +  ++++     +E++ R+I   EVT + L + +  + +
Sbjct: 516 CSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGK 555



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/360 (20%), Positives = 151/360 (41%), Gaps = 9/360 (2%)

Query: 103 RWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGA 160
           RW    G  LS   +N+++  L K  R  +     R +   G+ + + T+ ++   +C  
Sbjct: 249 RWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRL 308

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDS 219
            +++  +   D M   G      AV+ L+  + R++ +   A E + +V +    P+   
Sbjct: 309 QQFEAGIQLMDEMVELGFSPTEAAVSGLVDGL-RKQGKIDDAYELVVKVGRFGFVPNLFV 367

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  L+    K G++++A   +  M       P  +  Y   + +  R  ++D A+ +   
Sbjct: 368 YNALINSLCKGGDLDKAELLYSNM-SLMNLRPNGI-TYSILIDSFCRSGRLDVAISYFDR 425

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M  +    T+  +++ ++   K  D + A  L+ I M   G  P + T+  +     K+ 
Sbjct: 426 MIQDGIGETVYAYNSLINGQCKFGDLSAAESLF-IEMTNKGVEPTATTFTSLISGYCKDL 484

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           +V +  K +++MI N   P        I+ L   ++   A E+++ ++E  I P E + N
Sbjct: 485 QVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYN 544

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 457
            L+ G    G++       E+M  + ++    T   L     +  R    +D  D L ++
Sbjct: 545 VLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQ 604



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 124/261 (47%), Gaps = 17/261 (6%)

Query: 114 YAWNLMVDVLGKNG---RFEQMWNAVRVM--KEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           + +N +++ L K G   + E +++ + +M  + +G+    T++ + DS+C +G+ D A+ 
Sbjct: 366 FVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGI----TYSILIDSFCRSGRLDVAIS 421

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            FD M   G+ + V A NSL++  C+  + ++    F+    K V+P   +F  L+ G+ 
Sbjct: 422 YFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYC 481

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K+  V++A K + +M++     P +V  +   +  L    ++ EA +    +      PT
Sbjct: 482 KDLQVQKAFKLYNKMIDN-GITP-NVYTFTALISGLCSTNKMAEASELFDELVERKIKPT 539

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
              ++  ++   +      A +L + M    G  PD+ TY  +   L    RV + + F 
Sbjct: 540 EVTYNVLIEGYCRDGKIDKAFELLEDMHQ-KGLVPDTYTYRPLISGLCSTGRVSKAKDFI 598

Query: 349 HEMIKNEWQPTPLN--CATAI 367
            ++ K   Q   LN  C +A+
Sbjct: 599 DDLHK---QNVKLNEMCYSAL 616


>gi|255660936|gb|ACU25637.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 484

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 132/288 (45%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S  S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHGSKKS-EHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY  AG   E+V  F  M   GVE+ + + + L   
Sbjct: 65  RCILLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDVLFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F I++ G+   G VE AN+ F +M  R    P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNIMIWGFFLSGKVETANRFFEDMKSR-XITP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+   +  +   V ++    A++L
Sbjct: 184 D-VITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTXTTLIKGYVSVDRVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 XEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEARSXLKEMVDKYIAPT 289



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 11/226 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K G V+E+ K F +M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKLFQKMEELGVER------TIKSYDVL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NIMIWGFFLSGKVETANRFFEDMKSRX 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D  + A+
Sbjct: 181 ITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTXTTLIKGYVSVDRVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++ I
Sbjct: 241 RLXEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARSXLKEMVDKYI 286



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 49/258 (18%), Positives = 97/258 (37%), Gaps = 32/258 (12%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ T  ++   Y    + D+A+   + M   G++ + +  ++LL  +C  E  +      
Sbjct: 219 TVVTXTTLIKGYVSVDRVDDALRLXEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARSXL 278

Query: 206 LNRVKKIVDP-DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
              V K + P D   F  L+ G  K GN++ A      M+ R    P     Y   +   
Sbjct: 279 KEMVDKYIAPTDNSIFLRLISGQCKAGNLDAAADVLQAMI-RLSV-PTEAGHYGVLIENY 336

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            +  Q D+A+  L  +  +             DI+++   + H                +
Sbjct: 337 CKAGQYDKAINLLDKLIEK-------------DIILRPQSTLHM---------------E 368

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            + YN + E L  N R  + E    +++K   Q + +   T I        P+ A E+  
Sbjct: 369 XIAYNPLIEYLCNNGRTAKAETLVRQLMKLGVQDS-IALNTLILGHSQEGSPDSAFELLK 427

Query: 385 YILENGILPLEASANELL 402
            +L   I   +++ + L+
Sbjct: 428 IMLRRKIDSAKSAYDSLV 445


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 154/369 (41%), Gaps = 41/369 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   ++ ++  L K    ++    +  M ++GV+ +  T+ SI   YC +G+  E
Sbjct: 228 RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE 287

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     M   GVE DVV  NSL+  +C+    T     F +  K+ + P+  ++  LL+
Sbjct: 288 AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    +  +VD+A+     M+ +  
Sbjct: 348 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 286 FPTLKFFSNALDILVK-------------------------LNDSTHAVQLWD------- 313
            P    +   + IL K                          N   H++ ++D       
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKE 465

Query: 314 --IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
             + M+  G   D++ +N I +   K  RV E EK F  M++   +P  +  +T I    
Sbjct: 466 LILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 525

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRIL 427
            A + + A ++   ++  G+ P   + N L+ G   + R+ D      EM    ++  I+
Sbjct: 526 LAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585

Query: 428 IYEVTMHKL 436
            Y + +  L
Sbjct: 586 TYNIILQGL 594



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/414 (20%), Positives = 162/414 (39%), Gaps = 91/414 (21%)

Query: 107 RGQRLSPYAWNLMVDVLGKNG------RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           RG+  S Y  N  +  + ++       R+ +M    R   ++   +L T+  +  S C A
Sbjct: 48  RGRGASIYGLNCALADVARHSPAAAVSRYNRM---ARAGADEVTPNLCTYGILMGSCCCA 104

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR------------ 208
           G+ D    +   +   G   D +A   +L  +C  + +TS A++ + R            
Sbjct: 105 GRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLC-ADKRTSDAMDIVLRRMTQLGCIPNVF 163

Query: 209 -----VKKIVD----------------------PDGDSFAILLEGWEKEGNVEEANKTFG 241
                +K + D                      PD  S+  ++ G+ KEG++++A  T+ 
Sbjct: 164 SYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYH 223

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM++R      +V+ Y + +  L + + +D+A++ L  M      P  + +++ +     
Sbjct: 224 EMLDRGIL--PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCS 281

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                 A+     M    G  PD +TYN + + L KN R  E  K F  M K   +P   
Sbjct: 282 SGQPKEAIGFLKKMHS-DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEIT 340

Query: 362 NCATAIT------------MLLD---------------------ADEPEI--AIEIWNYI 386
              T +              LLD                     A + ++  A+ +++ +
Sbjct: 341 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKM 400

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKL 436
            + G+ P   +   ++  L   GR+ D  R+ E+M++ R+    ++Y   +H L
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL 454



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 68/349 (19%), Positives = 149/349 (42%), Gaps = 10/349 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N+++  L  + R ++    +++M +DG    P   ++ ++ + +   G  D+A  ++
Sbjct: 163 FSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTY 222

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  +VV  +S+++A+C+ +    +A+E L   VK  V P+  ++  ++ G+  
Sbjct: 223 HEMLDRGILPNVVTYSSIIAALCKAQ-AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCS 281

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G  +EA     +M    +     V+ Y + +  L +  +  EA K    M      P +
Sbjct: 282 SGQPKEAIGFLKKM--HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEI 339

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             +   L              L D +MV +G  P+   ++++     K  +V +    F 
Sbjct: 340 TTYGTLLQGYATKGALVEMHGLLD-LMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFS 398

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           +M +    P  +   T I +L  +   E A+  +  +++  + P     N L+  L    
Sbjct: 399 KMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFD 458

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD--IFDSLER 456
           +    +    EML+R I +  +  + +  +   E R +    +FD + R
Sbjct: 459 KWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVR 507



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 135/319 (42%), Gaps = 13/319 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG  L    +N ++D   K GR  +      +M   GV   + T++++ D YC AGK DE
Sbjct: 473 RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 532

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A      M   G++ D V  N+L++  C+        + F       V PD  ++ I+L+
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  +      A + +  + E        +  Y   L  L +    DEAL+  + +    C
Sbjct: 593 GLFQTRRTAAAKELYVGITE--SGTQLELSTYNIILHGLCKNNLTDEALRMFQNL----C 646

Query: 286 FPTLKFFSNALDI----LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
              L+  +   +I    L+K+  +  A  L+  +   +G  PD  TY+++ E LI+   +
Sbjct: 647 LTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA-NGLVPDVRTYSLMAENLIEQGLL 705

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E++  F  M +N          + +  LL   +   A   + ++++     LEAS   L
Sbjct: 706 EELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA-GTYLFMIDEKHFSLEASTASL 764

Query: 402 LVGLRNLGRLSDVRRFAEE 420
            + L + G+  +  RF  E
Sbjct: 765 FLDLLSGGKYQEYHRFLPE 783



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 117/288 (40%), Gaps = 41/288 (14%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           +RLSP    +N ++  L    ++++    +  M + G+ L    F SI DS+C  G+  E
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE 497

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           +   FD+M   GV+ D++                                   +++ L++
Sbjct: 498 SEKLFDLMVRIGVKPDII-----------------------------------TYSTLID 522

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+   G ++EA K    MV      P+ V  Y T +    +  ++++AL   R M+    
Sbjct: 523 GYCLAGKMDEATKLLASMVS-VGMKPDCV-TYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P +  ++  L  L +   +  A +L+ + +   G   +  TYN+I   L KN    E  
Sbjct: 581 SPDIITYNIILQGLFQTRRTAAAKELY-VGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           + F  +   + Q         I  LL     + A +++  +  NG++P
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687


>gi|255660956|gb|ACU25647.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 376

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 153/331 (46%), Gaps = 15/331 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           G R S  ++N+M+  L  NG+ +++ +   +MKE G V    T+  +   +C  G  D++
Sbjct: 55  GNR-SVSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYSDKS 113

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLE 225
           +   ++    G   D  A +++++ +C++ N   RAL  LN  +K    P+   +  L+ 
Sbjct: 114 LHVLEMAEQKGGVLDAFAYSAMINGLCKEAN-LDRALYVLNGMIKSGCKPNVHVYNTLIN 172

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G       E+A + F EM      +P  ++ Y T +  L + +   EA   ++ +  +  
Sbjct: 173 GLVGASKFEDAIRVFREM-GTMHCSPT-IITYNTLINGLCKNEMFGEAYNLVKELLDKGL 230

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P +  +S  +  L   +    A+QLW+  +   G  PD   +N++   L    ++    
Sbjct: 231 DPGVITYSMLMKGLCLDHKVERALQLWN-QVTSKGFKPDVQMHNILIHGLCSVGKMQLAL 289

Query: 346 KFFHEMIKNEWQPTPLNCATAITML----LDADEPEIAIEIWNYILENGILPLEASANEL 401
             + +M  N W+  P N  +  T++     D D    A+ IW  IL NG+ P   S N  
Sbjct: 290 SLYFDM--NRWKCAP-NLVSHNTLMEGFYKDGDIRN-ALVIWARILRNGLEPDIISYNIT 345

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
           L GL +  R+SD   F  + + ++I++ ++T
Sbjct: 346 LKGLCSCNRISDAILFLHDAVTKKIVLTKIT 376


>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 127/272 (46%), Gaps = 7/272 (2%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           +S  ++ SI D +   G+ D AV +++ M  +G+  +V+   SL+  +C+  N+  +ALE
Sbjct: 581 VSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMDGLCKN-NRMDQALE 639

Query: 205 FLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
             + +K K V  D  ++  L+ G+ K+ N+E A+  F E++E    NP   + Y + +  
Sbjct: 640 MRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEE-GLNPSQPV-YNSLISG 697

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
                 +  AL   + M  +     L  ++  +D L+K  +   A  L+  M    G  P
Sbjct: 698 FRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAV-GLVP 756

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D + Y +I   L K  +  +V K F EM KN   P  L     I         + A  + 
Sbjct: 757 DEIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLH 816

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVR 415
           + +L+ GILP  A+ + L+ G   +G+   +R
Sbjct: 817 DEMLDKGILPDGATFDILVSG--KVGKFQPIR 846



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 133/285 (46%), Gaps = 8/285 (2%)

Query: 141 EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
           E G+ ++    +I    C  GK D+A      M   G+  +VV+ N+++ A CR++N   
Sbjct: 436 ETGLANVFICNTILSWLCKQGKIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKNMDL 495

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYET 259
               F N ++K + P+  +++IL++G  K  + +   +   +M     E N    + Y+T
Sbjct: 496 ARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNG---VVYQT 552

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
            +  L +  Q  +A + L  M  E  F  +   +++ +D  +K  +  +AV  ++  M  
Sbjct: 553 IINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYE-EMCA 611

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA-ITMLLDADEPE 377
           +G  P+ +TY  + + L KN R+ +  +   EM KN+     +    A I         E
Sbjct: 612 NGISPNVITYTSLMDGLCKNNRMDQALEMRDEM-KNKGVKLDIPAYGALIHGFCKKSNME 670

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
            A  +++ +LE G+ P +   N L+ G RNLG +       ++ML
Sbjct: 671 SASALFSELLEEGLNPSQPVYNSLISGFRNLGNMVAALDLYKKML 715



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/404 (20%), Positives = 163/404 (40%), Gaps = 10/404 (2%)

Query: 47  PYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY--DSPSSAVDFF-R 103
           PY++ +   + +  +   + ++ S +   G+         +++ S   + P+ A++ F R
Sbjct: 198 PYVNRTLSALVQRNSITEAKELYSRMVAIGVDGDNGTTQLLMRASLREEKPAEALEVFSR 257

Query: 104 WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAG 161
              RG       ++L V    K        + +R MKE    V S  T+ S+  +    G
Sbjct: 258 AIERGAEPDSLLYSLAVQACCKTLNLAMANSLLREMKEKKLCVPSQETYTSVILASVKQG 317

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
             ++A+   D M   G+  +VVA  SL++  C+  +  S    F     +   P+  +F+
Sbjct: 318 NMEDAIRWKDEMVSDGISMNVVAATSLITGHCKNNDLGSALDLFYKMENEGPSPNSVTFS 377

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +L+E + K G +E+A + + +M E     P  V    T +   ++G++ +EALK      
Sbjct: 378 VLIERFSKNGEMEKALEFYKKM-ESLGLTPS-VFHVHTIIQGWLKGQKHEEALKLFD-ES 434

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            E     +   +  L  L K      A +L    M   G  P+ ++YN +     + K +
Sbjct: 435 FETGLANVFICNTILSWLCKQGKIDKATELLR-KMESRGIGPNVVSYNNVMLAHCRKKNM 493

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
                 F  M++   +P     +  I       + +  +E+ N +  + I         +
Sbjct: 494 DLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTI 553

Query: 402 LVGLRNLGRLSDVRRFAEEML-NRRILIYEVTMHKLKKAFYNES 444
           + GL  +G+ S  R     M+  +R  +  ++ + +   F  E 
Sbjct: 554 INGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIIDGFIKEG 597


>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
          Length = 719

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 141/346 (40%), Gaps = 21/346 (6%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           +F    +G + + Y +N M+    K+G FE+       M   G   +  T   I    C 
Sbjct: 356 WFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISELCS 415

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
            GK DEA   F  MS  G++ D +  NSL+   C+ E +    +  LN  V +   P   
Sbjct: 416 RGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCK-EGKVDERMNLLNELVAQDPQPSVS 474

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
            + +L+    K+G+ E A +  G+M  +      H  AY     T++ G       + +R
Sbjct: 475 LYELLIIKSCKDGDFEAAKRLLGDMSSK----GLHPNAYT--YDTMLHGSLKSGDFEHVR 528

Query: 279 VMKGENC---FPTLKFFSNA-LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
            +  E C   + T     N  +  L     S  A +++   M   G   D++TYN +   
Sbjct: 529 ELYNETCNKGYGTTTATCNKIISELCSRGKSDEASEMFK-KMSETGIKADAITYNSLIRG 587

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
             K  +V +     +E++    QP+  + A+ I  L    + E A  +W  ++  GI P 
Sbjct: 588 FCKEGKVGKSMNLLNELVAQGLQPSASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEPH 647

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
                 L+ GL   GR       A E ++R + + E  +   K AF
Sbjct: 648 ANLREHLISGLCKQGR-------ATEGMDRLMGMLENKIKPKKAAF 686



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/360 (20%), Positives = 141/360 (39%), Gaps = 25/360 (6%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV----MKEDGVLSLPTFASI 153
           ++ FF+W       +P       D +  N  FE + +A  V    M  D    +P  AS+
Sbjct: 107 SLRFFQWLCTNHDCTP-------DPISSNMLFEALLDAKAVRAAKMVRDIAGFIPDSASL 159

Query: 154 ---FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
                  CG G  +EA+  +  +   G+   +VA NS+LS  C +  +T    EF   + 
Sbjct: 160 EQYVKCLCGVGFIEEAIEVYFQLKEAGIRISIVACNSILSG-CLKAGKTELLFEFYQEMI 218

Query: 211 KI---VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF--EWNPEHVLAYETFLITLI 265
           K     D + ++   L++ +   G V    +   + ++      NP     Y   +    
Sbjct: 219 KAGTASDANTETVGCLIQAFCDSGQVARGYELLNQFLKTGLDPGNP----TYNKLIAGFC 274

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           + K      + L  M   N  PT+  +   ++ L K  +   A ++++ +    G  PD 
Sbjct: 275 QAKNYASMSEVLHTMIARNHLPTIYTYQEIINGLCKNEECLEAYRVFNDLKD-RGYAPDR 333

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           + Y  +   L +     E  K + EM+    QP      T +   L + + E A E++N 
Sbjct: 334 VMYTTMIHGLCEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNE 393

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           +   G      + N+++  L + G+  +     ++M    I    +T + L + F  E +
Sbjct: 394 MCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGK 453


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 159/355 (44%), Gaps = 17/355 (4%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT---FASIFDSYCG 159
           +   +G +L+  ++  +++ + K G        +R  K DG L+ P    +++I D+ C 
Sbjct: 402 KLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLR--KIDGRLTKPNVEMYSTIIDALCK 459

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
                EA   F  M++ G+  DVV  ++L+   C    +   A+  LN  V K ++PD  
Sbjct: 460 YQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCI-VGKLKEAIGLLNEMVLKTINPDVR 518

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ IL++   KEG V+EA      M++     P+ V  Y T +   +   +V +A     
Sbjct: 519 TYTILVDALGKEGKVKEAKSVLAVMLKAC-VKPD-VFTYNTLMNGYLLVYEVKKAQHVFN 576

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M      P +  ++  ++   K      A+ L+  M       PD++TY+ + + L K+
Sbjct: 577 AMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQ-KNMVPDTVTYSSLVDGLCKS 635

Query: 339 KRVHEVEKFFHEMIKNEWQPTP-LNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
            R+  V     EM ++  QP   +   + I  L      + AI ++N + + GI P   +
Sbjct: 636 GRISYVWDLIDEM-RDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFT 694

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMH-KLKKAFYNESRSM 447
              LL GL   GRL D +   +++L +     + IY V ++   K+    E+ +M
Sbjct: 695 FTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTM 749



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 138/316 (43%), Gaps = 8/316 (2%)

Query: 97  SAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIF 154
           +A+ F R   GR  + +   +N ++D L K     + +     M   G+  ++ T++++ 
Sbjct: 116 AAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLI 175

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIV 213
             +C  GK  EA+   +VM +  +  +V   N L+ A+C+ E +   A   L   +K  V
Sbjct: 176 YGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCK-EGKVKEAKSVLAVMLKACV 234

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
             +  +++ L++G+     V++A   F  M       P+ V +Y   +    + K+VD+A
Sbjct: 235 KSNVITYSTLMDGYFLVYEVKKAQHVFNAM-SLMGVTPD-VHSYNIMINGFCKIKRVDKA 292

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
           L   + M     FP +  F+  LD   K+   + AV L    +   G  PD  T N++  
Sbjct: 293 LNLFKEMILSR-FPPIIQFNKILDSFAKMKHYSTAVSLSH-RLELKGIQPDLFTLNILIN 350

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           C     ++        +++K  + P+ +   T I  L    + + A+   + +L  G   
Sbjct: 351 CFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQL 410

Query: 394 LEASANELLVGLRNLG 409
            + S   L+ G+  +G
Sbjct: 411 NQVSYATLINGVCKIG 426



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 123/280 (43%), Gaps = 6/280 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + ++VD LGK G+ ++  + + VM +  V   + T+ ++ + Y    +  +A   F+ M
Sbjct: 519 TYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAM 578

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
           S+ GV  DV     L++  C+ +     AL     + +K + PD  +++ L++G  K G 
Sbjct: 579 SLMGVTPDVHTYTILINGFCKSK-MVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGR 637

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +        EM +R +  P  V+ Y + +  L +   +D+A+     MK +   P    F
Sbjct: 638 ISYVWDLIDEMRDRGQ--PADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTF 695

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  LD L K      A +++  ++   G   D   YN++     K   + E      +M 
Sbjct: 696 TILLDGLCKGGRLKDAQEVFQDLLT-KGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKME 754

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
           +N   P  +     I  L   DE + A ++   ++  G+L
Sbjct: 755 ENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARGLL 794



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 92/433 (21%), Positives = 169/433 (39%), Gaps = 30/433 (6%)

Query: 17  IPSSSSTTTSPT-SHNPHRPT------RPRF--PTHLDAPYISSSARIICEILAHASSDD 67
           I  +SS  +SPT S N   PT       P F  P  +     + S  ++ +IL      D
Sbjct: 3   ISKTSSVISSPTTSQNSQSPTPLKDCDSPPFFLPPSIQNVDDAVSLSVLTKILKRGYPPD 62

Query: 68  IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNG 127
             +       +     V E L   +D         +   +G +L+  ++  +++ + + G
Sbjct: 63  TVTLNTLIKGLCLKGQVKEALHF-HD---------KLLAQGFQLNQVSYATLINGVCRIG 112

Query: 128 RFEQMWNAVRVMKEDGVLSLPT---FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184
                   +R  K DG L+ P    + +I D+ C      EA   F  M++ G+  +VV 
Sbjct: 113 DTRAAIKFLR--KIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVT 170

Query: 185 VNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
            ++L+   C    +   AL  LN  V K ++P+  ++ IL++   KEG V+EA      M
Sbjct: 171 YSTLIYGFCI-VGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVM 229

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           ++       +V+ Y T +       +V +A      M      P +  ++  ++   K+ 
Sbjct: 230 LK--ACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIK 287

Query: 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
               A+ L+  M++    FP  + +N I +   K K         H +     QP     
Sbjct: 288 RVDKALNLFKEMIL--SRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTL 345

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
              I       +      +   IL+ G  P   + N L+ GL   G++     F +++L 
Sbjct: 346 NILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLA 405

Query: 424 RRILIYEVTMHKL 436
           +   + +V+   L
Sbjct: 406 QGFQLNQVSYATL 418



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 99/205 (48%), Gaps = 5/205 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + + ++++   K+   ++  N  + M +  ++    T++S+ D  C +G+        D 
Sbjct: 588 HTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDE 647

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M   G   DV+  NSL+  +C+      +A+   N++K + + P+  +F ILL+G  K G
Sbjct: 648 MRDRGQPADVITYNSLIDGLCK-NGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGG 706

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +++A + F +++ +  ++ + V  Y   +    +   ++EAL  L  M+   C P    
Sbjct: 707 RLKDAQEVFQDLLTK-GYHLD-VYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVT 764

Query: 292 FSNALDILVKLNDSTHAVQLWDIMM 316
           F   ++ L K +++  A +L   M+
Sbjct: 765 FDIIINALFKKDENDKAEKLLRQMI 789



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 113/262 (43%), Gaps = 11/262 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +++N+M++   K  R ++  N  + M       +  F  I DS+     Y  AV     +
Sbjct: 274 HSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRL 333

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
            + G++ D+  +N L++  C    Q +     L ++ K+   P   +   L++G   +G 
Sbjct: 334 ELKGIQPDLFTLNILINCFCHM-GQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQ 392

Query: 233 VEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           V++A     +++ + F+ N    ++Y T +  + +      A+K LR + G    P ++ 
Sbjct: 393 VKKALHFHDKLLAQGFQLNQ---VSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEM 449

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S  +D L K    + A  L+  M V  G   D +TY+ +        ++ E     +EM
Sbjct: 450 YSTIIDALCKYQLVSEAYGLFSEMTV-KGISADVVTYSTLIYGFCIVGKLKEAIGLLNEM 508

Query: 352 IKNEWQPTPLNCATAITMLLDA 373
           +     P         T+L+DA
Sbjct: 509 VLKTINPD----VRTYTILVDA 526



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 3/142 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RGQ      +N ++D L KNG  ++       MK+ G+  +  TF  + D  C  G+  +
Sbjct: 651 RGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKD 710

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILL 224
           A   F  +   G   DV   N ++   C+Q      AL  L+++++    P+  +F I++
Sbjct: 711 AQEVFQDLLTKGYHLDVYIYNVMIYGHCKQ-GLLEEALTMLSKMEENGCIPNAVTFDIII 769

Query: 225 EGWEKEGNVEEANKTFGEMVER 246
               K+   ++A K   +M+ R
Sbjct: 770 NALFKKDENDKAEKLLRQMIAR 791


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 154/369 (41%), Gaps = 41/369 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   ++ ++  L K    ++    +  M ++GV+ +  T+ SI   YC +G+  E
Sbjct: 228 RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKE 287

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     M   GVE DVV  NSL+  +C+    T     F +  K+ + P+  ++  LL+
Sbjct: 288 AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    +  +VD+A+     M+ +  
Sbjct: 348 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILICAYAKQGKVDQAMLVFSKMRQQGL 405

Query: 286 FPTLKFFSNALDILVK-------------------------LNDSTHAVQLWD------- 313
            P    +   + IL K                          N   H++ ++D       
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKE 465

Query: 314 --IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
             + M+  G   D++ +N I +   K  RV E EK F  M++   +P  +  +T I    
Sbjct: 466 LILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 525

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRIL 427
            A + + A ++   ++  G+ P   + N L+ G   + R+ D      EM    ++  I+
Sbjct: 526 LAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDII 585

Query: 428 IYEVTMHKL 436
            Y + +  L
Sbjct: 586 TYNIILQGL 594



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/413 (20%), Positives = 158/413 (38%), Gaps = 89/413 (21%)

Query: 107 RGQRLSPYAWNLMVDVLGKNG------RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           RG+  S Y  N  +  + ++       R+ +M    R   ++   +L T+  +  S C A
Sbjct: 48  RGRGASIYGLNCALADVARHSPAAAVSRYNRM---ARAGADEVTPNLCTYGILIGSCCCA 104

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR-------------------------- 194
           G+ D    +   +   G   D +A   LL  +C                           
Sbjct: 105 GRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFS 164

Query: 195 ---------QENQTSRALEFLNRV---KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
                     EN++  ALE L  +        PD  S+  ++ G+ KEG++++A  T+ E
Sbjct: 165 YNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHE 224

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M++R      +V+ Y + +  L + + +D+A++ L  M      P  + +++ +      
Sbjct: 225 MLDRGIL--PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                A+     M    G  PD +TYN + + L KN R  E  K F  M K   +P    
Sbjct: 283 GQPKEAIGFLKKMHS-DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITT 341

Query: 363 CATAIT------------MLLD---------------------ADEPEI--AIEIWNYIL 387
             T +              LLD                     A + ++  A+ +++ + 
Sbjct: 342 YGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMR 401

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKL 436
           + G+ P   +   ++  L   GR+ D  R+ E+M++ R+    ++Y   +H L
Sbjct: 402 QQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL 454



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/353 (20%), Positives = 151/353 (42%), Gaps = 18/353 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N+++  L    R ++    +++M +DG    P   ++ ++ + +   G  D+A  ++
Sbjct: 163 FSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTY 222

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  +VV  +S+++A+C+ +    +A+E L   VK  V P+  ++  ++ G+  
Sbjct: 223 HEMLDRGILPNVVTYSSIIAALCKAQ-AMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCS 281

Query: 230 EGNVEEA----NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            G  +EA     K   + VE     P+ V+ Y + +  L +  +  EA K    M     
Sbjct: 282 SGQPKEAIGFLKKMHSDGVE-----PD-VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGL 335

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P +  +   L              L D +MV +G  P+   ++++     K  +V +  
Sbjct: 336 KPEITTYGTLLQGYATKGALVEMHGLLD-LMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             F +M +    P  +   T I +L  +   E A+  +  +++  + P     N L+  L
Sbjct: 395 LVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSL 454

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD--IFDSLER 456
               +    +    EML+R I +  +  + +  +   E R +    +FD + R
Sbjct: 455 CIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVR 507



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 117/288 (40%), Gaps = 41/288 (14%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           +RLSP    +N ++  L    ++++    +  M + G+ L    F SI DS+C  G+  E
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE 497

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           +   FD+M   GV+ D++                                   +++ L++
Sbjct: 498 SEKLFDLMVRIGVKPDII-----------------------------------TYSTLID 522

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+   G ++EA K    MV      P+ V  Y T +    +  ++++AL   R M+    
Sbjct: 523 GYCLAGKMDEATKLLASMVS-VGMKPDCV-TYNTLINGYCKISRMEDALVLFREMESSGV 580

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P +  ++  L  L +   +  A +L+ + +   G   +  TYN+I   L KN    E  
Sbjct: 581 SPDIITYNIILQGLFQTRRTAAAKELY-VGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           + F  +   + Q         I  LL     + A +++  +  NG++P
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 157/392 (40%), Gaps = 40/392 (10%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G+G  L      ++V V  + GRF  +    R M E G   ++  + +  D  C      
Sbjct: 213 GQGFCLDNATCTVIVRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVK 272

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKI-VDPDGDSFAI 222
           +A    + M   G++ +V    SL++ +C+    T RA   FL  +K     P+  ++ +
Sbjct: 273 QAFYVLEEMVAKGLKPNVYTHTSLINGLCKI-GWTERAFRLFLKLIKSSSYKPNVHTYTV 331

Query: 223 LLEGWEKEGNVEEANKTFGEMVE---------------------------------RFEW 249
           ++ G+ KEG +  A    G MVE                                 R E 
Sbjct: 332 MIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREG 391

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
              ++  Y   +  L +  ++ EA K LR+   +        ++  +    K    T+A+
Sbjct: 392 FQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYAL 451

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
            L++  M  +G  PD  TY  +     + +++ E +K F + +  E  PT     + I  
Sbjct: 452 DLFN-RMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAG 510

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429
                +   A+ ++  +++NG      +   L+ GL    RL + R   E ML++R++  
Sbjct: 511 YCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDKRLVPC 570

Query: 430 EVTMHKLKKAFYNESRSM--RDIFDSLERRCK 459
           EVT   L   +    +++    I D L++R K
Sbjct: 571 EVTPVTLAFEYCRREKAVVAVSILDRLDKRRK 602


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 128/278 (46%), Gaps = 4/278 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++VD L K G  ++  N + VM + GV S + T+ S+ D Y    + ++A   F+ 
Sbjct: 275 YTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNT 334

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M+  GV  DV + + +++ +C+ +        F     K + P+  ++  L++G  K G 
Sbjct: 335 MARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGR 394

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + +A     EM  R +  P  V+ Y + L  L +  QVD+A+  +  +K +   P +  +
Sbjct: 395 ISDAWDLVNEMHNRGQ--PADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTY 452

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +D L K      A  ++  +++  G   D   YN++   L K     E      +M 
Sbjct: 453 TILVDGLCKNGRLKDAQAVYQDLLI-KGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKME 511

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
            N   P  +   T +  L + D+ + A+++   ++  G
Sbjct: 512 DNGCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQG 549



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 158/355 (44%), Gaps = 23/355 (6%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT---FASIFDSYCGAGK 162
            +G  L   ++  +++ L K G        +R  K DG+L  P    + +I DS C    
Sbjct: 162 AKGFHLDQVSYGTLINGLCKTGETRAALQVLR--KIDGLLVQPNVVMYNTIIDSLCKDKL 219

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFA 221
              A      M +  +  DVV   +L+   C    +   A+   N+ + K + PD  +F 
Sbjct: 220 VIHASDLCSEMIVKRIFPDVVTYTTLIYG-CLIVGRLKEAVGLFNQMLLKNIKPDVYTFN 278

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           IL++G  KEG +++A      M++  +    +++ Y + +      KQ ++A      M 
Sbjct: 279 ILVDGLCKEGEMKKARNVLAVMIK--QGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMA 336

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
                P ++ +S  ++ L K      AV L+  M     A P+++TYN + + L+K  R+
Sbjct: 337 RRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMA-PNTVTYNSLIDGLLKYGRI 395

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDA----DEPEIAIEIWNYILENGILPLEAS 397
            +     +EM  N  QP  +      + LLDA     + + AI +   I + GI P   +
Sbjct: 396 SDAWDLVNEM-HNRGQPADV---ITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYT 451

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKL-KKAFYNESRSM 447
              L+ GL   GRL D +   +++L +     + +Y V ++ L K+  ++E+ S+
Sbjct: 452 YTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSL 506



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 135/308 (43%), Gaps = 22/308 (7%)

Query: 164 DEAVMSFD-VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFA 221
           D+AV SF+ ++ M    Q +   N +LS++ +  N    A+ F  +++ K + PD  +F 
Sbjct: 45  DDAVSSFNHILHMRNPVQPIFEFNKILSSLVKL-NHFHTAISFSKQMELKQIQPDLFTFN 103

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFL 277
           IL+  +   G++  A     ++  +  ++P+ V      + TLI+G     +V EAL F 
Sbjct: 104 ILINCFCHLGHLNFAFSVLAKIF-KLGFHPDTVT-----ITTLIKGLCLNGKVREALHFH 157

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW---DIMMVFHGAFPDSLTYNMIFEC 334
             +  +        +   ++ L K  ++  A+Q+    D ++V     P+ + YN I + 
Sbjct: 158 DDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQ----PNVVMYNTIIDS 213

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L K+K V        EMI     P  +   T I   L     + A+ ++N +L   I P 
Sbjct: 214 LCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPD 273

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY--NESRSMRDIFD 452
             + N L+ GL   G +   R     M+ + +    VT + L   ++   +      +F+
Sbjct: 274 VYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFN 333

Query: 453 SLERRCKT 460
           ++ RR  T
Sbjct: 334 TMARRGVT 341



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 61/313 (19%), Positives = 121/313 (38%), Gaps = 38/313 (12%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR------------ 194
           L TF  + + +C  G  + A      +   G   D V + +L+  +C             
Sbjct: 99  LFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHD 158

Query: 195 ----------------------QENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEG 231
                                 +  +T  AL+ L ++   +V P+   +  +++   K+ 
Sbjct: 159 DVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDK 218

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V  A+    EM+ +  + P+ V+ Y T +   +   ++ EA+     M  +N  P +  
Sbjct: 219 LVIHASDLCSEMIVKRIF-PD-VVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYT 276

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           F+  +D L K  +   A  +  + M+  G   + +TYN + +     K+ ++    F+ M
Sbjct: 277 FNILVDGLCKEGEMKKARNVLAV-MIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTM 335

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
            +    P   + +  I  L      + A+ ++  +    + P   + N L+ GL   GR+
Sbjct: 336 ARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRI 395

Query: 412 SDVRRFAEEMLNR 424
           SD      EM NR
Sbjct: 396 SDAWDLVNEMHNR 408


>gi|212274591|ref|NP_001130971.1| GTP binding protein [Zea mays]
 gi|194690592|gb|ACF79380.1| unknown [Zea mays]
 gi|413947420|gb|AFW80069.1| GTP binding protein [Zea mays]
          Length = 535

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 109/474 (22%), Positives = 196/474 (41%), Gaps = 91/474 (19%)

Query: 53  ARIICEILAHASSD--DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--G 108
           A  + ++L   S+D  D+  AL    +    D++  VLQ    +   A+ FF WA    G
Sbjct: 80  ASQVLKVLKSTSADNTDLSGALHQFAVHMDEDIILMVLQKQRSNWQVALAFFNWAATLPG 139

Query: 109 QRLSPYAWNLMVDVLGKNGR---FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
                 A+  M+D+LG+  +     Q+++ +   +   V++   FA + + Y GA K  E
Sbjct: 140 YAHGSRAYTEMLDILGRMKKVRHMRQLFDEIPEERRQVVVTNKMFAVLLNRYAGAHKVQE 199

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD-GDSFAILL 224
           A+  F +   +G E D+V    LL ++CR ++      E L R KK   P    S+ I+L
Sbjct: 200 AIEVFYLRKDYGFELDLVGFQILLMSLCRYKH--VEEAEALFREKKDEFPHVTKSWNIIL 257

Query: 225 EGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--K 281
            GW  +G++ +A + + +++  + E +   +  + TF+  L +  ++  A+K  + M  K
Sbjct: 258 NGWCVKGSLRDAQRIWNDIIASKVERD---LFTFGTFINALAKNGRISAAVKLFKQMWEK 314

Query: 282 GEN-------------CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           G N             CF   K    AL+I  ++ND                   D  TY
Sbjct: 315 GINPDVAICNCIIDQLCFK--KKIPEALEIFGEMNDRLCQA--------------DVATY 358

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI-------- 380
           N + + + K KR+ +V +   +M   E +  P N  T   +L   ++P+  I        
Sbjct: 359 NTLIKYMCKIKRMEKVYELLDDM---EAKGCPPNNRTYSYILKTTEKPKDVIALMQRMER 415

Query: 381 ---------------------------EIWNYILENGILPLEASANELLVGLRNLGRLSD 413
                                      +IW+ +   G  P + S   ++ GL + G+L +
Sbjct: 416 TGCKLDSDIYNLILNLYIKWKYEKGMQQIWDEMERRGSGPDQRSFTIMVHGLHSQGKLDE 475

Query: 414 VRRFAEEMLNR--------RILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 459
             ++   M +R        +IL+  + M K   A  ++S SM      L+ R +
Sbjct: 476 ALQYYTTMKSRGMIPEPRTKILVKAMHMKKDGAATEDDSASMAGKHLKLDHRSR 529


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 145/327 (44%), Gaps = 14/327 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   + + + +++D L K  + ++    +  M E G++ S+ T+ ++ D YC  G  D+
Sbjct: 328 KGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDD 387

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A    D+M  +    +    N L+  +C++  +  +A+  LN+ +++ + P   ++  L+
Sbjct: 388 AFEILDLMESNSCGPNTRTYNELICGLCKKR-KVHKAMALLNKMLERKLSPSLITYNSLI 446

Query: 225 EGWEKEGNVEEANKTFGEMVERF----EWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            G  K  ++E A +    M E      +W       Y  F+ TL +  +V+EA      +
Sbjct: 447 HGQCKVNDLESAYRLLSLMNENGLVPDQWT------YSVFIDTLCKEGRVEEAGTLFDSV 500

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
           K +        ++  +D   K+     A  L +  M+     P+S TYN++ E L K K+
Sbjct: 501 KAKGVKANEVIYTALIDGYCKVGKIDVAYSLLE-RMLNDACLPNSYTYNVLIEGLCKEKK 559

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           + E      +M+    +PT +     I  +L     + A++++N+++  G  P   +   
Sbjct: 560 MKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTA 619

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRIL 427
            L    + G L +V     +M    IL
Sbjct: 620 FLHAYFSQGMLEEVDDVIAKMNEEGIL 646



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 131/288 (45%), Gaps = 8/288 (2%)

Query: 110 RLSP--YAWNLMVDVLGKNGRF-EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           ++SP  Y +N MV+   K G   E    A ++++        T+ S+   +C     D A
Sbjct: 189 QISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNA 248

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLE 225
              F +M   G +++ V+  +L+  +C +  + + AL+ F +  +    P   ++ +L+ 
Sbjct: 249 YEVFLIMPQKGCQRNEVSYTNLIHGLC-EAGRINEALKLFADMTEDNCCPTVRTYTVLIY 307

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
                G   EA   F EM E+      +V  Y   +  L +  ++DEA K L  M  +  
Sbjct: 308 ALSGSGRKVEALNLFNEMKEK--GCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGL 365

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P++  ++  +D   K      A ++ D+M   +   P++ TYN +   L K ++VH+  
Sbjct: 366 IPSVVTYNALIDGYCKEGMIDDAFEILDLMES-NSCGPNTRTYNELICGLCKKRKVHKAM 424

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
              ++M++ +  P+ +   + I      ++ E A  + + + ENG++P
Sbjct: 425 ALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVP 472



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 104/273 (38%), Gaps = 3/273 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++ + YC  G   EA +    +   G+  D     SL+   CR +   +    FL  
Sbjct: 196 TFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIM 255

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            +K    +  S+  L+ G  + G + EA K F +M E     P  V  Y   +  L    
Sbjct: 256 PQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTED-NCCPT-VRTYTVLIYALSGSG 313

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +  EAL     MK + C P +  ++  +D L K N    A ++    M   G  P  +TY
Sbjct: 314 RKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLS-EMSEKGLIPSVVTY 372

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N + +   K   + +  +    M  N   P        I  L    +   A+ + N +LE
Sbjct: 373 NALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE 432

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
             + P   + N L+ G   +  L    R    M
Sbjct: 433 RKLSPSLITYNSLIHGQCKVNDLESAYRLLSLM 465



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 126/362 (34%), Gaps = 78/362 (21%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMSFDV 172
           + +++ +D L K GR E+       +K  GV +    + ++ D YC  GK D A    + 
Sbjct: 475 WTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLER 534

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M       +    N L+  +C+++     +      +   V P   ++ IL+    K+G 
Sbjct: 535 MLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGA 594

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE-------------------- 272
            + A K F  MV    + P+ V  Y  FL        ++E                    
Sbjct: 595 FDHALKVFNHMVS-LGYQPD-VCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTY 652

Query: 273 ---------------ALKFLRVMKGENCFPTLKFFSNALDILVKLN-----------DST 306
                          A  FL+ M    C P+L   S  +  L   N           DS 
Sbjct: 653 TVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSV 712

Query: 307 HAVQLWDIM-----------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             V   DI                  MV HG   D   Y  +     + +R+ E +   H
Sbjct: 713 SNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVH 772

Query: 350 EMIKNEWQPTP------LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
            M +    P+       L+C   + +  +A      + + + ++ENG+LPL  S   L+ 
Sbjct: 773 HMKERGMSPSEDIYNSLLDCCCKLGVYAEA------VRLVDAMVENGLLPLLESYKLLVC 826

Query: 404 GL 405
           GL
Sbjct: 827 GL 828


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 148/309 (47%), Gaps = 6/309 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +++++D L K GR ++       MK  G++  + +++++   +C AGK+D++   FD M
Sbjct: 239 TYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEM 298

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGN 232
              GV+ D+V  + L+  +C+ E + + A + L   +++ + P+  ++  L++G+   G+
Sbjct: 299 VDQGVQPDMVTFSVLIDTLCK-EGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGD 357

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +  A + F  M  +    P+ + +Y T +    +  +V EA+     M      P +  +
Sbjct: 358 LNSARELFLSMPSK-GLEPDEI-SYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTY 415

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
              L  L +      A +L+ +M  + G   +S  Y +  + L KN  + E  + F+E+ 
Sbjct: 416 GTLLKGLFQKGKVGDAKKLFGVMKTY-GVSANSQIYGIFLDGLCKNDCLFEAMELFNELK 474

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
              ++    N +  I  L  A + E A E++  + + G+ P   + N ++ G   +G++ 
Sbjct: 475 SYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVD 534

Query: 413 DVRRFAEEM 421
           +     E+M
Sbjct: 535 NANILFEKM 543



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 135/301 (44%), Gaps = 4/301 (1%)

Query: 127 GRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAV 185
           G+++Q  +    M + GV   + TF+ + D+ C  GK  EA    +VM   G+  +++  
Sbjct: 286 GKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITY 345

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           NSL+   C   +  S    FL+   K ++PD  S+  L+ G+ K   V+EA   + EM++
Sbjct: 346 NSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQ 405

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
                  +V  Y T L  L +  +V +A K   VMK        + +   LD L K +  
Sbjct: 406 V--GKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCL 463

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
             A++L++ +  ++    +   Y+ + + L K  ++    + F ++ +   QP  +    
Sbjct: 464 FEAMELFNELKSYNFKL-NIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNI 522

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
            I       + + A  ++  + ENG  P   + N LL G     +L +V +   +M+ + 
Sbjct: 523 MIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKD 582

Query: 426 I 426
           +
Sbjct: 583 V 583



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 133/286 (46%), Gaps = 6/286 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +++++D L K G+  +    + VM + G++ +L T+ S+ D +C  G  + A   F  M
Sbjct: 309 TFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSM 368

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G+E D ++  +L++  C+   +   A+   N + ++   P+  ++  LL+G  ++G 
Sbjct: 369 PSKGLEPDEISYTTLINGYCKTW-KVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGK 427

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V +A K FG M          +  Y  FL  L +   + EA++    +K  N    ++ +
Sbjct: 428 VGDAKKLFGVMKTYGVSANSQI--YGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENY 485

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           S  +D L K      A +L++  +   G  PD +TYN++     K  +V      F +M 
Sbjct: 486 SCLIDGLCKAGKLETAWELFE-KLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKME 544

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
           +N   P  +   T +    + ++ E  I++ + +++  + P  AS 
Sbjct: 545 ENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASC 590



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 143/332 (43%), Gaps = 9/332 (2%)

Query: 98  AVDFFRWAGRGQRLSPYA-WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A  FF    R   + P + +N ++  L K   + Q+++    M+  G+   L T + + +
Sbjct: 75  AFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILAN 134

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
             C   +  EA+ +   +   G   +VV   +L+  +C  E++ S A     R++K+   
Sbjct: 135 CLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLC-MEHRISEATRLFLRMQKLGCT 193

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMV---ERFEWNPE-HVLAYETFLITLIRGKQV 270
           P+  ++  L++G  + GNV  A K   EM+    ++  N +  V+ Y   +  L +  + 
Sbjct: 194 PNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRE 253

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
           DEA +    MK +   P +  +S  +           +  L+D  MV  G  PD +T+++
Sbjct: 254 DEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFD-EMVDQGVQPDMVTFSV 312

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           + + L K  +V E +K    MI+    P  +   + I       +   A E++  +   G
Sbjct: 313 LIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKG 372

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
           + P E S   L+ G     ++ +      EML
Sbjct: 373 LEPDEISYTTLINGYCKTWKVKEAMNLYNEML 404



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 135/316 (42%), Gaps = 13/316 (4%)

Query: 152 SIFDSYCGAGKYD--EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           S+F   C  G     +A   FD+M        + + N LL  + +  N  S+     N +
Sbjct: 59  SLFLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKI-NHYSQLFSLYNEM 117

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +   + PD  + +IL         V EA      ++ R  + P +V+ Y T +  L    
Sbjct: 118 RLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRR-GYIP-NVVTYTTLIKGLCMEH 175

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-----P 323
           ++ EA +    M+   C P    +   +  L +  +   A++L   M+     +     P
Sbjct: 176 RISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKP 235

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
             +TY++I + L K  R  E ++ F EM      P  ++ +T I     A + + +  ++
Sbjct: 236 GVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLF 295

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--Y 441
           + +++ G+ P   + + L+  L   G++++ ++  E M+ R I+   +T + L   F   
Sbjct: 296 DEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMV 355

Query: 442 NESRSMRDIFDSLERR 457
            +  S R++F S+  +
Sbjct: 356 GDLNSARELFLSMPSK 371


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 152/336 (45%), Gaps = 12/336 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L+ + + L++  L K GR       +  M   GV+ S+ T+ ++ D YC +G+  +A
Sbjct: 279 GCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDA 338

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLE 225
           +    +M  +G   D    NSL+  +C    +   A E LN  + +   P   +F  L+ 
Sbjct: 339 LGIKALMEQNGCNPDDWTYNSLIYGLC--GGKLDEAEELLNGAIARGFTPTVITFTNLIN 396

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVL-AYETFLITLIRGKQVDEALKFLRVMKGEN 284
           G+ K   +++A +    M+     N +  L AY   +  LI+  ++ EA + L  M    
Sbjct: 397 GYCKAERIDDALRVKSNMISS---NCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANG 453

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P +  +++ +D   K+     A++++ +M    G  P++ TY  +   LI++K++H+ 
Sbjct: 454 LAPNVVTYTSIIDGYCKVGMVGAALEVFKLME-HEGCHPNAWTYGSLIYGLIQDKKLHKA 512

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
                +M ++   P  +   T I       E + A  ++  + +NG+ P E + N L   
Sbjct: 513 MALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDA 572

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           L   GR  +   F   ++ + +++ +VT   L   F
Sbjct: 573 LCKSGRAEEAYSF---LVRKGVVLTKVTYTSLVDGF 605



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 140/346 (40%), Gaps = 56/346 (16%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           A+N++ D L K+GR E+ ++ +  +++  VL+  T+ S+ D +  AG  D A +  + M 
Sbjct: 565 AYNVLTDALCKSGRAEEAYSFL--VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMV 622

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK------KIV--------------- 213
             G + D+   + LL A+C+Q+ + + AL  L+++        IV               
Sbjct: 623 NEGCKADLYTYSVLLQALCKQK-KLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKH 681

Query: 214 ---------------DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
                           P   ++ + +  + K G +EEA    GEM ER    P+ V+ Y 
Sbjct: 682 DHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEM-ERDGVTPD-VVTYN 739

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN-DSTHAV-------- 309
            F+        +D A   L+ M   +C P    +   L   +K++  + H V        
Sbjct: 740 IFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNW 799

Query: 310 ----QLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
                +W ++  M+ HG  P  +TY+ I     K  R+ E       M+  +  P     
Sbjct: 800 IELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIY 859

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
              I    D      A+     ++E G  P   S + L+VGL + G
Sbjct: 860 TMLIKCCCDIKLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEG 905



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 128/322 (39%), Gaps = 7/322 (2%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           R  G+   LSP  +NL +  L +    E M      + ++G+L    T+ ++  +YC  G
Sbjct: 134 RVGGKRLVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKG 193

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
               A   F ++   G++ D    N+LL   CR  +        +         +  S+ 
Sbjct: 194 SLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYT 253

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           IL++G  +   V EA      MV   +    ++  Y   +  L +  ++ +A   L  M 
Sbjct: 254 ILIQGLCEARCVREALVLVFMMVH--DGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMP 311

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
                P++  ++  +D   K      A+ +   +M  +G  PD  TYN +   L   K +
Sbjct: 312 LRGVVPSVWTYNAMIDGYCKSGRMKDALGI-KALMEQNGCNPDDWTYNSLIYGLCGGK-L 369

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI-WNYILENGILPLEASANE 400
            E E+  +  I   + PT +     I     A+  + A+ +  N I  N  L L+A    
Sbjct: 370 DEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVL 429

Query: 401 LLVGLRNLGRLSDVRRFAEEML 422
           + V ++   RL + +    EM 
Sbjct: 430 INVLIKKC-RLKEAKETLNEMF 450


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 161/378 (42%), Gaps = 25/378 (6%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           Y     A D F   A +GQ    +++N+M++     G    M +   +M  DG+     T
Sbjct: 340 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 399

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +  +Y   G  D+A++ F+ M  HGV+ DVV   ++++A+CR         +F   +
Sbjct: 400 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 459

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + V PD  ++  L++G+   G++ +A +   E++     N  H       L  +     
Sbjct: 460 DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN----NGMH-------LDIVFFSSI 508

Query: 270 VDEALKFLRVMKGENCF---------PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           ++   K  RVM  +N F         P    ++  +D    +     A++++D  MV  G
Sbjct: 509 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFD-AMVSAG 567

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             P+ + Y  +     K  R+ E    F EM++   +P+ +  +  I  L +A     A 
Sbjct: 568 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAK 627

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
             ++ + E+GI     + N +L GL       +     +E+    + I  +T++ +    
Sbjct: 628 MKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGM 687

Query: 441 YNESR--SMRDIFDSLER 456
           +   R    +D+F S+ R
Sbjct: 688 FQTRRVEEAKDLFASISR 705



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 146/316 (46%), Gaps = 12/316 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++++++  L   G+  Q  + +R+M E G +  P    + ++ D +   G  ++A   F
Sbjct: 186 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 245

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  D+V  NS++ A+C+      +A  FL + V K V P+  ++  L+ G+  
Sbjct: 246 KEMVQRGIPPDLVTYNSVVHALCKAR-AMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSS 304

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL--RVMKGENCFP 287
            G  +EA + F EM  R    P+ V+     + +L +  ++ EA        MKG+N  P
Sbjct: 305 TGQWKEAVRVFKEM-RRHSILPD-VVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN--P 360

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
            +  ++  L+             L+D+M+   G  PD  T+N++ +       + +    
Sbjct: 361 DVFSYNIMLNGYATKGCLVDMTDLFDLML-GDGIAPDFYTFNVLIKAYANCGMLDKAMII 419

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           F+EM  +  +P  +   T I  L    + + A+E +N +++ G+ P + + N L+ G   
Sbjct: 420 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCT 479

Query: 408 LGRLSDVRRFAEEMLN 423
            G L   +    E++N
Sbjct: 480 HGSLLKAKELISEIMN 495



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/384 (20%), Positives = 145/384 (37%), Gaps = 56/384 (14%)

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLV-HEVLQLSYDSPSSAVD----FFRWAGRGQR 110
           +C+      + D+   +A  G    PD+  + ++   Y +    VD    F    G G  
Sbjct: 337 LCKYGKIKEARDVFDTMAMKG--QNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIA 394

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
              Y +N+++      G  ++       M++ GV   + T+ ++  + C  GK D+A+  
Sbjct: 395 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEK 454

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQT---------------------SRALEFLNR 208
           F+ M   GV  D  A N L+   C   +                       S  +  L +
Sbjct: 455 FNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 514

Query: 209 VKKIVD--------------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
           + +++D              PD   + +L++G+   G +E+A + F  MV        +V
Sbjct: 515 LGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVS--AGIEPNV 572

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           + Y T +    +  ++DE L   R M      P+   +S  +D L +   +  A      
Sbjct: 573 VGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPA------ 626

Query: 315 MMVFH-----GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
            M FH     G   D  TYN++   L KN+   E    F E+     +   +   T I  
Sbjct: 627 KMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDG 686

Query: 370 LLDADEPEIAIEIWNYILENGILP 393
           +      E A +++  I  + ++P
Sbjct: 687 MFQTRRVEEAKDLFASISRSRLVP 710



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 3/206 (1%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + D YC  GK ++A+  FD M   G+E +VV   +L++  C+          F   +++ 
Sbjct: 543 LMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRG 602

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + P    ++I+++G  + G    A   F EM E        +  Y   L  L + +  DE
Sbjct: 603 IKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTE--SGIAMDICTYNIVLRGLFKNRCFDE 660

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A+   + ++  N    +   +  +D + +      A  L+   +      P  +TY+++ 
Sbjct: 661 AIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLF-ASISRSRLVPSVVTYSIMI 719

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQP 358
             LIK   V E E  F  M     +P
Sbjct: 720 TNLIKEGLVEEAEDMFSSMQNAGCEP 745



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 115/276 (41%), Gaps = 16/276 (5%)

Query: 190 SAICRQENQTSRALEFLNRVK------KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           SA CR  +  + A+   NR        +++ P   ++AIL++   +    E A   FG++
Sbjct: 83  SAACR--SGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQL 140

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKL 302
           + R       ++A    L      K+ DEAL  L     E  C P +  +S  L  L   
Sbjct: 141 L-RTGLRVNIIIA-NHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQ 198

Query: 303 NDSTHAVQLWDIMMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
             S  A  L   MM   GA   P+ + YN + +   K   V++    F EM++    P  
Sbjct: 199 GKSGQADDLLR-MMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDL 257

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 420
           +   + +  L  A   + A      ++   +LP   + N L+ G  + G+  +  R  +E
Sbjct: 258 VTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 317

Query: 421 MLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSL 454
           M    IL   VT+  L  +   Y + +  RD+FD++
Sbjct: 318 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM 353



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 106/271 (39%), Gaps = 8/271 (2%)

Query: 43  HLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY---DSPSSAV 99
           HLD  + SS    +C++     + +I       G+ P   +V+ +L   Y        A+
Sbjct: 499 HLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA-VVYNMLMDGYCLVGKMEKAL 557

Query: 100 DFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
             F      G   +   +  +V+   K GR ++  +  R M + G+  S   ++ I D  
Sbjct: 558 RVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 617

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
             AG+   A M F  M+  G+  D+   N +L  + +          F       V  + 
Sbjct: 618 FEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINI 677

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +   +++G  +   VEEA   F   + R    P  V+ Y   +  LI+   V+EA    
Sbjct: 678 ITLNTMIDGMFQTRRVEEAKDLFAS-ISRSRLVPS-VVTYSIMITNLIKEGLVEEAEDMF 735

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             M+   C P  +  ++ +  L+K N+   A
Sbjct: 736 SSMQNAGCEPNSRLLNHVVRELLKKNEIVRA 766


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 160/356 (44%), Gaps = 15/356 (4%)

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
           ++ S + +N ++  L   G  +++ +    M+ +G++ ++ T+ ++      +G+ + A 
Sbjct: 298 KKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQ 357

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
             F  M   G+  DV+  NSLL+  C+  NQ    L F +  +  + P   ++ IL++G+
Sbjct: 358 AKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGY 417

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL----KFLRVMKGE 283
            + G++EEA +   EMVE      +  L        L++G     +L    +F   M  +
Sbjct: 418 CRLGDLEEARRLKEEMVE------QGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSK 471

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
              P    ++  +   + L D + + QL +++M+  G   D++TYN++ + L K   + +
Sbjct: 472 GLRPDCFAYNTRICAEITLGDISKSFQLREVIML-EGISSDTVTYNILIDGLCKTGNLKD 530

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
            E+   +MI N  QP  +     I    +      A + +N ++ +G+ P   +   ++ 
Sbjct: 531 AEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIH 590

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM---RDIFDSLER 456
                G L     +  +ML   +   E+T + L  A     R+    R  ++ LER
Sbjct: 591 AYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYEMLER 646



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 140/314 (44%), Gaps = 6/314 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N M+  L ++G+ E        M+  G+L  + T+ S+ + YC AG   EA++ F  + 
Sbjct: 340 YNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLR 399

Query: 175 MHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             G+   V+  N L+   CR  + + +R L+    V++   PD  ++ IL++G     ++
Sbjct: 400 RAGLAPTVLTYNILIDGYCRLGDLEEARRLKE-EMVEQGCLPDVYTYTILMKGSHNVCSL 458

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
               + F EM+ +    P+   AY T +   I    + ++ +   V+  E        ++
Sbjct: 459 AMTREFFDEMLSK-GLRPD-CFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYN 516

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D L K  +   A +L  + M+ +G  PD +TY  +     +   + E  KFF++MI 
Sbjct: 517 ILIDGLCKTGNLKDAEELM-MQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMIS 575

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           +   P+ +     I           A   +  +LE G+ P E + N L+  L  +GR   
Sbjct: 576 DGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQL 635

Query: 414 VRRFAEEMLNRRIL 427
             R   EML R ++
Sbjct: 636 AYRHFYEMLERGLV 649



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 121/291 (41%), Gaps = 10/291 (3%)

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAI---CRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           +F  M+ HGV  DV   N +L  +    R ++ ++   E L   +  ++P   ++  LL+
Sbjct: 183 AFREMASHGVAPDVKDCNKVLRVLRDAARWDDMSAVHAEML---QLGIEPSIVTYNTLLD 239

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + KEG  ++ +    EM  R      + + Y   +  L R   ++EA + +  M+    
Sbjct: 240 SFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEMRLSK- 298

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
                F  N L   +        V    + M   G  P  +TYN +   L+++ ++   +
Sbjct: 299 -KASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQ 357

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             F EM      P  +   + +     A   + A+ ++  +   G+ P   + N L+ G 
Sbjct: 358 AKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGY 417

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE-SRSM-RDIFDSL 454
             LG L + RR  EEM+ +  L    T   L K  +N  S +M R+ FD +
Sbjct: 418 CRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEM 468



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 128/302 (42%), Gaps = 34/302 (11%)

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ--ENQTSRALEFLNRVKKIVDPDG 217
           A ++D+       M   G+E  +V  N+LL +  ++  +++    L+ +        P+ 
Sbjct: 209 AARWDDMSAVHAEMLQLGIEPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPND 268

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEM-----VERFEWNPEHVLAYETFLIT--LIRG--K 268
            ++ +++ G  ++G +EEA +   EM        F +NP         LIT  L RG  K
Sbjct: 269 VTYNVVIAGLARKGYLEEAAELVEEMRLSKKASSFTYNP---------LITGLLARGFVK 319

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +VD+       M+ E   PT+  ++  +  L++ +    A Q   + M   G  PD +TY
Sbjct: 320 KVDD---LQLEMENEGIMPTVVTYNAMIHGLLQ-SGQIEAAQAKFVEMRAMGLLPDVITY 375

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N +     K     E    F ++ +    PT L     I       + E A  +   ++E
Sbjct: 376 NSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVE 435

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----------LIYEVTMHKLKK 438
            G LP   +   L+ G  N+  L+  R F +EML++ +          +  E+T+  + K
Sbjct: 436 QGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISK 495

Query: 439 AF 440
           +F
Sbjct: 496 SF 497



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 101/249 (40%), Gaps = 14/249 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS---FDV 172
           +N+++D   + G  E+       M E G L  P   +      G+       M+   FD 
Sbjct: 410 YNILIDGYCRLGDLEEARRLKEEMVEQGCL--PDVYTYTILMKGSHNVCSLAMTREFFDE 467

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR---VKKIVDPDGDSFAILLEGWEK 229
           M   G+  D  A N+    IC +      +  F  R   + + +  D  ++ IL++G  K
Sbjct: 468 MLSKGLRPDCFAYNT---RICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCK 524

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            GN+++A +   +M+      P+  + Y   +        + EA KF   M  +   P+ 
Sbjct: 525 TGNLKDAEELMMQMISN-GLQPD-CITYTCLIHAHCERGFLREARKFFNDMISDGLPPSA 582

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             ++  +    +   + ++   W   M+  G  P+ +TYN++   L +  R     + F+
Sbjct: 583 VTYTVIIHAYCR-RGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFY 641

Query: 350 EMIKNEWQP 358
           EM++    P
Sbjct: 642 EMLERGLVP 650


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 115/286 (40%), Gaps = 14/286 (4%)

Query: 130 EQMWNAVRVMKEDGVLSLP----------TFASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
             + N  RVM    V +L           TF S+ D YC  GK D+A    D M   G E
Sbjct: 561 HSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTE 620

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
            DVV  ++L++   +        + F   + K V P   +++++L+G  + G    A K 
Sbjct: 621 PDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKM 680

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           F EM+E        +  Y   L  L R    DEA+     +   N    +   +  +  L
Sbjct: 681 FHEMIE--SGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHAL 738

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            K+     A  L+  +    G  P++ TY ++   L+K   V E +  F  M K    P+
Sbjct: 739 YKVKRREEAHDLFASVSA-SGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPS 797

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
                  I MLL   E  +    +   ++  I+ LEAS   LL+ L
Sbjct: 798 SRLLNDIIRMLLQKGEI-VKAGYYMSKVDGTIISLEASTTSLLISL 842



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 126/298 (42%), Gaps = 4/298 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++   Y   G++ EA   F  M+  G+  D+V  NSL+ ++C+ +     A  F + 
Sbjct: 344 TYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSI 403

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K   PD  S++ILL G+  EG   + N  F  M +       H   +   +    +  
Sbjct: 404 ATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSH--CFNILINAHAKRG 461

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            +DEAL     M+G+   P +  ++  +  L ++     A++     M+  G  P+++ Y
Sbjct: 462 MMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLS-QMISIGLKPNTVVY 520

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEW-QPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           + + +    +  + + ++   EM+     +P     ++ I  L +      A +++N ++
Sbjct: 521 HSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVI 580

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             G  P   + N L+ G   +G++       + M++       VT   L   ++   R
Sbjct: 581 HIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGR 638



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 142/349 (40%), Gaps = 18/349 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFD 171
           +++N ++  L    R ++  + + R+ K DG    + ++  +       G+  +A   F+
Sbjct: 237 FSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFN 296

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M   GV  +VV  NS++ A+C+        L         + PD  ++  ++ G+   G
Sbjct: 297 EMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLG 356

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             +EA K F EM    E     ++ + + + +L + K+  EA +    +  +   P +  
Sbjct: 357 RWKEAAKMFKEMTR--EGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIIS 414

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFH-----GAFPDSLTYNMIFECLIKNKRVHEVEK 346
           +S      + L+      +  D+  +FH     G   DS  +N++     K   + E   
Sbjct: 415 YS------ILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALL 468

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            F EM      P  +  AT I  L        A+E  + ++  G+ P     + L+ G  
Sbjct: 469 IFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFC 528

Query: 407 NLGRLSDVRRFAEEMLNRRILIYEVT-MHKLKKAFYNESRSM--RDIFD 452
             G L   +    EM+++ I    +T    +  +  NE R M  +D+F+
Sbjct: 529 THGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFN 577



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 116/289 (40%), Gaps = 17/289 (5%)

Query: 184 AVNSLLSAICRQENQTS------RALEFLNRV------KKIVDPDGDSFAILLEGWEKEG 231
           A+N  L+A+ R  +  +       A+   NR+       ++V     ++ IL++   +  
Sbjct: 120 ALNGFLAALARARDSVACSDAPALAVALFNRICREEAGPRVVPLTVHTYGILMDCCCRAR 179

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK-FLRVMKGENCFPTLK 290
             +     F  ++ R     + ++   TFL  L   K+ DEAL   L  M    C P   
Sbjct: 180 RPDLGPAFFARLL-RAGLRTDGIVT-NTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAF 237

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            ++  +  L   + S  A+ +   M    G  PD ++Y M+   L     + +    F+E
Sbjct: 238 SYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNE 297

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M++    P  +   + +  L  A   + A  +   + +N I P E +   ++ G   LGR
Sbjct: 298 MVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGR 357

Query: 411 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR--DIFDSLERR 457
             +  +  +EM    ++   VT + L  +     RS    +IF S+  +
Sbjct: 358 WKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATK 406



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 100/251 (39%), Gaps = 40/251 (15%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE-------- 196
           L++ T+  + D  C A + D     F  +   G+  D +  N+ L  +C  +        
Sbjct: 163 LTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEALSM 222

Query: 197 ---------------------------NQTSRALEFLNRVKK--IVDPDGDSFAILLEGW 227
                                      +++  AL+ L R+ K     PD  S+ +++ G 
Sbjct: 223 LLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGL 282

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
             EG + +A   F EMV++      +V+ Y + +  L + + +D+A   LR M   +  P
Sbjct: 283 FMEGEISKACNLFNEMVQK--GVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQP 340

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
               ++  +     L     A +++   M   G  PD +T+N + + L K+KR  E  + 
Sbjct: 341 DEVTYTAMIHGYSCLGRWKEAAKMFK-EMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEI 399

Query: 348 FHEMIKNEWQP 358
           FH +     +P
Sbjct: 400 FHSIATKGHKP 410


>gi|255660872|gb|ACU25605.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 484

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 134/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  S ++   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-SSNTXEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M    VE+ + + N+L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELXVERTIKSYNALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN+ F +M  R E +P
Sbjct: 125 ILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MKG N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            +  M   G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VZ-EMKGXGIKPNAITYSTLLPGLCNAEKMSEARVJLKEMMDKYLAPT 289



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + KEG V+E+ K F +M    VER       + +Y   
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELXVER------TIKSYNAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTF-NVMIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++
Sbjct: 241 RLVZEMKGXGIKPNAITYSTLLPGLCNAEKMSEARVJLKEMMDK 284



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 23/181 (12%)

Query: 135 AVRVMKEDGVLSLPTFAS----IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV------- 183
           A  V+K    LS+PT A     + +++C  G+YD+AV   D +    +E+D++       
Sbjct: 310 AADVLKAMIRLSVPTEAGHXGXLIENFCKVGQYDKAVKLLDKL----IEKDIILRPQSTL 365

Query: 184 -----AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
                A N ++  +C    Q  +A   + ++ K+   D  +   L+ G  +EG+ + A +
Sbjct: 366 HLEPSAYNPMIEYLC-NNGQAXKAETLVRQLXKLGVQDPTALNTLIRGHSQEGSPDSAFE 424

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
               M+ R + + E   AY + + + ++  +  +A   L  M   +  P    F + ++ 
Sbjct: 425 LLKIMLRR-KVDSEKX-AYNSLVQSYLKKNEPXDAKAALDSMIENDHLPDSALFRSVMES 482

Query: 299 L 299
           L
Sbjct: 483 L 483


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 140/297 (47%), Gaps = 5/297 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     KYD  +     M + G+  D+   N +++  C    Q S AL  
Sbjct: 84  SIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFC-CCFQVSLALSI 142

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  +   L+ G+ +   V +A     +MVE   + P+ ++AY   + +L
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE-IGYKPD-IVAYNAIIDSL 200

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            + K+V++A  F + ++ +   P +  ++  ++ L   +  + A +L   M +     P+
Sbjct: 201 CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKKITPN 259

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TY+ + +  +KN +V E ++ F EM++    P  +  ++ I  L   D  + A ++++
Sbjct: 260 VITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFD 319

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
            ++  G L    S N L+ G     R+ D  +   EM  R ++   VT + L + F+
Sbjct: 320 LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFF 376



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 129/279 (46%), Gaps = 5/279 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T  S+ + +C   +  +AV   D M   G + D+VA N+++ ++C+ + + + A +F   
Sbjct: 157 TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTK-RVNDAFDFFKE 215

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + +K + P+  ++  L+ G        +A +   +M+++ +  P +V+ Y   L   ++ 
Sbjct: 216 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK-KITP-NVITYSALLDAFVKN 273

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +V EA +    M   +  P +  +S+ ++ L   +    A Q++D +MV  G   D ++
Sbjct: 274 GKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFD-LMVSKGCLADVVS 332

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +     K KRV +  K F EM +       +   T I     A + + A E ++ + 
Sbjct: 333 YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD 392

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
             GI P   + N LL GL + G L       E+M  R +
Sbjct: 393 FFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 431



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/327 (20%), Positives = 137/327 (41%), Gaps = 4/327 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G +    A+N ++D L K  R    ++  + ++  G+  ++ T+ ++ +  C + ++ +A
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
                 M    +  +V+  ++LL A  +          F   V+  +DPD  +++ L+ G
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 304

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
                 ++EAN+ F  MV +       V++Y T +    + K+V++ +K  R M      
Sbjct: 305 LCLHDRIDEANQMFDLMVSK--GCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLV 362

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
                ++  +    +  D   A + +   M F G  PD  TYN++   L  N  + +   
Sbjct: 363 SNTVTYNTLIQGFFQAGDVDKAQEFFS-QMDFFGISPDIWTYNILLGGLCDNGELEKALV 421

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            F +M K E     +   T I  +    + E A  ++  +   G+ P   +   ++ GL 
Sbjct: 422 IFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLC 481

Query: 407 NLGRLSDVRRFAEEMLNRRILIYEVTM 433
             G L +V     +M    ++  + T+
Sbjct: 482 TKGLLHEVEALYTKMKQEGLMKNDCTL 508



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 1/183 (0%)

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
           T +R  ++++A+     M     FP++  F+  L  +VKL      + L   M V  G  
Sbjct: 59  TRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVL-GIR 117

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
            D  T+N++  C     +V        +M+K  ++P  +   + +      +    A+ +
Sbjct: 118 NDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
            + ++E G  P   + N ++  L    R++D   F +E+  + I    VT   L     N
Sbjct: 178 VDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCN 237

Query: 443 ESR 445
            SR
Sbjct: 238 SSR 240



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 10/102 (9%)

Query: 97  SAVDFFRWAGRGQRLSPYAW--NLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASI 153
           S +DFF        +SP  W  N+++  L  NG  E+       M K +  L + T+ ++
Sbjct: 389 SQMDFFG-------ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTV 441

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
               C  GK +EA   F  +S+ G++ D+V   +++S +C +
Sbjct: 442 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTK 483


>gi|255660916|gb|ACU25627.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 484

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 139/290 (47%), Gaps = 15/290 (5%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNL-----MVDVLGKNGRF 129
           ++P+ D  LV+ VL  +  S   A+ FFRW    +R + +  N      ++++LG+  + 
Sbjct: 6   LVPSFDQELVYNVLHGAKTS-EHALQFFRWV---ERSNLFEHNRDTHLKIIEILGRALKL 61

Query: 130 EQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
                 +  M + G+      +  + DSY  AG   E+V  F  M   GVE+ + + ++L
Sbjct: 62  NHARCILLDMPKKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDAL 121

Query: 189 LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
              I R+         F   + + ++P   +F +L+ G+   G V+ AN+ F +M  R E
Sbjct: 122 FKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVLIWGFFLSGKVDTANRFFEDMKSR-E 180

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
            +P+ V+ Y T +    R K++DEA K+   MKG N  PT+  ++  +   V ++    A
Sbjct: 181 ISPD-VVTYNTMINGCYRVKKMDEAEKYFVEMKGRNIEPTVVSYTTLIKGYVSVDQVDDA 239

Query: 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
           ++L + M  + G  P+++TY+ +   L    ++ E +    EM+     P
Sbjct: 240 LRLVEEMKGY-GIKPNAITYSTLLPGLCDAGKMSEAQSILKEMVDKYIAP 288



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 11/226 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K G V+E+ K F +M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELGVER------TIKSYDAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N L     L+        +   M    
Sbjct: 122 FKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTF-NVLIWGFFLSGKVDTANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT ++  T I   +  D+ + A+
Sbjct: 181 ISPDVVTYNTMINGCYRVKKMDEAEKYFVEMKGRNIEPTVVSYTTLIKGYVSVDQVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            +   +   GI P   + + LL GL + G++S+ +   +EM+++ I
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCDAGKMSEAQSILKEMVDKYI 286



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 85/181 (46%), Gaps = 23/181 (12%)

Query: 135 AVRVMKEDGVLSLPT----FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV------- 183
           A  V+K    LS+PT    +  + +++C AG++D+AV   D +    +E+D++       
Sbjct: 310 AADVLKAMIRLSVPTEAGHYGVLIENFCKAGQHDKAVKLLDKL----IEKDIILRPQSTL 365

Query: 184 -----AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
                A N ++  +C    QT++A   + ++ K+   D  +   L+ G  +EG+ + A +
Sbjct: 366 HMEPSAYNPMIEYLC-NNGQTAKAEALVRQLLKLGVQDSTALNTLIRGHSQEGSPDSAFE 424

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
               M+ R + + E   AY++ + + ++  +  +A   L  M   +  P    F + ++ 
Sbjct: 425 LLKIMLRR-KVDSEKS-AYDSLVQSYLKKNEPADAKAALGSMIENDHLPDSSLFRSVMES 482

Query: 299 L 299
           L
Sbjct: 483 L 483


>gi|225431703|ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial [Vitis vinifera]
 gi|296088528|emb|CBI37519.3| unnamed protein product [Vitis vinifera]
          Length = 525

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 112/464 (24%), Positives = 186/464 (40%), Gaps = 66/464 (14%)

Query: 34  RPTRPRFPTHLDAPYISSSARIICEILA--HASSDDIESALACTGIIPTPDLVHEVLQLS 91
           +P      T L +   S  A +I +IL   H     +ES+L   GI  +  LVH+ L   
Sbjct: 34  QPPDDALSTGLPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRL 93

Query: 92  YDSPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLP 148
            +    A+ FF WA      S    ++NL++D+L K  +F+  W  +  M ++ +  +  
Sbjct: 94  RNVSKIALSFFLWAKDQAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTST 153

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN--SLLSAICRQENQTSRALEFL 206
           TF  +      AG   +AV +FD MS   VE+D  + +   LL  + +       A +  
Sbjct: 154 TFRILIRRSVSAGLTRQAVRAFDDMSCF-VEKDADSDDFCYLLDTLSKY-GYVKLASQIF 211

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLI 265
           N+ K   + +   + IL+ GW K   V  A +  GEMVER  E N   V+ Y   L  + 
Sbjct: 212 NQRKFKFEANAKMYTILIYGWCKINRVSIAERLLGEMVERGIEAN---VVTYNVLLNGIC 268

Query: 266 RG----------KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL-WDI 314
           R           + + +A K L  M+ +   P +  +S    I++ +    H  +L  D 
Sbjct: 269 RRASLHPDDRFERTIRDAEKVLDEMRQKGIEPDVTSYS----IVIHVYSRAHKPELTLDK 324

Query: 315 --MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP--LNC------- 363
             MM   G +P   TY  + +CL    R+ + E+   +M+K+   P+    NC       
Sbjct: 325 LRMMKDKGIWPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRG 384

Query: 364 ---------------------------ATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
                                         + M +  +  EI  EIW+ +  +G  P   
Sbjct: 385 RKDSDNALRLYRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLD 444

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           S   L+ GL    +  +   F  EM+ +  L  ++T   L +  
Sbjct: 445 SYTLLIHGLCEKQKWKEACHFFVEMIEKGYLPQKITFETLYRGL 488



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 121/305 (39%), Gaps = 55/305 (18%)

Query: 119 MVDVLGKNGRFE---QMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           ++D L K G  +   Q++N  +   E        +  +   +C   +   A      M  
Sbjct: 194 LLDTLSKYGYVKLASQIFNQRKFKFEANA---KMYTILIYGWCKINRVSIAERLLGEMVE 250

Query: 176 HGVEQDVVAVNSLLSAICRQ-----ENQTSRALEFLNRV-----KKIVDPDGDSFAILLE 225
            G+E +VV  N LL+ ICR+     +++  R +    +V     +K ++PD  S++I++ 
Sbjct: 251 RGIEANVVTYNVLLNGICRRASLHPDDRFERTIRDAEKVLDEMRQKGIEPDVTSYSIVIH 310

Query: 226 GWEKE-----------------------------------GNVEEANKTFGEMVERFEWN 250
            + +                                    G +E+A +   +MV+  +  
Sbjct: 311 VYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVVKCLCSCGRLEDAEELVSDMVK--DGV 368

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHAV 309
                 Y  F       K  D AL+  R MK E +C P +  ++  + + VKLN      
Sbjct: 369 SPSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQ 428

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           ++WD M    GA PD  +Y ++   L + ++  E   FF EMI+  + P  +   T    
Sbjct: 429 EIWDDMKT-SGAGPDLDSYTLLIHGLCEKQKWKEACHFFVEMIEKGYLPQKITFETLYRG 487

Query: 370 LLDAD 374
           L+ +D
Sbjct: 488 LIQSD 492


>gi|125526118|gb|EAY74232.1| hypothetical protein OsI_02112 [Oryza sativa Indica Group]
          Length = 556

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 166/435 (38%), Gaps = 62/435 (14%)

Query: 51  SSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFF-RWAGRGQ 109
           S+A     +L+    +D  ++L   GI P P +  ++       P SA+    RWAG   
Sbjct: 17  SAAAAASTVLSILRGED-PASLPAAGIDPCPAVFQQLRPSLPTVPDSALPALARWAGEAT 75

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169
                     V +L   G F   W  + +        L  FA +   Y   G+   A+ +
Sbjct: 76  ---------AVSLLASRGLFAAAWRLL-LAPSPTPPPLAAFAPLVRRYARLGRAPAALRA 125

Query: 170 FDVMSMHG----VEQDVVAVNSLLS----AICRQENQTSRALEFLNRVKK---IVDPDGD 218
           F  +  H        D+ A  SLL+    A+C+ E     A+E   R ++      PD  
Sbjct: 126 FQFLRRHPDRYMAGGDIPAAASLLNMAVDALCK-EGHPRAAVELFERWRREEPDSPPDER 184

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ ILL GW + G +++  K + EM  R       V+ Y T +  L   ++ D+A+  L 
Sbjct: 185 AYNILLHGWSRAGRLDKVGKLWAEM--RLAGVRPTVVTYGTLIEGLCVKRRPDQAIALLD 242

Query: 279 VMKGEN-------CFPTL------KFFSNALDILVKL----------------------N 303
            M+ E        C P +        F +A  +L K                        
Sbjct: 243 EMREEGIEANLLTCNPIVYALAQAGRFQDAHKVLEKFPLYGVAPNISTFNSLVMGYCKHG 302

Query: 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
           D   A  +  +M    G  P + TYN  F    KN  V     F+ +MI N + P  L  
Sbjct: 303 DLAGASSVLKVM-TERGISPTTRTYNYFFMTFAKNSDVESGMNFYSKMIGNGYSPDQLTY 361

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
              + ML  A+  E+ +++   +  +G  P  A++  L+  L    +  +     E+M  
Sbjct: 362 VLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCRRHQFEEACAEFEDMFK 421

Query: 424 RRILIYEVTMHKLKK 438
           R I+   +T  KL +
Sbjct: 422 RGIVPQYITYQKLMR 436



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 139/333 (41%), Gaps = 46/333 (13%)

Query: 95  PSSAVDFF-RWAGRGQRLSP---YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           P +AV+ F RW  R +  SP    A+N+++    + GR +++      M+  GV  ++ T
Sbjct: 162 PRAAVELFERWR-REEPDSPPDERAYNILLHGWSRAGRLDKVGKLWAEMRLAGVRPTVVT 220

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + ++ +  C   + D+A+   D M   G+E +++  N ++ A+  Q  +   A + L + 
Sbjct: 221 YGTLIEGLCVKRRPDQAIALLDEMREEGIEANLLTCNPIVYALA-QAGRFQDAHKVLEKF 279

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
               V P+  +F  L+ G+ K G++  A+     M ER   +P     Y  F +T  +  
Sbjct: 280 PLYGVAPNISTFNSLVMGYCKHGDLAGASSVLKVMTER-GISPT-TRTYNYFFMTFAKNS 337

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            V+  + F   M G                                    +G  PD LTY
Sbjct: 338 DVESGMNFYSKMIG------------------------------------NGYSPDQLTY 361

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
            ++ + L +  R+  V +   EM  + ++P        I +L    + E A   +  + +
Sbjct: 362 VLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCRRHQFEEACAEFEDMFK 421

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            GI+P   +  +L+  L+ LG +  +++    M
Sbjct: 422 RGIVPQYITYQKLMRELKRLGLVRLIQKLTNLM 454


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 134/321 (41%), Gaps = 41/321 (12%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
           LSP  + +N+      K G  ++  +    M++ G+  ++  + ++ D+ C  G+ D+A 
Sbjct: 370 LSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAE 429

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAIC------RQENQTSRALE--------FLNRV---- 209
           + F+ M   GV  ++V  NSL+  +C      R E      L+        F N +    
Sbjct: 430 VKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNL 489

Query: 210 ---------KKIVD--------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
                    ++++D        PD  S+  L+ G+   G  +EA K F  MV     +P 
Sbjct: 490 CNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVS-IGLSPT 548

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            V  Y T L       ++D+A    R M  +   P +  ++  L  L +    + A +L+
Sbjct: 549 EV-TYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELY 607

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
            + M+  G   D  TYN+I   L K+  V E  K F  +     Q   +     I  LL 
Sbjct: 608 -LNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLK 666

Query: 373 ADEPEIAIEIWNYILENGILP 393
               E A++++  I  NG++P
Sbjct: 667 GGRKEDAMDLFAAIPANGLVP 687



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 130/322 (40%), Gaps = 39/322 (12%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F     RG       +  ++D L K   F++     + M ++G   +  T+  +   Y  
Sbjct: 222 FLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLS 281

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            GK+ E V   + MS  G++ D     SLL+ +C+          F + ++K + P   +
Sbjct: 282 IGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVST 341

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + IL+ G+  +G + E +     MVE    +P+H + +  F     +   +D+       
Sbjct: 342 YGILIHGYATKGALSEMHSFLDLMVEN-GLSPDHHI-FNIFFSAYAKCGMIDK------- 392

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
                          A+DI  K+                HG  P+ + Y  + + L K  
Sbjct: 393 ---------------AMDIFNKMRQ--------------HGLSPNVVNYGALIDALCKLG 423

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           RV + E  F++MI     P  +   + +  L   D+ E A E+   +L+ GI P     N
Sbjct: 424 RVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFN 483

Query: 400 ELLVGLRNLGRLSDVRRFAEEM 421
            L+  L N+GR+ + RR  + M
Sbjct: 484 TLICNLCNVGRVMEGRRLIDLM 505



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 140/341 (41%), Gaps = 10/341 (2%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + RG +   Y +  +++ L KNGR  +       M   G+   + T+  +   Y   G  
Sbjct: 296 SARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGAL 355

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAI 222
            E     D+M  +G+  D    N   SA  +      +A++  N++++  + P+  ++  
Sbjct: 356 SEMHSFLDLMVENGLSPDHHIFNIFFSAYAKC-GMIDKAMDIFNKMRQHGLSPNVVNYGA 414

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++   K G V++A   F +M+   E    +++ + + +  L    + + A + +  M  
Sbjct: 415 LIDALCKLGRVDDAEVKFNQMIN--EGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLD 472

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +   P   FF+  +  L  +       +L D+M    G  PD+ +Y  +        R  
Sbjct: 473 QGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHV-GVRPDAFSYTPLISGYCLTGRTD 531

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E EK F  M+     PT +   T +     A   + A  ++  +L  G+ P   + N +L
Sbjct: 532 EAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTIL 591

Query: 403 VGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKA 439
            GL    R S+ +     M+N      I  Y + ++ L K+
Sbjct: 592 HGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKS 632



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 114/279 (40%), Gaps = 3/279 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L T++ +   +C  G  +    +F ++   G   D +A+N LL  +C  +         
Sbjct: 89  NLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVL 148

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLIT 263
           L R+ ++   PD  S+ ILL+G   E   EEA +    M  +     P +V++Y   +  
Sbjct: 149 LQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVING 208

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
                QVD+       M      P +  ++  +D L K      A  ++   M+ +G  P
Sbjct: 209 FFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQ-QMIDNGFKP 267

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           ++ TYN +    +   +  EV +   EM     +P      + +  L        A   +
Sbjct: 268 NNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFF 327

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
           + ++  GI P  ++   L+ G    G LS++  F + M+
Sbjct: 328 DSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMV 366



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/347 (19%), Positives = 133/347 (38%), Gaps = 9/347 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSF 170
           ++ +++  L    R E+    + +M +D     P    +++ + + +   G+ D+    F
Sbjct: 163 SYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLF 222

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             M   G+  DVV   +++  +C+ +        F   +     P+  ++  L+ G+   
Sbjct: 223 LEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSI 282

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G  +E  +   EM  R    P+    Y + L  L +  +  EA  F   M  +   P + 
Sbjct: 283 GKWKEVVQMLEEMSAR-GLKPD-CYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVS 340

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +   +         +      D +MV +G  PD   +N+ F    K   + +    F++
Sbjct: 341 TYGILIHGYATKGALSEMHSFLD-LMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNK 399

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M ++   P  +N    I  L      + A   +N ++  G+ P     N L+ GL  + +
Sbjct: 400 MRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDK 459

Query: 411 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLE 455
                    EML++ I    V  + L     N  R M  R + D +E
Sbjct: 460 WERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLME 506



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 48/225 (21%)

Query: 142 DGVLSLP------TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           DG++S+       T+ ++   YC A + D+A   F  M   GV   VV  N++L  +  Q
Sbjct: 538 DGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGL-FQ 596

Query: 196 ENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEH 253
             + S A E +LN +      D  ++ I+L G  K   V+EA K F  +  +  + N   
Sbjct: 597 TKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLN--- 653

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           ++ +   +  L++G + ++A+     +                                 
Sbjct: 654 IITFTIMIGALLKGGRKEDAMDLFAAIPA------------------------------- 682

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
                +G  P+ +TY ++ E LI+   + E +  F  M KN   P
Sbjct: 683 -----NGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAP 722


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 136/328 (41%), Gaps = 7/328 (2%)

Query: 98  AVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-D 155
           A++ FR     + L   Y +  ++D L K  R ++    +  M+ +G    P   ++  D
Sbjct: 206 AIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLID 265

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVD 214
             C  G         D M + G   + V  N+L+  +C +  +  +A+  L R V     
Sbjct: 266 GLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLK-GKLDKAVSLLERMVSSKCI 324

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  ++  L+ G  K+    +A +    M ER     +H+  Y   +  L +  + +EA+
Sbjct: 325 PNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHI--YSVLISGLFKEGKAEEAM 382

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
              R M  + C P +  +S  +D L +      A ++ +  M+  G  P++ TY+ + + 
Sbjct: 383 SLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILN-RMIASGCLPNAYTYSSLMKG 441

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
             K     E  + + EM K          +  I  L      + A+ +W+ +L  GI P 
Sbjct: 442 FFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPD 501

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEML 422
             + + ++ GL  +G +    +   EML
Sbjct: 502 TVAYSSIIKGLCGIGSMDAALKLYHEML 529



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 163/399 (40%), Gaps = 47/399 (11%)

Query: 86  EVLQLSYDSPSSAVDFFRWAGRGQ-RLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDG 143
           EV++   ++P S   F      G  +L     + M++    +G F+ +   + R+  E+ 
Sbjct: 49  EVVENPLEAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENR 108

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQENQTSRA 202
           V+   +F  +F +Y  A   D+AV  F  M      ++ V + NS+L+ I   E    R 
Sbjct: 109 VIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVII-NEGLYHRG 167

Query: 203 LEFLNRVKKI-----VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
           LEF + V        + P+G SF ++++   K   V+ A + F  M ER +  P+    Y
Sbjct: 168 LEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPER-KCLPDG-YTY 225

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
            T +  L + +++DEA+  L  M+ E C P+   ++  +D L K  D T   +L D  M 
Sbjct: 226 CTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVD-NMF 284

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL------ 371
             G  P+ +TYN +   L    ++ +       M+ ++  P  +   T I  L+      
Sbjct: 285 LKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAT 344

Query: 372 DA-----------------------------DEPEIAIEIWNYILENGILPLEASANELL 402
           DA                              + E A+ +W  + E G  P     + L+
Sbjct: 345 DAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLV 404

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
            GL   G+ ++ +     M+    L    T   L K F+
Sbjct: 405 DGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFF 443



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 112/260 (43%), Gaps = 7/260 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  +++ L K  R       +  M+E G  L+   ++ +       GK +EA+  +  M
Sbjct: 329 TYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKM 388

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
           +  G + ++V  + L+  +CR E + + A E LNR +     P+  +++ L++G+ K G 
Sbjct: 389 AEKGCKPNIVVYSVLVDGLCR-EGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGL 447

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            EEA + + EM +       +   Y   +  L    +V EA+     M      P    +
Sbjct: 448 CEEAVQVWKEMDK--TGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAY 505

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFH--GAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
           S+ +  L  +     A++L+  M+      + PD +TYN++ + L   K +       + 
Sbjct: 506 SSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNS 565

Query: 351 MIKNEWQPTPLNCATAITML 370
           M+     P  + C T +  L
Sbjct: 566 MLDRGCDPDVITCNTFLNTL 585



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 119/320 (37%), Gaps = 53/320 (16%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T +S+ +SY  +G +D                   +V  LLS I R EN+          
Sbjct: 79  TLSSMIESYANSGDFD-------------------SVEKLLSRI-RLENRV--------- 109

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
              I++    SF ++   + K    ++A   F  MV+ F      V ++ + L  +I   
Sbjct: 110 ---IIE---RSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCK-RSVKSFNSVLNVIINEG 162

Query: 269 QVDEALKFLRVMKGEN----CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG---- 320
                L+F   +   N      P    F+  +  L KL     A++      VF G    
Sbjct: 163 LYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIE------VFRGMPER 216

Query: 321 -AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
              PD  TY  + + L K +R+ E      EM      P+P+     I  L    +    
Sbjct: 217 KCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRV 276

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
            ++ + +   G +P E + N L+ GL   G+L       E M++ + +  +VT   L   
Sbjct: 277 TKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLING 336

Query: 440 FYNESRSMRDI--FDSLERR 457
              + R+   +    S+E R
Sbjct: 337 LVKQRRATDAVRLLSSMEER 356


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 148/316 (46%), Gaps = 12/316 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N+++  L   G+  Q  + +R+M E G +  P    + ++ D +   G  ++A   F
Sbjct: 185 FSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLF 244

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  D+V  +S++ A+C+      +A  FL + V K V PD  ++  L+ G+  
Sbjct: 245 KEMVQRGIPPDLVTYSSVVHALCKAR-AMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSS 303

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL--RVMKGENCFP 287
            G  +EA + F EM  R    P+ V+A  T + +L +  ++ EA        MKG+N  P
Sbjct: 304 TGQWKEAVRVFKEM-RRQSILPD-VVALNTLMGSLCKYGKIKEARDVFDTMAMKGQN--P 359

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
            +  ++  L+             L+D+M+   G  P   T+N++ +       + +    
Sbjct: 360 DVFSYTIMLNGYATKGCLVDMTDLFDLML-GDGIAPVICTFNVLIKAYANCGMLDKAMII 418

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           F+EM  +  +P  +   T I  L    + + A+E +N +++ G++P + + + L+ G   
Sbjct: 419 FNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCT 478

Query: 408 LGRLSDVRRFAEEMLN 423
            G L   +    E++N
Sbjct: 479 HGSLLKAKELISEIMN 494



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 159/378 (42%), Gaps = 25/378 (6%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPT 149
           Y     A D F   A +GQ    +++ +M++     G    M +   +M  DG+   + T
Sbjct: 339 YGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICT 398

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +  +Y   G  D+A++ F+ M  HGV+  VV   ++++A+CR         +F   +
Sbjct: 399 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMI 458

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + V PD  ++  L++G+   G++ +A +   E++                L  +  G  
Sbjct: 459 DQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNN-----------GMRLDIVFFGSI 507

Query: 270 VDEALKFLRVMKGENCF---------PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           ++   K  RVM  +N F         P    ++  +D    +     A++++D  MV  G
Sbjct: 508 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFD-AMVSAG 566

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             P+ + Y  +     K  R+ E    F EM++   +P+ +     I  L +A     A 
Sbjct: 567 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAK 626

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
             ++ + E+GI   + + + +L GL       +     +E+    + I  +T++ +    
Sbjct: 627 VKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGM 686

Query: 441 YNESR--SMRDIFDSLER 456
           +   R    +D+F S+ R
Sbjct: 687 FQTRRVEEAKDLFASISR 704



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 144/363 (39%), Gaps = 56/363 (15%)

Query: 94  SPSSAVDFF-RWAGRGQR---LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL 147
            P+ AV  F R A R Q    LSP  Y + +++D   +  R E        +   G+   
Sbjct: 88  GPALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVD 147

Query: 148 PTFAS-IFDSYCGAGKYDEAVMSFDVMSMH-----GVEQDVVAVNSLLSAICRQ--ENQT 199
              AS +   +C A + DEA+   D++ +H     G   DV + N LL ++C Q    Q 
Sbjct: 148 AIIASHLLKGFCEAKRTDEAL---DIL-LHRTPELGCVPDVFSYNILLKSLCNQGKSGQA 203

Query: 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
              L  +     +  PD  ++  +++G+ KEG+V +A   F EMV+R    P  ++ Y +
Sbjct: 204 DDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQR--GIPPDLVTYSS 261

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH 319
            +  L + + +D+A  FLR                                     MV  
Sbjct: 262 VVHALCKARAMDKAEAFLR------------------------------------QMVNK 285

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
           G  PD+ TYN +        +  E  + F EM +    P  +   T +  L    + + A
Sbjct: 286 GVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEA 345

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
            ++++ +   G  P   S   +L G    G L D+    + ML   I     T + L KA
Sbjct: 346 RDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKA 405

Query: 440 FYN 442
           + N
Sbjct: 406 YAN 408



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 20/287 (6%)

Query: 185 VNSLLSAICRQENQTS------RALEFLNRVK------KIVDPDGDSFAILLEGWEKEGN 232
           +N  L+A+ R  +  +       A+   NR        +++ P   ++AIL++   +   
Sbjct: 69  LNGFLAALARAPSSAACGSGPALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHR 128

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKF 291
            E A   FG+++ R     + ++A    L      K+ DEAL  L     E  C P +  
Sbjct: 129 PELALAFFGQLL-RTGLRVDAIIASH-LLKGFCEAKRTDEALDILLHRTPELGCVPDVFS 186

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEKFFH 349
           ++  L  L     S  A  L   MM   G    PD + YN + +   K   V++    F 
Sbjct: 187 YNILLKSLCNQGKSGQADDLLR-MMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFK 245

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM++    P  +  ++ +  L  A   + A      ++  G+LP   + N L+ G  + G
Sbjct: 246 EMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTG 305

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSL 454
           +  +  R  +EM  + IL   V ++ L  +   Y + +  RD+FD++
Sbjct: 306 QWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTM 352



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 115/287 (40%), Gaps = 7/287 (2%)

Query: 76  GIIPTPDLVHEVLQ--LSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G++P     H ++Q   ++ S   A +        G RL    +  +++ L K GR    
Sbjct: 461 GVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDA 520

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
            N   +    G+      +  + D YC  GK ++A+  FD M   G+E +VV   +L++ 
Sbjct: 521 QNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNG 580

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
            C+          F   ++K + P    + I+++G  + G    A   F EM E      
Sbjct: 581 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTE--SGIA 638

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            +   Y   L  L + +  DEA+   + ++  N    +   +  +  + +      A  L
Sbjct: 639 MNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDL 698

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
           +   +   G  P ++TY+++   LIK   V E E  F  M     +P
Sbjct: 699 F-ASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEP 744


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 156/376 (41%), Gaps = 36/376 (9%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASI-FDSYCGAGKYDEAVMSFDVMS 174
           ++++V    + G  E+    +  M   G  +  T  +I  ++ C  G+ D+A    + M 
Sbjct: 319 FDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMG 378

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
            +G   D ++  ++L  +CR E +   A E L   V+K   P+  +F   +    ++G +
Sbjct: 379 SYGCSPDTISYTTVLKGLCRAE-RWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLI 437

Query: 234 EEANKTFGEM----------------------------VERFEWNP--EHVLAYETFLIT 263
           E+A     +M                            +E F   P   + + Y T L  
Sbjct: 438 EQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTG 497

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L   +++D A + L  M  ++C P +  F+  +    +      A++L + MM  HG  P
Sbjct: 498 LCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMME-HGCTP 556

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           + +TYN + + + K+    E  +  H ++ N   P  +  ++ I +L   D  E AI+++
Sbjct: 557 NLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMF 616

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
           + + + G+ P     N++L+ L           F   M++   +  E+T   L +   NE
Sbjct: 617 HIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANE 676

Query: 444 S--RSMRDIFDSLERR 457
              +  RD+   L  R
Sbjct: 677 DFLKETRDLLRELCSR 692



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 125/278 (44%), Gaps = 7/278 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  + +L + G  EQ    +  M E G  +++ T+ ++ + +C  G+ D A+  F  M 
Sbjct: 424 FNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP 483

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
               + + +   +LL+ +C  E   + A      ++K   P+  +F +L+  + ++G ++
Sbjct: 484 ---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMD 540

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA +   +M+E       +++ Y T L  + +    +EAL+ L  +      P +  +S+
Sbjct: 541 EAIELVEQMME--HGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSS 598

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            + +L + +    A++++ I+    G  P ++ YN I   L K         FF  M+ N
Sbjct: 599 IIGVLSREDRVEEAIKMFHIVQDL-GMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSN 657

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
              P  L   T I  L + D  +   ++   +   G+L
Sbjct: 658 GCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVL 695



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/351 (20%), Positives = 143/351 (40%), Gaps = 40/351 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG + S   + ++++ + K+  F Q    +  M+  G   ++ T+  I +  C  G+ D+
Sbjct: 205 RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDD 264

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    + +S +G + D V+  ++L  +C  +        F   ++K   P+  +F +L+ 
Sbjct: 265 AREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVR 324

Query: 226 GWEKEGNVEEANKTFGEM----------------------------------VERFEWNP 251
            + + G VE A +   +M                                  +  +  +P
Sbjct: 325 FFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSP 384

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           +  ++Y T L  L R ++ ++A + L+ M  +NC P    F+  + IL +      A  L
Sbjct: 385 D-TISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATML 443

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
            +  M  HG   + +TYN +        RV    + F+ M     +P  +   T +T L 
Sbjct: 444 IE-QMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLC 499

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
           +A+  + A E+   +L+    P   + N L+      G + +     E+M+
Sbjct: 500 NAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMM 550



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 110/269 (40%), Gaps = 6/269 (2%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           +  + C  G+  +A          G   DV A N+L++  CR   Q   A   +  +   
Sbjct: 115 LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRY-GQLDAARRLIASMP-- 171

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V PD  ++  ++ G    G V EA     +M+ R    P  V+ Y   L  + +     +
Sbjct: 172 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR-GCQPS-VVTYTVLLEAVCKSTGFGQ 229

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A++ L  M+ + C P +  ++  ++ + +      A +  + +  + G  PD+++Y  + 
Sbjct: 230 AMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSY-GFQPDTVSYTTVL 288

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
           + L   KR  +VE+ F EM++    P  +     +         E AI++   +  +G  
Sbjct: 289 KGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCA 348

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEM 421
                 N ++  +   GR+ D  +F   M
Sbjct: 349 ANTTLCNIVINTICKQGRVDDAFQFLNNM 377



 Score = 45.4 bits (106), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 69/187 (36%), Gaps = 4/187 (2%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V AY T +    R  Q+D A + +  M      P    ++  +  L        A+ L D
Sbjct: 144 VFAYNTLVAGYCRYGQLDAARRLIASMPVA---PDAYTYTPIIRGLCDRGRVGEALSLLD 200

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
            M+   G  P  +TY ++ E + K+    +  +   EM      P  +     I  +   
Sbjct: 201 DML-HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCRE 259

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 433
              + A E  N +   G  P   S   +L GL    R  DV     EM+ +  +  EVT 
Sbjct: 260 GRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTF 319

Query: 434 HKLKKAF 440
             L + F
Sbjct: 320 DMLVRFF 326



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 11/147 (7%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D + K+   E+    +  +  +GV   + T++SI        + +EA+  F ++ 
Sbjct: 561 YNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQ 620

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNV 233
             G+    V  N +L A+C++ N T  A++F    V     P+  ++  L+EG   E  +
Sbjct: 621 DLGMRPKAVIYNKILLALCKRCN-TDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFL 679

Query: 234 EEANKTFGEMVERF--------EWNPE 252
           +E      E+  R         EW P+
Sbjct: 680 KETRDLLRELCSRGVLNKNLLEEWRPK 706


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 155/362 (42%), Gaps = 35/362 (9%)

Query: 98  AVDFFRWAGRGQ-RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TF 150
           A++F+     G+  +SP   ++NL++  + K G  ++   A+ V +E  +        T+
Sbjct: 170 ALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDR---AIEVFREMAIQKCEPDVFTY 226

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            ++ D  C   + DEAV+  D M + G     V  N L++ +C++ +          RV 
Sbjct: 227 CTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMV--------RVT 278

Query: 211 KIVD--------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           K+VD        P+  ++  ++ G   +G +++A      MV   +  P  V  Y T + 
Sbjct: 279 KLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVAS-KCVPNDV-TYGTLIN 336

Query: 263 TLIR-GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
            L++ G+ VD  +  L  ++          +S  +  L K   S  A+ LW   MV  G 
Sbjct: 337 GLVKQGRSVD-GVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWK-KMVEKGC 394

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            P+ + Y+ + + L +  ++ E ++   EM+     P     ++ I         + AI 
Sbjct: 395 QPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIR 454

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLK 437
           +W  + +N  +P E   + L+ GL   G+L +       ML R     ++ Y   +H L 
Sbjct: 455 VWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLC 514

Query: 438 KA 439
            A
Sbjct: 515 NA 516



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 5/217 (2%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSF 220
           K +EA+  +  M   G + ++V  ++L+  +CR E +   A E L   V K   P+  ++
Sbjct: 378 KSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCR-EGKLDEAKEILCEMVNKGCTPNAFTY 436

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           + L++G+ K GN ++A + + EM +     P  +  Y   +  L    ++ EA+     M
Sbjct: 437 SSLIKGFFKTGNSQKAIRVWKEMAKN-NCVPNEI-CYSVLIHGLCEDGKLREAMMMWTHM 494

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG-AFPDSLTYNMIFECLIKNK 339
            G    P +  +S+ +  L         ++L++ M+     + PD +TYN++   L K  
Sbjct: 495 LGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQN 554

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
            +       + M+     P  + C   +  L +   P
Sbjct: 555 SISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNP 591



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 100/243 (41%), Gaps = 6/243 (2%)

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +F ++   + K    E+A + FG MV+ F+     V ++ + L  +I+      AL+F  
Sbjct: 117 NFILVFRAYGKAHLPEKAIELFGRMVDEFQCR-RTVRSFNSVLNVIIQEGLFHRALEFYE 175

Query: 279 VMKG--ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
              G   N  P +  F+  +  + KL     A++++  M +     PD  TY  + + L 
Sbjct: 176 CGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAI-QKCEPDVFTYCTLMDGLC 234

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           K  R+ E      EM      P+ +     I  L    +     ++ + +   G +P E 
Sbjct: 235 KEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEV 294

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI--FDSL 454
           + N ++ GL   G+L       + M+  + +  +VT   L      + RS+  +    SL
Sbjct: 295 TYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSL 354

Query: 455 ERR 457
           E R
Sbjct: 355 EER 357



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/259 (19%), Positives = 107/259 (41%), Gaps = 21/259 (8%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +   ++ ++D L + G+ ++    +  M   G   +  T++S+   +   G   +
Sbjct: 392 KGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQK 451

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  +  M+ +    + +  + L+  +C         + + + + + + PD  +++ ++ 
Sbjct: 452 AIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIH 511

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G    G+VE   K F EM+ +   +   V+ Y   L  L +   +  A+  L  M    C
Sbjct: 512 GLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGC 571

Query: 286 FP---TLKFFSNAL---------------DILVKLNDSTHAVQLWDIMMVFHGAF--PDS 325
            P   T   F NAL               +++V+L+     V    I+ V    F  P++
Sbjct: 572 NPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNA 631

Query: 326 LTYNMIFECLIKNKRVHEV 344
            T+  I   L K K+V  +
Sbjct: 632 STWERIIPELCKPKKVQAI 650


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 152/353 (43%), Gaps = 12/353 (3%)

Query: 92  YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA 151
           + SPS     F  +     + P   ++++ +  ++    +      +MK+DGVL  P+ A
Sbjct: 93  FSSPSHLYTLFSLSS--TPMKPLFSDMLLSICSESKMVSESAELYMLMKKDGVL--PSVA 148

Query: 152 SI---FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           S+    +S     +Y++ +  F  +   G+  D       + A  +      RA+E +  
Sbjct: 149 SLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKL-GDLKRAIELMTC 207

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K+  V P    + +++ G  KE  +++A K F EM++R    P  +  Y T +    + 
Sbjct: 208 MKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDR-RVAPNRI-TYNTLIDGYCKV 265

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            Q++EA      MK EN  PT+  F++ L+ L +      A ++ + M V+ G  PD  T
Sbjct: 266 GQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVY-GFVPDRFT 324

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y  +F+  +K   V        E ++   Q     C+  +  L      E A E+    L
Sbjct: 325 YTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFL 384

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           ENG+ P+    N ++ G   +G ++      E+M    +    VT + L K F
Sbjct: 385 ENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKF 437



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 149/336 (44%), Gaps = 15/336 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF-ASIFDSYCGAGKYDE 165
           +G ++  Y  +++++ L K G  E+    ++   E+G+  +  F  +I + YC  G  ++
Sbjct: 351 KGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINK 410

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A  + + M   G+  + V  NSL+   C  +N           V+K V P+ +++  L++
Sbjct: 411 AYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLID 470

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ +    +   +   EM E+    P +V++Y   +  L +   + EA   L  M     
Sbjct: 471 GYGRSCLFDRCFQILEEM-EKKGLKP-NVISYGCLINCLCKDANILEAEVILGDMVHRGV 528

Query: 286 FPTLKFFSNALD---ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
            P  + ++  +D   I  KL D   A + +D  MV     P  +TYN++   L K  +V 
Sbjct: 529 VPNAQIYNMLIDGSCIAGKLKD---AFRFFD-EMVAREIVPTLVTYNILINGLCKKGKVM 584

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E E    E+ +       +   + I+    A   + A+E++  + ++GI P   + + L+
Sbjct: 585 EAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLI 644

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMH 434
            G    G L  V +  +EML   +    +IY   +H
Sbjct: 645 AGCGKEG-LVLVEKIYQEMLQMNLVPDRVIYNALIH 679



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 159/393 (40%), Gaps = 52/393 (13%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A++      RG  +SP  + +N+++  L K  R +        M +  V  +  T+ ++ 
Sbjct: 201 AIELMTCMKRGG-VSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLI 259

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKI 212
           D YC  G+ +EA    + M +  VE  ++  NSLL+ +CR +   +  R LE +     +
Sbjct: 260 DGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFV 319

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY--ETFLITLIRGKQV 270
             PD  ++  L +G  K GNV+ A+ T  E   R       +L Y     L  L +   +
Sbjct: 320 --PDRFTYTTLFDGHLKCGNVD-ASITLSEEAVR---KGVQILDYTCSILLNALCKEGNM 373

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
           ++A + L+        P   FF+  ++   ++ D   A    + M    G  P+ +TYN 
Sbjct: 374 EKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAV-GLRPNHVTYNS 432

Query: 331 IFECLIKNKRVHEVEKFFHEMI-----------------------------------KNE 355
           + +   + K + E EK   +M+                                   K  
Sbjct: 433 LVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKG 492

Query: 356 WQPTPLNCATAITMLL-DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
            +P  ++    I  L  DA+  E  + I   ++  G++P     N L+ G    G+L D 
Sbjct: 493 LKPNVISYGCLINCLCKDANILEAEV-ILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDA 551

Query: 415 RRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
            RF +EM+ R I+   VT + L      + + M
Sbjct: 552 FRFFDEMVAREIVPTLVTYNILINGLCKKGKVM 584



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/321 (20%), Positives = 142/321 (44%), Gaps = 5/321 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R +   +N +V    +    E+    ++ M E GVL ++ T+ ++ D Y  +  +D  
Sbjct: 422 GLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRC 481

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
               + M   G++ +V++   L++ +C+  N     +   + V + V P+   + +L++G
Sbjct: 482 FQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDG 541

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
               G +++A + F EMV R E  P  ++ Y   +  L +  +V EA      +  +   
Sbjct: 542 SCIAGKLKDAFRFFDEMVAR-EIVPT-LVTYNILINGLCKKGKVMEAENLASEITRKGLS 599

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
             +  +++ +       +   A++L++ M    G  P   TY+ +     K   V  VEK
Sbjct: 600 FDVITYNSLISGYSSAGNVQKALELYETMKK-SGIKPTLNTYHRLIAGCGKEGLVL-VEK 657

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            + EM++    P  +     I   ++  + + A  + + +   GI P + + N L++G  
Sbjct: 658 IYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHF 717

Query: 407 NLGRLSDVRRFAEEMLNRRIL 427
             GR+  V+    +M  R ++
Sbjct: 718 KEGRMHKVKNLVNDMKIRGLI 738



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 70/151 (46%), Gaps = 2/151 (1%)

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
           + + +L+ ++M   G  P   + N+  E L+  KR  +  + F E++++  +P       
Sbjct: 129 SESAELY-MLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGK 187

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
           AI   +   + + AIE+   +   G+ P     N ++ GL    R+ D  +  +EML+RR
Sbjct: 188 AIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRR 247

Query: 426 ILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
           +    +T + L    Y +   + + F+  ER
Sbjct: 248 VAPNRITYNTLIDG-YCKVGQLEEAFNIRER 277


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 150/346 (43%), Gaps = 38/346 (10%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++NL++  L + G  +Q     R M + + V    T++++    C  G+ DEAV   D M
Sbjct: 177 SFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEM 236

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--------PDGDSFAILLE 225
            + G   + VA N L+SA+C++ +        L+R  K+VD        P+  ++  L+ 
Sbjct: 237 QVEGTFPNPVAFNVLISALCKKGD--------LSRASKLVDNMFLKGCVPNEVTYNSLVH 288

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G   +G +++A      MV   +  P  +    TF      G  VD  +K  R + G   
Sbjct: 289 GLCLKGKLDKAMSLLNRMVAN-KCVPNDI----TF------GTLVDGFVKHGRALDGVRV 337

Query: 286 FPTLK---------FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
             +L+          +S+ +  L K     H +QLW   MV  G  P+++ Y+ + + L 
Sbjct: 338 LVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWK-EMVEKGCKPNTIVYSALIDGLC 396

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           +  +  E +++  EM      P     ++ +    +A +   AI +W  + +N     E 
Sbjct: 397 REGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEV 456

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
             + L+ GL   G+L +     ++ML+R I +  V    +   F N
Sbjct: 457 CYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCN 502



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/284 (19%), Positives = 124/284 (43%), Gaps = 9/284 (3%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSF----DVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           ++ +F ++ +     G +D A+  +    D  S   ++ + ++ N ++ A+CR  N    
Sbjct: 135 TVKSFNTVLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQA 194

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETF 260
              F     +    DG +++ L+ G   EG ++EA     EM VE    NP   +A+   
Sbjct: 195 VEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNP---VAFNVL 251

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +  L +   +  A K +  M  + C P    +++ +  L        A+ L +  MV + 
Sbjct: 252 ISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLN-RMVANK 310

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             P+ +T+  + +  +K+ R  +  +    + +  ++    + ++ I+ L    + E  +
Sbjct: 311 CVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGM 370

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           ++W  ++E G  P     + L+ GL   G+  + + +  EM N+
Sbjct: 371 QLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNK 414



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 94/236 (39%), Gaps = 6/236 (2%)

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           SF I+ + + K    ++A   F  M   F    + V ++ T L  +I+    D AL+F  
Sbjct: 102 SFIIMFKAYGKAHLPQKALDLFHRMGAEFHCK-QTVKSFNTVLNVVIQEGCFDLALEFYN 160

Query: 279 VMKGENCFPTLK----FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
            +   N F  ++     F+  +  L ++ +   AV+++   M       D  TY+ +   
Sbjct: 161 HVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFR-GMSDRNCVADGYTYSTLMHG 219

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L    R+ E      EM      P P+     I+ L    +   A ++ + +   G +P 
Sbjct: 220 LCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPN 279

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 450
           E + N L+ GL   G+L         M+  + +  ++T   L   F    R++  +
Sbjct: 280 EVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGV 335



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/268 (20%), Positives = 114/268 (42%), Gaps = 12/268 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVM---KEDGVLSLP-TFASIFDSYCGAGKYDEAVMSF 170
            +  +VD   K+GR     + VRV+   +E G      +++S+       GK +  +  +
Sbjct: 317 TFGTLVDGFVKHGR---ALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLW 373

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEK 229
             M   G + + +  ++L+  +CR E +   A E+L  +K K   P+  +++ L+ G+ +
Sbjct: 374 KEMVEKGCKPNTIVYSALIDGLCR-EGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFE 432

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G++ +A   + EM +  + N  H + Y   +  L +  ++ EAL   + M        +
Sbjct: 433 AGDIHKAILVWKEMTDN-DCN-HHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDV 490

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-PDSLTYNMIFECLIKNKRVHEVEKFF 348
             +S+ +            ++L++ M+  +    PD +TYN++         V       
Sbjct: 491 VAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDIL 550

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEP 376
           + M+     P  + C   +  L D  +P
Sbjct: 551 NTMLDQGCDPDFITCDIFLKTLRDNMDP 578


>gi|297719649|ref|NP_001172186.1| Os01g0151900 [Oryza sativa Japonica Group]
 gi|9663979|dbj|BAB03620.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|13872936|dbj|BAB44041.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|215768885|dbj|BAH01114.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255672883|dbj|BAH90916.1| Os01g0151900 [Oryza sativa Japonica Group]
          Length = 534

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 146/318 (45%), Gaps = 20/318 (6%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAG------RGQRLSPYAWNLMVDVLGKNGR---FEQM 132
           D+V +VLQ    +   A+ FF+WA        G R    A+  M+D+LG+  +     Q+
Sbjct: 113 DVVLKVLQKQRSNWKVALSFFKWAAGLPQYNHGSR----AYTEMLDILGRMKKVRLMRQL 168

Query: 133 WNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
           ++ + V     V++   FA + + Y GA K  EA+  F     +G E D+V    LL ++
Sbjct: 169 FDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSL 228

Query: 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           CR ++       FL + K    P   S+ I+L GW  +G++ +A + + E++   +  P+
Sbjct: 229 CRYKHVEEAEALFLQK-KDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIAS-KLKPD 286

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            +  Y TF+ +L +  ++  A+K    M  +   P +   +  +D L        A++++
Sbjct: 287 -LFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIF 345

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
              M   G   D  TYN + +   K  R+ +V +   +M   E +    N  T   +L  
Sbjct: 346 G-EMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDM---EVKGVSPNNMTYSYILKT 401

Query: 373 ADEPEIAIEIWNYILENG 390
            ++P+  I +   + ++G
Sbjct: 402 TEKPKDVISLMQRMEKSG 419



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 114/267 (42%), Gaps = 15/267 (5%)

Query: 115 AWNLMVD---VLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           +WN++++   V G     +++WN +   K      L T+ +  +S   +GK   AV  F 
Sbjct: 254 SWNIILNGWCVKGSLADAKRVWNEIIASKLKP--DLFTYGTFINSLTKSGKLSTAVKLFT 311

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKE 230
            M   G+  DV   N ++  +C ++ +   ALE    +  +    D  ++  L++ + K 
Sbjct: 312 SMWEKGINPDVAICNCIIDQLCFKK-RIPEALEIFGEMNDRGCQADVATYNTLIKHFCKI 370

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             +E+  +   +M E    +P + + Y   L T  + K V   +  ++ M+   C     
Sbjct: 371 NRMEKVYELLDDM-EVKGVSPNN-MTYSYILKTTEKPKDV---ISLMQRMEKSGCRLDSD 425

Query: 291 FFSNALDILVKLNDSTHAVQL-WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
            ++  L++ V   D    VQL WD  M  +G+ PD  ++ ++   L  + ++ E   ++ 
Sbjct: 426 TYNLILNLYVSW-DYEKGVQLVWD-EMERNGSGPDQRSFTIMVHGLHSHDKLDEALHYYR 483

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEP 376
            M      P P        + +  DEP
Sbjct: 484 TMESRGMTPEPRTKLLVKAIRMKKDEP 510



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 6/203 (2%)

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLR 278
           FA+LL  +     V+EA   F    +R ++  E  ++ ++  L++L R K V+EA + L 
Sbjct: 186 FAVLLNRYAGAHKVQEAIDMF---YKRKDYGFELDLVGFQILLMSLCRYKHVEEA-EALF 241

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
           + K +   P +K ++  L+          A ++W+  ++     PD  TY      L K+
Sbjct: 242 LQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVWN-EIIASKLKPDLFTYGTFINSLTKS 300

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
            ++    K F  M +    P    C   I  L        A+EI+  + + G     A+ 
Sbjct: 301 GKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATY 360

Query: 399 NELLVGLRNLGRLSDVRRFAEEM 421
           N L+     + R+  V    ++M
Sbjct: 361 NTLIKHFCKINRMEKVYELLDDM 383


>gi|225430190|ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial [Vitis vinifera]
 gi|296081989|emb|CBI20994.3| unnamed protein product [Vitis vinifera]
          Length = 597

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 177/436 (40%), Gaps = 55/436 (12%)

Query: 56  ICEIL---AHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQR 110
           IC +L   A +S   +E AL  TGI P   L+  +      SP      FRWA +  G  
Sbjct: 75  ICALLTDPALSSGAPLEDALNRTGIKPCSGLLQAIFSHFDASPKPLFTLFRWAMKQPGFE 134

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG----VLSLPTFASIFDSYCGAGKYDEA 166
            S   +N M+DVL K+  F+  W  V    E G    ++S  TFA +   Y  AG    A
Sbjct: 135 SSMTLFNSMIDVLAKSRAFDSAWLLVLDRIEGGEEPELVSSNTFAVLIRRYARAGMTLSA 194

Query: 167 VMSFDVM----SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD---PDGDS 219
           + +F+      S+   + +      LL ++C+ E     A E+ ++ + +     P    
Sbjct: 195 IRTFEFAFSLDSIRDRDSEWSLFKILLDSLCK-EGHVRVASEYFDQQRGLDPSWVPSIRV 253

Query: 220 FAILLEGW---------------EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           + +LL GW                K  NV+    T+G +VE +        A E  L+  
Sbjct: 254 YNVLLNGWFRSRKLKRAEQLWRTMKRENVKPTVVTYGTLVEGYCRMRRSEKAIE--LVGE 311

Query: 265 IRGKQVD--------------EALKFLRVMK-GENCF-----PTLKFFSNALDILVKLND 304
           +RGK ++              EA +F   M   E C      PT+  +++ +    K  D
Sbjct: 312 MRGKGIEPNVIVYNPIIDSLAEAGRFKEAMGMMERCLVSETGPTISTYNSLVKGFCKAGD 371

Query: 305 STHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
              A ++   MM+  G  P   TYN  F    +  +  E    + +MI++   P  L   
Sbjct: 372 LVGASKVLK-MMISRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHTPDRLTYH 430

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             I M+ + +  ++A+++   +   G     A++  L+  L  + RL +     E+M+ R
Sbjct: 431 LLIKMMCEEERLDLAVQVSKEMRARGCDLDLATSTMLVHLLCKMHRLEEAFAEFEDMIRR 490

Query: 425 RILIYEVTMHKLKKAF 440
            I+   +T  ++  A 
Sbjct: 491 GIVPQYLTFERMNNAL 506


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 145/327 (44%), Gaps = 14/327 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   + + + +++D L K  + ++    +  M E G++ S+ T+ ++ D YC  G  D+
Sbjct: 328 KGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDD 387

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A    D+M  +    +    N L+  +C++  +  +A+  LN+ +++ + P   ++  L+
Sbjct: 388 AFEILDLMESNSCGPNTRTYNELICGLCKKR-KVHKAMALLNKMLERKLSPSLITYNSLI 446

Query: 225 EGWEKEGNVEEANKTFGEMVERF----EWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
            G  K  ++E A +    M E      +W       Y  F+ TL +  +V+EA      +
Sbjct: 447 HGQCKVNDLESAYRLLSLMNENGLVPDQW------TYSVFIDTLCKEGRVEEAGTLFDSV 500

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
           K +        ++  +D   K+     A  L +  M+     P+S TYN++ E L K K+
Sbjct: 501 KAKGVKANEVIYTALIDGYCKVGKIDVAYSLLE-RMLNDACLPNSYTYNVLIEGLCKEKK 559

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           + E      +M+    +PT +     I  +L     + A++++N+++  G  P   +   
Sbjct: 560 MKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTA 619

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRIL 427
            L    + G L +V     +M    IL
Sbjct: 620 FLHAYFSQGMLEEVDDVIAKMNEEGIL 646



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 131/289 (45%), Gaps = 8/289 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRF-EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
            ++SP  Y +N MV+   K G   E    A ++++        T+ S+   +C     D 
Sbjct: 188 NQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDN 247

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILL 224
           A   F +M   G +++ V+  +L+  +C +  + + AL+ F +  +    P   ++ +L+
Sbjct: 248 AYEVFLIMPQKGCQRNEVSYTNLIHGLC-EAGRINEALKLFADMTEDNCCPTVRTYTVLI 306

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
                 G   EA   F EM E+      +V  Y   +  L +  ++DEA K L  M  + 
Sbjct: 307 YALSGSGRKVEALNLFNEMKEK--GCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG 364

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P++  ++  +D   K      A ++ D+M   +   P++ TYN +   L K ++VH+ 
Sbjct: 365 LIPSVVTYNALIDGYCKEGMIDDAFEILDLMES-NSCGPNTRTYNELICGLCKKRKVHKA 423

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
               ++M++ +  P+ +   + I      ++ E A  + + + ENG++P
Sbjct: 424 MALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVP 472



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 126/351 (35%), Gaps = 67/351 (19%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMSFDV 172
           + +++ +D L K GR E+       +K  GV +    + ++ D YC  GK D A    + 
Sbjct: 475 WTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLER 534

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M       +    N L+  +C+++     +      +   V P   ++ IL+    K+G 
Sbjct: 535 MLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGA 594

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE-------------------- 272
            + A K F  MV    + P+ V  Y  FL        ++E                    
Sbjct: 595 FDHALKVFNHMVS-LGYQPD-VCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTY 652

Query: 273 ---------------ALKFLRVMKGENCFPTLKFFSNALDILVKLN-----------DST 306
                          A  FL+ M    C P+L   S  +  L   N           DS 
Sbjct: 653 TVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSV 712

Query: 307 HAVQLWDIM------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
                ++I       MV HG   D   Y  +     + +R+ E +   H M +    P+ 
Sbjct: 713 SNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSE 772

Query: 361 ------LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
                 L+C   + +  +A      + + + ++ENG+LPL  S   L+ GL
Sbjct: 773 DIYNSLLDCCCKLGVYAEA------VRLVDAMVENGLLPLLESYKLLVCGL 817



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 104/273 (38%), Gaps = 3/273 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++ + YC  G   EA +    +   G+  D     SL+   CR +   +    FL  
Sbjct: 196 TFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIM 255

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            +K    +  S+  L+ G  + G + EA K F +M E     P  V  Y   +  L    
Sbjct: 256 PQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTED-NCCPT-VRTYTVLIYALSGSG 313

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +  EAL     MK + C P +  ++  +D L K N    A ++    M   G  P  +TY
Sbjct: 314 RKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLS-EMSEKGLIPSVVTY 372

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N + +   K   + +  +    M  N   P        I  L    +   A+ + N +LE
Sbjct: 373 NALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE 432

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
             + P   + N L+ G   +  L    R    M
Sbjct: 433 RKLSPSLITYNSLIHGQCKVNDLESAYRLLSLM 465



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/351 (20%), Positives = 138/351 (39%), Gaps = 52/351 (14%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDE 165
           ++LSP    +N ++    K    E  +  + +M E+G++    T++   D+ C  G+ +E
Sbjct: 433 RKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEE 492

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A   FD +   GV+ + V   +L+   C+   +   A   L R +     P+  ++ +L+
Sbjct: 493 AGTLFDSVKAKGVKANEVIYTALIDGYCKV-GKIDVAYSLLERMLNDACLPNSYTYNVLI 551

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           EG  KE  ++EA+    +M+      P  V+ Y   +  +++    D ALK    M    
Sbjct: 552 EGLCKEKKMKEASSLVAKML-TMGVKPT-VVTYTILIGEMLKDGAFDHALKVFNHMVSLG 609

Query: 285 CFPTL--------KFFSNAL-----DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
             P +         +FS  +     D++ K+N+               G  PD +TY ++
Sbjct: 610 YQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNE--------------EGILPDLVTYTVL 655

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD----------------- 374
            +   +    H    F   M+    +P+    +  I  L   +                 
Sbjct: 656 IDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNT 715

Query: 375 -EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            E EIA++++  ++E+G     +    L+ G     RL + +     M  R
Sbjct: 716 LEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKER 766



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 109/307 (35%), Gaps = 53/307 (17%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + +   + +++  + K+G F+        M   G    + T+ +   +Y   G  +E 
Sbjct: 574 GVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEV 633

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLE 225
                 M+  G+  D+V    L+    R    T RA +FL   V     P     +IL++
Sbjct: 634 DDVIAKMNEEGILPDLVTYTVLIDGYARL-GLTHRAFDFLKCMVDTGCKPSLYIVSILIK 692

Query: 226 GWEKEGNVEEANKTFGE-----------MVERFEWNPEH-----VLAYETFLITLIRGKQ 269
               E  ++E     G             ++ FE   EH     V  Y   +    + ++
Sbjct: 693 NLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQER 752

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM------------- 316
           ++EA   +  MK     P+   +++ LD   KL     AV+L D M+             
Sbjct: 753 LEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKL 812

Query: 317 ----------------VFHGAFP-----DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
                           VFHG        D + + ++ + L+K   V E  +    M +  
Sbjct: 813 LVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKG 872

Query: 356 WQPTPLN 362
            QP PL 
Sbjct: 873 CQPNPLT 879


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 144/353 (40%), Gaps = 57/353 (16%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++    C  G+  +A+   D +   G + + V+  +L++ +C+   QT  ALEFL R
Sbjct: 84  TFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGLCKV-GQTRAALEFLRR 142

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +  K+V PD   +  +++G  K+  V +A   + EMV +    P  V+ Y T +  L   
Sbjct: 143 IDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAK-RICPS-VVTYNTLICGLCIM 200

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVK-------------------------- 301
            Q+ +A+  L  M  E+  PT+  FS  +D   K                          
Sbjct: 201 AQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTY 260

Query: 302 --LNDSTHAVQ-------LWDIM-------------MVFHGAFPDSLTYNMIFECLIKNK 339
             L D  H V        +++ M             M F   +PD + YN + + L K+ 
Sbjct: 261 NSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSG 320

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           R     KF  EM      P      + +  L      + AIE+   + + GI P   + N
Sbjct: 321 RTPYALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYN 380

Query: 400 ELLVGLRNLGRLSDVRRFAEEML----NRRILIYEVTMHKL-KKAFYNESRSM 447
            L+ GL   GRL D  +  E++L    N  +  Y   +    KK  ++E+ +M
Sbjct: 381 ILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAM 433



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 110/258 (42%), Gaps = 19/258 (7%)

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           +++ ED   ++ TF+ + D++C  GK  EA   F VM    V+ ++V  NSL+       
Sbjct: 212 KMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGH-HLV 270

Query: 197 NQTSRALEFLNRVKKIVD---------------PDGDSFAILLEGWEKEGNVEEANKTFG 241
           N   +A    N + K+VD               PD   +  L++G  K G    A K  G
Sbjct: 271 NVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIG 330

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EM   +   P  +  Y + L  L +   VD+A++ L  +K +   P++  ++  ++ L K
Sbjct: 331 EM--HYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCK 388

Query: 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                 A ++++ ++V  G   D  TYN + +   K     E      +M  +   P   
Sbjct: 389 SGRLKDAEKVFEDLLV-KGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAK 447

Query: 362 NCATAITMLLDADEPEIA 379
           NC   I  L D  E + A
Sbjct: 448 NCEIIIRSLFDKGENDKA 465



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 136/319 (42%), Gaps = 10/319 (3%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  I  S   A  Y   V     M  +G+  ++V ++ L++   +          F
Sbjct: 11  SIFEFGKILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQLGQNALSFSVF 70

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITL 264
            N +KK    D  +F  L++G   +G + +A     ++V + F+ N    ++Y T +  L
Sbjct: 71  ANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQ---VSYGTLINGL 127

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            +  Q   AL+FLR + G+   P +  ++  +D L K      A  L+   MV     P 
Sbjct: 128 CKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLY-FEMVAKRICPS 186

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TYN +   L    ++ +     H+MI  +  PT    +  I       + + A  ++ 
Sbjct: 187 VVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFA 246

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            +++  + P   + N L+ G      L +V + A+ + N  I + +  M+  ++  + + 
Sbjct: 247 VMMKEDVKPNIVTYNSLMDG----HHLVNVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQI 302

Query: 445 RSMRDIFDSL-ERRCKTSQ 462
                I++SL +  CK+ +
Sbjct: 303 YPDMVIYNSLIDGLCKSGR 321


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 126/310 (40%), Gaps = 4/310 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  + ++G  E        M+  G+L  L T+ S+ + YC AG   EA+  F  + 
Sbjct: 340 YNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLK 399

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+   V+  N LL   CR  +           V++   PD  ++ IL+ G  K  N+ 
Sbjct: 400 RAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLA 459

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
              + F EM+ +    P+   AY T +   +      EA +   VM           ++ 
Sbjct: 460 MVREFFDEMLSK-GLQPD-CFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNI 517

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            LD L K  +   A  LW + MV  G  PD +TY  +     +  R+ E    F  M+ +
Sbjct: 518 FLDGLCKSGNLKDAYVLW-MKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVS 576

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
              P+ +     I           A   +  +LE G+ P E + N L+  L  +GR +  
Sbjct: 577 GLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLA 636

Query: 415 RRFAEEMLNR 424
            +   EML R
Sbjct: 637 YQHFHEMLER 646



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/339 (20%), Positives = 149/339 (43%), Gaps = 4/339 (1%)

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
           ++ S + +N ++      G  E+       M+ +G++ ++ T+ +I      +G  + A 
Sbjct: 298 KKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAAR 357

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
           M F  M   G+  D++  NSL++  C+  N       F +  +  + P   ++ ILL+G+
Sbjct: 358 MKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGY 417

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            + G++EEA +   EMVE+    P+ V  Y   +    + + +    +F   M  +   P
Sbjct: 418 CRLGDLEEARRFKQEMVEQ-GCQPD-VSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQP 475

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
               ++  +   + L  ++ A QL ++M +  G   D++TYN+  + L K+  + +    
Sbjct: 476 DCFAYNTRISAELILGSTSEAFQLTEVM-ISRGISSDTVTYNIFLDGLCKSGNLKDAYVL 534

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           + +M+ +  QP  +     I    +      A +I++ +L +G+ P   +    +     
Sbjct: 535 WMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCR 594

Query: 408 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446
            G L     + ++ML   +   EVT + L  A     R+
Sbjct: 595 RGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRT 633



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 119/295 (40%), Gaps = 14/295 (4%)

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAI---CRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           + +F  M+ HGV   +   N +L A+    R ++  S   E L   +  ++P   ++  L
Sbjct: 181 LAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEML---QLGIEPSIVTYNTL 237

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           L+ + +EG V++A K   EM  R        + Y   +  L R  ++++A + +  M+  
Sbjct: 238 LDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMS 297

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
                  F  N L        S        + M   G  P  +TYN I   + ++  V  
Sbjct: 298 KKASAFTF--NPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEA 355

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
               F EM      P  +   + I     A   + A+ ++  +   G+ P   + N LL 
Sbjct: 356 ARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLD 415

Query: 404 GLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
           G   LG L + RRF +EM+ +     +  Y + M+  +K        +R+ FD +
Sbjct: 416 GYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKV--RNLAMVREFFDEM 468



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 89/249 (35%), Gaps = 46/249 (18%)

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G   EA    +VM   G+  D V  N  L  +C+  N     + ++  V   + PD  ++
Sbjct: 491 GSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITY 550

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+    + G + EA   F  M+      P   + Y  F+    R   +  A       
Sbjct: 551 TCLIHAHCERGRLREARDIFDGML--VSGLPPSAVTYTVFIHAYCRRGNLYSAYG----- 603

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                                          W   M+  G  P+ +TYN++   L +  R
Sbjct: 604 -------------------------------WFQKMLEEGVRPNEVTYNVLIHALCRMGR 632

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI----AIEIWNYILENGILPLEA 396
            +   + FHEM++    P         T+L+D +  E     AI +++ + ++GI P   
Sbjct: 633 TNLAYQHFHEMLERGLSPNKYT----YTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHC 688

Query: 397 SANELLVGL 405
           + N L  G 
Sbjct: 689 THNALFKGF 697



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 116/273 (42%), Gaps = 20/273 (7%)

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGD 218
            ++D+    +  M   G+E  +V  N+LL +  R+   +Q ++ L  +        P   
Sbjct: 210 ARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDV 269

Query: 219 SFAILLEGWEKEGNVEEANKTFGEM-----VERFEWNPEHVLAYETFLIT--LIRGKQVD 271
           ++ +++ G  ++G +E+A +    M        F +NP         LIT    RG  V+
Sbjct: 270 TYNVVINGLARKGELEKAAQLVDRMRMSKKASAFTFNP---------LITGYFARG-SVE 319

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
           +A      M+ E   PT+  ++  +  + + + +  A ++  + M   G  PD +TYN +
Sbjct: 320 KAGALQLEMENEGIVPTVVTYNTIIHGMFR-SGNVEAARMKFVEMRAMGLLPDLITYNSL 378

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
                K   + E    F ++ +    P+ L     +       + E A      ++E G 
Sbjct: 379 INGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGC 438

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
            P  ++   L+ G R +  L+ VR F +EML++
Sbjct: 439 QPDVSTYTILMNGSRKVRNLAMVREFFDEMLSK 471



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 97/240 (40%), Gaps = 4/240 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-DSYCGAGKYDE 165
           +G +   +A+N  +      G   + +    VM   G+ S     +IF D  C +G   +
Sbjct: 471 KGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKD 530

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A + +  M   G++ D +    L+ A C +         F   +   + P   ++ + + 
Sbjct: 531 AYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIH 590

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + + GN+  A   F +M+E  E    + + Y   +  L R  + + A +    M     
Sbjct: 591 AYCRRGNLYSAYGWFQKMLE--EGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGL 648

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    ++  +D   K  +   A++L+  M   HG  PD  T+N +F+   + +  H ++
Sbjct: 649 SPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQ-HGIHPDHCTHNALFKGFDEGQSKHAIQ 707



 Score = 44.7 bits (104), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 14/164 (8%)

Query: 57  CEILAHAS------SDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--- 107
           C I AH        + DI   +  +G+ P+  + + V   +Y    +    + W  +   
Sbjct: 552 CLIHAHCERGRLREARDIFDGMLVSGLPPSA-VTYTVFIHAYCRRGNLYSAYGWFQKMLE 610

Query: 108 -GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
            G R +   +N+++  L + GR    +     M E G+  +  T+  + D  C  G ++E
Sbjct: 611 EGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEE 670

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           A+  +  M  HG+  D    N+L       E Q+  A++++  V
Sbjct: 671 AIRLYSEMHQHGIHPDHCTHNALFKGF--DEGQSKHAIQYMENV 712


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 168/384 (43%), Gaps = 42/384 (10%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           LSP    +N M+  L + G+  + +    VM ++   ++ ++  +        K ++A+ 
Sbjct: 321 LSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVSYNMLIQGLLDNKKVEQAIC 380

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGW 227
            + ++   G++ D      L++ +C+     ++AL  L   + +  D D  +++ ++ G 
Sbjct: 381 YWQLLHERGLKADSTTYGLLINGLCKN-GYLNKALRILEEAENEGADLDTFAYSSMVHGL 439

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            K+G +E+A +   +M +       HV  + + +   +R  +++EA+  LR MK ++C P
Sbjct: 440 CKKGMLEQAVELIHQMKKNRRKLNSHV--FNSLINGYVRAFKLEEAISVLREMKSKDCAP 497

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
           T+  ++  ++ L K    + A  L    M+  G  PD +TY+++ + L + ++V      
Sbjct: 498 TVVSYNTIINGLCKAERFSDAY-LSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNL 556

Query: 348 FHEMIKNEWQP----------------------------TPLNCA-------TAITMLLD 372
           +H+ I    +P                              +NC        T +  L  
Sbjct: 557 WHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYK 616

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
           A +   A++IW+ ILE G+ P   S N    GL +  R+SD   F  + L+R IL    T
Sbjct: 617 AGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPNAPT 676

Query: 433 MHKLKKAFYNESRSMRDIFDSLER 456
            + L +A  ++   M    ++  R
Sbjct: 677 WNVLVRAVVDDKPLMEYALNTESR 700



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 120/246 (48%), Gaps = 4/246 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLPTFASIFDSYCGAGKYDEA 166
           G  L  +A++ MV  L K G  EQ    +  MK++   L+   F S+ + Y  A K +EA
Sbjct: 424 GADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEA 483

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +     M        VV+ N++++ +C+ E  +   L     +++ + PD  ++++L++G
Sbjct: 484 ISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDG 543

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             +   V+ A   + + + +    P+ +  +   +  L   ++VD AL+    M+  NC 
Sbjct: 544 LCRGEKVDMALNLWHQCINK-RLKPD-LQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCV 601

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P L   +  ++ L K  D   A+++WD ++   G  PD ++YN+ F+ L    RV +  +
Sbjct: 602 PDLVTHNTIMEGLYKAGDCVEALKIWDRILE-AGLQPDIISYNITFKGLCSCARVSDAIE 660

Query: 347 FFHEMI 352
           F ++ +
Sbjct: 661 FLYDAL 666



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 140/330 (42%), Gaps = 53/330 (16%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           +F+ AG    L  Y  N+++ +  K  +FE+    +  M E+G+   + ++ ++ ++   
Sbjct: 139 YFQTAGMSPNLQTY--NILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAK 196

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           +G   +AV  FD MS+ GV  DV+  N                                 
Sbjct: 197 SGNLLDAVELFDEMSVRGVNPDVMCYN--------------------------------- 223

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
             IL++G+ ++G+  +AN+ +  ++      P  V  Y   +  L +  ++DE+++    
Sbjct: 224 --ILIDGFLRKGDFVKANEIWKRLLTESSVYPS-VETYNIMINGLCKLGKLDESMEMWNR 280

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           MK     P L  FS+ +  L K  +   A +++   M+  G  PD  TYN +   L +  
Sbjct: 281 MKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQ-EMIESGLSPDVRTYNAMLSGLFRTG 339

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITM------LLDADEPEIAIEIWNYILENGILP 393
           ++++  + ++ M KN       NC   ++       LLD  + E AI  W  + E G+  
Sbjct: 340 KLNKCFELWNVMSKN-------NCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKA 392

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLN 423
              +   L+ GL   G L+   R  EE  N
Sbjct: 393 DSTTYGLLINGLCKNGYLNKALRILEEAEN 422



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 156/350 (44%), Gaps = 29/350 (8%)

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWN----------LMVDVLGK 125
           + +P LV ++L+ +  +P++A+  F  A +  G    P+ ++          L+V V   
Sbjct: 7   VISPTLVLKLLK-AEKNPNAALAIFDSACQHPGYAHPPFVFHHILRRLMDPKLVVHV--- 62

Query: 126 NGRFEQMWNAVRV-MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF-DVMSMHGVEQDVV 183
            GR   +  A R    ED  LS         +Y      D+A+  F +++ + G    + 
Sbjct: 63  -GRIVDLMRAQRCTCSEDVALS------AIKAYAKCSMPDQALNLFQNMVDIFGCNPGIR 115

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
           + NS+L+A   + NQ   A  F    +   + P+  ++ IL++   K+   E+       
Sbjct: 116 SFNSMLNAFI-ESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTW 174

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M E    NP+ +L+Y T +  L +   + +A++    M      P +  ++  +D  ++ 
Sbjct: 175 MFEN-GLNPD-ILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRK 232

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
            D   A ++W  ++     +P   TYN++   L K  ++ E  + ++ M KNE  P    
Sbjct: 233 GDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFT 292

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
            ++ I  L  A     A +++  ++E+G+ P   + N +L GL   G+L+
Sbjct: 293 FSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLN 342


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 144/325 (44%), Gaps = 13/325 (4%)

Query: 107 RGQRLS----PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYCGA 160
           +G RL     PYA+N +++ L  +GR +          +DG+ S  + +F  +    C  
Sbjct: 169 KGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRM 228

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGD 218
           G + +A+   + M+  G   D +  N L+  +CR + Q ++  E L R+++  +  P+  
Sbjct: 229 GNFQKALELVERMTEFGCSPDTITHNILVDGLCRAK-QVNKGHEVLRRLQRDGVCMPNAV 287

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  ++ G+ K G +E+A   + +M+E       + + Y   +    +   ++ A++  R
Sbjct: 288 TYTSVISGYCKAGKMEDAMSVYNDMLE--SGTRPNTVTYNVLINGYGKALDMESAVRMYR 345

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            +   +C P +  FS+ +D   +      A ++W  M + H   P+  T+++I   L K 
Sbjct: 346 QLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHH-IQPNVYTFSIIIHSLCKQ 404

Query: 339 KRVHEVEKFFHEM-IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
            R  E      E+ ++ +  P        I +L    + + A  I   + E G  P + +
Sbjct: 405 NRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYT 464

Query: 398 ANELLVGLRNLGRLSDVRRFAEEML 422
              L++G    GR+ +      +M+
Sbjct: 465 YTILIIGHCMKGRIPEAITLFHKMV 489



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 130/289 (44%), Gaps = 10/289 (3%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVM 173
           N++VD L +  +  +    +R ++ DGV  +P   T+ S+   YC AGK ++A+  ++ M
Sbjct: 254 NILVDGLCRAKQVNKGHEVLRRLQRDGV-CMPNAVTYTSVISGYCKAGKMEDAMSVYNDM 312

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G   + V  N L++   +  +  S    +   + +   PD  +F+ L++G+ + G +
Sbjct: 313 LESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQL 372

Query: 234 EEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKF 291
           ++A + + EM +   + N   V  +   + +L +  +  EAL  LR +    +  P    
Sbjct: 373 DDAKRIWKEMGLHHIQPN---VYTFSIIIHSLCKQNRSAEALDILRELNMRTDIAPQTFI 429

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +DIL K      A  L    M   G  PD  TY ++        R+ E    FH+M
Sbjct: 430 YNPVIDILCKGGKVDEA-NLIVTDMKEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKM 488

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           ++   +P  +   + ++ +L A  P    +I      +G+   + S+ +
Sbjct: 489 VEAGCRPDNITVNSFVSCVLKAGMPNEVDQIMLIASGHGLASQKVSSQQ 537



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/351 (19%), Positives = 136/351 (38%), Gaps = 56/351 (15%)

Query: 119 MVDVLGKNGR-------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           ++  L ++GR       F+QM +    + E G      F+ +  S   AG  D A     
Sbjct: 114 VIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGF-----FSFVAGSCTNAGLLDAASTLLT 168

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKE 230
             S  G   +  A N LL+++            F + ++  +  PD  SF ++++G  + 
Sbjct: 169 KGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRM 228

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN ++A +    M E F  +P+  + +   +  L R KQV++  + LR ++ +       
Sbjct: 229 GNFQKALELVERMTE-FGCSPD-TITHNILVDGLCRAKQVNKGHEVLRRLQRDGV----- 281

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
                                           P+++TY  +     K  ++ +    +++
Sbjct: 282 ------------------------------CMPNAVTYTSVISGYCKAGKMEDAMSVYND 311

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M+++  +P  +     I     A + E A+ ++  ++     P   + + L+ G    G+
Sbjct: 312 MLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQ 371

Query: 411 LSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 457
           L D +R  +EM    +   +  + + +H L K   N S    DI   L  R
Sbjct: 372 LDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQ--NRSAEALDILRELNMR 420



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 96  SSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFAS 152
           + A+D  R       ++P  + +N ++D+L K G+ ++    V  MKE G      T+  
Sbjct: 408 AEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTI 467

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
           +   +C  G+  EA+  F  M   G   D + VNS +S +
Sbjct: 468 LIIGHCMKGRIPEAITLFHKMVEAGCRPDNITVNSFVSCV 507


>gi|255660996|gb|ACU25667.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 376

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 169/382 (44%), Gaps = 32/382 (8%)

Query: 75  TGIIPTPDLVHEVLQLSYDSPSSAV------DFFRWA------------GRGQRLSPYAW 116
           +G I   + V++ + LS  SP S V       +FR A            G     S  ++
Sbjct: 3   SGDIDGAERVYKEIVLSKVSPDSVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVSSF 62

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N+M+  L  NG+ +++ +   +MK+ G V    TF  +   +C  G  ++++   ++   
Sbjct: 63  NIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITFGILVHGFCKNGYINKSLHVLEMAEQ 122

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVE 234
            G   D  A +++++ +C++ N   +A+  LN  +K    P+   +  L+ G       E
Sbjct: 123 KGGVLDAFAYSAMINGLCKEAN-LDKAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFE 181

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A + F EM      +P  ++ Y T +  L + +   EA   ++ +  +   P +  +S 
Sbjct: 182 DAIRVFREM-GTMHCSPT-IITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSM 239

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +  L   +    A+QLW+  +   G  PD   +N++   L     +      + +M  N
Sbjct: 240 LMKGLCLDHKVERALQLWN-QVTSKGFKPDVQMHNILIHGLCSVGEMQLALSLYFDM--N 296

Query: 355 EWQPTPLNCATAITML----LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
            W+  P N  +  T++     D D    A+ IW  IL NG+ P   S N  L GL +  R
Sbjct: 297 RWKCAP-NLVSHNTLMEGFYKDGDIRN-ALVIWARILRNGLEPDIISYNITLKGLCSCNR 354

Query: 411 LSDVRRFAEEMLNRRILIYEVT 432
           +SD   F  + + ++I++ ++T
Sbjct: 355 ISDAILFLHDAVTKKIVLTKIT 376


>gi|125569053|gb|EAZ10568.1| hypothetical protein OsJ_00400 [Oryza sativa Japonica Group]
          Length = 514

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 146/318 (45%), Gaps = 20/318 (6%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAG------RGQRLSPYAWNLMVDVLGKNGR---FEQM 132
           D+V +VLQ    +   A+ FF+WA        G R    A+  M+D+LG+  +     Q+
Sbjct: 93  DVVLKVLQKQRSNWKVALSFFKWAAGLPQYNHGSR----AYTEMLDILGRMKKVRLMRQL 148

Query: 133 WNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
           ++ + V     V++   FA + + Y GA K  EA+  F     +G E D+V    LL ++
Sbjct: 149 FDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSL 208

Query: 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           CR ++       FL + K    P   S+ I+L GW  +G++ +A + + E++   +  P+
Sbjct: 209 CRYKHVEEAEALFLQK-KDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIAS-KLKPD 266

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            +  Y TF+ +L +  ++  A+K    M  +   P +   +  +D L        A++++
Sbjct: 267 -LFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIF 325

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
              M   G   D  TYN + +   K  R+ +V +   +M   E +    N  T   +L  
Sbjct: 326 G-EMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDM---EVKGVSPNNMTYSYILKT 381

Query: 373 ADEPEIAIEIWNYILENG 390
            ++P+  I +   + ++G
Sbjct: 382 TEKPKDVISLMQRMEKSG 399



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 114/267 (42%), Gaps = 15/267 (5%)

Query: 115 AWNLMVD---VLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           +WN++++   V G     +++WN +   K      L T+ +  +S   +GK   AV  F 
Sbjct: 234 SWNIILNGWCVKGSLADAKRVWNEIIASKLKP--DLFTYGTFINSLTKSGKLSTAVKLFT 291

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKE 230
            M   G+  DV   N ++  +C ++ +   ALE    +  +    D  ++  L++ + K 
Sbjct: 292 SMWEKGINPDVAICNCIIDQLCFKK-RIPEALEIFGEMNDRGCQADVATYNTLIKHFCKI 350

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             +E+  +   +M E    +P + + Y   L T  + K V   +  ++ M+   C     
Sbjct: 351 NRMEKVYELLDDM-EVKGVSPNN-MTYSYILKTTEKPKDV---ISLMQRMEKSGCRLDSD 405

Query: 291 FFSNALDILVKLNDSTHAVQL-WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
            ++  L++ V   D    VQL WD  M  +G+ PD  ++ ++   L  + ++ E   ++ 
Sbjct: 406 TYNLILNLYVSW-DYEKGVQLVWD-EMERNGSGPDQRSFTIMVHGLHSHDKLDEALHYYR 463

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEP 376
            M      P P        + +  DEP
Sbjct: 464 TMESRGMTPEPRTKLLVKAIRMKKDEP 490



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 6/203 (2%)

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLR 278
           FA+LL  +     V+EA   F    +R ++  E  ++ ++  L++L R K V+EA + L 
Sbjct: 166 FAVLLNRYAGAHKVQEAIDMF---YKRKDYGFELDLVGFQILLMSLCRYKHVEEA-EALF 221

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
           + K +   P +K ++  L+          A ++W+  ++     PD  TY      L K+
Sbjct: 222 LQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVWN-EIIASKLKPDLFTYGTFINSLTKS 280

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
            ++    K F  M +    P    C   I  L        A+EI+  + + G     A+ 
Sbjct: 281 GKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATY 340

Query: 399 NELLVGLRNLGRLSDVRRFAEEM 421
           N L+     + R+  V    ++M
Sbjct: 341 NTLIKHFCKINRMEKVYELLDDM 363


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 152/343 (44%), Gaps = 9/343 (2%)

Query: 107 RGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           +G  LSP A  +N +++   + G   +    +  MK DG+  + PT+ ++  ++   G  
Sbjct: 235 QGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWI 294

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--PDGDSFA 221
            +A    + M+ +G E D+   N L   +C Q  +   A    + ++++    PD  ++ 
Sbjct: 295 KQATKVVESMTAYGFEPDLRTYNVLAMGLC-QAGKVDEAFRLKDEMERLGTALPDVVTYN 353

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++   K     +A +   EM  R +     ++ +   + +L +  +++EAL  L  + 
Sbjct: 354 TLVDACFKWRCSSDALRLLEEM--RDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIA 411

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            E   P +  ++  +D   K  +   A  L D  MV  G   D+ T N +   L K KR 
Sbjct: 412 EEGLAPDVITYNTLIDAYCKAGNVAKAFTLMD-EMVGKGLKMDTFTLNTVLYNLCKMKRY 470

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            + E+  H   +  + P  ++  T +        PE A+ +W+ ++E  ++P  ++ N L
Sbjct: 471 EDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTL 530

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           + GL  + RL +      E + + ++  E T + +  A+  E 
Sbjct: 531 IKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEG 573



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 151/361 (41%), Gaps = 45/361 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +    N++V  L K G+ E+    +  + E+G+   + T+ ++ D+YC AG   +
Sbjct: 378 KGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAK 437

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    D M   G++ D   +N++L  +C+ +          +  ++   PD  S+  ++ 
Sbjct: 438 AFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMA 497

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + KE N E A + + +M+ER +  P  +  Y T +  L R +++ EA+           
Sbjct: 498 AYFKEYNPEPALRLWDQMIER-KLIPS-ISTYNTLIKGLCRMERLKEAID---------- 545

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
                          KLN+            V  G  PD  TYN+I     K   +    
Sbjct: 546 ---------------KLNE-----------FVEKGLVPDETTYNIIIHAYCKEGDLENAF 579

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           +F ++M++N ++P  + C T +  L    + + A++++   +E G      + N L+  +
Sbjct: 580 RFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSM 639

Query: 406 RNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTS 461
             +G +     F ++M    L      Y V +  L +A    S    ++   L    K S
Sbjct: 640 CKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEA--GRSEEAHNMLHKLADSGKLS 697

Query: 462 Q 462
           Q
Sbjct: 698 Q 698



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 104/234 (44%), Gaps = 19/234 (8%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++    K G  E  +     M E+     + T  ++ +  C  GK D+A+  F+   
Sbjct: 562 YNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWV 621

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G + DV+  N+L+ ++C+       AL F + ++ K + PD  ++ ++L    + G  
Sbjct: 622 EKGKKVDVITYNTLIQSMCKV-GDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRS 680

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFF 292
           EEA+    ++ +  + +       ++F   L++    DEA   ++  +G+     + K  
Sbjct: 681 EEAHNMLHKLADSGKLS-------QSFACPLLKPSSADEA--DVKEHEGKPEAESSEKAQ 731

Query: 293 SNALDILV-KLNDSTHAVQLWDIMMVF-----HGAFPDSLTYNMIFECLIKNKR 340
            NAL+  + +LN      QL +   V       G   D  TY  + E LIK ++
Sbjct: 732 DNALETYMERLNGLCTGGQLKEAKAVLDEMMQKGMPVDCSTYITLMEGLIKRQK 785


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/339 (20%), Positives = 159/339 (46%), Gaps = 14/339 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGK 162
           +G +LS   + +++  L K+GR ++   AV ++ E  V+ L     T++ +    C  G 
Sbjct: 404 QGLKLSIVTYTVLLSSLCKSGRIDE---AVILLHEMEVIGLKPDLLTYSVLIHGLCKRGA 460

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            +EA+  ++ M    +  +    ++++S +  +   +   + F +  K  V  +   + I
Sbjct: 461 VEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNI 520

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +++G+ K GN+ EA +++ +++E+   +P  ++ + + +    +  ++ EA+K L  +K 
Sbjct: 521 MIDGYAKLGNIGEAVRSYKQIIEK-GISPT-IVTFNSLIYGFCKKGKLAEAVKLLDTIKV 578

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKR 340
               PT   ++  ++   +  D  H+  ++D++  M      P  +TY ++ + L K  R
Sbjct: 579 HGLVPTSVTYTTLMNGYCEEGD-MHS--MFDMLHEMEAKAIKPTQITYTVVVKGLCKEGR 635

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           +HE  +    M      P  +   T I     A + + A ++ N +L++ + P   + N 
Sbjct: 636 LHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNV 695

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
           L+ GL   G L D  R    + ++ I + +V    + KA
Sbjct: 696 LINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKA 734



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 158/362 (43%), Gaps = 10/362 (2%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           AV F R  G G+   P   ++N ++    K G  +   +   +M + G+L  + ++  + 
Sbjct: 254 AVTFLRETG-GEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILL 312

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIV 213
              C AG  +EA+   + M  HGVE D+V  N L +   R     S A + + R +   +
Sbjct: 313 HGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGF-RILGLISGAWKVVQRMLLNGL 371

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           +PD  ++ IL+ G  + GN+EE+ K   +M+   +     ++ Y   L +L +  ++DEA
Sbjct: 372 NPDLVTYTILICGHCQMGNIEESFKLKEKMLS--QGLKLSIVTYTVLLSSLCKSGRIDEA 429

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
           +  L  M+     P L  +S  +  L K      A++L++  M     +P+S   + I  
Sbjct: 430 VILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYE-EMCSKRIYPNSFVCSAIIS 488

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L +   + E + +F  + K++     +     I           A+  +  I+E GI P
Sbjct: 489 GLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISP 548

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDS 453
              + N L+ G    G+L++  +  + +    ++   VT   L    Y E   M  +FD 
Sbjct: 549 TIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNG-YCEEGDMHSMFDM 607

Query: 454 LE 455
           L 
Sbjct: 608 LH 609



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/338 (19%), Positives = 142/338 (42%), Gaps = 16/338 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N++ +     G     W  V+ M  +G+   L T+  +   +C  G  +E+    + M
Sbjct: 342 TYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKM 401

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
              G++  +V    LLS++C+   +   A+  L+ ++ I + PD  ++++L+ G  K G 
Sbjct: 402 LSQGLKLSIVTYTVLLSSLCK-SGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGA 460

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           VEEA + + EM  +  +    V +    +  L     + EA  +   +   +    +  +
Sbjct: 461 VEEAIELYEEMCSKRIYPNSFVCS--AIISGLFEKGAISEAQMYFDSVTKSDVAEEIILY 518

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +D   KL +   AV+ +   ++  G  P  +T+N +     K  ++ E  K    + 
Sbjct: 519 NIMIDGYAKLGNIGEAVRSYK-QIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIK 577

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
            +   PT +   T +    +  +     ++ + +    I P + +   ++ GL   GRL 
Sbjct: 578 VHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLH 637

Query: 413 DVRRFAEEMLNRRILIYEVTM----------HKLKKAF 440
           +  +  + M  R +   ++T           H L+KAF
Sbjct: 638 ESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAF 675



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 164/420 (39%), Gaps = 85/420 (20%)

Query: 50  SSSARIICEILAHASSD-DIESA----LACTGIIPTPDLVHEVL-----------QLSYD 93
           S SA  +CE+L ++  D D+ +     LAC       ++VH+ L           Q+S  
Sbjct: 147 SGSAPSLCELLCNSFRDWDLNNVVWDMLACA--YSRAEMVHDALFVLAKMKVLNLQVSIA 204

Query: 94  SPSSAVDFFR-----W------AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           + +S +   R     W         G   + Y   +++D L +  R +   +AV  ++E 
Sbjct: 205 TYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQ---DAVTFLRET 261

Query: 143 GVL----SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           G      S+ +F ++   +C  G  D A   F +M  +G+  DV + N LL  +C     
Sbjct: 262 GGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLC-VAGS 320

Query: 199 TSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
              ALEF N ++   V+PD  ++ IL  G+   G +  A K    M+     NP+ ++ Y
Sbjct: 321 MEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLN-GLNPD-LVTY 378

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
              +    +   ++E+ K              K  S  L + +                 
Sbjct: 379 TILICGHCQMGNIEESFKLKE-----------KMLSQGLKLSI----------------- 410

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
                   +TY ++   L K+ R+ E     HEM     +P  L  +  I  L      E
Sbjct: 411 --------VTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVE 462

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF---------AEEMLNRRILI 428
            AIE++  +    I P     + ++ GL   G +S+ + +         AEE++   I+I
Sbjct: 463 EAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMI 522



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/135 (17%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
           SP  +N++++ L   G  +     +  +++  + L+   + +I  ++C  G    A++ F
Sbjct: 689 SPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFF 748

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             M   G E  +   +++++ +C++   T     F   +   + PD D   ++L  + + 
Sbjct: 749 HQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRS 808

Query: 231 GNVEEANKTFGEMVE 245
           G+     + F  M++
Sbjct: 809 GDPNSVFEIFAMMIK 823


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 131/310 (42%), Gaps = 40/310 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A++ +V  L K G   Q       MK E  V SL T+  + +S C AG++ +A+  F  M
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
                                             + +K V+PD  ++  L+ G    GN 
Sbjct: 72  ----------------------------------KREKRVEPDRWTYNTLISGLCSSGNT 97

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E A K   EM  R +    +V  Y + + +L++  + +E+ K L  M    C P +  F+
Sbjct: 98  EGARKLLSEM--RDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFN 155

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +    + N+   A +++   MV  G  PD+++Y+++   L K  ++ E  K   EM  
Sbjct: 156 GVMQGFARSNNMEKAREVYQ-HMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAM 214

Query: 354 NE--WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
               + P  +  +T I  L    E E A+E++  +LE G  P + +   L+ GL    ++
Sbjct: 215 RAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKV 274

Query: 412 SDVRRFAEEM 421
              R   E+M
Sbjct: 275 IQARELFEKM 284



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 121/270 (44%), Gaps = 8/270 (2%)

Query: 161 GKYDEAVMSFDVMSMH--GVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDG 217
           GK DE++     M+M   G   +V+  ++L+  +CR   +  +ALE F + ++    P+ 
Sbjct: 200 GKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRT-GELEKALEVFGSMLEAGCKPNK 258

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++  L+ G  +   V +A + F +M +     P   +AY + +    +   +DEA K  
Sbjct: 259 YTYTTLIAGLCRAEKVIQARELFEKMTQ--ACIPPDAVAYNSLIAGYCKRGSMDEAEKLY 316

Query: 278 RVMKGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
           R M G     PT+  F+  +D   KL     A +L   M    G   D+ TY ++   L 
Sbjct: 317 REMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGT-KGLAADTCTYRILIAGLS 375

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           +  ++ E  + + +M + ++   P++C + +  L      + A  ++    ++G +P   
Sbjct: 376 RATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPE 435

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           +   L   L  LGR+ D ++  E    R I
Sbjct: 436 TFRILSESLIKLGRVEDAQKLMEPAKARDI 465



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/246 (20%), Positives = 93/246 (37%), Gaps = 44/246 (17%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           AY+  + +L +   + +AL+    MK E+C P+L  ++  ++      +   A+ L+  M
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 316 MVFHGAFPDSLTYNM-----------------------------------IFECLIKNKR 340
                  PD  TYN                                    I + L+K  +
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
             E  K   EM+     P        +     ++  E A E++ +++E+G  P   S + 
Sbjct: 132 PEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 191

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNR------RILIYEVTMHKLKKAFYNESRSMRDIFDS- 453
           L+ GL  +G+L +  +   EM  R       ++ +   +H L +    E     ++F S 
Sbjct: 192 LIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRT--GELEKALEVFGSM 249

Query: 454 LERRCK 459
           LE  CK
Sbjct: 250 LEAGCK 255


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 155/362 (42%), Gaps = 35/362 (9%)

Query: 98  AVDFFRWAGRGQ-RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TF 150
           A++F+     G+  +SP   ++NL++  + K G  ++   A+ V +E  +        T+
Sbjct: 154 ALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDR---AIEVFREMAIQKCEPDVFTY 210

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            ++ D  C   + DEAV+  D M + G     V  N L++ +C++ +          RV 
Sbjct: 211 CTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMV--------RVT 262

Query: 211 KIVD--------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           K+VD        P+  ++  ++ G   +G +++A      MV   +  P  V  Y T + 
Sbjct: 263 KLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVAS-KCVPNDV-TYGTLIN 320

Query: 263 TLIR-GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
            L++ G+ VD  +  L  ++          +S  +  L K   S  A+ LW   MV  G 
Sbjct: 321 GLVKQGRSVD-GVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWK-KMVEKGC 378

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            P+ + Y+ + + L +  ++ E ++   EM+     P     ++ I         + AI 
Sbjct: 379 QPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIR 438

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLK 437
           +W  + +N  +P E   + L+ GL   G+L +       ML R     ++ Y   +H L 
Sbjct: 439 VWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLC 498

Query: 438 KA 439
            A
Sbjct: 499 NA 500



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 5/217 (2%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSF 220
           K +EA+  +  M   G + ++V  ++L+  +CR E +   A E L   V K   P+  ++
Sbjct: 362 KSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCR-EGKLDEAKEILCEMVNKGCTPNAFTY 420

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           + L++G+ K GN ++A + + EM +     P  +  Y   +  L    ++ EA+     M
Sbjct: 421 SSLIKGFFKTGNSQKAIRVWKEMAKN-NCVPNEI-CYSVLIHGLCEDGKLREAMMMWTHM 478

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG-AFPDSLTYNMIFECLIKNK 339
            G    P +  +S+ +  L         ++L++ M+     + PD +TYN++   L K  
Sbjct: 479 LGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQN 538

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
            +       + M+     P  + C   +  L +   P
Sbjct: 539 SISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNP 575



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 100/243 (41%), Gaps = 6/243 (2%)

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +F ++   + K    E+A + FG MV+ F+     V ++ + L  +I+      AL+F  
Sbjct: 101 NFILVFRAYGKAHLPEKAIELFGRMVDEFQCR-RTVRSFNSVLNVIIQEGLFHRALEFYE 159

Query: 279 VMKG--ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
              G   N  P +  F+  +  + KL     A++++  M +     PD  TY  + + L 
Sbjct: 160 CGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAI-QKCEPDVFTYCTLMDGLC 218

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           K  R+ E      EM      P+ +     I  L    +     ++ + +   G +P E 
Sbjct: 219 KEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEV 278

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI--FDSL 454
           + N ++ GL   G+L       + M+  + +  +VT   L      + RS+  +    SL
Sbjct: 279 TYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSL 338

Query: 455 ERR 457
           E R
Sbjct: 339 EER 341



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/259 (19%), Positives = 107/259 (41%), Gaps = 21/259 (8%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +   ++ ++D L + G+ ++    +  M   G   +  T++S+   +   G   +
Sbjct: 376 KGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQK 435

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  +  M+ +    + +  + L+  +C         + + + + + + PD  +++ ++ 
Sbjct: 436 AIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIH 495

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G    G+VE   K F EM+ +   +   V+ Y   L  L +   +  A+  L  M    C
Sbjct: 496 GLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGC 555

Query: 286 FP---TLKFFSNAL---------------DILVKLNDSTHAVQLWDIMMVFHGAF--PDS 325
            P   T   F NAL               +++V+L+     V    I+ V    F  P++
Sbjct: 556 NPDLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNA 615

Query: 326 LTYNMIFECLIKNKRVHEV 344
            T+  I   L K K+V  +
Sbjct: 616 STWERIIPELCKPKKVQAI 634


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 152/350 (43%), Gaps = 18/350 (5%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYC 158
           F++   R  + + +A+N M+ +L   G +E++      M  +G       T++++  ++C
Sbjct: 178 FYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFC 237

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDG 217
             G+ D A+   + M  +G+ Q    + ++L A+  + +    AL     ++ +   PD 
Sbjct: 238 KLGRQDSAIWLLNEMKDNGM-QPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDV 296

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++  L+ G  K G ++EA   F EM  R    P+ VL     +  L +  ++D+A+K  
Sbjct: 297 FTYTELIRGLGKAGRLDEAYNFFHEM-RREGCRPDTVLM-NNMINFLGKAGRLDDAIKLF 354

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M+   C P++  ++  +  L +       +  W   M   G  P   TY+++ +   K
Sbjct: 355 EEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCK 414

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             R  +      EM +  + P P    + I  L  A   ++A E++  + EN      +S
Sbjct: 415 TNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENC---GSSS 471

Query: 398 ANELLVGLRNL---GRLSDVRRFAEEMLNR-----RILIYEVTMHKLKKA 439
           A    V +++L   GRL D     +EM NR      +  Y   M  L +A
Sbjct: 472 ARVYAVMIKHLGKAGRLDDAVDLFDEM-NRLGCTPNVYAYNALMSGLARA 520



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 119/293 (40%), Gaps = 43/293 (14%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGR-------FEQM-----------WNAV-- 136
           A +FF    R G R      N M++ LGK GR       FE+M           +N +  
Sbjct: 315 AYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIK 374

Query: 137 -------RV---------MKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
                  RV         MK  G+   P T++ + D +C   + ++A+M  + M   G  
Sbjct: 375 ALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFP 434

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANK 238
               A  SL+ A+ + + +   A E    +K+         +A++++   K G +++A  
Sbjct: 435 PCPAAYCSLIDALGKAK-RYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVD 493

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
            F EM  R    P +V AY   +  L R   +DEAL  +R M+   C P +  ++  L+ 
Sbjct: 494 LFDEM-NRLGCTP-NVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNA 551

Query: 299 LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           L K      A+ +    M      PD+++YN +   L       E  K   EM
Sbjct: 552 LAKTGGPDRAMGML-CNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEM 603



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 139/378 (36%), Gaps = 77/378 (20%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLGKNGRFEQMWNAVRVMK 140
           LV EV++      S  + FFRWA R +        +  ++  L    ++ +MW  ++ M 
Sbjct: 88  LVREVMKTDV-GVSVKMQFFRWAARKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMV 146

Query: 141 EDGVLSL-PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT 199
            + V  + P   S                  D++ M G                      
Sbjct: 147 RNPVCVVTPMELS------------------DIIRMLG-----------------NAKMI 171

Query: 200 SRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
           S+A+    ++K +   P   ++  ++     EG  E+ ++ + EM    +  P+ V  Y 
Sbjct: 172 SKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTV-TYS 230

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
             +    +  + D A+  L  MK     PT K ++  + +L KL++   A+ L++  M  
Sbjct: 231 ALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFE-EMRH 289

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
               PD  TY  +   L K  R+ E   FFHEM +   +P         T+L+       
Sbjct: 290 QYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPD--------TVLM------- 334

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
                               N ++  L   GRL D  +  EEM   R +   VT + + K
Sbjct: 335 --------------------NNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIK 374

Query: 439 AFYNESRSMRDIFDSLER 456
           A +     + +I    ER
Sbjct: 375 ALFESKSRVSEISSWFER 392


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 102/433 (23%), Positives = 176/433 (40%), Gaps = 28/433 (6%)

Query: 38  PRFPTHL------DAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLS 91
           PR  T L      D   + S+ R++  +L         +A+A +    T DL+   ++  
Sbjct: 91  PRVSTLLLQSLVADRASLPSARRLVSRLLRFNPLSVAAAAIADSHCTATADLL---VRAC 147

Query: 92  YDSP-----SSAVD-FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL 145
            +SP     S A D F   + RG   S    +++V+ LG  G+ +        M+ DG  
Sbjct: 148 LNSPAPGSLSRAADAFLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEMR-DGKT 206

Query: 146 SLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202
             P   T+ ++  + C AG+ D A      +   G++  VV  N L+ A+C+   +   A
Sbjct: 207 VAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKS-GRVEEA 265

Query: 203 LEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
                R V+  V P   +F IL+ G  +     E      EM + F   P  V+ Y   +
Sbjct: 266 FRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEM-QGFGITPNEVI-YNEMI 323

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
               R     EALK    M  +    T+  ++     L K  +  HA ++ D M++    
Sbjct: 324 GWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMM 383

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
              SL  +++   L    R+  V +   EM+    +P        I  L  + + E A E
Sbjct: 384 VHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAE 443

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLK 437
           IW  +L  G+    A++N L+ GL     + +  +  + M+N  +    + Y + +    
Sbjct: 444 IWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCC 503

Query: 438 KAF-YNESRSMRD 449
           KA   +E+  +RD
Sbjct: 504 KASKMDEAIQLRD 516



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 129/302 (42%), Gaps = 11/302 (3%)

Query: 158 CGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
           C +GK++EA  + F V+   G+  +V   N+L+  +C+  N           V   V+ D
Sbjct: 433 CKSGKHEEAAEIWFQVLG-KGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELD 491

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++ I+++G  K   ++EA +   +M++R  + P+ +  +  FL T     +V+E L  
Sbjct: 492 RITYNIMIQGCCKASKMDEAIQLRDDMIKR-GFKPD-LFTFNIFLHTYCNLGKVEEILHL 549

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
           L  MK E   P +  +   +D   K  D  H    +   ++ +G  P+++ YN +     
Sbjct: 550 LDQMKSEGLKPDIVTYGTIIDGYCKAKD-MHKANEYLTELMKNGLRPNAVIYNALIGGYG 608

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           +N  + +       M  N  QPTP+   + +  +  A   E    ++   +   I     
Sbjct: 609 RNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVI 668

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFD 452
               ++ G   +G++ +   + +EM +R I    + Y   M    K+   E  S   +FD
Sbjct: 669 GYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEAS--KLFD 726

Query: 453 SL 454
            +
Sbjct: 727 EM 728



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 102/229 (44%), Gaps = 8/229 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG +   + +N+ +      G+ E++ + +  MK +G+   + T+ +I D YC A    +
Sbjct: 521 RGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHK 580

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           A      +  +G+  + V  N+L+    R  N  S A+  L+ +K   + P   ++  L+
Sbjct: 581 ANEYLTELMKNGLRPNAVIYNALIGGYGRNGN-ISDAIGILDTMKYNGIQPTPVTYNSLM 639

Query: 225 EGWEKEGNVEEANKTFGE-MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
                 G VEE    F + +V+  E     V+ Y   +    +  ++DEA+ + + M   
Sbjct: 640 YWMCHAGLVEEVKAVFAQCIVKDIELG---VIGYTIIIQGFCKIGKIDEAVMYFKEMHSR 696

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
              P    ++  +    K  +   A +L+D  MV  G  PDS++YN + 
Sbjct: 697 GIPPNKMTYTTLMFAYSKSGNKEEASKLFD-EMVSLGIVPDSVSYNTLI 744



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 1/137 (0%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNA-VRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           G + +P  +N ++  +   G  E++     + + +D  L +  +  I   +C  GK DEA
Sbjct: 627 GIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEA 686

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           VM F  M   G+  + +   +L+ A  +  N+   +  F   V   + PD  S+  L+ G
Sbjct: 687 VMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISG 746

Query: 227 WEKEGNVEEANKTFGEM 243
           + +  ++++  ++  EM
Sbjct: 747 FCEVDSLDKMVESPAEM 763


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 144/324 (44%), Gaps = 8/324 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG +   Y +  M+  L K+GR  +  +   +M E G   S  T+  + +  C  G   +
Sbjct: 144 RGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGD 203

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV---KKIVDPDGDSFAI 222
           A   F+ M   G   +VV+ N+L+  +C    +   A++  + +      V+PD  +F  
Sbjct: 204 AFKIFETMLEKGKRLEVVSYNTLIMGLCNN-GKLDEAMKLFSSLLEDGNYVEPDVITFNT 262

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +++G  KEG +++A + +  M+ER  +   ++      +   I+   +D+A++  + +  
Sbjct: 263 VIQGLCKEGRLDKAVEIYDTMIERGSFG--NLFTCHILIGEYIKSGIIDKAMELWKRVHK 320

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
               P+   +S  +D   K++    A  L+  M +  G  P    YN +   L K   + 
Sbjct: 321 LGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKI-SGLSPTLFDYNTLMASLCKESSLE 379

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +  + F EM ++  +P  ++    I   L A +   A E+ N + + G+ P   + +  +
Sbjct: 380 QARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFI 439

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRI 426
             L  LG++ + +   + M+   I
Sbjct: 440 NRLSKLGQMEEAKGAFDSMIASGI 463



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 130/287 (45%), Gaps = 8/287 (2%)

Query: 139 MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M E G+  ++  ++ + + +C  G + EA      M+  G++ DV     ++  +C+ + 
Sbjct: 106 MLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCK-DG 164

Query: 198 QTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +  +AL+  + + +K  +P   ++ +L+ G  KEG + +A K F  M+E+       V++
Sbjct: 165 RARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEK--GKRLEVVS 222

Query: 257 YETFLITLIRGKQVDEALKFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           Y T ++ L    ++DEA+K    +   G    P +  F+  +  L K      AV+++D 
Sbjct: 223 YNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDT 282

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
            M+  G+F +  T +++    IK+  + +  + +  + K    P+    +  I       
Sbjct: 283 -MIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMH 341

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
               A  +++ +  +G+ P     N L+  L     L   RR  +EM
Sbjct: 342 MLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEM 388



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 131/284 (46%), Gaps = 16/284 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           ++N +++ L K  R E+   AV ++ E +G    P   T+  + D  C  G+ +EA+   
Sbjct: 12  SYNTIINGLCKEKRLEK---AVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLL 68

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             M   G+E DVV  ++L+S  C +         F   ++K + P+   ++ L+ G+ K+
Sbjct: 69  GEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKK 128

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM--KGENCFPT 288
           G   EA      M ER    P+ V  Y   +  L +  +  +AL    +M  KGE   P+
Sbjct: 129 GLWREATAVLHTMTER-GIQPD-VYTYTCMIGGLCKDGRARKALDLFDLMTEKGEE--PS 184

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
              ++  ++ L K      A ++++ M+   G   + ++YN +   L  N ++ E  K F
Sbjct: 185 TVTYNVLINGLCKEGCIGDAFKIFETMLE-KGKRLEVVSYNTLIMGLCNNGKLDEAMKLF 243

Query: 349 HEMIK--NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
             +++  N  +P  +   T I  L      + A+EI++ ++E G
Sbjct: 244 SSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERG 287



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 106/243 (43%), Gaps = 5/243 (2%)

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKT 239
           D+V+ N++++ +C+ E +  +A++ L  ++    +P+  ++ IL++G  KEG VEEA + 
Sbjct: 9   DIVSYNTIINGLCK-EKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
            GEM  + +     V+ Y T +        +D        M  +   P +  +S  ++  
Sbjct: 68  LGEM--KRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGF 125

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            K      A  +    M   G  PD  TY  +   L K+ R  +    F  M +   +P+
Sbjct: 126 CKKGLWREATAVLHT-MTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPS 184

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
            +     I  L        A +I+  +LE G      S N L++GL N G+L +  +   
Sbjct: 185 TVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFS 244

Query: 420 EML 422
            +L
Sbjct: 245 SLL 247



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 89/231 (38%), Gaps = 3/231 (1%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  S+  ++ G  KE  +E+A     EM E     P +   Y   +  L +  +V+EA+
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEM-EGSSCEP-NSFTYCILMDGLCKEGRVEEAM 65

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           + L  MK +     +  +S  +              L+D M+   G  P+ + Y+ +   
Sbjct: 66  RLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLE-KGISPNVVVYSCLING 124

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
             K     E     H M +   QP        I  L        A+++++ + E G  P 
Sbjct: 125 FCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPS 184

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             + N L+ GL   G + D  +  E ML +   +  V+ + L     N  +
Sbjct: 185 TVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGK 235


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 142/312 (45%), Gaps = 13/312 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT----FASIFDSYCGAGKY 163
           G + +P  +  ++  L + G  ++   A+RVM E   L LPT      +I    C A + 
Sbjct: 153 GCKPNPITYGTLIQHLSRAGEIDE---ALRVMIEQRSLELPTDVITCTTIVGGLCKASRL 209

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN--RVKKIVDPDGDSFA 221
           D+A+   + M   GV  + V  ++L+    RQ  +  R + F    + +K    +  ++ 
Sbjct: 210 DDALKFMEEMRQMGVRPNEVTYSNLVHGF-RQHGELDRVIRFFEEEKARKGGSLEAAAYP 268

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
             L+   K G ++ A K+  E+  R       V+ Y   + T  R  Q D +L+ L  M+
Sbjct: 269 GYLDALCKAGYLDRARKSVEEL--RQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMR 326

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
                P +  +S  +++L K      A +L ++M    G+ P+ +TYN + + L K+ ++
Sbjct: 327 RNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEA-AGSPPNVVTYNSVMDGLCKSGKM 385

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            EV + +  M+K+   P  +  +  +  L  A   + A++++  I  +   P  A+ + +
Sbjct: 386 DEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMV 445

Query: 402 LVGLRNLGRLSD 413
           +  L   G+L +
Sbjct: 446 ITSLCRAGKLEE 457



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 148/379 (39%), Gaps = 43/379 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160
           F   A RG       + L+VD L   G   Q    VR +      +L  +  I    C A
Sbjct: 42  FTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVRELSGVYTPTLFIYNGIITGLCRA 101

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDS 219
            +  +A    + M    +  +V     LL+ +CR  N+T  A E    +K+    P+  +
Sbjct: 102 SRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRS-NKTKLAREVFQEMKRNGCKPNPIT 160

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  L++   + G ++EA +   E  +R    P  V+   T +  L +  ++D+ALKF+  
Sbjct: 161 YGTLIQHLSRAGEIDEALRVMIE--QRSLELPTDVITCTTIVGGLCKASRLDDALKFMEE 218

Query: 280 MKGENCFPTLKFFSN---------ALDILVKLNDSTHAVQLWDIMMVFH----------- 319
           M+     P    +SN          LD +++  +   A +   +    +           
Sbjct: 219 MRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAG 278

Query: 320 ---------------GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
                          G  PD +TY+M+     +  +     +   +M +N  +P  +  +
Sbjct: 279 YLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYS 338

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           T I +L    + + A  +   +   G  P   + N ++ GL   G++ +V R  E ML  
Sbjct: 339 TLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKS 398

Query: 425 R----ILIYEVTMHKLKKA 439
           R    ++ Y + M+ L KA
Sbjct: 399 RCSPDVVTYSIIMNGLSKA 417



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 112/253 (44%), Gaps = 6/253 (2%)

Query: 140 KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT 199
           ++ G L    +    D+ C AG  D A  S + +   GV  DVV  + L++   R   Q 
Sbjct: 257 RKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARA-GQF 315

Query: 200 SRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
             +LE L  +++  V PD  +++ L+    KE   ++A +   E++E    +P +V+ Y 
Sbjct: 316 DASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLL-ELME-AAGSPPNVVTYN 373

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
           + +  L +  ++DE  +   +M    C P +  +S  ++ L K      AV+L++++   
Sbjct: 374 SVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSS 433

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM-IKNEWQPTPLNCATAITMLLDADEPE 377
               PD+  Y+M+   L +  ++ E    +H M +           A  +  L DA+  +
Sbjct: 434 REG-PDAAAYSMVITSLCRAGKLEEACGMYHGMEVTVAGDNICRALAGLVAALCDAERTD 492

Query: 378 IAIEIWNYILENG 390
            A  I     E G
Sbjct: 493 SARRIVEVASERG 505



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 92/188 (48%), Gaps = 11/188 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++++++   + G+F+     +  M+ +GV   + T++++ +  C   K+ +A    ++M 
Sbjct: 302 YSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELME 361

Query: 175 MHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
             G   +VV  NS++  +C+  + ++  R  E +  +K    PD  +++I++ G  K G 
Sbjct: 362 AAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMM--LKSRCSPDVVTYSIIMNGLSKAGM 419

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK----GENCFPT 288
           ++ A K F E+++     P+   AY   + +L R  +++EA      M+    G+N    
Sbjct: 420 LDSAVKLF-ELIKSSREGPDAA-AYSMVITSLCRAGKLEEACGMYHGMEVTVAGDNICRA 477

Query: 289 LKFFSNAL 296
           L     AL
Sbjct: 478 LAGLVAAL 485



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 100/244 (40%), Gaps = 12/244 (4%)

Query: 202 ALEFLNR--VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
           A + L R  V+  V  D  +F +L     +     E  + F  +  R     E    Y+ 
Sbjct: 2   AAKLLERSVVEAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETT--YKL 59

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH 319
            +  L      ++AL+ +R + G    PTL  ++  +  L + +    A ++ +  MV  
Sbjct: 60  VVDGLCGAGMANQALELVRELSGVYT-PTLFIYNGIITGLCRASRVMDAYKVLE-KMVEE 117

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
              P+  TY ++   L ++ +     + F EM +N  +P P+   T I  L  A E + A
Sbjct: 118 SIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEA 177

Query: 380 IEIWNYILENGILPLEA---SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           + +   ++E   L L     +   ++ GL    RL D  +F EEM    +   EVT   L
Sbjct: 178 LRV---MIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNL 234

Query: 437 KKAF 440
              F
Sbjct: 235 VHGF 238


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 157/353 (44%), Gaps = 12/353 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G +L+   +N +++ L K G+F Q       M   G    + T+ +I +  C  G+   A
Sbjct: 187 GLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAA 246

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
              F  M   G + DVV  ++++ ++C+ + + + AL+  + +K K + P+  ++  L++
Sbjct: 247 AGLFRKMGEAGCQPDVVTYSTIIDSLCK-DRRVNEALDIFSYMKAKGISPNIFTYNSLIQ 305

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G        EA+    EM+      P +++ +   +    +   V EA   L+ M     
Sbjct: 306 GLCNFSRWREASAMLNEMMS-LNIMP-NIVTFSLLINIFCKEGNVFEARGVLKTMTEMGV 363

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P +  +S+ ++      +   A +L+D+M+   G  PD  +YN++     K KR+ E +
Sbjct: 364 EPNVVTYSSLMNGYSLQAEVVEARKLFDVMIT-KGCKPDVFSYNILINGYCKAKRIGEAK 422

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           + F+EMI     P  ++  T I  L        A +++  +L NG LP   + + LL G 
Sbjct: 423 QLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGF 482

Query: 406 RNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
              G L+   R    M    L   +++Y + +  + K+     +  R +F  L
Sbjct: 483 CKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKS--RNLKEARKLFSEL 533



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 139/311 (44%), Gaps = 7/311 (2%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A+D F +  + + +SP  + +N ++  L    R+ +    +  M    ++ ++ TF+ + 
Sbjct: 281 ALDIFSYM-KAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLI 339

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           + +C  G   EA      M+  GVE +VV  +SL++    Q         F   + K   
Sbjct: 340 NIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCK 399

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  S+ IL+ G+ K   + EA + F EM+ +    P+ +++Y T +  L +  ++ EA 
Sbjct: 400 PDVFSYNILINGYCKAKRIGEAKQLFNEMIHQ-GLTPD-IVSYNTLIDGLCQLGRLREAH 457

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
              + M      P L  +S  LD   K      A +L+  M   +   P+ + YN++ + 
Sbjct: 458 DLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLK-PNMVMYNILIDA 516

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           + K++ + E  K F E+     QP      T I  L      + A+E +  + E+G  P 
Sbjct: 517 MCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPN 576

Query: 395 EASANELLVGL 405
           E S N ++ G 
Sbjct: 577 EFSYNVIIRGF 587



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 136/315 (43%), Gaps = 6/315 (1%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167
           LSP  Y  +++++   +  R +  ++ + +++K    L++ TF ++ +  C  GK+ +AV
Sbjct: 153 LSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAV 212

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227
             FD M   G + DV    ++++ +C+     + A  F    +    PD  +++ +++  
Sbjct: 213 ELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSL 272

Query: 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
            K+  V EA   F  M  + +    ++  Y + +  L    +  EA   L  M   N  P
Sbjct: 273 CKDRRVNEALDIFSYM--KAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMP 330

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
            +  FS  ++I  K  +   A  +   M    G  P+ +TY+ +         V E  K 
Sbjct: 331 NIVTFSLLINIFCKEGNVFEARGVLKTMTEM-GVEPNVVTYSSLMNGYSLQAEVVEARKL 389

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           F  MI    +P   +    I     A     A +++N ++  G+ P   S N L+ GL  
Sbjct: 390 FDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQ 449

Query: 408 LGRLSDVRRFAEEML 422
           LGRL +     + ML
Sbjct: 450 LGRLREAHDLFKNML 464



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 96/208 (46%), Gaps = 7/208 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G +   +++N++++   K  R  +       M   G+   + ++ ++ D  C  G+  E
Sbjct: 396 KGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLRE 455

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A   F  M  +G   D+   + LL   C+Q    ++A      ++   + P+   + IL+
Sbjct: 456 AHDLFKNMLTNGNLPDLCTYSILLDGFCKQ-GYLAKAFRLFRAMQSTYLKPNMVMYNILI 514

Query: 225 EGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +   K  N++EA K F E+ V+  + N   V  Y T +  L +   +DEAL+  R M+ +
Sbjct: 515 DAMCKSRNLKEARKLFSELFVQGLQPN---VQIYTTIINGLCKEGLLDEALEAFRNMEED 571

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQL 311
            C P    ++  +   ++  D + AVQL
Sbjct: 572 GCPPNEFSYNVIIRGFLQHKDESRAVQL 599



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 61/142 (42%)

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           + +D+AL +   M      P +  F+  L  +VK+     AV      M   G  PD+ T
Sbjct: 100 RNIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYT 159

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
            +M+  C  + +RV        ++IK   Q T +   T I  L    +   A+E+++ ++
Sbjct: 160 LHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMV 219

Query: 388 ENGILPLEASANELLVGLRNLG 409
             G  P   +   ++ GL  +G
Sbjct: 220 ARGYQPDVHTYTTIINGLCKIG 241


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 140/317 (44%), Gaps = 26/317 (8%)

Query: 117 NLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
            +++ VL   GR     +   ++ K D      T+ ++ D +   G+    +  ++ M  
Sbjct: 348 TVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKA 407

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVE 234
            G   +VVA  +++ A+C Q  +   ALE  + +K K + P+  S+  L+ G+ K     
Sbjct: 408 DGYNDNVVAYTAVIDALC-QVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKA---- 462

Query: 235 EANKTFGEMVERFEWNPEHVL---AYETFLITLIRGKQVD--EALKFLRVMKGENCFPTL 289
                FG+ +E F++   H      Y   L     GK  +  +A++   +MK +   P +
Sbjct: 463 ---DRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDV 519

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFH-----GAFPDSLTYNMIFECLIKNKRVHEV 344
              +  L  L K      + +L     VFH     G  PD++TY M+ +C  K  +  E 
Sbjct: 520 VAGNAVLFGLAK------SGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEA 573

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            K F++MI+N   P  L   + I  L  A   + A +I+  + E  + P + + N LL G
Sbjct: 574 VKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAG 633

Query: 405 LRNLGRLSDVRRFAEEM 421
           L   G++ +V    EEM
Sbjct: 634 LGREGKVKEVMHLLEEM 650



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 154/372 (41%), Gaps = 53/372 (14%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           D++H +   S D P+ A++ FR A R  R+  +  + N M+D++  +GR   M     VM
Sbjct: 138 DVIHALR--SADGPAEALERFRSAARRPRVVHTTASCNYMLDLMRDHGRVGDMAEVFDVM 195

Query: 140 KEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           +   V  ++ TFA+IF      G    A ++  VM   G+  +    N L+  + +    
Sbjct: 196 QRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKS-GF 254

Query: 199 TSRALEFLNRVKKIVDPDG-----DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
              ALE    V K++  DG      ++++L+  + K  +VE       EM E     P +
Sbjct: 255 DREALE----VYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM-EAHGVKP-N 308

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V +Y   +  L + ++ DEA + L  M+ E C                            
Sbjct: 309 VYSYTICIRVLGQARRFDEAYRILAEMENEGC---------------------------- 340

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
                    PD +T+ ++ + L    R+ + +  F +M K++ +P  +   T +    D 
Sbjct: 341 --------KPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADN 392

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 433
            E +  +EIWN +  +G      +   ++  L  +GR+ +     +EM  + I+  + + 
Sbjct: 393 GESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSY 452

Query: 434 HKLKKAFYNESR 445
           + L   F    R
Sbjct: 453 NSLISGFLKADR 464



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 154/376 (40%), Gaps = 51/376 (13%)

Query: 96  SSAVDFFRWAGRGQR------------LSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           +S +D    AGRG              L P    +N ++  LG+ G+ +++ + +  M  
Sbjct: 593 NSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYH 652

Query: 142 DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
                +L T+ +I D  C  G  ++A+     M+  G   D+ + N+++  + ++E + +
Sbjct: 653 SNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEE-RYN 711

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----------------- 243
            A     ++KK++ PD  +   +L  + K G ++EA     E                  
Sbjct: 712 EAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCHSLM 771

Query: 244 ------------VERFEWNPEHVLAYETFLIT-----LIRGKQVDEALKFLRVMKGENCF 286
                       +E  E      +  + F +      L + K+  EA + ++  K     
Sbjct: 772 EGILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVS 831

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
                +++ +  LV  N    A  L+  M    G  PD  TYN++ + + K+ R+ E+ K
Sbjct: 832 LKTGSYNSLICGLVDENLIDIAEGLFAEMKEL-GCGPDEFTYNLLLDAMGKSMRIEEMLK 890

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
              EM +  ++ T +   T I+ L+ +   E AI+++  ++  G  P   +   LL GL 
Sbjct: 891 VQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLL 950

Query: 407 NLGRLSDVRRFAEEML 422
             GR+ D      EML
Sbjct: 951 KAGRIEDAENLFNEML 966



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 123/288 (42%), Gaps = 18/288 (6%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAV-MSFD 171
            + +NL++D +GK+ R E+M      M   G  S   T+ +I      + + ++A+ + ++
Sbjct: 870  FTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYN 929

Query: 172  VMSMHGVEQDVVAVNSLLSAICRQ------ENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
            +MS  G          LL  + +       EN  +  LE+  +    +      + ILL 
Sbjct: 930  LMS-QGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTI------YNILLN 982

Query: 226  GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            G    GN E+    F +MV++   NP+ + +Y   + TL +  Q+++ L + R +     
Sbjct: 983  GHRIAGNTEKVCHLFQDMVDQ-GINPD-IKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGL 1040

Query: 286  FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
             P L  ++  +D L K      AV L++ M    G  P+  TYN +   L K  +  E  
Sbjct: 1041 EPDLITYNLLIDGLGKSKRLEEAVSLFNEMQK-KGIVPNLYTYNSLILHLGKAGKAAEAG 1099

Query: 346  KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            K + E++   W+P        I     +   + A   +  ++  G LP
Sbjct: 1100 KMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLP 1147



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/358 (21%), Positives = 150/358 (41%), Gaps = 13/358 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L+ Y +N +V  L K+G   +     +VM  DGV+ S+ T++ +  ++      +  
Sbjct: 234 GIVLNAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETV 293

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAI--CRQENQTSRAL-EFLNRVKKIVDPDGDSFAIL 223
           +     M  HGV+ +V +    +  +   R+ ++  R L E  N   K   PD  +  +L
Sbjct: 294 LWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCK---PDVITHTVL 350

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++     G + +A   F +M ++ +  P+ V  Y T L       +    ++    MK +
Sbjct: 351 IQVLCDAGRISDAKDVFWKM-KKSDQKPDRV-TYITLLDKFADNGESQSVMEIWNAMKAD 408

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
                +  ++  +D L ++     A++++D M    G  P+  +YN +    +K  R  +
Sbjct: 409 GYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQ-KGIVPEQYSYNSLISGFLKADRFGD 467

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
             + F  M  +  +P        I     + E   AI+ +  +   GI+P   + N +L 
Sbjct: 468 ALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLF 527

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR---SMRDIFDSLERRC 458
           GL   GRL   +R   E+    +    +T   + K     S+   +++  +D +E  C
Sbjct: 528 GLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNC 585



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 123/284 (43%), Gaps = 16/284 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A N ++  L K+GR          +K  GV     T+  +      A K+DEAV  F  M
Sbjct: 521 AGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDM 580

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
             +    DV+ VNSL+  +  +  +   A +   ++K++ ++P   ++  LL G  +EG 
Sbjct: 581 IENNCVPDVLVVNSLIDTL-YKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGK 639

Query: 233 VEEANKTFGEMVERFEWN-PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           V+E      EM   +  N P +++ Y T L  L +   V++AL  L  M  + C P L  
Sbjct: 640 VKEVMHLLEEM---YHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSS 696

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK----NKRVHEVEKF 347
           ++  +  LVK      A  ++  M       PD  T   I    +K     + +H ++++
Sbjct: 697 YNTVIYGLVKEERYNEAFSIFCQMKKV--LIPDYATLCTILPSFVKIGLMKEALHIIKEY 754

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
           F   ++   +    +C + +  +L     E +IE    I  +GI
Sbjct: 755 F---LQPGSKTDRSSCHSLMEGILKKAGTEKSIEFAEIIASSGI 795



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 138/322 (42%), Gaps = 22/322 (6%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            ++N ++  L K  R+ + ++    MK+  +    T  +I  S+   G   EA+       
Sbjct: 696  SYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKEYF 755

Query: 175  MH-GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG---DSFAI--LLEGWE 228
            +  G + D  + +SL+  I ++   T +++EF     +I+   G   D F +  L++   
Sbjct: 756  LQPGSKTDRSSCHSLMEGILKKAG-TEKSIEF----AEIIASSGITLDDFFLCPLIKHLC 810

Query: 229  KEGNVEEANKTFGEMVERFE--WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
            K+    EA+    E+V++F+         +Y + +  L+    +D A      MK   C 
Sbjct: 811  KQKKALEAH----ELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCG 866

Query: 287  PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH--GAFPDSLTYNMIFECLIKNKRVHEV 344
            P    ++  LD + K   S    ++  +    H  G     +TYN I   L+K++R+ + 
Sbjct: 867  PDEFTYNLLLDAMGK---SMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQA 923

Query: 345  EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
               ++ ++   + PTP      +  LL A   E A  ++N +LE G        N LL G
Sbjct: 924  IDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNG 983

Query: 405  LRNLGRLSDVRRFAEEMLNRRI 426
             R  G    V    ++M+++ I
Sbjct: 984  HRIAGNTEKVCHLFQDMVDQGI 1005


>gi|357156708|ref|XP_003577549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Brachypodium distachyon]
          Length = 522

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 113/266 (42%), Gaps = 25/266 (9%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM- 173
           A++ +VD LG+  +F+  W  V     DG  +  TFA +   Y  AG   +AV +FD M 
Sbjct: 116 AYDAVVDALGRAHQFDAAWRLVVEAAADGAATSRTFAVLARRYVAAGMTRQAVRAFDDME 175

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +  G E D     +LL  +C+ +     A E  N+ K   +P+   + IL+ GW K    
Sbjct: 176 AFVGREPDAGEFTTLLDTLCKYKYPKV-ATEVFNKRKYKYEPNEKMYTILIYGWCKVNRN 234

Query: 234 EEANKTFGEMVER-FEWNPEHVLAYETFLITLIR----------GKQVDEALKFLRVMKG 282
           + + K   +M++   E N   V+ Y   L  + R           + V  A   L+ M+ 
Sbjct: 235 DMSQKFLKDMIDHGIEPN---VVTYNILLNGVCRHASLHPDNRFDRTVRAAEDLLKEMRD 291

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM---MVFHGAFPDSLTYNMIFECLIKNK 339
               P +  +S    I++ +    H  +L   M   M   G  P   TY  + +CL    
Sbjct: 292 RGIEPDVTSYS----IVLHVYSRAHKAELCLCMFRSMKDRGICPTVATYTSVIKCLASCG 347

Query: 340 RVHEVEKFFHEMIKNEWQPTP--LNC 363
           R+ + E+  HEM      P+P   NC
Sbjct: 348 RLEDAERLLHEMASEGVCPSPATYNC 373



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 104/266 (39%), Gaps = 50/266 (18%)

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--------NQTSRALE-FL 206
            +C   + D +      M  HG+E +VV  N LL+ +CR          ++T RA E  L
Sbjct: 227 GWCKVNRNDMSQKFLKDMIDHGIEPNVVTYNILLNGVCRHASLHPDNRFDRTVRAAEDLL 286

Query: 207 NRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
             ++ + ++PD  S++I+L  + +    E     F  M +R    P  V  Y + +  L 
Sbjct: 287 KEMRDRGIEPDVTSYSIVLHVYSRAHKAELCLCMFRSMKDR-GICPT-VATYTSVIKCLA 344

Query: 266 RGKQVDEALKFLRVMKGE---------NCF----------------------------PT 288
              ++++A + L  M  E         NCF                            P 
Sbjct: 345 SCGRLEDAERLLHEMASEGVCPSPATYNCFFKEYRGRKDVIGALELYKKMKAPASPTAPD 404

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  +   L + VKLN      +LW+ M       PD  +Y ++     +N++  E  +FF
Sbjct: 405 IHSYHILLGMFVKLNQHGTVTELWNDM-CESTVGPDLDSYTLLIHGFCENEKWREACQFF 463

Query: 349 HEMIKNEWQPTPLNCATAITMLLDAD 374
            EMI+  + P  +        L+ AD
Sbjct: 464 MEMIEKGFLPQKITFEILYRGLIQAD 489


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 140/297 (47%), Gaps = 5/297 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     KYD  +     M + G+  D+   N +++  C    Q S AL  
Sbjct: 84  SIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFC-CCFQVSLALSI 142

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  +   L+ G+ +   V +A     +MVE   + P+ ++AY   + +L
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE-IGYKPD-IVAYNAIIDSL 200

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            + K+V++A  F + ++ +   P +  ++  ++ L   +  + A +L   M +     P+
Sbjct: 201 CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKKITPN 259

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TY+ + +  +KN +V E ++ F EM++    P  +  ++ +  L   D  + A ++++
Sbjct: 260 VITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFD 319

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
            ++  G L    S N L+ G     R+ D  +   EM  R ++   VT + L + F+
Sbjct: 320 LMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFF 376



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 129/279 (46%), Gaps = 5/279 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T  S+ + +C   +  +AV   D M   G + D+VA N+++ ++C+ + + + A +F   
Sbjct: 157 TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTK-RVNDAFDFFKE 215

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + +K + P+  ++  L+ G        +A +   +M+++ +  P +V+ Y   L   ++ 
Sbjct: 216 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK-KITP-NVITYSALLDAFVKN 273

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +V EA +    M   +  P +  +S+ ++ L   +    A Q++D +MV  G   D ++
Sbjct: 274 GKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFD-LMVSKGCLADVVS 332

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +     K KRV +  K F EM +       +   T I     A + + A E ++ + 
Sbjct: 333 YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD 392

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
             GI P   + N LL GL + G L       E+M  R +
Sbjct: 393 FFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 431



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/327 (20%), Positives = 137/327 (41%), Gaps = 4/327 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G +    A+N ++D L K  R    ++  + ++  G+  ++ T+ ++ +  C + ++ +A
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
                 M    +  +V+  ++LL A  +          F   V+  +DPD  +++ L+ G
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNG 304

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
                 ++EAN+ F  MV +       V++Y T +    + K+V++ +K  R M      
Sbjct: 305 LCLHDRIDEANQMFDLMVSK--GCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLV 362

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
                ++  +    +  D   A + +   M F G  PD  TYN++   L  N  + +   
Sbjct: 363 SNTVTYNTLIQGFFQAGDVDKAQEFFS-QMDFFGISPDIWTYNILLGGLCDNGELEKALV 421

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            F +M K E     +   T I  +    + E A  ++  +   G+ P   +   ++ GL 
Sbjct: 422 IFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLC 481

Query: 407 NLGRLSDVRRFAEEMLNRRILIYEVTM 433
             G L +V     +M    ++  + T+
Sbjct: 482 TKGLLHEVEALYTKMKQEGLMKNDCTL 508



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 1/183 (0%)

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
           T +R  ++++A+     M     FP++  F+  L  +VKL      + L   M V  G  
Sbjct: 59  TRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVL-GIR 117

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
            D  T+N++  C     +V        +M+K  ++P  +   + +      +    A+ +
Sbjct: 118 NDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
            + ++E G  P   + N ++  L    R++D   F +E+  + I    VT   L     N
Sbjct: 178 VDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCN 237

Query: 443 ESR 445
            SR
Sbjct: 238 SSR 240



 Score = 42.7 bits (99), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 10/102 (9%)

Query: 97  SAVDFFRWAGRGQRLSPYAW--NLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASI 153
           S +DFF        +SP  W  N+++  L  NG  E+       M K +  L + T+ ++
Sbjct: 389 SQMDFFG-------ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTV 441

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
               C  GK +EA   F  +S+ G++ D+V   +++S +C +
Sbjct: 442 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTK 483


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 113/259 (43%), Gaps = 8/259 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF S+ D Y   GK ++A    D M   G+E DVV+ N+L+   CR        + F   
Sbjct: 545 TFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEM 604

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K V P   ++ I+L G   +G    A K   EM+E        +      L  L R  
Sbjct: 605 LSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIE--SGTTMDISTCGIILGGLCRNN 662

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
             DEA+   + +   N    +   +  +D + K+     A +L+D +    G  P++ TY
Sbjct: 663 CDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISA-TGLVPNASTY 721

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI-- 386
            ++ + L+K   V E +  F  M K+   P+       I +LL+  E    ++  NY+  
Sbjct: 722 GVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNYIIRVLLEKGE---IVKAGNYMFK 778

Query: 387 LENGILPLEASANELLVGL 405
           ++   + LEAS   LL+ L
Sbjct: 779 VDGKRISLEASTVSLLMAL 797



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 136/310 (43%), Gaps = 4/310 (1%)

Query: 98  AVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFD 155
           A +FF   A +G + +   +++++      G F  M N    M+ +G+++    F  + D
Sbjct: 351 AAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVID 410

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
           +Y   G  DE ++ F  M   GV  D      +++A  R         +F   +   + P
Sbjct: 411 AYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKP 470

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           +G  +  L++G+   GN+ +A +   EM+ R    P +++ + + + +L +  +V EA  
Sbjct: 471 EGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRP-NIVFFNSIINSLCKEGRVVEAHD 529

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
               +      P +  F++ +D    +     A  + D  M+  G  PD ++YN + +  
Sbjct: 530 IFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLD-AMISAGIEPDVVSYNTLIDGY 588

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
            +N R+ +    F EM+    +PT +     +  L +      A ++ + ++E+G     
Sbjct: 589 CRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDI 648

Query: 396 ASANELLVGL 405
           ++   +L GL
Sbjct: 649 STCGIILGGL 658



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 132/334 (39%), Gaps = 5/334 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N M+     +G++++     R M   G++ ++ T  S   S C  GK  EA   FD M+
Sbjct: 300 YNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMA 359

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G + ++V  + LL      E      L   N ++   +  D   F I+++ + K G +
Sbjct: 360 AKGHKPNLVTYSVLLHGYA-TEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMM 418

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +E    F +M E  +        Y   +    R  ++ +A+     M      P    + 
Sbjct: 419 DETMLIFTQMQE--QGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYH 476

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
           + +       +   A +L   MM      P+ + +N I   L K  RV E    F  +I 
Sbjct: 477 SLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIH 536

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
              +P  +   + I       + E A  + + ++  GI P   S N L+ G    GR+ D
Sbjct: 537 IGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDD 596

Query: 414 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
                 EML++ +    +T   +    +N+ R++
Sbjct: 597 GLILFGEMLSKGVKPTTITYGIILHGLFNDGRTV 630



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/315 (19%), Positives = 124/315 (39%), Gaps = 6/315 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLS--LPTFASIFDSYCGAGKYDEAVMSFD 171
           ++N +V  L ++ R ++  + +  M K+ G  S  + T+ ++       G+  +A   F 
Sbjct: 192 SYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFH 251

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M   GV  DVV   S++ A+C+        L     +     P+  ++  ++ G+   G
Sbjct: 252 EMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISG 311

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             +E    F EM    +    +++   +++ +L +  +  EA +F   M  +   P L  
Sbjct: 312 QWKETAGMFREMTS--QGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVT 369

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S  L            + L++  M  +G   D   +N++ +   K   + E    F +M
Sbjct: 370 YSVLLHGYATEGCFVDMLNLFN-SMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQM 428

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
            +    P        I           A++ +N ++  G+ P     + L+ G    G L
Sbjct: 429 QEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNL 488

Query: 412 SDVRRFAEEMLNRRI 426
              +    EM++R I
Sbjct: 489 VKAKELVSEMMSRGI 503



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/302 (20%), Positives = 120/302 (39%), Gaps = 42/302 (13%)

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI---VDPDGDSFAILLEGWEKEGNV 233
           GVE D ++ N+++  +C +++++ RAL+ L+ + K      P+  ++  ++ G  +EG V
Sbjct: 185 GVEPDTISYNTVVKTLC-EDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEV 243

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A   F EM++  +     V+ Y + +  L + + +D+A   LR M   N F   K   
Sbjct: 244 SKACNLFHEMMQ--QGVVPDVVTYTSIIDALCKARAMDKAELVLRQMI-SNGFQPNKVTY 300

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
           N +     ++            M   G  P+ +T N     L K+ +  E  +FF  M  
Sbjct: 301 NCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAA 360

Query: 354 NEWQPTPL------------NCATAITMLLDADEP----------EIAIE---------- 381
              +P  +             C   +  L ++ E            I I+          
Sbjct: 361 KGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDE 420

Query: 382 ---IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
              I+  + E G++P   +   ++     +GRL+D      +M+   +    +  H L +
Sbjct: 421 TMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQ 480

Query: 439 AF 440
            F
Sbjct: 481 GF 482



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 110/278 (39%), Gaps = 14/278 (5%)

Query: 190 SAICRQENQTSRALEFLNRV------KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           SA CR  +  S A+   NR+       ++  P   ++ IL++   +          FG  
Sbjct: 88  SAACR--DGPSLAVALFNRICREEARPRVALPTVCTYNILMDCCCRTRRPTVGFALFGRF 145

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFL-RVMKGENCFPTLKFFSNALDILVKL 302
           ++        V+     L  L   K+ D+ +  L   M      P    ++  +  L + 
Sbjct: 146 LK--TGLKMDVIVASILLKCLYHAKRSDDVVNLLLHRMPELGVEPDTISYNTVVKTLCED 203

Query: 303 NDSTHAVQLWDIMMVFHGAF-PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
           + S  A+ L   M+   G   P+ +TYN +   L +   V +    FHEM++    P  +
Sbjct: 204 SRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVV 263

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
              + I  L  A   + A  +   ++ NG  P + + N ++ G    G+  +      EM
Sbjct: 264 TYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREM 323

Query: 422 LNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSLERR 457
            ++ ++   VT +    +   + +S+   + FDS+  +
Sbjct: 324 TSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAK 361


>gi|326531326|dbj|BAK05014.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 537

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 176/421 (41%), Gaps = 49/421 (11%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGR---FEQMWNAV 136
           D+V +VLQ    +   A+ FF WA         P  +  M+D+LG+  +     Q+++ +
Sbjct: 113 DVVLKVLQKQRSNWQVALLFFTWAAGLPTYEHGPRTYIEMLDILGRMKKVRLMRQLFDEI 172

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
              +   V++   FA + + Y GA K  EA+  F   + +G E D+V    LL ++CR +
Sbjct: 173 PEQRRGLVVTNRMFAVLLNRYAGAHKVQEAIEIFYKRNDYGFEVDLVGFQILLMSLCRYK 232

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           +       FL + K    P   S+ I+L GW  +G++ +A + + E++   +  P+ +  
Sbjct: 233 HVEEAEALFLQK-KDEFPPVIKSWNIILNGWCVKGSLPDAKRVWNEIIAS-KLKPD-LFT 289

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           Y TF+  L +  ++  A+K    M  +   P +   +  +D L        A++++   M
Sbjct: 290 YGTFINALTKAGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKIPEALKIFG-EM 348

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT-------------PLNC 363
              G   D  TYN + +   K +R  +V +   +M K    P              P + 
Sbjct: 349 NDRGCQADVATYNTLIKHFCKIRRTEKVYELLDDMEKKGCSPNNMTYTYILKTTEKPRDV 408

Query: 364 ATAITML------LDADEPEIAI-------------EIWNYILENGILPLEASANELLVG 404
              I  +      LD+D   + +             ++W  +  NG  P + S   ++ G
Sbjct: 409 MNLIQRMEESGCKLDSDTYNLILNLYVSMKYEKGVQQVWEEMERNGSGPDQRSFTIMVHG 468

Query: 405 LRNLGRLSDVRRFAEEMLNR--------RILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
           L + G+L    ++   M +R        RIL+  + + K      + S SM      L+R
Sbjct: 469 LHSQGQLDQALQYYTTMKSRGMTPEPRTRILVKAIHIKKGGPETEDRSPSMTGRNLKLDR 528

Query: 457 R 457
           R
Sbjct: 529 R 529


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 166/404 (41%), Gaps = 54/404 (13%)

Query: 63  ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW-----AGRGQRLSPYAWN 117
           A + ++  A+   GI P+    + VL +S+      VD   W       RG + + Y++ 
Sbjct: 195 AEAMEVYKAMVEDGISPSVR-TYSVLMVSFGKKRD-VDTVLWLLNEMEARGVKPNVYSYT 252

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           + + VLG+  RF++ +  +  M++ G    + T   +    C AG+  +A   F  M   
Sbjct: 253 ICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKAS 312

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD---SFAILLEGWEKEGNV 233
             + D V   +LL   C     +   +E  N +  + D   D   S+  +++   + G +
Sbjct: 313 DQKPDRVTYITLLDK-CGDSGDSQSVMEIWNAM--VADGYNDNIVSYTAVVDALCQVGRL 369

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA   F EM E+   +PE   +Y + +   ++    D AL+    M    C P+   ++
Sbjct: 370 DEALAVFDEMKEK-GISPEQ-YSYNSLISGFLKADMFDRALELFNHMNA--CGPSPNGYT 425

Query: 294 NALDI--LVKLNDSTHAVQLWDIMM-----------------------------VFH--- 319
           + L I    K   S  A+Q ++ M                              VF+   
Sbjct: 426 HVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELK 485

Query: 320 --GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
             G  PD++TY M+ +C  K  +  E   FF +M++    P  L   + I  L    +  
Sbjct: 486 DMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGN 545

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            A ++++ + E  I P   + N LL GL   G++ +V    EEM
Sbjct: 546 EAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEM 589



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 146/342 (42%), Gaps = 37/342 (10%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  LG+ G+ +++ + +  M       +L T+ ++ D     G+ + A+     M+
Sbjct: 566 YNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMT 625

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G   D+ + N+++  + ++E +   A     ++KKI+ PD  +   +L  + K G ++
Sbjct: 626 EKGCTPDLSSYNTVMYGLIKEE-RFEEAFRMFCQMKKILAPDYATLCTILPSFVKNGLMK 684

Query: 235 EANKTFGEMVERFEWNPEH------------------------------VLAYETFLITL 264
           EA  T  E + + + N +                               +L  + FL  L
Sbjct: 685 EALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEKSIEFAENIASRGILLNDFFLCPL 744

Query: 265 IRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           IR     K+  EA +     KG         +++ +  LV  N    A  L+  M    G
Sbjct: 745 IRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRL-G 803

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD  TYN+I + + K+ R+ E+ +   EM +  ++ T +   T I+ L+ +   E AI
Sbjct: 804 CGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAI 863

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
           +++  ++  G  P   +   LL GL   G++ D      EML
Sbjct: 864 DLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEML 905



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 100/436 (22%), Positives = 167/436 (38%), Gaps = 53/436 (12%)

Query: 33  HRPTRPRFPTHLDAPYISSSARIICEI----LAHASSDDIESALACTGIIPTPDLVHEVL 88
            +P R  + T LD    S  ++ + EI    +A   +D+I S  A        D + +V 
Sbjct: 314 QKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVV------DALCQVG 367

Query: 89  QLSYDSPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS 146
           +L  D   +  D  +  G    +SP  Y++N ++    K   F++       M   G   
Sbjct: 368 RL--DEALAVFDEMKEKG----ISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSP 421

Query: 147 LPTFASIFDSYCG-AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
                 +F +Y G +G+  +A+  ++ M   G+  DV A N++LS++ R          F
Sbjct: 422 NGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVF 481

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF------------------ 247
                  V PD  ++ ++++   K    +EA   F +MVE                    
Sbjct: 482 YELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKG 541

Query: 248 -----EWNPEHVL----------AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
                 W   H L           Y T L  L R  +V E +  L  M      P L  +
Sbjct: 542 GKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITY 601

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  LD L K  +   A+ +    M   G  PD  +YN +   LIK +R  E  + F +M 
Sbjct: 602 NTVLDCLSKNGEVNCAIGML-YSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQMK 660

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           K         C    + + +    E    +  YIL+      ++S + L+ G+ N   + 
Sbjct: 661 KILAPDYATLCTILPSFVKNGLMKEALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVE 720

Query: 413 DVRRFAEEMLNRRILI 428
               FAE + +R IL+
Sbjct: 721 KSIEFAENIASRGILL 736



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 109/247 (44%), Gaps = 6/247 (2%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAV-MSFD 171
            + +NL++D +GK+ R E+M      M   G  S   T+ +I      + + ++A+ + ++
Sbjct: 809  FTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYN 868

Query: 172  VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            +MS  G          LL  + +          F   ++    P+   + ILL G    G
Sbjct: 869  LMS-EGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAG 927

Query: 232  NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            N E   + F +MVE+   NP+ + +Y   + TL    ++++ L + R +      P L  
Sbjct: 928  NTENVCQIFEKMVEQ-GINPD-IKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLII 985

Query: 292  FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
            ++  +D L K      AV L++ M    G  P+  TYN +   L K  +  E  + + E+
Sbjct: 986  YNLLIDGLGKSERIEEAVCLFNEMKK-KGIVPNLYTYNSLILHLGKAGKASEAAQMYEEL 1044

Query: 352  IKNEWQP 358
            +   W+P
Sbjct: 1045 LIKGWKP 1051



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/386 (20%), Positives = 152/386 (39%), Gaps = 51/386 (13%)

Query: 70  SALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNG 127
           +A A TG   T  +VH  +  S   P+ A++ F  A R      +  + N M++++  +G
Sbjct: 68  AAGAGTG---TESVVH--MLRSAPGPAEALELFTAAARQPTAVHTTESCNYMLELMRAHG 122

Query: 128 RFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           R   M     +M++  V  ++ TFA++F      G    A ++  VM   G+  +    N
Sbjct: 123 RVGDMAQVFDLMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYN 182

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
            L+  +                                    K G   EA + +  MVE 
Sbjct: 183 GLIYFLV-----------------------------------KSGFDAEAMEVYKAMVE- 206

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
            +     V  Y   +++  + + VD  L  L  M+     P +  ++  + +L +     
Sbjct: 207 -DGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFD 265

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            A Q+    M   G  PD +T+ ++ + L    R+ + +  F +M  ++ +P  +   T 
Sbjct: 266 EAYQILG-KMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITL 324

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           +    D+ + +  +EIWN ++ +G      S   ++  L  +GRL +     +EM  + I
Sbjct: 325 LDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGI 384

Query: 427 LIYEVTMHKLKKAFYNESRSMRDIFD 452
              + + + L   F        D+FD
Sbjct: 385 SPEQYSYNSLISGFLKA-----DMFD 405



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 139/341 (40%), Gaps = 38/341 (11%)

Query: 117  NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
            +LM  +L K G  + +  A  +     +L+      +    C   K  EA   F+     
Sbjct: 708  SLMEGILNKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGL 767

Query: 177  GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
            GV     + NSL+  +   EN    A +    +K++   PD  ++ ++L+   K   +EE
Sbjct: 768  GVSLKTGSYNSLIRGLV-DENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEE 826

Query: 236  ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
              +   EM  R  +   +V  Y T +  L++ K++++A+     +  E   PT   +   
Sbjct: 827  MLRVQAEM-HRKGYESTYV-TYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPL 884

Query: 296  LDILVKLNDSTHAVQLWDIM----------------------------------MVFHGA 321
            LD L+K      A  L++ M                                  MV  G 
Sbjct: 885  LDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGI 944

Query: 322  FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
             PD  +Y ++ + L    R+++   +F ++++   +P  +     I  L  ++  E A+ 
Sbjct: 945  NPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVC 1004

Query: 382  IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
            ++N + + GI+P   + N L++ L   G+ S+  +  EE+L
Sbjct: 1005 LFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELL 1045



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 105/246 (42%), Gaps = 11/246 (4%)

Query: 116  WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            +N++++     G  E +      M E G+   + ++  + D+ C AG+ ++ +  F  + 
Sbjct: 916  YNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLL 975

Query: 175  MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
              G+E D++  N L+  + + E        F    KK + P+  ++  L+    K G   
Sbjct: 976  ELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKAS 1035

Query: 235  EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            EA + + E++ +  W P +V  Y      LIRG  V  +          +C         
Sbjct: 1036 EAAQMYEELLIK-GWKP-NVFTYNA----LIRGYSVSGSTD--NAYAAYDCVAVGVSLKT 1087

Query: 295  AL-DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
            AL   LV  N    A  L+   M   G  PD  TYN+I + + K+ R+ E+ K   E+ +
Sbjct: 1088 ALISGLVDENLINIAEGLF-AEMKRRGCGPDQFTYNLILDAIGKSMRIEEMLKVQEEIAE 1146

Query: 354  NEWQPT 359
            +  Q T
Sbjct: 1147 DLNQLT 1152


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 156/363 (42%), Gaps = 42/363 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCG 159
           F R +  G   +   +N ++++L +N R +  +  + +M  +G+ + + T+  +   YC 
Sbjct: 548 FHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCI 607

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
            G   +A++  + M   G   ++V  N+++   C   N TS AL  L+ ++     PD  
Sbjct: 608 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTS-ALRILDLMRDGGCKPDEW 666

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  L+ G+ K   +E A   F EMV+     P  V  Y   +    + +++D A   L 
Sbjct: 667 SYTELICGFCKISKMESAFGLFNEMVDD-GLCPNEV-TYTALIDGYCKDEKLDTATSLLE 724

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            MK   C P ++ ++  +  L K N+ + A +L  +M +  G FP+ +TY  + + L KN
Sbjct: 725 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVM-IEEGIFPNVVTYTAMIDGLCKN 783

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
                                                  +A+E++N ++E G LP   + 
Sbjct: 784 -----------------------------------GSTSLALEMFNKMIEQGCLPNLLTY 808

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRC 458
           + L+  L   G++ +      E+    ++  E+T  K+ +A Y  S  +   F+ L R  
Sbjct: 809 SSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEA-YIMSGKVEHAFNFLGRMI 867

Query: 459 KTS 461
           K  
Sbjct: 868 KAG 870



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/355 (19%), Positives = 150/355 (42%), Gaps = 22/355 (6%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFA--SIFDS 156
           + R    G + +   +N +++ L K+G    + +A  +MK+  +  +S  TF   S+   
Sbjct: 373 YHRMLSEGVQPNLLIYNAVINALCKDG---NVADAETIMKKVFESEMSPDTFTYTSMILG 429

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI---- 212
           +C     D A+  F+ M+  G E + V  ++L++ +C     + R  E  + ++++    
Sbjct: 430 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC----DSGRVNEAFDLIREMILHG 485

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + P   +    +      G  E+A + F +M  + +    +V  Y   +  L     +  
Sbjct: 486 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDM--KNKGCEPNVYTYTALISGLCVSGLLKV 543

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A+     M  +  FP    ++  ++ILV+     +A  + ++M   +G F + +TYN + 
Sbjct: 544 AIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMG-RNGLFTNIVTYNEMI 602

Query: 333 E--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +  C++ + +  +     + M++       +   T I    D+     A+ I + + + G
Sbjct: 603 KGYCILGDPK--KAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGG 660

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             P E S  EL+ G   + ++        EM++  +   EVT   L   +  + +
Sbjct: 661 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 715



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           + AY   LI L R       +     M  E   P L  ++  ++ L K  +   A  +  
Sbjct: 350 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETI-- 407

Query: 314 IMMVFHGAF-PDSLTYNMIFECLIKNKRVHEVE---KFFHEMIKNEWQPTPLNCATAITM 369
           +  VF     PD+ TY  +   ++ + R H+++   + F++M K   +P  +  +T I  
Sbjct: 408 MKKVFESEMSPDTFTYTSM---ILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLING 464

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           L D+     A ++   ++ +GILP   +    ++ L ++G   D  R   +M N+
Sbjct: 465 LCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNK 519



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 52/271 (19%), Positives = 117/271 (43%), Gaps = 32/271 (11%)

Query: 116  WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEA-------- 166
            ++ ++  LG+ G+ E+  N    ++  G++    T+  + ++Y  +GK + A        
Sbjct: 808  YSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMI 867

Query: 167  -------VMSFDVMSMHGVEQDVVAVNSLLSAI------CRQENQTSR--ALEFLNRVKK 211
                   + ++ V+ + G++ + +  +  L+A+      C    QT+   A+  ++    
Sbjct: 868  KAGCQPTLWTYGVL-IKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLA 926

Query: 212  IVDPDGDSFAI---LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             +DP G S  +   L+      G   EAN+  G M+ +     +   AY + L +L+R +
Sbjct: 927  ELDP-GLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQE--AYNSLLCSLLRVR 983

Query: 269  QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
             VD A+   + M  + C   L  +   +  L +L+    A   ++ M++     PD +  
Sbjct: 984  NVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLM-RTWNPDDVVQ 1042

Query: 329  NMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
             ++ + L+++       +F H M    + P+
Sbjct: 1043 AVLIDGLLRDGYKDLCMEFLHIMETRRYMPS 1073


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 4/248 (1%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
           S + +  ++  + K G+ E     V  M+  G+ L+   F ++ D YC +G  DEA+   
Sbjct: 364 SAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQ 423

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
            VM   G+E DV A NS+ S +C+   +        + V++ V P+  SF  L++ + KE
Sbjct: 424 VVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKE 483

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN  EA + F EM E+   N  +++ Y   +    +   + EA K    ++     P + 
Sbjct: 484 GNFVEAKRVFREMEEK--GNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVY 541

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
             ++ +           A++L+D  M   G  P+ +TY  +   L K+ R  E  K + E
Sbjct: 542 TCTSLIHGECIDGKVDMALKLFD-EMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDE 600

Query: 351 MIKNEWQP 358
           M +    P
Sbjct: 601 MKETGLTP 608



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/351 (20%), Positives = 138/351 (39%), Gaps = 35/351 (9%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
           A +G + +   +N  ++   K      +   + +M+++GV  ++ T+  +   +   GK 
Sbjct: 252 AAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKI 311

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           +EA   F+ M   G+E DV    S++S  CR  N     + F     K + P   ++  L
Sbjct: 312 EEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGAL 371

Query: 224 LEGWEKEGNVEEANKTFGEMVER-FEWNP------------------------------- 251
           + G  K G +E A     EM  +  + NP                               
Sbjct: 372 IHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGL 431

Query: 252 -EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
              V AY +    L +  + DEA   L  M      P    F+  +DI  K  +   A +
Sbjct: 432 ESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKR 491

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           ++   M   G  P+ +TYN++ +   K   + E  K   E+      P    C + I   
Sbjct: 492 VFR-EMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGE 550

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
               + ++A+++++ + + G++P   +   ++ GL   GR  +  +  +EM
Sbjct: 551 CIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEM 601



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCG 159
            F    RG   +  ++  ++D+  K G F +     R M+E G V ++ T+  + D Y  
Sbjct: 458 LFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSK 517

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGD 218
            G   EA    D +   G+  DV    SL+   C  + +   AL+  + + ++ + P+  
Sbjct: 518 RGNMKEAHKLKDELENRGLIPDVYTCTSLIHGEC-IDGKVDMALKLFDEMPQRGLVPNVV 576

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVE 245
           ++  ++ G  K+G  EEA K + EM E
Sbjct: 577 TYTAMISGLSKDGRSEEAFKLYDEMKE 603



 Score = 41.6 bits (96), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 92/243 (37%), Gaps = 5/243 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +F  Y     + EA+ +F+ M   G   D  +    L A+ R+  Q    L F  R+
Sbjct: 158 FDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLAL-RRGGQVDSCLRFFRRM 216

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             + V+    S  I+L+G  K G+VE   K   E+  +      +V+ Y  F+    +  
Sbjct: 217 VNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAK--GVKANVVTYNAFIEGYFKRL 274

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            +    + L +M+ E     +  ++  +     +     A +L++ M    G   D   Y
Sbjct: 275 DLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMRE-KGIEADVYVY 333

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
             I  C  ++  V      F EM      P+       I  +  A + E A  + N +  
Sbjct: 334 TSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQG 393

Query: 389 NGI 391
            GI
Sbjct: 394 KGI 396


>gi|297842741|ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335093|gb|EFH65511.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 780

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 140/326 (42%), Gaps = 10/326 (3%)

Query: 101 FFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYC 158
           FF WA R +RL S  ++ L++D+L ++   +  W  +  +K  GV +    F  +  +Y 
Sbjct: 79  FFIWASRRERLRSGESFGLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYA 138

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDG 217
             G  ++AV SF  M       DV   N +L  + R++     A    N + K    P+ 
Sbjct: 139 KMGLAEKAVESFGRMKEFDCRPDVFTYNVILRIMMREDVFFMLAFAVYNEMLKCNCSPNL 198

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +F IL++G  K+G   +A K F +M  R   +P  V  Y   +  L +    ++A K  
Sbjct: 199 YTFGILMDGLYKKGRTSDAQKMFDDMTGR-GISPNRV-TYTILISGLCQRGSPEDARKLF 256

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH--GAFPDSLTYNMIFECL 335
             MK    +P     +  LD   KL      V+ ++++ +F   G       Y+ + + L
Sbjct: 257 YEMKASGNYPDSVAHNALLDGFCKLG---RMVEAFELLRLFEKDGFVLGLRGYSSLIDGL 313

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
            + +R  +  + +  M+K   +P  +     I  L  A + E A+++   +   GI P  
Sbjct: 314 FRARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKAGKIEDALKLLRSMPSKGITPDT 373

Query: 396 ASANELLVGLRNLGRLSDVRRFAEEM 421
              N ++  L   G L + R    EM
Sbjct: 374 YCYNAVIKALCGRGLLEEGRSLQLEM 399



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 130/313 (41%), Gaps = 11/313 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAV--RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           + +N+++ ++ +   F  +  AV   ++K +   +L TF  + D     G+  +A   FD
Sbjct: 163 FTYNVILRIMMREDVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFD 222

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLEGWEKE 230
            M+  G+  + V    L+S +C Q      A +    +K   + PD  +   LL+G+ K 
Sbjct: 223 DMTGRGISPNRVTYTILISGLC-QRGSPEDARKLFYEMKASGNYPDSVAHNALLDGFCKL 281

Query: 231 GNVEEANKTFGEMVERFEWNP--EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           G + EA     E++  FE +     +  Y + +  L R ++  +A +    M   N  P 
Sbjct: 282 GRMVEAF----ELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKRNIKPD 337

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  ++  +  L K      A++L    M   G  PD+  YN + + L     + E     
Sbjct: 338 IILYTILIQGLSKAGKIEDALKLLR-SMPSKGITPDTYCYNAVIKALCGRGLLEEGRSLQ 396

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            EM + E  P        I  +        A EI+  I ++G  P  A+ N L+ GL   
Sbjct: 397 LEMSETESFPDACTHTILICSMCRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCKS 456

Query: 409 GRLSDVRRFAEEM 421
           G L + R    +M
Sbjct: 457 GELKEARLLLHKM 469



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 135/326 (41%), Gaps = 15/326 (4%)

Query: 94  SPSSAVD-FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFA 151
           SP  A   F+     G      A N ++D   K GR  + +  +R+ ++DG VL L  ++
Sbjct: 248 SPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYS 307

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-K 210
           S+ D    A +Y +A   +  M    ++ D++    L+  + +   +   AL+ L  +  
Sbjct: 308 SLIDGLFRARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKA-GKIEDALKLLRSMPS 366

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
           K + PD   +  +++     G +EE      EM E  E  P+    +   + ++ R   V
Sbjct: 367 KGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSET-ESFPD-ACTHTILICSMCRNGLV 424

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL---- 326
            +A +    ++   C P++  F+  +D L K  +   A  L   M V     P SL    
Sbjct: 425 RKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEV---GRPASLFLRL 481

Query: 327 --TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
             + N  F+ ++++  + +  K           P  ++    I       + + A+++ N
Sbjct: 482 AHSGNRSFDTMVQSGSILKAYKNLAHFADTGNSPDIVSYNVLINGFCREGDIDGALKLLN 541

Query: 385 YILENGILPLEASANELLVGLRNLGR 410
            +   G+ P   + N L+ GL  +GR
Sbjct: 542 VLQLKGLSPDSVTYNTLINGLHRVGR 567



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 121/291 (41%), Gaps = 10/291 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + +++  L K G+ E     +R M   G+      + ++  + CG G  +E       MS
Sbjct: 341 YTILIQGLSKAGKIEDALKLLRSMPSKGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMS 400

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALE--FLNRVKKIVDPDGDSFAILLEGWEKEGN 232
                 D      L+ ++CR  N   R  E  FL   K    P   +F  L++G  K G 
Sbjct: 401 ETESFPDACTHTILICSMCR--NGLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGE 458

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYET--FLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           ++EA     +M      +    LA+       T+++   + +A K L         P + 
Sbjct: 459 LKEARLLLHKMEVGRPASLFLRLAHSGNRSFDTMVQSGSILKAYKNLAHFADTGNSPDIV 518

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            ++  ++   +  D   A++L +++ +  G  PDS+TYN +   L +  R  E  K F+ 
Sbjct: 519 SYNVLINGFCREGDIDGALKLLNVLQL-KGLSPDSVTYNTLINGLHRVGREEEAFKLFYA 577

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
             K++++ +P    + +T      +  +A  +W   L+      + +ANE+
Sbjct: 578 --KDDFRHSPAVYRSLMTWSCRRRKLLVAFNLWMKYLKKISCLDDETANEI 626


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 156/376 (41%), Gaps = 36/376 (9%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASI-FDSYCGAGKYDEAVMSFDVMS 174
           ++++V    + G  E+    +  M   G  +  T  +I  ++ C  G+ D+A    + M 
Sbjct: 288 FDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMG 347

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
            +G   D ++  ++L  +CR E +   A E L   V+K   P+  +F   +    ++G +
Sbjct: 348 SYGCSPDTISYTTVLKGLCRAE-RWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLI 406

Query: 234 EEANKTFGEM----------------------------VERFEWNP--EHVLAYETFLIT 263
           E+A     +M                            +E F   P   + + Y T L  
Sbjct: 407 EQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTG 466

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L   +++D A + L  M  ++C P +  F+  +    +      A++L + MM  HG  P
Sbjct: 467 LCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMME-HGCTP 525

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           + +TYN + + + K+    E  +  H ++ N   P  +  ++ I +L   D  E AI+++
Sbjct: 526 NLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMF 585

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
           + + + G+ P     N++L+ L           F   M++   +  E+T   L +   NE
Sbjct: 586 HIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANE 645

Query: 444 S--RSMRDIFDSLERR 457
              +  RD+   L  R
Sbjct: 646 DFLKETRDLLRELCSR 661



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 125/278 (44%), Gaps = 7/278 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  + +L + G  EQ    +  M E G  +++ T+ ++ + +C  G+ D A+  F  M 
Sbjct: 393 FNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP 452

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
               + + +   +LL+ +C  E   + A      ++K   P+  +F +L+  + ++G ++
Sbjct: 453 ---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMD 509

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA +   +M+E       +++ Y T L  + +    +EAL+ L  +      P +  +S+
Sbjct: 510 EAIELVEQMME--HGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSS 567

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            + +L + +    A++++ I+    G  P ++ YN I   L K         FF  M+ N
Sbjct: 568 IIGVLSREDRVEEAIKMFHIVQDL-GMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSN 626

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
              P  L   T I  L + D  +   ++   +   G+L
Sbjct: 627 GCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVL 664



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 124/306 (40%), Gaps = 39/306 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG + S   + ++++ + K+  F Q    +  M+  G   ++ T+  I +  C  G+ D+
Sbjct: 174 RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDD 233

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    + +S +G + D V+  ++L  +C  +                             
Sbjct: 234 AREFLNRLSSYGFQPDTVSYTTVLKGLCAAKR---------------------------- 265

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            WE   +VEE    F EM+E+    P  V  ++  +    RG  V+ A++ L  M G  C
Sbjct: 266 -WE---DVEE---LFAEMMEK-NCMPNEV-TFDMLVRFFCRGGMVERAIQVLEQMSGHGC 316

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
                  +  ++ + K      A Q  + M  + G  PD+++Y  + + L + +R  + +
Sbjct: 317 AANTTLCNIVINTICKQGRVDDAFQFLNNMGSY-GCSPDTISYTTVLKGLCRAERWEDAK 375

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           +   EM++    P  +   T I +L      E A  +   + E+G      + N L+ G 
Sbjct: 376 ELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGF 435

Query: 406 RNLGRL 411
              GR+
Sbjct: 436 CVQGRV 441



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 110/269 (40%), Gaps = 6/269 (2%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           +  + C  G+  +A          G   DV A N+L++  CR   Q   A   +  +   
Sbjct: 84  LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRY-GQLDAARRLIASMP-- 140

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V PD  ++  ++ G    G V EA     +M+ R    P  V+ Y   L  + +     +
Sbjct: 141 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR-GCQPS-VVTYTVLLEAVCKSTGFGQ 198

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A++ L  M+ + C P +  ++  ++ + +      A +  +  +  +G  PD+++Y  + 
Sbjct: 199 AMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLN-RLSSYGFQPDTVSYTTVL 257

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
           + L   KR  +VE+ F EM++    P  +     +         E AI++   +  +G  
Sbjct: 258 KGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCA 317

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEM 421
                 N ++  +   GR+ D  +F   M
Sbjct: 318 ANTTLCNIVINTICKQGRVDDAFQFLNNM 346



 Score = 45.1 bits (105), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 69/187 (36%), Gaps = 4/187 (2%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V AY T +    R  Q+D A + +  M      P    ++  +  L        A+ L D
Sbjct: 113 VFAYNTLVAGYCRYGQLDAARRLIASMPVA---PDAYTYTPIIRGLCDRGRVGEALSLLD 169

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
            M+   G  P  +TY ++ E + K+    +  +   EM      P  +     I  +   
Sbjct: 170 DML-HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCRE 228

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 433
              + A E  N +   G  P   S   +L GL    R  DV     EM+ +  +  EVT 
Sbjct: 229 GRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTF 288

Query: 434 HKLKKAF 440
             L + F
Sbjct: 289 DMLVRFF 295



 Score = 40.0 bits (92), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 11/147 (7%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D + K+   E+    +  +  +GV   + T++SI        + +EA+  F ++ 
Sbjct: 530 YNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQ 589

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNV 233
             G+    V  N +L A+C++ N T  A++F    V     P+  ++  L+EG   E  +
Sbjct: 590 DLGMRPKAVIYNKILLALCKRCN-TDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFL 648

Query: 234 EEANKTFGEMVERF--------EWNPE 252
           +E      E+  R         EW P+
Sbjct: 649 KETRDLLRELCSRGVLNKNLLEEWRPK 675


>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 660

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 132/300 (44%), Gaps = 7/300 (2%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
           LS   +N ++    + G  ++ +  +  M+ +G    + T+  + + YC  G  ++A   
Sbjct: 363 LSVSIYNALISGFWRAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENL 422

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLEGWE 228
              M   GV  D  + N LL  +C+  +Q  +A  F++   ++    D  S  IL++ + 
Sbjct: 423 ITKMETSGVNPDRYSYNQLLKGLCKT-HQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFC 481

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K   V+ A + F EM   ++      + Y T +  L      + A +    M      P 
Sbjct: 482 KVKKVKSALELFKEM--DYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPN 539

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  ++  L  L K+ D   A +++ + M+     PD +TYN +   L KN R  E    F
Sbjct: 540 VNLYNIMLHHLCKVGDLKRAQKIF-LHMIQKEILPDIVTYNTLIYWLGKNSRAMEALDLF 598

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            +M     +P  L     I  LLD     +A E+W Y++ENGI+ L+   +E L+ +  L
Sbjct: 599 KDMRTKGVEPDSLTFKYLINGLLDEGRSTLAYEVWEYMMENGII-LDREVSERLISVLKL 657



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 148/354 (41%), Gaps = 12/354 (3%)

Query: 111 LSPYAW--NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
            SP  W  N+ +D L K  R       V  M+  G +  + T+ ++    C   ++ EAV
Sbjct: 256 FSPDIWACNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAV 315

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEG 226
             ++ M   G++ DVVA  +L+  +C+  ++   A E  +R+  + ++     +  L+ G
Sbjct: 316 GLWEEMVKMGLKPDVVACGALIFGLCKN-SKVEEAFELASRMLSLNIELSVSIYNALISG 374

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + + G++++A      M  R       V+ Y   L        +++A   +  M+     
Sbjct: 375 FWRAGSIDKAYTIISFM--RTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVN 432

Query: 287 PTLKFFSNALDILVKLNDSTHAVQ-LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
           P    ++  L  L K +    A   + D M V  G F D ++ N++ +   K K+V    
Sbjct: 433 PDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEV--GGFCDIVSCNILIDAFCKVKKVKSAL 490

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           + F EM     Q   +   T I  L       +A E++  +L+  I P     N +L  L
Sbjct: 491 ELFKEMDYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIMLHHL 550

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR--DIFDSLERR 457
             +G L   ++    M+ + IL   VT + L       SR+M   D+F  +  +
Sbjct: 551 CKVGDLKRAQKIFLHMIQKEILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTK 604



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 149/363 (41%), Gaps = 42/363 (11%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P +V+ V++   DS + AV F+ WA    G   S +A   +V +L  +G F  +   +  
Sbjct: 87  PFVVNLVVRGLSDSET-AVRFYWWAESRPGFDHSQFAIAYIVSLLFVDGNFALLSEFLGT 145

Query: 139 MKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           ++  GV L    +  +   Y  AGK+D  + +FD M M G  +  +  N  +  + +   
Sbjct: 146 VRSQGVALHRSLYRILLSGYVRAGKFDSVIGTFDEMVMSGCREFGIDYNRYIGVLIKNCC 205

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
                  +   + K +     +++  +    +   +E   +   +M +RF ++P+ + A 
Sbjct: 206 FDLVEKYYGMALSKGLCLTPFTYSRWISALCQSNRIELVEELLADM-DRFGFSPD-IWAC 263

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
             ++  L +  ++ +AL+ +  M+G+   P +  ++  +  L      + AV LW+  MV
Sbjct: 264 NIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVGLWE-EMV 322

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKF---------------FHEMIKNEWQPTPLN 362
             G  PD +    +   L KN +V E  +                ++ +I   W+   ++
Sbjct: 323 KMGLKPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYNALISGFWRAGSID 382

Query: 363 CATAITMLLDADEPEIAIEIWNYIL------------ENGILPLEASA--------NELL 402
            A  I   +  +  E  +  +N +L            EN I  +E S         N+LL
Sbjct: 383 KAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPDRYSYNQLL 442

Query: 403 VGL 405
            GL
Sbjct: 443 KGL 445



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 4/224 (1%)

Query: 204 EFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
           EFL  V+ + V      + ILL G+ + G  +    TF EMV       E  + Y  ++ 
Sbjct: 141 EFLGTVRSQGVALHRSLYRILLSGYVRAGKFDSVIGTFDEMV--MSGCREFGIDYNRYIG 198

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
            LI+    D   K+  +   +    T   +S  +  L + N      +L   M  F G  
Sbjct: 199 VLIKNCCFDLVEKYYGMALSKGLCLTPFTYSRWISALCQSNRIELVEELLADMDRF-GFS 257

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           PD    N+  +CL K  R+H+  +   +M      P  +   T +  L +      A+ +
Sbjct: 258 PDIWACNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVGL 317

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           W  +++ G+ P   +   L+ GL    ++ +    A  ML+  I
Sbjct: 318 WEEMVKMGLKPDVVACGALIFGLCKNSKVEEAFELASRMLSLNI 361


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 142/312 (45%), Gaps = 13/312 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT----FASIFDSYCGAGKY 163
           G + +P  +  ++  L + G  ++   A+RVM E   L LPT      +I    C A + 
Sbjct: 153 GCKPNPITYGTLIQHLSRAGEIDE---ALRVMIEQRSLELPTDVITCTTIVGGLCKASRL 209

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN--RVKKIVDPDGDSFA 221
           D+A+   + M   GV  + V  ++L+    RQ  +  R + F    + +K    +  ++ 
Sbjct: 210 DDALKFMEEMRQMGVRPNEVTYSNLVHGF-RQHGELDRVIRFFEEEKARKGGSLEAAAYP 268

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
             L+   K G ++ A K+  E+  R       V+ Y   + T  R  Q D +L+ L  M+
Sbjct: 269 GYLDALCKAGYLDRARKSVEEL--RQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMR 326

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
                P +  +S  +++L K      A +L ++M    G+ P+ +TYN + + L K+ ++
Sbjct: 327 RNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEA-AGSPPNVVTYNSVMDGLCKSGKM 385

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            EV + +  M+K+   P  +  +  +  L  A   + A++++  I  +   P  A+ + +
Sbjct: 386 DEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMV 445

Query: 402 LVGLRNLGRLSD 413
           +  L   G+L +
Sbjct: 446 ITSLCRAGKLEE 457



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 151/382 (39%), Gaps = 49/382 (12%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT---FASIFDSY 157
           F   A RG       + L+VD L   G   Q    VR +   GV + PT   +  I    
Sbjct: 42  FTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVREL--SGVYT-PTVFIYNGIITGL 98

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPD 216
           C A +  +A    + M    +  +V     LL+ +CR  N+T  A E    +K+    P+
Sbjct: 99  CRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRS-NKTKLAREVFQEMKRNGCKPN 157

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++  L++   + G ++EA +   E  +R    P  V+   T +  L +  ++D+ALKF
Sbjct: 158 PITYGTLIQHLSRAGEIDEALRVMIE--QRSLELPTDVITCTTIVGGLCKASRLDDALKF 215

Query: 277 LRVMKGENCFPTLKFFSN---------ALDILVKLNDSTHAVQLWDIMMVFH-------- 319
           +  M+     P    +SN          LD +++  +   A +   +    +        
Sbjct: 216 MEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALC 275

Query: 320 ------------------GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                             G  PD +TY+M+     +  +     +   +M +N  +P  +
Sbjct: 276 KAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVV 335

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
             +T I +L    + + A  +   +   G  P   + N ++ GL   G++ +V R  E M
Sbjct: 336 TYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMM 395

Query: 422 LNRR----ILIYEVTMHKLKKA 439
           L  R    ++ Y + M+ L KA
Sbjct: 396 LKSRCSPDVVTYSIIMNGLSKA 417



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 111/253 (43%), Gaps = 6/253 (2%)

Query: 140 KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT 199
           ++ G L    +    D+ C AG  D A  S + +   GV  DVV  + L++   R   Q 
Sbjct: 257 RKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARA-GQF 315

Query: 200 SRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
             +LE L  +++  V PD  +++ L+    KE   ++A +   E++E    +P +V+ Y 
Sbjct: 316 DASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLL-ELME-AAGSPPNVVTYN 373

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
           + +  L +  ++DE  +   +M    C P +  +S  ++ L K      AV+L++++   
Sbjct: 374 SVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSS 433

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM-IKNEWQPTPLNCATAITMLLDADEPE 377
               PD+  Y+M+   L +  ++ E    +H M +           A  +  L DA   +
Sbjct: 434 REG-PDAAAYSMVITSLCRAGKLEEACGMYHGMEVTVAGDNICRALAGLVAALCDAKRTD 492

Query: 378 IAIEIWNYILENG 390
            A  I     E G
Sbjct: 493 SARRIVEVARERG 505



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 92/188 (48%), Gaps = 11/188 (5%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++++++   + G+F+     +  M+ +GV   + T++++ +  C   K+ +A    ++M 
Sbjct: 302 YSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELME 361

Query: 175 MHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
             G   +VV  NS++  +C+  + ++  R  E +  +K    PD  +++I++ G  K G 
Sbjct: 362 AAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMM--LKSRCSPDVVTYSIIMNGLSKAGM 419

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK----GENCFPT 288
           ++ A K F E+++     P+   AY   + +L R  +++EA      M+    G+N    
Sbjct: 420 LDSAVKLF-ELIKSSREGPDAA-AYSMVITSLCRAGKLEEACGMYHGMEVTVAGDNICRA 477

Query: 289 LKFFSNAL 296
           L     AL
Sbjct: 478 LAGLVAAL 485



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 10/228 (4%)

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D  +F +L     +     E  + F  +  R     E    Y+  +  L      ++AL+
Sbjct: 18  DSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETT--YKLVVDGLCGAGMANQALE 75

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
            +R + G    PT+  ++  +  L + +    A ++ +  MV     P+  TY ++   L
Sbjct: 76  LVRELSGVYT-PTVFIYNGIITGLCRASRVMDAYKVLE-KMVEESIVPNVFTYTILLNGL 133

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
            ++ +     + F EM +N  +P P+   T I  L  A E + A+ +   ++E   L L 
Sbjct: 134 CRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRV---MIEQRSLELP 190

Query: 396 A---SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
               +   ++ GL    RL D  +F EEM    +   EVT   L   F
Sbjct: 191 TDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGF 238


>gi|225427504|ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Vitis vinifera]
          Length = 709

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 152/349 (43%), Gaps = 19/349 (5%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLG 124
           D+E AL   G+  T DLV E+L   +     A  FF WAG     S  P A+N M+D+L 
Sbjct: 252 DMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGHQDCYSHEPRAYNEMIDILS 311

Query: 125 ----KNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
               K  +F  + + +  MK +   S+P      I   Y    K+   +  F       V
Sbjct: 312 STKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKY--TEKHLAHLHKFAKKKKIRV 369

Query: 179 --EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
             + ++ A+N LL A+C+  +    A     RVK  V PD +++ IL  GW +  N    
Sbjct: 370 KTQPEINALNLLLDALCKC-SLVEDAQAMFRRVKNKVKPDANTYNILFFGWCRVRNPSRG 428

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA---LKFLRVMKGENCFPTLKFFS 293
            +   EM+E     P+    Y T + +  +   V EA    +F+R        PT K ++
Sbjct: 429 MRVLEEMIE-MGHTPDS-FTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYA 486

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +  LV+ + +    +L   M +  G  PD  TY  + E +    +V E  KF  EM  
Sbjct: 487 IMILALVQSDRTEECFKLIKDM-INSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGN 545

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
             ++P  +     + +L +  + E A+ ++  ++E G +P   + N L+
Sbjct: 546 KGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLI 594


>gi|222631252|gb|EEE63384.1| hypothetical protein OsJ_18196 [Oryza sativa Japonica Group]
          Length = 378

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 119/265 (44%), Gaps = 8/265 (3%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           +  F     S+  AG+   AV  F++M  HG +  V + N LL A+  QE     A +  
Sbjct: 1   MDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALA-QEGLGREANQVF 59

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           +R++    PD  S+  L+  W    N+ EA + + EM+E     P+ V+ + T +  L+R
Sbjct: 60  DRMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLEN-GLKPD-VVVHNTMIEGLLR 117

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
           G++  EA+K   +MK +   P +  ++  +    K      A++ ++ M    G  PD  
Sbjct: 118 GQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDV-GCQPDVA 176

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           TY  +       KR+  V     EM +    P        I +L + + P+ A  I+  +
Sbjct: 177 TYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKM 236

Query: 387 LENGILPLEASANELL----VGLRN 407
           ++ G+ P   + N ++    +G RN
Sbjct: 237 IKKGLEPTIHTYNMMMKSYFLGGRN 261



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/345 (19%), Positives = 133/345 (38%), Gaps = 39/345 (11%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++N ++  L + G   +       M++     L ++ ++  ++C A    EA   ++ M 
Sbjct: 38  SFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEML 97

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
            +G++ DVV  N+++  + R + +      F     K   P+  ++ +L+    K G ++
Sbjct: 98  ENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMD 157

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A + F EM +     P+ V  Y   L+     K++D     L  M  + C P  + ++ 
Sbjct: 158 MAMRCFEEM-QDVGCQPD-VATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNA 215

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            + +L   N    A +++   M+  G  P   TYNM+ +      R +            
Sbjct: 216 LIKLLTNRNMPDDAARIYK-KMIKKGLEPTIHTYNMMMKSYFLGGRNYM----------- 263

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
                 + CA                 +W  +   GI P   S    + G    GR  + 
Sbjct: 264 ------MGCA-----------------VWEEMHRKGICPDVNSYTVFINGHIRHGRPEEA 300

Query: 415 RRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 459
            ++ EEM+ + +   ++  +K    F    +   DI   L ++ K
Sbjct: 301 CKYIEEMIQKGMKTPQIDYNKFAADFSKAGKP--DILYELAQKVK 343


>gi|2462828|gb|AAB72163.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1152

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 145/353 (41%), Gaps = 48/353 (13%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-----------SLPTFASIFDS 156
           G  ++PY++N +++   K G F+  W     M   G+            +L  F  I D+
Sbjct: 340 GFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDA 399

Query: 157 ---------------------YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
                                Y   GK+ EA + FD +    +   +V  N+L+  +C  
Sbjct: 400 RELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCES 459

Query: 196 ENQTSRALEFLNRVK-----KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
            N     LE   R+K     +++ PD  ++  L++G+ K GN+  A + + EM+ R    
Sbjct: 460 GN-----LEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEML-RKGIK 513

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKG-ENCFPTLKFFSNALDILVKLNDSTHAV 309
           P+   AY T  +  +R    D+A +    M   ++  P L  ++  +D L K+ +   A+
Sbjct: 514 PDGY-AYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAI 572

Query: 310 QLW-DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 368
           +    I  V  G  PD +TY  +    ++N +       + EM++    P+ +     I 
Sbjct: 573 EFQRKIFRV--GLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIY 630

Query: 369 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
               A   E A +    + + G+ P   + N LL G+   G + +  R+  +M
Sbjct: 631 GHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKM 683



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 29/274 (10%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAI 222
           ++A   ++ M  HG+   V+  N++L + C +     R  + +L   ++ ++    ++ I
Sbjct: 257 NKASAVYETMIEHGIMPTVITFNTMLDS-CFKAGDLERVDKIWLEMKRRNIEFSEVTYNI 315

Query: 223 LLEGWEKEGNVEEANKTFGEM------VERFEWNPEHVLAYETFLITLIRG--KQ--VDE 272
           L+ G+ K G +EEA +  G+M      V  + +NP            LI G  KQ   D+
Sbjct: 316 LINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNP------------LIEGYCKQGLFDD 363

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A      M     +PT   ++  +  L        A +L   M     A PD ++YN + 
Sbjct: 364 AWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSM-----AAPDVVSYNTLM 418

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
              IK  +  E    F ++   +  P+ +   T I  L ++   E A  +   +    I 
Sbjct: 419 HGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIF 478

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           P   +   L+ G    G LS      +EML + I
Sbjct: 479 PDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGI 512



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 1/174 (0%)

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           L  L   + +++A      M      PT+  F+  LD   K  D     ++W  M   + 
Sbjct: 247 LKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNI 306

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
            F + +TYN++     KN ++ E  +F  +M ++ +  TP +    I         + A 
Sbjct: 307 EFSE-VTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAW 365

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
            + + +L  GI P  ++ N  +  L + GR+ D R     M    ++ Y   MH
Sbjct: 366 GVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMAAPDVVSYNTLMH 419



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 85/403 (21%), Positives = 163/403 (40%), Gaps = 32/403 (7%)

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWNLMVDVLGKNGRFEQMWN 134
           ++  P+L+  VL +    P  A  FF W  R    + S  A+  M+++L +N    + + 
Sbjct: 118 LLTDPNLLIRVLNMIRVKPEIAFRFFNWIQRQSDVKQSRQAFAAMLEILAENDLMSEAYL 177

Query: 135 AVRVMKEDGVLSLPTFA--SIFDS-------------YCGAGKYDEAVMSFDVMSMHGVE 179
                 + G+  +        FD              Y      ++ ++SF+ M   G  
Sbjct: 178 VAERSIDLGMHEIDDLLIDGSFDKLIALKLLDLLLWVYTKKSMAEKFLLSFEKMIRKGFL 237

Query: 180 QDVVAVNSLLSAI--CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
             V   N +L  +   R  N+ S   E +  ++  + P   +F  +L+   K G++E  +
Sbjct: 238 PSVRNCNIVLKVLRDSRMMNKASAVYETM--IEHGIMPTVITFNTMLDSCFKAGDLERVD 295

Query: 238 KTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
           K + EM  R  E++    + Y   +    +  +++EA +F   M+      T   F+  +
Sbjct: 296 KIWLEMKRRNIEFSE---VTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLI 352

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
           +   K      A  + D M+   G +P + TYN+    L    R+ +      E++ +  
Sbjct: 353 EGYCKQGLFDDAWGVTDEMLN-AGIYPTTSTYNIYICALCDFGRIDDAR----ELLSSMA 407

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
            P  ++  T +   +   +   A  +++ +    I P   + N L+ GL   G L   +R
Sbjct: 408 APDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQR 467

Query: 417 FAEEMLNRRILIYEVTMHKLKKAFY-NESRSM-RDIFDSLERR 457
             EEM  + I    +T   L K F  N + SM  +++D + R+
Sbjct: 468 LKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRK 510



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/202 (19%), Positives = 89/202 (44%), Gaps = 6/202 (2%)

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKT 239
           D+   N  +  +C+  N   +A+EF  ++ ++ + PD  ++  ++ G+ + G  + A   
Sbjct: 551 DLTIYNVRIDGLCKVGNLV-KAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNL 609

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           + EM+ +  +    V+ Y   +    +  ++++A ++   MK     P +   +  L  +
Sbjct: 610 YDEMLRKRLY--PSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGM 667

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            K  +   A + +   M   G  P+  +Y M+       ++  EV K + EM+  E +P 
Sbjct: 668 CKAGNIDEAYR-YLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEPD 726

Query: 360 PLNCATAITMLLDADEPEIAIE 381
                 A+   L+ D   +A++
Sbjct: 727 GYT-HRALFKHLEKDHESMALD 747



 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 109 QRLSPYAWNLMVDVLG--KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +RL P      V + G  K GR EQ +     MK+ GV  ++ T  ++    C AG  DE
Sbjct: 616 KRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDE 675

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A      M   G+  +  +   L+S  C  E        +   + K ++PDG +   L +
Sbjct: 676 AYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYTHRALFK 735

Query: 226 GWEKE 230
             EK+
Sbjct: 736 HLEKD 740


>gi|125524449|gb|EAY72563.1| hypothetical protein OsI_00429 [Oryza sativa Indica Group]
          Length = 535

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 169/406 (41%), Gaps = 63/406 (15%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAG------RGQRLSPYAWNLMVDVLGKNGR---FEQM 132
           D+V +VLQ    +   A+ FF+WA        G R    A+  M+D+LG+  +     Q+
Sbjct: 113 DVVLKVLQKQRSNWKVALSFFKWAAGLPQYNHGSR----AYTEMLDILGRMKKVRLMRQL 168

Query: 133 WNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
           ++ + +     V++   FA + + Y GA K  EA+  F     +G E D+V    LL ++
Sbjct: 169 FDEIPMESRQSVITNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSL 228

Query: 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           CR ++       FL + K    P   S+ I+L GW  +G++ +A + + E++   +  P+
Sbjct: 229 CRYKHVEEAEALFLQK-KDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIAS-KLKPD 286

Query: 253 HVLAYETFLITLIRG-----------------------------------KQVDEALKFL 277
            +  Y TF+ +L +                                    K++ EAL+  
Sbjct: 287 -LFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIF 345

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M    C   +  ++  +    K+N      +L D M V  G  P+++TY+ I +   K
Sbjct: 346 GEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEV-KGVSPNNMTYSYILKTTEK 404

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
            K   +V      M K+  +         + + +  D  +    +W+ +  NG  P + S
Sbjct: 405 PK---DVISLMQRMEKSGCRLDSDTYNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQRS 461

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNR--------RILIYEVTMHK 435
              ++ GL + G+L +   +   M +R        ++L+  + M K
Sbjct: 462 FTIMVHGLHSHGKLDEALHYYRTMESRGMTPEPRTKLLVKAIRMKK 507



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 114/267 (42%), Gaps = 15/267 (5%)

Query: 115 AWNLMVD---VLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           +WN++++   V G     +++WN +   K      L T+ +  +S   +GK   AV  F 
Sbjct: 254 SWNIILNGWCVKGSLADAKRVWNEIIASKLKP--DLFTYGTFINSLTKSGKLSTAVKLFT 311

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKE 230
            M   G+  DV   N ++  +C ++ +   ALE    +  +    D  ++  L++ + K 
Sbjct: 312 SMWEKGINPDVAICNCIIDQLCFKK-RIPEALEIFGEMNDRGCQADVATYNTLIKHFCKI 370

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             +E+  +   +M E    +P + + Y   L T  + K V   +  ++ M+   C     
Sbjct: 371 NRMEKVYELLDDM-EVKGVSPNN-MTYSYILKTTEKPKDV---ISLMQRMEKSGCRLDSD 425

Query: 291 FFSNALDILVKLNDSTHAVQL-WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
            ++  L++ V   D    VQL WD  M  +G+ PD  ++ ++   L  + ++ E   ++ 
Sbjct: 426 TYNLILNLYVSW-DYEKGVQLVWD-EMERNGSGPDQRSFTIMVHGLHSHGKLDEALHYYR 483

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEP 376
            M      P P        + +  DEP
Sbjct: 484 TMESRGMTPEPRTKLLVKAIRMKKDEP 510


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 149/349 (42%), Gaps = 7/349 (2%)

Query: 76  GIIPTPDLVHEVLQLSYDS--PSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G++P   +   + Q  +    PS            G + + Y + + +  L +  + E+ 
Sbjct: 228 GLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEA 287

Query: 133 WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
                +MK  GV+ +L T++++ D YC  G   +A   +  + +  +  +VV   +L+  
Sbjct: 288 EKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDG 347

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
            C+     +    F++ VK  VDP+   +  L+ G  K GN+ EA     EM E    +P
Sbjct: 348 FCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEM-ESLNLSP 406

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V  Y   +  L   +++ EA +  + MK E  FP+   +++ +    K  +   A+ L
Sbjct: 407 D-VFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDL 465

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
               M   G  P+ +T++ + +   K + +      + EM      P  +   T I    
Sbjct: 466 CS-EMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHF 524

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 420
                + A+ +++ +LE GI P + +   L+ G    GRLSD   F  E
Sbjct: 525 KEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLE 573


>gi|147782978|emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera]
          Length = 708

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 152/349 (43%), Gaps = 19/349 (5%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLG 124
           D+E AL   G+  T DLV E+L   +     A  FF WAG     S  P A+N M+D+L 
Sbjct: 225 DMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGHQDCYSHEPRAYNEMIDILS 284

Query: 125 ----KNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
               K  +F  + + +  MK +   S+P      I   Y    K+   +  F       V
Sbjct: 285 STKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKY--TEKHLAHLHKFAKKKKIRV 342

Query: 179 --EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
             + ++ A+N LL A+C+  +    A     RVK  V PD +++ IL  GW +  N    
Sbjct: 343 KTQPEINALNLLLDALCKC-SLVEDAQAMFRRVKNKVKPDANTYNILFFGWCRVRNPSRG 401

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA---LKFLRVMKGENCFPTLKFFS 293
            +   EM+E     P+    Y T + +  +   V EA    +F+R        PT K ++
Sbjct: 402 MRVLEEMIE-MGHTPDS-FTYNTAIDSFCKAGMVTEATELFEFMRTKGSTMSSPTAKTYA 459

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +  LV+ + +    +L   M +  G  PD  TY  + E +    +V E  KF  EM  
Sbjct: 460 IMILALVQSDRTEECFKLIKDM-INSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGN 518

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
             ++P  +     + +L +  + E A+ ++  ++E G +P   + N L+
Sbjct: 519 KGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLI 567


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 152/350 (43%), Gaps = 10/350 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+ +++  L +  R E+    +R M+E G  + +  F ++  +    G+  +A+   D +
Sbjct: 47  AYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEV 106

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
               +E D+V  N  +    +  N    A +F + +K + + PD  S+  ++    K G 
Sbjct: 107 KGSCLEPDIVLYNVCIDCFGKAGN-VDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGR 165

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + EA + F +M    E +     AY T ++      + ++A K L  ++   C P++  F
Sbjct: 166 LGEAEELFAQM--EAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSF 223

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           ++ L  L K      A+ L+++M     A P+S TYN+I + L    RV E  +   EM 
Sbjct: 224 NSILTCLGKKRKVDEALSLFEVMK--KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEME 281

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                P  L     +  L  A + E A +I+    + G  P   +   L+ GL   G++ 
Sbjct: 282 HASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVD 341

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERR-CK 459
           +  R  E+ML+       V    L + F+   R      +F  L RR CK
Sbjct: 342 EAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCK 391



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 147/345 (42%), Gaps = 7/345 (2%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK 162
           R   RG   S  ++N ++  LGK  + ++  +   VMK+D   +  T+  I D  C  G+
Sbjct: 210 RLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGR 269

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            +EA    D M    +  +++ VN ++  +C+          F +  ++  +PD  ++  
Sbjct: 270 VEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCS 329

Query: 223 LLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLIT-LIRGKQVDEALKFLRVM 280
           L++G  K+G V+EA + F +M++     NP   + Y + +    I G++ D    F  ++
Sbjct: 330 LIDGLGKKGQVDEAYRLFEKMLDAGHNANP---VVYTSLIRNFFIHGRKEDGHKVFKELI 386

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
           +   C P L   +  +D + K  +      +++ +  + G  PD  +Y+++   L K  +
Sbjct: 387 R-RGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSY-GFLPDVRSYSILIHGLTKAGQ 444

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
             E    FH M +  +          +     + +   A EI   + E  + P  A+   
Sbjct: 445 ARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGA 504

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           ++ GL  + RL +     EE  ++ I +  V    L   F    R
Sbjct: 505 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGR 549



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/377 (18%), Positives = 146/377 (38%), Gaps = 39/377 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDE 165
           RG       +  ++D LGK G+ ++ +     M + G  + P  + S+  ++   G+ ++
Sbjct: 318 RGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKED 377

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
               F  +   G + D+  +N+ +  + +        + F +       PD  S++IL+ 
Sbjct: 378 GHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIH 437

Query: 226 GWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           G  K G   E +  F  M ++ F  +     AY   +    +  +V +A + L  MK + 
Sbjct: 438 GLTKAGQARETSNIFHAMKQQGFALDAR---AYNAVVDGFCKSGKVHKAYEILEEMKEKC 494

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWD------------------------------- 313
             PT+  +   +D L K++    A  L++                               
Sbjct: 495 VQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAY 554

Query: 314 -IM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
            I+  M+  G  P+  T+N + + L+K + ++E    F  M + +  P     +  I  L
Sbjct: 555 LILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGL 614

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
               +   A   W  + + G++P   +   ++ GL  +G ++D     E       +   
Sbjct: 615 CRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDA 674

Query: 431 VTMHKLKKAFYNESRSM 447
            + + L +   N +R+M
Sbjct: 675 ASFNALIEGMSNANRAM 691



 Score = 44.7 bits (104), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 23/163 (14%)

Query: 96  SSAVDFFRWAGR------------GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           SS +D F   GR             + L+P  Y WN ++D L K     +     + MKE
Sbjct: 538 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKE 597

Query: 142 DGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
              +  P    T++ + +  C   KY++A + +  M   G+  +VV   +++S + +  N
Sbjct: 598 ---MKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGN 654

Query: 198 QTSRALEFLNRVKKIVD-PDGDSFAILLEGWEKEGNVEEANKT 239
            T  A     R K     PD  SF  L+EG        EA +T
Sbjct: 655 ITD-AYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQT 696


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 152/336 (45%), Gaps = 12/336 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L+ + + L++  L K GR       +  M   GV+ S+ T+ ++ D YC +G+  +A
Sbjct: 279 GCSLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDA 338

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLE 225
           +    +M  +G   D    NSL+  +C    +   A E LN  + +   P   +F  L+ 
Sbjct: 339 LGIKALMEQNGCNPDDWTYNSLIYGLC--GGKLDEAEELLNGAIARGFTPTVITFTNLIN 396

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVL-AYETFLITLIRGKQVDEALKFLRVMKGEN 284
           G+ K   +++A +    M+     N +  L AY   +  LI+  ++ EA + L  M    
Sbjct: 397 GYCKAERIDDALRVKSNMISS---NCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANG 453

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P +  +++ +D   K+     A++++  +M   G  P++ TY  +   LI++K++H+ 
Sbjct: 454 LAPNVVIYTSIIDGYCKVGMVGAALEVFK-LMEHEGCHPNAWTYGSLIYGLIQDKKLHKA 512

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
                +M ++   P  +   T I       E + A  ++  + +NG+ P E + N L   
Sbjct: 513 MALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDA 572

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           L   GR  +   F   ++ + +++ +VT   L   F
Sbjct: 573 LCKSGRAEEAYSF---LVRKGVVLTKVTYTSLVDGF 605



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 138/346 (39%), Gaps = 56/346 (16%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           A+N++ D L K+GR E+ ++ +  +++  VL+  T+ S+ D +  AG  D A +  + M 
Sbjct: 565 AYNVLTDALCKSGRAEEAYSFL--VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMV 622

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK------KIV--------------- 213
             G + D+   + LL A+C+Q+ + + AL  L+++        IV               
Sbjct: 623 NEGCKADLYTYSVLLQALCKQK-KLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKH 681

Query: 214 ---------------DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
                           P   ++ + +  + K G +EEA    GEM ER    P+ V+ Y 
Sbjct: 682 DHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEM-ERDGVTPD-VVTYH 739

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN-DSTHAVQ------- 310
            F+        +D A   L+ M   +C P    +   L   +K++  + H +        
Sbjct: 740 IFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNW 799

Query: 311 -----LWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
                +W ++  M+ HG  P  +TY+ I     K  R+ E       M+     P     
Sbjct: 800 IELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAISPNEEIY 859

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
              I    D       +     ++E G  P   S + L+VGL + G
Sbjct: 860 TMLIKCCCDIKLFGKDVSFVTDMIEFGFQPQLESYHYLIVGLCDEG 905



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 129/322 (40%), Gaps = 7/322 (2%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           R  G+   LSP  +NL +  L +    E M      + ++G+L    T+ ++  +YC  G
Sbjct: 134 RVGGKRLVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKG 193

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
               A   F ++   G++ D    N+LL   CR  +        +         +  S+ 
Sbjct: 194 SLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYT 253

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           IL++G  +   V EA      MV+  +    ++  Y   +  L +  ++ +A   L  M 
Sbjct: 254 ILIQGLYEARCVREALVLVFMMVQ--DGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEMP 311

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
                P++  ++  +D   K      A+ +   +M  +G  PD  TYN +   L   K +
Sbjct: 312 LRGVVPSVWTYNAMIDGYCKSGRMKDALGI-KALMEQNGCNPDDWTYNSLIYGLCGGK-L 369

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI-WNYILENGILPLEASANE 400
            E E+  +  I   + PT +     I     A+  + A+ +  N I  N  L L+A    
Sbjct: 370 DEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVL 429

Query: 401 LLVGLRNLGRLSDVRRFAEEML 422
           + V ++   RL + +    EM 
Sbjct: 430 INVLIKKC-RLKEAKETLNEMF 450


>gi|326522248|dbj|BAK07586.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 548

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 128/295 (43%), Gaps = 8/295 (2%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           +     G    D A+   D M   G+  DVV   ++LSA C +E+       F + +   
Sbjct: 211 LLKGLVGVRDLDAALKVLDEMPGWGIVPDVVTYTTVLSAYCAKEDLKGAQKLFDDIIAGG 270

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
             PD   + +L++G+ + G +++A +   EM E     P  V  Y   +    +  +  E
Sbjct: 271 RVPDVTMYTVLIDGYCRTGKIQDAARIMDEM-EAAGVQPNEV-TYSVVIEACCKEGKSAE 328

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A   +R M G    P     +  +D++ +   +  A Q+W   MV     PD+   N + 
Sbjct: 329 ACNLMREMLGAGHTPDTPLAAKVVDVMCQDGKAEEAHQMWR-WMVKKNVPPDNTITNTLI 387

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
             L K+  V E  K F E+ K  ++P+ L   + I+ L +  E + A ++W+ ++E    
Sbjct: 388 YWLCKSGMVREARKLFDELEKG-YKPSLLTYNSLISGLCENGELQEAGKVWDDMVERRYE 446

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKAFYNE 443
           P   +   L+ G   +G+  +      EM+ +      ++Y+V +  L +  +++
Sbjct: 447 PNAMTYEALIKGFCKIGKPDEGAAVFTEMVTKGCAPSKVLYQVLVDSLSEPIHDD 501



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 4/185 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++++++   K G+  +  N +R M   G     P  A + D  C  GK +EA   +  M 
Sbjct: 313 YSVVIEACCKEGKSAEACNLMREMLGAGHTPDTPLAAKVVDVMCQDGKAEEAHQMWRWMV 372

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
              V  D    N+L+  +C+       A +  + ++K   P   ++  L+ G  + G ++
Sbjct: 373 KKNVPPDNTITNTLIYWLCKS-GMVREARKLFDELEKGYKPSLLTYNSLISGLCENGELQ 431

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA K + +MVER  + P + + YE  +    +  + DE       M  + C P+   +  
Sbjct: 432 EAGKVWDDMVER-RYEP-NAMTYEALIKGFCKIGKPDEGAAVFTEMVTKGCAPSKVLYQV 489

Query: 295 ALDIL 299
            +D L
Sbjct: 490 LVDSL 494



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 9/215 (4%)

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN--PEHVLAYETFLITLIRG 267
           K  + PD  S  ILL+G     +++ A K   EM     W   P+ V+ Y T L      
Sbjct: 198 KLYITPDLVSCNILLKGLVGVRDLDAALKVLDEMPG---WGIVPD-VVTYTTVLSAYCAK 253

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           + +  A K    +      P +  ++  +D   +      A ++ D M    G  P+ +T
Sbjct: 254 EDLKGAQKLFDDIIAGGRVPDVTMYTVLIDGYCRTGKIQDAARIMDEMEA-AGVQPNEVT 312

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQP-TPLNCATAITMLLDADEPEIAIEIWNYI 386
           Y+++ E   K  +  E      EM+     P TPL       M  D    E A ++W ++
Sbjct: 313 YSVVIEACCKEGKSAEACNLMREMLGAGHTPDTPLAAKVVDVMCQDGKAEE-AHQMWRWM 371

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           ++  + P     N L+  L   G + + R+  +E+
Sbjct: 372 VKKNVPPDNTITNTLIYWLCKSGMVREARKLFDEL 406


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 149/352 (42%), Gaps = 44/352 (12%)

Query: 140 KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQENQ 198
           +E  V     F  +F +Y  A   ++AV  F  M      +Q V + NS+L+ I  QE  
Sbjct: 89  RERRVFLEKNFIVMFKAYGKAHLPEKAVDLFHRMWGEFQCKQTVKSFNSVLNVIV-QEGL 147

Query: 199 TSRALEFLNRV---KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
            +RALEF N V   K + + P+  +F ++++   + G V++A + F E+  R    P++ 
Sbjct: 148 FNRALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIEVFREIPLR-NCAPDNY 206

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
             Y T +  L + +++DEA+  L  M+ E  FP L  F+  +  L K  D   A +L D 
Sbjct: 207 -TYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDN 265

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI------- 367
           M +  G  P+ +TYN +   L    ++ +     ++M+ N+  P  +   T I       
Sbjct: 266 MFL-KGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQG 324

Query: 368 ----------------------------TMLLDADEPEIAIEIWNYILENGILPLEASAN 399
                                       + L    +   A+E+W  ++  G  P     +
Sbjct: 325 RASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYS 384

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIF 451
            L+ GL   G+L + R F  EM N+  L    T   L + ++    S + I 
Sbjct: 385 ALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAIL 436



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 157/361 (43%), Gaps = 30/361 (8%)

Query: 98  AVDFFRW--AGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----T 149
           A++F+    A +   + P A  +NL++  + + G  ++   A+ V +E  + +      T
Sbjct: 151 ALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDK---AIEVFREIPLRNCAPDNYT 207

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           ++++    C   + DEAV   D M + G   ++VA N L+SA+C++ +        L R 
Sbjct: 208 YSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGD--------LGRA 259

Query: 210 KKIVD--------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261
            K+VD        P+  ++  L+ G   +G +E+A     +MV   +  P  V  + T +
Sbjct: 260 AKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSN-KCVPNDV-TFGTLI 317

Query: 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA 321
              +   +  +  + L  ++          +S+ +  L K      A++LW   MV  G 
Sbjct: 318 NGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWK-EMVGKGC 376

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            P+++ Y+ + + L +  ++ E   F  EM    + P     ++ +    +A +   AI 
Sbjct: 377 GPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAIL 436

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
           +W  +  N  +  E   + L+ GL   G+  +     ++ML+R I +  V    +   F 
Sbjct: 437 VWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFC 496

Query: 442 N 442
           N
Sbjct: 497 N 497



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/231 (19%), Positives = 97/231 (41%), Gaps = 7/231 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            ++S+    C  GK+++A+  +  M   G   + +  ++L+  +CR E +   A  FL+ 
Sbjct: 347 VYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCR-EGKLDEARGFLSE 405

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K K   P+  +++ L+ G+ + G+  +A   + EM      + E  + Y   +  L + 
Sbjct: 406 MKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNE--VCYSILINGLCKD 463

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF--PDS 325
            +  EAL   + M        +  +S+ +      N     ++L++ M+   G    PD 
Sbjct: 464 GKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLC-QGPVVQPDV 522

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
           +TYN++       K +       + M+     P  + C   +  L +   P
Sbjct: 523 ITYNILLNAFCIQKSIFRAIDILNIMLDQGCDPDFITCDIFLKTLRENMNP 573



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 6/138 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++++++ L K+G+F +     + M   G+ L +  ++S+   +C A   ++ +  F+ M
Sbjct: 452 CYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQM 511

Query: 174 SMHG--VEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKE 230
              G  V+ DV+  N LL+A C Q++   RA++ LN  + +  DPD  +  I L+   + 
Sbjct: 512 LCQGPVVQPDVITYNILLNAFCIQKS-IFRAIDILNIMLDQGCDPDFITCDIFLKTLREN 570

Query: 231 GNVEEANKTF-GEMVERF 247
            N  +  + F  E+V R 
Sbjct: 571 MNPPQDGREFLDELVVRL 588


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 145/360 (40%), Gaps = 47/360 (13%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM--KEDGVLSLPTFASIFDSYC 158
           F R    G RLS  + N M+  L K GR   + +  + M  +  GV ++ TF  + +  C
Sbjct: 182 FDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGV-NVVTFDVVINGLC 240

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
             GK+ +A    + M   G    V+  N+++   C+              V K + P+  
Sbjct: 241 KVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEI 300

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +F IL++G+ ++ NV  A K F EM +R    P +V+ Y + +  L    ++DEAL    
Sbjct: 301 TFNILIDGFCRDENVTAAKKVFEEM-QRQGLQP-NVVTYNSLINGLCSNGKLDEALGLQD 358

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M G                                     G  P+ +TYN +     K 
Sbjct: 359 KMSG------------------------------------MGLKPNVVTYNALINGFCKK 382

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
           K + E  +   ++ K    P  +   T I     A   + A  + + +L+ G+ P  ++ 
Sbjct: 383 KMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTY 442

Query: 399 NELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
           N L+VG    G + + R+ A+EM    L   ++ Y + +  L K    E+R    + D +
Sbjct: 443 NCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKK--GETRKAVRLLDEM 500



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 135/327 (41%), Gaps = 7/327 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++++++ L K G+F++  + V  MK  G   S+ T+ +I D YC AGK  +A      M
Sbjct: 231 TFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEM 290

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               +  + +  N L+   CR EN T+    F    ++ + P+  ++  L+ G    G +
Sbjct: 291 VAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKL 350

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA     + +      P +V+ Y   +    + K + EA + L  +      P +  F+
Sbjct: 351 DEA-LGLQDKMSGMGLKP-NVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D   K      A  L   MM+  G  P+  TYN +     +   V E  K   EM  
Sbjct: 409 TLIDAYGKAGRMDDAFLLRS-MMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEG 467

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL---ENGILPLEASANELLVGLRNLGR 410
           N  +   +     +  L    E   A+ + + +    + G      + N L+ G  N G+
Sbjct: 468 NGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGK 527

Query: 411 LSDVRRFAEEMLNRRILIYEVTMHKLK 437
           L +  R   EML + ++    T   L+
Sbjct: 528 LEEANRLLNEMLEKGLIPNRTTYDILR 554



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 77/145 (53%), Gaps = 6/145 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +N ++D  GK GR +  +    +M + GV  ++ T+  +   +C  G   E
Sbjct: 398 RGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKE 457

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV----KKIVDPDGDSFA 221
           A      M  +G++ D+V  N L+ A+C++  +T +A+  L+ +    KK    +  ++ 
Sbjct: 458 ARKLAKEMEGNGLKADLVTYNILVDALCKK-GETRKAVRLLDEMTLMEKKGRRANIVTYN 516

Query: 222 ILLEGWEKEGNVEEANKTFGEMVER 246
           +L++G+  +G +EEAN+   EM+E+
Sbjct: 517 VLIKGFCNKGKLEEANRLLNEMLEK 541



 Score = 38.9 bits (89), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 44/233 (18%), Positives = 91/233 (39%), Gaps = 21/233 (9%)

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           + LEG+++ G+       +G  +     NP         L++L++  ++       + M 
Sbjct: 177 LALEGFDRAGD-------YGFRLSALSCNP--------MLVSLVKEGRIGVVESVYKEMI 221

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
                  +  F   ++ L K+     A  + + M  + G  P  +TYN I +   K  ++
Sbjct: 222 RRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAW-GFSPSVITYNTIIDGYCKAGKM 280

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            + +    EM+     P  +     I      +    A +++  +   G+ P   + N L
Sbjct: 281 FKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSL 340

Query: 402 LVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKL-KKAFYNESRSMRD 449
           + GL + G+L +     ++M    L   ++ Y   ++   KK    E+R M D
Sbjct: 341 INGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLD 393


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 143/330 (43%), Gaps = 7/330 (2%)

Query: 116 WNLMVDVLGKNGR-FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK-YDEAVMSFDVM 173
           +N++++V GK G  + ++ + V  MK DG+       +   + C  G  + EA   F+ M
Sbjct: 246 YNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEM 305

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G   D V  N+LL  +  + ++   A++ LN ++     P   ++  L+  + ++G 
Sbjct: 306 KAAGFSHDKVTYNALLD-VYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGM 364

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++EA +   +M E+       V  Y T L    R  +V+ A+     M+   C P +  F
Sbjct: 365 LDEAMELKNQMAEK--GTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTF 422

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  + +          ++++D + V  G  PD +T+N +     +N    EV   F EM 
Sbjct: 423 NAFIKMYGNRGKFVDMMKIFDEINVC-GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 481

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +  + P      T I+        E A+ ++  +L+ G+ P  ++ N +L  L   G   
Sbjct: 482 RAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWE 541

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
              +   EM + R    E+T   L  A+ N
Sbjct: 542 QSEKVLAEMEDGRCKPNELTYCSLLHAYAN 571



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 147/351 (41%), Gaps = 41/351 (11%)

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAV 167
           LSP    WN ++ V G+NG   ++    + MK  G V    TF ++  +Y   G +++A+
Sbjct: 450 LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM 509

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFL--NRVK------------- 210
             +  M   GV  D+   N++L+A+ R     Q+ + L  +   R K             
Sbjct: 510 TVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAY 569

Query: 211 ------------------KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
                              +++P       L+    K   + EA + F E+ ER  ++P+
Sbjct: 570 ANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKER-GFSPD 628

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            +    + +    R + V +A + L  MK     P++  +++ + +  +  D   + ++ 
Sbjct: 629 -ITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEIL 687

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
             ++   G  PD ++YN +     +N R+ +  + F EM  +   P  +   T I     
Sbjct: 688 REILA-KGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAA 746

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
               E AI +  Y++++G  P + + N ++ G   L R  + + F E++ N
Sbjct: 747 DSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRN 797



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 128/306 (41%), Gaps = 5/306 (1%)

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           +++ +LGK GR     N    ++EDG  L + ++ S+  ++  +G+Y EAV  F  M   
Sbjct: 178 IVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEE 237

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEE 235
           G +  ++  N +L+   +     ++    + ++K   + PD  ++  L+   ++    +E
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A + F EM  +        + Y   L    +  +  EA+K L  M+     P++  +++ 
Sbjct: 298 AAQVFEEM--KAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSL 355

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           +    +      A++L +  M   G  PD  TY  +     +  +V      F EM    
Sbjct: 356 ISAYARDGMLDEAMELKN-QMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAG 414

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
            +P        I M  +  +    ++I++ I   G+ P   + N LL      G  S+V 
Sbjct: 415 CKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVS 474

Query: 416 RFAEEM 421
              +EM
Sbjct: 475 GVFKEM 480



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 120/316 (37%), Gaps = 45/316 (14%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N ++    +    ++       MK  G      T+ ++ D Y  + +  EA+   + 
Sbjct: 280 YTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNE 339

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M ++G    +V  NSL+SA  R +     A+E  N++ +K   PD  ++  LL G+E+ G
Sbjct: 340 MELNGFSPSIVTYNSLISAYAR-DGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAG 398

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFL-ITLIRGKQVD------------------- 271
            VE A   F EM  R      ++  +  F+ +   RGK VD                   
Sbjct: 399 KVESAMNIFEEM--RNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVT 456

Query: 272 ---------------EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
                          E     + MK     P  + F+  +    +      A+ ++  M+
Sbjct: 457 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRML 516

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE- 375
              G  PD  TYN +   L +     + EK   EM     +P  L   + +    +  E 
Sbjct: 517 D-AGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEI 575

Query: 376 ---PEIAIEIWNYILE 388
                +A E+++ ++E
Sbjct: 576 GLMHSLAEEVYSGVIE 591



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 97/249 (38%), Gaps = 9/249 (3%)

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D    AI++    KEG V  A   F  + E  +     V +Y + +       +  EA+ 
Sbjct: 172 DNSVIAIVISMLGKEGRVSSAANLFNGLQE--DGFSLDVYSYTSLISAFANSGRYREAVN 229

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
             + M+ E C PTL  ++  L++  K+    + +      M   G  PD+ TYN +  C 
Sbjct: 230 VFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCC 289

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
            +     E  + F EM    +    +     + +   +  P+ A+++ N +  NG  P  
Sbjct: 290 KRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSI 349

Query: 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDIF 451
            + N L+      G L +      +M  +     +  Y   +   ++A   +  S  +IF
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERA--GKVESAMNIF 407

Query: 452 DSLERR-CK 459
           + +    CK
Sbjct: 408 EEMRNAGCK 416



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 121/299 (40%), Gaps = 9/299 (3%)

Query: 162 KYDEAVMSFDVMSMHGVEQDVV--AVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGD 218
           K+D A+ +FD        Q ++  +V +++ ++  +E + S A    N +++     D  
Sbjct: 150 KFDLALCAFDWFMKQKDYQSMLDNSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDVY 209

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQVDEALKFL 277
           S+  L+  +   G   EA   F +M E  E     ++ Y   L    + G   ++    +
Sbjct: 210 SYTSLISAFANSGRYREAVNVFKKMEE--EGCKPTLITYNVILNVFGKMGTPWNKITSLV 267

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             MK +   P    ++  +    + +    A Q+++ M    G   D +TYN + +   K
Sbjct: 268 EKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKA-AGFSHDKVTYNALLDVYGK 326

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
           + R  E  K  +EM  N + P+ +   + I+        + A+E+ N + E G  P   +
Sbjct: 327 SHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFT 386

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 454
              LL G    G++       EEM N        T +   K + N  +   M  IFD +
Sbjct: 387 YTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEI 445


>gi|50582688|gb|AAT78758.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|108709716|gb|ABF97511.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1025

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 130/300 (43%), Gaps = 4/300 (1%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           + +F  I DSYC  G   EA   +D M  HG   D+    SLL  +C Q     +A EF+
Sbjct: 455 VASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLC-QGGHLVQAKEFM 513

Query: 207 -NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              ++K    D  +   LL G  K G ++EA     +MV R    P+    Y   L    
Sbjct: 514 VYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTR-NILPD-TYTYTILLDGFC 571

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           +  +V  AL  L++M  +   P    ++  L+ LV       A  ++  ++   G + D 
Sbjct: 572 KRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADC 631

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           + YN +    +K  +++E+E+    M +NE  P+  +    +   +   +    + ++  
Sbjct: 632 IAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRD 691

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           +++ GI P   +   L+ GL   G +    +F E+M+   +    +    L KAF  +S+
Sbjct: 692 MVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSK 751



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 142/332 (42%), Gaps = 29/332 (8%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           N++++ L   G+  +  + ++ MK   + +  T+ +I + Y   G+   A+   D M  +
Sbjct: 234 NIVLNSLCTQGKLSKAESMLQKMKNCRLPNAVTYNTILNWYVKKGRCKSALRILDDMEKN 293

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
           G+E D+   N ++  +C+ + +++RA   L R++++ + PD  S+  L+ G+  EG +  
Sbjct: 294 GIEADLYTYNIMIDKLCKLK-RSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINL 352

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFL--------------------ITLIRGKQVDEALK 275
           A   F +M+ R    P  V  Y   +                    IT +R ++V +A +
Sbjct: 353 AIYIFNQML-RQSLKPS-VATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREVSKAKQ 410

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
            L+ M  +   P +  +S     L+       A Q    M     +F D  ++N I +  
Sbjct: 411 ILKCMLADGIDPDVITYSA----LINEGMIAEAEQFKQYMSRMKISF-DVASFNCIIDSY 465

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
            +   V E    +  M+++ W P      + +  L        A E   Y+LE      E
Sbjct: 466 CQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDE 525

Query: 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
            + N LLVG+   G L +     E+M+ R IL
Sbjct: 526 KTLNTLLVGICKHGTLDEALDLCEKMVTRNIL 557



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 153/339 (45%), Gaps = 21/339 (6%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF-D 171
           Y + +++D   K G+       +++M E G++     +  + +     G+   A   F +
Sbjct: 561 YTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQE 620

Query: 172 VMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
           ++   G+  D +A NS+++   +  Q N+  R +   N  +  V P   S+ IL+ G+ K
Sbjct: 621 IICKEGLYADCIAYNSMMNGYLKGGQINEIERLMR--NMHENEVYPSSASYNILMHGYIK 678

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +G +      + +MV+     P++V  Y   +  L     ++ A+KFL  M  E  FP  
Sbjct: 679 KGQLSRTLYLYRDMVKE-GIKPDNV-TYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPD- 735

Query: 290 KFFSNALDILVKL----NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
              + A DIL+K     +  ++A+QL+  M   H + P S TY  +   LI+   + +  
Sbjct: 736 ---NLAFDILIKAFSEKSKMSNALQLFSYMKWLHMS-PSSKTYVAMVNGLIRKNWLQQSY 791

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           +  H+M+++  QP   +    I       + + A E+   +   G++P E + + ++ GL
Sbjct: 792 EILHDMVESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGL 851

Query: 406 RNLGRLSD-VRRFAEEM---LNRRILIYEVTMHKLKKAF 440
              G++ + +  F+  M   +   I  +   MH L K F
Sbjct: 852 CKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEF 890



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/360 (19%), Positives = 147/360 (40%), Gaps = 24/360 (6%)

Query: 49  ISSSARIICEILAHASSDDI--ESALACTGIIPTPDLVHEVL---QLSYDSPSSAVDFFR 103
           +S + +I+  +LA     D+   SAL   G+I   +   + +   ++S+D  S       
Sbjct: 405 VSKAKQILKCMLADGIDPDVITYSALINEGMIAEAEQFKQYMSRMKISFDVASFNCIIDS 464

Query: 104 WAGRGQRLSPYA----------------WNLMVDVLGKNGRFEQMWN-AVRVMKEDGVLS 146
           +  RG  L  ++                +  ++  L + G   Q     V ++++   + 
Sbjct: 465 YCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAID 524

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
             T  ++    C  G  DEA+   + M    +  D      LL   C++       +   
Sbjct: 525 EKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQ 584

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
             ++K + PD  ++  LL G   EG V+ A+  F E++ + E      +AY + +   ++
Sbjct: 585 MMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICK-EGLYADCIAYNSMMNGYLK 643

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
           G Q++E  + +R M     +P+   ++  +   +K    +  + L+   MV  G  PD++
Sbjct: 644 GGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRD-MVKEGIKPDNV 702

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           TY ++   L +   +    KF  +M+     P  L     I    +  +   A+++++Y+
Sbjct: 703 TYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYM 762



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 78/386 (20%), Positives = 152/386 (39%), Gaps = 76/386 (19%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKE-------------------DGVL--------- 145
           Y +N+M+D L K  R  + +  ++ M+E                   +G +         
Sbjct: 300 YTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQ 359

Query: 146 --------SLPTFASIFDSYCGAGKYDE--------------------AVMSFDVMSMHG 177
                   S+ T+ ++ D YC  G+ DE                    A      M   G
Sbjct: 360 MLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREVSKAKQILKCMLADG 419

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           ++ DV+  ++L++     E +  +  ++++R+K  +  D  SF  +++ + + GNV EA 
Sbjct: 420 IDPDVITYSALINEGMIAEAEQFK--QYMSRMK--ISFDVASFNCIIDSYCQRGNVLEAF 475

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
             +  MV R  W P+ +  Y + L  L +G  + +A +F+  +  + C    K  +  L 
Sbjct: 476 SVYDNMV-RHGWPPD-ICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLV 533

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
            + K      A+ L +  MV     PD+ TY ++ +   K  +V         M++    
Sbjct: 534 GICKHGTLDEALDLCE-KMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLV 592

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNY-----ILENGILPLEASANELLVGLRNLGRLS 412
           P  +    A T LL+    E  ++  +Y     I + G+     + N ++ G    G+++
Sbjct: 593 PDTI----AYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQIN 648

Query: 413 DVRRFAEEMLNRRIL----IYEVTMH 434
           ++ R    M    +      Y + MH
Sbjct: 649 EIERLMRNMHENEVYPSSASYNILMH 674


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 161/365 (44%), Gaps = 20/365 (5%)

Query: 82  DLVHEVL--QLSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           DL+ EV   Q   D    A+D F   A +G   S    N+++  L +   F++   A  V
Sbjct: 184 DLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAFHV 243

Query: 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           + +     +  F +  +++C  GK +EA+  F  M   GV  +VV  N+++  +     +
Sbjct: 244 VCKGVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGL-GMSGR 302

Query: 199 TSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
              A  F  + V++ V+P   +++IL++G  K   + +A     EM E+    P +V+ Y
Sbjct: 303 YDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEK--GFPPNVIVY 360

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM- 316
              + +LI    +++A++   +M  +    T   ++  +    K   +  A +L   M+ 
Sbjct: 361 NNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLS 420

Query: 317 ----VFHGAFPDSLTYNMIFECLIKNKRVHEVE-KFFHEMIKNEWQPTPLNCATAITMLL 371
               V  G+F   +       CL+ +  + +   +F  EM+     P      T I+ L 
Sbjct: 421 IGFNVNQGSFTSVI-------CLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLC 473

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 431
              +   A+E+W   L  G L    ++N LL GL   G+L +  R  +E+L R  ++  V
Sbjct: 474 KHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRV 533

Query: 432 TMHKL 436
           + + L
Sbjct: 534 SYNTL 538



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/368 (20%), Positives = 151/368 (41%), Gaps = 41/368 (11%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++D LG +GR+++ +     M E GV  +L T++ +      A +  +A      M
Sbjct: 289 TYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEM 348

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGN 232
           +  G   +V+  N+L+ ++  +    ++A+E  +  V K +     ++  L++G+ K G 
Sbjct: 349 TEKGFPPNVIVYNNLIDSLI-EAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQ 407

Query: 233 VEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            + A +   EM+   F  N     ++ + +  L      D AL+F+  M   N  P    
Sbjct: 408 ADIAERLLKEMLSIGFNVNQG---SFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGL 464

Query: 292 FSNALDILVKLNDSTHAVQLWDIMM-------------VFHGAFP--------------- 323
            +  +  L K    + AV+LW   +             + HG                  
Sbjct: 465 LTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEIL 524

Query: 324 ------DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
                 D ++YN +      NK++ E   F  EM+K   +P     +  I  LL+ ++ E
Sbjct: 525 GRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVE 584

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437
            AI+ W     NG++P   + + ++ G     R  + ++  +EM++  +    V  + L 
Sbjct: 585 EAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLI 644

Query: 438 KAFYNESR 445
            A+    R
Sbjct: 645 GAYCRSGR 652



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 105/236 (44%), Gaps = 7/236 (2%)

Query: 124 GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           GK+ +  ++W  ++ + +  ++   T  ++    C AGK +E       +   G   D V
Sbjct: 476 GKHSKAVELW--LKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRV 533

Query: 184 AVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
           + N+L+S  C  + +   A  F++  VKK + PD  +++IL+ G      VEEA + +G+
Sbjct: 534 SYNTLISGCCGNK-KLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGD 592

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
             +R    P+ V  Y   +    + ++ +E  K    M   N  P    +++ +    + 
Sbjct: 593 -CKRNGMIPD-VYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRS 650

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
              + A++L + M    G  P+S TY  + + +    RV E +    EM     +P
Sbjct: 651 GRLSMALELREDMK-HKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEP 705



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 133/328 (40%), Gaps = 53/328 (16%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP------TFASIFDSYCGA 160
           +G  L+   +N ++    K+G   Q   A R++KE  +LS+       +F S+    C  
Sbjct: 386 KGLSLTSSTYNTLIKGYCKSG---QADIAERLLKE--MLSIGFNVNQGSFTSVICLLCSH 440

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKIVDPDGDS 219
             +D A+     M +  +      + +L+S +C+   + S+A+E  L  + K    D  +
Sbjct: 441 HMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKH-GKHSKAVELWLKFLNKGFLVDTKT 499

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
              LL G  + G +EE  +   E++ R F  +    ++Y T +      K++DEA  F+ 
Sbjct: 500 SNALLHGLCEAGKLEEGFRIQKEILGRGFVMDR---VSYNTLISGCCGNKKLDEAFMFM- 555

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
                             D +VK                  G  PD+ TY+++   L+  
Sbjct: 556 ------------------DEMVK-----------------KGLKPDNYTYSILIRGLLNM 580

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
            +V E  +F+ +  +N   P     +  I     A+  E   ++++ ++ N + P     
Sbjct: 581 NKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVY 640

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           N L+      GRLS      E+M ++ I
Sbjct: 641 NHLIGAYCRSGRLSMALELREDMKHKGI 668



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 82/397 (20%), Positives = 153/397 (38%), Gaps = 67/397 (16%)

Query: 50  SSSARIICEILAHASSDDIESALACTG------IIPTPDLVHEVLQ--LSYDSPSSAVDF 101
            S   +IC + +H   D   SAL   G      + P   L+  ++     +   S AV+ 
Sbjct: 428 GSFTSVICLLCSHHMFD---SALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVEL 484

Query: 102 -FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR-VMKEDGVLSLPTFASIFDSYCG 159
             ++  +G  +     N ++  L + G+ E+ +   + ++    V+   ++ ++    CG
Sbjct: 485 WLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCG 544

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGD 218
             K DEA M  D M   G++ D    + L+  +    N+   A++F    K+  + PD  
Sbjct: 545 NKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNM-NKVEEAIQFWGDCKRNGMIPDVY 603

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL------AY--------------- 257
           +++++++G  K    EE  K F EM+      P  V+      AY               
Sbjct: 604 TYSVMIDGCCKAERTEEGQKLFDEMMSN-NLQPNTVVYNHLIGAYCRSGRLSMALELRED 662

Query: 258 ---------ETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
                         +LI+G     +V+EA   L  M+ E   P +  ++  +D   KL  
Sbjct: 663 MKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLG- 721

Query: 305 STHAVQLWDIMMVFHG--AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP-- 360
               V++  ++   H     P+ +TY ++     ++  V E  +  HEM +    P    
Sbjct: 722 --QMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSIT 779

Query: 361 --------LNCATAITMLLDADEPEIA--IEIWNYIL 387
                   L     +     +DE   A  IE WN ++
Sbjct: 780 YKEFIYGYLKQGGVLQAFKGSDEENYAAIIEGWNKLI 816



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 5/124 (4%)

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
           G FP   T N++   L++     +  + FH + K    P      TAI       + E A
Sbjct: 213 GMFPSKTTCNILLTSLVRATEFQKCCEAFHVVCKG-VSPDVYLFTTAINAFCKGGKVEEA 271

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHK 435
           IE+++ + E G++P   + N ++ GL   GR  +   F E+M+ R +    + Y + +  
Sbjct: 272 IELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKG 331

Query: 436 LKKA 439
           L KA
Sbjct: 332 LTKA 335



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 80/188 (42%), Gaps = 4/188 (2%)

Query: 260 FLITLIRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
            L +L+R  +  +  + F  V KG +  P +  F+ A++   K      A++L+   M  
Sbjct: 224 LLTSLVRATEFQKCCEAFHVVCKGVS--PDVYLFTTAINAFCKGGKVEEAIELFS-KMEE 280

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            G  P+ +TYN + + L  + R  E   F  +M++   +PT +  +  +  L  A     
Sbjct: 281 AGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGD 340

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
           A  +   + E G  P     N L+  L   G L+      + M+++ + +   T + L K
Sbjct: 341 AYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIK 400

Query: 439 AFYNESRS 446
            +    ++
Sbjct: 401 GYCKSGQA 408


>gi|115436834|ref|NP_001043148.1| Os01g0506100 [Oryza sativa Japonica Group]
 gi|56201661|dbj|BAD73125.1| leaf protein -like [Oryza sativa Japonica Group]
 gi|113532679|dbj|BAF05062.1| Os01g0506100 [Oryza sativa Japonica Group]
 gi|215717162|dbj|BAG95525.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 541

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 166/435 (38%), Gaps = 62/435 (14%)

Query: 51  SSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFF-RWAGRGQ 109
           S+A     +L+    +D  ++L   GI P P +  ++       P SA+    RWAG   
Sbjct: 17  SAAAAASTVLSILRGED-PASLPAAGIDPCPAVFQQLRPSLPTVPDSALPALARWAGEAT 75

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169
                     V +L   G F   W  + +        L  FA +   Y   G+   A+ +
Sbjct: 76  ---------AVSLLTSRGLFAAAWRLL-LAPSPTPPPLAAFAPLVRRYARLGRAPAALRA 125

Query: 170 FDVMSMHG----VEQDVVAVNSLLS----AICRQENQTSRALEFLNRVKK---IVDPDGD 218
           F  +  H        D+ A  SLL+    A+C+ E     A+E   R ++      PD  
Sbjct: 126 FQFLRRHPDRYMAGGDIPAAASLLNMAVDALCK-EGHPRAAVELFERWRREEPDSPPDER 184

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ ILL GW + G +++  K + EM  R       V+ Y T +  L   ++ D+A+  L 
Sbjct: 185 AYNILLHGWSRAGRLDKVGKLWAEM--RLAGVRPTVVTYGTLIEGLCVKRRPDQAIALLD 242

Query: 279 VMKGEN-------CFPTL------KFFSNALDILVKL----------------------N 303
            M+ E        C P +        F +A  +L K                        
Sbjct: 243 EMREEGIEANLLTCNPIVYALAQAGRFQDAHKVLEKFPLYGVAPNISTFNSLVMGYCKHG 302

Query: 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
           D   A  +  +M    G  P + TYN  F    KN  V     F+ +MI N + P  L  
Sbjct: 303 DLAGASSVLKVM-TERGISPTTRTYNYFFMTFAKNSDVESGMNFYSKMIGNGYSPDQLTY 361

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
              + ML  A+  E+ +++   +  +G  P  A++  L+  L    +  +     E+M  
Sbjct: 362 VLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCRRHQFEEACAEFEDMFK 421

Query: 424 RRILIYEVTMHKLKK 438
           R I+   +T  KL +
Sbjct: 422 RGIVPQYITYQKLMR 436



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 139/333 (41%), Gaps = 46/333 (13%)

Query: 95  PSSAVDFF-RWAGRGQRLSP---YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           P +AV+ F RW  R +  SP    A+N+++    + GR +++      M+  GV  ++ T
Sbjct: 162 PRAAVELFERWR-REEPDSPPDERAYNILLHGWSRAGRLDKVGKLWAEMRLAGVRPTVVT 220

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + ++ +  C   + D+A+   D M   G+E +++  N ++ A+  Q  +   A + L + 
Sbjct: 221 YGTLIEGLCVKRRPDQAIALLDEMREEGIEANLLTCNPIVYALA-QAGRFQDAHKVLEKF 279

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
               V P+  +F  L+ G+ K G++  A+     M ER   +P     Y  F +T  +  
Sbjct: 280 PLYGVAPNISTFNSLVMGYCKHGDLAGASSVLKVMTER-GISPT-TRTYNYFFMTFAKNS 337

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            V+  + F   M G                                    +G  PD LTY
Sbjct: 338 DVESGMNFYSKMIG------------------------------------NGYSPDQLTY 361

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
            ++ + L +  R+  V +   EM  + ++P        I +L    + E A   +  + +
Sbjct: 362 VLLVKMLSRANRLELVVQMIQEMRTHGFEPDLATSTMLIHLLCRRHQFEEACAEFEDMFK 421

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            GI+P   +  +L+  L+ LG +  +++    M
Sbjct: 422 RGIVPQYITYQKLMRELKRLGLVHLIQKLTNLM 454


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 131/300 (43%), Gaps = 43/300 (14%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           AWN+++    K GR  + +  +  +   G + +  T+ ++ D +C +G   EA+  F V+
Sbjct: 177 AWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVL 236

Query: 174 SM--HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKE 230
           S   H  E +VV  N+L+S +C+  ++   A E + ++K + +  D  ++  L++G  K+
Sbjct: 237 SSRDHHAEPNVVTFNALISGLCKA-DRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQ 295

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G   E ++ F EM+ R   NP  V+ Y T +    +   + +A + +R            
Sbjct: 296 GRTSEVSRVFEEML-REGCNPS-VVTYTTLVHAHCKAGSLQDAQQVIR------------ 341

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
                                    MV  G  PD  TY ++ E L +N +V    +FF +
Sbjct: 342 ------------------------SMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEK 377

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           +++    P  +  +  +     A   + A++ +  +L+  + P  A+   L+  L   GR
Sbjct: 378 ILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGR 437



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 125/298 (41%), Gaps = 12/298 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ +I   YC   + D+A    +  S      DV+A+ S+    C+ +         L+ 
Sbjct: 108 TYTAIIKCYCKMDRLDQARQLLEESSC--CSSDVIAITSVARGFCKAQRVDEAYQLLLDM 165

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           V KK   PD  ++ +++ G+ K G V EA +    +V      P  V  Y T +    + 
Sbjct: 166 VEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVS-MGCVPNAV-TYTTLIDGFCKS 223

Query: 268 KQVDEALKFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
             + EAL+  +V+  +  +  P +  F+  +  L K +   HA +L   M        D+
Sbjct: 224 GNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKA-RDLRADT 282

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
            TY  + + L K  R  EV + F EM++    P+ +   T +     A   + A ++   
Sbjct: 283 FTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRS 342

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKA 439
           ++  GI P   +   LL GL   G++     F E++L  R     ++Y   +    KA
Sbjct: 343 MVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKA 400



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/335 (19%), Positives = 141/335 (42%), Gaps = 11/335 (3%)

Query: 98  AVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA--SI 153
           A++ F    +   L P A  +  ++    K  R +Q   A ++++E    S    A  S+
Sbjct: 89  ALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQ---ARQLLEESSCCSSDVIAITSV 145

Query: 154 FDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
              +C A + DEA  +  D++     + D+VA N ++   C+   +   A E L  +  +
Sbjct: 146 ARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKA-GRVREAYEMLETLVSM 204

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
              P+  ++  L++G+ K GN+ EA + F  +  R      +V+ +   +  L +  +++
Sbjct: 205 GCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLE 264

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
            A + ++ MK  +       ++  +D L K   ++   ++++ M+   G  P  +TY  +
Sbjct: 265 HAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEML-REGCNPSVVTYTTL 323

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
                K   + + ++    M+     P        +  L +  +   A E +  IL    
Sbjct: 324 VHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERC 383

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            P     + L+ G      + +  ++  EML+RR+
Sbjct: 384 PPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRL 418



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 133/334 (39%), Gaps = 51/334 (15%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+ +    C AG+  EAV  ++ M       ++  +N LL+++C Q     +A+     
Sbjct: 5   TFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLC-QAGTMDQAMAIFRG 63

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           ++    P   +  IL+ G+ +   +++A + F EM + F   PE    Y   +    +  
Sbjct: 64  IQ--CSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEAT-TYTAIIKCYCKMD 120

Query: 269 QVDEALKFLR--------------VMKGENCFPTLKFFSNALDILVKLNDSTHA---VQL 311
           ++D+A + L               V +G   F   +    A  +L+ + +   A   +  
Sbjct: 121 RLDQARQLLEESSCCSSDVIAITSVARG---FCKAQRVDEAYQLLLDMVEKKSAKPDIVA 177

Query: 312 WDIM-------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           W+++                   +V  G  P+++TY  + +   K+  + E  + F  + 
Sbjct: 178 WNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLS 237

Query: 353 KNEWQPTPLNCAT---AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
             +    P N  T    I+ L  AD  E A E+   +    +     +   L+ GL   G
Sbjct: 238 SRDHHAEP-NVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQG 296

Query: 410 RLSDVRRFAEEML----NRRILIYEVTMHKLKKA 439
           R S+V R  EEML    N  ++ Y   +H   KA
Sbjct: 297 RTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKA 330


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 141/327 (43%), Gaps = 9/327 (2%)

Query: 72  LACTGIIPTPDLVHEVLQLSYDSPSSAVDFFR----WAGRGQRLSPYAWNLMVDVLGKNG 127
           + C G++P   +++ ++   +       D  R      G G       +N +++ L K  
Sbjct: 7   MRCFGLVPDG-VIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 65

Query: 128 RFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           R       +  M+E GV   L TF ++   YC  GK D+A+  FD M    +  D+V  N
Sbjct: 66  RLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYN 125

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           +L+  +CRQ +       + +   + + P+  +++IL++   ++G VE+A     EM+ +
Sbjct: 126 TLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINK 185

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
                 +++ Y + +    R   V +  KFL+ M      P L  ++  +   +K +   
Sbjct: 186 GIL--PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMH 243

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            A +L + MM      PD +TYNM+      +  V E    F +M     +P      + 
Sbjct: 244 DAFKLLN-MMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSM 302

Query: 367 ITMLLDADEPEIAIEIWNYILENGILP 393
           I   + A   + A ++ + +L+ G  P
Sbjct: 303 INGHVTAGNSKEAFQLHDEMLQRGFAP 329



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 129/286 (45%), Gaps = 9/286 (3%)

Query: 142 DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           DGV+    +  +   +C AG   +A+   D M   G   DVV  N+LL+ +C+ E +   
Sbjct: 15  DGVI----YTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK-ERRLLD 69

Query: 202 ALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           A   LN ++ + V PD  +F  L+ G+  EG +++A + F  M+ +    P+ ++ Y T 
Sbjct: 70  AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ-RLRPD-IVTYNTL 127

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +  + R   +D+A      M     FP    +S  +D   +      A    D  M+  G
Sbjct: 128 IDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLD-EMINKG 186

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             P+ +TYN I +   ++  V + +KF  +M+ N+  P  +   T I   +  D+   A 
Sbjct: 187 ILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAF 246

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           ++ N + +  + P   + N L+ G    G + +     E+M  + I
Sbjct: 247 KLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGI 292



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 107/240 (44%), Gaps = 4/240 (1%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PDG  + +++ G+ + G + +A +   EMV      P+ V+ Y T L  L + +++ +A 
Sbjct: 14  PDGVIYTMVIGGFCRAGLMSDALRVRDEMVG-CGCLPD-VVTYNTLLNGLCKERRLLDAE 71

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
             L  M+     P L  F+  +           A+QL+D M+      PD +TYN + + 
Sbjct: 72  GLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLN-QRLRPDIVTYNTLIDG 130

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           + +   + +    + +M   E  P  +  +  I    +  + E A    + ++  GILP 
Sbjct: 131 MCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPN 190

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
             + N ++ G    G +S  ++F ++M+  ++    +T + L   +  E + M D F  L
Sbjct: 191 IMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDK-MHDAFKLL 249



 Score = 45.4 bits (106), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 2/182 (1%)

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
           + +LR M+     P    ++  +    +    + A+++ D  MV  G  PD +TYN +  
Sbjct: 1   MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRD-EMVGCGCLPDVVTYNTLLN 59

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L K +R+ + E   +EM +    P      T I       + + A+++++ +L   + P
Sbjct: 60  GLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRP 119

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDS 453
              + N L+ G+   G L       ++M +R I    VT   L  + + E   + D F  
Sbjct: 120 DIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS-HCEKGQVEDAFGF 178

Query: 454 LE 455
           L+
Sbjct: 179 LD 180


>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 156/363 (42%), Gaps = 12/363 (3%)

Query: 104 WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           ++G+G +   Y +N +++   K+  F  +   ++VMK+DGV+ +  T+  + +     GK
Sbjct: 231 FSGKGIKPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGK 290

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            ++    FD M   G+E D+    SL+S  CR+ N     L F    +K + P   ++  
Sbjct: 291 MNDVEKLFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGA 350

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  K G +  A     EM  +   N   V+ + T +    R   +DEA     VM+ 
Sbjct: 351 LIDGVCKVGEMGAAEILMNEMQSK-GVNITQVV-FNTLINGYCRKGMIDEASMIYDVMEK 408

Query: 283 ENCFPTLKFFSNAL-DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
           +  F    F  N +     +L     A Q W   M+  G    +++Y  + +   K   V
Sbjct: 409 KG-FQADVFTCNTIASCFNRLKRYDEAKQ-WLFRMMEGGVRLSTVSYTNLIDVYCKEGNV 466

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E ++ F EM   E QP  +     I       + + A ++W  +  NG+ P   +   L
Sbjct: 467 EEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSL 526

Query: 402 LVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 457
           + G      + +  R   EM    L++  + Y V +  L KA   +S     ++D ++R+
Sbjct: 527 IHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKA--GKSDEAFGLYDEIKRK 584

Query: 458 CKT 460
             T
Sbjct: 585 GYT 587



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 1/144 (0%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
            FR    G RLS  ++  ++DV  K G  E+       M    V  +  T+  +  +YC 
Sbjct: 438 LFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCK 497

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            GK  EA   +  M  +G++ D     SL+   C  +N       F     K +D +  +
Sbjct: 498 QGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVT 557

Query: 220 FAILLEGWEKEGNVEEANKTFGEM 243
           + +++ G  K G  +EA   + E+
Sbjct: 558 YTVMISGLSKAGKSDEAFGLYDEI 581


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 137/314 (43%), Gaps = 4/314 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A N+++D L K GRF+ MW     M   G   ++ T+ ++ D  C  G + +A   FD M
Sbjct: 160 ACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEM 219

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               +   VV    L+  +C +   +     F       + P+  ++  +++G+ K  +V
Sbjct: 220 IEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHV 279

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A + + EM+   +    +V+ +   +  L +  ++  A KFL  M      P +  ++
Sbjct: 280 KKALELYXEMLG--DGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYN 337

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D   K  + + A+ L    +  H   PD  TY+++ + L    R+ E +    EM K
Sbjct: 338 CLIDGYCKAGNLSEALSLHS-EIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKK 396

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
             + P  +   T I         E AIE+ + + E GI P   + + L+ G    G++  
Sbjct: 397 KGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEA 456

Query: 414 VRRFAEEMLNRRIL 427
                 EM+ + +L
Sbjct: 457 AMGLYTEMVIKGLL 470



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 127/308 (41%), Gaps = 26/308 (8%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +++++  L    R E+    ++ MK+ G L +  T+ ++ D YC  G  ++A+     
Sbjct: 369 FTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQ 428

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M+  G+E +++  ++L+   C+     +    +   V K + PD  ++  L++G  K+GN
Sbjct: 429 MTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGN 488

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +EA +   EM E    +P +V      +  L +  ++ +A+K      G +   T    
Sbjct: 489 TKEAFRLHKEMQEA-GLHP-NVFTLSCLIDGLCKDGRISDAIKLFLAKTGTD---TTGSK 543

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +N LD  +                      P+ + Y  + + L  + R+ +  KFF +M 
Sbjct: 544 TNELDRSL--------------------CSPNHVMYTALIQGLCTDGRIFKASKFFSDMR 583

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
            +  +P    C   I     A      + +   IL+ GI+P  +    L  G    G L 
Sbjct: 584 CSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLK 643

Query: 413 DVRRFAEE 420
               F  E
Sbjct: 644 SALSFCGE 651



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 121/318 (38%), Gaps = 7/318 (2%)

Query: 110 RLSPYAWNLMVDVLGKNGRFEQ-MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           + +P  + +++    + G  E+ +W      K D + ++     + D     G++D    
Sbjct: 123 KFTPNVFGVLIIAFSEMGLVEEALW---VYYKMDVLPAMQACNMVLDGLVKKGRFDTMWK 179

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            +  M   G   +VV   +L+   CRQ +       F   ++K + P    + IL+ G  
Sbjct: 180 VYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLC 239

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
            E  + EA   F  M  R      ++  Y T +    +   V +AL+    M G+   P 
Sbjct: 240 GESRISEAESMFRTM--RNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPN 297

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  F   +D L K ++   A +    M  F G  P+   YN + +   K   + E     
Sbjct: 298 VVTFGILIDGLCKTDEMVSARKFLIDMASF-GVVPNIFVYNCLIDGYCKAGNLSEALSLH 356

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            E+ K+E  P     +  I  L   D  E A  +   + + G LP   + N L+ G    
Sbjct: 357 SEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKE 416

Query: 409 GRLSDVRRFAEEMLNRRI 426
           G +        +M  + I
Sbjct: 417 GNMEKAIEVCSQMTEKGI 434



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 71/342 (20%), Positives = 141/342 (41%), Gaps = 11/342 (3%)

Query: 108 GQRLSPYAWNLMVDV---LGKNGRFEQMWNAVRVMK--EDGVLSLPTFASIFDSYCGAGK 162
           G +L   A  LM D+   L K+ R     +   V+   E    +   F  +  ++   G 
Sbjct: 82  GAKLYAKARCLMRDLIQCLQKSRRSRICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGL 141

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            +EA+  +  M +    Q   A N +L  + ++    +    + + V +   P+  ++  
Sbjct: 142 VEEALWVYYKMDVLPAMQ---ACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGT 198

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  ++G+  +A + F EM+E+  +    V+ Y   +  L    ++ EA    R M+ 
Sbjct: 199 LIDGCCRQGDFLKAFRLFDEMIEKKIFPT--VVIYTILIRGLCGESRISEAESMFRTMRN 256

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
               P L  ++  +D   K+     A++L+   M+  G  P+ +T+ ++ + L K   + 
Sbjct: 257 SGMLPNLYTYNTMMDGYCKIAHVKKALELY-XEMLGDGLLPNVVTFGILIDGLCKTDEMV 315

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
              KF  +M      P        I     A     A+ + + I ++ ILP   + + L+
Sbjct: 316 SARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILI 375

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            GL  + R+ +     +EM  +  L   VT + L   +  E 
Sbjct: 376 KGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEG 417


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 150/357 (42%), Gaps = 53/357 (14%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R + Y + + + VLG++G+ ++ +  ++ M +DG    + T+  + D+ C A K D+A
Sbjct: 259 GLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDA 318

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--------VDPDGD 218
           +  F  M     + D V   +LL       +        L++V+KI          PD  
Sbjct: 319 MCLFTKMKSSSHKPDKVTYVTLLDKFSDCGH--------LDKVEKIWTEMEADGYAPDVV 370

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +F IL+    K G + EA      M  R +    ++  Y T +  L+R  ++D+AL    
Sbjct: 371 TFTILVNALCKAGRINEAFDLLDTM--RKQGVLPNLHTYNTLISGLLRANRLDDALDLFS 428

Query: 279 VMKGENCFPTLKFFSNALDI-------------------------LVKLNDSTHAV---- 309
            M+     PT   +   +D                          +V  N S +++    
Sbjct: 429 NMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMG 488

Query: 310 QLWDIMMVFH-----GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
           +L +   +F+     G  PDS+TYNM+ +C  K  +V E  K   EM K + +P  +   
Sbjct: 489 RLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVIN 548

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           + I  L  A   E A +++  + E  + P   + N LL GL   G++    +  E M
Sbjct: 549 SLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESM 605



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/377 (20%), Positives = 154/377 (40%), Gaps = 71/377 (18%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N ++D L K GR E+ W     M+E  +  ++ T+  +       G+  +AV  F+ M+ 
Sbjct: 548 NSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNG 607

Query: 176 HGVEQDVVAVNSLLSAICR----------------------------------QENQTSR 201
           HG   + +  N+LL  +C+                                  ++NQ   
Sbjct: 608 HGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKN 667

Query: 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT-------FGEMVERFEW----- 249
           A+   +++KK++ PD  +   LL G  K G +E+A +         G  ++R  W     
Sbjct: 668 AIWLFHQMKKLLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMG 727

Query: 250 ------NPEHVLAYETFLI----------------TLIRGKQVDEALK-FLRVMKGENCF 286
                   E  + +   L+                 L + K+   A   F++  K     
Sbjct: 728 GILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVK 787

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           PTLK ++  +D  +++++   A  L++ M    G  PD+ TYN + +   K+ +++E+  
Sbjct: 788 PTLKVYNLLIDGFLEVHNVEVAWNLFEEMKS-AGCAPDTFTYNSLIDAHGKSGKINELFD 846

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            + EM+    +P  +     I+ L+ ++  + A++++  ++     P   +   L+ GL 
Sbjct: 847 LYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLL 906

Query: 407 NLGRLSDVRRFAEEMLN 423
             GRL D     + M++
Sbjct: 907 KSGRLDDAHEMFDGMVH 923



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 123/277 (44%), Gaps = 9/277 (3%)

Query: 128 RFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           + E++W     M+ DG    + TF  + ++ C AG+ +EA    D M   GV  ++   N
Sbjct: 352 KVEKIWTE---MEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYN 408

Query: 187 SLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245
           +L+S + R  N+   AL+  + ++ + V+P   ++ +L++   K G+  +A +TF +M  
Sbjct: 409 TLISGLLRA-NRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKA 467

Query: 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
           R      +++A    L +L    ++ EA      +K     P    ++  +    K+   
Sbjct: 468 R--GIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQV 525

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
             A++L   M       PD +  N + + L K  RV E  + F  M +    PT +    
Sbjct: 526 DEAIKLLSEMSKVQ-CEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNI 584

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
            +  L    + + A++++  +  +G  P   + N LL
Sbjct: 585 LLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLL 621



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 126/309 (40%), Gaps = 41/309 (13%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
             +NL++D   +    E  WN    MK  G      T+ S+ D++  +GK +E    +D M
Sbjct: 792  VYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEM 851

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGN 232
               G + + +  N ++S + +  N+  +A++ + N V     P   +F  L++G  K G 
Sbjct: 852  LTRGCKPNTITYNMVISNLVKS-NRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGR 910

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +++A++ F  MV  +   P   + Y   +    +   VD A +F +              
Sbjct: 911  LDDAHEMFDGMVH-YGCRPNSAI-YNILVNGYGKLGHVDTACEFFK-------------- 954

Query: 293  SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
                                   MV  G  PD  +Y ++ + L    RV +   +F ++ 
Sbjct: 955  ----------------------RMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLK 992

Query: 353  KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
            +    P  +     I  L  +   E A+ +++ +   GI+P   + N L++ L  +G + 
Sbjct: 993  QAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIE 1052

Query: 413  DVRRFAEEM 421
            +  +  EE+
Sbjct: 1053 EAGKIYEEL 1061



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 3/232 (1%)

Query: 196 ENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
           E  T +A+ F  R V + +  D      +++   K      A   F +  +     P  +
Sbjct: 732 EAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPT-L 790

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
             Y   +   +    V+ A      MK   C P    +++ +D   K         L+D 
Sbjct: 791 KVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDE 850

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
           M+   G  P+++TYNM+   L+K+ R+ +    ++ ++  ++ PTP      I  LL + 
Sbjct: 851 MLT-RGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSG 909

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
             + A E+++ ++  G  P  A  N L+ G   LG +     F + M+   I
Sbjct: 910 RLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGI 961



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 123/295 (41%), Gaps = 45/295 (15%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            + +N ++D  GK+G+  ++++                            YDE       M
Sbjct: 826  FTYNSLIDAHGKSGKINELFDL---------------------------YDE-------M 851

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGN 232
               G + + +  N ++S + +  N+  +A++ + N V     P   +F  L++G  K G 
Sbjct: 852  LTRGCKPNTITYNMVISNLVKS-NRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGR 910

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +++A++ F  MV  +   P   + Y   +    +   VD A +F + M  E   P LK +
Sbjct: 911  LDDAHEMFDGMVH-YGCRPNSAI-YNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSY 968

Query: 293  SNALDILV---KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
            +  +DIL    +++D+ H  +     +   G  PD + YN++   L +++R  E    FH
Sbjct: 969  TILVDILCIAGRVDDALHYFE----KLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFH 1024

Query: 350  EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            EM      P      + I  L      E A +I+  +   G+ P   + N L+ G
Sbjct: 1025 EMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRG 1079



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 144/347 (41%), Gaps = 10/347 (2%)

Query: 97  SAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           SA++  R AG    L+ Y++N ++  L ++G  ++     R M  +G+  SL TF+++  
Sbjct: 180 SALEKMREAGF--VLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMV 237

Query: 156 SYCGAGKYDEAVMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IV 213
           +  G  +  + VM   + M   G+  ++      +  + R + +   A   + R+     
Sbjct: 238 A-SGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGR-DGKIDEAYRIMKRMDDDGC 295

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            PD  ++ +L++       +++A   F +M +     P+ V  Y T L        +D+ 
Sbjct: 296 GPDVVTYTVLIDALCTARKLDDAMCLFTKM-KSSSHKPDKV-TYVTLLDKFSDCGHLDKV 353

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
            K    M+ +   P +  F+  ++ L K      A  L D M    G  P+  TYN +  
Sbjct: 354 EKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRK-QGVLPNLHTYNTLIS 412

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L++  R+ +    F  M     +PT       I     +  P  A+E +  +   GI P
Sbjct: 413 GLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAP 472

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
              + N  L  L  +GRL + +    E+ +  +    VT + + K +
Sbjct: 473 NIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCY 519



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 93/213 (43%), Gaps = 3/213 (1%)

Query: 215  PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
            PD  ++  L++   K G + E    + EM+ R      + + Y   +  L++  ++D+A+
Sbjct: 823  PDTFTYNSLIDAHGKSGKINELFDLYDEMLTR--GCKPNTITYNMVISNLVKSNRLDKAM 880

Query: 275  KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
                 +   +  PT   F   +D L+K      A +++D  MV +G  P+S  YN++   
Sbjct: 881  DLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFD-GMVHYGCRPNSAIYNILVNG 939

Query: 335  LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
              K   V    +FF  M+K   +P   +    + +L  A   + A+  +  + + G+ P 
Sbjct: 940  YGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPD 999

Query: 395  EASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
              + N ++ GL    R  +      EM NR I+
Sbjct: 1000 LVAYNLMINGLGRSQRTEEALSLFHEMQNRGIV 1032



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 105/227 (46%), Gaps = 6/227 (2%)

Query: 107  RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDE 165
            RG + +   +N+++  L K+ R ++  +    +        P TF  + D    +G+ D+
Sbjct: 854  RGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDD 913

Query: 166  AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
            A   FD M  +G   +    N L++   +       A EF  R VK+ + PD  S+ IL+
Sbjct: 914  AHEMFDGMVHYGCRPNSAIYNILVNGYGKL-GHVDTACEFFKRMVKEGIRPDLKSYTILV 972

Query: 225  EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            +     G V++A   F E +++   +P+ ++AY   +  L R ++ +EAL     M+   
Sbjct: 973  DILCIAGRVDDALHYF-EKLKQAGLDPD-LVAYNLMINGLGRSQRTEEALSLFHEMQNRG 1030

Query: 285  CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
              P L  +++ +  L  +     A ++++ +  F G  P+  TYN +
Sbjct: 1031 IVPDLYTYNSLILNLGIVGMIEEAGKIYEELQ-FIGLKPNVFTYNAL 1076


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 128/300 (42%), Gaps = 10/300 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L K    ++  + +R M   G L    T+ +I D YC      EA        
Sbjct: 258 YNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAV 317

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D V   SL++ +C  E    RALE  N  + K + PD   +  L++G   +G +
Sbjct: 318 FKGFVPDQVTYCSLINGLC-AEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 376

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR--VMKGENCFPTLKF 291
             A +   EM E  E     +  Y   +  L +   + +A   +   +MKG    P +  
Sbjct: 377 LHALQVMNEMAE--EGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGY--LPDVFT 432

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           F+  +D   K      A+QL + M  + G  PD++TYN +   L K  +V+EV + F EM
Sbjct: 433 FNTLIDGYCKRLKLDSALQLVERMWEY-GIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 491

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           I     P P+     I     +++ E A ++   + + G+ P   S N L+ G    G L
Sbjct: 492 ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 551



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 141/310 (45%), Gaps = 7/310 (2%)

Query: 115 AWNLMVDVLGKNGR-FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+N ++  L K G   E      +V++    ++L T+       C AG+  EAV   D M
Sbjct: 188 AFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGM 247

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
             + V  DVV  N+L+  +C++ +    A+ +L R+  +   PD  ++  +++G+ K   
Sbjct: 248 RAYAVP-DVVTYNTLIRGLCKK-SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISM 305

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V+EA +   + V +  + P+ V  Y + +  L     V+ AL+     + +   P +  +
Sbjct: 306 VQEATELLKDAVFK-GFVPDQV-TYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVY 363

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           ++ +  L       HA+Q+ +  M   G  PD  TYN++   L K   + +     ++ I
Sbjct: 364 NSLVKGLCLQGLILHALQVMN-EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAI 422

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
              + P      T I       + + A+++   + E GI P   + N +L GL   G+++
Sbjct: 423 MKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVN 482

Query: 413 DVRRFAEEML 422
           +V    +EM+
Sbjct: 483 EVNETFQEMI 492



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 145/337 (43%), Gaps = 15/337 (4%)

Query: 95  PSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LP--- 148
           P  A+ + R    +G     + +N ++D   K      +  A  ++K D V    +P   
Sbjct: 271 PQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCK---ISMVQEATELLK-DAVFKGFVPDQV 326

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ S+ +  C  G  + A+  F+     G++ D+V  NSL+  +C Q      AL+ +N 
Sbjct: 327 TYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ-GLILHALQVMNE 385

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + ++   PD  ++ I++ G  K GN+ +A     + + +  + P+ V  + T +    + 
Sbjct: 386 MAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMK-GYLPD-VFTFNTLIDGYCKR 443

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            ++D AL+ +  M      P    +++ L+ L K        + +   M+  G  P+ +T
Sbjct: 444 LKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQ-EMILKGCHPNPIT 502

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN++ E   ++ ++ E  K   +M +    P  ++  T I       + E A  ++  + 
Sbjct: 503 YNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLE 562

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           E G      + N L+        +    +  +EML++
Sbjct: 563 EKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSK 599



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 124/283 (43%), Gaps = 12/283 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LP---TFASIFDSYCGAGKYDEAVMSF 170
           +N++++ L K G      +A  VM  D ++   LP   TF ++ D YC   K D A+   
Sbjct: 398 YNIVINGLCKMGNIS---DATVVMN-DAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLV 453

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           + M  +G+  D +  NS+L+ +C+          F   + K   P+  ++ IL+E + + 
Sbjct: 454 ERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRS 513

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             +EEA+K   +M +    +P+ V ++ T +    R   ++ A    + ++ +    T  
Sbjct: 514 NKMEEASKVIVKMSQE-GLHPDAV-SFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATAD 571

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            F+  +       +   A +++D M+   G   DS TY ++ +   K   V        E
Sbjct: 572 TFNTLIGAFSGKLNMHMAEKIFDEMLS-KGHRADSYTYRVLIDGSCKTANVDRAYMHLVE 630

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           MIK  + P+       I  L        A+ I + +++ G++P
Sbjct: 631 MIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 673



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 126/329 (38%), Gaps = 13/329 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+N ++D L      +Q       M   GV   L T      S+C   +   A+     +
Sbjct: 87  AYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRAL 146

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G       V  L +         +R L F   +   V P+  +F  +L    K G+V
Sbjct: 147 PHRGAVAYCTVVCGLYA---HGHTHDARQL-FDQMLHTHVFPNLAAFNKVLHALCKRGDV 202

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA    G++++R      ++  Y  ++  L    ++ EA++ +  M+     P +  ++
Sbjct: 203 LEAGLLLGKVIQR--GMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAY-AVPDVVTYN 259

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +  L K +    A+     MM   G  PD  TYN I +   K   V E  +   + + 
Sbjct: 260 TLIRGLCKKSMPQEAMHYLRRMM-NQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVF 318

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG---- 409
             + P  +   + I  L    + E A+E++N     GI P     N L+ GL   G    
Sbjct: 319 KGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILH 378

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
            L  +   AEE  +  I  Y + ++ L K
Sbjct: 379 ALQVMNEMAEEGCHPDIQTYNIVINGLCK 407



 Score = 45.4 bits (106), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 57/297 (19%), Positives = 108/297 (36%), Gaps = 8/297 (2%)

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           P + +   +Y  AG+  +AV +F+ M +        A N+++ A+            ++ 
Sbjct: 51  PLYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVR 110

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +   V PD  +  I L  +        A +    +  R        +AY T +  L   
Sbjct: 111 MLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHR------GAVAYCTVVCGLYAH 164

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
               +A +    M   + FP L  F+  L  L K  D   A  L    ++  G   +  T
Sbjct: 165 GHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLG-KVIQRGMSINLFT 223

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN+    L +  R+ E  +    M +    P  +   T I  L     P+ A+     ++
Sbjct: 224 YNIWIRGLCEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMM 282

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
             G LP + + N ++ G   +  + +     ++ + +  +  +VT   L      E 
Sbjct: 283 NQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEG 339


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 145/360 (40%), Gaps = 47/360 (13%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM--KEDGVLSLPTFASIFDSYC 158
           F R    G RLS  + N M+  L K GR   + +  + M  +  GV ++ TF  + +  C
Sbjct: 182 FDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGV-NVVTFDVVINGLC 240

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
             GK+ +A    + M   G    V+  N+++   C+              V K + P+  
Sbjct: 241 KVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEI 300

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +F IL++G+ ++ NV  A K F EM +R    P +V+ Y + +  L    ++DEAL    
Sbjct: 301 TFNILIDGFCRDENVTAAKKVFEEM-QRQGLQP-NVVTYNSLINGLCSNGKLDEALGLQD 358

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M G                                     G  P+ +TYN +     K 
Sbjct: 359 KMSG------------------------------------MGLKPNVVTYNALINGFCKK 382

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
           K + E  +   ++ K    P  +   T I     A   + A  + + +L+ G+ P  ++ 
Sbjct: 383 KMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTY 442

Query: 399 NELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
           N L+VG    G + + R+ A+EM    L   ++ Y + +  L K    E+R    + D +
Sbjct: 443 NCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKK--GETRKAVRLLDEM 500



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 141/335 (42%), Gaps = 10/335 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++++++ L K G+F++  + V  MK  G   S+ T+ +I D YC AGK  +A      M
Sbjct: 231 TFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEM 290

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               +  + +  N L+   CR EN T+    F    ++ + P+  ++  L+ G    G +
Sbjct: 291 VAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKL 350

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA     + +      P +V+ Y   +    + K + EA + L  +      P +  F+
Sbjct: 351 DEA-LGLQDKMSGMGLKP-NVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D   K      A  L   MM+  G  P+  TYN +     +   V E  K   EM  
Sbjct: 409 TLIDAYGKAGRMDDAFLLRS-MMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEG 467

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS- 412
           N  +   +     +  L    E   A+ + + + E G+ P   + N L+ G    G  + 
Sbjct: 468 NGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTA 527

Query: 413 --DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             +VR   E+   RR  I  VT + L K F N+ +
Sbjct: 528 ALNVRTLMEKK-GRRANI--VTYNVLIKGFCNKGK 559



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 88/183 (48%), Gaps = 5/183 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +N ++D  GK GR +  +    +M + GV  ++ T+  +   +C  G   E
Sbjct: 398 RGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKE 457

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A      M  +G++ D+V  N L+ A+C++  +T +A+  L+ + ++ ++P   ++  L+
Sbjct: 458 ARKLAKEMEGNGLKADLVTYNILVDALCKK-GETRKAVRLLDEMFEVGLNPSHLTYNALI 516

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G+ +EGN   A      M ++      +++ Y   +       +++EA + L  M  + 
Sbjct: 517 DGYFREGNSTAALNVRTLMEKK--GRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKG 574

Query: 285 CFP 287
             P
Sbjct: 575 LIP 577


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 137/314 (43%), Gaps = 4/314 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A N+++D L K GRF+ MW     M   G   ++ T+ ++ D  C  G + +A   FD M
Sbjct: 160 ACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEM 219

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               +   VV    L+  +C +   +     F       + P+  ++  +++G+ K  +V
Sbjct: 220 IEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHV 279

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A + + EM+   +    +V+ +   +  L +  ++  A KFL  M      P +  ++
Sbjct: 280 KKALELYQEMLG--DGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYN 337

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D   K  + + A+ L    +  H   PD  TY+++ + L    R+ E +    EM K
Sbjct: 338 CLIDGYCKAGNLSEALSLHS-EIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKK 396

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
             + P  +   T I         E AIE+ + + E GI P   + + L+ G    G++  
Sbjct: 397 KGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEA 456

Query: 414 VRRFAEEMLNRRIL 427
                 EM+ + +L
Sbjct: 457 AMGLYTEMVIKGLL 470



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 122/318 (38%), Gaps = 7/318 (2%)

Query: 110 RLSPYAWNLMVDVLGKNGRFEQ-MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           + +P  + +++    + G  E+ +W      K D + ++     + D     G++D    
Sbjct: 123 KFTPNVFGVLIIAFSEMGLVEEALW---VYYKMDVLPAMQACNMVLDGLVKKGRFDTMWK 179

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            +  M   G   +VV   +L+   CRQ +       F   ++K + P    + IL+ G  
Sbjct: 180 VYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLC 239

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
            E  + EA   F  M  R      ++  Y T +    +   V +AL+  + M G+   P 
Sbjct: 240 GESRISEAESMFRTM--RNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPN 297

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  F   +D L K ++   A +    M  F G  P+   YN + +   K   + E     
Sbjct: 298 VVTFGILIDGLCKTDEMVSARKFLIDMASF-GVVPNIFVYNCLIDGYCKAGNLSEALSLH 356

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            E+ K+E  P     +  I  L   D  E A  +   + + G LP   + N L+ G    
Sbjct: 357 SEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKE 416

Query: 409 GRLSDVRRFAEEMLNRRI 426
           G +        +M  + I
Sbjct: 417 GNMEKAIEVCSQMTEKGI 434



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 71/342 (20%), Positives = 144/342 (42%), Gaps = 11/342 (3%)

Query: 108 GQRLSPYAWNLMVDVLG--KNGRFEQMWNAV-RVMK--EDGVLSLPTFASIFDSYCGAGK 162
           G +L   A  LM D++   +N R  ++  +V  V+   E    +   F  +  ++   G 
Sbjct: 82  GAKLYAKARCLMRDLIQCLQNSRRSRICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGL 141

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            +EA+  +  M +    Q   A N +L  + ++    +    + + V +   P+  ++  
Sbjct: 142 VEEALWVYYKMDVLPAMQ---ACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGT 198

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  ++G+  +A + F EM+E+  +    V+ Y   +  L    ++ EA    R M+ 
Sbjct: 199 LIDGCCRQGDFLKAFRLFDEMIEKKIF--PTVVIYTILIRGLCGESRISEAESMFRTMRN 256

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
               P L  ++  +D   K+     A++L+   M+  G  P+ +T+ ++ + L K   + 
Sbjct: 257 SGMLPNLYTYNTMMDGYCKIAHVKKALELYQ-EMLGDGLLPNVVTFGILIDGLCKTDEMV 315

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
              KF  +M      P        I     A     A+ + + I ++ ILP   + + L+
Sbjct: 316 SARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILI 375

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            GL  + R+ +     +EM  +  L   VT + L   +  E 
Sbjct: 376 KGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEG 417



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 83/172 (48%), Gaps = 3/172 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +++++  L    R E+    ++ MK+ G L +  T+ ++ D YC  G  ++A+     
Sbjct: 369 FTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQ 428

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M+  G+E +++  ++L+   C+     +    +   V K + PD  ++  L++G  K+GN
Sbjct: 429 MTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGN 488

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            +EA +   EM E    +P +V      +  L +  ++ +A+K      G +
Sbjct: 489 TKEAFRLHKEMQEA-GLHP-NVFTLSCLIDGLCKDGRISDAIKLFLAKTGTD 538


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 137/314 (43%), Gaps = 6/314 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N M+  L ++G+ E        M+  G+   + T+ S+ + YC AG   EA++ F  + 
Sbjct: 346 YNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLR 405

Query: 175 MHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             G+   V+  N L+   CR  + + +R L+    V++   PD  ++ IL++G     ++
Sbjct: 406 HAGLAPTVLTYNILIDGYCRLGDLEEARRLKE-EMVEQGCLPDVCTYTILMKGSHNACSL 464

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A + F EM+ +    P+   AY T +   +    + +A +   VM  E        ++
Sbjct: 465 AMAREFFDEMLSK-GLQPD-CFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYN 522

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D L K  +   A  L  + MV +G  PD +TY  +     +   + E  KFF +MI 
Sbjct: 523 ILIDGLCKTGNLNDAKDL-QMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMIS 581

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           +   P+ +     I           A   +  +LE G+ P E + N L+  L   GR   
Sbjct: 582 DGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQL 641

Query: 414 VRRFAEEMLNRRIL 427
             R   EML R ++
Sbjct: 642 AYRHFHEMLERGLV 655



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 122/295 (41%), Gaps = 20/295 (6%)

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL---EFLNRVKKIVDPD 216
           A ++D+       M   G+E  +V  N+LL +  ++      A+   E   R    + P+
Sbjct: 215 AARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCL-PN 273

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALK 275
             +  +++ G  ++G++EEA     EMVE    + +     Y   +  L+    V +A  
Sbjct: 274 DVTHNVVITGLARKGDLEEA----AEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADD 329

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
               M+ E   PT+  ++  +  L++ +    A Q+  + M   G  PD +TYN +    
Sbjct: 330 LQLEMENEGIMPTVVTYNAMIHGLLQ-SGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGY 388

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
            K   + E    F ++      PT L     I       + E A  +   ++E G LP  
Sbjct: 389 CKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDV 448

Query: 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRRI----------LIYEVTMHKLKKAF 440
            +   L+ G  N   L+  R F +EML++ +          +  E+T+  + KAF
Sbjct: 449 CTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAF 503



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 118/292 (40%), Gaps = 12/292 (4%)

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
           +F  M+ HGV  DV   N +L  +                ++  ++P   ++  LL+ + 
Sbjct: 189 AFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFL 248

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF---LRVMKGENC 285
           KEG  ++      EM  R      + + +   +  L R   ++EA +    +R+ K  + 
Sbjct: 249 KEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASS 308

Query: 286 FPTLKFFSNAL-DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           F      +  L    VK  D         + M   G  P  +TYN +   L+++ +V   
Sbjct: 309 FTYNPLITGLLAKGFVKKADD------LQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAA 362

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
           +  F EM     QP  +   + +     A   + A+ ++  +   G+ P   + N L+ G
Sbjct: 363 QVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDG 422

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE-SRSM-RDIFDSL 454
              LG L + RR  EEM+ +  L    T   L K  +N  S +M R+ FD +
Sbjct: 423 YCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEM 474



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 8/222 (3%)

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           +VM + G+  D V  N L+  +C+  N        +  V   + PD  ++  L+    + 
Sbjct: 507 EVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCER 566

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G + EA K F +M+   +      + Y  F+    R   +  A  + R M  E   P   
Sbjct: 567 GLLREARKFFKDMIS--DGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEI 624

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            ++  +  L +   +  A + +  M+   G  P+  TY ++ +   K     +  +F+ E
Sbjct: 625 TYNVLIHALCRTGRTQLAYRHFHEMLE-RGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFE 683

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
           M +N   P  L    A+    D      AIE     LEN +L
Sbjct: 684 MHQNGIHPDYLT-HKALFKGFDEGHMNHAIE----YLENAVL 720



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 1/129 (0%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  ++    + G   +     + M  DG+  S  T+     +YC  G    A   F  M 
Sbjct: 556 YTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKML 615

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             GVE + +  N L+ A+CR          F   +++ + P+  ++ +L++G  KEGN E
Sbjct: 616 EEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWE 675

Query: 235 EANKTFGEM 243
           +A + + EM
Sbjct: 676 DAMRFYFEM 684


>gi|293336971|ref|NP_001167873.1| uncharacterized protein LOC100381578 [Zea mays]
 gi|223944573|gb|ACN26370.1| unknown [Zea mays]
 gi|414585240|tpg|DAA35811.1| TPA: hypothetical protein ZEAMMB73_503732 [Zea mays]
          Length = 640

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 118/247 (47%), Gaps = 4/247 (1%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGR-FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYD 164
           G G+ +  +A+ L++  L K+G+ FE +    R+ K     +   + ++ DS    G+  
Sbjct: 306 GMGKEIPQHAYVLVIGALSKDGKPFEALAVFERMSKRGCPANAAMYTALIDSMGKFGREK 365

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA+  F+ M   G+E D V    +++ +CR  N       F + V+K V  +   +  L+
Sbjct: 366 EAMALFERMKATGIELDAVTYGVVVNCLCRFGNLEEALACFRSCVEKGVAVNAIFYTSLI 425

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G+ K G V++A + F EMV +  + P+    Y   +  L++  + D+A  F + M+ + 
Sbjct: 426 DGFGKTGMVDQAKELFEEMVAK-GFVPDSY-CYNVLIDALVKAGRTDDACAFYKRMEDDG 483

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C  T+  ++  +D L K + +  A++ WD  M+  G  P +  +  +   L  + +    
Sbjct: 484 CDQTVYTYTILIDGLFKEHKNEEALKFWD-SMIDKGITPTAAAFRALSNGLCLSGKFSRA 542

Query: 345 EKFFHEM 351
            +   E+
Sbjct: 543 WRILDEL 549



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/384 (21%), Positives = 160/384 (41%), Gaps = 16/384 (4%)

Query: 50  SSSARIICEILAHASSDDIE---SALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRW 104
           +SSA +I  + A   S+++     A+   G+ P+    + +L   ++ D   +A++ F  
Sbjct: 170 ASSASLIRSLAAFGLSEELLWAWQAMRLAGVEPSRLTYNCLLDGLVNADLLDTAINVFDA 229

Query: 105 AGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP--TFASIFDSYCGA 160
                R+ P   ++N+++    + GR +     +  M+E   L+    T+ ++   +   
Sbjct: 230 MSTEHRVRPDVVSYNILIKGYCRAGRTQDAMARLADMREHAELAPDKVTYLTLMQRHYSE 289

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVA-VNSLLSAICRQENQTSRALEFLNRVKKIVDP-DGD 218
             + + +  F  M   G+ +++      L+     ++ +   AL    R+ K   P +  
Sbjct: 290 ATFPQCIALFQEMEERGMGKEIPQHAYVLVIGALSKDGKPFEALAVFERMSKRGCPANAA 349

Query: 219 SFAILLEGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +  L++   K G  +EA   F  M     E +    + Y   +  L R   ++EAL   
Sbjct: 350 MYTALIDSMGKFGREKEAMALFERMKATGIELD---AVTYGVVVNCLCRFGNLEEALACF 406

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
           R    +       F+++ +D   K      A +L++  MV  G  PDS  YN++ + L+K
Sbjct: 407 RSCVEKGVAVNAIFYTSLIDGFGKTGMVDQAKELFE-EMVAKGFVPDSYCYNVLIDALVK 465

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             R  +   F+  M  +    T       I  L    + E A++ W+ +++ GI P  A+
Sbjct: 466 AGRTDDACAFYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDSMIDKGITPTAAA 525

Query: 398 ANELLVGLRNLGRLSDVRRFAEEM 421
              L  GL   G+ S   R  +E+
Sbjct: 526 FRALSNGLCLSGKFSRAWRILDEL 549


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 128/300 (42%), Gaps = 10/300 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L K    ++  + +R M   G L    T+ +I D YC      EA        
Sbjct: 259 YNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAV 318

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D V   SL++ +C  E    RALE  N  + K + PD   +  L++G   +G +
Sbjct: 319 FKGFVPDQVTYCSLINGLC-AEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 377

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR--VMKGENCFPTLKF 291
             A +   EM E  E     +  Y   +  L +   + +A   +   +MKG    P +  
Sbjct: 378 LHALQVMNEMAE--EGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGY--LPDVFT 433

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           F+  +D   K      A+QL + M  + G  PD++TYN +   L K  +V+EV + F EM
Sbjct: 434 FNTLIDGYCKRLKLDSALQLVERMWEY-GIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 492

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           I     P P+     I     +++ E A ++   + + G+ P   S N L+ G    G L
Sbjct: 493 ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 552



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 141/310 (45%), Gaps = 7/310 (2%)

Query: 115 AWNLMVDVLGKNGR-FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+N ++  L K G   E      +V++    ++L T+       C AG+  EAV   D M
Sbjct: 189 AFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGM 248

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
             + V  DVV  N+L+  +C++ +    A+ +L R+  +   PD  ++  +++G+ K   
Sbjct: 249 RAYAVP-DVVTYNTLIRGLCKK-SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISM 306

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V+EA +   + V +  + P+ V  Y + +  L     V+ AL+     + +   P +  +
Sbjct: 307 VQEATELLKDAVFK-GFVPDQV-TYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVY 364

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           ++ +  L       HA+Q+ +  M   G  PD  TYN++   L K   + +     ++ I
Sbjct: 365 NSLVKGLCLQGLILHALQVMN-EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAI 423

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
              + P      T I       + + A+++   + E GI P   + N +L GL   G+++
Sbjct: 424 MKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVN 483

Query: 413 DVRRFAEEML 422
           +V    +EM+
Sbjct: 484 EVNETFQEMI 493



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 145/337 (43%), Gaps = 15/337 (4%)

Query: 95  PSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LP--- 148
           P  A+ + R    +G     + +N ++D   K      +  A  ++K D V    +P   
Sbjct: 272 PQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCK---ISMVQEATELLK-DAVFKGFVPDQV 327

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ S+ +  C  G  + A+  F+     G++ D+V  NSL+  +C Q      AL+ +N 
Sbjct: 328 TYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ-GLILHALQVMNE 386

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + ++   PD  ++ I++ G  K GN+ +A     + + +  + P+ V  + T +    + 
Sbjct: 387 MAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMK-GYLPD-VFTFNTLIDGYCKR 444

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            ++D AL+ +  M      P    +++ L+ L K        + +   M+  G  P+ +T
Sbjct: 445 LKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQ-EMILKGCHPNPIT 503

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN++ E   ++ ++ E  K   +M +    P  ++  T I       + E A  ++  + 
Sbjct: 504 YNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLE 563

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           E G      + N L+        +    +  +EML++
Sbjct: 564 EKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSK 600



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 124/283 (43%), Gaps = 12/283 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LP---TFASIFDSYCGAGKYDEAVMSF 170
           +N++++ L K G      +A  VM  D ++   LP   TF ++ D YC   K D A+   
Sbjct: 399 YNIVINGLCKMGNIS---DATVVMN-DAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLV 454

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           + M  +G+  D +  NS+L+ +C+          F   + K   P+  ++ IL+E + + 
Sbjct: 455 ERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRS 514

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             +EEA+K   +M +    +P+ V ++ T +    R   ++ A    + ++ +    T  
Sbjct: 515 NKMEEASKVIVKMSQE-GLHPDAV-SFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATAD 572

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            F+  +       +   A +++D M+   G   DS TY ++ +   K   V        E
Sbjct: 573 TFNTLIGAFSGKLNMHMAEKIFDEMLS-KGHRADSYTYRVLIDGSCKTANVDRAYMHLVE 631

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           MIK  + P+       I  L        A+ I + +++ G++P
Sbjct: 632 MIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 674



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 126/329 (38%), Gaps = 13/329 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+N ++D L      +Q       M   GV   L T      S+C   +   A+     +
Sbjct: 88  AYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRAL 147

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G       V  L +         +R L F   +   V P+  +F  +L    K G+V
Sbjct: 148 PHRGAVAYCTVVCGLYA---HGHTHDARQL-FDQMLHTHVFPNLAAFNKVLHALCKRGDV 203

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA    G++++R      ++  Y  ++  L    ++ EA++ +  M+     P +  ++
Sbjct: 204 LEAGLLLGKVIQR--GMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAY-AVPDVVTYN 260

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +  L K +    A+     MM   G  PD  TYN I +   K   V E  +   + + 
Sbjct: 261 TLIRGLCKKSMPQEAMHYLRRMM-NQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVF 319

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG---- 409
             + P  +   + I  L    + E A+E++N     GI P     N L+ GL   G    
Sbjct: 320 KGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILH 379

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
            L  +   AEE  +  I  Y + ++ L K
Sbjct: 380 ALQVMNEMAEEGCHPDIQTYNIVINGLCK 408



 Score = 45.1 bits (105), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 57/297 (19%), Positives = 108/297 (36%), Gaps = 8/297 (2%)

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           P + +   +Y  AG+  +AV +F+ M +        A N+++ A+            ++ 
Sbjct: 52  PLYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVR 111

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +   V PD  +  I L  +        A +    +  R        +AY T +  L   
Sbjct: 112 MLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHR------GAVAYCTVVCGLYAH 165

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
               +A +    M   + FP L  F+  L  L K  D   A  L    ++  G   +  T
Sbjct: 166 GHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLG-KVIQRGMSINLFT 224

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN+    L +  R+ E  +    M +    P  +   T I  L     P+ A+     ++
Sbjct: 225 YNIWIRGLCEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMM 283

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
             G LP + + N ++ G   +  + +     ++ + +  +  +VT   L      E 
Sbjct: 284 NQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEG 340


>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
 gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
          Length = 694

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 152/365 (41%), Gaps = 44/365 (12%)

Query: 115 AWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
            +N+M++ L K GRF++   MW   R+ K +  + L T++S+    C  G  D AV  + 
Sbjct: 257 TYNVMINGLCKMGRFDESLEMWE--RMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYK 314

Query: 172 VMSMHGVEQDVVAVNSLLSAICR---------------QENQTS--------RALEFLNR 208
            M    V  DVV  N+LL+  CR               +EN  +        R L F NR
Sbjct: 315 EMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKENCHNVVSYNIFIRGL-FENR 373

Query: 209 V------------KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
                        ++    D  ++ +L+ G  K G++ +A K   E   +   +     A
Sbjct: 374 KVEEAISVWELLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKE--AKDGGDKLDAFA 431

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           Y + +  L +  +VDEAL  +  M    C  +    +  ++  V+ +    A+  +  M 
Sbjct: 432 YSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREME 491

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
              G  P  ++YN +   L K +R  +   F  EM++ +W+P  +  +  +  L    + 
Sbjct: 492 T-KGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKI 550

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           ++A+ +W  +L  G+ P     N L+ GL + G++ D       M     L   VT + L
Sbjct: 551 DMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTL 610

Query: 437 KKAFY 441
               Y
Sbjct: 611 MDGLY 615



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 141/322 (43%), Gaps = 10/322 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           RG       +N+M+D   K G + Q   +W   R++K   V  ++ T+  + +  C  G+
Sbjct: 213 RGLVPDVMCYNIMIDGFFKRGDYVQGKEIWE--RLVKGSCVYPNVVTYNVMINGLCKMGR 270

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
           +DE++  ++ M  +  E D+   +SL+  +C   N       +   VK+ V  D  ++  
Sbjct: 271 FDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNA 330

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           LL G+ + G ++E   +F   V   + N  +V++Y  F+  L   ++V+EA+    +++ 
Sbjct: 331 LLNGFCRAGKIKE---SFELWVMMGKENCHNVVSYNIFIRGLFENRKVEEAISVWELLRR 387

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
                    +   +  L K      A+++        G   D+  Y+ I + L K  RV 
Sbjct: 388 RGSGADSTTYGVLIHGLCKNGHLNKALKILK-EAKDGGDKLDAFAYSSIVDGLSKQGRVD 446

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E     H+M K   + +P  C   I   + A + E AI  +  +   G  P   S N L+
Sbjct: 447 EALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNTLI 506

Query: 403 VGLRNLGRLSDVRRFAEEMLNR 424
            GL    R SD   F +EML +
Sbjct: 507 NGLCKAERFSDAYSFVKEMLEK 528



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 133/337 (39%), Gaps = 45/337 (13%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFA--SIFDSYCGAGK 162
           RG       + +++  L KNG   +   A++++KE  DG   L  FA  SI D     G+
Sbjct: 388 RGSGADSTTYGVLIHGLCKNGHLNK---ALKILKEAKDGGDKLDAFAYSSIVDGLSKQGR 444

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            DEA+     M  +G E      N L++   R          F     K   P   S+  
Sbjct: 445 VDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNT 504

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G  K     +A     EM+E+ +W P+ ++ Y   +  L +GK++D AL   R    
Sbjct: 505 LINGLCKAERFSDAYSFVKEMLEK-DWKPD-MITYSLLMDGLCQGKKIDMALNLWR---- 558

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
                          +LVK                  G  PD   +N++   L    ++ 
Sbjct: 559 --------------QVLVK------------------GLEPDVTMHNILMHGLCSAGKIE 586

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +    +  M ++   P  +   T +  L  A E E+A  IW  + +NG  P   S N  L
Sbjct: 587 DALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQPDIISYNITL 646

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
            GL + GR+SD     ++ L   IL   +T + L +A
Sbjct: 647 KGLCSCGRISDGIALFDDALKNGILPTSITWYILVRA 683



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 154/349 (44%), Gaps = 22/349 (6%)

Query: 78  IPTPDLVHEVLQL--SYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMW 133
           +P P    ++ +L  +  SP SA+  F  A R  G   SP+ + L++  L        + 
Sbjct: 4   LPKPLSARQLFKLLKAEKSPKSALALFDSASRQPGYTHSPHIFLLILRRLSDPKLVVHVT 63

Query: 134 NAVRVMK-------EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS-MHGVEQDVVAV 185
             V ++K       ED VL+      +  +Y  +   +EA+  F  M  + G +  + + 
Sbjct: 64  RIVELIKTQKCKCTEDVVLT------VLKAYAKSKMPNEALDCFQKMEEIFGCKPGIRSY 117

Query: 186 NSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
           N+LL+A   + N   +A  FL   + + + P+  ++ IL++   K+    EA      M 
Sbjct: 118 NALLNAFI-EANLLEKAESFLAYFETVGILPNLQTYNILIKISVKKRQFVEAKGLLDWMW 176

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
            + +  P+ V +Y T +  +++   +  AL+    M      P +  ++  +D   K  D
Sbjct: 177 SK-DLKPD-VYSYGTVINGMVKSGDLVSALEVFDEMFERGLVPDVMCYNIMIDGFFKRGD 234

Query: 305 STHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
                ++W+ ++     +P+ +TYN++   L K  R  E  + +  M KNE +      +
Sbjct: 235 YVQGKEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYS 294

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           + I  L D    + A+E++  +++  ++    + N LL G    G++ +
Sbjct: 295 SLICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKE 343


>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
 gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 159/377 (42%), Gaps = 58/377 (15%)

Query: 117 NLMVDVLGKNGRFE---QMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           N+M+  L K GR +   ++W   R+ + +    L T++S+    C AG  D+A   F+ +
Sbjct: 259 NIMISGLSKCGRVDDCLKIWE--RMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNEL 316

Query: 174 SMHGVEQDVVAVNSLLSAICR-----QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
                  DVV  N++L   CR     +  +  R +E  N V  +      S+ IL++G  
Sbjct: 317 DERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIV------SYNILIKGLL 370

Query: 229 KEGNVEEA--------------------------------NKTFGEMVERFEWNPEH--V 254
           + G ++EA                                NK  G M E  E +  H  V
Sbjct: 371 ENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQE-VESSGGHLDV 429

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK--LNDSTHA-VQL 311
            AY + +  L + K+++EA   ++ M        ++  S+  + L+   + DS       
Sbjct: 430 YAYASIIDCLCKKKRLEEASNLVKEMSKHG----VELNSHVCNALIGGLIRDSRLGEASF 485

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
           +   M  +G  P  ++YN++   L K  +  E   F  EM++N W+P     +  +  L 
Sbjct: 486 FLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLC 545

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 431
              + ++A+E+W+  L++G+       N L+ GL ++G+L D       M +R      V
Sbjct: 546 RDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLV 605

Query: 432 TMHKLKKAFYNESRSMR 448
           T + L + F+    S R
Sbjct: 606 TYNTLMEGFFKVGDSNR 622



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 153/398 (38%), Gaps = 86/398 (21%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           +F  AG    L  Y  N+++ +  K   FE+    +  M ++G    + +++++ +    
Sbjct: 139 YFETAGVAPNLQTY--NVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAK 196

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV--KKIVDPDG 217
           AGK D+A+  FD MS  GV  DV   N L+    ++++  + A+E  +R+     V P+ 
Sbjct: 197 AGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKT-AMELWDRLLEDSSVYPNV 255

Query: 218 DSFAILLEG-------------WEK----------------------EGNVEEANKTFGE 242
            +  I++ G             WE+                       GNV++A   F E
Sbjct: 256 KTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNE 315

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK- 301
           + ER       V+ Y T L    R  ++ E+L+  R+M+ +N    + +     +IL+K 
Sbjct: 316 LDERKA--SIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSY-----NILIKG 368

Query: 302 -LNDST--HAVQLWDIM-------------MVFH---------------------GAFPD 324
            L +     A  +W +M             +  H                     G   D
Sbjct: 369 LLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLD 428

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
              Y  I +CL K KR+ E      EM K+  +     C   I  L+       A     
Sbjct: 429 VYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLR 488

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
            + +NG  P   S N L+ GL   G+  +   F +EML
Sbjct: 489 EMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEML 526



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 119/294 (40%), Gaps = 47/294 (15%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGAG 161
            +G       + + +  L  NG   +   A+ VM+E     G L +  +ASI D  C   
Sbjct: 387 AKGYAADKTTYGIFIHGLCVNGYVNK---ALGVMQEVESSGGHLDVYAYASIIDCLCKKK 443

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSF 220
           + +EA      MS HGVE +    N+L+  + R +++   A  FL  + K    P   S+
Sbjct: 444 RLEEASNLVKEMSKHGVELNSHVCNALIGGLIR-DSRLGEASFFLREMGKNGCRPTVVSY 502

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL----KF 276
            IL+ G  K G   EA+    EM+E   W P+ +  Y   L  L R +++D AL    +F
Sbjct: 503 NILICGLCKAGKFGEASAFVKEMLEN-GWKPD-LKTYSILLCGLCRDRKIDLALELWHQF 560

Query: 277 LRV-------------------------------MKGENCFPTLKFFSNALDILVKLNDS 305
           L+                                M+  NC   L  ++  ++   K+ DS
Sbjct: 561 LQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDS 620

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
             A  +W  M    G  PD ++YN I + L   + V    +FF +   +   PT
Sbjct: 621 NRATVIWGYMYKM-GLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPT 673



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 119/263 (45%), Gaps = 3/263 (1%)

Query: 152 SIFDSYCGAGKYDEAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
           S+  +Y      D+A+  F  M  + G E  + + N+LL+A    +        F     
Sbjct: 83  SVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFET 142

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
             V P+  ++ +L++   K+   E+A + F + + +  + P+ V +Y T +  L +  ++
Sbjct: 143 AGVAPNLQTYNVLIKMSCKKKEFEKA-RGFLDWMWKEGFKPD-VFSYSTVINDLAKAGKL 200

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
           D+AL+    M      P +  ++  +D  +K  D   A++LWD ++     +P+  T+N+
Sbjct: 201 DDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNI 260

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +   L K  RV +  K +  M +NE +      ++ I  L DA   + A  ++N + E  
Sbjct: 261 MISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERK 320

Query: 391 ILPLEASANELLVGLRNLGRLSD 413
                 + N +L G    G++ +
Sbjct: 321 ASIDVVTYNTMLGGFCRCGKIKE 343



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 108/251 (43%), Gaps = 6/251 (2%)

Query: 43  HLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQ-LSYDSPSSAVDF 101
           HLD    +S    +C+      + ++   ++  G+     + + ++  L  DS      F
Sbjct: 426 HLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASF 485

Query: 102 F-RWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYC 158
           F R  G+ G R +  ++N+++  L K G+F +    V+ M E+G    L T++ +    C
Sbjct: 486 FLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLC 545

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
              K D A+  +      G+E DV+  N L+  +C             N   +    +  
Sbjct: 546 RDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLV 605

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  L+EG+ K G+   A   +G M  +    P+ +++Y T +  L   + V  A++F  
Sbjct: 606 TYNTLMEGFFKVGDSNRATVIWGYMY-KMGLQPD-IISYNTIMKGLCMCRGVSYAMEFFD 663

Query: 279 VMKGENCFPTL 289
             +    FPT+
Sbjct: 664 DARNHGIFPTV 674


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 146/339 (43%), Gaps = 15/339 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++ +++ L K G        ++ M+E G   ++  +++I DS C      EA+     M
Sbjct: 84  TYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEM 143

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  +VV  +S+L   C           F   V++ V PD  +F IL++G  KEG +
Sbjct: 144 VNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMI 203

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA   F  M+E+      +V  Y   +       Q+DEA K   +M  + C P+++ + 
Sbjct: 204 LEAQCVFETMIEK--GVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSY- 260

Query: 294 NALDILVKLNDSTHAVQLWDIMM--VFHGAF-PDSLTYNMIFECLIKNKRVHEVEKFFHE 350
              +IL+K +  +  +     ++  + H A  PD++TY+ + +   ++ R  + +K   E
Sbjct: 261 ---NILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEE 317

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M      P  +  +  +  L      + A E+   + E+ I P       L+ G+ N G+
Sbjct: 318 MRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGK 377

Query: 411 LSDVRRFAEEMLNRRI----LIYEVTMHK-LKKAFYNES 444
           L   R     +  + I    + Y V +   LK    NE+
Sbjct: 378 LEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEA 416



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 131/313 (41%), Gaps = 42/313 (13%)

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV 136
           ++    ++H    L   + ++++ F +   R        +N++VD L K G   +     
Sbjct: 152 VVTYSSILHGFCNLGRSNEATSL-FKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVF 210

Query: 137 RVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
             M E GV  ++ T+ ++ D YC   + DEA   F++M   G    V + N L+   C+ 
Sbjct: 211 ETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKS 270

Query: 196 ENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV 254
             +   A   L  +  K + PD  +++ L++G+ ++G  ++A K   EM   +   P+ +
Sbjct: 271 -GRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEM-RSYGLLPD-L 327

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL--------------------KFFSN 294
           + Y   L  L +   +DEA + L+ M+     P +                    + FSN
Sbjct: 328 MTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSN 387

Query: 295 ---------------ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
                           +  L+K   S  A +L+  M V HG  P+S TYN+I +  ++N 
Sbjct: 388 LFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAV-HGCLPNSCTYNVIIQGFLRNG 446

Query: 340 RVHEVEKFFHEMI 352
                 +   EM+
Sbjct: 447 DTSNAGRLIEEMV 459



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 131/300 (43%), Gaps = 7/300 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDV---MSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           T   + + +C +  +D    +F V   M   G++ + V  ++LL+ +  +         F
Sbjct: 12  TLTILINCFCHS-NHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLF 70

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              VK   +PD  +++ ++ G  K G+   A +   +M E+      +V+ Y T + +L 
Sbjct: 71  DEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEK--GCKPNVVVYSTIIDSLC 128

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           + K + EA++FL  M      P +  +S+ L     L  S  A  L+   MV     PD+
Sbjct: 129 KDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFK-QMVERNVMPDT 187

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +T+N++ + L K   + E +  F  MI+   +P        +       + + A +++N 
Sbjct: 188 VTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNI 247

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           ++  G  P   S N L+ G    GR+ + +    EM ++ +    VT   L K F  + R
Sbjct: 248 MVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGR 307



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 133/304 (43%), Gaps = 4/304 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + +   ++ ++D L K+    +    +  M   G+  ++ T++SI   +C  G+ +E
Sbjct: 111 KGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNE 170

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   F  M    V  D V  N L+  + ++         F   ++K V+P+ +++  L++
Sbjct: 171 ATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMD 230

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +  ++EA K F  MV +       V +Y   +    +  ++DEA   L  M  +  
Sbjct: 231 GYCSQSQMDEAQKLFNIMVRK--GCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKAL 288

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    +S  +    +      A +L + M  + G  PD +TY+++ + L K   + E  
Sbjct: 289 TPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSY-GLLPDLMTYSIVLDGLCKQGHLDEAF 347

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           +    M +++ +P        I  + +  + E A E+++ +   GI P   +   ++ GL
Sbjct: 348 ELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGL 407

Query: 406 RNLG 409
              G
Sbjct: 408 LKGG 411



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/345 (20%), Positives = 142/345 (41%), Gaps = 44/345 (12%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT--------- 199
           TF+++ +      K  +AV  FD M   G E DV+  +++++ +C+  + T         
Sbjct: 49  TFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKM 108

Query: 200 -------------------------SRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
                                    + A+EFL+  V + + P+  +++ +L G+   G  
Sbjct: 109 EEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRS 168

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA   F +MVER    P+ V  +   +  L +   + EA      M  +   P +  ++
Sbjct: 169 NEATSLFKQMVER-NVMPDTV-TFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYN 226

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D     +    A +L++I MV  G  P   +YN++ +   K+ R+ E +    EM  
Sbjct: 227 ALMDGYCSQSQMDEAQKLFNI-MVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSH 285

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               P  +  +T +        P+ A ++   +   G+LP   + + +L GL   G L +
Sbjct: 286 KALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDE 345

Query: 414 ----VRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
               ++   E  +   I IY + +  +    + +  + R++F +L
Sbjct: 346 AFELLKAMQESKIEPNIFIYTILIQGMCN--FGKLEAARELFSNL 388



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 56/127 (44%)

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
           G  P+ +T++ +   L    ++ +  K F EM+K  ++P  +  +T I  L       +A
Sbjct: 42  GLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMA 101

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
           I++   + E G  P     + ++  L     +++   F  EM+NR I    VT   +   
Sbjct: 102 IQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHG 161

Query: 440 FYNESRS 446
           F N  RS
Sbjct: 162 FCNLGRS 168


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/396 (19%), Positives = 163/396 (41%), Gaps = 10/396 (2%)

Query: 55  IICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFF----RWAGRGQR 110
           ++C+      ++++ + +     +P     +  + + Y S     D +    R   RG  
Sbjct: 27  VLCKAGRLGEAEELFAQMEAERSVPCA-YAYNTMIMGYGSAGRFEDAYKLLERLRERGCI 85

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
            S  ++N ++  LGK  + ++  +   VMK+D   +  T+  I D  C  G+ +EA    
Sbjct: 86  PSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRIL 145

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           D M    +  +++ VN ++  +C+          F +  ++  +PD  ++  L++G  K+
Sbjct: 146 DEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKK 205

Query: 231 GNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           G V+EA + F +M++     NP   + Y + +       + ++  K  + +    C P L
Sbjct: 206 GQVDEAYRLFEKMLDAGHNANP---VVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDL 262

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
              +  +D + K  +      +++ +  + G  PD  +Y+++   L K  +  E    FH
Sbjct: 263 TLLNTYMDCVFKAGEVEKGRMIFEDIRSY-GFLPDVRSYSILIHGLTKAGQARETSNIFH 321

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
            M +  +          +     + +   A EI   + E  + P  A+   ++ GL  + 
Sbjct: 322 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKID 381

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           RL +     EE  ++ I +  V    L   F    R
Sbjct: 382 RLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGR 417



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 114/262 (43%), Gaps = 8/262 (3%)

Query: 202 ALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           A +F + +K + + PD  S+  ++    K G + EA + F +M    E +     AY T 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQM--EAERSVPCAYAYNTM 59

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           ++      + ++A K L  ++   C P++  F++ L  L K      A+ L+++M     
Sbjct: 60  IMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK--KD 117

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
           A P+S TYN+I + L    RV E  +   EM      P  L     +  L  A + E A 
Sbjct: 118 AEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAY 177

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           +I+    + G  P   +   L+ GL   G++ +  R  E+ML+       V    L + F
Sbjct: 178 KIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNF 237

Query: 441 YNESRS--MRDIFDSLERR-CK 459
           +   R      IF  L RR CK
Sbjct: 238 FIHGRKEDGHKIFKELIRRGCK 259



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 70/377 (18%), Positives = 146/377 (38%), Gaps = 39/377 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDE 165
           RG       +  ++D LGK G+ ++ +     M + G  + P  + S+  ++   G+ ++
Sbjct: 186 RGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKED 245

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
               F  +   G + D+  +N+ +  + +        + F +       PD  S++IL+ 
Sbjct: 246 GHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIH 305

Query: 226 GWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           G  K G   E +  F  M ++ F  +     AY   +    +  +V +A + L  MK + 
Sbjct: 306 GLTKAGQARETSNIFHAMKQQGFALDAR---AYNAVVDGFCKSGKVHKAYEILEEMKEKC 362

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWD------------------------------- 313
             PT+  +   +D L K++    A  L++                               
Sbjct: 363 VQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAY 422

Query: 314 -IM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
            I+  M+  G  P+  T+N + + L+K + ++E    F  M + +  P     +  I  L
Sbjct: 423 LILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGL 482

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
               +   A   W  + + G++P   +   ++ GL  +G ++D     E       +   
Sbjct: 483 CRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDA 542

Query: 431 VTMHKLKKAFYNESRSM 447
            + + L +   N +R+M
Sbjct: 543 ASFNALIEGMSNANRAM 559


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 131/300 (43%), Gaps = 43/300 (14%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           AWN+++    K GR  + +  +  +   G + +  T+ ++ D +C +G   EA+  F V+
Sbjct: 177 AWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVL 236

Query: 174 SM--HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKE 230
           S   H  E +VV  N+L+S +C+  ++   A E + ++K + +  D  ++  L++G  K+
Sbjct: 237 SSRDHHAEPNVVTFNALISGLCKA-DRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQ 295

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G   E ++ F EM+ R   NP  V+ Y T +    +   + +A + +R            
Sbjct: 296 GRTSEVSRVFEEML-REGCNPS-VVTYTTLVHAHCKAGSLQDAQQVIR------------ 341

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
                                    MV  G  PD  TY ++ E L +N +V    +FF +
Sbjct: 342 ------------------------SMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEK 377

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           +++    P  +  +  +     A   + A++ +  +L+  + P  A+   L+  L   GR
Sbjct: 378 ILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGR 437



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 125/298 (41%), Gaps = 12/298 (4%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ +I   YC   + D+A    +  S      DV+A+ S+    C+ +         L+ 
Sbjct: 108 TYTAIIKCYCKMDRLDQARQLLEESSC--CSSDVIAITSVARGFCKAQRVDEAYQLLLDM 165

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           V KK   PD  ++ +++ G+ K G V EA +    +V      P  V  Y T +    + 
Sbjct: 166 VEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVS-MGCVPNAV-TYTTLIDGFCKS 223

Query: 268 KQVDEALKFLRVM--KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
             + EAL+  +V+  +  +  P +  F+  +  L K +   HA +L   M        D+
Sbjct: 224 GNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKA-RDLRADT 282

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
            TY  + + L K  R  EV + F EM++    P+ +   T +     A   + A ++   
Sbjct: 283 FTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRS 342

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKA 439
           ++  GI P   +   LL GL   G++     F E++L  R     ++Y   +    KA
Sbjct: 343 MVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKA 400



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/335 (19%), Positives = 141/335 (42%), Gaps = 11/335 (3%)

Query: 98  AVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA--SI 153
           A++ F    +   L P A  +  ++    K  R +Q   A ++++E    S    A  S+
Sbjct: 89  ALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQ---ARQLLEESSCCSSDVIAITSV 145

Query: 154 FDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
              +C A + DEA  +  D++     + D+VA N ++   C+   +   A E L  +  +
Sbjct: 146 ARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKA-GRVREAYEMLETLVSM 204

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
              P+  ++  L++G+ K GN+ EA + F  +  R      +V+ +   +  L +  +++
Sbjct: 205 GCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLE 264

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
            A + ++ MK  +       ++  +D L K   ++   ++++ M+   G  P  +TY  +
Sbjct: 265 HAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEML-REGCNPSVVTYTTL 323

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
                K   + + ++    M+     P        +  L +  +   A E +  IL    
Sbjct: 324 VHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERC 383

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            P     + L+ G      + +  ++  EML+RR+
Sbjct: 384 PPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRRL 418



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 134/334 (40%), Gaps = 51/334 (15%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF+ +    C AG+  EAV  ++ M       ++  +N LL+++C Q  +  +A+     
Sbjct: 5   TFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLC-QAGKMDQAMAIFRG 63

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           ++    P   +  IL+ G+ +   +++A + F EM + F   PE    Y   +    +  
Sbjct: 64  IQ--CSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEAT-TYTAIIKCYCKMD 120

Query: 269 QVDEALKFLR--------------VMKGENCFPTLKFFSNALDILVKLNDSTHA---VQL 311
           ++D+A + L               V +G   F   +    A  +L+ + +   A   +  
Sbjct: 121 RLDQARQLLEESSCCSSDVIAITSVARG---FCKAQRVDEAYQLLLDMVEKKSAKPDIVA 177

Query: 312 WDIM-------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           W+++                   +V  G  P+++TY  + +   K+  + E  + F  + 
Sbjct: 178 WNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLS 237

Query: 353 KNEWQPTPLNCAT---AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
             +    P N  T    I+ L  AD  E A E+   +    +     +   L+ GL   G
Sbjct: 238 SRDHHAEP-NVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQG 296

Query: 410 RLSDVRRFAEEML----NRRILIYEVTMHKLKKA 439
           R S+V R  EEML    N  ++ Y   +H   KA
Sbjct: 297 RTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKA 330


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 132/306 (43%), Gaps = 4/306 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +F ++    C +G  +E      VM   GV  DV   ++L++ +C++      +L F   
Sbjct: 285 SFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEM 344

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             + + P+G +F  L++G  K G V+ A K F  M+ +    P+ ++ Y   +  L +  
Sbjct: 345 CGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQ-GVRPD-LVTYNALINGLCKVG 402

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            + EA + +  M      P    F+  +D   K  D   A+++    MV  G   D + +
Sbjct: 403 DLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKR-RMVEEGIELDDVAF 461

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
             +   L +  RVH+  +   +M+   ++P        I       + ++  ++   +  
Sbjct: 462 TALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQS 521

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 448
           +G +P   + N L+ GL   G++ + +   + MLN  +   ++T + L         S+ 
Sbjct: 522 DGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGSSVD 581

Query: 449 -DIFDS 453
            DIF+S
Sbjct: 582 VDIFNS 587



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 116/279 (41%), Gaps = 48/279 (17%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +   +C AG    A + FD +   G+   VV+ N+L+S  C+     S  +E   R+
Sbjct: 251 FNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCK-----SGDVEEGFRL 305

Query: 210 KKIVD-----PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           K +++     PD  +F+ L+ G  KEG ++E +  F EM  R    P  V  + T +   
Sbjct: 306 KGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGR-GLVPNGV-TFTTLIDGQ 363

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            +G +VD ALK  +                                    MM+  G  PD
Sbjct: 364 CKGGKVDLALKNFQ------------------------------------MMLAQGVRPD 387

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TYN +   L K   + E  +  +EM  +  +P  +   T I       + E A+EI  
Sbjct: 388 LVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKR 447

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
            ++E GI   + +   L+ GL   GR+ D  R   +ML+
Sbjct: 448 RMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLS 486



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 130/315 (41%), Gaps = 4/315 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG R +  ++N ++    K+G  E+ +    VM+ +GV   + TF+++ +  C  G+ DE
Sbjct: 277 RGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDE 336

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
             + FD M   G+  + V   +L+   C+          F   + + V PD  ++  L+ 
Sbjct: 337 GSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALIN 396

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K G+++EA +   EM       P+ +  + T +    +   ++ AL+  R M  E  
Sbjct: 397 GLCKVGDLKEARRLVNEMTAS-GLKPDKI-TFTTLIDGCCKDGDMESALEIKRRMVEEGI 454

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
                 F+  +  L +     H        M+  G  PD  TY M+ +C  K   V    
Sbjct: 455 ELDDVAFTALISGLCR-EGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGF 513

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           K   EM  +   P  +     +  L    + + A  + + +L  G+ P + + N LL G 
Sbjct: 514 KLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGH 573

Query: 406 RNLGRLSDVRRFAEE 420
              G   DV  F  E
Sbjct: 574 SKHGSSVDVDIFNSE 588



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 112/252 (44%), Gaps = 6/252 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F    GRG   +   +  ++D   K G+ +      ++M   GV   L T+ ++ +  C 
Sbjct: 341 FDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCK 400

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
            G   EA    + M+  G++ D +   +L+   C+  +  S ALE   R V++ ++ D  
Sbjct: 401 VGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMES-ALEIKRRMVEEGIELDDV 459

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +F  L+ G  +EG V +A +   +M+    + P+    Y   +    +   V    K L+
Sbjct: 460 AFTALISGLCREGRVHDAGRMLTDMLSA-GFKPDDP-TYTMVIDCFCKKGDVKMGFKLLK 517

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M+ +   P +  ++  ++ L K     +A  L D M+   G  P+ +TYN++ +   K+
Sbjct: 518 EMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNV-GVAPNDITYNILLDGHSKH 576

Query: 339 KRVHEVEKFFHE 350
               +V+ F  E
Sbjct: 577 GSSVDVDIFNSE 588


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 131/336 (38%), Gaps = 43/336 (12%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            F  + +  C   + DEA    +     G E D V  N  +  +C+ E +   A + L +
Sbjct: 9   AFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAE-RVDDAFQLLKK 67

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + +K   P   ++  L++G  K G ++EA     +MVE+   N   +  Y   +  L + 
Sbjct: 68  MDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEK--GNSPTLKTYTVVIDGLSKA 125

Query: 268 KQVDEALKFLRVMKGENC---------------------------------------FPT 288
            +V+EA +    M G  C                                        P 
Sbjct: 126 GRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPD 185

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  +++ +D L K      A Q++D   V  G  PD++TY  I + L K  RV E  + F
Sbjct: 186 VVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERF 245

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
           HEM    ++P  +  A  I   + A     A  ++  +L++G +    + N +L GL   
Sbjct: 246 HEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKA 305

Query: 409 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           GR+++       M  R  +   VT   L   F +E 
Sbjct: 306 GRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEG 341



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 140/317 (44%), Gaps = 9/317 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  +VD L K GR ++    +  M E G   +L T+  + D    AG+ +EA   F  M 
Sbjct: 80  YTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDML 139

Query: 175 MHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKK---IVDPDGDSFAILLEGWEKE 230
            +G   D     +L+  +C+    + + AL      +K      PD  ++  L++G  K 
Sbjct: 140 GNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKA 199

Query: 231 GNVEEANKTFG-EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           G + EA + F  E VER  + P+ V  Y + +  L +  +V+E  +    M+     P  
Sbjct: 200 GRILEARQVFDDEAVER-GFIPDAV-TYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDA 257

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             ++  +D  +K      A +++   M+  G    ++TYN+I + L K  RV E    F 
Sbjct: 258 VTYAALIDGFMKAKMIPKAHRVYR-QMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFL 316

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
            M +     T +  +  +           A+E++  +L+ G  P   S N ++ GL   G
Sbjct: 317 AMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAG 376

Query: 410 RLSDVRRFAEEMLNRRI 426
           +L+    + E++L RR+
Sbjct: 377 KLAKAYFYFEKLLQRRL 393



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 149/370 (40%), Gaps = 53/370 (14%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMW------NAVRVMKEDGVLSLPTFASIF 154
           F    G G R   + +  ++  L K+G+ E+ +      NA R      V  + T+ S+ 
Sbjct: 135 FVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANA-RKHHATAVPDVVTYTSLI 193

Query: 155 DSYCGAGKYDEAVMSFDVMSM-HGVEQDVVAVNSLLSAIC---RQENQTSRALEFLNRVK 210
           D  C AG+  EA   FD  ++  G   D V   S++  +C   R E    R  E  NR  
Sbjct: 194 DGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRG- 252

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
              +PD  ++A L++G+ K   + +A++ + +M++         + Y   L  L +  +V
Sbjct: 253 --YEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQ--SGTVVSTVTYNIILDGLCKAGRV 308

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
            EA      M+   C  T+  +S  +D      + + AV+L+   M+  G  P+ ++YN+
Sbjct: 309 AEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFR-RMLDRGCEPNLVSYNI 367

Query: 331 I----------------FECLIKNKRVHEVEKF--------------------FHEMIKN 354
           I                FE L++ +   +V  F                    F  M+  
Sbjct: 368 IIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQ 427

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
              P   + +  +  +  A   E+A+EI+  ++  G+ P     N L+  L   GR+ + 
Sbjct: 428 GTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEA 487

Query: 415 RRFAEEMLNR 424
                E+  R
Sbjct: 488 LEVFRELERR 497



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 117/250 (46%), Gaps = 10/250 (4%)

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
           D+VA   +++ +CR E +   A   L R V+   +PD  ++ + ++G  K   V++A + 
Sbjct: 6   DMVAFTVVINGLCR-EKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
             +M E+ +  P  V  Y   +  L++  ++DEA+  L  M  +   PTLK ++  +D L
Sbjct: 65  LKKMDEK-KCLPTTV-TYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGL 122

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            K      A +++ + M+ +G  PD+  Y  + + L K+ +  E    + E    +   T
Sbjct: 123 SKAGRVEEARRIF-VDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHAT 181

Query: 360 PLNCATAITMLLD----ADEPEIAIEIW-NYILENGILPLEASANELLVGLRNLGRLSDV 414
            +      T L+D    A     A +++ +  +E G +P   +   ++ GL  LGR+ + 
Sbjct: 182 AVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEG 241

Query: 415 RRFAEEMLNR 424
                EM NR
Sbjct: 242 CERFHEMRNR 251



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 111/250 (44%), Gaps = 7/250 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           G  +S   +N+++D L K GR  + +     M+E G V ++ T++++ D +C  G    A
Sbjct: 287 GTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAA 346

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           V  F  M   G E ++V+ N ++  +CR          F   +++ + PD  +F   L G
Sbjct: 347 VELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHG 406

Query: 227 -WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
             ++   V +  + F  MV   +    ++ +Y   +  + R   ++ AL+  R M     
Sbjct: 407 LCQRLDTVSDGVELFESMVS--QGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGV 464

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P +  F+  +  L        A++++  +     + PD+ +Y  + + L + +R+ E  
Sbjct: 465 APDVVVFNTLIRWLCIAGRVDEALEVFRELE--RRSAPDAWSYWSLLDGLSRCERMEEAR 522

Query: 346 KF-FHEMIKN 354
              FH  ++ 
Sbjct: 523 LLSFHMKLQG 532



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 5/141 (3%)

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           PD + + ++   L + KR+ E        ++   +P  +     I  L  A+  + A ++
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKK 438
              + E   LP   +   L+ GL   GRL +     E+M+ +     +  Y V +  L K
Sbjct: 65  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSK 124

Query: 439 AFYNESRSMRDIFDSLERRCK 459
           A   E  + R   D L   C+
Sbjct: 125 AGRVEE-ARRIFVDMLGNGCR 144


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 126/279 (45%), Gaps = 6/279 (2%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S  TF ++    C  GK  EA+  FD M+  G + DV+   +L++ +C+    T     F
Sbjct: 79  STATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLF 138

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
            + + K + P+  +++ L+ G    G+ +EA + F  M+ R +  P+  L + T +  L 
Sbjct: 139 SDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHR-KIMPDQ-LTFNTLVDALC 196

Query: 266 RGKQV---DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
           +   +   D+A+     M  +   P    ++  +  L  +     A+ L+  M+V+ G  
Sbjct: 197 KEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVY-GQI 255

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
           PD +TY ++F+ L KN R+ E       +      P     +  +  +  A E E A ++
Sbjct: 256 PDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDL 315

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           ++ +   G+ P   +   ++ GL   G L++  +   EM
Sbjct: 316 FSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEM 354


>gi|242074484|ref|XP_002447178.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
 gi|241938361|gb|EES11506.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
          Length = 643

 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 118/247 (47%), Gaps = 4/247 (1%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGR-FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYD 164
           G G+ +  +A+ L++  L K+G+ FE +    R++K     +   + ++ DS    G+  
Sbjct: 309 GMGKEIPQHAYVLVIGALSKDGKPFEALAVFERMLKRGCPANAAMYTALIDSMGKLGREK 368

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA+  F+ M   G+E D V    +++ +CR  N       F + V+K V  +   +  L+
Sbjct: 369 EAMALFERMKASGIELDAVTYGVIVNCLCRFGNMEEALSCFRSCVEKGVAVNAIFYTSLI 428

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G+ K G V++A + F EM+ +  + P+    Y   +  L++  + D A  F   M+ + 
Sbjct: 429 DGFGKTGMVDQAKELFEEMIAK-GFVPDSY-CYNVLIDALVKAGRTDIACAFYERMEDDG 486

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
           C  T+  ++  +D L K + +  A++ WD  M+  G  P +  + ++   L  + +    
Sbjct: 487 CDQTVYTYTILIDGLFKEHKNEEALKFWD-SMIDKGITPTAAAFRVLANGLCLSGKFSRA 545

Query: 345 EKFFHEM 351
            +   E+
Sbjct: 546 WRILDEL 552



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 137/332 (41%), Gaps = 11/332 (3%)

Query: 97  SAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP--TFAS 152
           +A++ F       R+ P   ++N+++    + GR +   + +  ++E   L+    T+ +
Sbjct: 225 TAINVFDAMSTEDRVRPDVVSYNILIKGYCRAGRTQDGMSRLADLREQAELAPDKVTYLT 284

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA-VNSLLSAICRQENQTSRALEFLNR-VK 210
           +   +   G + + +  F  M   G+ +++      L+     ++ +   AL    R +K
Sbjct: 285 LMQRHYSEGTFPQCIALFQEMEERGMGKEIPQHAYVLVIGALSKDGKPFEALAVFERMLK 344

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQ 269
           +    +   +  L++   K G  +EA   F  M     E +    + Y   +  L R   
Sbjct: 345 RGCPANAAMYTALIDSMGKLGREKEAMALFERMKASGIELD---AVTYGVIVNCLCRFGN 401

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           ++EAL   R    +       F+++ +D   K      A +L++  M+  G  PDS  YN
Sbjct: 402 MEEALSCFRSCVEKGVAVNAIFYTSLIDGFGKTGMVDQAKELFE-EMIAKGFVPDSYCYN 460

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
           ++ + L+K  R      F+  M  +    T       I  L    + E A++ W+ +++ 
Sbjct: 461 VLIDALVKAGRTDIACAFYERMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDSMIDK 520

Query: 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           GI P  A+   L  GL   G+ S   R  +E+
Sbjct: 521 GITPTAAAFRVLANGLCLSGKFSRAWRILDEL 552



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 130/342 (38%), Gaps = 51/342 (14%)

Query: 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAV 167
           + LSP +   ++  L   G  E++  A + M+  GV  S  T+  + D    AG  D A+
Sbjct: 168 RHLSPASSASLIRSLAAFGLSEELLWAWQAMRLAGVEPSRLTYNCLLDGLVNAGLLDTAI 227

Query: 168 MSFDVMSMHG-VEQDVVAVNSLLSAICRQ---ENQTSRALEFLNRVKKIVDPDGDSFAIL 223
             FD MS    V  DVV+ N L+   CR    ++  SR  +   R +  + PD  ++  L
Sbjct: 228 NVFDAMSTEDRVRPDVVSYNILIKGYCRAGRTQDGMSRLADL--REQAELAPDKVTYLTL 285

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           ++    EG   +    F EM ER      P+H  AY   +  L +  +  EAL     M 
Sbjct: 286 MQRHYSEGTFPQCIALFQEMEERGMGKEIPQH--AYVLVIGALSKDGKPFEALAVFERML 343

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
              C      ++  +D + KL     A+ L++ M    G   D++TY +I  CL +   +
Sbjct: 344 KRGCPANAAMYTALIDSMGKLGREKEAMALFERMKA-SGIELDAVTYGVIVNCLCRFGNM 402

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E    F   +                      E  +A+    Y               L
Sbjct: 403 EEALSCFRSCV----------------------EKGVAVNAIFY-------------TSL 427

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRIL----IYEVTMHKLKKA 439
           + G    G +   +   EEM+ +  +     Y V +  L KA
Sbjct: 428 IDGFGKTGMVDQAKELFEEMIAKGFVPDSYCYNVLIDALVKA 469


>gi|357503117|ref|XP_003621847.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496862|gb|AES78065.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 457

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 141/317 (44%), Gaps = 11/317 (3%)

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDE 165
           RLS    N+ +  + K+    Q+  A  V+ +   L L     T+ ++ D YC     D 
Sbjct: 4   RLSTKFMNITISTMCKS---NQIAKAETVLIDGIKLGLNPDIITYNTLIDGYCRFVGIDA 60

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A    + M   G+  DVV+ NSL S   R+     ++L+  +  ++  + PD  S+ IL+
Sbjct: 61  AYNILNRMKEAGINPDVVSYNSLSSGAVRK-CLLQKSLDLFDEMLQSGIRPDVWSYNILM 119

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
             + + G  EEAN  F ++ ER E  P  + +Y   +  L +   V+ AL   R ++   
Sbjct: 120 HCYFRLGKPEEANGVFRDIFERGEIYPS-MASYNVMINGLCKNGYVNNALMLFRNLRRRG 178

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P +  ++  ++ L K      A ++ +    F G  P+++TY  + +C  +  R+ + 
Sbjct: 179 FVPEVLTYNAMINGLCKARRLADARRVLNEFCDF-GFEPNAITYTTVMKCCFRCGRLEQG 237

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            +   EM +  +        T +  L+     E A EI   ++ NG++P  AS N ++  
Sbjct: 238 LEILSEMRRKGFTFDGFAYCTVVAALVKTGRIEEADEIAEKMMSNGLVPDLASYNTMINL 297

Query: 405 LRNLGRLSDVRRFAEEM 421
               GR  +  R  +E+
Sbjct: 298 FCRQGRFDEALRLVDEI 314



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 12/187 (6%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G     +A+  +V  L K GR E+       M  +G++  L ++ ++ + +C  G++DE
Sbjct: 247 KGFTFDGFAYCTVVAALVKTGRIEEADEIAEKMMSNGLVPDLASYNTMINLFCRQGRFDE 306

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFAIL 223
           A+   D +   G++ D      ++  +C+  N     + L+++N +      +  +F  +
Sbjct: 307 ALRLVDEIEKQGMKCDQYTHTIIIHGLCKDGNFEGAEKHLDYMNTLG--FGFNLVAFNSI 364

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           L+   K G++++A K F  M        +    Y + L  L R K+   A K L V   E
Sbjct: 365 LDCLGKAGDIDKAVKVFDSM------EVKDSFTYTSLLHNLCRAKKFRIASKLL-VASIE 417

Query: 284 NCFPTLK 290
           + F  L+
Sbjct: 418 DGFQILR 424



 Score = 39.3 bits (90), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 55/281 (19%), Positives = 112/281 (39%), Gaps = 6/281 (2%)

Query: 161 GKYDEAVMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           GK +EA   F D+     +   + + N +++ +C+     +  + F N  ++   P+  +
Sbjct: 126 GKPEEANGVFRDIFERGEIYPSMASYNVMINGLCKNGYVNNALMLFRNLRRRGFVPEVLT 185

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           +  ++ G  K   + +A +   E  + F + P + + Y T +    R  ++++ L+ L  
Sbjct: 186 YNAMINGLCKARRLADARRVLNEFCD-FGFEP-NAITYTTVMKCCFRCGRLEQGLEILSE 243

Query: 280 MKGENCFPTLKF-FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
           M+ +  F    F +   +  LVK      A ++ + MM  +G  PD  +YN +     + 
Sbjct: 244 MRRKG-FTFDGFAYCTVVAALVKTGRIEEADEIAEKMMS-NGLVPDLASYNTMINLFCRQ 301

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
            R  E  +   E+ K   +         I  L      E A +  +Y+   G      + 
Sbjct: 302 GRFDEALRLVDEIEKQGMKCDQYTHTIIIHGLCKDGNFEGAEKHLDYMNTLGFGFNLVAF 361

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
           N +L  L   G +    +  + M  +    Y   +H L +A
Sbjct: 362 NSILDCLGKAGDIDKAVKVFDSMEVKDSFTYTSLLHNLCRA 402


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 138/297 (46%), Gaps = 5/297 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     KYD  +     M + G+  D+   N +++  C    Q S AL  
Sbjct: 84  SIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFC-CCFQVSLALSV 142

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  +   L+ G+ +   V +A     +MVE   + P+ ++AY   + +L
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE-IGYRPD-IVAYNAIIDSL 200

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            + ++V++AL F + +  +   P +  ++  ++ L        A +L   M +     P+
Sbjct: 201 CKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDM-IKRKITPN 259

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TY+ + +  +KN +V E ++ F EM++    P  +  ++ I  L   D  + A ++++
Sbjct: 260 VITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFD 319

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
            ++  G  P   S N L+ G     R+ D  +   +M  R ++   VT + L + F+
Sbjct: 320 LMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFF 376



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 128/274 (46%), Gaps = 5/274 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T  S+ + +C   +  +AV   D M   G   D+VA N+++ ++C+   + + AL+F   
Sbjct: 157 TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTR-RVNDALDFFKE 215

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + +K + P+  ++  L+ G    G   +A +   +M++R +  P +V+ Y   L   ++ 
Sbjct: 216 IGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKR-KITP-NVITYSALLDAFVKN 273

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +V EA +    M   +  P +  +S+ ++ L   +    A Q++D +MV  G FPD ++
Sbjct: 274 GKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFD-LMVSKGCFPDVVS 332

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +     K KRV +  K F +M +       +   T I       + + A E ++ + 
Sbjct: 333 YNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMD 392

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
             G+ P   + N LL GL + G L       E+M
Sbjct: 393 SFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDM 426



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 136/315 (43%), Gaps = 4/315 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R    A+N ++D L K  R     +  + +   G+  ++ T+ ++ +  C +G++++A
Sbjct: 185 GYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDA 244

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
                 M    +  +V+  ++LL A  +          F   V+  +DPD  +++ L+ G
Sbjct: 245 ARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLING 304

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
                 ++EAN+ F  MV +  + P+ V++Y T +    + K+V++ +K  R M      
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCF-PD-VVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLV 362

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
                ++  +    ++ D   A + +  M  F G  PD  TYN++   L  N  + +   
Sbjct: 363 NNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSF-GVSPDIWTYNILLGGLCDNGLLEKALV 421

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            F +M K+E     +   T I  +    + E A  ++  +   G+ P   +   ++ GL 
Sbjct: 422 IFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLC 481

Query: 407 NLGRLSDVRRFAEEM 421
             G   +V     +M
Sbjct: 482 TKGLQHEVEALYTKM 496



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 86/231 (37%), Gaps = 38/231 (16%)

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
           T +R  ++ +A+   R M     FP++  F+  L  +VK+      + L   M V  G  
Sbjct: 59  TRLRDIKLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVL-GIR 117

Query: 323 PDSLTYNMIFEC-----------------------------------LIKNKRVHEVEKF 347
            D  T+N++  C                                     +  RV +    
Sbjct: 118 NDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
             +M++  ++P  +     I  L        A++ +  I   GI P   +   L+ GL N
Sbjct: 178 VDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCN 237

Query: 408 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLER 456
            GR +D  R   +M+ R+I    +T   L  AF    + +  ++IF+ + R
Sbjct: 238 SGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVR 288


>gi|15225055|ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
 gi|75100007|sp|O80958.1|PP194_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g39230, mitochondrial; AltName: Full=Protein LATERAL
           ORGAN JUNCTION; Flags: Precursor
 gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis thaliana]
 gi|330254554|gb|AEC09648.1| lateral organ junction protein [Arabidopsis thaliana]
          Length = 867

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 155/354 (43%), Gaps = 42/354 (11%)

Query: 77  IIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           I P+  LVH ++Q  L  +SP +A++ F                       N  FE  W 
Sbjct: 411 IAPSSVLVHTMIQGCLKAESPEAALEIF-----------------------NDSFES-WI 446

Query: 135 AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
           A   M             IF  +C  GK D A     +M   G+E +VV  N+++ A CR
Sbjct: 447 AHGFMCN----------KIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCR 496

Query: 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM-VERFEWNPEH 253
            +N       F   ++K ++P+  +++IL++G+ K  + + A     +M    FE N   
Sbjct: 497 MKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANE-- 554

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-TLKFFSNALDILVKLNDSTHAVQLW 312
            + Y T +  L +  Q  +A + L+ +  E  +  +   +++ +D  VK+ D+  AV+ +
Sbjct: 555 -VIYNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETY 613

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
              M  +G  P+ +T+  +     K+ R+    +  HEM   E +         I     
Sbjct: 614 R-EMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCK 672

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            ++ + A  +++ + E G++P  +  N L+ G RNLG++       ++M+N  I
Sbjct: 673 KNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGI 726



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 132/286 (46%), Gaps = 5/286 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEA 166
           G  L+P A+N +++   +N R +   +   +M +  V+  +P   ++  S   +   DEA
Sbjct: 164 GFELTPRAFNYLLNAYIRNKRMDYAVDCFGLMVDRKVVPFVPYVNNVLSSLVRSNLIDEA 223

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLE 225
              ++ M + GV  D V    L+ A  R E +   A++   RV  +  +PDG  F++ ++
Sbjct: 224 KEIYNKMVLIGVAGDNVTTQLLMRASLR-ERKPEEAVKIFRRVMSRGAEPDGLLFSLAVQ 282

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K  ++  A     EM  +    P     Y + ++  ++   ++EA++ +  M G   
Sbjct: 283 AACKTPDLVMALDLLREMRGKLGV-PASQETYTSVIVAFVKEGNMEEAVRVMDEMVGFGI 341

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
             ++   ++ ++   K N+   A+ L++  M   G  PD + ++++ E   KN  + +  
Sbjct: 342 PMSVIAATSLVNGYCKGNELGKALDLFN-RMEEEGLAPDKVMFSVMVEWFCKNMEMEKAI 400

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
           +F+  M      P+ +   T I   L A+ PE A+EI+N   E+ I
Sbjct: 401 EFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWI 446



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 143/339 (42%), Gaps = 17/339 (5%)

Query: 95  PSSAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----T 149
           P  AV  FR    RG       ++L V    K        + +R M+  G L +P    T
Sbjct: 255 PEEAVKIFRRVMSRGAEPDGLLFSLAVQAACKTPDLVMALDLLREMR--GKLGVPASQET 312

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + S+  ++   G  +EAV   D M   G+   V+A  SL++  C+  N+  +AL+  NR+
Sbjct: 313 YTSVIVAFVKEGNMEEAVRVMDEMVGFGIPMSVIAATSLVNGYCKG-NELGKALDLFNRM 371

Query: 210 KK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           ++  + PD   F++++E + K   +E+A + +  M +     P  VL + T +   ++ +
Sbjct: 372 EEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMRM-KSVRIAPSSVLVH-TMIQGCLKAE 429

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
             + AL+          +    F  N + +L        A   +  MM   G  P+ + Y
Sbjct: 430 SPEAALEIFN--DSFESWIAHGFMCNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFY 487

Query: 329 N--MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           N  M+  C +KN  +      F EM++   +P     +  I       + + A ++ N +
Sbjct: 488 NNMMLAHCRMKNMDL--ARSIFSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQM 545

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
             +     E   N ++ GL  +G+ S  +   + ++  +
Sbjct: 546 NASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEK 584


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 150/383 (39%), Gaps = 43/383 (11%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P LV  VL+   D    A++FF WA R  R S  P  +  ++DVL K    +     +R+
Sbjct: 163 PSLVCAVLRSQADE-RVALNFFYWADRQWRYSHHPLVYYTLLDVLSKTKLCQGARRVLRL 221

Query: 139 MKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ----------------- 180
           M   G+ LS   F  +  SY  AGK   A+    +M   GVE                  
Sbjct: 222 MTRRGIELSPEAFGCVMVSYSRAGKLRNALRVLTLMQKAGVEPNLSICNTTIYVLVKGCK 281

Query: 181 ------------------DVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFA 221
                             D+V  NSL+   C   N+   ALE +  +  K   PD  S+ 
Sbjct: 282 LEKALRFLERMQVTGIKPDIVTYNSLIKGYC-DLNRIEDALELIAGLPSKGCPPDKVSYY 340

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            ++    KE  +E+      +MV+     P+ V  Y T +  L +    D+AL FL+  +
Sbjct: 341 TVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQV-TYNTLIHMLSKHGHADDALAFLKEAE 399

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            +        +S  +    +      A  L  I M      PD +TY  I +   +  R+
Sbjct: 400 DKGFHIDKVGYSAIVHSFCQKGRMDEAKSLV-IDMYSRSCNPDVVTYTAIVDGFCRLGRI 458

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E +K   +M K+  +P  ++    +  L  + +   A E+ N   E+   P   +   +
Sbjct: 459 DEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVV 518

Query: 402 LVGLRNLGRLSDVRRFAEEMLNR 424
           + G R  G+LS+      EM+ +
Sbjct: 519 MHGFRREGKLSEACDLTREMVEK 541



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 148/329 (44%), Gaps = 11/329 (3%)

Query: 98  AVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFD 155
           A+ F + A  +G  +    ++ +V    + GR ++  + V  M        + T+ +I D
Sbjct: 391 ALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVD 450

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-D 214
            +C  G+ DEA      M  HG + + V+  +LL+ +C    ++  A E +N  ++    
Sbjct: 451 GFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLC-HSGKSLEAREMINVSEEHWWT 509

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEA 273
           P+  ++ +++ G+ +EG + EA     EMVE+ F   P  +      + +L + ++V EA
Sbjct: 510 PNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEI---NLLIQSLCQNQKVVEA 566

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
            K+L     + C   +  F+  +    ++ D   A+ + + M +     PD++TY  +F+
Sbjct: 567 KKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMYL-SNKHPDAVTYTALFD 625

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L K  R+ E  +   +M+     PTP+   + I         +  + + + +++    P
Sbjct: 626 ALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVDDMLNLLDRMVKRK--P 683

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEML 422
                N ++  L + G L +  +   ++L
Sbjct: 684 FRTIYNHVIEKLCDFGNLEEAEKLLGKVL 712



 Score = 39.3 bits (90), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 5/133 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  + D LGK GR ++    +  M   G+   P TF S+   YC  G+ D+ +   D M 
Sbjct: 620 YTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVDDMLNLLDRMV 679

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP-DGDSFAILLEGWEKEGNV 233
                + +   N ++  +C   N    A + L +V +     D ++  +L+E   K+G  
Sbjct: 680 KRKPFRTI--YNHVIEKLCDFGN-LEEAEKLLGKVLRTASKLDANTCHVLMESCLKKGVA 736

Query: 234 EEANKTFGEMVER 246
             A K   +M  R
Sbjct: 737 LSAYKVACQMFRR 749


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 133/315 (42%), Gaps = 19/315 (6%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +++ +    C  G+ +EA    D M   G +        L+ A+C       +A    + 
Sbjct: 268 SYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALC-DRGLIDKAFNLFDE 326

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            + +   P+  ++ +L++G  ++G +EEAN    +MV+   +    V+ Y   +    + 
Sbjct: 327 MIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIF--PSVITYNALINGYCKD 384

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +V  A + L VM+   C P ++ F+  ++ L ++     AV L    M+ +G  PD ++
Sbjct: 385 GRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLK-RMLDNGLSPDIVS 443

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN++ + L +   ++   K    M   + +P  L     I       + ++A      +L
Sbjct: 444 YNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLML 503

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
             GI   E +   L+ G+ N+G+  D     E ++  R+L    T H           S+
Sbjct: 504 RKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRML---TTPH-----------SL 549

Query: 448 RDIFDSLERRCKTSQ 462
             I D L + CK  +
Sbjct: 550 NVILDMLSKGCKLKE 564



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/348 (20%), Positives = 150/348 (43%), Gaps = 8/348 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F     RG + + + + +++D L ++G+ E+     R M +DG+  S+ T+ ++ + YC 
Sbjct: 324 FDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCK 383

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
            G+   A     VM     + +V   N L+  +CR   +  +A+  L R +   + PD  
Sbjct: 384 DGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRV-GKPYKAVHLLKRMLDNGLSPDIV 442

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+ +L++G  +EG++  A K    M   F+  P+  L +   +    +  + D A  FL 
Sbjct: 443 SYNVLIDGLCREGHMNVAYKLLTSM-NSFDLEPD-CLTFTAIINAFCKQGKADVASAFLG 500

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG-AFPDSLTYNMIFECLIK 337
           +M  +         +  +D +  +  +  A+ + + ++       P SL  N+I + L K
Sbjct: 501 LMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSL--NVILDMLSK 558

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             ++ E      ++ K    P+ +   T +  L+ + +   +  +   +  +G LP    
Sbjct: 559 GCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYP 618

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
              ++ GL   GR+ +  +    M +  +    VT   + K + N  +
Sbjct: 619 YTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGK 666



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 118/292 (40%), Gaps = 7/292 (2%)

Query: 133 WNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
           +   R M+ DG V+ +  + +I ++ C  G  + A M    +   G   D   V SLL  
Sbjct: 180 YVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLG 239

Query: 192 ICRQEN--QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249
            CR  N     +  + ++R +    P+  S++IL+ G  + G +EEA     +M E+   
Sbjct: 240 FCRGLNLRDALKVFDLMSR-EGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEK-GC 297

Query: 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
            P     Y   +  L     +D+A      M    C P +  ++  +D L +      A 
Sbjct: 298 QPS-TRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEAN 356

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
            +    MV  G FP  +TYN +     K+ RV    +    M K   +P        +  
Sbjct: 357 GVCR-KMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEG 415

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           L    +P  A+ +   +L+NG+ P   S N L+ GL   G ++   +    M
Sbjct: 416 LCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSM 467


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 134/296 (45%), Gaps = 17/296 (5%)

Query: 112 SPYAW--NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVM 168
           SP  W  NL+V+ L K G        +      G +  + TF ++ D YC     D+A+ 
Sbjct: 423 SPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIE 482

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
             D M  HG+  DV+  N+LL+ +C+     +    F   ++K   P+  ++ IL+E + 
Sbjct: 483 ILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFC 542

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K+  V EA + F EM  R    P+ ++   T +  L    ++D+A +    ++ E  F  
Sbjct: 543 KDRKVSEAMELFKEMKTR-GLTPD-IVTLCTLICGLCSNGELDKAYELFVTIEKEYKFS- 599

Query: 289 LKFFSNAL-DILV-----KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
              +S A+ +I++     KLN S  A +L+  M     A PD+ TY ++ +   K   + 
Sbjct: 600 ---YSTAIFNIMINAFCXKLNVSM-AEKLFHKMGGSDCA-PDNYTYRVMIDSYCKTGNID 654

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
               F  E I     P+   C   +  L        A+ I N +++NGI+P E ++
Sbjct: 655 LAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEEVNS 710



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 132/329 (40%), Gaps = 8/329 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++ VL K G  ++      +VMK     +L TF       C  G  DEA    + +
Sbjct: 218 TFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESI 277

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  DV++ N+L+   C+              V   V+P+  ++  ++ G+ K G +
Sbjct: 278 VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMM 337

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A+K   + +  F+        Y + +  L     ++ A+        +    ++  ++
Sbjct: 338 QNADKILRDAM--FKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYN 395

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +  L K      A+QL   MM  HG  PD  TYN++   L K   + +     ++ I 
Sbjct: 396 TLVKGLSKQGLVLQALQLMKDMME-HGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIA 454

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               P      T I         + AIEI + +L +GI P   + N LL GL    +L +
Sbjct: 455 KGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDN 514

Query: 414 VRRFAEEMLNR----RILIYEVTMHKLKK 438
           V    + ML +     I+ Y + +    K
Sbjct: 515 VVDTFKAMLEKGCTPNIITYNILIESFCK 543



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 136/332 (40%), Gaps = 43/332 (12%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S  ++N ++++L + G F Q       MK+ G+   + T      S+C  G+   A+   
Sbjct: 110 SVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLL 169

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           + M   G E + V+  +++S   ++  Q      F   +K+ + PD  +F  L+    K+
Sbjct: 170 NNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKK 229

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GNV+E+ K F ++++R      ++  +  F+  L R   +DEA + L  +  E       
Sbjct: 230 GNVQESEKLFSKVMKR--GVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSE------- 280

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
                                        G  PD ++YN +     K+ ++ E E + H+
Sbjct: 281 -----------------------------GLTPDVISYNTLICGFCKHSKLVEAECYLHK 311

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M+ +  +P      T I     A   + A +I    +  G +P E + + L+ GL N G 
Sbjct: 312 MVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGD 371

Query: 411 LSDVRR-FAEEM---LNRRILIYEVTMHKLKK 438
           ++     F E M       I++Y   +  L K
Sbjct: 372 MNRAMAVFYEAMEKGFKHSIILYNTLVKGLSK 403



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/369 (19%), Positives = 156/369 (42%), Gaps = 5/369 (1%)

Query: 57  CEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAW 116
           C+I A+   D++     C  I+    L+H VL    +   S   F +   RG   + + +
Sbjct: 196 CQIEAYHLFDEMLKQGICPDILTFNKLIH-VLCKKGNVQESEKLFSKVMKRGVCPNLFTF 254

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N+ +  L + G  ++    +  +  +G+   + ++ ++   +C   K  EA      M  
Sbjct: 255 NIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVN 314

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
            GVE +    N++++  C+     +      + + K   PD  +++ L+ G   +G++  
Sbjct: 315 SGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNR 374

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A   F E +E+       ++ Y T +  L +   V +AL+ ++ M    C P +  ++  
Sbjct: 375 AMAVFYEAMEK--GFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLV 432

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           ++ L K+   + A  + +  +   G  PD  T+N + +   K + + +  +    M+ + 
Sbjct: 433 VNGLCKMGCLSDANGILNDAIA-KGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG 491

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
             P  +   T +  L  A + +  ++ +  +LE G  P   + N L+       ++S+  
Sbjct: 492 ITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAM 551

Query: 416 RFAEEMLNR 424
              +EM  R
Sbjct: 552 ELFKEMKTR 560


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 136/313 (43%), Gaps = 3/313 (0%)

Query: 94  SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFAS 152
           S  +A  F+  A +G R +   + +++      G F  M +    MK DG+++    F  
Sbjct: 237 SKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTI 296

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           + D+Y   G  DEA++    M   G+  DV   ++L+SA+CR         +F   +   
Sbjct: 297 LIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTG 356

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V P+   +  L++G+   G++ +A +   EM+      P ++  + + + ++ +  +V +
Sbjct: 357 VQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRP-NIAFFNSIVHSICKEGRVMD 415

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A     ++K       +  F+  +D    + +   A  + D  M+  G  PD+ TYN + 
Sbjct: 416 AHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLD-AMISAGIGPDTFTYNTLV 474

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
               K+ R+ +    F EM   + +PT +     +  L  A     A ++ + ++  G  
Sbjct: 475 NGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTT 534

Query: 393 PLEASANELLVGL 405
               + N +L GL
Sbjct: 535 VSLPTYNIILKGL 547



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 137/321 (42%), Gaps = 16/321 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLS--LPTFASIFDSYCGAGKYDEAVMSF 170
           +++ +++  L  + R +Q  + +R+M KE+GV S  + T+ ++   +   GK  +A   +
Sbjct: 80  FSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLY 139

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             M   G   DVV  NS+++A+C+     +  L     V   V P+  ++  ++ G+   
Sbjct: 140 HEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTL 199

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G  EEA K F EM  R    P+ ++++ +F+ +L +  +  EA +    M  +   P + 
Sbjct: 200 GRWEEATKMFREMTGR-GLIPD-IVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIV 257

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFH-----GAFPDSLTYNMIFECLIKNKRVHEVE 345
            +       + L+         D+M  F+     G   + L + ++ +   K   + E  
Sbjct: 258 TYG------ILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAM 311

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
               EM      P     +T I+ L        A++ +N ++  G+ P     + L+ G 
Sbjct: 312 LILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGF 371

Query: 406 RNLGRLSDVRRFAEEMLNRRI 426
              G L   +    EM+N  I
Sbjct: 372 CTHGDLVKAKELVYEMMNNGI 392



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 4/219 (1%)

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
           ++  P   ++ +++ G  +    E     FG ++ R     +   A  T L  L   K+ 
Sbjct: 2   RVAPPTIFTYGVVMNGCCRARRPELGLAFFGRLL-RTGLKADKTAA-NTVLKCLCCTKRT 59

Query: 271 DEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-PDSLTY 328
           D+A+K  LR M    C P    ++  L  L   N S  A+ L  +M    G   PD +TY
Sbjct: 60  DDAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTY 119

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N +     K  ++ +    +HEM++  + P  +   + I  L  A   + A  +   +++
Sbjct: 120 NTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVD 179

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
           NG+ P + +   ++ G   LGR  +  +   EM  R ++
Sbjct: 180 NGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLI 218



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 111/278 (39%), Gaps = 19/278 (6%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +V  + K GR     +   ++K+ G  S +  F ++ D YC  G+  +A    D M 
Sbjct: 400 FNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMI 459

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+  D    N+L++   +          F     K + P   ++ I+L+G  + G   
Sbjct: 460 SAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTV 519

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A K   EM+         +  Y   L  L R    DEA+    VM  + C   +KF   
Sbjct: 520 AAQKMLHEMIGC--GTTVSLPTYNIILKGLCRNNCTDEAI----VMFQKLCTMNVKFNIT 573

Query: 295 ALDILVKLNDSTHAVQ----LWDIMMVFH--GAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
            L+ ++   +S + VQ      D+       G  P++ TY ++   L+K   V E +  F
Sbjct: 574 TLNTMI---NSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMF 630

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
             M K+   P        I  LL+  E    ++  NY+
Sbjct: 631 SSMEKSGCAPCSRLLNDTIRTLLEKGE---IVKAGNYM 665



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/369 (19%), Positives = 140/369 (37%), Gaps = 84/369 (22%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC--------------- 193
           T+  + +  C A + +  +  F  +   G++ D  A N++L  +C               
Sbjct: 10  TYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKVLLRR 69

Query: 194 --------------------RQENQTSRALEFLNRVKK---IVDPDGDSFAILLEGWEKE 230
                                 +N++ +AL+ L  + K   +  PD  ++  ++ G+ KE
Sbjct: 70  MTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKE 129

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G + +A   + EM+++  + P+ V+ + + +  L + + VD A   LR M      P   
Sbjct: 130 GKIGKACNLYHEMMQQ-GFVPD-VVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKV 187

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +++ +     L     A +++   M   G  PD +++N   + L K+ R  E  + F+ 
Sbjct: 188 TYTSMIHGYSTLGRWEEATKMFR-EMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYS 246

Query: 351 MIKNEWQPTPL--------------------------------NCATAITMLLDA----- 373
           M     +P  +                                NC    T+L+DA     
Sbjct: 247 MAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANC-LVFTILIDAYAKRG 305

Query: 374 --DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 431
             DE   A+ I + +   G+ P   + + L+  L  +GRL+D      +M+   +    V
Sbjct: 306 MMDE---AMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTV 362

Query: 432 TMHKLKKAF 440
             H L + F
Sbjct: 363 VYHSLIQGF 371


>gi|255660972|gb|ACU25655.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 376

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 164/364 (45%), Gaps = 20/364 (5%)

Query: 80  TPD-LVHEVLQLSYDSPSSAVDFFR-W---AGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           +PD +V+  +   Y   +   D F  W      G R S  ++N+M+  L  NG+ +++ +
Sbjct: 22  SPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNGKVDEVIS 80

Query: 135 AVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
              +MKE G V    T+  +   +C  G  D+++   ++    G   D  A +++++ +C
Sbjct: 81  IWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLC 140

Query: 194 RQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           ++ N   RA+  LN  +K    P+   +  L+ G       E+A + F EM      +P 
Sbjct: 141 KEAN-LDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPT 198

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            ++ Y T +  L + K   EA   ++ +  +   P +  +S  +  L   +    A+ LW
Sbjct: 199 -IITYNTLINGLCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALXLW 257

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML-- 370
           +  +   G  PD   +N++   L    ++      + +M  N W+  P N  +  T++  
Sbjct: 258 N-QVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDM--NRWKCAP-NLVSHNTLMEG 313

Query: 371 --LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 428
              D D    A+ IW  IL NG+ P   S N  L GL +  R+SD   F  + + ++I++
Sbjct: 314 FYKDGDIRN-ALVIWARILRNGLEPDIISYNITLEGLCSCNRISDAILFLHDAVTKKIVL 372

Query: 429 YEVT 432
            ++T
Sbjct: 373 TKIT 376


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 138/345 (40%), Gaps = 40/345 (11%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFD 171
           ++N +++ L K  R+ +    VR M   G  S P   T++++   YC AGK +E+     
Sbjct: 47  SYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLK 106

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            +   G+  D +    +++++C+              ++    P   +F  L+ G  +E 
Sbjct: 107 EVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREK 166

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           N+E A+    +M          V+ Y T +  L +  ++ EA + L  MK   C P +  
Sbjct: 167 NLEMADSLLQKMAA--SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVA 224

Query: 292 FS-------------NALDILVKLNDSTH----------------------AVQLWDIMM 316
           +S             +A  +L ++ DS H                      A+++ + M 
Sbjct: 225 YSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMA 284

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
              G   + + Y+ + + L K  R  E       M +   +P  +  ++ +  L  A + 
Sbjct: 285 SSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKI 344

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           E A+E    +   G  P   +   L+ GL + GRL++  R  EEM
Sbjct: 345 EEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEM 389



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 119/278 (42%), Gaps = 16/278 (5%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           + A  G +     +N ++D L K GR ++    +  MK  G    +  ++S     C +G
Sbjct: 177 KMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSG 236

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS-- 219
           K  +A    + M     + +VV  N++L  +C+   +   ALE +   +++   DG    
Sbjct: 237 KVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKS-GKIDTALEMM---EQMASSDGCGLN 292

Query: 220 ---FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
              ++ +++G  K G  +EA     E + R    P+ V+ Y + +  L +  +++EA++ 
Sbjct: 293 VVGYSTVVDGLCKLGRTQEARSVM-EAMARAGCRPD-VVTYSSLVNGLCKAGKIEEAVEA 350

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF----PDSLTYNMIF 332
           +R M  E C P    + + +  L        A ++ + M    G      P   TYN + 
Sbjct: 351 VREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALI 410

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
             L K  R+ +  KFF  M      P  ++ +T +  L
Sbjct: 411 GGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGL 448



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 92/199 (46%), Gaps = 7/199 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVM-KEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +N ++D L K+G+ +     +  M   DG  L++  ++++ D  C  G+  EA    + M
Sbjct: 260 YNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAM 319

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
           +  G   DVV  +SL++ +C+   +   A+E +  +  +   P+  ++  L+ G    G 
Sbjct: 320 ARAGCRPDVVTYSSLVNGLCKA-GKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGR 378

Query: 233 VEEANKTFGEMVERFEWN---PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           + EA +   EM          P  V  Y   +  L +  ++D+ALKF + M+ + C P  
Sbjct: 379 LAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDG 438

Query: 290 KFFSNALDILVKLNDSTHA 308
             +S  ++ L +   +  A
Sbjct: 439 VSYSTIVEGLARSGRALQA 457



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 41/177 (23%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L+   ++ +VD L K GR ++  + +  M   G    + T++S+ +  C AGK +EA
Sbjct: 288 GCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEA 347

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICR-------------------------------- 194
           V +   M+M G + + V   SL+  +C                                 
Sbjct: 348 VEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYN 407

Query: 195 -------QENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
                  +  +   AL+F  R++ +  DPDG S++ ++EG  + G   +A     E+
Sbjct: 408 ALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEV 464



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 48/251 (19%), Positives = 99/251 (39%), Gaps = 5/251 (1%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           M   G   + V  N+L++   +Q       R LE +    + + P+  S+  LLEG  K 
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETM--AARDIQPNVVSYNGLLEGLCKL 58

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
               EA +   +M+ R   +   ++ Y T L    +  +V+E+ + L+ +      P   
Sbjct: 59  ERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDAL 118

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            ++  +  L K +            M+  G  P  +T+N +     + K +   +    +
Sbjct: 119 MYTKVVASLCK-SARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQK 177

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M  +  +   +   T +  L  A   + A ++   +  +G  P   + +  + GL   G+
Sbjct: 178 MAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGK 237

Query: 411 LSDVRRFAEEM 421
           + D  +  E+M
Sbjct: 238 VLDAHQVLEQM 248


>gi|334182978|ref|NP_001185123.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332193283|gb|AEE31404.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 811

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 148/316 (46%), Gaps = 14/316 (4%)

Query: 116 WNLMVDVLGKNG-RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + ++VD L K G     M  +V+++ +   L++  F S+ D +C   ++DEA+  F +M 
Sbjct: 464 YGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMG 523

Query: 175 MHGVEQDVVAVNSLL------SAICRQENQTS--RALEFLNRVKKIVDPDGDSFAILLEG 226
           ++G++ DV    +++       A C+    T   +  + + R K  +  D     +++  
Sbjct: 524 IYGIKPDVATFTTVMRVSIMEDAFCKHMKPTIGLQLFDLMQRNK--ISADIAVCNVVIHL 581

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             K   +E+A+K F  ++E  +  P+ ++ Y T +      +++DEA +   ++K     
Sbjct: 582 LFKCHRIEDASKFFNNLIEG-KMEPD-IVTYNTMICGYCSLRRLDEAERIFELLKVTPFG 639

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           P     +  + +L K ND   A++++ IM    G+ P+++TY  + +   K+  +    K
Sbjct: 640 PNTVTLTILIHVLCKNNDMDGAIRMFSIM-AEKGSKPNAVTYGCLMDWFSKSVDIEGSFK 698

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            F EM +    P+ ++ +  I  L      + A  I++  ++  +LP   +   L+ G  
Sbjct: 699 LFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYC 758

Query: 407 NLGRLSDVRRFAEEML 422
            +GRL +     E ML
Sbjct: 759 KVGRLVEAALLYEHML 774



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 131/299 (43%), Gaps = 12/299 (4%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF------D 155
           +  G+  RL+   +N ++D   +  RF++     R+M   G+   + TF ++       D
Sbjct: 486 KMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMED 545

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
           ++C   K    +  FD+M  + +  D+   N ++  + +       +  F N ++  ++P
Sbjct: 546 AFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEP 605

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI-TLIRGKQVDEAL 274
           D  ++  ++ G+     ++EA + F E+++   + P  V    T LI  L +   +D A+
Sbjct: 606 DIVTYNTMICGYCSLRRLDEAERIF-ELLKVTPFGPNTVTL--TILIHVLCKNNDMDGAI 662

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           +   +M  +   P    +   +D   K  D   + +L++ M    G  P  ++Y++I + 
Sbjct: 663 RMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQE-KGISPSIVSYSIIIDG 721

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           L K  RV E    FH+ I  +  P  +  A  I           A  ++ ++L NG+ P
Sbjct: 722 LCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKP 780



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 64/341 (18%), Positives = 144/341 (42%), Gaps = 41/341 (12%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +++   K G  ++ ++  +VM++ G+   L  ++++ D Y  AG        F      G
Sbjct: 292 LINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKG 351

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
           V+ DVV  +S +    +  +  + ++ +   + + + P+  ++ IL++G  ++G + EA 
Sbjct: 352 VKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAF 411

Query: 238 KTFGEMVER----------------------------FE-----WNPEHVLAYETFLITL 264
             +G++++R                            +E       P  V+ Y   +  L
Sbjct: 412 GMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGL 471

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            +   +  A++F   M G++    +  F++ +D   +LN    A++++ +M ++ G  PD
Sbjct: 472 SKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIY-GIKPD 530

Query: 325 SLTYNMIF------ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
             T+  +       +   K+ +     + F  M +N+       C   I +L      E 
Sbjct: 531 VATFTTVMRVSIMEDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIED 590

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
           A + +N ++E  + P   + N ++ G  +L RL +  R  E
Sbjct: 591 ASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFE 631



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/319 (19%), Positives = 129/319 (40%), Gaps = 38/319 (11%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF------- 205
           + +S  G+ + D     FD +   G+E   V+ +  +      + + ++AL+F       
Sbjct: 187 MLNSLIGSDRVDLIADHFDKLCRGGIEPSGVSAHGFVLDALFCKGEVTKALDFHRLVMER 246

Query: 206 --------LNRVKK----------------IVD----PDGDSFAILLEGWEKEGNVEEAN 237
                    N+V K                ++D    P+  +F  L+ G+ K G ++ A 
Sbjct: 247 GFRVGIVSCNKVLKGLSVDQIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAF 306

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
             F  M +R    P+ ++AY T +    +   +    K       +     +  FS+ +D
Sbjct: 307 DLFKVMEQR-GIEPD-LIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTID 364

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
           + VK  D   A  ++  M+   G  P+ +TY ++ + L ++ R++E    + +++K   +
Sbjct: 365 VYVKSGDLATASVVYKRMLC-QGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGME 423

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417
           P+ +  ++ I              ++  +++ G  P       L+ GL   G +    RF
Sbjct: 424 PSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRF 483

Query: 418 AEEMLNRRILIYEVTMHKL 436
           + +ML + I +  V  + L
Sbjct: 484 SVKMLGQSIRLNVVVFNSL 502



 Score = 44.7 bits (104), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 78/178 (43%), Gaps = 3/178 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++   YC   + DEA   F+++ +     + V +  L+  +C+  +       F   
Sbjct: 609 TYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIM 668

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            +K   P+  ++  L++ + K  ++E + K F EM E+   +P  +++Y   +  L +  
Sbjct: 669 AEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEK-GISPS-IVSYSIIIDGLCKRG 726

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
           +VDEA             P +  ++  +    K+     A  L++  M+ +G  PD L
Sbjct: 727 RVDEATNIFHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYE-HMLRNGVKPDDL 783


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 140/328 (42%), Gaps = 20/328 (6%)

Query: 107 RGQRLSPYAWNLMVD---VLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCG 159
           RG   + + +N MV    +LG      Q+  A R+ KE    D +    T   + D  C 
Sbjct: 257 RGIPPNVFTYNCMVHGFCILG------QLNEATRLFKEMVGRDVMPDTVTLTILVDGLCK 310

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDG 217
            G   EA + F+ M+  GVE ++   N+L+   C Q   N+  +  E +  +++   P  
Sbjct: 311 EGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIM--IRQGCAPGV 368

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            S+ IL+ G+ K   ++EA     EM  +   NP+ V  Y T +  L +  +  EAL   
Sbjct: 369 HSYNILINGFCKSRRMDEAKSLLAEMYHK-ALNPDTV-TYSTLMQGLCQFGRPKEALNIF 426

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
           + M      P L  +S  LD   K      A++L   M       P+ + + ++ E +  
Sbjct: 427 KEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQE-KKLEPNIVHHTILIEGMFI 485

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             ++   ++ F ++  +  +PT       I  LL     + A +++  + ++G LP   S
Sbjct: 486 AGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCS 545

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRR 425
            N ++ G       S   R  +EM+ +R
Sbjct: 546 YNVMIQGFLQNQDSSTAIRLIDEMVGKR 573



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 149/349 (42%), Gaps = 39/349 (11%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y+ N++++ L +    +   + +  M + G+  +  TF ++ +  C  GK  EAV  F+ 
Sbjct: 124 YSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNE 183

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEG 231
           M   G E +V++ N++++ +C+  N TS A++   ++++    PD  ++  +++   K+ 
Sbjct: 184 MVRRGHEPNVISYNTIINGLCKTGN-TSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDR 242

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V +A +   EM++R    P +V  Y   +       Q++EA +  + M G +  P    
Sbjct: 243 LVNDAMEFLSEMLDR--GIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVT 300

Query: 292 FSNALDILVKLNDSTHAVQLWDIM----------------------------------MV 317
            +  +D L K    + A  +++ M                                  M+
Sbjct: 301 LTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMI 360

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
             G  P   +YN++     K++R+ E +    EM      P  +  +T +  L     P+
Sbjct: 361 RQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPK 420

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            A+ I+  +   G+LP   + + LL G    G L +  +  + M  +++
Sbjct: 421 EALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKL 469



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 143/320 (44%), Gaps = 6/320 (1%)

Query: 96  SSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           S AVD F+     G +     +N ++D L K+         +  M + G+  ++ T+  +
Sbjct: 210 SMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCM 269

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
              +C  G+ +EA   F  M    V  D V +  L+  +C++   +   L F    +K V
Sbjct: 270 VHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGV 329

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           +P+  ++  L++G+  +  + EA K F  M+   +     V +Y   +    + +++DEA
Sbjct: 330 EPNISTYNALMDGYCLQRLMNEAKKVFEIMIR--QGCAPGVHSYNILINGFCKSRRMDEA 387

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
              L  M  +   P    +S  +  L +      A+ ++  M  + G  P+ +TY+++ +
Sbjct: 388 KSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSY-GLLPNLVTYSILLD 446

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
              K+  + E  K    M + + +P  ++    I  +  A + E+A E+++ +  +GI P
Sbjct: 447 GFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRP 506

Query: 394 LEASANELLVGLRNLGRLSD 413
              +   ++ GL   G LSD
Sbjct: 507 TIRTYTVMIKGLLKEG-LSD 525



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 85/196 (43%), Gaps = 5/196 (2%)

Query: 232 NVEEANKTFGEMVERFEWNPEHVLA-YETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           ++++A  +F  MV     NP   +A +  FL +  + KQ    +     M        + 
Sbjct: 68  SIDDALASFYRMVR---MNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVY 124

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
             +  ++ L +LN    AV +   M    G  P + T+N +   L    ++ E  + F+E
Sbjct: 125 SLNVLINCLCRLNHVDFAVSILGKMFKL-GIHPTASTFNALINGLCNEGKIKEAVELFNE 183

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M++   +P  ++  T I  L       +A++++  + +NG  P   + N ++  L     
Sbjct: 184 MVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRL 243

Query: 411 LSDVRRFAEEMLNRRI 426
           ++D   F  EML+R I
Sbjct: 244 VNDAMEFLSEMLDRGI 259


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 152/366 (41%), Gaps = 47/366 (12%)

Query: 116 WNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +M+D L K GRF++   +W+  R+M  +      T+  +    C +G  D A   +  
Sbjct: 267 YKVMLDGLCKLGRFKEAGEVWS--RMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSD 324

Query: 173 MSMHGVEQDVVAVNSLLSAIC--------------------RQ-------------ENQT 199
           M   G+  DV   NSL+   C                    RQ                 
Sbjct: 325 MVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMV 384

Query: 200 SRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH--VL 255
           S A E L +++      PD  +F  L+ G  + G    AN+ F E++E    + E   V 
Sbjct: 385 SEATELLKQLENDASCSPDKVTFGTLIHGLCENG---YANRAF-EILEDARNSGEELDVF 440

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
           +Y + +    +  +  +A +  + M  + C P    ++  ++   +++    A++++ I 
Sbjct: 441 SYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIY-IE 499

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
           M  +G  P  +TYN + + L K ++  E      EM++  ++P     A+ I  L    +
Sbjct: 500 MTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKK 559

Query: 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 435
            ++A+ IW+ IL+ G+       N L+ GL + G++ +      EM  +      VT + 
Sbjct: 560 VDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNT 619

Query: 436 LKKAFY 441
           L   FY
Sbjct: 620 LMDGFY 625



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 117/256 (45%), Gaps = 10/256 (3%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G+ L  ++++ M++   K+GR        + M +DG   +   + ++ + +C   K ++A
Sbjct: 434 GEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDA 493

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQEN---QTSRALEFLNRVKKIVDPDGDSFAIL 223
           +  +  M+ +G    ++  N+L+  +C+ E     +S   E L R  K   PD  ++A L
Sbjct: 494 IKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFK---PDIRTYASL 550

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G  ++  V+ A + + E+++        V+ +   +  L    +VDEA      MK +
Sbjct: 551 IRGLCRDKKVDVALRIWDEILD--AGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEK 608

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
           NC P L  ++  +D   ++     A  LW  ++  +G  PD +TYN   + L    R  E
Sbjct: 609 NCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILD-NGLKPDIVTYNTRIKGLCSCNRTPE 667

Query: 344 VEKFFHEMIKNEWQPT 359
                +E++     PT
Sbjct: 668 GVLLLNEVLATGIMPT 683



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 138/327 (42%), Gaps = 7/327 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +N+M   L  +G   +    ++ ++ D   S    TF ++    C  G  + A    +  
Sbjct: 371 YNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDA 430

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGN 232
              G E DV + +S+++  C+ + +T  A E + N VK    P+   +  L+ G+ +   
Sbjct: 431 RNSGEELDVFSYSSMINRFCK-DGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSK 489

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + +A K + EM          ++ Y T +  L + ++  EA    + M      P ++ +
Sbjct: 490 INDAIKIYIEMTS--NGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTY 547

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           ++ +  L +      A+++WD ++   G   D + +N++   L    +V E    + EM 
Sbjct: 548 ASLIRGLCRDKKVDVALRIWDEILD-AGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMK 606

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +    P  +   T +    +    + A  +W  IL+NG+ P   + N  + GL +  R  
Sbjct: 607 EKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTP 666

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKA 439
           +      E+L   I+   +T   L +A
Sbjct: 667 EGVLLLNEVLATGIMPTVITWSILVRA 693



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 113/260 (43%), Gaps = 9/260 (3%)

Query: 164 DEAVMSF-DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-----KIVDPDG 217
           D A+ +F D+ S+ G    V + N+LL A  R   + S A  F   +      + + P+ 
Sbjct: 100 DAALAAFRDLPSLLGCNPGVRSHNTLLDAFVRAR-RYSDADAFFASLSHGAFGRRIAPNL 158

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++ I+L      G+V+ A   F  +  R    P+ V  Y T +  L +  Q+D AL  L
Sbjct: 159 QTYNIILRSLCARGDVDRAVSLFSSLRRR-GVAPDRV-TYSTLMSGLAKHDQLDNALDLL 216

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M           ++  L    +      A+++W+ ++   GA P+  TY ++ + L K
Sbjct: 217 DEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCK 276

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             R  E  + +  M+ N  Q   +     I  L  + + + A  +++ +++ G++   + 
Sbjct: 277 LGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSV 336

Query: 398 ANELLVGLRNLGRLSDVRRF 417
            N L+ G   +GR  +  +F
Sbjct: 337 YNSLIKGFCEVGRTGEAWKF 356



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 69/333 (20%), Positives = 142/333 (42%), Gaps = 17/333 (5%)

Query: 37  RPRFPTHLDAPYISSSARIICEILAHASSDDIESALACT-GIIPTPDLVHEVLQLSYDSP 95
           RPRF        +S+ +R +    A A+  D+ S L C  G+     L+   ++    S 
Sbjct: 78  RPRFSESAALVVLSAFSRALMPDAALAAFRDLPSLLGCNPGVRSHNTLLDAFVRARRYSD 137

Query: 96  SSAVDFF---RWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           + A  FF        G+R++P    +N+++  L   G  ++  +    ++  GV     T
Sbjct: 138 ADA--FFASLSHGAFGRRIAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVT 195

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           ++++        + D A+   D M  +GV+ D V  N+LLS  C +     +A++   ++
Sbjct: 196 YSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALLSG-CFRTGMFEKAMKVWEQL 254

Query: 210 KK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +     P+  ++ ++L+G  K G  +EA + +  M+     +    + Y   +  L R 
Sbjct: 255 VRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMA--NNHQADTVTYGILIHGLCRS 312

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
             VD A +    M        +  +++ +    ++  +  A + WD    F G      T
Sbjct: 313 GDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWD-STGFSG-IRQITT 370

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
           YN++ + L+ +  V E  +   ++ +N+   +P
Sbjct: 371 YNIMTKGLLDSGMVSEATELLKQL-ENDASCSP 402



 Score = 45.1 bits (105), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 87/187 (46%), Gaps = 3/187 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D L K  ++++  +  + M E G    + T+AS+    C   K D A+  +D + 
Sbjct: 512 YNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEIL 571

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G++ DV+  N L+  +C           +L   +K   P+  ++  L++G+ + G+++
Sbjct: 572 DAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSID 631

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           +A   +  +++     P+ ++ Y T +  L    +  E +  L  +      PT+  +S 
Sbjct: 632 KAASLWTAILDN-GLKPD-IVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSI 689

Query: 295 ALDILVK 301
            +  ++K
Sbjct: 690 LVRAVIK 696


>gi|357129487|ref|XP_003566393.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Brachypodium distachyon]
          Length = 837

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 156/403 (38%), Gaps = 70/403 (17%)

Query: 98  AVDFFRWA---------GR----GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG- 143
           AV F +W          GR    G R S    +++V    K  R ++       M   G 
Sbjct: 252 AVAFSKWGKVDGAVELLGRMELLGMRPSEKTLSVLVHGFAKQLRLDKAMEMFDKMGSYGF 311

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           V  LP ++ + +  C   +  +AV  F+ M    V  D   +  +L A CR+ +     L
Sbjct: 312 VAGLPMYSVLIEGLCQKKEIGKAVKLFEEMKRGEVAPDARLLKKMLEAFCREGDFAIAGL 371

Query: 204 EFLNRVKKIVDPDG--DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE------HVL 255
            F+N   + + P G    F ++LEG+   G  E A +    M+   +   +      HV+
Sbjct: 372 -FINENARQLKPSGVIALFNVVLEGFVNHGQAEAAYQLLTSMIRGGQGISDGVTVGAHVV 430

Query: 256 -----------AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
                      ++   +  L + K++D AL  ++ M G  C   L  F++ +  L  L+ 
Sbjct: 431 DISEDVKPNSDSFNIVVCGLCKVKKLDNALALIKDMTGIGCKGKLLMFNDLIHELCSLDR 490

Query: 305 STHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK------------------------- 339
                +++++M    G  P   TYN +F  + + K                         
Sbjct: 491 LDEGYKMFNLMKNL-GLIPSEFTYNSLFYGICRRKDPNCALDLLRDMRTNGHRPWIKNCT 549

Query: 340 ----------RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
                     R+ E  +F  EM+K  + P  +  + A+  L    E + A+ I+  I   
Sbjct: 550 EMVQQLCISGRITEALQFLDEMLKMGFLPDIVTYSAAMNGLCKTGEVDNALGIFRDISSK 609

Query: 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
             LP   + N L+ G R  G+LS+ +   EEML + +    VT
Sbjct: 610 YYLPDVVAHNILINGFRISGKLSEAQEVMEEMLEKGLFPSIVT 652



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 136/315 (43%), Gaps = 12/315 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N++V  L K  + +     ++ M   G    L  F  +    C   + DE    F++M
Sbjct: 442 SFNIVVCGLCKVKKLDNALALIKDMTGIGCKGKLLMFNDLIHELCSLDRLDEGYKMFNLM 501

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLEGWEKEGN 232
              G+       NSL   ICR+++    AL+ L  ++     P   +   +++     G 
Sbjct: 502 KNLGLIPSEFTYNSLFYGICRRKDPNC-ALDLLRDMRTNGHRPWIKNCTEMVQQLCISGR 560

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL--- 289
           + EA +   EM+ +  + P+ ++ Y   +  L +  +VD AL   R +  +   P +   
Sbjct: 561 ITEALQFLDEML-KMGFLPD-IVTYSAAMNGLCKTGEVDNALGIFRDISSKYYLPDVVAH 618

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
               N   I  KL+++   ++     M+  G FP  +TYN++ +   K+  + +     +
Sbjct: 619 NILINGFRISGKLSEAQEVME----EMLEKGLFPSIVTYNLMIDVWCKSGNIEKAIACLN 674

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           +MI  E  PT +   + I  L     P+ AI +W+ +++ G  P + +    + GL    
Sbjct: 675 KMIDEEESPTVVTYTSLIDGLCSTGRPDEAIALWHKMMDKGCAPNKIAYTAFVNGLCKRA 734

Query: 410 RLSDVRRFAEEMLNR 424
           R+     + EEM+ +
Sbjct: 735 RVDTALTYYEEMMTK 749



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 97/217 (44%), Gaps = 12/217 (5%)

Query: 95  PSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRF---EQMWNAVRVMKEDGVLSLPT 149
           P +A+  F  A      +P  Y +N ++D L K GR    E     + V   D  +   T
Sbjct: 154 PDAALLVFDGARTCLSCTPNSYTFNCLLDTLAKAGRADDAEARLQEMVVRCGDESVDKYT 213

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
             S+   YC AG+ D+A   F+ MS  G V++ V+   ++L+    +  +   A+E L R
Sbjct: 214 LTSLLQCYCNAGRPDDANGVFERMSQRGWVDEHVL---TILAVAFSKWGKVDGAVELLGR 270

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++ + + P   + ++L+ G+ K+  +++A + F +M          +  Y   +  L + 
Sbjct: 271 MELLGMRPSEKTLSVLVHGFAKQLRLDKAMEMFDKMGSY--GFVAGLPMYSVLIEGLCQK 328

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
           K++ +A+K    MK     P  +     L+   +  D
Sbjct: 329 KEIGKAVKLFEEMKRGEVAPDARLLKKMLEAFCREGD 365



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
           +G   S   +NLM+DV  K+G  E+    + +++ E+   ++ T+ S+ D  C  G+ DE
Sbjct: 644 KGLFPSIVTYNLMIDVWCKSGNIEKAIACLNKMIDEEESPTVVTYTSLIDGLCSTGRPDE 703

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
           A+  +  M   G   + +A  + ++ +C++
Sbjct: 704 AIALWHKMMDKGCAPNKIAYTAFVNGLCKR 733


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 130/280 (46%), Gaps = 4/280 (1%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y ++++VD L K+G   +  N + VM + GV+  + T++S+ D YC   + ++A   F  
Sbjct: 270 YTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFST 329

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           MS  GV     + N +++ + + +        F     K + PD  ++  L++G  K G 
Sbjct: 330 MSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGR 389

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +  A +   EM       P  +L Y + +  L +   +D+A+  ++ +K +   P++  +
Sbjct: 390 ISYAWQLVDEM--HNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTY 447

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +D L K     +A  ++  +++  G   ++ TYN++   L K    +E E    +M 
Sbjct: 448 NILIDGLCKGGRLKNAQDVFQDLLI-KGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKME 506

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
            N   P  +   T I  L   DE E A ++   ++  G+L
Sbjct: 507 NNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRGLL 546



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 127/295 (43%), Gaps = 3/295 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF S+   +C  G+  EA   F  M +  +  DV   + L+ A+C+  N T         
Sbjct: 236 TFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVM 295

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +K+ V PD  +++ L++G+     V +A   F  M  R    P H  +Y   +  L + K
Sbjct: 296 MKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTM-SRLGVAP-HAHSYNIMINGLGKIK 353

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            VDEAL   + M  +   P    +++ +D L KL   ++A QL D M   +G   D LTY
Sbjct: 354 MVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHN-NGIPADILTY 412

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N + + L KN  + +      ++     QP+       I  L      + A +++  +L 
Sbjct: 413 NSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLI 472

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
            G      + N ++ GL   G  ++      +M N  I+   VT   + +A + +
Sbjct: 473 KGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRK 527



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 100/485 (20%), Positives = 194/485 (40%), Gaps = 67/485 (13%)

Query: 17  IPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILA-----HASSDDIESA 71
           IP S+    +    + HR  R R PT    P I    +I+  I+      + ++  +   
Sbjct: 30  IPKSNDFDVNNDVSSFHRMLRMR-PT----PSIVEFNKILGSIVKANNNHYTTAISLSHQ 84

Query: 72  LACTGIIPT----PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNG 127
           L   GI PT      LV+    L   + + ++ F +    G   +   +N +++ +  NG
Sbjct: 85  LELKGITPTIVTFNILVNCYCHLGEMTFAFSI-FAKILKLGYHPTTITFNTLINGICLNG 143

Query: 128 RFEQMWNAVRVMKEDGVLSLP------TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           + ++  +       D V++L       ++ ++ +  C  G+   A+     +    V  D
Sbjct: 144 KLKEALHF-----HDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTD 198

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           VV  N +++++C+ +  +     +   + K + PD  +F  L+ G+   G ++EA   F 
Sbjct: 199 VVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFH 258

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           EMV +   NP+ V  +   +  L +   +  A   L VM  +   P +  +S+ +D    
Sbjct: 259 EMVLK-NINPD-VYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCL 316

Query: 302 LNDSTHAVQLWDIM----------------------------------MVFHGAFPDSLT 327
           +N+   A  ++  M                                  M   G  PD++T
Sbjct: 317 VNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVT 376

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN + + L K  R+    +   EM  N      L   + I +L      + AI +   I 
Sbjct: 377 YNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIK 436

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI----YEVTMHKL-KKAFYN 442
           + GI P   + N L+ GL   GRL + +   +++L +   +    Y + ++ L K+  +N
Sbjct: 437 DQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFN 496

Query: 443 ESRSM 447
           E+  +
Sbjct: 497 EAEVL 501



 Score = 38.5 bits (88), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 2/99 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           +G + S Y +N+++D L K GR +   +  + +   G  ++  T+  + +  C  G ++E
Sbjct: 438 QGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNE 497

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-ENQTSRAL 203
           A +    M  +G+  D V   +++ A+ R+ EN+ +  L
Sbjct: 498 AEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKL 536


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 141/351 (40%), Gaps = 40/351 (11%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   S  ++N ++      G++E+    +  M + G+   + TF  + D+ C  GK  E
Sbjct: 244 QGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIE 303

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A     VM   G+  D+V  NSL+   C   +  S    F++   K  +PD  S+ +L+ 
Sbjct: 304 AKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLIN 363

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ K   VEEA K + EM+        +V+ Y++ L  +    +VD+A K   VMK    
Sbjct: 364 GYSKTLKVEEAMKLYNEML--LVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKA--- 418

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
                                            HG   +S TY +  + L KN  + E  
Sbjct: 419 ---------------------------------HGIAENSYTYGIFLDGLCKNDCLFEAM 445

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           K F E+  + ++    N    I  L  A + E A E++  +   G  P   +   ++ G 
Sbjct: 446 KLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGF 505

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456
              G++       ++M         +T + L + FY ES  + ++   L R
Sbjct: 506 CREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFY-ESNKLEEVVQLLHR 555



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 148/336 (44%), Gaps = 9/336 (2%)

Query: 94  SPSSAVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFA 151
           + + A+ FF    R     S  ++N ++  L K   + Q+++    M+  G+ S   T  
Sbjct: 49  TATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLN 108

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211
            + +  C   +  E   +F  +   G   ++V  N+L+  +C  E++ S A     R++K
Sbjct: 109 ILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLC-MEHRISEATRLFLRMQK 167

Query: 212 I-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM---VERFEWNPE-HVLAYETFLITLIR 266
           +   PD  ++  L++G    GN+  A K   EM   + R+E N + +V+ Y   +  L +
Sbjct: 168 LGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCK 227

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
             + DEA +    MK +   P++  +++ +           + +L D M+   G  PD +
Sbjct: 228 VGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLD-QGLQPDMV 286

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           T+N++ + L K  +V E +K    MI++   P  +   + I       +   A E++  +
Sbjct: 287 TFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM 346

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
              G  P   S N L+ G     ++ +  +   EML
Sbjct: 347 PSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEML 382



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 133/322 (41%), Gaps = 34/322 (10%)

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           +M+     SL +F  +         Y +    ++ M + G+  D   +N LL+ +C    
Sbjct: 60  MMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNR 119

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
                  F   +++   P+  ++  L++G   E  + EA + F  M ++    P+ V+ Y
Sbjct: 120 LREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRM-QKLGCTPD-VVTY 177

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
            T +  L     ++ ALK  + M                     LND    +  ++I   
Sbjct: 178 GTLIKGLCGTGNINIALKLHQEM---------------------LND----ISRYEI--- 209

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
                P+ +TYN+I + L K  R  E ++ F EM      P+ ++  + I     A + E
Sbjct: 210 --NCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWE 267

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437
            +  + + +L+ G+ P   + N L+  L   G++ + ++    M+   I+   VT + L 
Sbjct: 268 ESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLI 327

Query: 438 KAF--YNESRSMRDIFDSLERR 457
           + F    +  S R++F S+  +
Sbjct: 328 EGFCMVGDLNSARELFVSMPSK 349


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 130/300 (43%), Gaps = 4/300 (1%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           + +F  I DSYC  G   EA   +D M  HG   D+    SLL  +C Q     +A EF+
Sbjct: 579 VASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLC-QGGHLVQAKEFM 637

Query: 207 -NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              ++K    D  +   LL G  K G ++EA     +MV R    P+    Y   L    
Sbjct: 638 VYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTR-NILPD-TYTYTILLDGFC 695

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           +  +V  AL  L++M  +   P    ++  L+ LV       A  ++  ++   G + D 
Sbjct: 696 KRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADC 755

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           + YN +    +K  +++E+E+    M +NE  P+  +    +   +   +    + ++  
Sbjct: 756 IAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRD 815

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           +++ GI P   +   L+ GL   G +    +F E+M+   +    +    L KAF  +S+
Sbjct: 816 MVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSK 875



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 150/345 (43%), Gaps = 38/345 (11%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
           N++++ L   G+  +  + ++ MK   + +  T+ +I + Y   G+   A+   D M  +
Sbjct: 234 NIVLNSLCTQGKLSKAESMLQKMKNCRLPNAVTYNTILNWYVKKGRCKSALRILDDMEKN 293

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEE 235
           G+E D+   N ++  +C+ + +++RA   L R++++ + PD  S+  L+ G+  EG +  
Sbjct: 294 GIEADLYTYNIMIDKLCKLK-RSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINL 352

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN- 294
           A   F +M+ R    P  V  Y   +    R  + DEA + L  M+     P+   +S  
Sbjct: 353 AIYIFNQML-RQSLKPS-VATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSAL 410

Query: 295 ------------ALDIL-------VKLNDSTHAV------QLWDI--------MMVFHGA 321
                       ALD++       + +N + + +      QL ++         M+  G 
Sbjct: 411 LNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGI 470

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            PD +TY+ +   + K   +HE ++    M K+   P  +   T +     A   + A++
Sbjct: 471 DPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALK 530

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            +  I  +G++      N LL      G +++  +F + M   +I
Sbjct: 531 YFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKI 575



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 127/323 (39%), Gaps = 8/323 (2%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           Q L P    +  ++D   +NGR ++    +  M+  GV  S  T++++ + YC   K   
Sbjct: 363 QSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGP 422

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILL 224
           A+     +    +  +      L+   C Q  + S+A + L   +   +DPD  +++ L+
Sbjct: 423 ALDLIKYLRSRSISINRTMYTILIDGFC-QLGEVSKAKQILKCMLADGIDPDVITYSALI 481

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            G  K G + E  +    M ++    P +VL Y T +    +     EALK+   +    
Sbjct: 482 NGMCKMGMIHETKEILSRM-QKSGVLPNNVL-YTTLVFYFCKAGHAKEALKYFVDIYRSG 539

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
                   +  L    +      A Q    M     +F D  ++N I +   +   V E 
Sbjct: 540 LVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISF-DVASFNCIIDSYCQRGNVLEA 598

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
              +  M+++ W P      + +  L        A E   Y+LE      E + N LLVG
Sbjct: 599 FSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVG 658

Query: 405 LRNLGRLSDVRRFAEEMLNRRIL 427
           +   G L +     E+M+ R IL
Sbjct: 659 ICKHGTLDEALDLCEKMVTRNIL 681



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 149/359 (41%), Gaps = 32/359 (8%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF-D 171
            Y + +++D   K G+       +++M E G++     +  + +     G+   A   F +
Sbjct: 685  YTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQE 744

Query: 172  VMSMHGVEQDVVAVNSLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
            ++   G+  D +A NS+++   +  Q N+  R +   N  +  V P   S+ IL+ G+ K
Sbjct: 745  IICKEGLYADCIAYNSMMNGYLKGGQINEIERLMR--NMHENEVYPSSASYNILMHGYIK 802

Query: 230  EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            +G +      + +MV+     P++V  Y   +  L     ++ A+KFL  M  E  FP  
Sbjct: 803  KGQLSRTLYLYRDMVKE-GIKPDNV-TYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPD- 859

Query: 290  KFFSNALDILVKL----NDSTHAVQLWDIM---------------MVFHGAFPDSLTYNM 330
               + A DIL+K     +  ++A+QL+  M               M   G  P  +  + 
Sbjct: 860  ---NLAFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESS 916

Query: 331  IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
            I   L K  +V E    F  +++    PT     T +  L    + + A  +   +   G
Sbjct: 917  IVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCG 976

Query: 391  ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD 449
            +     + N L+ GL N   + D     EEM ++ +L    T   L  A Y  + +M+D
Sbjct: 977  LKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTGAMY-ATGTMQD 1034



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 131/312 (41%), Gaps = 22/312 (7%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T  ++    C  G  DEA+   + M    +  D      LL   C++       +     
Sbjct: 651 TLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMM 710

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           ++K + PD  ++  LL G   EG V+ A+  F E++ + E      +AY + +   ++G 
Sbjct: 711 LEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICK-EGLYADCIAYNSMMNGYLKGG 769

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           Q++E  + +R M     +P+   ++  +   +K    +  + L+   MV  G  PD++TY
Sbjct: 770 QINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRD-MVKEGIKPDNVTY 828

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI-- 386
            ++   L +   +    KF  +M+     P  L     I    +  +   A+++++Y+  
Sbjct: 829 RLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKW 888

Query: 387 ---------LEN-----GILPLEASANELLVGLRNLGRLSD-VRRFAEEM---LNRRILI 428
                    L+      G++P E + + ++ GL   G++ + +  F+  M   +   I  
Sbjct: 889 VGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIAT 948

Query: 429 YEVTMHKLKKAF 440
           +   MH L K F
Sbjct: 949 FTTLMHGLCKEF 960


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 167/373 (44%), Gaps = 19/373 (5%)

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY-AWNLMVDVLGKNGRFEQMWNA 135
           I+ TP  + ++L+L  D P+    F R  G+      +  + + ++ LG  G+F+ +   
Sbjct: 75  ILITPVQLCKLLELPLDVPTLLEIFERVGGQKGYCHTFDVYYVFINKLGAIGKFKLIDKL 134

Query: 136 VRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAIC 193
           +  MKE+G++   + F  I   Y  AG+  +A+ +  D+ +++  E    + + +L  + 
Sbjct: 135 LMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILV 194

Query: 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
                      F + + K V P   +F I+++       V+ A     +M +     P  
Sbjct: 195 TGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKH-GCVPNS 253

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           ++ Y+T +  L +  QV EALK L  M    C P ++ F++ +  L K+N    A +L D
Sbjct: 254 IV-YQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVD 312

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA--TAITMLL 371
             M+  G +PD++TY  +   L +  +++E  K   ++      P P N    T I   +
Sbjct: 313 -RMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKI------PCPNNAILNTLINGYV 365

Query: 372 DADEPEIAIEIWNYILEN-GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RI 426
            + + + A    N  + N G  P   + N L+ GL   G LS  R    EM  R     +
Sbjct: 366 MSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNV 425

Query: 427 LIYEVTMHKLKKA 439
           + Y + ++ L KA
Sbjct: 426 ITYAILVNGLCKA 438



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 125/285 (43%), Gaps = 10/285 (3%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + RG  ++   +N ++  L +  +     N +  M   G    L T+ S+    C   + 
Sbjct: 452 SARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRI 511

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAI 222
           DEA   F  M + G   + V  N+L+ A+ R+     +AL  +N  + +    D  ++  
Sbjct: 512 DEAFRLFHNMLLDGAVANNVTYNTLIHALLRR-GAFQKALTLVNDMLFRGCTLDKITYNG 570

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++ + K GN+E+  + + +M+   +      ++    +  L +  +VD A +FLR    
Sbjct: 571 LIKAFCKVGNIEKGLELYEQMI--MDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAIN 628

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
               P +  +++ L+ L K+     A+ L+D + V  G  PD+ TYN       K   V+
Sbjct: 629 RGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQV-EGVRPDAFTYNTFISWQCKEGMVN 687

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE----IAIEIW 383
           +   FF+  I+N + P+ L     +  LL     E    +  E+W
Sbjct: 688 DACLFFYRGIENGFVPSNLTWNVLVYTLLKQSNQENNFFVLDELW 732



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 125/299 (41%), Gaps = 41/299 (13%)

Query: 152 SIFDSYCGAGKYDEAVMSF--DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           ++ + Y  +G+  EA  SF  + M   G + D+   N L+  +C+ E   S A + +N +
Sbjct: 359 TLINGYVMSGQLKEA-QSFLNETMINFGFQPDIFTYNILMHGLCK-EGSLSFARDLVNEM 416

Query: 210 -KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            ++  +P+  ++AIL+ G  K G +EEA     EM  R      + + Y   +  L R +
Sbjct: 417 SRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSAR--GLTINSVIYNCLICALCRKE 474

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM------------- 315
           +V  AL  L  M  + C P L  +++ +  L K++    A +L+  M             
Sbjct: 475 KVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYN 534

Query: 316 ---------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
                                M+F G   D +TYN + +   K   + +  + + +MI +
Sbjct: 535 TLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMD 594

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
                 ++C   I  L    + + A E     +  G +P   + N +L GL  +GR+ +
Sbjct: 595 GLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKE 653



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 127/321 (39%), Gaps = 24/321 (7%)

Query: 131 QMWNAVRVMKEDGVLS----LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           Q+  A+++++E  V+     + TF  +    C   K  +A    D M + G   D +   
Sbjct: 268 QVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYG 327

Query: 187 SLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
            LL  +CR  + N+  + L       KI  P+      L+ G+   G ++EA     E +
Sbjct: 328 FLLHGLCRIGKLNEARKIL------IKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETM 381

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
             F + P+ +  Y   +  L +   +  A   +  M    C P      N +   + +N 
Sbjct: 382 INFGFQPD-IFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEP------NVITYAILVNG 434

Query: 305 STHAVQLWDIMMVFHGAFPDSLTYN-MIFECLI----KNKRVHEVEKFFHEMIKNEWQPT 359
              A  L +  +V H      LT N +I+ CLI    + ++VH       EM     +P 
Sbjct: 435 LCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPD 494

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
                + I  L   D  + A  +++ +L +G +    + N L+  L   G          
Sbjct: 495 LFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVN 554

Query: 420 EMLNRRILIYEVTMHKLKKAF 440
           +ML R   + ++T + L KAF
Sbjct: 555 DMLFRGCTLDKITYNGLIKAF 575


>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 870

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 150/342 (43%), Gaps = 27/342 (7%)

Query: 96  SSAVD-----FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF 150
           S+A+D     F + + +G + + +   ++V    + GR +Q    V   K  G ++   +
Sbjct: 164 SNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGRTKQALEFVD-GKMGGNVNRVVY 222

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
            ++  S+C     DEA    + M+  G+  DVV  NS +SA+CR      +  E  +R+ 
Sbjct: 223 NTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALCR----AGKVFE-ASRIF 277

Query: 211 KIVDPDGD---------SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL--AYET 259
           + +  DG+         +F ++L+G+ +EG +EEA      +VE  +     V   +Y T
Sbjct: 278 RDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEAR----SLVETMKKGGNFVSLESYNT 333

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH 319
           +L+ L+R  ++ E    L  M      P +  ++  +D L + +    A +L D +MV +
Sbjct: 334 WLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMD-LMVSN 392

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
           G +PD++TY  +        +V E +   +EMI+    P    C T +  L        A
Sbjct: 393 GVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEA 452

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            E+   + E        + N ++ GL   G L        EM
Sbjct: 453 EEMLQKMNEKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEM 494



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 164/399 (41%), Gaps = 89/399 (22%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMK---EDGVL-SLPTFASIFDSYCGAGKYDEAVMS 169
           Y++N+++D L +N     M +A R+M     +GV     T+ ++   YC  GK  EA   
Sbjct: 364 YSYNIVMDGLCRN---HMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAI 420

Query: 170 FDVMSMHGV-----------------------------------EQDVVAVNSLLSAICR 194
            + M   G                                    + D V  N +++ +CR
Sbjct: 421 LNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVVNGLCR 480

Query: 195 -----------------------QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
                                  +EN  +  +  ++ V   V PD  ++  L+ G  K G
Sbjct: 481 NGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNV-PDVITYTTLINGLCKVG 539

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +EEA K F EM+ +   +P+ V  Y+TF++   +  ++  AL+ L+ M+   C  TL+ 
Sbjct: 540 KLEEAKKKFIEMMAK-NLHPDSV-TYDTFVLNFCKQGKISSALRVLKDMERNGCSKTLQT 597

Query: 292 FSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
           +++   +++ L       +++ +M  M   G  PD  TYN +  CL +  +  +     H
Sbjct: 598 YNS---LILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDATSLLH 654

Query: 350 EMI-KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL-----ENGILPLEASANELLV 403
           EM+ K    P   +    I     + + ++A E+++  L     +  +  L    NELL 
Sbjct: 655 EMLDKGVVSPNVSSFKILIKAFCKSGDFKVACELFDVALSVCGHKEALYSL--MFNELLA 712

Query: 404 GLRNLGRLSDVRRFAEEMLNRRIL----IYEVTMHKLKK 438
           G    G+LSD +   E  L R +L    +YE  + KL K
Sbjct: 713 G----GKLSDAKELFEASLERSLLSKNFMYEDLIDKLCK 747



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 127/312 (40%), Gaps = 42/312 (13%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF--- 205
           TF  +  S C +   D A   FD MS  G + +   V  L+   CR   +T +ALEF   
Sbjct: 153 TFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRA-GRTKQALEFVDG 211

Query: 206 -----LNRV------------------KKIVD--------PDGDSFAILLEGWEKEGNVE 234
                +NRV                  +K+V+        PD  +F   +    + G V 
Sbjct: 212 KMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALCRAGKVF 271

Query: 235 EANKTFGEMVERFEWN-PE-HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           EA++ F +M    E   P+ +V+ +   L    +   ++EA   +  MK    F +L+ +
Sbjct: 272 EASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESY 331

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  L  L++         + D  MV +G  P+  +YN++ + L +N  + +  +    M+
Sbjct: 332 NTWLLGLLRNGKLLEGRSVLD-EMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMV 390

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
            N   P  +   T +       +   A  I N ++  G  P   + N LL  L   GR S
Sbjct: 391 SNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKS 450

Query: 413 DVRRFAEEMLNR 424
           +    AEEML +
Sbjct: 451 E----AEEMLQK 458


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 139/350 (39%), Gaps = 6/350 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           +FR       L   ++  ++  L  + R ++       +K  G   ++  + ++ D    
Sbjct: 96  YFRAVTPKASLDVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLK 155

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           AG+ ++ + +F+ MS             ++  +C+ +        F   V+K   PD  +
Sbjct: 156 AGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTIT 215

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPE-HVLAYETFLITLIRGKQVDEALKFLR 278
           +  L++G+ K   ++EA K    M+ +    PE   + Y + +    +   ++EA + + 
Sbjct: 216 YTTLIDGFSKASKMDEARKLLDVMLTK---GPEPTAVTYGSIVHGFCKLDMINEAKEVIA 272

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M+   C P L  F++ L   +    +  A Q+    M   G  PD + Y  + + L   
Sbjct: 273 QMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVL-TEMTARGCAPDVILYTSLIDLLFST 331

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
            RV E    F  MI+    P  L   T I         E A EI   + ++G+ P   + 
Sbjct: 332 GRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAY 391

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 448
           N L+ G   L R+       + M+   I    VT + L    + + ++ R
Sbjct: 392 NSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDR 441



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 137/346 (39%), Gaps = 35/346 (10%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           ++ ++ ++        K DEA   F+ M  +G E DV+A  +L+   C+   Q     + 
Sbjct: 6   TIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKA-GQPQVGHKL 64

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEA-------------------------NKTF 240
           LN+  K   PD   +  ++ G+ K G+++                           +K  
Sbjct: 65  LNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRI 124

Query: 241 GEMVERFE-----WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
            E  E FE         +V+AY   +  L++  ++++ LK    M G +C PT   ++  
Sbjct: 125 DEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVV 184

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           +D L K      A ++++  MV  G  PD++TY  + +   K  ++ E  K    M+   
Sbjct: 185 IDGLCKAQMLPDACKVFE-QMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKG 243

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
            +PT +   + +      D    A E+   + E G  P       LL    + GR  +  
Sbjct: 244 PEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAY 303

Query: 416 RFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL-ERRC 458
           +   EM  R      +    L    ++  R    R +FDS+ E+ C
Sbjct: 304 QVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGC 349



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 125/301 (41%), Gaps = 40/301 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  ++D+L   GR  +  +    M E G      T+ +I  ++   G  + A    ++M+
Sbjct: 321 YTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMA 380

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             GV  D  A NSL+    + E +  +A    +R V   + P+  +F +L+ G  K+G  
Sbjct: 381 KSGVGPDCFAYNSLMDGYVKLE-RVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKT 439

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A   F EM+E+ E  P  +++Y   +  L +  +V EA  FL+  +            
Sbjct: 440 DRAFSLFKEMLEK-EEVPPTLVSYTILIDGLGKAGRVSEA--FLQFQE------------ 484

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
                                 M+  G  P+  TY  +   L K  R+ E +K   +M+K
Sbjct: 485 ----------------------MIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVK 522

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               P     +  IT L+D+   + A +++  +++ G  P E +   L  G R  GR  D
Sbjct: 523 LGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALD 582

Query: 414 V 414
           +
Sbjct: 583 L 583



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 89/410 (21%), Positives = 149/410 (36%), Gaps = 87/410 (21%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + +++D L K             M + G +    T+ ++ D +  A K DEA    DVM 
Sbjct: 181 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 240

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV--------DPDGDSFAILLEG 226
             G E   V   S++   C+        L+ +N  K+++        +P    F  LL  
Sbjct: 241 TKGPEPTAVTYGSIVHGFCK--------LDMINEAKEVIAQMRERGCEPGLFIFTSLLSY 292

Query: 227 WEKEGNVEEANKTFGEMVER----------------FEWN--PE--HV------------ 254
           +  +G  EEA +   EM  R                F     PE  HV            
Sbjct: 293 YLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPD 352

Query: 255 -LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
            L Y T +    +   V+ A + L +M      P    +++ +D  VKL     A  ++D
Sbjct: 353 ALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYD 412

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI-KNEWQPTPLNCATAITMLLD 372
             MV  G  P+++T+N++   L K+ +       F EM+ K E  PT ++    I  L  
Sbjct: 413 -RMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGK 471

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE------------- 419
           A     A   +  +++ GI+P   +   L+  L   GR+ + ++  E             
Sbjct: 472 AGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQA 531

Query: 420 ----------------------EMLNRRILIYEVTMHKLKKAFYNESRSM 447
                                 EM+ R     EVT   L++ F    R++
Sbjct: 532 YSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRAL 581



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++ +++D LGK GR  + +   + M + G++    T+ S+  S   AG+  EA    + M
Sbjct: 461 SYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDM 520

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG-- 231
              GV  DV A ++L++ +       +    F   +K+   P+  ++ +L  G+   G  
Sbjct: 521 VKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRA 580

Query: 232 -NVEEANKTFGEMV 244
            ++E   + F + V
Sbjct: 581 LDLEAVKQHFSQGV 594


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 128/295 (43%), Gaps = 3/295 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+P + ++ +  C    ++EA    D M   G++ +V++  ++++A+    N        
Sbjct: 245 SVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVL 304

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
                +   P+  +F  L++G+  +G   EA   +  M+   E    +V+AY   +  L 
Sbjct: 305 AKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIR--EGVVPNVVAYNALMHGLC 362

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
             + + +A+     M+   C P ++ +S  +D   K  D   A ++W+  M+ HG  P+ 
Sbjct: 363 SKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWN-WMITHGCHPNV 421

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           + Y  + + L +N   ++       M      P  +   T I  L  +   + AI++++ 
Sbjct: 422 VAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQ 481

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           +  +G  P   + NELL  L    R  +     ++M +R I +  VT + +   +
Sbjct: 482 MGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGY 536



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 140/364 (38%), Gaps = 71/364 (19%)

Query: 98  AVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIF 154
           A+++F+     +    +P  + +M++ L      + +   ++ MK +G+  S   F S+ 
Sbjct: 59  ALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVI 118

Query: 155 DSYCGAGKYDEAVMSF-----------------------------------DVMSMHGVE 179
            SY  AG  ++A+ +F                                     M   G+E
Sbjct: 119 GSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGME 178

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANK 238
            +V   N LL A+C+  N+   A + L  +  K  DPD  S+  L+    K G V+EA +
Sbjct: 179 PNVFTYNILLKALCKN-NRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARE 237

Query: 239 -----------------------TFGEMVERFE------WNPEHVLAYETFLITLIRGKQ 269
                                  TF E  +  +       +P +V++Y T +  L     
Sbjct: 238 LAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDP-NVISYTTIINALSDAGN 296

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           V+ +L  L  M    C P L  F++ +        S  A+  WD  M+  G  P+ + YN
Sbjct: 297 VELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWD-RMIREGVVPNVVAYN 355

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
            +   L   + + +    F++M  N   P     +  I     A + + A E+WN+++ +
Sbjct: 356 ALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITH 415

Query: 390 GILP 393
           G  P
Sbjct: 416 GCHP 419



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 144/371 (38%), Gaps = 71/371 (19%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++  +++ L   G  E     +  M   G   +L TF S+   +   G   EA+  +D M
Sbjct: 283 SYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRM 342

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              GV  +VVA N+L+  +C + +    A+   N+++     P+  +++ L++G+ K G+
Sbjct: 343 IREGVVPNVVAYNALMHGLCSKRS-LGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGD 401

Query: 233 VEEANKTFGEMVE---------------------------------RFEWNPEHVLAYET 259
           ++ A++ +  M+                                  + E  P + + + T
Sbjct: 402 LDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNT 461

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK------------------ 301
           F+  L    +VD A+K    M    CFP    ++  LD L+K                  
Sbjct: 462 FIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRG 521

Query: 302 --LNDSTHAVQLWDIM--------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
             LN  T+   ++                 MV  G  PD++T N++ +   K  +V+   
Sbjct: 522 IELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAI 581

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           +    +   +W P  +   + I+ +      E AI     +L  GI P  A+ N L+  L
Sbjct: 582 QLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641

Query: 406 -RNLGRLSDVR 415
             N+G    V+
Sbjct: 642 FSNMGHSGAVQ 652



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 101/239 (42%), Gaps = 40/239 (16%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+  MVDVL +N  F Q +  +  M+ E+   +  TF +     CG+G+ D A+  FD M
Sbjct: 423 AYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQM 482

Query: 174 S-----------------------------------MHGVEQDVVAVNSLLSAICRQENQ 198
                                                 G+E ++V  N+++   C     
Sbjct: 483 GNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYC-CAGM 541

Query: 199 TSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
              ALE L + V +   PD  +  I+++ + K+G V  A +   + +   +W+P+ ++AY
Sbjct: 542 LGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLM-DRLSAGKWHPD-IIAY 599

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
            + +  +     V+EA+ +LR M  E   P +  ++  +  L      + AVQ  D ++
Sbjct: 600 TSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFLDAVL 658


>gi|147767583|emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
          Length = 525

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 184/463 (39%), Gaps = 64/463 (13%)

Query: 34  RPTRPRFPTHLDAPYISSSARIICEILA--HASSDDIESALACTGIIPTPDLVHEVLQLS 91
           +P      T L +   S  A +I +IL   H     +ES+L   GI  +  LVH+ L   
Sbjct: 34  QPPDDALSTGLPSLQPSYDADLISKILLQHHNPFHAMESSLQLNGIALSTHLVHQTLLRL 93

Query: 92  YDSPSSAVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLP 148
            +    A+ FF WA      S    ++NL++D+L K  +F+  W  +  M ++ +  +  
Sbjct: 94  RNVSKIALSFFLWAKDQAHHSHDVVSYNLIIDILAKVRQFDVAWQFIIEMDQNSLEPTST 153

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN--SLLSAICRQENQTSRALEFL 206
           TF  +      AG   +AV +FD MS   VE+D  + +   LL  + +       A +  
Sbjct: 154 TFRILIRRSVSAGLTRQAVRAFDDMSCF-VEKDADSDDFCYLLDTLSKY-GYVKLASQIF 211

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           N+ K   + +   + IL+ GW K   V  A +  GEMVER      +V+ Y   L  + R
Sbjct: 212 NQRKFKFEANAKMYTILIYGWCKINRVSIAERLLGEMVER--GJXANVVTYNVLLNGICR 269

Query: 267 G----------KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL-WDI- 314
                      + + +A K L  M+     P +  +S    I++ +    H  +L  D  
Sbjct: 270 XASLHPDDRFERTIRDAEKVLDEMRQXGIEPDVTSYS----IVIHVYSRAHKPELTLDKL 325

Query: 315 -MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP--LNC-------- 363
            MM   G +P   TY  + +CL    R+ + E+   +M+K+   P+    NC        
Sbjct: 326 RMMKDKGIWPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEYRGR 385

Query: 364 --------------------------ATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
                                        + M +  +  EI  EIW+ +  +G  P   S
Sbjct: 386 KDSDNALRLYRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDS 445

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
              L+ GL    +  +   F  EM+ +  L  ++T   L +  
Sbjct: 446 YTLLIHGLCEKQKWKEACHFFVEMIEKGYLPQKITFETLYRGL 488



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 118/305 (38%), Gaps = 55/305 (18%)

Query: 119 MVDVLGKNGRFE---QMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           ++D L K G  +   Q++N  +   E        +  +   +C   +   A      M  
Sbjct: 194 LLDTLSKYGYVKLASQIFNQRKFKFEANA---KMYTILIYGWCKINRVSIAERLLGEMVE 250

Query: 176 HGVEQDVVAVNSLLSAICRQ---------ENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
            G+  +VV  N LL+ ICR          E     A + L+ +++  ++PD  S++I++ 
Sbjct: 251 RGJXANVVTYNVLLNGICRXASLHPDDRFERTIRDAEKVLDEMRQXGIEPDVTSYSIVIH 310

Query: 226 GWEKE-----------------------------------GNVEEANKTFGEMVERFEWN 250
            + +                                    G +E+A +   +MV+  +  
Sbjct: 311 VYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVVKCLCSCGRLEDAEELVSDMVK--DGV 368

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHAV 309
                 Y  F       K  D AL+  R MK E +C P +  ++  + + VKLN      
Sbjct: 369 SPSAATYNCFFKEYRGRKDSDNALRLYRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQ 428

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           ++WD M    GA PD  +Y ++   L + ++  E   FF EMI+  + P  +   T    
Sbjct: 429 EIWDDMKT-SGAGPDLDSYTLLIHGLCEKQKWKEACHFFVEMIEKGYLPQKITFETLYRG 487

Query: 370 LLDAD 374
           L+ +D
Sbjct: 488 LIQSD 492


>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
 gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 154/382 (40%), Gaps = 42/382 (10%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P LV  VL LS      A+DFF W+ R  R    P  + +M+DVL K    +     +R+
Sbjct: 50  PRLVCAVL-LSQSDERVALDFFFWSDRQWRYRHDPIVYCVMLDVLSKTKLCQGARRVLRL 108

Query: 139 MKEDGVLSLPT-FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M   G+   P  F  +  SY  AGK   A+    +M   G+E +++  N+ +  +    N
Sbjct: 109 MVRRGIQRTPQDFCCVMVSYSRAGKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLV-MAN 167

Query: 198 QTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEM------------- 243
              +AL FL R++ + + P+  ++  L++G+     VE+A +   EM             
Sbjct: 168 MLEKALRFLERMQLLGIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYY 227

Query: 244 ------------------VERFEWNP--EHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
                             +E+ E        + Y T +  L + +  DEAL+FLR  +  
Sbjct: 228 TVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKR 287

Query: 284 NCFPTLKF-FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
             F   K  +S  +D   K      A ++ + M    G  PD +TY  I     +   V 
Sbjct: 288 G-FQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFT-RGCIPDVVTYTAIINGFSQAGEVG 345

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +  K   +M K+  +P  ++    +  L        A E+     E    P   + + ++
Sbjct: 346 QARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVM 405

Query: 403 VGLRNLGRLSDVRRFAEEMLNR 424
            G R  G+LSD      EM+ +
Sbjct: 406 HGFRREGKLSDACDVVREMIGK 427



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 73/361 (20%), Positives = 155/361 (42%), Gaps = 26/361 (7%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++  ++  L KN R  ++ + +  M++  +L+   T+ ++    C     DEA+      
Sbjct: 225 SYYTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREA 284

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
              G + D V  ++++ + C+ E +  +A E +N +  +   PD  ++  ++ G+ + G 
Sbjct: 285 QKRGFQVDKVGYSAIVDSYCK-EGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGE 343

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V +A K   +M  +    P  V +Y  FL  L +     EA + ++  + +   P    +
Sbjct: 344 VGQARKMLQQMY-KHGCKPNTV-SYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITY 401

Query: 293 SNALDILV---KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
           S  +       KL+D+   V+     M+  G FP  +  N++ + L +  RV E +KF  
Sbjct: 402 SVVMHGFRREGKLSDACDVVR----EMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFME 457

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           E +        +N  T I      D+ E A+ + + +  +   P   +   ++  L   G
Sbjct: 458 ECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSNKHPDAVTYTTIIDALGKKG 517

Query: 410 RLSDVRRFAEEMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFDSLER-----RCKT 460
           R+ +      +ML + I    + Y   +H+     Y +   + D+ + L++      C+T
Sbjct: 518 RIEEATELTLKMLKKGIDPTPVTYRTVIHR-----YGQIGRVEDLLNLLDKMLTRQECRT 572

Query: 461 S 461
           +
Sbjct: 573 A 573


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 126/268 (47%), Gaps = 6/268 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++VD L K G  +   N + VM ++GV+ ++ T++S+ D YC   + ++A    + 
Sbjct: 279 YTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNT 338

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           +S  G   +  +  ++++  C+ +     AL   N ++ K + PD  ++  L++G  K G
Sbjct: 339 ISQMGAAPNAHSYCTMINGFCKIK-MVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSG 397

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            +  A +   EM +  +  P ++  Y   +  L +   VD+A+  ++ +K +   P +  
Sbjct: 398 RISYAWELVDEMHDNGQ--PANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYT 455

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           F+  +  L K+    +A  ++  ++   G   ++ TYN++   L K     E E    +M
Sbjct: 456 FNILIYGLCKVGRLKNAQDVFQDLLS-KGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKM 514

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIA 379
             N   P  +   T I  L   DE E A
Sbjct: 515 DDNGIIPDAVTYETLIQALFHKDENEKA 542



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 155/356 (43%), Gaps = 19/356 (5%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL---SLPTFASIFDSYCGAGKYD 164
           G  L  +++  +++ L K G        +R  K DG L   ++  + +I DS C      
Sbjct: 168 GFHLDQFSYGTLINGLCKIGETRTALQMLR--KIDGKLVKINVVMYNTIIDSLCKHKLVI 225

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           +A   +  M    +  DVV  ++L+   C           F   V K ++PD  +F IL+
Sbjct: 226 DAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILV 285

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +   KEGN++ A      M++  E    +V+ Y + +       QV++A   L  +    
Sbjct: 286 DALCKEGNLKGAKNMLVVMMK--EGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMG 343

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P    +   ++   K+     A+ L++ M  F G  PD +TYN + + L K+ R+   
Sbjct: 344 AAPNAHSYCTMINGFCKIKMVDEALSLFNDMQ-FKGIAPDKVTYNSLIDGLCKSGRISYA 402

Query: 345 EKFFHEMIKNEWQPTPL---NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            +   EM  N  QP  +   NC   I  L      + AI +   I + GI P   + N L
Sbjct: 403 WELVDEMHDN-GQPANIFTYNC--LIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNIL 459

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILI----YEVTMHKL-KKAFYNESRSMRDIFD 452
           + GL  +GRL + +   +++L++   +    Y + ++ L K+  ++E+ ++    D
Sbjct: 460 IYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMD 515



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 130/310 (41%), Gaps = 42/310 (13%)

Query: 149 TFASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           TF  + + YC   + + A  M   ++ M G E D +  N+L+  +C    +   AL F +
Sbjct: 105 TFNILINCYCHMAEMNFAFSMMAKILKM-GYEPDTITFNTLIKGLCLN-GKVKEALHFHD 162

Query: 208 RVKKI-VDPDGDSFAILLEGWEKEGNVEEA----NKTFGEMVE--RFEWNP------EHV 254
            V  +    D  S+  L+ G  K G    A     K  G++V+     +N       +H 
Sbjct: 163 HVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHK 222

Query: 255 L---AYETF-----------LIT---LIRG----KQVDEALKFLRVMKGENCFPTLKFFS 293
           L   AYE +           ++T   LI G     Q++EA    R M  +N  P    F+
Sbjct: 223 LVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFN 282

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE--CLIKNKRVHEVEKFFHEM 351
             +D L K  +   A  +  +MM   G  P+ +TY+ + +  CL+   +V++ +   + +
Sbjct: 283 ILVDALCKEGNLKGAKNMLVVMMK-EGVMPNVVTYSSLMDGYCLV--NQVNKAKHVLNTI 339

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
            +    P   +  T I         + A+ ++N +   GI P + + N L+ GL   GR+
Sbjct: 340 SQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRI 399

Query: 412 SDVRRFAEEM 421
           S      +EM
Sbjct: 400 SYAWELVDEM 409



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 99/233 (42%), Gaps = 5/233 (2%)

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           +  HG+  D+   N L++  C    + + A   + ++ K+  +PD  +F  L++G    G
Sbjct: 94  LEFHGITPDIFTFNILINCYCHMA-EMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNG 152

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            V+EA   F + V    ++ +   +Y T +  L +  +   AL+ LR + G+     +  
Sbjct: 153 KVKEA-LHFHDHVLALGFHLDQ-FSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVM 210

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +D L K      A +L+   M+     PD +T++ +        ++ E    F EM
Sbjct: 211 YNTIIDSLCKHKLVIDAYELYS-QMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREM 269

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
           +     P        +  L      + A  +   +++ G++P   + + L+ G
Sbjct: 270 VLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDG 322



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 3/141 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           GQ  + + +N ++D L KN   +Q    V+ +K+ G+   + TF  +    C  G+   A
Sbjct: 413 GQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNA 472

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLE 225
              F  +   G   +    N +++ +C+ E     A   L+++    + PD  ++  L++
Sbjct: 473 QDVFQDLLSKGYSVNAWTYNIMVNGLCK-EGLFDEAEALLSKMDDNGIIPDAVTYETLIQ 531

Query: 226 GWEKEGNVEEANKTFGEMVER 246
               +   E+A K   EM+ R
Sbjct: 532 ALFHKDENEKAEKLLREMIAR 552


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 167/373 (44%), Gaps = 19/373 (5%)

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPY-AWNLMVDVLGKNGRFEQMWNA 135
           I+ TP  + ++L+L  D P+    F R  G+      +  + + ++ LG  G+F+ +   
Sbjct: 75  ILITPVQLCKLLELPLDVPTLLEIFERVGGQKGYCHTFDVYYVFINKLGAIGKFKLIDKL 134

Query: 136 VRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAIC 193
           +  MKE+G++   + F  I   Y  AG+  +A+ +  D+ +++  E    + + +L  + 
Sbjct: 135 LMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILV 194

Query: 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
                      F + + K V P   +F I+++       V+ A     +M +     P  
Sbjct: 195 TGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKH-GCVPNS 253

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           ++ Y+T +  L +  QV EALK L  M    C P ++ F++ +  L K+N    A +L D
Sbjct: 254 IV-YQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVD 312

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA--TAITMLL 371
             M+  G +PD++TY  +   L +  +++E  K   ++      P P N    T I   +
Sbjct: 313 -RMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKI------PCPNNAILNTLINGYV 365

Query: 372 DADEPEIAIEIWNYILEN-GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RI 426
            + + + A    N  + N G  P   + N L+ GL   G LS  R    EM  R     +
Sbjct: 366 MSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNV 425

Query: 427 LIYEVTMHKLKKA 439
           + Y + ++ L KA
Sbjct: 426 ITYAILVNGLCKA 438



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 125/285 (43%), Gaps = 10/285 (3%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + RG  ++   +N ++  L +  +     N +  M   G    L T+ S+    C   + 
Sbjct: 452 SARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRI 511

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAI 222
           DEA   F  M + G   + V  N+L+ A+ R+     +AL  +N  + +    D  ++  
Sbjct: 512 DEAFRLFHNMLLDGAVANNVTYNTLIHALLRR-GAFQKALTLVNDMLFRGCTLDKITYNG 570

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++ + K GN+E+  + + +M+   +      ++    +  L +  +VD A +FLR    
Sbjct: 571 LIKAFCKVGNIEKGLELYEQMI--MDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAIN 628

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
               P +  +++ L+ L K+     A+ L+D + V  G  PD+ TYN       K   V+
Sbjct: 629 RGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQV-EGVRPDAFTYNTFISWQCKEGMVN 687

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE----IAIEIW 383
           +   FF+  I+N + P+ L     +  LL     E    +  E+W
Sbjct: 688 DACSFFYRGIENGFVPSNLTWNVLVYTLLKQSNQENNFFVLDELW 732



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 124/302 (41%), Gaps = 41/302 (13%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N+++  L K G      + V  M   G   ++ T+A + +  C AG  +EA +    
Sbjct: 391 FTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHE 450

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           MS  G+  + V  N L+ A+CR+E +   AL  L+ +  K   PD  ++  L+ G  K  
Sbjct: 451 MSARGLTINSVIYNCLICALCRKE-KVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVD 509

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++EA + F  M+   +    + + Y T +  L+R     +AL  +              
Sbjct: 510 RIDEAFRLFHNML--LDGAVANNVTYNTLIHALLRRGAFQKALTLV-------------- 553

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
                      ND           M+F G   D +TYN + +   K   + +  + + +M
Sbjct: 554 -----------ND-----------MLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQM 591

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           I +      ++C   I  L    + + A E     +  G +P   + N +L GL  +GR+
Sbjct: 592 IMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRI 651

Query: 412 SD 413
            +
Sbjct: 652 KE 653



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 127/321 (39%), Gaps = 24/321 (7%)

Query: 131 QMWNAVRVMKEDGVLS----LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           Q+  A+++++E  V+     + TF  +    C   K  +A    D M + G   D +   
Sbjct: 268 QVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYG 327

Query: 187 SLLSAICR--QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244
            LL  +CR  + N+  + L       KI  P+      L+ G+   G ++EA     E +
Sbjct: 328 FLLHGLCRIGKLNEARKIL------IKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETM 381

Query: 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304
             F + P+ +  Y   +  L +   +  A   +  M    C P      N +   + +N 
Sbjct: 382 INFGFQPD-IFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEP------NVITYAILVNG 434

Query: 305 STHAVQLWDIMMVFHGAFPDSLTYN-MIFECLI----KNKRVHEVEKFFHEMIKNEWQPT 359
              A  L +  +V H      LT N +I+ CLI    + ++VH       EM     +P 
Sbjct: 435 LCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPD 494

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
                + I  L   D  + A  +++ +L +G +    + N L+  L   G          
Sbjct: 495 LFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVN 554

Query: 420 EMLNRRILIYEVTMHKLKKAF 440
           +ML R   + ++T + L KAF
Sbjct: 555 DMLFRGCTLDKITYNGLIKAF 575



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 108/274 (39%), Gaps = 43/274 (15%)

Query: 152 SIFDSYCGAGKYDEAVMSF--DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           ++ + Y  +G+  EA  SF  + M   G + D+   N L+  +C+ E   S A + +N +
Sbjct: 359 TLINGYVMSGQLKEA-QSFLNETMINFGFQPDIFTYNILMHGLCK-EGSLSFARDLVNEM 416

Query: 210 -KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            ++  +P+  ++AIL+ G  K G +EEA     EM  R      + + Y   +  L R +
Sbjct: 417 SRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSAR--GLTINSVIYNCLICALCRKE 474

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +V  AL  L  M  + C P                                    D  TY
Sbjct: 475 KVHVALNLLSEMCTKGCKP------------------------------------DLFTY 498

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N +   L K  R+ E  + FH M+ +      +   T I  LL     + A+ + N +L 
Sbjct: 499 NSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLF 558

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
            G    + + N L+     +G +       E+M+
Sbjct: 559 RGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMI 592


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 128/295 (43%), Gaps = 3/295 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+P + ++ +  C    ++EA    D M   G++ +V++  ++++A+    N        
Sbjct: 245 SVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVL 304

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
                +   P+  +F  L++G+  +G   EA   +  M+   E    +V+AY   +  L 
Sbjct: 305 AKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIR--EGVVPNVVAYNALMHGLC 362

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
             + + +A+     M+   C P ++ +S  +D   K  D   A ++W+  M+ HG  P+ 
Sbjct: 363 SKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWN-WMITHGCHPNV 421

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           + Y  + + L +N   ++       M      P  +   T I  L  +   + AI++++ 
Sbjct: 422 VAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQ 481

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           +  +G  P   + NELL  L    R  +     ++M +R I +  VT + +   +
Sbjct: 482 MGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGY 536



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 140/364 (38%), Gaps = 71/364 (19%)

Query: 98  AVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIF 154
           A+++F+     +    +P  + +M++ L      + +   ++ MK +G+  S   F S+ 
Sbjct: 59  ALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVI 118

Query: 155 DSYCGAGKYDEAVMSF-----------------------------------DVMSMHGVE 179
            SY  AG  ++A+ +F                                     M   G+E
Sbjct: 119 GSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGME 178

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANK 238
            +V   N LL A+C+  N+   A + L  +  K  DPD  S+  L+    K G V+EA +
Sbjct: 179 PNVFTYNILLKALCKN-NRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARE 237

Query: 239 -----------------------TFGEMVERFE------WNPEHVLAYETFLITLIRGKQ 269
                                  TF E  +  +       +P +V++Y T +  L     
Sbjct: 238 LAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDP-NVISYTTIINALSDAGN 296

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           V+ +L  L  M    C P L  F++ +        S  A+  WD  M+  G  P+ + YN
Sbjct: 297 VELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWD-RMIREGVVPNVVAYN 355

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
            +   L   + + +    F++M  N   P     +  I     A + + A E+WN+++ +
Sbjct: 356 ALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITH 415

Query: 390 GILP 393
           G  P
Sbjct: 416 GCHP 419



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 144/371 (38%), Gaps = 71/371 (19%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++  +++ L   G  E     +  M   G   +L TF S+   +   G   EA+  +D M
Sbjct: 283 SYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRM 342

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              GV  +VVA N+L+  +C + +    A+   N+++     P+  +++ L++G+ K G+
Sbjct: 343 IREGVVPNVVAYNALMHGLCSKRS-LGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGD 401

Query: 233 VEEANKTFGEMVE---------------------------------RFEWNPEHVLAYET 259
           ++ A++ +  M+                                  + E  P + + + T
Sbjct: 402 LDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNT 461

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK------------------ 301
           F+  L    +VD A+K    M    CFP    ++  LD L+K                  
Sbjct: 462 FIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRG 521

Query: 302 --LNDSTHAVQLWDIM--------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
             LN  T+   ++                 MV  G  PD++T N++ +   K  +V+   
Sbjct: 522 IELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAI 581

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           +    +   +W P  +   + I+ +      E AI     +L  GI P  A+ N L+  L
Sbjct: 582 QLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641

Query: 406 -RNLGRLSDVR 415
             N+G    V+
Sbjct: 642 FSNMGHSGAVQ 652



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 101/245 (41%), Gaps = 40/245 (16%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+  MVDVL +N  F Q +  +  M+ E+   +  TF +     CG+G+ D A+  FD M
Sbjct: 423 AYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQM 482

Query: 174 S-----------------------------------MHGVEQDVVAVNSLLSAICRQENQ 198
                                                 G+E ++V  N+++   C     
Sbjct: 483 GNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYC-CAGM 541

Query: 199 TSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
              ALE L + V +   PD  +  I+++ + K+G V  A +   + +   +W+P+ ++AY
Sbjct: 542 LGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLM-DRLSAGKWHPD-IIAY 599

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
            + +  +     V+EA+ +LR M  E   P +  ++  +  L      + AVQ  D   +
Sbjct: 600 TSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFLDASSI 659

Query: 318 FHGAF 322
               F
Sbjct: 660 MQPKF 664


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 121/303 (39%), Gaps = 7/303 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +    CG G   EA    D M MHG    VV    LL  +CR   Q   A   L R
Sbjct: 252 TFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTR-QADEAYAMLGR 310

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           V ++   +      ++ G   EG +  A + +  M  +    P  V  Y   +  L +  
Sbjct: 311 VPEV---NVVMLNTVIRGCLAEGKLARATELYEMMGSK--GCPPDVHTYNILMHGLCKLG 365

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +   A++ L  M+ + C P +  +S  L    +      A  + D  M   G   +S  Y
Sbjct: 366 RCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLD-QMSAKGFSMNSQGY 424

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N I   L K+ ++ E  +   EM     +P      T I  L + D+ + A  I+  +LE
Sbjct: 425 NGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLE 484

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 448
            G++    + N L+  L + GR  +  R A EM+     +  V+ + L KA   E    R
Sbjct: 485 EGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDR 544

Query: 449 DIF 451
            + 
Sbjct: 545 SMM 547



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 110/247 (44%), Gaps = 6/247 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N+++  L K GR       +  M+E G   ++ T++++  S+C  G +D+A    D 
Sbjct: 352 HTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQ 411

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           MS  G   +    N ++ A+  ++ +   A+  +  +K +   PD  ++  ++       
Sbjct: 412 MSAKGFSMNSQGYNGIIYAL-GKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNND 470

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            ++EA   FG ++E  E    + + Y T +  L+   +  E L+    M    C   +  
Sbjct: 471 QMDEAEHIFGNLLE--EGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVS 528

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +  L K  +   ++ L + MM   G  P++ +YNM+   L K  +V +  +   EM
Sbjct: 529 YNGLIKALCKEGNVDRSMMLLEEMMT-KGIKPNNFSYNMLINELCKAGKVRDALELSKEM 587

Query: 352 IKNEWQP 358
           +     P
Sbjct: 588 LNQGLTP 594



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/309 (19%), Positives = 126/309 (40%), Gaps = 42/309 (13%)

Query: 66  DDIESALACTGIIPTPDLVHEVLQLS-YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLG 124
           D++E       I+    L+H   +   +D   + +D  + + +G  ++   +N ++  LG
Sbjct: 375 DEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLD--QMSAKGFSMNSQGYNGIIYALG 432

Query: 125 KNGRFEQMWNAVRVMKEDG------------------------------------VLSLP 148
           K+G+ ++    V+ MK  G                                    V +  
Sbjct: 433 KDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGI 492

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++  +   +G++ E +   + M +HG   DVV+ N L+ A+C++ N     +     
Sbjct: 493 TYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEM 552

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K + P+  S+ +L+    K G V +A +   EM+ +    P+ ++ Y T +  L +  
Sbjct: 553 MTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQ-GLTPD-IVTYNTLINGLCKVG 610

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
               AL  L  +  EN  P +  ++  +    K+     A  L D   V  G  P+  T+
Sbjct: 611 WTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLD-KAVSGGIVPNERTW 669

Query: 329 NMIFECLIK 337
            M+ +  ++
Sbjct: 670 GMMVQNFVR 678


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 148/329 (44%), Gaps = 7/329 (2%)

Query: 101 FFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYC 158
           FF   G  G   + Y + ++++ L K G  +  ++    MK +G+  +L T+  + + YC
Sbjct: 219 FFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYC 278

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDG 217
           G GK   A   FD M   GVE +VV  N+L+  +CR+E +   A + ++++KK  V P+ 
Sbjct: 279 GEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREE-RVWEAEKLVDQMKKAAVSPNL 337

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++  L+ G+   GN+++A+    ++      +P  ++ Y   +    +           
Sbjct: 338 ITYNTLIGGFCDVGNLDKASSLLDQLKSN-GLSPS-LVTYNILIEGYSKAGNWKGVADLA 395

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
           R M+G    P+    +  +D  V+L +   A Q++  M  F G  PD   Y ++   L  
Sbjct: 396 REMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKF-GLVPDVYVYGVLIHGLCM 454

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
              + E  K F  M +   +P+ +   T I      D    A+ +   +   G++P  AS
Sbjct: 455 KGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVAS 514

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            + ++  L   G+  +     ++M+  ++
Sbjct: 515 YSSIIGVLCKDGKWEEAEVLLDKMIELQL 543



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 150/393 (38%), Gaps = 48/393 (12%)

Query: 98  AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156
           A+ FF     +G    P  +N ++  L ++  FE+ W     +KE     + +F  +   
Sbjct: 112 ALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNELKERVKFDVYSFGIMIKG 171

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV------- 209
            C  G  D++     ++   G+  +VV   +L+   C+      RA  F +++       
Sbjct: 172 CCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKN-GDIERARLFFDKMGEMGLVA 230

Query: 210 -------------KKIVDPDG----------------DSFAILLEGWEKEGNVEEANKTF 240
                        KK +  DG                 ++  L+  +  EG +  A   F
Sbjct: 231 NQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLF 290

Query: 241 GEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
            EM ER  E N   V+ Y T +  + R ++V EA K +  MK     P L  ++  +   
Sbjct: 291 DEMRERGVEAN---VVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGF 347

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
             + +   A  L D  +  +G  P  +TYN++ E   K      V     EM      P+
Sbjct: 348 CDVGNLDKASSLLD-QLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPS 406

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
            + C   I   +   E E A +I++ + + G++P       L+ GL   G + +  +   
Sbjct: 407 KVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFR 466

Query: 420 EMLNRRI----LIYEVTMHKLKKAFYNESRSMR 448
            M    +    +IY   +H   K   N  R++R
Sbjct: 467 SMGEMHVEPSDVIYNTMIHGYCKE-DNSYRALR 498


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 134/309 (43%), Gaps = 20/309 (6%)

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR-----ALEFLNRVKK----IVDP 215
           +A+  FD++  H     V A N LL+A+ R   + S       +   +R+ +     V P
Sbjct: 134 DALKLFDLLLPHARPASVTAFNHLLTAVSRASGRHSTLESQLGISLFDRMVRECSDKVAP 193

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           D  +++IL+  + + G +E     FG ++ +  W   H++ +   L  L   K++DEA  
Sbjct: 194 DRCTYSILIGCFCRMGRLEHGFAVFG-LILKTGWRVNHIV-FNQLLKGLCDAKRLDEATN 251

Query: 276 FLR-VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG--AFPDSLTYNMIF 332
            L   M    C P +  ++  +      N +  A++L  +M    G    PD ++YN + 
Sbjct: 252 ILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVI 311

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
               +  +V +    F +MI     P  +   T I  L  A   + A  ++  +L+ G+ 
Sbjct: 312 NGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVK 371

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMR 448
           P   + N L+ G  + G+  +V R  EEM    L     IY + +  L K         R
Sbjct: 372 PSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKN--GRCTEAR 429

Query: 449 DIFDSLERR 457
           +IFDS+ R+
Sbjct: 430 NIFDSVIRK 438



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 135/327 (41%), Gaps = 52/327 (15%)

Query: 114 YAWNLMVDVLGKNGRFEQMWN------------------AVRV---MKEDGVL-SLPTFA 151
           + + L++D L KNGR  +  N                  AV +   M++ G+  ++  + 
Sbjct: 410 FIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYG 469

Query: 152 SIFDSYCGAGKYDEAVMSFDVMSM-----------------------HGVEQDVVAVNSL 188
           ++ D+ C  G+ D+A++ F+ M                          G+  DVV  N+L
Sbjct: 470 ALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTL 529

Query: 189 LSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           +  +CR+    +  R +E + RV   V PD  S+  L++G    G  +EA K    MV  
Sbjct: 530 MCDLCREGRVMEAQRLIELMLRVG--VRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVS- 586

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P     Y T L    + +++D+A   LR M      P +  ++  L  L +    +
Sbjct: 587 IGLKPNE-FTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFS 645

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            A +L+ + M+      D  TYN+I   L KN  V E  K F  +     Q   +     
Sbjct: 646 EAKELY-LNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIM 704

Query: 367 ITMLLDADEPEIAIEIWNYILENGILP 393
           I  LL   + E A++++  I   G++P
Sbjct: 705 IGALLKGGKKEDAMDLFATISAYGLVP 731



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 127/310 (40%), Gaps = 7/310 (2%)

Query: 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGA 160
           F    +G RL    +N ++  L + GR  +    + +M   GV   + ++ ++ D +C  
Sbjct: 512 FEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLT 571

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G+ DEA    DVM   G++ +    N+LL   C+              +     PD  ++
Sbjct: 572 GRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTY 631

Query: 221 AILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
             +L G  + G   EA + +  M+  R +W+   +  Y   L  L +   VDEA K  + 
Sbjct: 632 NTILHGLFQTGRFSEAKELYLNMINSRTQWD---MYTYNIILNGLCKNNCVDEAFKMFQS 688

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           +  +     +  F+  +  L+K      A+ L+  +  + G  PD  TY +I E LIK  
Sbjct: 689 LCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAY-GLVPDVETYCLIAENLIKEG 747

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
            + E+   F  M +N   P        +   L   +   A    + + E     LEAS  
Sbjct: 748 SLEELGVLFSAMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKLDEKN-FSLEASTA 806

Query: 400 ELLVGLRNLG 409
            +L+ L + G
Sbjct: 807 SMLISLYSRG 816



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 142/365 (38%), Gaps = 43/365 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +   RG       +N ++D L K    ++     + M + GV  S  T+  +   Y  
Sbjct: 327 FLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLS 386

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            GK+ E V   + MS H +E D      LL  +C+    T     F + ++K + PD   
Sbjct: 387 TGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDA-- 444

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA-LKFLR 278
                        ++EA   F +M  R +    +V+ Y   +  L +  +VD+A LKF +
Sbjct: 445 ------------MIDEAVCIFDKM--RQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQ 490

Query: 279 VMKGENCFPTLKFFSNA-------LDILVKLNDSTHAVQLWDI--------------MMV 317
           ++       T++ +  A       LD  ++L+       + D+              +M+
Sbjct: 491 MINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELML 550

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
             G  PD ++YN + +      R  E  K    M+    +P      T +     A   +
Sbjct: 551 RVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRID 610

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTM 433
            A  +   +L NG  P   + N +L GL   GR S+ +     M+N R    +  Y + +
Sbjct: 611 DAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIIL 670

Query: 434 HKLKK 438
           + L K
Sbjct: 671 NGLCK 675



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 129/331 (38%), Gaps = 60/331 (18%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR-------------- 194
           T++ +   +C  G+ +     F ++   G   + +  N LL  +C               
Sbjct: 197 TYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEATNILLWR 256

Query: 195 ---------------------QENQTSRALEFLNRVKK----IVDPDGDSFAILLEGWEK 229
                                 EN+   ALE L+ +         PD  S+  ++ G+ +
Sbjct: 257 MPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFR 316

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           EG V++A   F +M++R    P  V+ Y T +  L + + VD A    + M  +   P+ 
Sbjct: 317 EGQVDKAYNLFLQMIDR--GIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSN 374

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             ++  +   +        V+L + M   H   PD   Y ++ + L KN R  E    F 
Sbjct: 375 GTYNCLIHGYLSTGKWKEVVRLLEEMST-HDLEPDCFIYALLLDYLCKNGRCTEARNIFD 433

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
            +I+   +P  +            DE   A+ I++ + + G+ P   +   L+  L  LG
Sbjct: 434 SVIRKGIKPDAM-----------IDE---AVCIFDKMRQQGLSPNVVNYGALIDALCKLG 479

Query: 410 RLSDVRRFAEEMLNRRILIYEV-TMHKLKKA 439
           R+ D      +M+N    +Y + T+ K +KA
Sbjct: 480 RVDDAILKFNQMINE---VYGLCTVEKWEKA 507


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 130/290 (44%), Gaps = 5/290 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
           A R  RL    +N ++  L K  +       + VM  +G   S+ T+ ++ D  C +G  
Sbjct: 2   ASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDL 61

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAI 222
           D A      M+  G   +VV   +L+  +C+   +   A++ + R ++   +PD  ++  
Sbjct: 62  DAAQALLQKMADAGCAPNVVTYTALIDGLCKAR-RPHDAIQTVKRMLRSGCEPDLVTYNS 120

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G      +++A     E++      P+ V+ Y TF+  L +  ++D+ L+ L  M  
Sbjct: 121 LIHGLCMANRMDDAGLVLQELMIESGRIPD-VVTYNTFISGLCKAGKLDKGLEMLEEMDR 179

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
               P +  F + +  L K N    A Q++  M+   G  PDSLTY+++ + L +  R+ 
Sbjct: 180 GGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLE-RGCVPDSLTYSIMLDNLSRANRLD 238

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
            VE+    M+K+         A  I  L+ A + E A   +   +E G +
Sbjct: 239 TVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCV 288



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 107/243 (44%), Gaps = 4/243 (1%)

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239
           D    N+L++ +C+   +   ALE L+       D    ++  L++G  K G+++ A   
Sbjct: 9   DAAIYNTLIAGLCKAR-KPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQAL 67

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
             +M +       +V+ Y   +  L + ++  +A++ ++ M    C P L  +++ +  L
Sbjct: 68  LQKMAD--AGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGL 125

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
              N    A  +   +M+  G  PD +TYN     L K  ++ +  +   EM +    P 
Sbjct: 126 CMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPD 185

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
            +   + I+ L  A+  + A +++  +LE G +P   + + +L  L    RL  V    E
Sbjct: 186 VVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLE 245

Query: 420 EML 422
            M+
Sbjct: 246 HMV 248



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 153/381 (40%), Gaps = 46/381 (12%)

Query: 95  PSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFAS 152
           P  A++     A  G   S   +  ++D L K+G  +     ++ M + G   ++ T+ +
Sbjct: 26  PRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTA 85

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL---EFLNRV 209
           + D  C A +  +A+ +   M   G E D+V  NSL+  +C         L   E +   
Sbjct: 86  LIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIES 145

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            +I  PD  ++   + G  K G +++  +   EM +R   +P+ V+ + + +  L +  +
Sbjct: 146 GRI--PDVVTYNTFISGLCKAGKLDKGLEMLEEM-DRGGISPD-VVTFCSIISGLCKANR 201

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           +D+A +  + M    C P    +S  LD L + N      ++ +  MV  G +  S TY 
Sbjct: 202 IDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLE-HMVKSGHYALSATYA 260

Query: 330 MIFECLIKNKRVHE--------------VEKFFHE---------------------MIKN 354
            +   LI+   +                +E + H                      MI++
Sbjct: 261 PLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIES 320

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL-PLEASANELLVGLRNLGRLSD 413
              P  L+    I  L  +   + A ++   +L++G   P     N L+ G    GRLS 
Sbjct: 321 GSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQ 380

Query: 414 VRRFAEEMLNRRILIYEVTMH 434
            ++  +EM  + I + +V  +
Sbjct: 381 AQQLLKEMKAKNICVPDVVTY 401



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 120/280 (42%), Gaps = 15/280 (5%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLN 207
           T+ +     C AGK D+ +   + M   G+  DVV   S++S +C+  N+   A + F  
Sbjct: 153 TYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCK-ANRIDDAFQVFKG 211

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANK--TFGEMVERFEWNPEHVLA--YETFLIT 263
            +++   PD  +++I+L+      N+  AN+  T  E++E    +  + L+  Y   +  
Sbjct: 212 MLERGCVPDSLTYSIMLD------NLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHA 265

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           LIR   ++ A           C   +   +  +  L +      A  +  + M+  G+ P
Sbjct: 266 LIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNIL-LGMIESGSLP 324

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEI 382
           + L+YN + + L K+  V +  K   +M+ +   +P  +   T I+    A     A ++
Sbjct: 325 NLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQL 384

Query: 383 WNYI-LENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
              +  +N  +P   + N ++ G    G L   +   EEM
Sbjct: 385 LKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEM 424


>gi|357121540|ref|XP_003562477.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Brachypodium distachyon]
          Length = 556

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 145/340 (42%), Gaps = 4/340 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDE 165
           RG   +   + ++VD L + G   ++      MK   V   +  ++++ ++YC  G    
Sbjct: 212 RGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAGDVYFYSAVINAYCRGGNVRR 271

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   FD    HGVE +     +L++  C+     +  +   +   + V  +   F  +++
Sbjct: 272 ASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIVFNTMID 331

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ + G VE+A +    M E+     + +  Y T    L R  ++++A K L +M  +  
Sbjct: 332 GYCRHGMVEKALEIKAVM-EKMGIELD-IYTYNTLACGLCRVNRMEDAKKLLHIMAEKGV 389

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    ++  + I  K  D   A +L+  M    G+ P  +TYN++ +  IKN  + E E
Sbjct: 390 APNYVSYTTLISIHAKEGDMVEARRLFRDME-GKGSRPSVVTYNVMIDGYIKNGSIREAE 448

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           +F  EM K    P     A  +       + ++A+ ++  +   G  P   +   L+ GL
Sbjct: 449 RFKKEMEKKGLVPDIYTYAGLVHGHCVNGKVDVALRLFEEMKHRGTKPNVVAYTALVSGL 508

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
              GR  +  +  ++ML   +   +     L  + + +SR
Sbjct: 509 AKEGRSEEAFQLYDDMLAAGLTPDDTLYSVLVGSLHTDSR 548



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 118/315 (37%), Gaps = 37/315 (11%)

Query: 148 PTFASIF-DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           P  AS+  D +C +G  D+A    D +  HGV  +    NSLL +  RQ N  + A    
Sbjct: 148 PLSASVVVDGFCKSGSVDDAHGLLDELPRHGVGLNACCYNSLLDSYTRQRNDDAVAGLLK 207

Query: 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
               + V+P   ++ IL++G  + G++ +    + EM  +       V  Y   +    R
Sbjct: 208 EMENRGVEPTVGTYTILVDGLSRAGDISKVEAVYDEMKRKNVAG--DVYFYSAVINAYCR 265

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM---------MV 317
           G  V  A +      G    P  + +   ++   K+     A  L   M         +V
Sbjct: 266 GGNVRRASEVFDECVGHGVEPNERTYGALINGFCKIGQIEAAEMLLADMQLRGVGHNQIV 325

Query: 318 F---------HGAFPDSL----------------TYNMIFECLIKNKRVHEVEKFFHEMI 352
           F         HG    +L                TYN +   L +  R+ + +K  H M 
Sbjct: 326 FNTMIDGYCRHGMVEKALEIKAVMEKMGIELDIYTYNTLACGLCRVNRMEDAKKLLHIMA 385

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +    P  ++  T I++     +   A  ++  +   G  P   + N ++ G    G + 
Sbjct: 386 EKGVAPNYVSYTTLISIHAKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKNGSIR 445

Query: 413 DVRRFAEEMLNRRIL 427
           +  RF +EM  + ++
Sbjct: 446 EAERFKKEMEKKGLV 460



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 3/126 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F    G+G R S   +N+M+D   KNG   +     + M++ G++  + T+A +   +C 
Sbjct: 416 FRDMEGKGSRPSVVTYNVMIDGYIKNGSIREAERFKKEMEKKGLVPDIYTYAGLVHGHCV 475

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGD 218
            GK D A+  F+ M   G + +VVA  +L+S + + E ++  A + + + +   + PD  
Sbjct: 476 NGKVDVALRLFEEMKHRGTKPNVVAYTALVSGLAK-EGRSEEAFQLYDDMLAAGLTPDDT 534

Query: 219 SFAILL 224
            +++L+
Sbjct: 535 LYSVLV 540


>gi|2827705|emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
          Length = 598

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 160/399 (40%), Gaps = 28/399 (7%)

Query: 46  APYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA 105
           A  +  S RI+ +   H+    +E AL  +G+   P L+  VL    D+ +    FF WA
Sbjct: 73  ASDVEKSYRILRKF--HSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWA 130

Query: 106 GRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAG 161
            +  R   S   +  MV +L K  +F  +W  +  M+++   ++    F  +   +  A 
Sbjct: 131 AKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASAD 190

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN---RVKKIVD---- 214
              +A+   D M   G E D      LL A+C+  +    A  F +   RV K+++    
Sbjct: 191 MVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRVGKMMEAKYV 250

Query: 215 ----------PDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLIT 263
                     PD   +  LL G+   G + +A     +M  R FE N      Y   +  
Sbjct: 251 LVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNAN---CYTVLIQA 307

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L +  +++EA+K    M+   C   +  ++  +    K         + D M +  G  P
Sbjct: 308 LCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDM-IKKGLMP 366

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
             LTY  I     K +   E  +   +M + E+ P        I +     E + A+ +W
Sbjct: 367 SELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLW 426

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
           N + ENG+ P   +   ++ GL + G L +     +EML
Sbjct: 427 NEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEML 465


>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
 gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g51965, mitochondrial; Flags: Precursor
 gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
           Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
           thaliana]
 gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
          Length = 650

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 131/292 (44%), Gaps = 38/292 (13%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE---DGVLSL---------- 147
           F R    G R + Y ++L++++L   G+  ++   V + K     G+ S           
Sbjct: 328 FSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGIYSYLVRTLSKLGH 387

Query: 148 --------------------PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187
                                ++ S+ +S CGAGK  EA+     +   GV  D +  N+
Sbjct: 388 VSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNT 447

Query: 188 LLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           + SA+ + + Q S   +   ++KK    PD  ++ IL+  + + G V+EA   F E+ ER
Sbjct: 448 VFSALGKLK-QISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEEL-ER 505

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
            +  P+ +++Y + +  L +   VDEA    + M+ +   P +  +S  ++   K     
Sbjct: 506 SDCKPD-IISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVE 564

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
            A  L++ M+V  G  P+ +TYN++ +CL KN R  E    + +M +    P
Sbjct: 565 MAYSLFEEMLV-KGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTP 615



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 94/427 (22%), Positives = 171/427 (40%), Gaps = 62/427 (14%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA------WNLMVDVLGKN------- 126
           TPD   E+L+ S +SP  AV+FF+       L PY+      +N ++ +L ++       
Sbjct: 98  TPDEASEILK-SLNSPLLAVEFFKLV---PSLCPYSQNDPFLYNRIILILSRSNLPDRFD 153

Query: 127 ----------------------------GRFEQMWNAVRVMKE-DGVLSLPTFASIFDSY 157
                                       G  E +   +R++K+ D  ++  T+  +  +Y
Sbjct: 154 RVRSILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCLRLVKKWDLKMNSFTYKCLLQAY 213

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
             +  Y +A   +  +   G + D+ A N LL A+ + E        F +  K+    D 
Sbjct: 214 LRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALAKDEKACQ---VFEDMKKRHCRRDE 270

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++ I++    + G  +EA   F EM+   E    +V+ Y T +  L +GK VD+A++  
Sbjct: 271 YTYTIMIRTMGRIGKCDEAVGLFNEMIT--EGLTLNVVGYNTLMQVLAKGKMVDKAIQVF 328

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M    C P    +S  L++LV        V+L  ++ +        + Y+ +   L K
Sbjct: 329 SRMVETGCRPNEYTYSLLLNLLVA---EGQLVRLDGVVEISKRYMTQGI-YSYLVRTLSK 384

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
              V E  + F +M     +    +  + +  L  A +   AIE+ + I E G++     
Sbjct: 385 LGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMM 444

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKAFYNESRSMRDIFDS 453
            N +   L  L ++S +    E+M        I  Y + +    +    E     +IF+ 
Sbjct: 445 YNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRV--GEVDEAINIFEE 502

Query: 454 LERR-CK 459
           LER  CK
Sbjct: 503 LERSDCK 509



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 160/423 (37%), Gaps = 74/423 (17%)

Query: 96  SSAVDFFRWAGRG-QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF 154
           S A D +    RG  +L  +A+N+++D L K+ +  Q++  ++  K        T+  + 
Sbjct: 220 SKAFDVYCEIRRGGHKLDIFAYNMLLDALAKDEKACQVFEDMK--KRHCRRDEYTYTIMI 277

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI--------------------CR 194
            +    GK DEAV  F+ M   G+  +VV  N+L+  +                    CR
Sbjct: 278 RTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCR 337

Query: 195 QENQT-SRALEFLNRVKKIVDPDG-----------DSFAILLEGWEKEGNVEEANKTFGE 242
               T S  L  L    ++V  DG             ++ L+    K G+V EA++ F +
Sbjct: 338 PNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCD 397

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M   F    E   +Y + L +L    +  EA++ L  +  +        ++     L KL
Sbjct: 398 MWS-FPVKGERD-SYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKL 455

Query: 303 NDSTHAVQL---------------WDIMMVFHGAF-------------------PDSLTY 328
              +H   L               ++I++   G                     PD ++Y
Sbjct: 456 KQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISY 515

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N +  CL KN  V E    F EM +    P  +  +T +      +  E+A  ++  +L 
Sbjct: 516 NSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLV 575

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL---IYEVTMHKLKKAFYNESR 445
            G  P   + N LL  L   GR ++      +M  + +    I    + +L+   + +SR
Sbjct: 576 KGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSITYTVLERLQSVSHGKSR 635

Query: 446 SMR 448
             R
Sbjct: 636 IRR 638



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 78/152 (51%), Gaps = 8/152 (5%)

Query: 79  PTPDL-VHEVLQLSYDSPSS---AVDFFRWAGRGQ-RLSPYAWNLMVDVLGKNGRFEQMW 133
           P+PD+  + +L  S+        A++ F    R   +    ++N +++ LGKNG  ++  
Sbjct: 473 PSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAH 532

Query: 134 NAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
              + M+E G+   + T++++ + +    + + A   F+ M + G + ++V  N LL  +
Sbjct: 533 VRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCL 592

Query: 193 CRQENQTSRALEFLNRVKKI-VDPDGDSFAIL 223
             +  +T+ A++  +++K+  + PD  ++ +L
Sbjct: 593 -EKNGRTAEAVDLYSKMKQQGLTPDSITYTVL 623


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 125/293 (42%), Gaps = 9/293 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++ L K GR  +  +   ++   G    + TF S+ D Y   GK ++A    D M 
Sbjct: 511 FNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMI 570

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+E DVV  ++LL   CR        + F   + K V P   ++ I+L G   +G   
Sbjct: 571 SVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTV 630

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
            A K   EM+E        +      L  L R    DEA+   + +   N    +   + 
Sbjct: 631 GAKKMCHEMIE--SGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINT 688

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +D + K+     A +L+D +    G  P++ TY ++   L+K   V E +  F  M K+
Sbjct: 689 MIDAMYKVRKREEANELFDSISA-TGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKS 747

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYI--LENGILPLEASANELLVGL 405
              P+       I +LL+  E   A    NY+  ++   + LEAS   L++ L
Sbjct: 748 GCAPSSRLLNNIIRVLLEKGEISKA---GNYLSKVDGKTISLEASTASLMLSL 797



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 132/325 (40%), Gaps = 19/325 (5%)

Query: 145 LSLPTFAS---IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           ++LPT  +   + D  C A +       F      G++ DV+  N LL  +C  +     
Sbjct: 114 VALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDA 173

Query: 202 ALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
               L+R+ ++ V+PD  S++ +L+   ++   + A      MV++      +V++Y T 
Sbjct: 174 VNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTV 233

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +    R  +V +A      M  +   P +  +S+ +D L K      A +L    M+ +G
Sbjct: 234 IHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKA-ELVLRQMISNG 292

Query: 321 AFPDSLTYNMIFECLIKNKRV----HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
             PD +TYN    C+I    +     E    F EM +    P    C + ++ L    + 
Sbjct: 293 FEPDKVTYN----CMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKS 348

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           + A E ++ +   G  P   + + LL G    G + D+      M    I+      + L
Sbjct: 349 KEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNIL 408

Query: 437 KKAFYNESRSMRD----IFDSLERR 457
             A+    R M D    IF  ++ R
Sbjct: 409 IDAY--GKRGMMDEAMLIFTQMQER 431



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 137/334 (41%), Gaps = 5/334 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N M+      G++++     R M   G++  + T  S   S C  GK  EA   FD M+
Sbjct: 300 YNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMA 359

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G + D+V  + LL      E      L   N ++   +  D   + IL++ + K G +
Sbjct: 360 AKGHKPDLVTYSVLLHGYA-AEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMM 418

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA   F +M ER    P+    Y T +    R  ++ +A+     M      P    ++
Sbjct: 419 DEAMLIFTQMQERGVM-PD-AWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYN 476

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
           + +       +   A +L   MM      P+++ +N I   L K  RV E +  F  +I 
Sbjct: 477 SLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIH 536

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
              +P  +   + I       + E A  + + ++  GI P   + + LL G    GR+ D
Sbjct: 537 IGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDD 596

Query: 414 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
                 EML++ +    +T   +    +N+ R++
Sbjct: 597 GLILFREMLSKGVKPTTITYGIILHGLFNDGRTV 630



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 130/320 (40%), Gaps = 16/320 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLS--LPTFASIFDSYCGAGKYDEAVMSFD 171
           +++ ++  L ++ R ++  + +  M K+ G  S  + ++ ++   +   G+  +A   F 
Sbjct: 192 SYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFH 251

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
            M   GV  DVV  +S + A+C+        L     +    +PD  ++  ++ G+   G
Sbjct: 252 EMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILG 311

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             +E    F EM  R    P+ +    +++ +L +  +  EA +F   M  +   P L  
Sbjct: 312 QWKETAGMFREMTRR-GLMPD-IFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVT 369

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVF-----HGAFPDSLTYNMIFECLIKNKRVHEVEK 346
           +S      V L+       + D++ +F     +G   D   YN++ +   K   + E   
Sbjct: 370 YS------VLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAML 423

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
            F +M +    P      T I           A++ +N ++  G+ P     N L+ G  
Sbjct: 424 IFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFC 483

Query: 407 NLGRLSDVRRFAEEMLNRRI 426
             G L   +    EM++R I
Sbjct: 484 MHGNLVKAKELISEMMSRGI 503


>gi|297821008|ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324225|gb|EFH54646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 766

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 165/357 (46%), Gaps = 15/357 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMK--EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           +N ++D L K GR ++    +  MK  E  V +  T+  + D YC AGK + A      M
Sbjct: 373 FNTLIDGLCKVGRLKEAEELLVRMKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRM 432

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G++ DVV VN+++  +CR        L F++  K+ V  +  ++  L+       N+
Sbjct: 433 KEDGIKPDVVTVNTIVGGMCRHHGLNMAVLFFMDMEKEGVKGNVVTYMTLIHACCSLSNI 492

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E+A   F +M+E    +P+  + Y   +  L + ++  +A++ +  ++ E  F +L    
Sbjct: 493 EKAMHWFDKMLEA-GCSPDAKIYY-ALISGLCQVRRDHDAIRVVEKLR-EGGF-SLDLL- 547

Query: 294 NALDILVKL-NDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            A ++L+ L  D  +A ++++++  M   G  PDS+TYN +     K+K    VE+   +
Sbjct: 548 -AYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDSITYNTLISFFGKHKDFESVERMMEQ 606

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI-LENGILPLEASANELLVGLRNLG 409
           M ++E  PT       I       E   A++++  + L + + P     N L+     LG
Sbjct: 607 MREDELDPTVATYGAVIEAYCSVGELGEALKLFKDMGLRSKVNPNTVIYNILINAFSKLG 666

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSL-ERRCKTSQM 463
                    EEM  + +     T + L K     N++ ++  + D + E+ C+ +Q+
Sbjct: 667 NFGQALSLKEEMKMKMVRPNVETYNALFKCLKEKNQAETLLKLMDEMVEQSCEPNQI 723



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 85/178 (47%), Gaps = 9/178 (5%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G +     +N ++   GK+  FE +   +  M+ED +  ++ T+ ++ ++YC  G+  EA
Sbjct: 576 GMKPDSITYNTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVIEAYCSVGELGEA 635

Query: 167 VMSFDVMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
           +  F  M +   V  + V  N L++A  +  N   +AL     +K K+V P+ +++  L 
Sbjct: 636 LKLFKDMGLRSKVNPNTVIYNILINAFSKLGN-FGQALSLKEEMKMKMVRPNVETYNALF 694

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +  +++   E   K   EMVE+    P  +    T  I + R    DE +K  + M+G
Sbjct: 695 KCLKEKNQAETLLKLMDEMVEQ-SCEPNQI----TMEILMERLSGSDELVKLRKFMQG 747



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/342 (18%), Positives = 131/342 (38%), Gaps = 40/342 (11%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++D   + G+ E     V  MKEDG+   + T  +I    C     + AV+ F  M
Sbjct: 408 TYNCLIDGYCRAGKLETAKEVVSRMKEDGIKPDVVTVNTIVGGMCRHHGLNMAVLFFMDM 467

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGW----- 227
              GV+ +VV   +L+ A C   N   +A+ + ++ ++    PD   +  L+ G      
Sbjct: 468 EKEGVKGNVVTYMTLIHACCSLSN-IEKAMHWFDKMLEAGCSPDAKIYYALISGLCQVRR 526

Query: 228 ----------EKEG--------------------NVEEANKTFGEMVERFEWNPEHVLAY 257
                      +EG                    N E+  +   +M E+    P+ +  Y
Sbjct: 527 DHDAIRVVEKLREGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDM-EKEGMKPDSI-TY 584

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
            T +    + K  +   + +  M+ +   PT+  +   ++    + +   A++L+  M +
Sbjct: 585 NTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVIEAYCSVGELGEALKLFKDMGL 644

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
                P+++ YN++     K     +      EM     +P           L + ++ E
Sbjct: 645 RSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLKEKNQAE 704

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
             +++ + ++E    P + +   L+  L     L  +R+F +
Sbjct: 705 TLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKLRKFMQ 746



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 123/296 (41%), Gaps = 40/296 (13%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS----IFDSYCGAGKYDEAVMSF-D 171
           N+++DVL +NG  +  +  +  M +   +  P   +    + + + G    +E ++    
Sbjct: 189 NVVIDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWKGRLLTEEKIIGLIS 248

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP-DGDSFAILLEGWEKE 230
             S HGV  + V +   +S++C+   +T+ A + L+ + K   P +   F  LL    + 
Sbjct: 249 RFSSHGVSPNSVWLTRFISSLCKNA-RTNAAWDILSDLMKNKAPLEAPPFNALLSCLGRN 307

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            N+   N    +M E  +  P+ V+     + TL + ++VDEAL+    M G        
Sbjct: 308 MNIGRMNALVLKMDE-MKIRPD-VVTLGILINTLCKSRRVDEALQVFEQMCG-------- 357

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
                     K  D  + ++             DS+ +N + + L K  R+ E E+    
Sbjct: 358 ----------KRTDDGNVIK------------ADSIHFNTLIDGLCKVGRLKEAEELLVR 395

Query: 351 M-IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           M ++    P  +     I     A + E A E+ + + E+GI P   + N ++ G+
Sbjct: 396 MKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDGIKPDVVTVNTIVGGM 451


>gi|255580386|ref|XP_002531020.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529395|gb|EEF31358.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 530

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/413 (22%), Positives = 167/413 (40%), Gaps = 65/413 (15%)

Query: 80  TPDLVHEVLQLSYDSPSS---AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWN 134
           + D V  VL   + + S+   A++FFR++ R    +P  +A+ + + +L +   FE+ W 
Sbjct: 91  STDFVENVLGRLFAAHSNGLKALEFFRFSLRHSHFNPSSFAFEMTLHILARMRYFEKAWE 150

Query: 135 AVRVMKEDG-----VLSLPTFASIFDSYCGAGKYDEAVMSFDVM-------SMHGVEQDV 182
              +M E G     +L+L +   +         Y++ + +F  M          G E+  
Sbjct: 151 ---LMMEIGKSHPSLLTLKSMGIMLSKIAKFQSYEDTLEAFKRMEKTVFVGKTFGTEE-- 205

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
              N LL A C Q  +   A     ++    +P+  +  ILL G++K  ++      + E
Sbjct: 206 --FNVLLQAFCSQR-EVKEARSVFQKMHDQFNPNTKTMNILLLGFKKARDITAMELFYHE 262

Query: 243 MVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS-------- 293
           +V R F+      L Y   +    +     + L+    M+ +NC PTL+  +        
Sbjct: 263 IVRRGFKATS---LTYNIRIDAYCKKGYFGDGLRIFEEMEKDNCPPTLETITTLIHGAGV 319

Query: 294 --------------------------NAL-DILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
                                     NAL   LVK  D   A++L D M   H    DS+
Sbjct: 320 ARNIHKARHLFDEIGKRNLKPDTGAYNALISSLVKCKDIESAMRLMDEMEEKHIG-RDSV 378

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           TY+ IF  L+K      V   +H MI  ++ P        +         ++ +  W Y+
Sbjct: 379 TYHTIFFGLMKLNDTEGVCDLYHRMISRDFVPKTRTVVMLMKFFCVNSRLDLGLAFWQYM 438

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
           L+ G  P   + + L+ GL + GRL +    +++ + R + + EV    L+++
Sbjct: 439 LDKGYCPHGHALDLLVTGLCSRGRLLEAYECSKQFVERGMRMSEVVYRMLERS 491


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 121/305 (39%), Gaps = 41/305 (13%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +++ L   GRFE  +   + M   G L S  T+  I   +C  G   +A++ FD M
Sbjct: 379 TYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKM 438

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G   +V+  N+L+   C+Q N  + A+  L  +K   + PD  ++  L+ G+ + G 
Sbjct: 439 LKAGSSPNVITYNTLIYGYCKQGN-LNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGK 497

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +E A   F  M+E    +P HV  Y   +       +VD+AL                  
Sbjct: 498 LEHATSLFYGMMEH-GISPNHV-TYTAIIDGYFNLAKVDDALALF--------------- 540

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
                              W   MV  G  P S TYN++     K   + E E F  +M+
Sbjct: 541 -------------------WK--MVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMV 579

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           K    P  +   + I  L       +A +I++ + +    P   + + L+ GL   GR  
Sbjct: 580 KQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAE 639

Query: 413 DVRRF 417
           D   +
Sbjct: 640 DAEMY 644



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 115/276 (41%), Gaps = 3/276 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           SL TF ++ +  C  G+  EA +    +  +    +     SL+   CR  N       F
Sbjct: 201 SLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMF 260

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              VK   DP+  +++ L+ G   EG +EEA     EMV++    P  V  Y   L++L 
Sbjct: 261 DRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQK-GIEPT-VYTYTIPLVSLC 318

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
                 EA++ L  MK   C P ++ F+  +  L +      A+ L+  M+   G  P +
Sbjct: 319 DAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLA-DGLVPTT 377

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TYN +   L    R       F  M+ +   P+       I       + + A+ I++ 
Sbjct: 378 VTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDK 437

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           +L+ G  P   + N L+ G    G L++  R  E M
Sbjct: 438 MLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIM 473



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 142/347 (40%), Gaps = 6/347 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCG 159
           + +    G R S   +N M+++L K GR ++    +  + + D   +  T+ S+   +C 
Sbjct: 190 YIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCR 249

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
               D A   FD M   G + + V  ++L++ +C  E +   A++ L   V+K ++P   
Sbjct: 250 NHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLC-SEGRLEEAMDMLEEMVQKGIEPTVY 308

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ I L      G   EA +  G+M +R      ++  +   +  L R  + + A+    
Sbjct: 309 TYTIPLVSLCDAGCSSEAVELLGKMKKR--GCVPNIQTFTALISGLSRDGKFEIAIGLYH 366

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M  +   PT   ++  ++ L        A  ++  M+  HG+ P + TYN I +C    
Sbjct: 367 KMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLS-HGSLPSTQTYNEIIKCFCLM 425

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
             + +    F +M+K    P  +   T I           A+ +   +  NG+ P   + 
Sbjct: 426 GDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTY 485

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            EL+ G    G+L         M+   I    VT   +   ++N ++
Sbjct: 486 TELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAK 532



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/290 (20%), Positives = 122/290 (42%), Gaps = 9/290 (3%)

Query: 76  GIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G +P+    +E+++   L  D   + V F +    G   +   +N ++    K G     
Sbjct: 407 GSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNA 466

Query: 133 WNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              + +MK +G+     T+  +   +   GK + A   F  M  HG+  + V   +++  
Sbjct: 467 MRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDG 526

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
                        F   V+    P   ++ +++ G+ K  ++ EA    G+MV++     
Sbjct: 527 YFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLL-- 584

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            +V+ Y +F+  L R  +   A K    M+  N FP L  +S+ +  L +   +  A ++
Sbjct: 585 PNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA-EM 643

Query: 312 WDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
           ++++  +  +G  P+  TY  + + L    R +E ++    M K   QP+
Sbjct: 644 YNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPS 693



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 114/266 (42%), Gaps = 5/266 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++++ +  C  G+ +EA+   + M   G+E  V      L ++C     +S A+E L +
Sbjct: 274 TYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLC-DAGCSSEAVELLGK 332

Query: 209 VKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +KK    P+  +F  L+ G  ++G  E A   + +M+   +      + Y   +  L   
Sbjct: 333 MKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLA--DGLVPTTVTYNALINQLCVE 390

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            + + A    + M      P+ + ++  +     + D   A+ ++D M+   G+ P+ +T
Sbjct: 391 GRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLK-AGSSPNVIT 449

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +     K   ++   +    M  N  +P        I+      + E A  ++  ++
Sbjct: 450 YNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMM 509

Query: 388 ENGILPLEASANELLVGLRNLGRLSD 413
           E+GI P   +   ++ G  NL ++ D
Sbjct: 510 EHGISPNHVTYTAIIDGYFNLAKVDD 535



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 107/263 (40%), Gaps = 5/263 (1%)

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD--SFAILLEGWEKEGNVEEANKTFGE 242
           V  L+   CR E +  R  +FL+ +    D      SF  LL    K   V+ A   + +
Sbjct: 133 VRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIK 192

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M+      P  +L + T +  L +  +V EA   +  +   + +P    +++ +    + 
Sbjct: 193 MLNS-GIRPS-LLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRN 250

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
           ++   A  ++D  MV  G  P+S+TY+ +   L    R+ E      EM++   +PT   
Sbjct: 251 HNLDLAFAMFD-RMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYT 309

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
               +  L DA     A+E+   + + G +P   +   L+ GL   G+         +ML
Sbjct: 310 YTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKML 369

Query: 423 NRRILIYEVTMHKLKKAFYNESR 445
              ++   VT + L      E R
Sbjct: 370 ADGLVPTTVTYNALINQLCVEGR 392



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 15/200 (7%)

Query: 114 YAWNLMVDVLGKNGRFE--QMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
           Y ++ ++  L + GR E  +M+N +  +   G   ++ T+ ++    CG G+  EA    
Sbjct: 623 YTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLV 682

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             M   G++       +LL   C+     S    F +            +  L+    KE
Sbjct: 683 VSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKE 742

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             +EEA   F  M+E+  WN + V A+   L  L++  + D  LK L VM+  NC  TL 
Sbjct: 743 NFIEEAQCIFQTMLEK-HWNSDEV-AWTVLLDGLLKEGETDLCLKLLHVMESRNC--TLN 798

Query: 291 FFS--------NALDILVKL 302
           F +        +ALD  +K+
Sbjct: 799 FQTYVMLARELSALDCAIKI 818


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 155/363 (42%), Gaps = 42/363 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F R +  G   +   +N ++++L +N R +  +  + +M  +G   ++ T+  +   YC 
Sbjct: 378 FHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCI 437

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
            G   +A++  + M   G   ++V  N+++   C   N TS AL  L+ ++     PD  
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTS-ALRILDLMRDGGCKPDEW 496

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  L+ G+ K   +E A   F EMV+     P  V  Y   +    + +++D A   L 
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDD-GLCPNEV-TYTALIDGYCKDEKLDTATSLLE 554

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            MK   C P ++ ++  +  L K N+ + A +L  +M +  G FP+ +TY  + + L KN
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVM-IEEGIFPNVVTYTAMIDGLCKN 613

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
                                                  +A+E++N ++E G LP   + 
Sbjct: 614 -----------------------------------GSTSLALEMFNKMIEQGCLPNLLTY 638

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRC 458
           + L+  L   G++ +      E+    ++  E+T  K+ +A Y  S  +   F+ L R  
Sbjct: 639 SSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEA-YIMSGKVEHAFNFLGRMI 697

Query: 459 KTS 461
           K  
Sbjct: 698 KAG 700



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 68/355 (19%), Positives = 150/355 (42%), Gaps = 22/355 (6%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFA--SIFDS 156
           + R    G + +   +N +++ L K+G    + +A  +MK+  +  +S  TF   S+   
Sbjct: 203 YHRMLSEGVQPNLLIYNAVINALCKDG---NVADAETIMKKVFESEMSPDTFTYTSMILG 259

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI---- 212
           +C     D A+  F+ M+  G E + V  ++L++ +C     + R  E  + ++++    
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC----DSGRVNEAFDLIREMILHG 315

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + P   +    +      G  E+A + F +M  + +    +V  Y   +  L     +  
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDM--KNKGCEPNVYTYTALISGLCVSGILKV 373

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A+     M  +  FP    ++  ++ILV+     +A  + + +M  +G  P+ +TYN + 
Sbjct: 374 AIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLN-LMGRNGCSPNIVTYNEMI 432

Query: 333 E--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +  C++ + +  +     + M++       +   T I    D+     A+ I + + + G
Sbjct: 433 KGYCILGDPK--KAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGG 490

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             P E S  EL+ G   + ++        EM++  +   EVT   L   +  + +
Sbjct: 491 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545



 Score = 45.8 bits (107), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           + AY   LI L R       +     M  E   P L  ++  ++ L K  +   A  +  
Sbjct: 180 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETI-- 237

Query: 314 IMMVFHGAF-PDSLTYNMIFECLIKNKRVHEVE---KFFHEMIKNEWQPTPLNCATAITM 369
           +  VF     PD+ TY  +   ++ + R H+++   + F++M K   +P  +  +T I  
Sbjct: 238 MKKVFESEMSPDTFTYTSM---ILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLING 294

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           L D+     A ++   ++ +GILP   +    ++ L ++G   D  R   +M N+
Sbjct: 295 LCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNK 349



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 52/271 (19%), Positives = 117/271 (43%), Gaps = 32/271 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEA-------- 166
           ++ ++  LG+ G+ E+  N    ++  G++    T+  + ++Y  +GK + A        
Sbjct: 638 YSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMI 697

Query: 167 -------VMSFDVMSMHGVEQDVVAVNSLLSAI------CRQENQTSR--ALEFLNRVKK 211
                  + ++ V+ + G++ + +  +  L+A+      C    QT+   A+  ++    
Sbjct: 698 KAGCQPTLWTYGVL-IKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLA 756

Query: 212 IVDPDGDSFAI---LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            +DP G S  +   L+      G   EAN+  G M+ +     +   AY + L +L+R +
Sbjct: 757 ELDP-GLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQE--AYNSLLCSLLRVR 813

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            VD A+   + M  + C   L  +   +  L +L+    A   ++ M++     PD +  
Sbjct: 814 NVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLM-RTWNPDDVVQ 872

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            ++ + L+++       +F H M    + P+
Sbjct: 873 AVLIDGLLRDGYKDLCMEFLHIMETRRYMPS 903


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 19/302 (6%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE-DGVLSLP---TFASIFDSYC 158
           +   +G +L+   +  +++ + K G       A++++K+ DG L+ P    +++I D+ C
Sbjct: 153 KLLAQGFQLNQVGYGTLINGVCKIG---DTRAAIKLLKKIDGRLTKPDVVMYSTIIDALC 209

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDG 217
                 EA   F  M++ G+  DVV  N+L+   C    +   A+  LN  V K ++PD 
Sbjct: 210 KYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFC-IVGKLKEAIGLLNVMVLKTINPDV 268

Query: 218 DSFAILLEGWEKEGNVEEANKTFG-------EMVERFEWNPEHVLAYETFLITLIRGKQV 270
            ++ IL++   KEG V+EA +          EM +R +  P  V+ Y + +  L +   +
Sbjct: 269 YTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQ--PADVITYSSLIDGLCKNGHL 326

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
           D A+     MK +   P +  F+  LD L K      A +++  ++   G   +  TYN+
Sbjct: 327 DRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLT-KGYHLNVYTYNV 385

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +     K   + E      +M  N   P      T I  L   DE + A ++   ++  G
Sbjct: 386 MINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 445

Query: 391 IL 392
           +L
Sbjct: 446 LL 447


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 155/363 (42%), Gaps = 42/363 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F R +  G   +   +N ++++L +N R +  +  + +M  +G   ++ T+  +   YC 
Sbjct: 378 FHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCI 437

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
            G   +A++  + M   G   ++V  N+++   C   N TS AL  L+ ++     PD  
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTS-ALRILDLMRDGGCKPDEW 496

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  L+ G+ K   +E A   F EMV+     P  V  Y   +    + +++D A   L 
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDD-GLCPNEV-TYTALIDGYCKDEKLDTATSLLE 554

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            MK   C P ++ ++  +  L K N+ + A +L  +M +  G FP+ +TY  + + L KN
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVM-IEEGIFPNVVTYTAMIDGLCKN 613

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
                                                  +A+E++N ++E G LP   + 
Sbjct: 614 -----------------------------------GSTSLALEMFNKMIEQGCLPNLLTY 638

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRC 458
           + L+  L   G++ +      E+    ++  E+T  K+ +A Y  S  +   F+ L R  
Sbjct: 639 SSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEA-YIMSGKVEHAFNFLGRMI 697

Query: 459 KTS 461
           K  
Sbjct: 698 KAG 700



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/355 (19%), Positives = 150/355 (42%), Gaps = 22/355 (6%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFA--SIFDS 156
           + R    G + +   +N +++ L K+G    + +A  +MK+  +  +S  TF   S+   
Sbjct: 203 YHRMLSEGVQPNLLIYNAVINALCKDG---NVADAETIMKKVFESEMSPDTFTYTSMILG 259

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI---- 212
           +C     D A+  F+ M+  G E + V  ++L++ +C     + R  E  + ++++    
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC----DSGRVNEAFDLIREMILHG 315

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + P   +    +      G  E+A + F +M  + +    +V  Y   +  L     +  
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDM--KNKGCEPNVYTYTALISGLCVSGLLKV 373

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A+     M  +  FP    ++  ++ILV+     +A  + + +M  +G  P+ +TYN + 
Sbjct: 374 AIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLN-LMGRNGCSPNIVTYNEMI 432

Query: 333 E--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +  C++ + +  +     + M++       +   T I    D+     A+ I + + + G
Sbjct: 433 KGYCILGDPK--KAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGG 490

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             P E S  EL+ G   + ++        EM++  +   EVT   L   +  + +
Sbjct: 491 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           + AY   LI L R       +     M  E   P L  ++  ++ L K  +   A  +  
Sbjct: 180 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETI-- 237

Query: 314 IMMVFHGAF-PDSLTYNMIFECLIKNKRVHEVE---KFFHEMIKNEWQPTPLNCATAITM 369
           +  VF     PD+ TY  +   ++ + R H+++   + F++M K   +P  +  +T I  
Sbjct: 238 MKKVFESEMSPDTFTYTSM---ILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLING 294

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           L D+     A ++   ++ +GILP   +    ++ L ++G   D  R   +M N+
Sbjct: 295 LCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNK 349



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 52/271 (19%), Positives = 117/271 (43%), Gaps = 32/271 (11%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEA-------- 166
           ++ ++  LG+ G+ E+  N    ++  G++    T+  + ++Y  +GK + A        
Sbjct: 638 YSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMI 697

Query: 167 -------VMSFDVMSMHGVEQDVVAVNSLLSAI------CRQENQTSR--ALEFLNRVKK 211
                  + ++ V+ + G++ + +  +  L+A+      C    QT+   A+  ++    
Sbjct: 698 KAGCQPTLWTYGVL-IKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLA 756

Query: 212 IVDPDGDSFAI---LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            +DP G S  +   L+      G   EAN+  G M+ +     +   AY + L +L+R +
Sbjct: 757 ELDP-GLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQE--AYNSLLCSLLRVR 813

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            VD A+   + M  + C   L  +   +  L +L+    A   ++ M++     PD +  
Sbjct: 814 NVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLM-RTWNPDDVVQ 872

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            ++ + L+++       +F H M    + P+
Sbjct: 873 AVLIDGLLRDGYKDLCMEFLHIMETRRYMPS 903


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 129/302 (42%), Gaps = 14/302 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDV 172
           +N ++  L K    ++  + +R M   G   LP   T+ +I D YC      EA      
Sbjct: 261 YNTLIRGLCKKSMPQEAMHYLRRMMNQG--CLPDDFTYNTIIDGYCKISMVQEATELLKD 318

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
               G   D V   SL++ +C  E    RALE  N  + K + PD   +  L++G   +G
Sbjct: 319 AVFKGFVPDQVTYCSLINGLC-AEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQG 377

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR--VMKGENCFPTL 289
            +  A +   EM E  E     +  Y   +  L +   + +A   +   +MKG    P +
Sbjct: 378 LILHALQVMNEMAE--EGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGY--LPDV 433

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             F+  +D   K      A+QL + M  + G  PD++TYN +   L K  +V+EV + F 
Sbjct: 434 FTFNTLIDGYCKRLKLDSALQLVERMWEY-GIAPDTITYNSVLNGLCKAGKVNEVNETFQ 492

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EMI     P P+     I     +++ E A ++   + + G+ P   S N L+ G    G
Sbjct: 493 EMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNG 552

Query: 410 RL 411
            L
Sbjct: 553 DL 554



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 141/310 (45%), Gaps = 7/310 (2%)

Query: 115 AWNLMVDVLGKNGR-FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+N ++  L K G   E      +V++    ++L T+       C AG+  EAV   D M
Sbjct: 191 AFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGM 250

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGN 232
             + V  DVV  N+L+  +C++ +    A+ +L R+  +   PD  ++  +++G+ K   
Sbjct: 251 RAYAVP-DVVTYNTLIRGLCKK-SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISM 308

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V+EA +   + V +  + P+ V  Y + +  L     V+ AL+     + +   P +  +
Sbjct: 309 VQEATELLKDAVFK-GFVPDQV-TYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVY 366

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           ++ +  L       HA+Q+ +  M   G  PD  TYN++   L K   + +     ++ I
Sbjct: 367 NSLVKGLCLQGLILHALQVMN-EMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAI 425

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
              + P      T I       + + A+++   + E GI P   + N +L GL   G+++
Sbjct: 426 MKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVN 485

Query: 413 DVRRFAEEML 422
           +V    +EM+
Sbjct: 486 EVNETFQEMI 495



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 145/337 (43%), Gaps = 15/337 (4%)

Query: 95  PSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LP--- 148
           P  A+ + R    +G     + +N ++D   K      +  A  ++K D V    +P   
Sbjct: 274 PQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCK---ISMVQEATELLK-DAVFKGFVPDQV 329

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ S+ +  C  G  + A+  F+     G++ D+V  NSL+  +C Q      AL+ +N 
Sbjct: 330 TYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ-GLILHALQVMNE 388

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + ++   PD  ++ I++ G  K GN+ +A     + + +  + P+ V  + T +    + 
Sbjct: 389 MAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMK-GYLPD-VFTFNTLIDGYCKR 446

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            ++D AL+ +  M      P    +++ L+ L K        + +   M+  G  P+ +T
Sbjct: 447 LKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQ-EMILKGCHPNPIT 505

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN++ E   ++ ++ E  K   +M +    P  ++  T I       + E A  ++  + 
Sbjct: 506 YNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLE 565

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           E G      + N L+        +    +  +EML++
Sbjct: 566 EKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSK 602



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 122/283 (43%), Gaps = 12/283 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LP---TFASIFDSYCGAGKYDEAVMSF 170
           +N++++ L K G          V+  D ++   LP   TF ++ D YC   K D A+   
Sbjct: 401 YNIVINGLCKMGNISD----ATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLV 456

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           + M  +G+  D +  NS+L+ +C+          F   + K   P+  ++ IL+E + + 
Sbjct: 457 ERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRS 516

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             +EEA+K   +M +    +P+ V ++ T +    R   ++ A    + ++ +    T  
Sbjct: 517 NKMEEASKVIVKMSQE-GLHPDAV-SFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATAD 574

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            F+  +       +   A +++D M+   G   DS TY ++ +   K   V        E
Sbjct: 575 TFNTLIGAFSGKLNMHMAEKIFDEMLS-KGHRADSYTYRVLIDGSCKTANVDRAYMHLVE 633

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           MIK  + P+       I  L        A+ I + +++ G++P
Sbjct: 634 MIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP 676



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 126/329 (38%), Gaps = 13/329 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A+N ++D L      +Q       M   GV   L T      S+C   +   A+     +
Sbjct: 90  AYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRAL 149

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G       V  L +         +R L F   +   V P+  +F  +L    K G+V
Sbjct: 150 PHRGAVAYCTVVCGLYA---HGHTHDARQL-FDQMLHTHVFPNLAAFNKVLHALCKRGDV 205

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            EA    G++++R      ++  Y  ++  L    ++ EA++ +  M+     P +  ++
Sbjct: 206 LEAGLLLGKVIQR--GMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAY-AVPDVVTYN 262

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +  L K +    A+     MM   G  PD  TYN I +   K   V E  +   + + 
Sbjct: 263 TLIRGLCKKSMPQEAMHYLRRMM-NQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVF 321

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG---- 409
             + P  +   + I  L    + E A+E++N     GI P     N L+ GL   G    
Sbjct: 322 KGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILH 381

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
            L  +   AEE  +  I  Y + ++ L K
Sbjct: 382 ALQVMNEMAEEGCHPDIQTYNIVINGLCK 410



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 95/257 (36%), Gaps = 8/257 (3%)

Query: 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
           P + +   +Y  AG+  +AV +F+ M +        A N+++ A+            ++ 
Sbjct: 54  PLYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVR 113

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +   V PD  +  I L  +        A +    +  R        +AY T +  L   
Sbjct: 114 MLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHR------GAVAYCTVVCGLYAH 167

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
               +A +    M   + FP L  F+  L  L K  D   A  L    ++  G   +  T
Sbjct: 168 GHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLG-KVIQRGMSINLFT 226

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN+    L +  R+ E  +    M +    P  +   T I  L     P+ A+     ++
Sbjct: 227 YNIWIRGLCEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMM 285

Query: 388 ENGILPLEASANELLVG 404
             G LP + + N ++ G
Sbjct: 286 NQGCLPDDFTYNTIIDG 302


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 155/363 (42%), Gaps = 42/363 (11%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F R +  G   +   +N ++++L +N R +  +  + +M  +G   ++ T+  +   YC 
Sbjct: 378 FHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCI 437

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGD 218
            G   +A++  + M   G   ++V  N+++   C   N TS AL  L+ ++     PD  
Sbjct: 438 LGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTS-ALRILDLMRDGGCKPDEW 496

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           S+  L+ G+ K   +E A   F EMV+     P  V  Y   +    + +++D A   L 
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDD-GLCPNEV-TYTALIDGYCKDEKLDTATSLLE 554

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            MK   C P ++ ++  +  L K N+ + A +L  +M +  G FP+ +TY  + + L KN
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVM-IEEGIFPNVVTYTAMIDGLCKN 613

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
                                                  +A+E++N ++E G LP   + 
Sbjct: 614 -----------------------------------GSTSLALEMFNKMIEQGCLPNLLTY 638

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRC 458
           + L+  L   G++ +      E+    ++  E+T  K+ +A Y  S  +   F+ L R  
Sbjct: 639 SSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEA-YIMSGKVEHAFNFLGRMI 697

Query: 459 KTS 461
           K  
Sbjct: 698 KAG 700



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 68/355 (19%), Positives = 150/355 (42%), Gaps = 22/355 (6%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE--DGVLSLPTFA--SIFDS 156
           + R    G + +   +N +++ L K+G    + +A  +MK+  +  +S  TF   S+   
Sbjct: 203 YHRMLSEGVQPNLLIYNAVINALCKDG---NVADAETIMKKVFESEMSPDTFTYTSMILG 259

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI---- 212
           +C     D A+  F+ M+  G E + V  ++L++ +C     + R  E  + ++++    
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC----DSGRVNEAFDLIREMILHG 315

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + P   +    +      G  E+A + F +M  + +    +V  Y   +  L     +  
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDM--KNKGCEPNVYTYTALISGLCVSGLLKV 373

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A+     M  +  FP    ++  ++ILV+     +A  + + +M  +G  P+ +TYN + 
Sbjct: 374 AIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLN-LMGRNGCSPNIVTYNEMI 432

Query: 333 E--CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +  C++ + +  +     + M++       +   T I    D+     A+ I + + + G
Sbjct: 433 KGYCILGDPK--KAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGG 490

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             P E S  EL+ G   + ++        EM++  +   EVT   L   +  + +
Sbjct: 491 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 9/175 (5%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           + AY   LI L R       +     M  E   P L  ++  ++ L K  +   A  +  
Sbjct: 180 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETI-- 237

Query: 314 IMMVFHGAF-PDSLTYNMIFECLIKNKRVHEVE---KFFHEMIKNEWQPTPLNCATAITM 369
           +  VF     PD+ TY  +   ++ + R H+++   + F++M K   +P  +  +T I  
Sbjct: 238 MKKVFESEMSPDTFTYTSM---ILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLING 294

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
           L D+     A ++   ++ +GILP   +    ++ L ++G   D  R   +M N+
Sbjct: 295 LCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNK 349



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 53/273 (19%), Positives = 118/273 (43%), Gaps = 36/273 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEA------ 166
           ++ ++  LG+ G+ E+  N    ++  G++  P   T+  + ++Y  +GK + A      
Sbjct: 638 YSSLIRALGQEGKVEEAENLFAELERHGLI--PDEITYVKMIEAYIMSGKVEHAFNFLGR 695

Query: 167 ---------VMSFDVMSMHGVEQDVVAVNSLLSAI------CRQENQTSR--ALEFLNRV 209
                    + ++ V+ + G++ + +  +  L+A+      C    QT+   A+  ++  
Sbjct: 696 MIKAGCQPTLWTYGVL-IKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAK 754

Query: 210 KKIVDPDGDSFAI---LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
              +DP G S  +   L+      G   EAN+  G M+ +     +   AY + L +L+R
Sbjct: 755 LAELDP-GLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQE--AYNSLLCSLLR 811

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
            + VD A+   + M  + C   L  +   +  L +L+    A   ++ M++     PD +
Sbjct: 812 VRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLM-RTWNPDDV 870

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
              ++ + L+++       +F H M    + P+
Sbjct: 871 VQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPS 903


>gi|195616298|gb|ACG29979.1| hypothetical protein [Zea mays]
          Length = 577

 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 150/329 (45%), Gaps = 24/329 (7%)

Query: 68  IESALACTGIIP-TPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLG 124
           ++S L+  G++P T   V  VL+   + P  A+ FFRWAGR  G   S  A+N M  VLG
Sbjct: 157 LDSRLSAIGLLPLTETSVTTVLRELREHPIKALAFFRWAGRQQGYTHSSVAYNAMARVLG 216

Query: 125 KNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG----VE 179
           +     + W+ +R  K  G+ + + T+  +  ++       EAV  +++M M G     +
Sbjct: 217 REESVPEFWDLIRETKAAGMHVDIDTYLKLSRNFQRRHMVREAVELYELM-MDGPFKPAQ 275

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEG----WEKEGNVE 234
           QD   +      I R     S  LE +NR V K     G     LL+G      + G  +
Sbjct: 276 QDGPII------IRRISLGPSPDLELVNRVVNKFEAVWGVKTKELLDGVHRALTRNGMFD 329

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA +    M  +    P++V  Y   +  L +  ++++A K L  M+ E C P LK ++ 
Sbjct: 330 EAAEIVQTMKAQGH-QPDNV-TYSQLVYGLCKADKLEDARKVLDEMEAEGCVPDLKTWTL 387

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI-K 353
            +       D   AVQ +   M+  G   D+   ++I + L  +++V E   FF EM+ K
Sbjct: 388 LIHGCCLAGDVDRAVQ-YLTEMIEKGLDADANLLDVILKGLCSHEKVEEAYSFFIEMVNK 446

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEI 382
            E +P    C   I  LL  ++ E A+ +
Sbjct: 447 TELRPWQGTCQHLINDLLRVNKLEEALSL 475



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 8/164 (4%)

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
            L +NG F++    V+ MK  G    P   T++ +    C A K ++A    D M   G 
Sbjct: 321 ALTRNGMFDEAAEIVQTMKAQG--HQPDNVTYSQLVYGLCKADKLEDARKVLDEMEAEGC 378

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
             D+     L+   C       RA+++L   ++K +D D +   ++L+G      VEEA 
Sbjct: 379 VPDLKTWTLLIHGCC-LAGDVDRAVQYLTEMIEKGLDADANLLDVILKGLCSHEKVEEAY 437

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
             F EMV + E  P      +  +  L+R  +++EAL  L+ MK
Sbjct: 438 SFFIEMVNKTELRPWQGTC-QHLINDLLRVNKLEEALSLLKTMK 480


>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 144/326 (44%), Gaps = 15/326 (4%)

Query: 128 RFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           +   ++ A ++M E  +++L     T+ ++ D+YC +   ++A+  +D M++  +  DVV
Sbjct: 64  KIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVV 123

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
               +++ +C+   +   A      ++++ V P+  S+A L++   KEGNV EA    G 
Sbjct: 124 TYTCIMNGLCKS-GKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGR 182

Query: 243 MVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           MV R   F+     V+ Y   +  L +    + A    +V+  E+  P    +S  +D  
Sbjct: 183 MVVRGIGFD-----VVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGH 237

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            KL D      L   M   H  FP+ + Y+ I +   K   ++E      +M++    P 
Sbjct: 238 CKLGDVNKGELLLQEMEEKH-IFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPN 296

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
                T I     AD+  IA++++  +   G+       +  +  L+  GR+ +     +
Sbjct: 297 VFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFK 356

Query: 420 EMLNRRILIYEVTMHKLKKAFYNESR 445
           +M++R +L   V    +   F+   +
Sbjct: 357 DMMSRGLLPDRVNYTSMMDGFFKAGK 382



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/346 (19%), Positives = 150/346 (43%), Gaps = 17/346 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +VD   K G   +  + +R M +  +L ++  + ++ D Y  A +   A+  F  M 
Sbjct: 265 YSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMK 324

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+E++   ++S ++ + R          F + + + + PD  ++  +++G+ K G   
Sbjct: 325 SRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKES 384

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQVDEALKFLRVMKGENCFPTLKFFS 293
           +A     EM E+   +   V+AY   +  L + GK   E+  F   M+     P    F+
Sbjct: 385 DAFNIAQEMTEK--SSGFDVVAYNVLINGLFKLGKYESES--FHTGMRQLGLAPDSATFN 440

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             ++   K  +  +A++L + M  + G  P+S+T N++ + L     + +     ++M+ 
Sbjct: 441 TMINAYCKEGNLGNALKLLNEMKSY-GLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLV 499

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
             + PTP      +     +   ++ +   + ++  G+    ++ N L+     LG +  
Sbjct: 500 MGFHPTPTTHKAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRR 559

Query: 414 VRRFAEEMLNRRIL----IYEVTMHK------LKKAFYNESRSMRD 449
                ++M+ + IL     Y   +H       LKKAF   S+ + +
Sbjct: 560 ATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTE 605



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/302 (18%), Positives = 114/302 (37%), Gaps = 64/302 (21%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L L T+ ++  ++C  G    A + F  M   G+  D++  N+L+   C   +       
Sbjct: 539 LDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAV 598

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
               + + V P+ +++ ILL G                                     L
Sbjct: 599 HSQMLTEGVSPNVETYNILLGG-------------------------------------L 621

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV----KLNDSTHAVQLWDIMMVFHG 320
              + + EA   +  MK     P     +   DILV    K+ +    V+L+   M+  G
Sbjct: 622 SAARLIKEAAGLVNQMKERGLVPN----ATTYDILVSGHGKIGNMKECVKLY-CEMITKG 676

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEP 376
             P + TYN++  C  K K++ + ++   EM   + +  P N +T   ++      + +P
Sbjct: 677 FVPKTRTYNVLISCFAKGKKMSQAKELMQEM---QVRGIPPNSSTYDILICGWYKLSKQP 733

Query: 377 EI-----------AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
           E+           A  ++  + E G +P E +   +   L   G+ +D +R   ++  ++
Sbjct: 734 ELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKKADAQRILNKLYKKK 793

Query: 426 IL 427
            +
Sbjct: 794 TV 795


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 125/317 (39%), Gaps = 46/317 (14%)

Query: 128 RFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           R E+  + V  M E G+   +  + +I DS C  G  + A+  FD M  +G+  DVV   
Sbjct: 157 RMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYT 216

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           SL++ +C                K+ + PD  +F  L++ + KEG   +A + + EM+ R
Sbjct: 217 SLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMI-R 275

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P ++  Y + +        VDEA +   +M+ + CF                    
Sbjct: 276 MSIAP-NIFTYTSLINGFCMEGCVDEARQMFYLMETKGCF-------------------- 314

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
                           PD + Y  +     K K+V +  K F+EM +       +   T 
Sbjct: 315 ----------------PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTL 358

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR-- 424
           I       +P +A E++++++  G+ P   + N LL  L   G++       E+M  R  
Sbjct: 359 IQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREM 418

Query: 425 -----RILIYEVTMHKL 436
                 I  Y V +H L
Sbjct: 419 DGVAPNIWTYNVLLHGL 435



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 115/294 (39%), Gaps = 40/294 (13%)

Query: 115 AWNLMVDVLGKNGRF---EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
            +N ++D   K G+F   E+++N   +++     ++ T+ S+ + +C  G  DEA   F 
Sbjct: 249 TFNALIDAFVKEGKFLDAEELYN--EMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFY 306

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           +M   G   DVVA  SL++  C+ +        F    +K +  +  ++  L++G+ + G
Sbjct: 307 LMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVG 366

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
               A + F  MV R    P ++  Y   L  L    +V +AL     M+          
Sbjct: 367 KPNVAQEVFSHMVSR--GVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKRE------- 417

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
                                       G  P+  TYN++   L  N ++ +    F +M
Sbjct: 418 --------------------------MDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDM 451

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
            K E     +     I  +  A + + A+ ++  +   G+ P   +   ++ GL
Sbjct: 452 RKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGL 505


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 137/314 (43%), Gaps = 4/314 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A N+++D L K GRF+ MW     M   G   ++ T+ ++ D  C  G + +A   FD M
Sbjct: 160 ACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEM 219

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
               +   VV    L+  +C +   +     F       + P+  ++  +++G+ K  +V
Sbjct: 220 IEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHV 279

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A + + EM+   +    +V+ +   +  L +  ++  A KFL  M      P +  ++
Sbjct: 280 KKALELYQEMLG--DGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYN 337

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D   K  + + A+ L    +  H   PD  TY+++ + L    R+ E +    EM K
Sbjct: 338 CLIDGYCKAGNLSEALSLHS-EIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKK 396

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
             + P  +   T I         E AIE+ + + E GI P   + + L+ G    G++  
Sbjct: 397 KGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEA 456

Query: 414 VRRFAEEMLNRRIL 427
                 EM+ + +L
Sbjct: 457 AMGLYTEMVIKGLL 470



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 130/309 (42%), Gaps = 26/309 (8%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +++++  L    R E+    ++ MK+ G L +  T+ ++ D YC  G  ++A+     
Sbjct: 369 FTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQ 428

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M+  G+E +++  ++L+   C+     +    +   V K + PD  ++  L++G  K+GN
Sbjct: 429 MTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGN 488

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            +EA +   EM E    +P +V      +  L +  ++ +A+K      G +   T    
Sbjct: 489 TKEAFRLHKEMQEA-GLHP-NVFTLSCLIDGLCKDGRISDAIKLFLAKTGTD---TTGSK 543

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +N LD  +                      P+ + Y  + + L  + R+ +  KFF +M 
Sbjct: 544 TNELDRSL--------------------CSPNHVMYTALIQGLCTDGRIFKASKFFSDMR 583

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
            +  +P    C   I     A      + +   IL+ GI+P  +    L  G    G L 
Sbjct: 584 CSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLK 643

Query: 413 DVRRFAEEM 421
              R +E++
Sbjct: 644 SALRCSEDL 652



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 122/318 (38%), Gaps = 7/318 (2%)

Query: 110 RLSPYAWNLMVDVLGKNGRFEQ-MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168
           + +P  + +++    + G  E+ +W      K D + ++     + D     G++D    
Sbjct: 123 KFTPNVFGVLIIAFSEMGLVEEALW---VYYKMDVLPAMQACNMVLDGLVKKGRFDTMWK 179

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            +  M   G   +VV   +L+   CRQ +       F   ++K + P    + IL+ G  
Sbjct: 180 VYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLC 239

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
            E  + EA   F  M  R      ++  Y T +    +   V +AL+  + M G+   P 
Sbjct: 240 GESRISEAESMFRTM--RNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPN 297

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           +  F   +D L K ++   A +   I M   G  P+   YN + +   K   + E     
Sbjct: 298 VVTFGILIDGLCKTDEMVSARKFL-IDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLH 356

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            E+ K+E  P     +  I  L   D  E A  +   + + G LP   + N L+ G    
Sbjct: 357 SEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKE 416

Query: 409 GRLSDVRRFAEEMLNRRI 426
           G +        +M  + I
Sbjct: 417 GNMEKAIEVCSQMTEKGI 434



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 112/261 (42%), Gaps = 3/261 (1%)

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           A N +L  + ++    +    + + V +   P+  ++  L++G  ++G+  +A + F EM
Sbjct: 160 ACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEM 219

Query: 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303
           +E+ +  P  V+ Y   +  L    ++ EA    R M+     P L  ++  +D   K+ 
Sbjct: 220 IEK-KIFPT-VVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIA 277

Query: 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363
               A++L+   M+  G  P+ +T+ ++ + L K   +    KF  +M      P     
Sbjct: 278 HVKKALELYQ-EMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVY 336

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
              I     A     A+ + + I ++ ILP   + + L+ GL  + R+ +     +EM  
Sbjct: 337 NCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKK 396

Query: 424 RRILIYEVTMHKLKKAFYNES 444
           +  L   VT + L   +  E 
Sbjct: 397 KGFLPNAVTYNTLIDGYCKEG 417


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 121/305 (39%), Gaps = 41/305 (13%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +++ L   GRFE  +   + M   G L S  T+  I   +C  G   +A++ FD M
Sbjct: 379 TYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKM 438

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
              G   +V+  N+L+   C+Q N  + A+  L  +K   + PD  ++  L+ G+ + G 
Sbjct: 439 LKAGSSPNVITYNTLIYGYCKQGN-LNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGK 497

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +E A   F  M+E    +P HV  Y   +       +VD+AL                  
Sbjct: 498 LEHATSLFYGMMEH-GISPNHV-TYTAIIDGYFNLAKVDDALALF--------------- 540

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
                              W   MV  G  P S TYN++     K   + E E F  +M+
Sbjct: 541 -------------------WK--MVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMV 579

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           K    P  +   + I  L       +A +I++ + +    P   + + L+ GL   GR  
Sbjct: 580 KQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAE 639

Query: 413 DVRRF 417
           D   +
Sbjct: 640 DAEMY 644



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 115/276 (41%), Gaps = 3/276 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           SL TF ++ +  C  G+  EA +    +  +    +     SL+   CR  N       F
Sbjct: 201 SLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMF 260

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              VK   DP+  +++ L+ G   EG +EEA     EMV++    P  V  Y   L++L 
Sbjct: 261 DRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQK-GIEPT-VYTYTIPLVSLC 318

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
                 EA++ L  MK   C P ++ F+  +  L +      A+ L+  M+   G  P +
Sbjct: 319 DAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLA-DGLVPTT 377

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TYN +   L    R       F  M+ +   P+       I       + + A+ I++ 
Sbjct: 378 VTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDK 437

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           +L+ G  P   + N L+ G    G L++  R  E M
Sbjct: 438 MLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIM 473



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 142/347 (40%), Gaps = 6/347 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCG 159
           + +    G R S   +N M+++L K GR ++    +  + + D   +  T+ S+   +C 
Sbjct: 190 YIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCR 249

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGD 218
               D A   FD M   G + + V  ++L++ +C  E +   A++ L   V+K ++P   
Sbjct: 250 NHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLC-SEGRLEEAMDMLEEMVQKGIEPTVY 308

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ I L      G   EA +  G+M +R      ++  +   +  L R  + + A+    
Sbjct: 309 TYTIPLVSLCDAGCSSEAVELLGKMKKR--GCVPNIQTFTALISGLSRDGKFEIAIGLYH 366

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M  +   PT   ++  ++ L        A  ++  M+  HG+ P + TYN I +C    
Sbjct: 367 KMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLS-HGSLPSTQTYNEIIKCFCLM 425

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
             + +    F +M+K    P  +   T I           A+ +   +  NG+ P   + 
Sbjct: 426 GDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTY 485

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            EL+ G    G+L         M+   I    VT   +   ++N ++
Sbjct: 486 TELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAK 532



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/290 (20%), Positives = 122/290 (42%), Gaps = 9/290 (3%)

Query: 76  GIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G +P+    +E+++   L  D   + V F +    G   +   +N ++    K G     
Sbjct: 407 GSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNA 466

Query: 133 WNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              + +MK +G+     T+  +   +   GK + A   F  M  HG+  + V   +++  
Sbjct: 467 MRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDG 526

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
                        F   V+    P   ++ +++ G+ K  ++ EA    G+MV++     
Sbjct: 527 YFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLL-- 584

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
            +V+ Y +F+  L R  +   A K    M+  N FP L  +S+ +  L +   +  A ++
Sbjct: 585 PNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA-EM 643

Query: 312 WDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
           ++++  +  +G  P+  TY  + + L    R +E ++    M K   QP+
Sbjct: 644 YNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPS 693



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 114/266 (42%), Gaps = 5/266 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T++++ +  C  G+ +EA+   + M   G+E  V      L ++C     +S A+E L +
Sbjct: 274 TYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLC-DAGCSSEAVELLGK 332

Query: 209 VKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +KK    P+  +F  L+ G  ++G  E A   + +M+   +      + Y   +  L   
Sbjct: 333 MKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLA--DGLVPTTVTYNALINQLCVE 390

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            + + A    + M      P+ + ++  +     + D   A+ ++D M+   G+ P+ +T
Sbjct: 391 GRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLK-AGSSPNVIT 449

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +     K   ++   +    M  N  +P        I+      + E A  ++  ++
Sbjct: 450 YNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMM 509

Query: 388 ENGILPLEASANELLVGLRNLGRLSD 413
           E+GI P   +   ++ G  NL ++ D
Sbjct: 510 EHGISPNHVTYTAIIDGYFNLAKVDD 535



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 107/263 (40%), Gaps = 5/263 (1%)

Query: 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD--SFAILLEGWEKEGNVEEANKTFGE 242
           V  L+   CR E +  R  +FL+ +    D      SF  LL    K   V+ A   + +
Sbjct: 133 VRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIK 192

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M+      P  +L + T +  L +  +V EA   +  +   + +P    +++ +    + 
Sbjct: 193 MLNS-GIRPS-LLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRN 250

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
           ++   A  ++D  MV  G  P+S+TY+ +   L    R+ E      EM++   +PT   
Sbjct: 251 HNLDLAFAMFD-RMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYT 309

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
               +  L DA     A+E+   + + G +P   +   L+ GL   G+         +ML
Sbjct: 310 YTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKML 369

Query: 423 NRRILIYEVTMHKLKKAFYNESR 445
              ++   VT + L      E R
Sbjct: 370 ADGLVPTTVTYNALINQLCVEGR 392



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 15/200 (7%)

Query: 114 YAWNLMVDVLGKNGRFE--QMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
           Y ++ ++  L + GR E  +M+N +  +   G   ++ T+ ++    CG G+  EA    
Sbjct: 623 YTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLV 682

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
             M   G++       +LL   C+     S    F +            +  L+    KE
Sbjct: 683 VSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKE 742

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
             +EEA   F  M+E+  WN + V+ +   L  L++  + D  LK L VM+  NC  TL 
Sbjct: 743 NFIEEAQCIFQTMLEK-HWNSDEVV-WTVLLDGLLKEGETDLCLKLLHVMESRNC--TLN 798

Query: 291 FFS--------NALDILVKL 302
           F +        +ALD  +K+
Sbjct: 799 FQTYVMLARELSALDCAIKI 818


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/352 (21%), Positives = 148/352 (42%), Gaps = 40/352 (11%)

Query: 92  YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPT 149
           Y     A D F   A +GQ    +++ +M++     G    M +   +M  DG+   + T
Sbjct: 341 YGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYT 400

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F+ +  +Y   G  D+A++ F+ M  HGV+ DVV   ++++A+CR         +F   +
Sbjct: 401 FSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMI 460

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
            + V PD  ++  L++G+   G++ +A +   E++                      G +
Sbjct: 461 DQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMN--------------------NGMR 500

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           +D                 + FFS+ ++ L KL     A  ++D + V  G  PD++ Y+
Sbjct: 501 LD-----------------IVFFSSIINNLCKLGRIMDAQNIFD-LTVNVGQHPDAVVYS 542

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
           M+ +      ++ +  + F  M+    +P  +   T +         +  + ++  +L+ 
Sbjct: 543 MLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQK 602

Query: 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
           GI P     N ++ GL   GR    +    EM    I I + T + + + F+
Sbjct: 603 GIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFF 654



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 145/316 (45%), Gaps = 12/316 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++++++  L   G+  Q  + +R+M E G +  P    + ++ D +   G  ++A   F
Sbjct: 187 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLF 246

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  D+V  +S++ A+C+      +A  FL + V K V PD  ++  L+ G+  
Sbjct: 247 KEMVQRGIPPDLVTYSSVVHALCKAR-AMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSS 305

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL--RVMKGENCFP 287
            G  +EA + F EM  R    P+ V+     + +L +  ++ EA        MKG+N  P
Sbjct: 306 TGQWKEAVRVFKEM-RRHSILPD-VVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQN--P 361

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
            +  +   L+             L+D+M+   G  PD  T++++ +       + +    
Sbjct: 362 DVFSYKIMLNGYATKGCLVDMTDLFDLML-GDGIAPDIYTFSVLIKAYANCGMLDKAMII 420

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           F+EM  +  +P  +   T I  L    + + A+E +N +++ G+ P + + + L+ G   
Sbjct: 421 FNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCT 480

Query: 408 LGRLSDVRRFAEEMLN 423
            G L   +    E++N
Sbjct: 481 HGSLLKAKELILEIMN 496



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 122/290 (42%), Gaps = 20/290 (6%)

Query: 185 VNSLLSAICRQENQTS------RALEFLNRVK------KIVDPDGDSFAILLEGWEKEGN 232
           +N  L+A+ R  +  +       A+   NR        +++ P   ++AIL++   +   
Sbjct: 71  LNGFLAALARAPSSAACGSGPALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHR 130

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKF 291
            E A   FG+++ R     + ++A    L      K+ DEAL  L     E  C P +  
Sbjct: 131 PELALAFFGQLL-RTGLRVDIIIA-NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFS 188

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEKFFH 349
           +S  L  L     S  A  L   MM   GA   PD + Y  + +C  K   V++    F 
Sbjct: 189 YSILLKSLCDQGKSGQADDLLR-MMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFK 247

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM++    P  +  ++ +  L  A     A      ++  G+LP   + N L+ G  + G
Sbjct: 248 EMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTG 307

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSLERR 457
           +  +  R  +EM    IL   VT++ L  +   Y + +  RD+FD++  +
Sbjct: 308 QWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMK 357



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 122/296 (41%), Gaps = 4/296 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLN 207
           T+A + D    A + + A+  F  +   G+  D++  N LL   C +  +T  AL+  L+
Sbjct: 117 TYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFC-EAKRTDEALDILLH 175

Query: 208 RVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           R  ++   PD  S++ILL+    +G   +A+     M E        V+AY T +    +
Sbjct: 176 RTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFK 235

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
              V++A    + M      P L  +S+ +  L K      A + +   MV  G  PD+ 
Sbjct: 236 EGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKA-EAFLRQMVNKGVLPDNW 294

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           TYN +        +  E  + F EM ++   P  +     +  L    + + A ++++ +
Sbjct: 295 TYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTM 354

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
              G  P   S   +L G    G L D+    + ML   I     T   L KA+ N
Sbjct: 355 AMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYAN 410


>gi|413951210|gb|AFW83859.1| hypothetical protein ZEAMMB73_953172 [Zea mays]
          Length = 598

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 150/329 (45%), Gaps = 24/329 (7%)

Query: 68  IESALACTGIIP-TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLG 124
           ++S L+  G++P T   V  VL+   + P  A+ FFRWAGR Q    S  A+N M  VLG
Sbjct: 178 LDSRLSAIGLLPLTETSVTTVLRELREHPIKALAFFRWAGRQQGYTHSSVAYNAMARVLG 237

Query: 125 KNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG----VE 179
           +     + W+ +R  K  G+ + + T+  +  ++       EAV  +++M M G     +
Sbjct: 238 REESVPEFWDLIRETKAAGMHVDIDTYLKLSRNFQRRHMVREAVELYELM-MDGPFKPAQ 296

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEG----WEKEGNVE 234
           QD   +      I R     S  LE +NR V K     G     LL+G      + G  +
Sbjct: 297 QDGPII------IRRISMGPSPDLELVNRVVNKFEAVWGVKTKELLDGVHRALTRNGMFD 350

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA +    M  +    P++V  Y   +  L +  ++++A K L  M+ E C P LK ++ 
Sbjct: 351 EAAEIVQTMKAQGH-QPDNV-TYSQLVYGLCKADKLEDARKVLDEMEAEGCVPDLKTWTL 408

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI-K 353
            +       D   AVQ +   M+  G   D+   ++I + L  +++V E   FF EM+ K
Sbjct: 409 LIHGCCLAGDVDRAVQ-YLTEMIEKGLDADANLLDVILKGLCSHEKVEEAYSFFIEMVDK 467

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEI 382
            E +P    C   I  LL  ++ E A+ +
Sbjct: 468 TELRPWQGTCQHLINDLLRVNKLEEALSL 496



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 8/164 (4%)

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
            L +NG F++    V+ MK  G    P   T++ +    C A K ++A    D M   G 
Sbjct: 342 ALTRNGMFDEAAEIVQTMKAQG--HQPDNVTYSQLVYGLCKADKLEDARKVLDEMEAEGC 399

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
             D+     L+   C       RA+++L   ++K +D D +   ++L+G      VEEA 
Sbjct: 400 VPDLKTWTLLIHGCC-LAGDVDRAVQYLTEMIEKGLDADANLLDVILKGLCSHEKVEEAY 458

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
             F EMV++ E  P      +  +  L+R  +++EAL  L+ MK
Sbjct: 459 SFFIEMVDKTELRPWQGTC-QHLINDLLRVNKLEEALSLLKTMK 501


>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Vitis vinifera]
          Length = 835

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 144/326 (44%), Gaps = 15/326 (4%)

Query: 128 RFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           +   ++ A ++M E  +++L     T+ ++ D+YC +   ++A+  +D M++  +  DVV
Sbjct: 64  KIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVV 123

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
               +++ +C+   +   A      ++++ V P+  S+A L++   KEGNV EA    G 
Sbjct: 124 TYTCIMNGLCKS-GKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGR 182

Query: 243 MVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           MV R   F+     V+ Y   +  L +    + A    +V+  E+  P    +S  +D  
Sbjct: 183 MVVRGIGFD-----VVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGH 237

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            KL D      L   M   H  FP+ + Y+ I +   K   ++E      +M++    P 
Sbjct: 238 CKLGDVNKGELLLQEMEEKH-IFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPN 296

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
                T I     AD+  IA++++  +   G+       +  +  L+  GR+ +     +
Sbjct: 297 VFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFK 356

Query: 420 EMLNRRILIYEVTMHKLKKAFYNESR 445
           +M++R +L   V    +   F+   +
Sbjct: 357 DMMSRGLLPDRVNYTSMMDGFFKAGK 382



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 68/346 (19%), Positives = 151/346 (43%), Gaps = 17/346 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +VD   K G   +  + +R M +  +L ++  + ++ D Y  A +   A+  F  M 
Sbjct: 265 YSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMK 324

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+E++   ++S ++ + R          F + + + + PD  ++  +++G+ K G   
Sbjct: 325 SRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKES 384

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQVDEALKFLRVMKGENCFPTLKFFS 293
           +A     EM E+   +   V+AY   +  L + GK   E+  F   M+     P    F+
Sbjct: 385 DAFNIAQEMTEK--SSGFDVVAYNVLINGLFKLGKYESES--FHTGMRQLGLAPDSATFN 440

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             ++   K  +  +A++L + M  + G  P+S+T N++ + L     + +     ++M+ 
Sbjct: 441 TMINAYCKEGNLGNALKLLNEMKSY-GLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLV 499

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
             + PTP      +     +   ++ + + + ++  G+    ++ N L+     LG +  
Sbjct: 500 MGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRR 559

Query: 414 VRRFAEEMLNRRIL----IYEVTMH------KLKKAFYNESRSMRD 449
                ++M+ + IL     Y   +H       LKKAF   S+ + +
Sbjct: 560 ATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTE 605



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/302 (18%), Positives = 114/302 (37%), Gaps = 64/302 (21%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L L T+ ++  ++C  G    A + F  M   G+  D++  N+L+   C   +       
Sbjct: 539 LDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAV 598

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
               + + V P+ +++ ILL G                                     L
Sbjct: 599 HSQMLTEGVSPNVETYNILLGG-------------------------------------L 621

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV----KLNDSTHAVQLWDIMMVFHG 320
              + + EA   +  MK     P     +   DILV    K+ +    V+L+   M+  G
Sbjct: 622 SAARLIKEAAGLVNQMKERGLVPN----ATTYDILVSGHGKIGNMKECVKLY-CEMITKG 676

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEP 376
             P + TYN++  C  K K++ + ++   EM   + +  P N +T   ++      + +P
Sbjct: 677 FVPKTRTYNVLISCFAKGKKMSQAKELMQEM---QVRGIPPNSSTYDILICGWYKLSKQP 733

Query: 377 EI-----------AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
           E+           A  ++  + E G +P E +   +   L   G+ +D +R   ++  ++
Sbjct: 734 ELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKKADAQRILNKLYKKK 793

Query: 426 IL 427
            +
Sbjct: 794 TV 795


>gi|302811221|ref|XP_002987300.1| hypothetical protein SELMODRAFT_125836 [Selaginella moellendorffii]
 gi|300144935|gb|EFJ11615.1| hypothetical protein SELMODRAFT_125836 [Selaginella moellendorffii]
          Length = 511

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 145/330 (43%), Gaps = 27/330 (8%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMK-EDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
           S  ++N+++    K GR E      R MK +  V  + TF ++  S   AGK+ EA+   
Sbjct: 146 SSMSYNIVIAACVKRGRNEAAVELFREMKVKKRVPDIFTFNTVIQSLSKAGKFKEALDIV 205

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQEN--QTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
           D M       + +    L+  +C+ +   +    LE ++RV  +  PD      L+ G  
Sbjct: 206 DEMVWLQCSPNELTFGLLVHGLCKAKRALEAESVLEVMDRVGCV--PDVVLLTALISGHL 263

Query: 229 KEGNVEEANKTFGEMVERFE-WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287
           KEG V++A++ F  M+   + W+  ++  +   +  L +  +V EA   +R M+ E    
Sbjct: 264 KEGRVDDASRLFERMLSGGQRWSKPNLRTFNIMIHGLCKANKVGEADALVRRMEDECGVA 323

Query: 288 TLKF-FSNALDILVKLNDSTHAV-QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
             +F F+  +D   K  DS  A  QL+  M  F G  PDS+T+ ++     K +R+HE  
Sbjct: 324 PDEFTFNTIIDGHFKAGDSKGAFKQLFQEMSRF-GCHPDSVTFTILVSESCKQRRIHEAL 382

Query: 346 KFFHEMIKNEWQPTP--------LNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
           +   +M KN+    P        L C     +  D    E   + W  + E      +A 
Sbjct: 383 ELVEQMTKNKGGCAPDTLSFNALLGC-----LCCDGRLEEAVAKFWGEMRERRECWPDAV 437

Query: 398 ANELLVGLRNLGRLSDVR---RFAEEMLNR 424
            + LLV  R   +  ++    R  +EML+R
Sbjct: 438 THALLV--RQCCKQRNIELACRIVDEMLHR 465



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 127/312 (40%), Gaps = 20/312 (6%)

Query: 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           M+    L + T   + DS C  G  D+A      M   G   D V  NSLL  + +  N+
Sbjct: 1   MQSIACLDVKTCNIVVDSLCKGGLVDDAAELVHGMMDKGPYPDTVTCNSLLDGLFKV-NK 59

Query: 199 TSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
              A++   ++ +  V  D  ++ ILL G  K G ++EA +     +   E    H L Y
Sbjct: 60  VEHAMKLYEKMSRSFVKADAFTYNILLHGLCKGGRIQEACQKLSAALRDREAPVRHELLY 119

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
           E  +  L +  + D A+   R MK     P+   ++  +   VK   +  AV+L+  M V
Sbjct: 120 EALIGGLCKVGKYDHAMAVFRKMK----LPSSMSYNIVIAACVKRGRNEAAVELFREMKV 175

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD--- 374
                PD  T+N + + L K  +  E      EM+  +  P  L     +  L  A    
Sbjct: 176 -KKRVPDIFTFNTVIQSLSKAGKFKEALDIVDEMVWLQCSPNELTFGLLVHGLCKAKRAL 234

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR-------RIL 427
           E E  +E+ + +   G +P       L+ G    GR+ D  R  E ML+         + 
Sbjct: 235 EAESVLEVMDRV---GCVPDVVLLTALISGHLKEGRVDDASRLFERMLSGGQRWSKPNLR 291

Query: 428 IYEVTMHKLKKA 439
            + + +H L KA
Sbjct: 292 TFNIMIHGLCKA 303


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/361 (20%), Positives = 143/361 (39%), Gaps = 44/361 (12%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + + Y ++ ++    K G+     +    M  +G+  ++  + S+   YC  G+   A
Sbjct: 420 GIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNA 479

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
              +  M+  G+  +     +L+S +C           F   V+  V P+  ++ +L+EG
Sbjct: 480 FRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEG 539

Query: 227 WEKEGNVEEANKTFGEMVER------FEWNP----------------------------- 251
             KEGN   A +   EMVE+      + + P                             
Sbjct: 540 HCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLN 599

Query: 252 ------EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305
                  +V+ Y   +  L +   +D+A    R M   N  P    ++  LD L    + 
Sbjct: 600 EIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNI 659

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
             A+QL D+++   G   +++TYN++     K  R+ E  +    MI +   P  ++ +T
Sbjct: 660 EKAIQLHDVLL--EGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYST 717

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
            I       + + AI++W  +L  G+ P   + N L+ G    G L+      ++M+ R 
Sbjct: 718 IIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRG 777

Query: 426 I 426
           +
Sbjct: 778 V 778



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 140/330 (42%), Gaps = 12/330 (3%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV---MKEDGVLS-LPTFASIFDSYC 158
           R    G  LS   +N+ +  L KN R   +W AV +   +   G+ + + T+ ++    C
Sbjct: 240 RMESSGCDLSVATYNVFIRGLCKNQR---VWEAVEIKNLLSYKGLRADVGTYCTLVLGLC 296

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDG 217
              +++      + M   G      AV++L+  + R++     A + +N+VKK  V P  
Sbjct: 297 KVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGL-RKKGNIGSAFDLVNKVKKFGVAPSL 355

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
             +  L+    K+G ++EA   F  M  +  + P  V  Y   + +  +  ++D AL FL
Sbjct: 356 FVYNALINSMCKDGKLDEAESLFNNMGHKGLF-PNDV-TYSILIDSFCKRGKLDVALHFL 413

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M       T+  +S+ +    KL     A  L+D  M+ +G  P+ + Y  +     K
Sbjct: 414 GKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFD-EMIANGLKPNVVIYTSLISGYCK 472

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
              +H   + +HEM      P        I+ L  A+    A +++  ++E  ++P E +
Sbjct: 473 EGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVT 532

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
            N L+ G    G         +EM+ + ++
Sbjct: 533 YNVLIEGHCKEGNTVRAFELLDEMVEKGLV 562



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 127/307 (41%), Gaps = 45/307 (14%)

Query: 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           +VD L K G     ++ V  +K+ GV  SL  + ++ +S C  GK DEA   F+ M   G
Sbjct: 326 LVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKG 385

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEA 236
           +  + V  + L+ + C++  +   AL FL ++ ++ +      ++ L+ G  K G +  A
Sbjct: 386 LFPNDVTYSILIDSFCKR-GKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAA 444

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
              F EM+      P +V+ Y + +    +  ++  A +    M G+             
Sbjct: 445 KSLFDEMIAN-GLKP-NVVIYTSLISGYCKEGELHNAFRLYHEMTGK------------- 489

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
                                  G  P++ T+  +   L    R+ E  K F EM+  EW
Sbjct: 490 -----------------------GISPNTYTFTALISGLCHANRMAEANKLFGEMV--EW 524

Query: 357 QPTPLNCATAITMLLDADEPEI--AIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
              P      + +     E     A E+ + ++E G++P   +   L+ GL + GR+S+ 
Sbjct: 525 NVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEA 584

Query: 415 RRFAEEM 421
           R F  ++
Sbjct: 585 REFMNDL 591



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 141/343 (41%), Gaps = 6/343 (1%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G R   Y +  +V  L +   F +    +  M+  G  LS+ T+       C   +  EA
Sbjct: 210 GLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEA 269

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
           V   +++S  G+  DV    +L+  +C+ E +     E +N + +    P   + + L++
Sbjct: 270 VEIKNLLSYKGLRADVGTYCTLVLGLCKVE-EFEAGEEMMNEMIEFGFVPSEAAVSNLVD 328

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K+GN+  A     + V++F   P  +  Y   + ++ +  ++DEA      M  +  
Sbjct: 329 GLRKKGNIGSAFDLVNK-VKKFGVAPS-LFVYNALINSMCKDGKLDEAESLFNNMGHKGL 386

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
           FP    +S  +D   K      A+     M    G       Y+ +     K  ++   +
Sbjct: 387 FPNDVTYSILIDSFCKRGKLDVALHFLGKMTEV-GIKATVYPYSSLISGHCKLGKLRAAK 445

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             F EMI N  +P  +   + I+      E   A  +++ +   GI P   +   L+ GL
Sbjct: 446 SLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGL 505

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMR 448
            +  R+++  +   EM+   ++  EVT + L +    E  ++R
Sbjct: 506 CHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVR 548



 Score = 42.4 bits (98), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 78/200 (39%), Gaps = 36/200 (18%)

Query: 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
           + N    L ++  + T ++ ++  + L  +R+M      P ++  S  L+ L+++     
Sbjct: 139 KCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRM 198

Query: 308 AVQLWDIMMVFHGAFPDSL-----------------------------------TYNMIF 332
           A+ L+D  +V  G  PD                                     TYN+  
Sbjct: 199 ALHLFD-EIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFI 257

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
             L KN+RV E  +  + +     +       T +  L   +E E   E+ N ++E G +
Sbjct: 258 RGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFV 317

Query: 393 PLEASANELLVGLRNLGRLS 412
           P EA+ + L+ GLR  G + 
Sbjct: 318 PSEAAVSNLVDGLRKKGNIG 337


>gi|255661030|gb|ACU25684.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 376

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/339 (20%), Positives = 138/339 (40%), Gaps = 44/339 (12%)

Query: 110 RLSPYA--WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167
           ++SP A  +N M++   + GR +       +M  +   ++ +F  +     G G  D+A+
Sbjct: 20  KVSPDAVVYNAMLNGFFRAGRIKDCIELWELMGREXSQNVVSFNIMMRGLFGNGDVDKAI 79

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLE 225
             +++M+  G  +D      L+   C+    N++ R LE       ++D    +++ ++ 
Sbjct: 80  SIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLEIAEEKGGVLDA--FAYSAMIN 137

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  KE  ++EA      M++       HV  Y T +   +   + D+A++  R M   NC
Sbjct: 138 GLCKEAKLDEAVSVLNGMIKNGGTPNAHV--YNTLINGFMGVSKFDDAIRVFREMGSTNC 195

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            PT+                                    +TYN +   L K +R  E  
Sbjct: 196 SPTV------------------------------------VTYNTLINGLCKGERFAEAY 219

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
               EM++  W+P  +  +  +  L    + E+A+++WN ++ NG+ P     N L+ GL
Sbjct: 220 DLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLNILIHGL 279

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
            ++G+         +M         VT + L + FY + 
Sbjct: 280 CSVGKTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKDG 318



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 151/335 (45%), Gaps = 14/335 (4%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDS 156
            ++ +   GR    +  ++N+M+  L  NG  ++  +   +M + G V    T+  + D 
Sbjct: 44  CIELWELMGREXSQNVVSFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDG 103

Query: 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDP 215
           +C  G  ++++   ++    G   D  A +++++ +C+ E +   A+  LN  +K    P
Sbjct: 104 FCKNGYINKSLRVLEIAEEKGGVLDAFAYSAMINGLCK-EAKLDEAVSVLNGMIKNGGTP 162

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           +   +  L+ G+      ++A + F EM      +P  V+ Y T +  L +G++  EA  
Sbjct: 163 NAHVYNTLINGFMGVSKFDDAIRVFREMGST-NCSPT-VVTYNTLINGLCKGERFAEAYD 220

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
            ++ M  +   P +  +S  +  L + +    A+QLW+  ++ +G  PD    N++   L
Sbjct: 221 LVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWN-QVISNGLKPDVQMLNILIHGL 279

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML----LDADEPEIAIEIWNYILENGI 391
               +       + +M  N W   P N  T  T++     D D    A+ IW  IL NG+
Sbjct: 280 CSVGKTQLALMLYFDM--NRWNCAP-NLVTHNTLMEGFYKDGDIRN-ALGIWARILRNGL 335

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            P   S N  L GL +  R+S    F ++ L ++I
Sbjct: 336 QPDIVSYNITLKGLCSCSRISFAILFLQDALAKKI 370



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 117/258 (45%), Gaps = 12/258 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDE 165
           +G  L  +A++ M++ L K  + ++  + +  M K  G  +   + ++ + + G  K+D+
Sbjct: 123 KGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFMGVSKFDD 182

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFA 221
           A+  F  M        VV  N+L++ +C+ E    R  E  + VK++++    P   +++
Sbjct: 183 AIRVFREMGSTNCSPTVVTYNTLINGLCKGE----RFAEAYDLVKEMLEKGWKPCVITYS 238

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +L++G  +   VE A + + +++      P+ V      +  L    +   AL     M 
Sbjct: 239 LLMKGLCQGHKVEMALQLWNQVISN-GLKPD-VQMLNILIHGLCSVGKTQLALMLYFDMN 296

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
             NC P L   +  ++   K  D  +A+ +W   ++ +G  PD ++YN+  + L    R+
Sbjct: 297 RWNCAPNLVTHNTLMEGFYKDGDIRNALGIW-ARILRNGLQPDIVSYNITLKGLCSCSRI 355

Query: 342 HEVEKFFHEMIKNEWQPT 359
                F  + +  +  P+
Sbjct: 356 SFAILFLQDALAKKIAPS 373


>gi|212722066|ref|NP_001132329.1| uncharacterized protein LOC100193771 [Zea mays]
 gi|194694094|gb|ACF81131.1| unknown [Zea mays]
          Length = 502

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 150/329 (45%), Gaps = 24/329 (7%)

Query: 68  IESALACTGIIP-TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLG 124
           ++S L+  G++P T   V  VL+   + P  A+ FFRWAGR Q    S  A+N M  VLG
Sbjct: 82  LDSRLSAIGLLPLTETSVTTVLRELREHPIKALAFFRWAGRQQGYTHSSVAYNAMARVLG 141

Query: 125 KNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG----VE 179
           +     + W+ +R  K  G+ + + T+  +  ++       EAV  +++M M G     +
Sbjct: 142 REESVPEFWDLIRETKAAGMHVDIDTYLKLSRNFQRRHMVREAVELYELM-MDGPFKPAQ 200

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEG----WEKEGNVE 234
           QD   +      I R     S  LE +NR V K     G     LL+G      + G  +
Sbjct: 201 QDGPII------IRRISMGPSPDLELVNRVVNKFEAVWGVKTKELLDGVHRALTRNGMFD 254

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA +    M  +    P++V  Y   +  L +  ++++A K L  M+ E C P LK ++ 
Sbjct: 255 EAAEIVQTMKAQGH-QPDNV-TYSQLVYGLCKADKLEDARKVLDEMEAEGCVPDLKTWTL 312

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI-K 353
            +       D   AVQ +   M+  G   D+   ++I + L  +++V E   FF EM+ K
Sbjct: 313 LIHGCCLAGDVDRAVQ-YLTEMIEKGLDADANLLDVILKGLCSHEKVEEAYSFFIEMVDK 371

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEI 382
            E +P    C   I  LL  ++ E A+ +
Sbjct: 372 TELRPWQGTCQHLINDLLRVNKLEEALSL 400



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 8/164 (4%)

Query: 122 VLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
            L +NG F++    V+ MK  G    P   T++ +    C A K ++A    D M   G 
Sbjct: 246 ALTRNGMFDEAAEIVQTMKAQG--HQPDNVTYSQLVYGLCKADKLEDARKVLDEMEAEGC 303

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
             D+     L+   C       RA+++L   ++K +D D +   ++L+G      VEEA 
Sbjct: 304 VPDLKTWTLLIHGCCLA-GDVDRAVQYLTEMIEKGLDADANLLDVILKGLCSHEKVEEAY 362

Query: 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
             F EMV++ E  P      +  +  L+R  +++EAL  L+ MK
Sbjct: 363 SFFIEMVDKTELRPWQGTC-QHLINDLLRVNKLEEALSLLKTMK 405


>gi|15219974|ref|NP_173709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806406|sp|P0C7Q9.1|PPR56_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g22960, mitochondrial; Flags: Precursor
 gi|332192194|gb|AEE30315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 718

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 145/353 (41%), Gaps = 48/353 (13%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-----------SLPTFASIFDS 156
           G  ++PY++N +++   K G F+  W     M   G+            +L  F  I D+
Sbjct: 303 GFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDA 362

Query: 157 ---------------------YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
                                Y   GK+ EA + FD +    +   +V  N+L+  +C  
Sbjct: 363 RELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCES 422

Query: 196 ENQTSRALEFLNRVK-----KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
            N     LE   R+K     +++ PD  ++  L++G+ K GN+  A + + EM+ R    
Sbjct: 423 GN-----LEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEML-RKGIK 476

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKG-ENCFPTLKFFSNALDILVKLNDSTHAV 309
           P+   AY T  +  +R    D+A +    M   ++  P L  ++  +D L K+ +   A+
Sbjct: 477 PDGY-AYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAI 535

Query: 310 QLW-DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 368
           +    I  V  G  PD +TY  +    ++N +       + EM++    P+ +     I 
Sbjct: 536 EFQRKIFRV--GLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIY 593

Query: 369 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
               A   E A +    + + G+ P   + N LL G+   G + +  R+  +M
Sbjct: 594 GHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKM 646



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 29/274 (10%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAI 222
           ++A   ++ M  HG+   V+  N++L + C +     R  + +L   ++ ++    ++ I
Sbjct: 220 NKASAVYETMIEHGIMPTVITFNTMLDS-CFKAGDLERVDKIWLEMKRRNIEFSEVTYNI 278

Query: 223 LLEGWEKEGNVEEANKTFGEM------VERFEWNPEHVLAYETFLITLIRG--KQ--VDE 272
           L+ G+ K G +EEA +  G+M      V  + +NP            LI G  KQ   D+
Sbjct: 279 LINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNP------------LIEGYCKQGLFDD 326

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A      M     +PT   ++  +  L        A +L   M     A PD ++YN + 
Sbjct: 327 AWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSM-----AAPDVVSYNTLM 381

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
              IK  +  E    F ++   +  P+ +   T I  L ++   E A  +   +    I 
Sbjct: 382 HGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIF 441

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           P   +   L+ G    G LS      +EML + I
Sbjct: 442 PDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGI 475



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 1/167 (0%)

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           + +++A      M      PT+  F+  LD   K  D     ++W  M   +  F + +T
Sbjct: 217 RMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSE-VT 275

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN++     KN ++ E  +F  +M ++ +  TP +    I         + A  + + +L
Sbjct: 276 YNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEML 335

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
             GI P  ++ N  +  L + GR+ D R     M    ++ Y   MH
Sbjct: 336 NAGIYPTTSTYNIYICALCDFGRIDDARELLSSMAAPDVVSYNTLMH 382



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 85/403 (21%), Positives = 163/403 (40%), Gaps = 32/403 (7%)

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWNLMVDVLGKNGRFEQMWN 134
           ++  P+L+  VL +    P  A  FF W  R    + S  A+  M+++L +N    + + 
Sbjct: 81  LLTDPNLLIRVLNMIRVKPEIAFRFFNWIQRQSDVKQSRQAFAAMLEILAENDLMSEAYL 140

Query: 135 AVRVMKEDGVLSLPTFA--SIFDS-------------YCGAGKYDEAVMSFDVMSMHGVE 179
                 + G+  +        FD              Y      ++ ++SF+ M   G  
Sbjct: 141 VAERSIDLGMHEIDDLLIDGSFDKLIALKLLDLLLWVYTKKSMAEKFLLSFEKMIRKGFL 200

Query: 180 QDVVAVNSLLSAI--CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237
             V   N +L  +   R  N+ S   E +  ++  + P   +F  +L+   K G++E  +
Sbjct: 201 PSVRNCNIVLKVLRDSRMMNKASAVYETM--IEHGIMPTVITFNTMLDSCFKAGDLERVD 258

Query: 238 KTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
           K + EM  R  E++    + Y   +    +  +++EA +F   M+      T   F+  +
Sbjct: 259 KIWLEMKRRNIEFSE---VTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLI 315

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
           +   K      A  + D M+   G +P + TYN+    L    R+ +      E++ +  
Sbjct: 316 EGYCKQGLFDDAWGVTDEMLN-AGIYPTTSTYNIYICALCDFGRIDDAR----ELLSSMA 370

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
            P  ++  T +   +   +   A  +++ +    I P   + N L+ GL   G L   +R
Sbjct: 371 APDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQR 430

Query: 417 FAEEMLNRRILIYEVTMHKLKKAFY-NESRSM-RDIFDSLERR 457
             EEM  + I    +T   L K F  N + SM  +++D + R+
Sbjct: 431 LKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRK 473



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 35/179 (19%), Positives = 80/179 (44%), Gaps = 5/179 (2%)

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKT 239
           D+   N  +  +C+  N   +A+EF  ++ ++ + PD  ++  ++ G+ + G  + A   
Sbjct: 514 DLTIYNVRIDGLCKVGNLV-KAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNL 572

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           + EM+ +  +    V+ Y   +    +  ++++A ++   MK     P +   +  L  +
Sbjct: 573 YDEMLRKRLY--PSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGM 630

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
            K  +   A + +   M   G  P+  +Y M+       ++  EV K + EM+  E +P
Sbjct: 631 CKAGNIDEAYR-YLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEP 688



 Score = 42.0 bits (97), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 8/142 (5%)

Query: 109 QRLSPYAWNLMVDVLG--KNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +RL P      V + G  K GR EQ +     MK+ GV  ++ T  ++    C AG  DE
Sbjct: 579 KRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDE 638

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A      M   G+  +  +   L+S  C  E        +   + K ++PDG +   L +
Sbjct: 639 AYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYTHRALFK 698

Query: 226 GWEKEGNVEEANKTFGEMVERF 247
             EK+    E      E +ER 
Sbjct: 699 HLEKDHESREV-----EFLERL 715


>gi|255660964|gb|ACU25651.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 376

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 160/360 (44%), Gaps = 12/360 (3%)

Query: 80  TPD-LVHEVLQLSYDSPSSAVDFFR-W---AGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           +PD +V+  +   Y   +   D F  W      G R S  ++N+M+  L  NG+ +++ +
Sbjct: 22  SPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNGKVDEVIS 80

Query: 135 AVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
              +MKE G V    T+  +   +C  G  D+++   ++    G   D  A +++++ +C
Sbjct: 81  IWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLC 140

Query: 194 RQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           ++ N   RAL  L   +K    P+   +  L+ G       E+A + F EM      +P 
Sbjct: 141 KEAN-LDRALYVLTGMIKSGCKPNIHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPT 198

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            ++ Y T +  L + +   EA   ++ +  +   P +  +S  +  L   +    A+QLW
Sbjct: 199 -IITYNTLISGLCKKEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLW 257

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
           +  +   G  PD   +N++   L    ++      + +M + +  P  ++  T +     
Sbjct: 258 N-QVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRRKCAPNLVSHNTLMEGFYK 316

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
             +   A+ IW  IL NG+ P   S N  L GL +  R+SD   F  + + ++ ++ ++T
Sbjct: 317 DGDIRNALVIWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKTVLTKIT 376


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/435 (20%), Positives = 171/435 (39%), Gaps = 34/435 (7%)

Query: 1   MEVMDESPDFVIKNKIIPSSSSTTTSPTSHNPHRPTRP-----RFPTHLDAPYISSSARI 55
           M +    P +V+ N +I    ST   P+        R           L+   + +  R 
Sbjct: 37  MVICGYQPGYVVYNILIGGICSTEDLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRC 96

Query: 56  ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPS--SAVDFFRWAGR-GQRLS 112
           +C I     + ++   +   G IP      +V+    ++     A   F+   R G    
Sbjct: 97  LCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPD 156

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFD 171
            Y +  ++D   K G  EQ  N    M++DG   ++ T+ ++  +Y    K   A   F+
Sbjct: 157 VYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFE 216

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK--KIVDPDGDSFAILLEGWEK 229
           +M  +G   ++V   +L+   C+   +T +A +   R+K  K+  PD D +  +++   K
Sbjct: 217 MMLSNGCVPNIVTYTALIDGHCKA-GETEKACQIYARMKNDKVDIPDVDIYFRIVDSELK 275

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           E NV     T+G +V+                  L +  +V EA   L  M  E C P  
Sbjct: 276 EPNV----VTYGALVD-----------------GLCKAHKVKEARDLLETMSLEGCEPNQ 314

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             +   +D   K+     A +++   M+ HG  P+  TY+ + + L K+KR+    K   
Sbjct: 315 IIYDALIDGFCKVGKLDEAQEVF-TKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLT 373

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           +M++N   P  +     +  L    + + A  +   + E G  P   +   ++ G    G
Sbjct: 374 KMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAG 433

Query: 410 RLSDVRRFAEEMLNR 424
           R+       + M ++
Sbjct: 434 RVDRCLELLQLMTSK 448



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 91/208 (43%), Gaps = 3/208 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++ D  C A K  EA    + MS+ G E + +  ++L+   C+          F   
Sbjct: 281 TYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKM 340

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +     P+  +++ L++   K+  ++ A K   +M+E     P +V+ Y   +  L +  
Sbjct: 341 LGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLEN-SCAP-NVVIYTEMVDGLCKVG 398

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           + DEA + + +M+ + C+P +  ++  +D   K       ++L   +M   G  P+ +TY
Sbjct: 399 KTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQ-LMTSKGCAPNFITY 457

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEW 356
            ++         + +  K   EM +  W
Sbjct: 458 RVLINHCCAAGLLDDAHKLLEEMKQTYW 485



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 104/286 (36%), Gaps = 34/286 (11%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F S+  +YC +G Y  A      M + G +   V  N L+  IC  E+  S  +      
Sbjct: 14  FNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEV------ 67

Query: 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGK 268
                                  +  A + + EM+E     N  +V  +   L  +    
Sbjct: 68  -----------------------IGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCI---G 101

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           + ++A   +R M  +   P    +S  +  L   +    A QL+   M  +G  PD  TY
Sbjct: 102 KFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQ-EMKRNGITPDVYTY 160

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
             + +   K   + +   +F EM ++   P  +     I   L   +   A EI+  +L 
Sbjct: 161 TTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLS 220

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
           NG +P   +   L+ G    G      +    M N ++ I +V ++
Sbjct: 221 NGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIY 266


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 161/361 (44%), Gaps = 9/361 (2%)

Query: 77  IIPTPDLVHEVL-QLSYDSPSS-AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMW 133
           ++P     +E+L +LS  S    A+ FF+     G   S + +N+++  L + G  E   
Sbjct: 212 VLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAAR 271

Query: 134 NAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
           +    MK  G+   + T+ S+ D Y   G    AV  F+ M   G E DV+  NSL++  
Sbjct: 272 SLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCF 331

Query: 193 CRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           C+ E +  +A E+L+ +K + + P+  +++ L++ + K G + EANK F +M+ R    P
Sbjct: 332 CKFE-RIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMI-RVGLQP 389

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
                Y + +    +   ++EA K    M+       +  ++  LD L +      A +L
Sbjct: 390 NE-FTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEEL 448

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
           +  ++   G   +   Y  +F   IK K + +      EM K   +P  L   T I  L 
Sbjct: 449 FGALLK-AGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLC 507

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 431
             +E E ++ +   +++ G+         L+     +G+ ++     +EM +  I I  V
Sbjct: 508 RQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVV 567

Query: 432 T 432
           T
Sbjct: 568 T 568



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 138/326 (42%), Gaps = 41/326 (12%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++   K  R  Q +  +  MK+ G+  ++ T++++ D++C AG   EA   F  M 
Sbjct: 324 YNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMI 383

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             G++ +     SL+ A C+     + A +  + +++  V+ +  ++  LL+G  ++G +
Sbjct: 384 RVGLQPNEFTYTSLIDANCKI-GDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRM 442

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL---- 289
            EA + FG ++ +  W     + Y +     I+ K +++A+  L  M  +N  P L    
Sbjct: 443 REAEELFGALL-KAGWTLNQQI-YTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYG 500

Query: 290 -------------------------------KFFSNALDILVKLNDSTHAVQLWDIMMVF 318
                                            ++  +D   K+  +T AV L   M   
Sbjct: 501 TKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDL 560

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            G     +TY ++ + L K   V +  ++F  M +N  QP  +     I  L   D  E 
Sbjct: 561 -GIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEE 619

Query: 379 AIEIWNYILENGILPLEASANELLVG 404
           A  ++N +L+ GI P +     L+ G
Sbjct: 620 AKNLFNEMLDKGISPDKLVYTSLIDG 645



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 5/210 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           G   + Y +  ++D   K G+  +  N ++ M++ G+ +++ T+  + D  C  G   +A
Sbjct: 526 GLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQA 585

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           V  FD M+ +G++ +++   +L+  +C+ +        F   + K + PD   +  L++G
Sbjct: 586 VRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDG 645

Query: 227 WEKEGNVEEANKTFGEMVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
             K GN  EA      MVE   E +   + AY + +    R  QV  A   L  M  +  
Sbjct: 646 NMKHGNPGEALSLRNRMVEIGMELD---LCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGI 702

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            P        L    +L D   A+ L D M
Sbjct: 703 IPDQVLCICLLRKYYELGDINEALALHDDM 732



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 149/396 (37%), Gaps = 70/396 (17%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKN----------- 126
            P  V + L      P SA+ FF+ AG   G R +  ++ ++  +L              
Sbjct: 93  APIWVSKALVKLKGDPKSALKFFKEAGARAGFRHAAESYCVLAHILFCGMFYLDARSVIK 152

Query: 127 -----GR-------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
                GR       F+ +W+   V +         F ++F+     G  +EA   F  M+
Sbjct: 153 EWILLGREFPGCDFFDMLWSTRNVCRP----GFGVFDTLFNVLVDLGMLEEARQCFWKMN 208

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGWEKEGNV 233
              V   V + N LL  +  + ++   AL F  + V   + P   ++ +++    +EG++
Sbjct: 209 KFRVLPKVRSCNELLHRL-SKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDL 267

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E A   F E                                     MK +   P +  ++
Sbjct: 268 EAARSLFEE-------------------------------------MKAKGLRPDIVTYN 290

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
           + +D   K+   T AV +++ M    G  PD +TYN +  C  K +R+ +  ++ H M +
Sbjct: 291 SLIDGYGKVGMLTGAVSVFEEMKD-AGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQ 349

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
              QP  +  +T I     A     A + +  ++  G+ P E +   L+     +G L++
Sbjct: 350 RGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNE 409

Query: 414 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD 449
             +   EM    + +  VT   L      + R MR+
Sbjct: 410 AFKLESEMQQAGVNLNIVTYTALLDGLCEDGR-MRE 444


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 138/307 (44%), Gaps = 7/307 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           FF    +G R +   +N ++  L   G+       +  M+  GV  ++ ++ ++   +C 
Sbjct: 537 FFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCL 596

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           AG+ DEA    DVM   G++ D+++ ++LL   C+     +    F   ++K V P   +
Sbjct: 597 AGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVT 656

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERF-EWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ +L+G        EA + +  M++   +W+   +  Y   L  L +   VDEA K  +
Sbjct: 657 YSTILQGLFHTRRFSEAKELYLNMIKSGQQWD---IYTYNIILNGLCKTNCVDEAFKIFQ 713

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            +  ++  P +  F+  +D+L K      A+ L+   +  HG  P+ +TY ++ + +I+ 
Sbjct: 714 SLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLF-ASIPSHGLVPNVVTYCIMMKNIIQE 772

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
             + E +  F  M K+   P  +     I  LL   E   A    + I E     LEAS 
Sbjct: 773 GLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMN-FSLEAST 831

Query: 399 NELLVGL 405
             LL+ L
Sbjct: 832 TSLLISL 838



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 146/340 (42%), Gaps = 13/340 (3%)

Query: 61  AHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVD-----FFRWAGRGQRLSPYA 115
           A A   D+   +   GI P  + +  ++  +Y +  + +D     F R +  G       
Sbjct: 424 AIADLTDLLDLMVANGISPN-NYIFNIVLCAY-AKKAMIDEAMHIFSRMSQHGLSPDVVT 481

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + +++D L K GR +        M  DGV  +   F S+    C   ++++A   F  M 
Sbjct: 482 YGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMW 541

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
             GV  +VV  N+++  +C  E Q   A   ++ ++++ V P+  S+  L+ G    G  
Sbjct: 542 DQGVRPNVVFFNTIMCNLC-NEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRT 600

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA +    MV      P+ +++Y+T L    +  ++D A    R M  +   P    +S
Sbjct: 601 DEAAQLLDVMVS-VGLKPD-LISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYS 658

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             L  L      + A +L+ + M+  G   D  TYN+I   L K   V E  K F  +  
Sbjct: 659 TILQGLFHTRRFSEAKELY-LNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCS 717

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            + +P  +     I +L      + A++++  I  +G++P
Sbjct: 718 KDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVP 757



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 128/313 (40%), Gaps = 13/313 (4%)

Query: 121 DVLGKNGRFEQMWNAVRVMKEDGVLS----------LPTFASIFDSYCGAGKYDEAVMSF 170
           DV+  N   + +  A  V + DGVL           + T+  +   Y   G++ E V   
Sbjct: 303 DVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRL 362

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           + M   G++ DVV  + LL  +C+    T     F   ++K + P+   + ILL G+   
Sbjct: 363 EEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAAR 422

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G + +       MV     +P + + +   L    +   +DEA+     M      P + 
Sbjct: 423 GAIADLTDLLDLMVAN-GISPNNYI-FNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVV 480

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +   +D L KL     AV  ++  M+  G  P+S+ +N +   L    R  + E+ F E
Sbjct: 481 TYGILIDALCKLGRVDDAVLKFN-QMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFE 539

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M     +P  +   T +  L +  +  +A  + + +   G+ P   S N L+ G    GR
Sbjct: 540 MWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGR 599

Query: 411 LSDVRRFAEEMLN 423
             +  +  + M++
Sbjct: 600 TDEAAQLLDVMVS 612



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 132/317 (41%), Gaps = 9/317 (2%)

Query: 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206
           L T++ +   +C  G+ +    +F ++   G   + V +N LL+ +C  +         L
Sbjct: 90  LCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILL 149

Query: 207 NRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN-PEHVLAYETFLITL 264
            R+ +    P+  S   LL+G   E  VEEA +    M E    N   +V+ Y T +  L
Sbjct: 150 RRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGL 209

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            + + VD A   L+ M  +     +  +S  +D L K      A  +    M+  G  PD
Sbjct: 210 CKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQ-HMIDKGVKPD 268

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +TYN I + L K + V   E     MI    +P  +   T I  L  A   + A  +  
Sbjct: 269 VVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQ 328

Query: 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKAF 440
           ++++  + P   + N L+ G  + G   +V R  EEM  R     ++ Y + +  L K  
Sbjct: 329 HMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKN- 387

Query: 441 YNESRSMRDIFDSLERR 457
             +    R IF  + R+
Sbjct: 388 -GKCTEARKIFYCMIRK 403



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 151/379 (39%), Gaps = 41/379 (10%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D L K    ++    ++ M + GV L + T+++I D  C A   D A      M 
Sbjct: 202 YNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMI 261

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             GV+ DVV  N+++  +C+ +    RA   L   + K V PD  ++  +++G  K   V
Sbjct: 262 DKGVKPDVVTYNTIIDGLCKAQ-AVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAV 320

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A+     M+++ +  P+ +  Y   +   +   +  E ++ L  M      P +  +S
Sbjct: 321 DRADGVLQHMIDK-DVKPD-IQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYS 378

Query: 294 NALDILVKLNDSTHAVQLWDIM----------------------------------MVFH 319
             LD L K    T A +++  M                                  MV +
Sbjct: 379 LLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVAN 438

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
           G  P++  +N++     K   + E    F  M ++   P  +     I  L      + A
Sbjct: 439 GISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDA 498

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
           +  +N ++ +G+ P     N L+ GL  + R         EM ++ +    V  + +   
Sbjct: 499 VLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCN 558

Query: 440 FYNESRSM--RDIFDSLER 456
             NE + M  + + DS+ER
Sbjct: 559 LCNEGQVMVAQRLIDSMER 577


>gi|413939122|gb|AFW73673.1| hypothetical protein ZEAMMB73_530264 [Zea mays]
          Length = 526

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 120/293 (40%), Gaps = 23/293 (7%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM- 173
           A++ +VD LG+  +F+  W  V     DG  S  TFA +   Y  AG   +A+ +FD M 
Sbjct: 120 AYDAVVDALGRARQFDAAWRVVVDASADGAASPRTFAVLARRYVAAGMTRQAIRAFDDME 179

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
           +    E D     +LL  +C+ +     A E  N+ K    P+   ++IL+ GW K    
Sbjct: 180 AFVSREPDAAEFATLLDTLCKYKYPKV-ATEVFNKRKYKYGPNEKMYSILIYGWCKVNRS 238

Query: 234 EEANKTFGEM-VERFEWNPEHVLAYETFLITLIR----------GKQVDEALKFLRVMKG 282
           + A K   +M V   E N   ++ Y   L  + R           + V  A   L+ M+G
Sbjct: 239 DMAKKFLKDMLVHGIEPN---IVTYNILLNGICRHASLHPDYRFDRTVHAAEDLLKEMRG 295

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM---MVFHGAFPDSLTYNMIFECLIKNK 339
               P +  +S    I++ +    H  +L   M   M   G  P   TY  + +CL    
Sbjct: 296 RGIEPDVTSYS----IILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLSSCG 351

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
           R+ + E    EM+     P+P      +       +   A+E++N +   G L
Sbjct: 352 RLEDGEILLDEMVAEGVCPSPATYNCFLKEYRGRKDVTAALELYNKMKAPGSL 404



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 23/272 (8%)

Query: 200 SRALEFLNRVKKIVDPDGD------SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
            RA +F    + +VD   D      +FA+L   +   G   +A + F +M E F      
Sbjct: 129 GRARQFDAAWRVVVDASADGAASPRTFAVLARRYVAAGMTRQAIRAFDDM-EAFVSREPD 187

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
              + T L TL + K    A +     K +   P  K +S  +    K+N S  A +   
Sbjct: 188 AAEFATLLDTLCKYKYPKVATEVFNKRKYKYG-PNEKMYSILIYGWCKVNRSDMAKKFLK 246

Query: 314 IMMVFHGAFPDSLTYNMIFECLIK----------NKRVHEVEKFFHEMIKNEWQPTPLNC 363
            M+V HG  P+ +TYN++   + +          ++ VH  E    EM     +P   + 
Sbjct: 247 DMLV-HGIEPNIVTYNILLNGICRHASLHPDYRFDRTVHAAEDLLKEMRGRGIEPDVTSY 305

Query: 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
           +  + +   A +PE+ + ++  + E GI P  A+   ++  L + GRL D     +EM+ 
Sbjct: 306 SIILHVYSRAHKPELCLCMFRSMKERGICPTVATYTSVIKCLSSCGRLEDGEILLDEMVA 365

Query: 424 RRILIYEVTMHKLKKAFYNESRSMRDIFDSLE 455
             +     T +     F  E R  +D+  +LE
Sbjct: 366 EGVCPSPATYN----CFLKEYRGRKDVTAALE 393



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 20/289 (6%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--------NQTSR 201
           ++ +   +C   + D A      M +HG+E ++V  N LL+ ICR          ++T  
Sbjct: 225 YSILIYGWCKVNRSDMAKKFLKDMLVHGIEPNIVTYNILLNGICRHASLHPDYRFDRTVH 284

Query: 202 ALE-FLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYET 259
           A E  L  ++ + ++PD  S++I+L  + +    E     F  M ER       V  Y +
Sbjct: 285 AAEDLLKEMRGRGIEPDVTSYSIILHVYSRAHKPELCLCMFRSMKERGIC--PTVATYTS 342

Query: 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH 319
            +  L    ++++    L  M  E   P+   ++  L       D T A++L++ M    
Sbjct: 343 VIKCLSSCGRLEDGEILLDEMVAEGVCPSPATYNCFLKEYRGRKDVTAALELYNKMKA-P 401

Query: 320 GAF--PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
           G+   PD  TYN++     K  R   V   + +M ++   P   +    I    D+ +  
Sbjct: 402 GSLTAPDIHTYNILLGMFSKLNRHGTVMDIWSDMCESTVGPDLDSYTLLIHCFCDSQKWR 461

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            A + +  ++E G LP + +   L  GL     L   RR     L RR+
Sbjct: 462 EACQFFMEMIEKGFLPQKITFETLYRGLIQADMLRTWRR-----LKRRV 505


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/357 (19%), Positives = 154/357 (43%), Gaps = 19/357 (5%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +++SP    +N +++   K G+F +       M   G++ S  T++S+ D +C   + D 
Sbjct: 285 KKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDA 344

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILL 224
           A   F +M+  G   D++  N+L++  CR + +    ++ L+ + +  +  +  ++  L+
Sbjct: 345 AEHMFYLMATKGCSPDIITFNTLIAGYCRAK-RVDDGIKLLHEMTEAGLVANTITYTTLI 403

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE- 283
            G+ + G++  A     EMV        +V+   T L  L    ++ +AL+  + M+   
Sbjct: 404 HGFCQVGDLNAAQDLLQEMVS--SGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSK 461

Query: 284 ----------NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
                        P ++ ++  +  L+       A +L++  M   G  PD++TYN +  
Sbjct: 462 MDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE-EMPHRGIVPDTITYNSVIH 520

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            L K  R+ E  + F  M    + P  +   T I     A   +  +E++  +   GI+ 
Sbjct: 521 GLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVA 580

Query: 394 LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 450
              +   L+ G R +G ++      +EM+   +    +T+  +    +++    R +
Sbjct: 581 NAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAV 637



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 144/351 (41%), Gaps = 14/351 (3%)

Query: 98  AVDFFRWAGRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFD 155
           A+D F    R + L S   +  ++ V+ + GR + + +  R M+   V  +  +F  +  
Sbjct: 62  AIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTILMK 121

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP 215
            +C   K   A+ +F  ++  G    VV  ++LL  +C  E++ S AL+  +++ K   P
Sbjct: 122 CFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLC-VEDRISEALDLFHQMCK---P 177

Query: 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
           +  +F  L+ G  +EG V EA      M+E     P  +  Y T +  + +      AL 
Sbjct: 178 NVVTFTTLMNGLCREGRVVEAVALLDRMLED-GLQPNQI-TYGTIVDGMCKMGDTVSALN 235

Query: 276 FLRVM------KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
            LR M      K       L+  +  ++        + A QL   M+      PD +TYN
Sbjct: 236 LLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYN 295

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
            +    +K  +  E E+ + EM+     P+ +  ++ I      +  + A  ++  +   
Sbjct: 296 ALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATK 355

Query: 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           G  P   + N L+ G     R+ D  +   EM    ++   +T   L   F
Sbjct: 356 GCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGF 406


>gi|255660950|gb|ACU25644.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
          Length = 481

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 131/288 (45%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL         A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLH-GAKKTEHALQFFRWVERSNLFQHDRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY   G   E+V  F  M   GVE+ + + ++L   
Sbjct: 65  RCILLDMPKKGLEWDEDLWVLMIDSYGKKGIVQESVKLFQKMEELGVERTIKSYDALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G VE AN  F +M  R +  P
Sbjct: 125 ILRRGRFMMAKRYFNKMLNEGIEPTRHTFNVMIWGFFLSGKVETANXFFEDMKSR-DITP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA ++   MKG N  PT+  ++  +   V ++    A+ L
Sbjct: 184 D-VITYNTLINGYYRVKKMEEAERYFVEMKGRNIEPTVITYTTLIKGYVSVDRVDDALSL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M  F G  P+++TY+ +   L   +++ E +    EM+     PT
Sbjct: 243 MEEMKGF-GIKPNAITYSTLLPGLCNAEKMSEAQSILKEMVDKYIAPT 289



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 11/226 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K+G V+E+ K F +M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDEDLWVLMIDSYGKKGIVQESVKLFQKMEELGVER------TIKSYDAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F N +     L+        +   M    
Sbjct: 122 FKVILRRGRFMMAKRYFNKMLNEGIEPTRHTF-NVMIWGFFLSGKVETANXFFEDMKSRD 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E E++F EM     +PT +   T I   +  D  + A+
Sbjct: 181 ITPDVITYNTLINGYYRVKKMEEAERYFVEMKGRNIEPTVITYTTLIKGYVSVDRVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            +   +   GI P   + + LL GL N  ++S+ +   +EM+++ I
Sbjct: 241 SLMEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAQSILKEMVDKYI 286



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 54/257 (21%), Positives = 99/257 (38%), Gaps = 35/257 (13%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++   Y    + D+A+   + M   G++ + +  ++LL  +C  E  +         
Sbjct: 222 TYTTLIKGYVSVDRVDDALSLMEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAQSILKEM 281

Query: 209 VKKIVDPDGDS-FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           V K + P  +S F  L+ G  K GN++ A      M+ R    P     Y   +    + 
Sbjct: 282 VDKYIAPTDNSIFLKLISGQCKAGNLDAAADVLKAMI-RLSV-PTEAGHYGVLIENYCKA 339

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           ++ D+A+  L  +  +             DI+++   + H                +   
Sbjct: 340 EKYDKAVNLLDKLIEK-------------DIILRPQSTLHM---------------EPSA 371

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYI 386
           YN + E L  N +  + E    +++K   Q PT LN  T I        P+ A E+   +
Sbjct: 372 YNPMIEYLCDNGQTAKAETLVRQLMKLGVQEPTALN--TLIRGHSQEGSPDSAFELLKIM 429

Query: 387 LENGILPLEASANELLV 403
           L   +   E SA + LV
Sbjct: 430 LRRKV-DSEKSAYDSLV 445


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 154/363 (42%), Gaps = 30/363 (8%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGA 160
           R    G + +   +  +VD + K G      N +R M+E    + ++  +++I DS C  
Sbjct: 209 RMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKD 268

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF 220
           G++ +A   F  M   G+  D+   NS++   C     +         +++ + PD  ++
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L+  + KEG   EA + + EM+ R      + + Y + +    +  ++D A     +M
Sbjct: 329 NALINAFVKEGKFFEAAELYDEMLPR--GIIPNTITYNSMIDGFCKQDRLDAAEDMFYLM 386

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH-----GAFPDSLTYNMIFE-- 333
             + C P +  F+  +D          A ++ D M + H     G   +++TYN +    
Sbjct: 387 ATKGCSPDVFTFTTLID------GYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGF 440

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE----- 388
           CL+ +  ++       +MI +   P  + C T +  L D  + + A+E++  + +     
Sbjct: 441 CLVGD--LNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDL 498

Query: 389 ------NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442
                 NG+ P   + N L+ GL N G+  +     EEM +R I+   +T   +      
Sbjct: 499 DASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558

Query: 443 ESR 445
           +SR
Sbjct: 559 QSR 561



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 160/370 (43%), Gaps = 19/370 (5%)

Query: 51  SSARIIC-----EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA 105
           S+AR+ C     + LA AS +  E+      +       HE+  L       A+D F   
Sbjct: 17  SAARLFCTRSIRDTLAKASGESCEAGFGGESLKLQSGF-HEIKGLE-----DAIDLFSDM 70

Query: 106 GRGQRL-SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
            R + L S   +  ++ V+ +  R + + +  + M+   +   + +F  +   +C   K 
Sbjct: 71  LRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKL 130

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
             A+ +F  ++  G+  DVV   +LL  +C  E++ S AL+F +++ +    P+  +F  
Sbjct: 131 PFALSTFGKITKLGLHPDVVTFTTLLHGLC-VEDRVSEALDFFHQMFETTCRPNVVTFTT 189

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L+ G  +EG + EA      M+E     P  +  Y T +  + +      AL  LR M+ 
Sbjct: 190 LMNGLCREGRIVEAVALLDRMMED-GLQPTQI-TYGTIVDGMCKKGDTVSALNLLRKMEE 247

Query: 283 -ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
             +  P +  +S  +D L K    + A  L+  M    G FPD  TYN +      + R 
Sbjct: 248 VSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQE-KGIFPDLFTYNSMIVGFCSSGRW 306

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            + E+   EM++ +  P  +     I   +   +   A E+++ +L  GI+P   + N +
Sbjct: 307 SDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSM 366

Query: 402 LVGLRNLGRL 411
           + G     RL
Sbjct: 367 IDGFCKQDRL 376



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/355 (21%), Positives = 141/355 (39%), Gaps = 48/355 (13%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG   +   +N M+D   K  R +   +   +M   G    + TF ++ D YCGA + D+
Sbjct: 354 RGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDD 413

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
            +     M   G+  + V  N+L+   C   +  + AL+   + +   V PD  +   LL
Sbjct: 414 GMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNA-ALDLSQQMISSGVCPDIVTCNTLL 472

Query: 225 EGWEKEGNVEEANKTFGEMVE-RFEWNPEH--------VLAYETFLITLIRGKQVDEALK 275
           +G    G +++A + F  M + + + +  H        VL Y   +  LI     +E  K
Sbjct: 473 DGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLI-----NEG-K 526

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
           FL                              A +L++  M   G  PD++TY+ + + L
Sbjct: 527 FL-----------------------------EAEELYE-EMPHRGIVPDTITYSSMIDGL 556

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
            K  R+ E  + F  M    + P  +   T I     A   +  +E++  +   GI+   
Sbjct: 557 CKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADA 616

Query: 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDI 450
                L+ G R +G ++      +EM++  +    +T+  +   F+++    R +
Sbjct: 617 IIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAV 671


>gi|255660954|gb|ACU25646.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 375

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 161/359 (44%), Gaps = 12/359 (3%)

Query: 80  TPD-LVHEVLQLSYDSPSSAVDFFR-W---AGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           +PD +V+  +   Y   +   D F  W      G R S  ++N+M+  L  NG+ +++ +
Sbjct: 22  SPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNGKVDEVIS 80

Query: 135 AVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
              +MKE G V    T+  +   +C  G  D+++   ++    G   D  A +++++ +C
Sbjct: 81  IWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLC 140

Query: 194 RQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           ++ N   RAL  LN  +K    P+   +  L+ G       E+A + F EM      +P 
Sbjct: 141 KEAN-LDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPT 198

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            ++ Y T +  L + +   EA   ++ +  +   P +  +S  +  L   +    A+QLW
Sbjct: 199 -IITYNTLINGLCKKEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLW 257

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
           +  +   G  PD   +N++   L    ++      + +M + ++ P  ++  T +     
Sbjct: 258 N-QVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKYAPNLVSHNTLMEGFYK 316

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 431
             +   A+ IW  IL NG+ P   S N  L GL +  R+SD   F  + + ++ ++ ++
Sbjct: 317 DGDIRNALVIWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKTVLTKI 375


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 145/327 (44%), Gaps = 12/327 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYC 158
           F++   R  + +  A+N M+ +L   G++E++      M  +G       T++++  ++C
Sbjct: 182 FYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFC 241

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDG 217
             G+ D A+   + M  +G+ Q    + +++ ++  + +    AL     ++ +   PD 
Sbjct: 242 KLGRQDSAIRLLNEMKENGM-QPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDV 300

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++  L+ G  K G ++EA   + EM +R +  P+ V+     +  L +  ++D+ LK  
Sbjct: 301 FTYTELIRGLGKAGRIDEAYHFYHEM-QREDCKPDTVVM-NNMINFLGKAGRLDDGLKLF 358

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M   +C P +  ++  +  L +       V  W   M   G  P   TY+++ +   K
Sbjct: 359 EEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCK 418

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             R+ +      EM +  + P P    + I  L  A   ++A E++  + EN      +S
Sbjct: 419 TNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENC---GSSS 475

Query: 398 ANELLVGLRNL---GRLSDVRRFAEEM 421
           A    V +++L   GRL D     +EM
Sbjct: 476 ARVYAVMIKHLGKAGRLDDAINLFDEM 502



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 112/285 (39%), Gaps = 43/285 (15%)

Query: 72  LACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW----AGRGQRLSPYAWNLMVDVLGKNG 127
           +  +  IP     + +++  ++S S   + F W     G G   SP+ +++++D   K  
Sbjct: 361 MGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTN 420

Query: 128 RFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           R E+    +  M E G    P  + S+ D+   A +YD A   F  +             
Sbjct: 421 RIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQEL------------- 467

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
                   +EN  S +                 +A++++   K G +++A   F EM  +
Sbjct: 468 --------KENCGSSSARV--------------YAVMIKHLGKAGRLDDAINLFDEM-SK 504

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P +V AY   +  L R   +DEAL  +R M+   C P +  ++  L+ L K     
Sbjct: 505 LGCTP-NVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPH 563

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
            A+++    M      PD+++YN +   L       E  +   EM
Sbjct: 564 RAMEML-TNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEM 607



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 155/381 (40%), Gaps = 45/381 (11%)

Query: 43  HLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY--DSPSSAVD 100
           H D    S+     C++    S+  + + +   G+ PT  +   ++ L +  D+   A+ 
Sbjct: 227 HPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALS 286

Query: 101 FFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSY 157
            F    R     P  + +  ++  LGK GR ++ ++    M +ED         ++ +  
Sbjct: 287 LFEEM-RYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFL 345

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPD 216
             AG+ D+ +  F+ M +     +VV  N+++ A+   +++ S    +  R+K   + P 
Sbjct: 346 GKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPS 405

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +++IL++G+ K   +E+A     EM E+    P    AY + +  L + K+ D A + 
Sbjct: 406 PFTYSILIDGFCKTNRIEKAMMLLEEMDEK--GFPPCPAAYCSLIDALGKAKRYDLACEL 463

Query: 277 LRVMKGENCFPT-LKFFSNALDILVKLNDSTHAVQLWDIM-------------------- 315
            + +K ENC  +  + ++  +  L K      A+ L+D M                    
Sbjct: 464 FQELK-ENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLA 522

Query: 316 --------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                         M  HG  PD  +YN+I   L K    H   +    M  +  +P  +
Sbjct: 523 RACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAV 582

Query: 362 NCATAITMLLDADEPEIAIEI 382
           +  T ++ L  A   E A E+
Sbjct: 583 SYNTVLSALSHAGMFEEAAEL 603



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 77/202 (38%), Gaps = 2/202 (0%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           AY + +I LI   Q ++  +    M  E +C P    +S  +    KL     A++L + 
Sbjct: 196 AYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNE 255

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
           M   +G  P +  Y MI     K   VH     F EM     +P        I  L  A 
Sbjct: 256 MKE-NGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAG 314

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
             + A   ++ +      P     N ++  L   GRL D  +  EEM     +   VT +
Sbjct: 315 RIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYN 374

Query: 435 KLKKAFYNESRSMRDIFDSLER 456
            + KA +     + ++F   ER
Sbjct: 375 TIIKALFESKSRVSEVFSWFER 396



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 66/158 (41%)

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L   K + +A+     +K   C PT + +++ + +L+         +L++ M       P
Sbjct: 169 LGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHP 228

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D++TY+ +     K  R     +  +EM +N  QPT       I++    D    A+ ++
Sbjct: 229 DTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLF 288

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
             +      P   +  EL+ GL   GR+ +   F  EM
Sbjct: 289 EEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEM 326


>gi|296088471|emb|CBI37462.3| unnamed protein product [Vitis vinifera]
          Length = 673

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 178/417 (42%), Gaps = 26/417 (6%)

Query: 67  DIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVLG 124
           D+E AL   G+  T DLV E+L   +     A  FF WAG     S  P A+N M+D+L 
Sbjct: 252 DMEKALDLVGVELTTDLVIEILGKIHFEEKMAFRFFMWAGHQDCYSHEPRAYNEMIDILS 311

Query: 125 ----KNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
               K  +F  + + +  MK +   S+P      I   Y    K+   +  F       V
Sbjct: 312 STKYKVKQFRIVCDMLDYMKRNDKKSVPVEVLLMILRKY--TEKHLAHLHKFAKKKKIRV 369

Query: 179 --EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236
             + ++ A+N LL A+C+  ++  R LE +  +     PD  ++   ++ + K G V EA
Sbjct: 370 KTQPEINALNLLLDALCKNPSRGMRVLEEMIEMGHT--PDSFTYNTAIDSFCKAGMVTEA 427

Query: 237 NKTFGEMVERFE-WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
            + F  M  +    +      Y   ++ L++  + +E  K ++ M      P +  +   
Sbjct: 428 TELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMINSGVLPDVSTYKQV 487

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           ++ +        A +  +  M   G  PD +TYN   + L +NK+  E    +  MI+  
Sbjct: 488 IEGMCLAGKVEEAYKFLE-EMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAG 546

Query: 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415
             P+       I+M  +  EP+ A E W+ + + G      +   ++ GL N  ++ D  
Sbjct: 547 CVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDTDTYCVMIEGLFNCNKMEDAC 606

Query: 416 RFAEEMLNRRI---------LIYEVTMHKLKKAFYNESRSMRDIFD-SLERRCKTSQ 462
              +E++N+ I          + +++M    +A +  S  MR  ++ ++ RR   +Q
Sbjct: 607 FLLDEVVNKGIKLPYRKFDCFLMQLSMIGDLQAIHKLSEHMRKFYNPAMARRFALNQ 663


>gi|145517919|ref|XP_001444837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412270|emb|CAK77440.1| unnamed protein product [Paramecium tetraurelia]
          Length = 981

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 102/188 (54%), Gaps = 4/188 (2%)

Query: 181 DVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKT 239
           D +  NSL+ A C + N+  + +E    +K K ++P   ++ IL++ + K+ ++  A K 
Sbjct: 538 DEILYNSLIDA-CVKFNEIQKGMELFREMKNKQIEPSSVTYGILIKAYGKQNDLNGAFKI 596

Query: 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           F EM ++    P + + Y   +   +R  ++D+AL+F+  MK +N       ++  +   
Sbjct: 597 FEEMKQK--KIPINDVTYGCLVDACVRNDRLDQALQFIDQMKSQNLPINTVLYTTIIKGF 654

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            KLN +  A++ +D+M      +P+ +TYN + + ++KN  +++ +K F E++ ++ +P 
Sbjct: 655 CKLNQTEEAIKYFDLMKQSPKTYPNLITYNSLLDGMVKNGLLNQADKLFQELVDSKIKPD 714

Query: 360 PLNCATAI 367
            +  +T +
Sbjct: 715 LITFSTLL 722



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/325 (20%), Positives = 154/325 (47%), Gaps = 22/325 (6%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP--TFASIFDSYCGAGK-YDEAVMSFDV 172
           +N ++D     G   + +  +  MK+   + L   T+ ++    CG  K  ++A+  F+ 
Sbjct: 395 YNCLLDACINAGDLNRGFQLLNEMKQSQTIQLDEITYNTLIKG-CGRKKRLNDALNLFEE 453

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWE-K 229
           M + G++ + ++ NSLL + C + N+ + A  +   ++K   + PD  +++IL+ G +  
Sbjct: 454 MKLIGIKPNRISFNSLLDS-CVKCNKMNIAWRYFEEMRKQYGIFPDNFTYSILVNGIKTN 512

Query: 230 EGNVEE---ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
             N +E   A     ++ E  ++ P+ +L Y + +   ++  ++ + ++  R MK +   
Sbjct: 513 HSNRDELLRAITLLEQIQETGQFKPDEIL-YNSLIDACVKFNEIQKGMELFREMKNKQIE 571

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP-DSLTYNMIFECLIKNKRVHEVE 345
           P+   +   +    K ND   A ++++ M       P + +TY  + +  ++N R+ +  
Sbjct: 572 PSSVTYGILIKAYGKQNDLNGAFKIFEEMK--QKKIPINDVTYGCLVDACVRNDRLDQAL 629

Query: 346 KFFHEMIKNEWQPTPLNC---ATAITMLLDADEPEIAIEIWNYILEN-GILPLEASANEL 401
           +F  +M   + Q  P+N     T I      ++ E AI+ ++ + ++    P   + N L
Sbjct: 630 QFIDQM---KSQNLPINTVLYTTIIKGFCKLNQTEEAIKYFDLMKQSPKTYPNLITYNSL 686

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRI 426
           L G+   G L+   +  +E+++ +I
Sbjct: 687 LDGMVKNGLLNQADKLFQELVDSKI 711



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/327 (20%), Positives = 134/327 (40%), Gaps = 13/327 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASI---FDSYCGAGKYDEAVMSFDV 172
           +N ++D   +  + E M   + V   D     PT  +I    D Y    + ++A  +F+ 
Sbjct: 288 FNKLIDYAFRKSQVE-MAEYLLVFMRDQAKIQPTIVTINTMIDQYFKNNQREKAWKTFEN 346

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSR-ALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
           + +   + D     +L++ +   +N   + A       K+   PD   +  LL+     G
Sbjct: 347 LKLTQTKPDNFTYTTLINGLKNSDNMDLKLAFSLFEEYKQYNQPDQIIYNCLLDACINAG 406

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           ++    +   EM +      + +  Y T +    R K++++AL     MK     P    
Sbjct: 407 DLNRGFQLLNEMKQSQTIQLDEI-TYNTLIKGCGRKKRLNDALNLFEEMKLIGIKPNRIS 465

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF---- 347
           F++ LD  VK N    A + ++ M   +G FPD+ TY+++    IK    +  E      
Sbjct: 466 FNSLLDSCVKCNKMNIAWRYFEEMRKQYGIFPDNFTYSILVNG-IKTNHSNRDELLRAIT 524

Query: 348 FHEMIK--NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             E I+   +++P  +   + I   +  +E +  +E++  +    I P   +   L+   
Sbjct: 525 LLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMELFREMKNKQIEPSSVTYGILIKAY 584

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVT 432
                L+   +  EEM  ++I I +VT
Sbjct: 585 GKQNDLNGAFKIFEEMKQKKIPINDVT 611



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 6/134 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  +VD   +N R +Q    +  MK   + ++   + +I   +C   + +EA+  FD+M
Sbjct: 611 TYGCLVDACVRNDRLDQALQFIDQMKSQNLPINTVLYTTIIKGFCKLNQTEEAIKYFDLM 670

Query: 174 SMH-GVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
                   +++  NSLL  + +    NQ  +  + L  V   + PD  +F+ LL+G  ++
Sbjct: 671 KQSPKTYPNLITYNSLLDGMVKNGLLNQADKLFQEL--VDSKIKPDLITFSTLLKGHCRK 728

Query: 231 GNVEEANKTFGEMV 244
           GN++  N+T   M 
Sbjct: 729 GNMKRLNETVQIMT 742


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 141/342 (41%), Gaps = 43/342 (12%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R + Y + + +  LG+  R +  W   + M ++G    + T+  + D+ C AGK D+A
Sbjct: 265 GLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKA 324

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD---PDGDSFAIL 223
              +  M       D V   +L+    +  +  +    F N ++  VD   PD  ++ IL
Sbjct: 325 KELYVKMRASSHSPDRVTYITLMDKFGKVGDLET-VKRFWNEME--VDGYAPDVVTYTIL 381

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           +E   K G+V+ A      M  +  +   H   Y T +  L++ +++DEAL+ L  M+  
Sbjct: 382 IEALCKSGDVDRAFDMLDVMTTKGIFPNLH--TYNTMICGLLKARRLDEALELLENMESL 439

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM--------------------------- 316
              PT   +   +D   K  D   A+  ++ M                            
Sbjct: 440 GVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEA 499

Query: 317 --VFH-----GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
             +F+     G  PDS+TYNM+ +C  K  ++ +  +   EMI    +P  +   + I  
Sbjct: 500 EDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINT 559

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           L  A   + A +++  +    + P   + N LL GL   G++
Sbjct: 560 LYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKI 601



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 159/389 (40%), Gaps = 77/389 (19%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           +L+P    +N+++  LGK G+  +       M E G   +  TF S+ D        D A
Sbjct: 580 KLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLA 639

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           +  F  M+M     DV+  N+++  + R E +   A  F +++KK + PD  +   L+ G
Sbjct: 640 LKMFCRMTMMNCNPDVLTYNTIIYGLIR-EGRIDYAFWFFHQMKKFLSPDYVTLCTLIPG 698

Query: 227 WEKEGNVEEANKT----------------FGEMVERF--EWNPEHVLAYETFLIT----- 263
             + G VE+A K                 +GE++E    E   E  +++   L+      
Sbjct: 699 VVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQ 758

Query: 264 -------LI-----RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
                  LI     R K +D    F +  K     PTL+ ++  +D L+  N +  A++L
Sbjct: 759 DDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALEL 818

Query: 312 WDIM----------------------------------MVFHGAFPDSLTYNMIFECLIK 337
           ++ M                                  M   G  P+++T+N+I   L+K
Sbjct: 819 FEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVK 878

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
           +  +++    ++E++  ++ PTP      I  LL A   E A++I+  +L+ G  P    
Sbjct: 879 SNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVI 938

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            N L+ G    G +     FA E+  + +
Sbjct: 939 YNILINGFGKSGEID----FACELFKKMV 963



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 148/354 (41%), Gaps = 10/354 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + + +++ L +D  GK+G   +  +    MK+ G++ S+    +   +    G+  EA
Sbjct: 440 GVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEA 499

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLE 225
              F+ +   G+  D V  N L+    +   Q  +A + L+  + K  +PD      L+ 
Sbjct: 500 EDIFNDLHKCGLSPDSVTYNMLMKCYSKA-GQIDKATQLLSEMISKGCEPDVMIINSLIN 558

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              K G V+ A K FG + +  +  P  V+ Y   L  L +  ++ +AL+    M    C
Sbjct: 559 TLYKAGRVDAAWKMFGRL-KNLKLAPT-VVTYNILLTGLGKEGKILKALELFGSMTESGC 616

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    F++ LD L K ND+          M      PD LTYN I   LI+  R+    
Sbjct: 617 PPNTITFNSLLDCLSK-NDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAF 675

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA-NELLVG 404
            FFH+M K    P  +   T I  ++     E AI++    +    L   +    EL+  
Sbjct: 676 WFFHQM-KKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMEC 734

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLER 456
           +     + +   FAE ++   +   +  M  L K      +++  +++FD   +
Sbjct: 735 ILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTK 788



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 133/323 (41%), Gaps = 45/323 (13%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           R    G + S   ++ ++  LG+ G   ++ N +  MK  G+  ++ T+     +   A 
Sbjct: 225 RMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRAR 284

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-DPDGDSF 220
           + D+A   F  M   G   DV+    L+ A+C    +  +A E   +++     PD  ++
Sbjct: 285 RIDDAWGIFKEMDDEGCGPDVITYTVLIDALC-AAGKLDKAKELYVKMRASSHSPDRVTY 343

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
             L++ + K G++E         V+RF WN   V  Y                       
Sbjct: 344 ITLMDKFGKVGDLET--------VKRF-WNEMEVDGYA---------------------- 372

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
                 P +  ++  ++ L K  D   A  + D+M    G FP+  TYN +   L+K +R
Sbjct: 373 ------PDVVTYTILIEALCKSGDVDRAFDMLDVMTT-KGIFPNLHTYNTMICGLLKARR 425

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           + E  +    M     +PT  +    I     + +P  AI+ +  + + GI+P  A+ N 
Sbjct: 426 LDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNA 485

Query: 401 LLVGLRNLGRLSDVRRFAEEMLN 423
            L  L   GR+S+    AE++ N
Sbjct: 486 SLYTLAETGRISE----AEDIFN 504



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 134/294 (45%), Gaps = 10/294 (3%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFD 171
            ++N ++D L  +   E+       MK  G  + P   T+  + D++  + + ++    + 
Sbjct: 798  SYNCLMDGLLGSNFTEKALELFEDMKSAG--THPNNFTYNLLLDAHGKSKRINKLYDLYS 855

Query: 172  VMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKE 230
             M   G E + +  N ++SA+ +  N  ++AL+ +   +     P   ++  L++G  K 
Sbjct: 856  EMRSRGCEPNAITHNIIISALVKS-NNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKA 914

Query: 231  GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
            G  E+A K F EM++ +   P  V+ Y   +    +  ++D A +  + M  E   P LK
Sbjct: 915  GRSEQAMKIFEEMLD-YGCGPNSVI-YNILINGFGKSGEIDFACELFKKMVKEGIRPDLK 972

Query: 291  FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
             ++  ++ L        AVQ ++ + +  G  PD+++YN I   L K++R+ E    F E
Sbjct: 973  SYTILVECLCITGRIDEAVQYFEELKL-TGLDPDTVSYNFIINGLGKSRRLDEALSLFSE 1031

Query: 351  MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            M      P        I  L  A + ++A++++  +   G+ P   + N L+ G
Sbjct: 1032 MKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRG 1085



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 117/271 (43%), Gaps = 6/271 (2%)

Query: 158  CGAGKYDEAVMSFDVMSMH-GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDP 215
            C   K  +A   FD  + + G+   + + N L+  +    N T +ALE    +K     P
Sbjct: 771  CKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLL-GSNFTEKALELFEDMKSAGTHP 829

Query: 216  DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275
            +  ++ +LL+   K   + +    + EM  R      + + +   +  L++   +++AL 
Sbjct: 830  NNFTYNLLLDAHGKSKRINKLYDLYSEMRSR--GCEPNAITHNIIISALVKSNNLNKALD 887

Query: 276  FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
                +   +  PT   +   +D L+K   S  A+++++ M+ + G  P+S+ YN++    
Sbjct: 888  LYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDY-GCGPNSVIYNILINGF 946

Query: 336  IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
             K+  +    + F +M+K   +P   +    +  L      + A++ +  +   G+ P  
Sbjct: 947  GKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDT 1006

Query: 396  ASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
             S N ++ GL    RL +      EM NR I
Sbjct: 1007 VSYNFIINGLGKSRRLDEALSLFSEMKNRGI 1037



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/277 (19%), Positives = 124/277 (44%), Gaps = 5/277 (1%)

Query: 146  SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
            +L ++  + D   G+   ++A+  F+ M   G   +    N LL A  + + + ++  + 
Sbjct: 795  TLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSK-RINKLYDL 853

Query: 206  LNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
             + ++ +  +P+  +  I++    K  N+ +A   + E++   +++P     Y   +  L
Sbjct: 854  YSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSG-DFSPTPC-TYGPLIDGL 911

Query: 265  IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            ++  + ++A+K    M    C P    ++  ++   K  +   A +L+   MV  G  PD
Sbjct: 912  LKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFK-KMVKEGIRPD 970

Query: 325  SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
              +Y ++ ECL    R+ E  ++F E+      P  ++    I  L  +   + A+ +++
Sbjct: 971  LKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFS 1030

Query: 385  YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
             +   GI P   + N L++ L   G++    +  EE+
Sbjct: 1031 EMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEEL 1067



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 86/184 (46%), Gaps = 13/184 (7%)

Query: 116  WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
            +N++++  GK+G  +      + M ++G+   L ++  + +  C  G+ DEAV  F+ + 
Sbjct: 939  YNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELK 998

Query: 175  MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
            + G++ D V+ N +++ + +   +   AL   + +K + + PD  ++  L+      G V
Sbjct: 999  LTGLDPDTVSYNFIINGLGKSR-RLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKV 1057

Query: 234  EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV----DEALKFLRVMKGENCFPTL 289
            + A K + E+ +     P  V  Y      LIRG  +    D+A    + M    C P  
Sbjct: 1058 DVAVKMYEEL-QLVGLEPS-VFTYN----ALIRGHSLSGNKDQAFSVFKKMMVVGCSPNT 1111

Query: 290  KFFS 293
            + F+
Sbjct: 1112 ETFA 1115



 Score = 38.9 bits (89), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 1/120 (0%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            ++N +++ LGK+ R ++  +    MK  G+   L T+ ++      AGK D AV  ++ +
Sbjct: 1008 SYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEEL 1067

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             + G+E  V   N+L+       N+      F   +     P+ ++FA L   + + G V
Sbjct: 1068 QLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGLV 1127


>gi|302808035|ref|XP_002985712.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
 gi|300146621|gb|EFJ13290.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
          Length = 447

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 136/315 (43%), Gaps = 16/315 (5%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           ++  +   +C AG++ +A+   D M  +GV  +VV   +++  +C    + S+AL    R
Sbjct: 32  SYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLC-TAGKVSQALLHFRR 90

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + +   P+  +++ L++   K G   EA     EMV++   +P +V+ Y   +    + +
Sbjct: 91  IGEDCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKK-GCSP-NVVTYNALIDGFRKLE 148

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           ++DE L  L+ M    C   +  ++  LDI  K N    A +L + +        + +TY
Sbjct: 149 RLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNAL-----EKRNVVTY 203

Query: 329 NMIFECL--IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           N +F  L   +  R  E      +MI+   +P  +N  T + ML      + A ++   +
Sbjct: 204 NSLFTALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSM 263

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM----HKLKKAFYN 442
              G    + S   L+V   N GR  D       ML    ++   TM    HK  KA   
Sbjct: 264 YSQGCKTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKA--G 321

Query: 443 ESRSMRDIFDSLERR 457
           +      +F S+ +R
Sbjct: 322 DLHEAHQLFKSMYQR 336



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 140/341 (41%), Gaps = 39/341 (11%)

Query: 96  SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           S A+  FR  G     + Y ++ +VD L K+G+  + +  V  M + G   ++ T+ ++ 
Sbjct: 82  SQALLHFRRIGEDCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALI 141

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           D +    + DE +M    MS  G   DV+    +L   C+  N    A   LN ++K   
Sbjct: 142 DGFRKLERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKN-NSIDEAYRLLNALEKRNV 200

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
              +S    L   E +    EA     +M++  E    + + Y T L+ L +  ++DEA 
Sbjct: 201 VTYNSLFTALSTAEGD-RTTEALSLLEKMIQ--EGTRPNQVNYRTVLLMLCKNSRLDEAY 257

Query: 275 KFLRVMKGENC------FPTLKF-FSNA------LDILVKLNDSTHAVQLWDIMMVFH-- 319
           + L  M  + C      +  L   F+NA      L++L ++  S + +    + +V H  
Sbjct: 258 QVLLSMYSQGCKTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKF 317

Query: 320 -------------------GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
                              G+ P ++TYN +     K ++     K  H+MI+ +++P  
Sbjct: 318 CKAGDLHEAHQLFKSMYQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNV 377

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
           +   + I         E A  I+  +++NG  P   S   L
Sbjct: 378 ITYNSIIKSFCREQREEEARGIFQMMVDNGCFPDRVSYTTL 418


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 140/307 (45%), Gaps = 49/307 (15%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN- 207
           TF S+   +C  G+  EAV   + MS++ V  +V   N L+  +C+ E +  +A   L+ 
Sbjct: 231 TFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCK-EGEVKKATSVLSV 289

Query: 208 RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            +K+ V+P+  ++  L++G+     V +A   F  +  R      +V +Y   +  L + 
Sbjct: 290 MIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLR--GVTPNVHSYSVMINGLCKN 347

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM--MVFHGAFPDS 325
           K VDEA+K  + M  +N  P    +S+ +D L K   S     +WD++  +   G   + 
Sbjct: 348 KMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCK---SGRISDVWDLIDEINNRGQPANI 404

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TYN +   L KN   H+V+K                                AI +   
Sbjct: 405 ITYNSLLNGLCKN---HQVDK--------------------------------AIALLTK 429

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKL-KKAF 440
           + + GI P  ++   L+ GL   GRL D +R  +++L +     I +Y V ++ L K+ F
Sbjct: 430 MKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGF 489

Query: 441 YNESRSM 447
           ++E+ S+
Sbjct: 490 FDEALSL 496



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 124/277 (44%), Gaps = 37/277 (13%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N+++D L K G  ++  + + VM + GV  ++ T+ S+ D Y    + ++A   F+ 
Sbjct: 265 YTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNT 324

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           +S+ GV  +V + + +++ +C+ +        F     K + P+  +++ L++G  K G 
Sbjct: 325 ISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGR 384

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + +      E+  R +  P +++ Y + L  L +  QVD+A+  L  MK E   P +  +
Sbjct: 385 ISDVWDLIDEINNRGQ--PANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTY 442

Query: 293 SNALDILVK---LNDSTHAVQ------------LWDIM-------------------MVF 318
           +  +D L K   L D+    Q            ++ +M                   M  
Sbjct: 443 TTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMED 502

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           +G  PD++TY  +   L KN +  +  K   EMI  E
Sbjct: 503 NGCMPDAVTYETLISALFKNNKNGKAVKLLREMIARE 539



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 132/296 (44%), Gaps = 10/296 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T  ++    C  GK  EA+   D +       D V+  +L++ +C+   +T  AL+ L +
Sbjct: 125 TVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCK-SGETRAALQLLRK 183

Query: 209 VKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266
           ++ +  V PD   +  +++ + K+  V +A   + EM+ +  +   +V+ + + +     
Sbjct: 184 IEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIY--PNVVTFNSLIYGFCI 241

Query: 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
             Q+ EA+  L  M   N  P +  F+  +D L K  +   A  +  +M +  G  P+ +
Sbjct: 242 VGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVM-IKQGVEPNVV 300

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           TY  + +     K V++ +  F+ +      P   + +  I  L      + A++++  +
Sbjct: 301 TYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEM 360

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIYEVTMHKLKK 438
               + P   + + L+ GL   GR+SDV    +E+ NR     I+ Y   ++ L K
Sbjct: 361 HLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCK 416



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 124/298 (41%), Gaps = 7/298 (2%)

Query: 164 DEAVMSFD-VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFA 221
           D+AV SF+ ++ M+     +   N +LS++ +  N    A+ F  +++ K + P+  +F 
Sbjct: 34  DDAVSSFNHILHMNNHTPPIFEFNKILSSLVKM-NHFKIAISFSQQMELKGIQPEMFTFN 92

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           IL+  +     +  A     +++ +  + P+ V    T L  L    +V EAL F   + 
Sbjct: 93  ILINCFSHLCQLNFAFSMVAKIL-KLGYQPDTV-TVNTLLRGLCLNGKVKEALNFHDHVI 150

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            +        +   ++ L K  ++  A+QL   +       PD + Y  I +   K+K V
Sbjct: 151 RKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLV 210

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            +    + EMI  +  P  +   + I       + + A+ + N +  N + P   + N L
Sbjct: 211 IDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNIL 270

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY--NESRSMRDIFDSLERR 457
           + GL   G +         M+ + +    VT   L   ++   E    + +F+++  R
Sbjct: 271 IDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLR 328


>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 144/326 (44%), Gaps = 15/326 (4%)

Query: 128 RFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           +   ++ A ++M E  +++L     T+ ++ D+YC +   ++A+  +D M++  +  DVV
Sbjct: 64  KIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVV 123

Query: 184 AVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
               +++ +C+   +   A      ++++ V P+  S+A L++   KEGNV EA    G 
Sbjct: 124 TYTCIMNGLCKS-GKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGR 182

Query: 243 MVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299
           MV R   F+     V+ Y   +  L +    + A    +V+  E+  P    +S  +D  
Sbjct: 183 MVVRGIGFD-----VVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALIDGH 237

Query: 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            KL D      L   M   H  FP+ + Y+ I +   K   ++E      +M++    P 
Sbjct: 238 CKLGDVNKGELLLQEMEEKH-IFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPN 296

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
                T I     AD+  IA++++  +   G+       +  +  L+  GR+ +     +
Sbjct: 297 VFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFK 356

Query: 420 EMLNRRILIYEVTMHKLKKAFYNESR 445
           +M++R +L   V    +   F+   +
Sbjct: 357 DMMSRGLLPDRVNYTSMMDGFFKAGK 382



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 68/346 (19%), Positives = 151/346 (43%), Gaps = 17/346 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           ++ +VD   K G   +  + +R M +  +L ++  + ++ D Y  A +   A+  F  M 
Sbjct: 265 YSSIVDGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQRGIALDLFKEMK 324

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G+E++   ++S ++ + R          F + + + + PD  ++  +++G+ K G   
Sbjct: 325 SRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKES 384

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQVDEALKFLRVMKGENCFPTLKFFS 293
           +A     EM E+   +   V+AY   +  L + GK   E+  F   M+     P    F+
Sbjct: 385 DAFNIAQEMTEK--SSGFDVVAYNVLINGLFKLGKYESES--FHTGMRQLGLAPDSATFN 440

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             ++   K  +  +A++L + M  + G  P+S+T N++ + L     + +     ++M+ 
Sbjct: 441 TMINAYCKEGNLGNALKLLNEMKSY-GLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLV 499

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
             + PTP      +     +   ++ + + + ++  G+    ++ N L+     LG +  
Sbjct: 500 MGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRR 559

Query: 414 VRRFAEEMLNRRIL----IYEVTMHK------LKKAFYNESRSMRD 449
                ++M+ + IL     Y   +H       LKKAF   S+ + +
Sbjct: 560 ATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTE 605



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/301 (18%), Positives = 114/301 (37%), Gaps = 64/301 (21%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           L L T+ ++  ++C  G    A + F  M   G+  D++  N+L+   C   +       
Sbjct: 539 LDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAV 598

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
               + + V P+ +++ ILL G      ++EA     +M ER                  
Sbjct: 599 HSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKER------------------ 640

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV----KLNDSTHAVQLWDIMMVFHG 320
                                 P     +   DILV    K+ +    V+L+   M+  G
Sbjct: 641 -------------------GLVPN----ATTYDILVSGHGKIGNMKECVKLY-CEMITKG 676

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEP 376
             P + TYN++  C  K K++ + ++   EM   + +  P N +T   ++      + +P
Sbjct: 677 FVPKTRTYNVLISCFAKGKKMSQAKELMQEM---QVRGIPPNSSTYDILICGWYKLSKQP 733

Query: 377 EI-----------AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
           E+           A  ++  + E G +P E +   +   L   G+ +D +R   ++  ++
Sbjct: 734 ELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKKADAQRILNKLYKKK 793

Query: 426 I 426
           +
Sbjct: 794 V 794


>gi|224081016|ref|XP_002306265.1| predicted protein [Populus trichocarpa]
 gi|222855714|gb|EEE93261.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 166/420 (39%), Gaps = 40/420 (9%)

Query: 38  PRFPTHLDAPYISSSARIICEILAHASS--DDIESALACTGIIPTPDLVHEVL------- 88
           PR  T L     S+ A ++ +IL H  +    +ES+L   GI  TP L+H+ L       
Sbjct: 42  PRNDTLLPTLQPSNDADLLSQILLHHHNPFHAMESSLQLPGISLTPSLLHQTLLRLRHNS 101

Query: 89  --------------QLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
                           S D+P ++      +      +   +NLM+D+L K  +F+  W 
Sbjct: 102 KIALSLFHHSLSLPPTSTDNPPTSTGTSTTSADSSTATTVTYNLMIDILAKVRQFDVCWQ 161

Query: 135 AVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ-DVVAVNSLLSAI 192
            +  M +  V  +  TF  +      AG   +A+ +FD M     E  +      LL  +
Sbjct: 162 LIVEMDQRNVKPTSETFFVLIRRLVAAGLTRQAIRAFDDMESFVSEPVNETHFCFLLDTL 221

Query: 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           C+        +E  N+ K    P+   + +L+ GW K G ++ A +   E  ER      
Sbjct: 222 CKY-GYVKVGVEIFNKRKHRFSPNVKMYTVLIYGWCKIGRIDMAERFLKETGER--GIEA 278

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMK-GENCF---------PTLKFFSNALDILVKL 302
            V+ Y   L  + R   +    +F R +   EN F         P +  FS  L +  + 
Sbjct: 279 TVVTYNVLLNGICRRASLHPESRFERTITLAENLFDEMRERGIEPDVTSFSIVLHVYSRA 338

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
           +     +    +M    G  P  +TY  + +CL    R+ + E+   EM++N    T + 
Sbjct: 339 HKPELTLDKLKLMKE-KGICPSVVTYTSVVKCLCSCGRIEDAEELLGEMVRNGVSRTAVT 397

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEA-SANELLVGLRNLGRLSDVRRFAEEM 421
                   +   + E A++++  + E+G+  L   S N LL     L RL  V    E++
Sbjct: 398 YNCFFKEYMGRKDAESALKLYKKMREDGLGSLGLHSYNILLRMFMMLNRLDIVNEIWEDL 457



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 114/304 (37%), Gaps = 51/304 (16%)

Query: 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
            ++D L K G  +         K     ++  +  +   +C  G+ D A          G
Sbjct: 216 FLLDTLCKYGYVKVGVEIFNKRKHRFSPNVKMYTVLIYGWCKIGRIDMAERFLKETGERG 275

Query: 178 VEQDVVAVNSLLSAICRQ-----ENQTSRALEFLNRV-----KKIVDPDGDSFAILLEGW 227
           +E  VV  N LL+ ICR+     E++  R +     +     ++ ++PD  SF+I+L  +
Sbjct: 276 IEATVVTYNVLLNGICRRASLHPESRFERTITLAENLFDEMRERGIEPDVTSFSIVLHVY 335

Query: 228 EKE-----------------------------------GNVEEANKTFGEMVERFEWNPE 252
            +                                    G +E+A +  GEMV        
Sbjct: 336 SRAHKPELTLDKLKLMKEKGICPSVVTYTSVVKCLCSCGRIEDAEELLGEMVR--NGVSR 393

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN--ALDILVKLNDSTHAVQ 310
             + Y  F    +  K  + ALK  + M+ E+   +L   S    L + + LN      +
Sbjct: 394 TAVTYNCFFKEYMGRKDAESALKLYKKMR-EDGLGSLGLHSYNILLRMFMMLNRLDIVNE 452

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           +W+ +    G  PD  +Y M+   L + ++  E  KFF EMI+    P  +   T    L
Sbjct: 453 IWEDLKS-SGLGPDLDSYTMLIHGLCEKEKWREACKFFVEMIEKGLLPQKVTFETLYKGL 511

Query: 371 LDAD 374
           + +D
Sbjct: 512 IQSD 515


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 155/370 (41%), Gaps = 45/370 (12%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           QR+SP    +N ++  L K    ++    +  M + GV+    T+ SI   +C +G+  E
Sbjct: 117 QRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKE 176

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A++    M   GVE DVV  NSL+  +C+    T     F +  K+ + P+  ++  LL+
Sbjct: 177 AIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQ 236

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+  +G + E +     MV R   +P H + +   +    + ++V+EA+     M+ +  
Sbjct: 237 GYATKGALVEMHGLLDLMV-RNGIHPNHYV-FSILVCAYAKQEKVEEAMLVFSKMRQQGL 294

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN---------------- 329
            P    +   + IL K      A+  ++  M+  G  P ++ YN                
Sbjct: 295 NPNAVTYGAVIGILCKSGRVEDAMLYFE-QMIDEGLSPGNIVYNSLIHGLCTCNKWERAE 353

Query: 330 -MIFE------CL------------IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
            +I E      CL             K  RV E EK F  M++   +P  +  +T I   
Sbjct: 354 ELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 413

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRI 426
             A + + A ++   ++  G+ P   + + L+ G   + R+ D      EM    ++  I
Sbjct: 414 CLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDI 473

Query: 427 LIYEVTMHKL 436
           + Y + +  L
Sbjct: 474 ITYNIILQGL 483



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 150/349 (42%), Gaps = 10/349 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N++++ L    R ++    + +M +DG    P   +++++ + +   G  D+   ++
Sbjct: 52  FSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTY 111

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
           + M    +  +VV  NS+++A+C+ +    +A+E L   VK  V PD  ++  ++ G+  
Sbjct: 112 NEMLDQRISPNVVTYNSIIAALCKAQT-VDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCS 170

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G  +EA     +M  R +     V+ Y + +  L +  +  EA K    M      P +
Sbjct: 171 SGQPKEAIVFLKKM--RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEI 228

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             +   L              L D +MV +G  P+   ++++     K ++V E    F 
Sbjct: 229 TTYGTLLQGYATKGALVEMHGLLD-LMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFS 287

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           +M +    P  +     I +L  +   E A+  +  +++ G+ P     N L+ GL    
Sbjct: 288 KMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCN 347

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRD--IFDSLER 456
           +         EML+R I +  +  + +  +   E R +    +FD + R
Sbjct: 348 KWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVR 396



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 133/319 (41%), Gaps = 13/319 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG  L+   +N ++D   K GR  +      +M   GV   + T++++ D YC AGK DE
Sbjct: 362 RGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 421

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A      M   G++ D V  ++L++  C+        + F       V PD  ++ I+L+
Sbjct: 422 ATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQ 481

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  +      A + +  + +        +  Y   L  L + K  D+AL+  + +    C
Sbjct: 482 GLFQTRRTAAAKELYVGITK--SGRQLELSTYNIILHGLCKNKLTDDALRMFQNL----C 535

Query: 286 FPTLKF----FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
              LK     F+  +D L+K+  +  A  L+ +    +G  P+  TY ++ E +I    +
Sbjct: 536 LMDLKLEARTFNIMIDALLKVGRNDEAKDLF-VAFSSNGLVPNYWTYRLMAENIIGQGLL 594

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            E+++ F  M  N            +  LL   E   A    + I E     LEAS   L
Sbjct: 595 EELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKH-FSLEASTASL 653

Query: 402 LVGLRNLGRLSDVRRFAEE 420
            + L + G+  +  RF  E
Sbjct: 654 FIDLLSGGKYQEYHRFLPE 672



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 6/195 (3%)

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK--GENCFPTLKF 291
           E+A   F E++ R       V +Y   L  L    +  EAL+ L +M   G +C P +  
Sbjct: 34  EDARHVFDELLRR---GIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVS 90

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +S  ++   K  D       ++ M+      P+ +TYN I   L K + V +  +    M
Sbjct: 91  YSTVINGFFKEGDLDKTYSTYNEMLD-QRISPNVVTYNSIIAALCKAQTVDKAMEVLTTM 149

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +K+   P  +   + +     + +P+ AI     +  +G+ P   + N L+  L   GR 
Sbjct: 150 VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRC 209

Query: 412 SDVRRFAEEMLNRRI 426
           ++ R+  + M  R +
Sbjct: 210 TEARKIFDSMTKRGL 224



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 1/212 (0%)

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  S+ ILL G   E   +EA +    M +     P  V++Y T +    +   +D+  
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTY 108

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
                M  +   P +  +++ +  L K      A+++    MV  G  PD +TYN I   
Sbjct: 109 STYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVL-TTMVKSGVMPDCMTYNSIVHG 167

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
              + +  E   F  +M  +  +P  +   + +  L        A +I++ + + G+ P 
Sbjct: 168 FCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPE 227

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
             +   LL G    G L ++    + M+   I
Sbjct: 228 ITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 259


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 149/354 (42%), Gaps = 10/354 (2%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + QR+ P    +  ++   GK+G     +     MK   ++    T+ S+    C AGK 
Sbjct: 349 KNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKV 408

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAI 222
            EA   F  M   G++ D V   +L+   C+   +   A    N+ V+K + P+  ++  
Sbjct: 409 VEARKLFSEMLSKGLKPDEVTYTALIDGYCKA-GEMKEAFSLHNQMVEKGLTPNVVTYTA 467

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           L++G  K G V+ AN+   EM E+    P +V  Y   +  L +   +++A+K +  M  
Sbjct: 468 LVDGLCKCGEVDIANELLHEMSEK-GLQP-NVCTYNALINGLCKVGNIEQAVKLMEEMDL 525

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
              FP    ++  +D   K+ +   A +L  IM+   G  P  +T+N++      +  + 
Sbjct: 526 AGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLD-KGLQPTIVTFNVLMNGFCMSGMLE 584

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           + E+    M+     P      + +      +     IEI+  +   G++P   + N L+
Sbjct: 585 DGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILI 644

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSL 454
            G      + +     +EM+ +   +   + + L K FY   +    R +F+ +
Sbjct: 645 KGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEM 698



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 170/404 (42%), Gaps = 44/404 (10%)

Query: 91  SYDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLP 148
           S+D   +A   FR ++  G   +  ++N+++ +L + G+ ++  + +  M+  G V  + 
Sbjct: 229 SFDGIRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVV 288

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +++ I D YC   +  + +   + +   G++ +    NS++S +C+   +   A + L  
Sbjct: 289 SYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKT-GRVVEAEQVLRV 347

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K + + PD   +  L+ G+ K GNV    K F EM +R +  P+ V  Y + +  L + 
Sbjct: 348 MKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEM-KRKKIVPDFV-TYTSMIHGLCQA 405

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +V EA K    M  +   P    ++  +D   K  +   A  L +  MV  G  P+ +T
Sbjct: 406 GKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHN-QMVEKGLTPNVVT 464

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI-------------------- 367
           Y  + + L K   V    +  HEM +   QP        I                    
Sbjct: 465 YTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMD 524

Query: 368 -----------TMLLDA----DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
                      T ++DA     E   A E+   +L+ G+ P   + N L+ G    G L 
Sbjct: 525 LAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLE 584

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSL 454
           D  R  + ML++ I+    T + L K +   N  R+  +I+  +
Sbjct: 585 DGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGM 628



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 113/277 (40%), Gaps = 4/277 (1%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            F   F     AG   EA   FD +  +GV   V + N  L+ +    +    A      
Sbjct: 183 VFDVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGIRTAFRVFRE 242

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
             ++ V  +  S+ I+L    + G V+EA+    +M   F  N   V++Y   +    + 
Sbjct: 243 YSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQM--EFRGNVPDVVSYSVIVDGYCQV 300

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           +Q+ + LK +  ++ +   P    +++ +  L K      A Q+  +M      FPD++ 
Sbjct: 301 EQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKN-QRIFPDNVV 359

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y  +     K+  V    K F EM + +  P  +   + I  L  A +   A ++++ +L
Sbjct: 360 YTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEML 419

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             G+ P E +   L+ G    G + +      +M+ +
Sbjct: 420 SKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEK 456



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 5/169 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +  ++D   K G   +    +R+M + G+  ++ TF  + + +C +G  ++       M
Sbjct: 534 TYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWM 593

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G+  +    NSL+   C + N  +    +     + V PD +++ IL++G  K  N+
Sbjct: 594 LDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNM 653

Query: 234 EEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +EA     EMVE+ F        +Y + +    + K+ +EA K    M+
Sbjct: 654 KEAWFLHKEMVEKGFSLTAA---SYNSLIKGFYKRKKFEEARKLFEEMR 699


>gi|255660914|gb|ACU25626.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 481

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 135/287 (47%), Gaps = 9/287 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLM--VDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  +  S   A+ FFRW  R           +  +++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHAAKTS-EHALQFFRWVERSNLFEHDRETHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY  AG   E+V  F  M   GVE+ + + ++L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   + + ++P   +F +++ G+   G ++ A + F +M  R E +P
Sbjct: 125 IMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKMDTAMRFFEDMKSR-EISP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K++DEA K+   MKG+N  PT+  ++  +   V ++    A++L
Sbjct: 184 D-VVTYNTMINGCYRVKKMDEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVHDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
            + M  + G  P+++TY+ +   L    ++ E +    EM+     P
Sbjct: 243 VEEMKGY-GIKPNAITYSTLLPGLCNAGKMSEAQSILKEMVDKYIAP 288



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 106/235 (45%), Gaps = 29/235 (12%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K G V+E+ K F +M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELGVER------TIKSYDAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLK---------FFSNALDILVKLNDSTHAVQL 311
              ++R  +   A ++   M  E   PT           F S  +D  ++  +   + ++
Sbjct: 122 FKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKMDTAMRFFEDMKSREI 181

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
                      PD +TYN +     + K++ E EK+F EM     +PT +   T I   +
Sbjct: 182 S----------PDVVTYNTMINGCYRVKKMDEAEKYFVEMKGKNIEPTVVTYTTLIKGYV 231

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
             D+   A+ +   +   GI P   + + LL GL N G++S+ +   +EM+++ I
Sbjct: 232 SVDQVHDALRLVEEMKGYGIKPNAITYSTLLPGLCNAGKMSEAQSILKEMVDKYI 286



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 83/179 (46%), Gaps = 23/179 (12%)

Query: 135 AVRVMKEDGVLSLPT----FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV------- 183
           A  V+K    LS+PT    +  + +++C AG++D AV   D +    +E+D++       
Sbjct: 310 AADVLKAMIRLSVPTEAGHYGVLIENFCKAGQHDRAVKLLDKL----IEKDIILRPQSTL 365

Query: 184 -----AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
                A N ++  +C    QT++A   + ++ K+   D  +   L+ G+ +EG+ + A +
Sbjct: 366 HMEPSAYNPMIEYLC-SNGQTAKAEALVRQLLKLGVQDTTALNTLIRGYAQEGSPDSAFE 424

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
               M+ R + + E   AY+  + + ++  +  +A   L  M   +  P    F + ++
Sbjct: 425 LLKIMLRR-KVDSEKS-AYDALVQSYLKKNEPADAKAALDSMIENDHLPDSSLFRSVME 481


>gi|356571194|ref|XP_003553764.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g04760, chloroplastic-like [Glycine max]
          Length = 531

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 160/392 (40%), Gaps = 43/392 (10%)

Query: 79  PTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWN-AVR 137
           P+P + H   + +   P +     R   +G       +N+++  L   G          +
Sbjct: 90  PSPQIPHPSAKPTESIPHAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQ 149

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           ++KE+   ++ T+  + ++    G  DEA+   D M    ++ DV   NS++  +CR E 
Sbjct: 150 LLKENFNPTVVTYTILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSII-XMCR-EG 207

Query: 198 QTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
              RA E ++ +  K    D  ++ ILL     +G  E   +   +MV +      +V+ 
Sbjct: 208 YVDRAFEVISSISSKGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAK--GCEANVVT 265

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           Y   + +L R  +V+E +  L+ MK +   P    +   + +L K      A+++ D+M 
Sbjct: 266 YSVLISSLCRDGKVEEGVGLLKDMKKKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVM- 324

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML------ 370
           +  G  PD + YN I  CL K KR  E    F ++ +    P   +  T  + L      
Sbjct: 325 ISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHK 384

Query: 371 ----------LDADEPEIAI--EIWNYILENGIL------------------PLEASANE 400
                     LD  +P++     + + +  +G++                  P   S N 
Sbjct: 385 VRALGMILEMLDXVDPDVIAYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNI 444

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
           +L+GL  +GR+SD       M+++  L  E T
Sbjct: 445 VLLGLCRVGRVSDATEVLAAMVDKGCLPNETT 476



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 7/204 (3%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G     Y ++ ++ VL K GR +     + VM  DG +  +  + +I    C   + DE
Sbjct: 292 KGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADE 351

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  F+ +   G   +  + N++ SA+    ++  RAL  +  +   VDPD  ++  L+ 
Sbjct: 352 ALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKV-RALGMILEMLDXVDPDVIAYNSLIS 410

Query: 226 GWEKEGNVEEANKTFGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
              ++G V+EA +   +M +E  E  P  V++Y   L+ L R  +V +A + L  M  + 
Sbjct: 411 CLCRDGMVDEAIELLVDMEMESSECKPS-VVSYNIVLLGLCRVGRVSDATEVLAAMVDKG 469

Query: 285 CFP---TLKFFSNALDILVKLNDS 305
           C P   T  F    +     LND+
Sbjct: 470 CLPNETTYTFLIEGIGFGGWLNDA 493


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/376 (21%), Positives = 155/376 (41%), Gaps = 36/376 (9%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASI-FDSYCGAGKYDEAVMSFDVMS 174
           ++++V    + G  E+    +  M   G  +  T  +I  ++ C  G+ D+A    + M 
Sbjct: 288 FDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMG 347

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
            +G   D ++  ++L  +CR E +   A E L   V+K   P+  +F   +    ++G +
Sbjct: 348 SYGCSPDTISYTTVLKGLCRAE-RWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLI 406

Query: 234 EEANKTFGEM----------------------------VERFEWNP--EHVLAYETFLIT 263
           E+A     +M                            +E F   P   + + Y T L  
Sbjct: 407 EQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTG 466

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L   +++D A + L  M  ++C P +  F+  +    +      A++L + MM  HG  P
Sbjct: 467 LCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMME-HGCTP 525

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           + +TYN + + +  +    E  +  H ++ N   P  +  ++ I +L   D  E AI+++
Sbjct: 526 NLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMF 585

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
           + + + G+ P     N++L+ L           F   M++   +  E+T   L +   NE
Sbjct: 586 HIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANE 645

Query: 444 S--RSMRDIFDSLERR 457
              +  RD+   L  R
Sbjct: 646 DFLKETRDLLRELCSR 661



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 124/278 (44%), Gaps = 7/278 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  + +L + G  EQ    +  M E G  +++ T+ ++ + +C  G+ D A+  F  M 
Sbjct: 393 FNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP 452

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
               + + +   +LL+ +C  E   + A      ++K   P+  +F +L+  + ++G ++
Sbjct: 453 ---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMD 509

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA +   +M+E       +++ Y T L  +      +EAL+ L  +      P +  +S+
Sbjct: 510 EAIELVEQMME--HGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSS 567

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            + +L + +    A++++ I+    G  P ++ YN I   L K         FF  M+ N
Sbjct: 568 IIGVLSREDRVEEAIKMFHIVQDL-GMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSN 626

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
              P  L   T I  L + D  +   ++   +   G+L
Sbjct: 627 GCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVL 664



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/375 (20%), Positives = 150/375 (40%), Gaps = 40/375 (10%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG + S   + ++++ + K+  F Q    +  M+  G   ++ T+  I +  C  G+ D+
Sbjct: 174 RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDD 233

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    + +S +G + D V+  ++L  +C  +        F   ++K   P+  +F +L+ 
Sbjct: 234 AREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVR 293

Query: 226 GWEKEGNVEEANKTFGEM----------------------------------VERFEWNP 251
            + + G VE A +   +M                                  +  +  +P
Sbjct: 294 FFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSP 353

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + + +Y T L  L R ++ ++A + L+ M  +NC P    F+  + IL +      A  L
Sbjct: 354 DTI-SYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATML 412

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
            +  M  HG   + +TYN +        RV    + F+ M     +P  +   T +T L 
Sbjct: 413 IE-QMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLC 468

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 431
           +A+  + A E+   +L+    P   + N L+      G + +     E+M+        +
Sbjct: 469 NAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLI 528

Query: 432 TMHKLKKAFYNESRS 446
           T + L     N+  S
Sbjct: 529 TYNTLLDGITNDCNS 543



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/269 (20%), Positives = 110/269 (40%), Gaps = 6/269 (2%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           +  + C  G+  +A          G   DV A N+L++  CR   Q   A   +  +   
Sbjct: 84  LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRY-GQLDAARRLIASMP-- 140

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           V PD  ++  ++ G    G V EA     +M+ R    P  V+ Y   L  + +     +
Sbjct: 141 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHR-GCQPS-VVTYTVLLEAVCKSTGFGQ 198

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A++ L  M+ + C P +  ++  ++ + +      A +  +  +  +G  PD+++Y  + 
Sbjct: 199 AMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLN-RLSSYGFQPDTVSYTTVL 257

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
           + L   KR  +VE+ F EM++    P  +     +         E AI++   +  +G  
Sbjct: 258 KGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCA 317

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEM 421
                 N ++  +   GR+ D  +F   M
Sbjct: 318 ANTTLCNIVINTICKQGRVDDAFQFLNNM 346



 Score = 45.1 bits (105), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 69/187 (36%), Gaps = 4/187 (2%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V AY T +    R  Q+D A + +  M      P    ++  +  L        A+ L D
Sbjct: 113 VFAYNTLVAGYCRYGQLDAARRLIASMPVA---PDAYTYTPIIRGLCDRGRVGEALSLLD 169

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
            M+   G  P  +TY ++ E + K+    +  +   EM      P  +     I  +   
Sbjct: 170 DML-HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCRE 228

Query: 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 433
              + A E  N +   G  P   S   +L GL    R  DV     EM+ +  +  EVT 
Sbjct: 229 GRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTF 288

Query: 434 HKLKKAF 440
             L + F
Sbjct: 289 DMLVRFF 295



 Score = 38.1 bits (87), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 11/147 (7%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++D +  +   E+    +  +  +GV   + T++SI        + +EA+  F ++ 
Sbjct: 530 YNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQ 589

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNV 233
             G+    V  N +L A+C++ N T  A++F    V     P+  ++  L+EG   E  +
Sbjct: 590 DLGMRPKAVIYNKILLALCKRCN-TDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFL 648

Query: 234 EEANKTFGEMVERF--------EWNPE 252
           +E      E+  R         EW P+
Sbjct: 649 KETRDLLRELCSRGVLNKNLLEEWRPK 675


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 140/304 (46%), Gaps = 12/304 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSF 170
           +++N+++  L   G+  Q  N +R+M E G +  P    + ++ D +   G  ++A   F
Sbjct: 149 FSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLF 208

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEK 229
             M   G+  D+V  NS++ A+C+      +A  FL + V K V P+  ++  L+ G+  
Sbjct: 209 KEMVQRGIPPDLVTYNSVVHALCKAR-AMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSS 267

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL--RVMKGENCFP 287
            G  +EA + F EM  R    P+ V+     + +L +  ++ EA        MKG+N  P
Sbjct: 268 TGQWKEAVRVFKEM-RRHSILPD-VVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN--P 323

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
            +  ++  L+             L+D+M+   G  PD  T+N+  +       + +    
Sbjct: 324 DVFSYNIMLNGYATKGCLVDMTDLFDLML-GDGIAPDFYTFNVQIKAYANCGMLDKAMII 382

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
           F+EM  +  +P  +   T I  L    + + A+E +N +++ G+ P + + N L+ G   
Sbjct: 383 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCT 442

Query: 408 LGRL 411
            G L
Sbjct: 443 HGIL 446



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 119/290 (41%), Gaps = 20/290 (6%)

Query: 185 VNSLLSAICRQENQTS------RALEFLNRVK------KIVDPDGDSFAILLEGWEKEGN 232
           +N  L+A+ R  +  +       A+   NR        +++ P   ++AIL++   +   
Sbjct: 33  LNGFLAALARAPSSAACGSGPALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHR 92

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKF 291
            E A   FG+++ R     + ++A    L      K+ DEAL  L     E  C P +  
Sbjct: 93  PELALAFFGQLL-RTGLRVDAIIA-SHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFS 150

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAF--PDSLTYNMIFECLIKNKRVHEVEKFFH 349
           ++  L  L     S  A  L   MM   G    PD + YN + +   K   V++    F 
Sbjct: 151 YNILLKSLCNQGKSGQADNLLR-MMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFK 209

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           EM++    P  +   + +  L  A   + A      ++   +LP   + N L+ G  + G
Sbjct: 210 EMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTG 269

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAF--YNESRSMRDIFDSLERR 457
           +  +  R  +EM    IL   VT+  L  +   Y + +  RD+FD++  +
Sbjct: 270 QWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMK 319



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 6/157 (3%)

Query: 81  PDLVHEVLQLS----YDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           PD+V   + +     Y     A D F   A +GQ    +++N+M++     G    M + 
Sbjct: 288 PDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDL 347

Query: 136 VRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
             +M  DG+     TF     +Y   G  D+A++ F+ M  HGV+ DVV   ++++A+CR
Sbjct: 348 FDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 407

Query: 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG 231
                    +F   + + V PD  ++  L++G+   G
Sbjct: 408 IGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHG 444


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 150/381 (39%), Gaps = 13/381 (3%)

Query: 72  LACTGIIPTPDLVHEVLQLSYDSP--SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRF 129
           L+  G  P       ++Q  YD+     A  FF  A     L   ++  ++  L  + R 
Sbjct: 325 LSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEA-----LDVISYTTVIKGLADSKRI 379

Query: 130 EQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
           ++       +K  G   ++  + ++ D    AG+ ++ + +F+ MS             +
Sbjct: 380 DEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVV 439

Query: 189 LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
           +  +C+ +        F   V+K   PD  ++  L++G+ K   ++EA K    M+ +  
Sbjct: 440 IDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTK-- 497

Query: 249 WNPE-HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307
             PE   + Y + +    +   ++EA + +  M+   C P L  F++ L   +    +  
Sbjct: 498 -GPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEE 556

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
           A Q+    M   G  PD + Y  + + L    RV E    F  MI+    P  L   T I
Sbjct: 557 AYQVL-TEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTII 615

Query: 368 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
                    E A EI   + ++G+ P   + N L+ G   L R+       + M+   I 
Sbjct: 616 QNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIK 675

Query: 428 IYEVTMHKLKKAFYNESRSMR 448
              VT + L    + + ++ R
Sbjct: 676 PNAVTFNVLMHGLFKDGKTDR 696



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 120/271 (44%), Gaps = 6/271 (2%)

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKK 211
           + +  C A K D+A+  F  M   G E  +V+ N+++S +    ++   A +F N  +  
Sbjct: 26  VLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGL-ASIDKMDEAYKFFNSMIDN 84

Query: 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
             +PD  +F  L+ G+ K G  +  +    + ++RF  +   V  Y + +    +   +D
Sbjct: 85  GCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPD---VFLYTSVIHGYCKAGDLD 141

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
              K L  M    C P    +   +D L KL     A +L++ M    G   D +T+  +
Sbjct: 142 TGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRK-SGCLGDYVTFMTL 200

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
            E L  + ++ E  + + EMI+  ++P      + I  L  A + + A EI+  ++   +
Sbjct: 201 IEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKV 260

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEML 422
                + N L+ G   LGR+ D  +   +M+
Sbjct: 261 ATSRVAYNSLMDGYCKLGRVDDGLKLLLQMV 291



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 124/301 (41%), Gaps = 40/301 (13%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  ++D+L   GR  +  +    M E G      T+ +I  ++   G  + A    ++M+
Sbjct: 576 YTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMA 635

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNV 233
             GV  D  A NSL+    + E +  +A    +R V   + P+  +F +L+ G  K+G  
Sbjct: 636 KSGVGPDCFAYNSLMDGYVKLE-RVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKT 694

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A   F EM+E+ E  P  +++Y   +  L +  +V EA                  FS
Sbjct: 695 DRAFSLFKEMLEKDEV-PPTLVSYTILIDGLGKAGRVSEA------------------FS 735

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
              +                  M+  G  P+  TY  +   L K  R+ E +K   +M+K
Sbjct: 736 QFQE------------------MIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVK 777

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               P     +  IT L+D+   + A +++  +++ G  P E +   L  G R  GR  D
Sbjct: 778 LGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALD 837

Query: 414 V 414
           +
Sbjct: 838 L 838



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 89/410 (21%), Positives = 150/410 (36%), Gaps = 87/410 (21%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + +++D L K             M + G +    T+ ++ D +  A K DEA    DVM 
Sbjct: 436 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 495

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV--------DPDGDSFAILLEG 226
             G E   V   S++   C+        L+ +N  K+++        +P    F  LL  
Sbjct: 496 TKGPEPTAVTYGSIVHGFCK--------LDMINEAKEVIAQMRERGCEPGLFIFTSLLSY 547

Query: 227 WEKEGNVEEANKTFGEMVER----------------FEWN--PE--HV------------ 254
           +  +G  EEA +   EM  R                F     PE  HV            
Sbjct: 548 YLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPD 607

Query: 255 -LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
            L Y T +    +   V+ A + L +M      P    +++ +D  VKL     A  ++D
Sbjct: 608 ALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYD 667

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI-KNEWQPTPLNCATAITMLLD 372
             MV  G  P+++T+N++   L K+ +       F EM+ K+E  PT ++    I  L  
Sbjct: 668 -RMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGK 726

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE------------- 419
           A     A   +  +++ GI+P   +   L+  L   GR+ + ++  E             
Sbjct: 727 AGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQA 786

Query: 420 ----------------------EMLNRRILIYEVTMHKLKKAFYNESRSM 447
                                 EM+ R     EVT   L++ F    R++
Sbjct: 787 YSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRAL 836



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 5/240 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           + S+   YC AG  D      + M   G   D  A   L+  +C+   +   A E   R+
Sbjct: 127 YTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKL-GRVDEAYELFERM 185

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +K     D  +F  L+E     G ++EA + + EM+ER  + P ++   ++ +  L +  
Sbjct: 186 RKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIER-GYEP-YLEVQDSLIFALCKAG 243

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +VDEA +  + +  +    +   +++ +D   KL      ++L  + MV    FPD  TY
Sbjct: 244 KVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLL-LQMVECDNFPDIQTY 302

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N++     +  R+ +  + F  +     +P      T I  L DA   E A   ++  L+
Sbjct: 303 NILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALD 362



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 123/290 (42%), Gaps = 20/290 (6%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAI 222
           +EA+     M   G+  DVV  N +L+ +C+   +  +A+E FL       +P   S+  
Sbjct: 2   EEALDCLKEMHTTGLMPDVVNCNIVLNGLCKA-RKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ-------VDEALK 275
           ++ G      ++EA K F  M++     P+ V+A+ T +    +  Q       +++ALK
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDN-GCEPD-VIAFTTLIHGFCKAGQPQVGHMLLNQALK 118

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335
             R        P +  +++ +    K  D     ++ + M+   G  PD+  Y ++ + L
Sbjct: 119 RFR--------PDVFLYTSVIHGYCKAGDLDTGFKILEEMLA-AGCIPDAAAYFVLIDPL 169

Query: 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395
            K  RV E  + F  M K+      +   T I  L +  + + A E++  ++E G  P  
Sbjct: 170 CKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYL 229

Query: 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
              + L+  L   G++ +     + ++ +++    V  + L   +    R
Sbjct: 230 EVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGR 279



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 4/134 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++ +++D LGK GR  + ++  + M + G++    T+ S+  S   AG+  EA    + M
Sbjct: 716 SYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDM 775

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG-- 231
              GV  DV A ++L++ +       +    F   +K+   P+  ++ +L  G+   G  
Sbjct: 776 VKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRA 835

Query: 232 -NVEEANKTFGEMV 244
            ++E   + F + V
Sbjct: 836 LDLEAVKQHFSQGV 849


>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16420, mitochondrial; Flags: Precursor
 gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 535

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 133/336 (39%), Gaps = 17/336 (5%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           DLVH + + S +S     + F              NL+V  L K    E  +  +  +  
Sbjct: 172 DLVHAMFKNSKESFGITPNIF------------TCNLLVKALCKKNDIESAYKVLDEIPS 219

Query: 142 DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
            G++ +L T+ +I   Y   G  + A    + M   G   D      L+   C+    + 
Sbjct: 220 MGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSE 279

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
            A    +  K  ++P+  ++ +++    KE    EA   F EM+ER  + P+  L  +  
Sbjct: 280 AATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLER-SFMPDSSLCCKV- 337

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +  L    +VDEA    R M   NC P     S  +  L K    T A +L+D      G
Sbjct: 338 IDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFE--KG 395

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
           + P  LTYN +   + +   + E  + + +M + + +P        I  L      +  +
Sbjct: 396 SIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGV 455

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
            +   +LE G  P + +   L  GL+ LG+  D  +
Sbjct: 456 RVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMK 491



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 139/332 (41%), Gaps = 12/332 (3%)

Query: 96  SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS--I 153
           SS   F R    G + S  + N +++VL +N RF+ +    +  KE   ++   F    +
Sbjct: 138 SSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLL 197

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA-ICRQENQTSRAL--EFLNRVK 210
             + C     + A    D +   G+  ++V   ++L   + R + ++++ +  E L+R  
Sbjct: 198 VKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGW 257

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
               PD  ++ +L++G+ K G   EA     +M E+ E  P  V  Y   +  L + K+ 
Sbjct: 258 Y---PDATTYTVLMDGYCKLGRFSEAATVMDDM-EKNEIEPNEV-TYGVMIRALCKEKKS 312

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
            EA      M   +  P        +D L + +    A  LW  M+  +   PD+   + 
Sbjct: 313 GEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLK-NNCMPDNALLST 371

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +   L K  RV E  K F E  K    P+ L   T I  + +  E   A  +W+ + E  
Sbjct: 372 LIHWLCKEGRVTEARKLFDEFEKGSI-PSLLTYNTLIAGMCEKGELTEAGRLWDDMYERK 430

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
             P   + N L+ GL   G + +  R  EEML
Sbjct: 431 CKPNAFTYNVLIEGLSKNGNVKEGVRVLEEML 462



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 163/374 (43%), Gaps = 18/374 (4%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-------TF 150
           A+  F +AG+      + ++    +L K  R  + ++ V  +  D   S P        F
Sbjct: 65  ALQIFLYAGKSHPGFTHNYDTYHSILFKLSR-ARAFDPVESLMADLRNSYPPIKCGENLF 123

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
             +  +Y  AG+Y+ ++  F  +   GV++ V ++N+LL+ + + +        F N  +
Sbjct: 124 IDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKE 183

Query: 211 KI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
              + P+  +  +L++   K+ ++E A K   E +      P +++ Y T L   +    
Sbjct: 184 SFGITPNIFTCNLLVKALCKKNDIESAYKVLDE-IPSMGLVP-NLVTYTTILGGYVARGD 241

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           ++ A + L  M     +P    ++  +D   KL   + A  + D M   +   P+ +TY 
Sbjct: 242 MESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEK-NEIEPNEVTYG 300

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
           ++   L K K+  E    F EM++  + P    C   I  L +  + + A  +W  +L+N
Sbjct: 301 VMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKN 360

Query: 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI---LIYEVTMHKL-KKAFYNESR 445
             +P  A  + L+  L   GR+++ R+  +E     I   L Y   +  + +K    E+ 
Sbjct: 361 NCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSIPSLLTYNTLIAGMCEKGELTEAG 420

Query: 446 SMRDIFDSLERRCK 459
            + D  D  ER+CK
Sbjct: 421 RLWD--DMYERKCK 432


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 172/393 (43%), Gaps = 18/393 (4%)

Query: 54  RIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY---DSPSSAVDFFRWA-GRGQ 109
           R +C++  + S+  +   +   GI+P   ++ E+L  SY       SA +F       G 
Sbjct: 117 RNLCKVGLNDSAKIVFDCMRSDGILPDSSIL-ELLVSSYARMGKLDSAKNFLNEVHCYGI 175

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED----GVLSLPTFASIFDSYCGAGKYDE 165
           ++SP+ +N ++++L K    ++   AV + +E      V  + +F  +    C  G+ D+
Sbjct: 176 KVSPFVYNNLLNMLVKQNLVDE---AVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDK 232

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL--NRVKKIVDPDGDSFAIL 223
           A   F  M   G   D+V+ N+L++  CR  N+ S+  + L  + + K V PD  ++  +
Sbjct: 233 AFEFFQNMGNFGCFPDIVSYNTLINGFCRV-NEISKGHDLLKEDMLIKGVSPDVITYTSI 291

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G+ K G+++ A++ F EMV      P     +   +    +   +  A+     M   
Sbjct: 292 ISGYCKLGDMKAASELFDEMVSS-GIKPND-FTFNVLIDGFGKVGNMRSAMVMYEKMLLL 349

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
            C P +  F++ +D   +  +    ++LW+ M V     P+  TY ++   L K  R+ E
Sbjct: 350 GCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKV-RNLSPNVYTYAVLINALCKENRIRE 408

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
              F   +  +E  P P      I     A + + A  I   + E    P + +   L++
Sbjct: 409 ARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILII 468

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           G    GR+ +      +M+    +  E+T++ L
Sbjct: 469 GNCMKGRMVEAISTFYKMIEINCVPDEITINSL 501



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 129/312 (41%), Gaps = 10/312 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  +  + C  G  D A + FD M   G+  D   +  L+S+  R   +   A  FLN 
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARM-GKLDSAKNFLNE 169

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           V    +      +  LL    K+  V+EA   F E +E + + P+ V ++   +  L R 
Sbjct: 170 VHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPY-FVPD-VYSFNILIRGLCRI 227

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            ++D+A +F + M    CFP +  ++  ++   ++N+ +    L    M+  G  PD +T
Sbjct: 228 GEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVIT 287

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y  I     K   +    + F EM+ +  +P        I           A+ ++  +L
Sbjct: 288 YTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKML 347

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNE 443
             G LP   +   L+ G    G ++   +  EEM    L+  +  Y V ++ L K   N 
Sbjct: 348 LLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKE--NR 405

Query: 444 SRSMRDIFDSLE 455
            R  R+    L+
Sbjct: 406 IREARNFLRHLK 417



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 101/236 (42%), Gaps = 49/236 (20%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + + + +N+++D  GK G           M   G L  + TF S+ D YC  G+ ++ 
Sbjct: 315 GIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQG 374

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
           +  ++ M +  +  +V     L++A+C+ EN+   A  FL  +K   V P    +  +++
Sbjct: 375 LKLWEEMKVRNLSPNVYTYAVLINALCK-ENRIREARNFLRHLKSSEVVPKPFIYNPVID 433

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI----RGKQVDEALKFLRVMK 281
           G+ K G V+EAN    EM E+ +  P+ +    TF I +I    +G+ V+    F ++++
Sbjct: 434 GFCKAGKVDEANFIVAEMQEK-KCRPDKI----TFTILIIGNCMKGRMVEAISTFYKMIE 488

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             NC P                                    D +T N +  CL+K
Sbjct: 489 -INCVP------------------------------------DEITINSLISCLLK 507


>gi|255660984|gb|ACU25661.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 376

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 164/364 (45%), Gaps = 20/364 (5%)

Query: 80  TPD-LVHEVLQLSYDSPSSAVDFFR-W---AGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           +PD +V+  +   Y   +   D F  W      G R S  ++N+M+  L  N + +++ +
Sbjct: 22  SPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNIMMRGLFDNDKVDEVIS 80

Query: 135 AVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
              +MK+ G V    T+  +   +C  G  D+++   ++    G   D  A +++++ +C
Sbjct: 81  IWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYSAMINGLC 140

Query: 194 RQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           ++ N   RA+  LN  +K    P+   +  L+ G       E+A + F EM      +P 
Sbjct: 141 KEAN-LDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPT 198

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            ++ Y T +  L + +   EA   ++ +  +   P +  +S  +  L   +    A+QLW
Sbjct: 199 -IITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLW 257

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML-- 370
           +  +   G  PD   +N++   L    ++      + +M  N W+  P N  +  T++  
Sbjct: 258 N-QVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDM--NRWKCAP-NLVSHNTLMEG 313

Query: 371 --LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 428
              D D    A+ IW  IL NG+ P   S N  L GL +  R+SD   F  + + ++I++
Sbjct: 314 FYKDGDIRN-ALVIWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVL 372

Query: 429 YEVT 432
            ++T
Sbjct: 373 TKIT 376


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 150/336 (44%), Gaps = 9/336 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           WN M+ V GK G  + +   +  MK  GV LS  T+ ++  +Y   G    A   +D M 
Sbjct: 429 WNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMI 488

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G    +   N+LL+ + RQ + ++        +K    P+  S+++LL+ + K GN  
Sbjct: 489 SSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAA 548

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
                  E+     + P  V+   T +I   + ++++   K  + +K +   P L  F++
Sbjct: 549 GIESIEKEVYVGTIF-PSWVI-LRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNS 606

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            L +  K    + A +++D +    G  PD +TYN + +   K+    E EK   ++  +
Sbjct: 607 MLAMYAKNGLYSKATEMFDSIKQ-SGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSS 665

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
           + +P  ++  T I         + A  I + ++ +G+ P   + + L+ G  +L   ++ 
Sbjct: 666 QVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEA 725

Query: 415 RRFAEEMLNRRILIYEVTMHKLKKAF-----YNESR 445
           R     M++  +   E+T  ++  ++     Y+E+R
Sbjct: 726 REVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAR 761



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 133/319 (41%), Gaps = 7/319 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK-YDE 165
           G RL   A+  ++  L + GR+E+       ++  GV+ ++ T+  + D Y   G+ +  
Sbjct: 175 GSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPR 234

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILL 224
            V   + M   GVE D    +++++A C ++    +A+ F   +K     P   ++  LL
Sbjct: 235 IVALLEEMRAAGVEPDDFTASTVIAA-CGRDGLLDQAVAFFEDLKARGHVPCVVTYNALL 293

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           + + K GN  EA +   EM E     P+ V  Y     T  R    +EA K L  M  + 
Sbjct: 294 QVFGKAGNYTEALRVLKEM-EDSGCQPDAV-TYNELAGTYARAGFFEEAAKCLDTMTSKG 351

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P    ++  +     +     A+ L+D M   +G  P+  TYN+IF  L K  R   +
Sbjct: 352 LLPNTFTYNTVMTAYANVGRVDEALALFDRMKK-NGYVPNVNTYNLIFGMLGKKSRFTAM 410

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            +   EM ++   P  +   T + +       +    + N +   G+     + N L+  
Sbjct: 411 LEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISA 470

Query: 405 LRNLGRLSDVRRFAEEMLN 423
               G  +   +  +EM++
Sbjct: 471 YGRCGSRTYAFKMYDEMIS 489



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 108/264 (40%), Gaps = 7/264 (2%)

Query: 98  AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           AV FF     RG       +N ++ V GK G + +    ++ M++ G      T+  +  
Sbjct: 270 AVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAG 329

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVD 214
           +Y  AG ++EA    D M+  G+  +    N++++A      +   AL   +R+KK    
Sbjct: 330 TYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYA-NVGRVDEALALFDRMKKNGYV 388

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+ +++ ++     K+       +   EM  R    P  V  + T L    +    D   
Sbjct: 389 PNVNTYNLIFGMLGKKSRFTAMLEMLEEM-SRSGCTPNRV-TWNTMLAVCGKRGMEDYVT 446

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           + L  MK      +   ++  +    +    T+A +++D  M+  G  P   TYN +   
Sbjct: 447 RVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYD-EMISSGFTPCLTTYNALLNV 505

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQP 358
           L +       +    +M+KN ++P
Sbjct: 506 LSRQGDWSTAQSIVSKMLKNGFKP 529



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/327 (18%), Positives = 120/327 (36%), Gaps = 41/327 (12%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK--EDGVLSLPTFASIFD 155
           A+   RWA         A  ++V  LG+ G+ + + + +  M       L +  + ++  
Sbjct: 129 ALALLRWASDEGAADAAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLH 188

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
           +   AG+Y+ A+  F  +   GV   +V  N +L    R      R +  L  ++   V+
Sbjct: 189 ALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVE 248

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  + + ++    ++G +++A   F ++  R   +   V+ Y   L    +     EAL
Sbjct: 249 PDDFTASTVIAACGRDGLLDQAVAFFEDLKAR--GHVPCVVTYNALLQVFGKAGNYTEAL 306

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           + L+ M+   C P                                    D++TYN +   
Sbjct: 307 RVLKEMEDSGCQP------------------------------------DAVTYNELAGT 330

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
             +     E  K    M      P      T +T   +    + A+ +++ + +NG +P 
Sbjct: 331 YARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPN 390

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEM 421
             + N +   L    R + +    EEM
Sbjct: 391 VNTYNLIFGMLGKKSRFTAMLEMLEEM 417


>gi|302785283|ref|XP_002974413.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
 gi|300158011|gb|EFJ24635.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
          Length = 447

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 137/315 (43%), Gaps = 16/315 (5%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           ++  +   +C AG++ +A+   D M  +GV  +VV   +++  +C    + S+AL    R
Sbjct: 32  SYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLC-TAGKVSQALLHFRR 90

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + +   P+  +++IL++   K G   EA     EMV++   +P +V+ Y   +    + +
Sbjct: 91  IGEDCAPNVYTYSILVDALCKSGQPHEAYGLVTEMVKK-GCSP-NVVTYNALIDGFRKLE 148

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           ++DE L  L+ M    C   +  ++  LDI  K N    A +L + +        + +TY
Sbjct: 149 RLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNAL-----EKRNVVTY 203

Query: 329 NMIFECL--IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           N +F  L   +  R  E      +MI+   +P  +N  T + ML      + A ++   +
Sbjct: 204 NSLFTALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSM 263

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM----HKLKKAFYN 442
              G    + S   L+V   + GR  D       ML    ++   TM    HK  KA   
Sbjct: 264 YSQGCKTDDVSYKILVVAFASAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKA--G 321

Query: 443 ESRSMRDIFDSLERR 457
           +      +F S+ +R
Sbjct: 322 DLHEAHQLFKSMCQR 336



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 140/343 (40%), Gaps = 39/343 (11%)

Query: 96  SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           S A+  FR  G     + Y ++++VD L K+G+  + +  V  M + G   ++ T+ ++ 
Sbjct: 82  SQALLHFRRIGEDCAPNVYTYSILVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALI 141

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           D +    + DE +M    MS  G   DV+    +L   C+  N    A   LN ++K   
Sbjct: 142 DGFRKLERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKN-NSIDEAYRLLNALEKRNV 200

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
              +S    L   E +    EA     +M++  E    + + Y T L+ L +  ++DEA 
Sbjct: 201 VTYNSLFTALSTAEGD-RTTEALSLLEKMIQ--EGTRPNQVNYRTVLLMLCKNSRLDEAY 257

Query: 275 KFLRVMKGENC-------------FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH-- 319
           + L  M  + C             F +     ++L++L ++  S + +    + +V H  
Sbjct: 258 QVLLSMYSQGCKTDDVSYKILVVAFASAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKF 317

Query: 320 -------------------GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
                              G+ P ++TYN +     K ++     K  H+MI+ +++P  
Sbjct: 318 CKAGDLHEAHQLFKSMCQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNV 377

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
           +   + I         E A  I+  ++++G  P   S   L +
Sbjct: 378 ITYNSIIKSFCREQREEEARGIFQMMVDSGCFPDRVSYTTLKI 420


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 172/393 (43%), Gaps = 18/393 (4%)

Query: 54  RIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY---DSPSSAVDFFRWA-GRGQ 109
           R +C++  + S+  +   +   GI+P   ++ E+L  SY       SA +F       G 
Sbjct: 117 RNLCKVGLNDSAKIVFDCMRSDGILPDSSIL-ELLVSSYARMGKLDSAKNFLNEVHCYGI 175

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED----GVLSLPTFASIFDSYCGAGKYDE 165
           ++SP+ +N ++++L K    ++   AV + +E      V  + +F  +    C  G+ D+
Sbjct: 176 KVSPFVYNNLLNMLVKQNLVDE---AVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDK 232

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL--NRVKKIVDPDGDSFAIL 223
           A   F  M   G   D+V+ N+L++  CR  N+ S+  + L  + + K V PD  ++  +
Sbjct: 233 AFEFFQNMGNFGCFPDIVSYNTLINGFCRV-NEISKGHDLLKEDMLIKGVSPDVITYTSI 291

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           + G+ K G+++ A++ F EMV      P     +   +    +   +  A+     M   
Sbjct: 292 ISGYCKLGDMKAASELFDEMVSS-GIKPND-FTFNVLIDGFGKVGNMRSAMVMYEKMLLL 349

Query: 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343
            C P +  F++ +D   +  +    ++LW+ M V     P+  TY ++   L K  R+ E
Sbjct: 350 GCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKV-RNLSPNVYTYAVLINALCKENRIRE 408

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
              F   +  +E  P P      I     A + + A  I   + E    P + +   L++
Sbjct: 409 ARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILII 468

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
           G    GR+ +      +M+    +  E+T++ L
Sbjct: 469 GNCMKGRMVEAISTFYKMIEINCVPDEITINSL 501



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 129/312 (41%), Gaps = 10/312 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  +  + C  G  D A + FD M   G+  D   +  L+S+  R   +   A  FLN 
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARM-GKLDSAKNFLNE 169

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           V    +      +  LL    K+  V+EA   F E +E + + P+ V ++   +  L R 
Sbjct: 170 VHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPY-FVPD-VYSFNILIRGLCRI 227

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            ++D+A +F + M    CFP +  ++  ++   ++N+ +    L    M+  G  PD +T
Sbjct: 228 GEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVIT 287

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y  I     K   +    + F EM+ +  +P        I           A+ ++  +L
Sbjct: 288 YTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKML 347

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKAFYNE 443
             G LP   +   L+ G    G ++   +  EEM    L+  +  Y V ++ L K   N 
Sbjct: 348 LLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKE--NR 405

Query: 444 SRSMRDIFDSLE 455
            R  R+    L+
Sbjct: 406 IREARNFLRHLK 417



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 101/236 (42%), Gaps = 49/236 (20%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G + + + +N+++D  GK G           M   G L  + TF S+ D YC  G+ ++ 
Sbjct: 315 GIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQG 374

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
           +  ++ M +  +  +V     L++A+C+ EN+   A  FL  +K   V P    +  +++
Sbjct: 375 LKLWEEMKVRNLSPNVYTYAVLINALCK-ENRIREARNFLRHLKSSEVVPKPFIYNPVID 433

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI----RGKQVDEALKFLRVMK 281
           G+ K G V+EAN    EM E+ +  P+ +    TF I +I    +G+ V+    F ++++
Sbjct: 434 GFCKAGKVDEANFIVAEMQEK-KCRPDKI----TFTILIIGNCMKGRMVEAISTFYKMIE 488

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             NC P                                    D +T N +  CL+K
Sbjct: 489 -INCVP------------------------------------DEITINSLISCLLK 507


>gi|255661020|gb|ACU25679.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 376

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 146/319 (45%), Gaps = 14/319 (4%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N+M+  L  NG+ +++     +MK+ G V    T+  +   +C  G  ++++   ++ 
Sbjct: 61  SFNIMMRGLFNNGKVDEVILIWELMKKSGFVEDSITYGILVHGFCKNGDVNKSLHVLEIA 120

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGN 232
            M G   D  A +++++ +C+ +++  +A+  LN  +K    P+   +  L+ G      
Sbjct: 121 EMKGGVLDAFAYSAMINGLCK-DSKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGSSK 179

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
            E+A + F EM      +P  ++ Y T +  L +G++  EA   ++ M  +   P +  +
Sbjct: 180 FEDAIRVFQEMGST-HCSPT-IITYNTLINGLCKGERFGEAYDLVKEMLEKGWNPCVITY 237

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           S  +  L   +    A+QLW   +   G  PD   +N++   L    ++      + +M 
Sbjct: 238 SMLIKGLCLCHKVEMALQLW-YQVTSKGFKPDIQMHNILIHGLCSVGKMQLALSLYFDM- 295

Query: 353 KNEWQPTPLNCATAITML----LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
            N W   P N  T  T++     D D    A+ IW  IL NG+ P   S N  L GL + 
Sbjct: 296 -NHWNCAP-NLVTHNTLMEGFYKDGDVRN-ALVIWARILRNGLQPDIISYNITLKGLCSC 352

Query: 409 GRLSDVRRFAEEMLNRRIL 427
            R+S    F  + L ++I+
Sbjct: 353 NRISGAILFLHDALTKKIV 371



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 135/334 (40%), Gaps = 38/334 (11%)

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170
           L    +N M++   + GR +  +    +M ++G  ++ +F  +       GK DE ++ +
Sbjct: 23  LDAVVYNTMLNGFFRVGRIKDCFELWELMGKEGSRNVASFNIMMRGLFNNGKVDEVILIW 82

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           ++M   G  +D +    L+   C+     +++L                   +LE  E +
Sbjct: 83  ELMKKSGFVEDSITYGILVHGFCKN-GDVNKSLH------------------VLEIAEMK 123

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G V +A                   AY   +  L +  ++D+A+  L  M    C P   
Sbjct: 124 GGVLDA------------------FAYSAMINGLCKDSKLDKAVSVLNGMIKSGCKPNAH 165

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            ++  ++ LV  +    A++++  M   H + P  +TYN +   L K +R  E      E
Sbjct: 166 VYNALINGLVGSSKFEDAIRVFQEMGSTHCS-PTIITYNTLINGLCKGERFGEAYDLVKE 224

Query: 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
           M++  W P  +  +  I  L    + E+A+++W  +   G  P     N L+ GL ++G+
Sbjct: 225 MLEKGWNPCVITYSMLIKGLCLCHKVEMALQLWYQVTSKGFKPDIQMHNILIHGLCSVGK 284

Query: 411 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444
           +        +M +       VT + L + FY + 
Sbjct: 285 MQLALSLYFDMNHWNCAPNLVTHNTLMEGFYKDG 318



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/258 (19%), Positives = 121/258 (46%), Gaps = 12/258 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G  L  +A++ M++ L K+ + ++  + +  M + G   +   + ++ +   G+ K+++
Sbjct: 123 KGGVLDAFAYSAMINGLCKDSKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGSSKFED 182

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV----DPDGDSFA 221
           A+  F  M        ++  N+L++ +C+ E    R  E  + VK+++    +P   +++
Sbjct: 183 AIRVFQEMGSTHCSPTIITYNTLINGLCKGE----RFGEAYDLVKEMLEKGWNPCVITYS 238

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           +L++G      VE A + + ++  +  + P+ +  +   +  L    ++  AL     M 
Sbjct: 239 MLIKGLCLCHKVEMALQLWYQVTSK-GFKPD-IQMHNILIHGLCSVGKMQLALSLYFDMN 296

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
             NC P L   +  ++   K  D  +A+ +W   ++ +G  PD ++YN+  + L    R+
Sbjct: 297 HWNCAPNLVTHNTLMEGFYKDGDVRNALVIWA-RILRNGLQPDIISYNITLKGLCSCNRI 355

Query: 342 HEVEKFFHEMIKNEWQPT 359
                F H+ +  +  PT
Sbjct: 356 SGAILFLHDALTKKIVPT 373


>gi|302142966|emb|CBI20261.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 157/367 (42%), Gaps = 19/367 (5%)

Query: 63  ASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA-----WN 117
           +S  +IE AL    +  T DLV +VL+        A  FF WA R    S Y+      N
Sbjct: 100 SSVSEIEGALHQCRLSLTDDLVLDVLKRHRSDWRPAYVFFNWASRCGIESGYSPGCGVHN 159

Query: 118 LMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176
            ++D+LG+  RF +M      M K  G+++  TF  + + Y  A K +EA +        
Sbjct: 160 EILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKTEEAAVKI-FYKRK 218

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEE 235
           G    + ++N +L+  C        A  F N  +     PD  ++ I +    K G +  
Sbjct: 219 GAW--IRSMNVILNGWC-VLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLST 275

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A K F  M E+   NP+ V      +  L   K++ EAL+ LR M   +C P +  +++ 
Sbjct: 276 AVKLFQAMWEK-GCNPD-VAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSL 333

Query: 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           +  L K+       +L D M    G  P++ TY  +   L   K+  EV      M +N 
Sbjct: 334 IKHLCKIQRFEKVYELLDDMEQ-KGCLPNARTYGYL---LKSTKKPEEVPGILERMERNG 389

Query: 356 WQPTPLNCATAITMLLDADEPEIAIE-IWNYILENGILPLEASANELLVGLRNLGRLSDV 414
            +    +C   I  L      E+ +    + +  NG+ P + +   ++ GL + GR+ D 
Sbjct: 390 CRMNS-DCYNLILKLYMDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKGRMDDA 448

Query: 415 RRFAEEM 421
             + ++M
Sbjct: 449 LSYFKQM 455



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 19/229 (8%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+    +S   AGK   AV  F  M   G   DV   N ++ A+C ++ +   ALE L  
Sbjct: 259 TYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCFKK-RIPEALEVLRE 317

Query: 209 V-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           + ++   PD  ++  L++   K    E+  +   +M ++       +    T+   L   
Sbjct: 318 MNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQK-----GCLPNARTYGYLLKST 372

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN-DSTHAVQLWDIM--MVFHGAFPD 324
           K+ +E    L  M+   C    +  S+  ++++KL  D  + ++L   +  M  +G  PD
Sbjct: 373 KKPEEVPGILERMERNGC----RMNSDCYNLILKLYMDWGYELKLRSTLDEMERNGMGPD 428

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373
             TY ++   L    R+ +   +F +M      P P       T+L++A
Sbjct: 429 QRTYTIMIHGLYDKGRMDDALSYFKQMTLMGMVPEP-----RTTLLVNA 472


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 161/394 (40%), Gaps = 18/394 (4%)

Query: 78  IPTPDLVHEVLQLSYDSPS---SAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMW 133
           +P P      L L++ S      AV+ F R      R + + +N +  VL   G      
Sbjct: 140 LPAPSAAFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYNAVFQVLVDRGVILLAL 199

Query: 134 NAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192
                M   G L +  T+  + D  C  G   +A+  FD M   G+  DV     LLS++
Sbjct: 200 ALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSL 259

Query: 193 CRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           C  E +   A   L  +K+    PD  ++ + L G  K G V+EA   F E+++   +  
Sbjct: 260 C-NEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRF-ELLQDGGFTL 317

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
             ++ Y   +  L +  + DE L +   M G++  P +  ++  +    +   +  A  L
Sbjct: 318 -GLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLL 376

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
            D  M   G  PD+  YN + + L     +   +    EM++N            I  L 
Sbjct: 377 LD-EMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLC 435

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE--EMLNRRILIY 429
                + A+++++ + E+G  P   + N L+ GL   G L + R      EM N   L  
Sbjct: 436 KKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKMEMGNNPSLFL 495

Query: 430 EVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 463
            +T+   +     ++ S+R + D +   C++ Q+
Sbjct: 496 RLTLGANQ---VRDTESLRKLVDGM---CQSGQV 523



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 139/348 (39%), Gaps = 25/348 (7%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----TFASIFDSYCGAGKYDEAVMSFD 171
           + +++  L   GR E     +  MKE+G    P    T+       C AG+ DEA   F+
Sbjct: 252 YTVLLSSLCNEGRIEDAGRLLCSMKENGC---PPDEVTYTVFLSGLCKAGRVDEAFHRFE 308

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKE 230
           ++   G    ++  + L+  +  Q  +    L +    + K + PD   + IL+  + + 
Sbjct: 309 LLQDGGFTLGLIGYSCLIDGL-FQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEA 367

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G  ++A     EM ++  + P+    Y T L  L     +D A   +  M   N      
Sbjct: 368 GRTKDAFLLLDEMKDK-GFVPD-TFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDST 425

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
             +  +  L K      A+Q++D  M  HG  P  +TYN + + L +   + E    FH+
Sbjct: 426 THNIMICGLCKKGLIDKAMQVFD-EMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHK 484

Query: 351 M---------IKNEWQPTPLNCATAITMLLD----ADEPEIAIEIWNYILENGILPLEAS 397
           M         ++       +    ++  L+D    + +   A ++   I+E+G++P   +
Sbjct: 485 MEMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVT 544

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            N L+ GL     L    R  +E+  + I   E+T   L    +   R
Sbjct: 545 YNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHR 592



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 149/351 (42%), Gaps = 22/351 (6%)

Query: 81  PDLVHEVLQLSYDSPSSAVD--FFRW---AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNA 135
           PD V   + LS    +  VD  F R+      G  L    ++ ++D L + GRF++  + 
Sbjct: 282 PDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSY 341

Query: 136 VRVMKEDGVLSLPTFASIF-DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
              M    +    T  +I    +  AG+  +A +  D M   G   D    N+LL A+  
Sbjct: 342 YTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFD 401

Query: 195 QENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
             N   RA   ++  ++  V  D  +  I++ G  K+G +++A + F EM E    +P  
Sbjct: 402 VGN-IDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEH-GCHPT- 458

Query: 254 VLAYETFLITLIRGKQVDEA-LKFLRVMKGEN--CFPTLKFFSNAL---DILVKLND--- 304
           V+ Y   +  L R   ++EA + F ++  G N   F  L   +N +   + L KL D   
Sbjct: 459 VMTYNALIDGLYRAGMLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDTESLRKLVDGMC 518

Query: 305 -STHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
            S   ++ + ++  ++  G  PD +TYN +   L K K +    + F E+      P  +
Sbjct: 519 QSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEI 578

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
              T I  L  A     A  ++  IL +G  P     N ++  L  + +LS
Sbjct: 579 TYGTLIDGLWRAHRENDATMLFQNILRSGGFPSLPIYNTMMRSLCRMKKLS 629



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 103/259 (39%), Gaps = 6/259 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +   + D  C +G+  +A      +   GV  DVV  N+L++ +C+ +N       F   
Sbjct: 509 SLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKEL 568

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
             K + PD  ++  L++G  +     +A   F  ++    +    +  Y T + +L R K
Sbjct: 569 QLKGISPDEITYGTLIDGLWRAHRENDATMLFQNILRSGGFPSLPI--YNTMMRSLCRMK 626

Query: 269 QVDEALKFL--RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326
           ++ +A+      + K  N  P  +  +NA              +L  I  V+    P+  
Sbjct: 627 KLSQAINLWLDYLPKKYNLSPEDEVIANARKCFEDGFLDETVKELIKIDQVYGSLNPNPY 686

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           T  +I  C +  +++ +  + FH + +     TP  CA  I  L        A++I  Y 
Sbjct: 687 TIWVIGLCQV--RKIDDALRIFHILEEFGIVVTPACCALLINYLCWDRNLNAAVDIMMYT 744

Query: 387 LENGILPLEASANELLVGL 405
           L    +  +   N LL  L
Sbjct: 745 LSKRFIVSQPVGNRLLRSL 763


>gi|259489858|ref|NP_001159344.1| uncharacterized protein LOC100304439 [Zea mays]
 gi|223943533|gb|ACN25850.1| unknown [Zea mays]
          Length = 322

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 108/250 (43%), Gaps = 5/250 (2%)

Query: 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204
           LS  TF+++  SY  +   D+AV  F+ +   G  Q     N+LL A+C   N T  A +
Sbjct: 8   LSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALCANGNFTG-AYK 66

Query: 205 FLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            L R+ +K V PD  +F+ L++ W   G ++EA     +M  R    P  V   +  +  
Sbjct: 67  LLRRMARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGRGLRPP--VRGRDLLVDG 124

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L+R   +++A  F   M  E   P +  F++  + L    D   AV L        G  P
Sbjct: 125 LVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDVDFAVSLLADASS-RGLCP 183

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D  TY ++   + K  ++ E  + F+  +++  +P P   A  I  L  A     A   +
Sbjct: 184 DISTYKVMLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLYAAIIKALCKAGRFADAFAFF 243

Query: 384 NYILENGILP 393
             +   G  P
Sbjct: 244 GDMKTKGHPP 253



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 3/196 (1%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWN-AVRVMKEDGVLSLPTFASIFDSYCGAGKY 163
           AGRG R      +L+VD L + G  EQ    A+R+ KE  +  + TF S+ ++ C AG  
Sbjct: 107 AGRGLRPPVRGRDLLVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDV 166

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           D AV      S  G+  D+     +L A+ +          F   V+    P    +A +
Sbjct: 167 DFAVSLLADASSRGLCPDISTYKVMLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLYAAI 226

Query: 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283
           ++   K G   +A   FG+M  + + +P +   Y   +   +RG +  EA  +L  M   
Sbjct: 227 IKALCKAGRFADAFAFFGDM--KTKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEA 284

Query: 284 NCFPTLKFFSNALDIL 299
              P    FS  +D L
Sbjct: 285 GFTPRAPTFSAVVDGL 300


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 134/289 (46%), Gaps = 6/289 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + + Y++ ++VD   K G+ ++ +N +  M  DG+  +   F  +  ++C   +  E
Sbjct: 418 KGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPE 477

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILL 224
           AV  F  M   G + DV   NSL+S +C + ++   AL  L + + + V  +  ++  L+
Sbjct: 478 AVEIFREMPRKGCKPDVYTFNSLISGLC-EVDEIKHALWLLRDMISEGVVANTVTYNTLI 536

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
             + + G ++EA K   EMV  F+ +P   + Y + +  L R  +VD+A      M  + 
Sbjct: 537 NAFLRRGEIKEARKLVNEMV--FQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P+    +  ++ L +      AV+ +   MV  G+ PD +T+N +   L +  R+ + 
Sbjct: 595 HAPSNISCNILINGLCRSGMVEEAVE-FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDG 653

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
              F ++      P  +   T ++ L        A  + +  +E+G +P
Sbjct: 654 LTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVP 702



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 164/379 (43%), Gaps = 49/379 (12%)

Query: 76  GIIPTPDLVHEVLQ--LSYDSPSSAVDFF-RWAGRGQRLSPYAWNLMVDVLGKNGRFEQM 132
           G +P  +  ++V+     +D  + A     R   RG       +  +++ L K GR +  
Sbjct: 282 GCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAA 341

Query: 133 WNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEA--VMSFDVMSMHGVEQDVVAVNSLL 189
            +   R+ K + V+    F ++   +   G+ D+A  V+S D+++ +G+  DV   NSL+
Sbjct: 342 KDLFYRIPKPEIVI----FNTLIHGFVTHGRLDDAKAVLS-DMVTSYGIVPDVCTYNSLI 396

Query: 190 SAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
               + E     ALE L+ ++ K   P+  S+ IL++G+ K G ++EA     EM    +
Sbjct: 397 YGYWK-EGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSA--D 453

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
               + + +   +    +  ++ EA++  R M  + C P +  F++ +  L ++++  HA
Sbjct: 454 GLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHA 513

Query: 309 VQLWDIM----------------------------------MVFHGAFPDSLTYNMIFEC 334
           + L   M                                  MVF G+  D +TYN + + 
Sbjct: 514 LWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKG 573

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L +   V +    F +M+++   P+ ++C   I  L  +   E A+E    ++  G  P 
Sbjct: 574 LCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPD 633

Query: 395 EASANELLVGLRNLGRLSD 413
             + N L+ GL   GR+ D
Sbjct: 634 IVTFNSLINGLCRAGRIED 652



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 132/310 (42%), Gaps = 8/310 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +    C   + +EA    + M + G   D +    L++ +C+   +   A +   R
Sbjct: 289 TFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKI-GRVDAAKDLFYR 347

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K   P+   F  L+ G+   G +++A     +MV  +   P+ V  Y + +    +  
Sbjct: 348 IPK---PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPD-VCTYNSLIYGYWKEG 403

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            V  AL+ L  M+ + C P +  ++  +D   KL     A  + + M    G  P+++ +
Sbjct: 404 LVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSA-DGLKPNTVGF 462

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           N +     K  R+ E  + F EM +   +P      + I+ L + DE + A+ +   ++ 
Sbjct: 463 NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 522

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY--NESRS 446
            G++    + N L+      G + + R+   EM+ +   + E+T + L K      E   
Sbjct: 523 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDK 582

Query: 447 MRDIFDSLER 456
            R +F+ + R
Sbjct: 583 ARSLFEKMLR 592



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 131/280 (46%), Gaps = 8/280 (2%)

Query: 80  TPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVR 137
           TP  ++++L+L  +  S++++ F W G   G R S   + +++  LG NG F+ +   + 
Sbjct: 77  TPFQLYKLLELPLNV-STSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLI 135

Query: 138 VMKEDG-VLSLPTFASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
            MK++G V     F SI   Y  AG   +   +  ++ +++  E    + N +L  +   
Sbjct: 136 QMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSG 195

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255
                 A  F + + + + P   +F ++++ +     ++ A     +M  +    P  V+
Sbjct: 196 NCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMT-KHGCVPNSVI 254

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315
            Y+T + +L +  +V+EAL+ L  M    C P  + F++ +  L K +    A ++ + M
Sbjct: 255 -YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRM 313

Query: 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           ++  G  PD +TY  +   L K  RV   +  F+ + K E
Sbjct: 314 LI-RGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPE 352



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 7/242 (2%)

Query: 98  AVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFD 155
           AV+ FR   R G +   Y +N ++  L +    +     +R M  +GV++   T+ ++ +
Sbjct: 478 AVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLIN 537

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVD 214
           ++   G+  EA    + M   G   D +  NSL+  +CR  E   +R+L F   ++    
Sbjct: 538 AFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSL-FEKMLRDGHA 596

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P   S  IL+ G  + G VEEA +   EMV R   +   ++ + + +  L R  ++++ L
Sbjct: 597 PSNISCNILINGLCRSGMVEEAVEFQKEMVLR--GSTPDIVTFNSLINGLCRAGRIEDGL 654

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
              R ++ E   P    F+  +  L K      A  L D   +  G  P+  T++++ + 
Sbjct: 655 TMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLD-EGIEDGFVPNHRTWSILLQS 713

Query: 335 LI 336
           +I
Sbjct: 714 II 715



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 80/215 (37%), Gaps = 2/215 (0%)

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           F  ++  ++K G   +  +   EM   +   P    +Y   L  L+ G     A      
Sbjct: 149 FISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFK-SYNVVLEILVSGNCHKVAANVFYD 207

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M      PTL  F   +     +N+   A+ L   M   HG  P+S+ Y  +   L K  
Sbjct: 208 MLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTK-HGCVPNSVIYQTLIHSLSKCN 266

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           RV+E  +   EM      P        I  L   D    A ++ N +L  G  P + +  
Sbjct: 267 RVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYG 326

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
            L+ GL  +GR+   +     +    I+I+   +H
Sbjct: 327 YLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIH 361


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 127/272 (46%), Gaps = 22/272 (8%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y ++++VD L K+ + +Q  N + +M + GV  ++ T+ +I D YC   + ++A+  F+V
Sbjct: 183 YTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNV 242

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK----KIVDPDGDSFAILLEGWE 228
           M   GVE +V   N +++ +C+++    R  E +N  K    K ++PD  ++ IL++G  
Sbjct: 243 MVQEGVEPNVWCYNIIINGLCKKK----RVDEAMNLFKEMHWKKINPDVVTYNILIDGLC 298

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           K G +  + +   EM  R       ++ Y + L  L +   +D+A+  ++ +K +   P 
Sbjct: 299 KLGKISTSLELVDEM--RSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPN 356

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL-----TYNMIFECLIKNKRVHE 343
           +  ++  +D L K        +L D  ++F     +       TYN++   L K     E
Sbjct: 357 VCTYTTLIDGLCKDG------RLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDE 410

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375
                  M  N   P  ++  T I  L +  E
Sbjct: 411 ALALLSRMEDNACIPDAVSYETIIYALSEKGE 442



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 137/319 (42%), Gaps = 9/319 (2%)

Query: 105 AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKY 163
              G +L   ++ ++++ L K G       A++++++  V   +  +++I DS C     
Sbjct: 107 VAHGFKLDQVSYAILMNGLCKMGETRA---AMQMLRKTWVNADVVMYSTIIDSLCKGKFV 163

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAI 222
            +A   +  M   G+  +V   + L+ A+C+ + +  +A+  L  + KK V P+  ++  
Sbjct: 164 TDAYRLYSEMIAKGIFPNVYTFSILVDALCK-DRKGKQAMNLLAMMMKKGVKPNVVTYGA 222

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +++G+     V +A   F  MV+  E    +V  Y   +  L + K+VDEA+   + M  
Sbjct: 223 IMDGYCLVNQVNKALNIFNVMVQ--EGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHW 280

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +   P +  ++  +D L KL   + +++L D M    G   D +TYN +   L KN  + 
Sbjct: 281 KKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSI-GKTVDIITYNSLLHALCKNHHLD 339

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           +      E+     QP      T I  L      E A  I+  IL  G      + N ++
Sbjct: 340 QAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMI 399

Query: 403 VGLRNLGRLSDVRRFAEEM 421
            GL   G   +       M
Sbjct: 400 NGLCKKGLFDEALALLSRM 418



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 142/339 (41%), Gaps = 46/339 (13%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF ++    C  G+  EA++  D +  HG + D V+   L++ +C+   +T  A++ L  
Sbjct: 82  TFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKM-GETRAAMQMLR- 139

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            K  V+ D   ++ +++   K   V +A + + EM+ +  +   +V  +   +  L + +
Sbjct: 140 -KTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIF--PNVYTFSILVDALCKDR 196

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +  +A+  L +M  +   P +  +   +D    +N    A+ ++++ MV  G  P+   Y
Sbjct: 197 KGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNV-MVQEGVEPNVWCY 255

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI------ 382
           N+I   L K KRV E    F EM   +  P  +     I  L    +   ++E+      
Sbjct: 256 NIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRS 315

Query: 383 ---------WNYIL--------------------ENGILPLEASANELLVGLRNLGRLSD 413
                    +N +L                    + GI P   +   L+ GL   GRL D
Sbjct: 316 IGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLED 375

Query: 414 VRRFAEEMLNR----RILIYEVTMHKL-KKAFYNESRSM 447
                +E+L       +  Y V ++ L KK  ++E+ ++
Sbjct: 376 AYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALAL 414



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 124/294 (42%), Gaps = 12/294 (4%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  I  S      Y  A+  F  +  +G++  +V +  L++  C     T      L ++
Sbjct: 13  FNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITF-LFSILTKI 71

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            K+  +P+  +F  L++G    G   EA   F + V    +  + V +Y   +  L +  
Sbjct: 72  LKMGYEPNSITFTTLIKGMCLNGQAYEA-LLFHDHVVAHGFKLDQV-SYAILMNGLCKMG 129

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +   A++ LR          +  +S  +D L K    T A +L+   M+  G FP+  T+
Sbjct: 130 ETRAAMQMLRKTWVN---ADVVMYSTIIDSLCKGKFVTDAYRLYS-EMIAKGIFPNVYTF 185

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
           +++ + L K+++  +       M+K   +P  +     +      ++   A+ I+N +++
Sbjct: 186 SILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQ 245

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKK 438
            G+ P     N ++ GL    R+ +     +EM    +N  ++ Y + +  L K
Sbjct: 246 EGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCK 299


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 145/326 (44%), Gaps = 12/326 (3%)

Query: 107 RGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKY 163
           + + L P  Y +N  +  L K  R E+    +  + E G++ +  T+ ++ D  C  G  
Sbjct: 279 KDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDL 338

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAI 222
           D+A    D M   G+   V   N L+ A+   E +   A + +  ++ K V+PD  ++ I
Sbjct: 339 DKAFAYRDEMMNRGIVASVFTYNLLIHAL-FLEKRIEEAEDMIKEMREKGVEPDVVTYNI 397

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI--RGKQVDEALKFLRVM 280
            + G+ + GN ++A   F EMVE+   N    +   T LI +   R +  +   KF + +
Sbjct: 398 QINGYCRCGNAKKALSLFDEMVEK---NIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSI 454

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
           K E   P +  F+  +D      +   A QL    M      PD +T+N + +   + ++
Sbjct: 455 K-EGMLPDIIMFNALIDGHCVNGNIDRAFQLLK-EMDNAKVVPDEVTFNTLMQGYCRERK 512

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
           V E +K   EM +   +P  ++  T I+      + + A+E+++ +L  G  P   + N 
Sbjct: 513 VEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNA 572

Query: 401 LLVGLRNLGRLSDVRRFAEEMLNRRI 426
           L+ G   +G          EM ++ I
Sbjct: 573 LIQGYSKIGEADHAEELLREMQSKGI 598



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 115/293 (39%), Gaps = 39/293 (13%)

Query: 106 GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYD 164
            RG   S + +NL++  L    R E+  + ++ M+E GV   + T+    + YC  G   
Sbjct: 350 NRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAK 409

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           +A+  FD M    +   V    SL+    ++   +    +F   +K+ + PD   F  L+
Sbjct: 410 KALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALI 469

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G    GN++ A +   EM +  +  P+ V  + T +    R ++V+EA K L  MK   
Sbjct: 470 DGHCVNGNIDRAFQLLKEM-DNAKVVPDEV-TFNTLMQGYCRERKVEEAKKLLDEMKE-- 525

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
                                              G  PD ++YN +     K   + + 
Sbjct: 526 ----------------------------------RGIKPDHISYNTLISGYSKRGDMKDA 551

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
            + F EM+   + PT L     I       E + A E+   +   GI P +++
Sbjct: 552 LEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDST 604



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 128/314 (40%), Gaps = 5/314 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+ TF  + +  C  GK+ +A      M ++GV+ +VV  N++++  C +    + +  F
Sbjct: 216 SIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIF 275

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
                K + PD  ++   +    KE  +EEA+    +++E       + + Y   +    
Sbjct: 276 KTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLE--SGLVPNAVTYNALIDGCC 333

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
               +D+A  +   M       ++ F  N L   + L       +     M   G  PD 
Sbjct: 334 NKGDLDKAFAYRDEMMNRGIVASV-FTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDV 392

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TYN+      +     +    F EM++   +PT     + I +    +    A E +  
Sbjct: 393 VTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKK 452

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            ++ G+LP     N L+ G    G +    +  +EM N +++  EVT + L + +  E +
Sbjct: 453 SIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERK 512

Query: 446 --SMRDIFDSLERR 457
               + + D ++ R
Sbjct: 513 VEEAKKLLDEMKER 526



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/313 (19%), Positives = 120/313 (38%), Gaps = 44/313 (14%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMH--------------------------------- 176
           F  +  +YC   K DEA+   ++M  +                                 
Sbjct: 150 FDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMV 209

Query: 177 --GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNV 233
              ++  +V  N +++ +CR E +  +A +F+  ++   V P+  ++  ++ G+   G  
Sbjct: 210 KMNIKSSIVTFNIMINILCR-EGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKF 268

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E A+K F  M ++    P+    Y +F+  L + ++++EA   L  +      P    ++
Sbjct: 269 EAASKIFKTMKDK-NLKPD-CYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYN 326

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D      D   A    D MM   G      TYN++   L   KR+ E E    EM +
Sbjct: 327 ALIDGCCNKGDLDKAFAYRDEMMN-RGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMRE 385

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
              +P  +     I         + A+ +++ ++E  I P   +   L+       R+S+
Sbjct: 386 KGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSE 445

Query: 414 VRRFAEEMLNRRI 426
               AEE   + I
Sbjct: 446 ----AEEKFKKSI 454



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 93/242 (38%), Gaps = 37/242 (15%)

Query: 240 FGEM-VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP----------- 287
           F E+ + R   N +  L ++  L    + ++ DEAL+ L +MK     P           
Sbjct: 132 FNELSLARNRLNVKTTLVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSL 191

Query: 288 -----TLKFFSNALDILVKLNDSTHAVQLWDIM-------------------MVFHGAFP 323
                 +K      + +VK+N  +  V  ++IM                   M  +G  P
Sbjct: 192 LLKLNKIKMAWFVYEEMVKMNIKSSIVT-FNIMINILCREGKWKKAKDFIGHMEVYGVKP 250

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           + +TYN +        +     K F  M     +P      + I+ L      E A  + 
Sbjct: 251 NVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVL 310

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
             +LE+G++P   + N L+ G  N G L     + +EM+NR I+    T + L  A + E
Sbjct: 311 CKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLE 370

Query: 444 SR 445
            R
Sbjct: 371 KR 372


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 150/336 (44%), Gaps = 9/336 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           WN M+ V GK G  + +   +  MK  GV LS  T+ ++  +Y   G    A   +D M 
Sbjct: 429 WNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMI 488

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G    +   N+LL+ + RQ + ++        +K    P+  S+++LL+ + K GN  
Sbjct: 489 SSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAA 548

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
                  E+     + P  V+   T +I   + ++++   K  + +K +   P L  F++
Sbjct: 549 GIESIEKEVYVGTIF-PSWVI-LRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNS 606

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            L +  K    + A +++D +    G  PD +TYN + +   K+    E EK   ++  +
Sbjct: 607 MLAMYAKNGLYSKATEMFDSIKQ-SGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSS 665

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
           + +P  ++  T I         + A  I + ++ +G+ P   + + L+ G  +L   ++ 
Sbjct: 666 QVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEA 725

Query: 415 RRFAEEMLNRRILIYEVTMHKLKKAF-----YNESR 445
           R     M++  +   E+T  ++  ++     Y+E+R
Sbjct: 726 REVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAR 761



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 133/319 (41%), Gaps = 7/319 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK-YDE 165
           G RL   A+  ++  L + GR+E+       ++  GV+ ++ T+  + D Y   G+ +  
Sbjct: 175 GSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPR 234

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILL 224
            V   + M   GVE D    +++++A C ++    +A+ F   +K     P   ++  LL
Sbjct: 235 IVALLEEMRAAGVEPDDFTASTVIAA-CGRDGLLDQAVAFFEDLKARGHVPCVVTYNALL 293

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           + + K GN  EA +   EM E     P+ V  Y     T  R    +EA K L  M  + 
Sbjct: 294 QVFGKAGNYTEALRVLKEM-EDSGCQPDAV-TYNELAGTYARAGFFEEAAKCLDTMTSKG 351

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P    ++  +     +     A+ L+D M   +G  P+  TYN+IF  L K  R   +
Sbjct: 352 LLPNTFTYNTVMTAYANVGRVDEALALFDRMKK-NGYVPNVNTYNLIFGMLGKKSRFTAM 410

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            +   EM ++   P  +   T + +       +    + N +   G+     + N L+  
Sbjct: 411 LEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISA 470

Query: 405 LRNLGRLSDVRRFAEEMLN 423
               G  +   +  +EM++
Sbjct: 471 YGRCGSRTYAFKMYDEMIS 489



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 108/264 (40%), Gaps = 7/264 (2%)

Query: 98  AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           AV FF     RG       +N ++ V GK G + +    ++ M++ G      T+  +  
Sbjct: 270 AVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAG 329

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVD 214
           +Y  AG ++EA    D M+  G+  +    N++++A      +   AL   +R+KK    
Sbjct: 330 TYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYA-NVGRVDEALALFDRMKKNGYV 388

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+ +++ ++     K+       +   EM  R    P  V  + T L    +    D   
Sbjct: 389 PNVNTYNLIFGMLGKKSRFTAMLEMLEEM-SRSGCTPNRV-TWNTMLAVCGKRGMEDYVT 446

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           + L  MK      +   ++  +    +    T+A +++D  M+  G  P   TYN +   
Sbjct: 447 RVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYD-EMISSGFTPCLTTYNALLNV 505

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQP 358
           L +       +    +M+KN ++P
Sbjct: 506 LSRQGDWSTAQSIVSKMLKNGFKP 529



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/327 (18%), Positives = 120/327 (36%), Gaps = 41/327 (12%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK--EDGVLSLPTFASIFD 155
           A+   RWA         A  ++V  LG+ G+ + + + +  M       L +  + ++  
Sbjct: 129 ALALLRWASDEGAADAAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLH 188

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
           +   AG+Y+ A+  F  +   GV   +V  N +L    R      R +  L  ++   V+
Sbjct: 189 ALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVE 248

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  + + ++    ++G +++A   F ++  R   +   V+ Y   L    +     EAL
Sbjct: 249 PDDFTASTVIAACGRDGLLDQAVAFFEDLKAR--GHVPCVVTYNALLQVFGKAGNYTEAL 306

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           + L+ M+   C P                                    D++TYN +   
Sbjct: 307 RVLKEMEDSGCQP------------------------------------DAVTYNELAGT 330

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
             +     E  K    M      P      T +T   +    + A+ +++ + +NG +P 
Sbjct: 331 YARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPN 390

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEM 421
             + N +   L    R + +    EEM
Sbjct: 391 VNTYNLIFGMLGKKSRFTAMLEMLEEM 417


>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
          Length = 802

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/419 (21%), Positives = 158/419 (37%), Gaps = 75/419 (17%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P  V  VL+ S D    A+ FF WA R  R    P  +  M++VL K    +     + +
Sbjct: 174 PSQVCAVLR-SQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVL 232

Query: 139 MKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           MK  G+   P  F+ +  SY  AG+  +A+    +M   GVE +++  N+ +    R  N
Sbjct: 233 MKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRA-N 291

Query: 198 QTSRALEFLNRVK------------------------------------KIVDPDGDSFA 221
           +  +AL FL R++                                    K   PD  S+ 
Sbjct: 292 RLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYY 351

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR--- 278
            ++    KE  + E      +M +     P+ V  Y T +  L +    DEAL FL+   
Sbjct: 352 TIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQV-TYNTLIHMLTKHDHADEALWFLKDAQ 410

Query: 279 -----------------------------VMKGENCFPTLKFFSNALDILVKLNDSTHAV 309
                                        ++   +C P +  ++  ++   +L +   A 
Sbjct: 411 EKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMDCPPDVVTYTAVVNGFCRLGEVDKAK 470

Query: 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369
           +L  +M   HG  P++++Y  +   + +  +  E  +  +   ++ W P  +  +  +  
Sbjct: 471 KLLQVMHT-HGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHG 529

Query: 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 428
           L    +   A ++   ++  G  P     N LL  L   GR  + R+F EE LN+   I
Sbjct: 530 LRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAI 588



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/470 (19%), Positives = 177/470 (37%), Gaps = 97/470 (20%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQR--LSP--YAWNLMVDVLGKNGRFEQ 131
           GI  TP+    V+ +SY       D  +     QR  + P     N  +DV  +  R E+
Sbjct: 237 GIYRTPEAFSRVM-VSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEK 295

Query: 132 MWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
               +  M+  G++ ++ T+  +   YC   + +EA+   + M   G   D V+  +++ 
Sbjct: 296 ALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMG 355

Query: 191 AICRQENQTSRALEFLNRVKKIVD-----PDGDSFAILLEGWEKEGNVEEA--------N 237
            +C+++    R +E  + +KK+       PD  ++  L+    K  + +EA         
Sbjct: 356 YLCKEK----RIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQE 411

Query: 238 KTF-----------------GEMVERFEW-----NPEHVLAYETFLITLIRGKQVDEALK 275
           K F                 G M E  +       P  V+ Y   +    R  +VD+A K
Sbjct: 412 KGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMDCPPDVVTYTAVVNGFCRLGEVDKAKK 471

Query: 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM-------------------- 315
            L+VM      P    ++  L+ + +   S  A ++ ++                     
Sbjct: 472 LLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLR 531

Query: 316 --------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                         MV  G FP  +  N++ + L ++ R HE  KF  E +        +
Sbjct: 532 REGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVV 591

Query: 362 NCATAITMLLDADEPEIAIEIWN--YILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
           N  T I      DE + A+ + +  Y++         +   L+  L   GR+++     +
Sbjct: 592 NFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTT--LVDTLGKKGRIAEATELMK 649

Query: 420 EMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFDSLER-----RCKT 460
           +ML++ I    + Y   +H+     Y +   + D+   LE+     +C+T
Sbjct: 650 KMLHKGIDPTPVTYRTVIHR-----YCQMGKVDDLVAILEKMISRQKCRT 694



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDV 172
           + +  +VD LGK GR  +    ++ M   G+   P T+ ++   YC  GK D+ V   + 
Sbjct: 626 FTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILE- 684

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLEGWEKEG 231
             M   ++     N ++  +C    +   A   L +V +     D  +   L+EG+ K+G
Sbjct: 685 -KMISRQKCRTIYNQVIEKLCVL-GKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKG 742

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
               A K    M  R    P+  +  +     +++GK VDEA K +
Sbjct: 743 VPLSAYKVACRMFNR-NLIPDVKMCEKLSKRLVLKGK-VDEADKLM 786


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 134/294 (45%), Gaps = 12/294 (4%)

Query: 139 MKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           MK  G++ ++ +++S+   +C AGK +E+   F+ M   GV+ ++V  N L+  +C++  
Sbjct: 189 MKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGK 248

Query: 198 ----QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253
                ++R L FL+   K  + +  S+ IL+ G+ K   VEEA   + EM +       +
Sbjct: 249 IGDLSSARKL-FLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQV--GKRPN 305

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313
           V  Y T L  L++  +V +A K   VMK          +   LD L K      A++L++
Sbjct: 306 VKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFN 365

Query: 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL-- 371
            +  ++    D  +Y+ + + L K  +V    +FF ++ +   QP  + C   I      
Sbjct: 366 ELKSYNFKL-DFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRV 424

Query: 372 -DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
              D+  I  E    + ENG  P   + N LL G     +L +V     +M  R
Sbjct: 425 EQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKMFKR 478



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 6/136 (4%)

Query: 116 WNLMVDVLGKNG-RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           + + +D L KNG  FE M     +   +  L   +++ + D  C AGK + A   F  +S
Sbjct: 344 YVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLS 403

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI----VDPDGDSFAILLEGWEKE 230
             G++ +VV  N ++   CR E Q  +A     +++K+      PD  ++  LL G+ + 
Sbjct: 404 QEGLQPNVVTCNIMIHGFCRVE-QVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCES 462

Query: 231 GNVEEANKTFGEMVER 246
             +EE      +M +R
Sbjct: 463 NKLEEVVNLLHKMFKR 478



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 4/160 (2%)

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           V +A  F  +M   +  P +  F+  L  L K+N  +    L++ M +  G  PD  T N
Sbjct: 71  VIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRL-AGLSPDLFTLN 129

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML---LDADEPEIAIEIWNYI 386
           ++  CL    RV E       +++  + P  +   T I  L         + A EI+  +
Sbjct: 130 ILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEM 189

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
              G++P   S + L+ G    G+L + +R   EM+++ +
Sbjct: 190 KAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGV 229


>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1147

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/430 (20%), Positives = 174/430 (40%), Gaps = 62/430 (14%)

Query: 35  PTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDS 94
           PT   F T LD+ + +     + +I       +IE +          ++ + +L   +  
Sbjct: 272 PTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFS----------EVTYNILINGFSK 321

Query: 95  PSSAVDFFRWAGRGQR----LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF 150
                +  R+ G  QR    ++PY++N +++   K G F++ W     M   G+    + 
Sbjct: 322 SGKMEEARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTST 381

Query: 151 ASIF-DSYCGAGKYDEA-----------VMSFDVMSMHG--------------------- 177
            +I+  + C  G+ D+A           V+S++ + MHG                     
Sbjct: 382 YNIYIRALCEFGRIDDARELLSSMAAPDVVSYNTL-MHGYIKMRKFVEASLLFDDLKAGN 440

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-----KIVDPDGDSFAILLEGWEKEGN 232
           +   +V  N+L+  +C   N     LE   R+K     +++ PD  ++  LL+G+ K GN
Sbjct: 441 INPSIVTYNTLIDGLCESGN-----LEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGN 495

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PTLKF 291
           +  A + + EM+ R    P+   AY T  +  +R    ++A +    M  E+   P L  
Sbjct: 496 LSMATEIYDEML-RKGIKPDGY-AYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAPDLTI 553

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +D L K+ +   A++    +    G  PD +TY  +    ++  R       + EM
Sbjct: 554 YNVRIDGLCKVGNLEKAIEFQRKIFRV-GLVPDHVTYTTVIRGYLEKGRFKMARDLYDEM 612

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           +     P+ +     I     A   E A +    + + G+ P   + N LL G+   G +
Sbjct: 613 LSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNI 672

Query: 412 SDVRRFAEEM 421
            +  R+  +M
Sbjct: 673 DEAYRYLCKM 682



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 113/274 (41%), Gaps = 29/274 (10%)

Query: 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAI 222
           ++A   ++ M MHG+   V+  N++L + C +     R  + +L   ++ ++    ++ I
Sbjct: 256 NKAQEVYETMVMHGIMPTVITFNTMLDS-CFKAGDLERVDKIWLEMKRRNIEFSEVTYNI 314

Query: 223 LLEGWEKEGNVEEANKTFGEM------VERFEWNPEHVLAYETFLITLIRG--KQ--VDE 272
           L+ G+ K G +EEA +  G+M      V  + +NP            LI G  KQ   DE
Sbjct: 315 LINGFSKSGKMEEARRFHGDMQRSGFPVTPYSFNP------------LIEGYCKQGLFDE 362

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332
           A      M     +PT   ++  +  L +      A +L   M     A PD ++YN + 
Sbjct: 363 AWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDARELLSSM-----AAPDVVSYNTLM 417

Query: 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
              IK ++  E    F ++      P+ +   T I  L ++   E A  +   +    I 
Sbjct: 418 HGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIY 477

Query: 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           P   +   LL G    G LS      +EML + I
Sbjct: 478 PDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGI 511



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 126/302 (41%), Gaps = 2/302 (0%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+ T+ ++ D  C +G  + A    + M+   +  DV+   +LL    +  N +     +
Sbjct: 444 SIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIY 503

Query: 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              ++K + PDG ++     G  + G+ E+A +   EMV      P+ +  Y   +  L 
Sbjct: 504 DEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAPD-LTIYNVRIDGLC 562

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
           +   +++A++F R +      P    ++  +   ++      A  L+D M+    + P  
Sbjct: 563 KVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDLYDEMLSKRLS-PSV 621

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385
           +TY ++     K  R+ +  ++  EM K   +P  +     +  +  A   + A      
Sbjct: 622 ITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCK 681

Query: 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           + E GI P + S   L+    +L +  +V +  +EML++ I     T   L K    +  
Sbjct: 682 MEEEGISPNKYSYTILISKHCDLDKWEEVVKLYKEMLDKEIEPDGYTHRALFKHLEKDHE 741

Query: 446 SM 447
           SM
Sbjct: 742 SM 743



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 169/406 (41%), Gaps = 38/406 (9%)

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQ--RLSPYAWNLMVDVLGKNGRFEQMWN 134
           ++  PDL+  VL +    P  A  FF W  R    + S  A+  M+++L +N   + M  
Sbjct: 117 LLTDPDLLIRVLNMIRVKPEIAFRFFNWIQRQSDVKQSRQAFAAMLEILAEN---DLMSE 173

Query: 135 AVRVMKEDGVLSLPTFASI-----FDS-------------YCGAGKYDEAVMSFDVMSMH 176
           A  V +    L +     +     FD              Y      ++ ++SF+ M   
Sbjct: 174 AYLVAERSINLGMHEIDDLLIDGNFDKLVALKLLDLLLWVYTKKSMAEKCLLSFEKMIRK 233

Query: 177 GVEQDVVAVNSLLSAICRQENQTSRALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           G    V   N +L  + R     ++A E +   V   + P   +F  +L+   K G++E 
Sbjct: 234 GFLPSVRNCNIVLRVL-RDSRMMNKAQEVYETMVMHGIMPTVITFNTMLDSCFKAGDLER 292

Query: 236 ANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF-FS 293
            +K + EM  R  E++    + Y   +    +  +++EA +F   M+  + FP   + F+
Sbjct: 293 VDKIWLEMKRRNIEFSE---VTYNILINGFSKSGKMEEARRFHGDMQ-RSGFPVTPYSFN 348

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             ++   K      A  + D M+   G +P + TYN+    L +  R+ +      E++ 
Sbjct: 349 PLIEGYCKQGLFDEAWGVTDEMLN-AGIYPTTSTYNIYIRALCEFGRIDDAR----ELLS 403

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           +   P  ++  T +   +   +   A  +++ +    I P   + N L+ GL   G L  
Sbjct: 404 SMAAPDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEG 463

Query: 414 VRRFAEEMLNRRILIYEVTMHKLKKAFY-NESRSM-RDIFDSLERR 457
            +R  EEM ++ I    +T   L K F  N + SM  +I+D + R+
Sbjct: 464 AQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRK 509


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 157/363 (43%), Gaps = 9/363 (2%)

Query: 67  DIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVL 123
           D+ S +   GI+P   +   ++     +     A++FF+   GRG     Y +N ++  L
Sbjct: 167 DMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGL 226

Query: 124 GKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
            + G ++++   + +M + G      TF  + D  C  GK  EA    ++M   G E D+
Sbjct: 227 SRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDI 286

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
           +  N+L++ +C           F +   + +  +  S+ IL+ G+ K+  ++EA + F E
Sbjct: 287 LTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEE 346

Query: 243 MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
           M  R +      + Y T +  L +  +V  A K    M+    F  L  +   LD L K 
Sbjct: 347 M--RPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKN 404

Query: 303 NDSTHAVQLWD-IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                A+ L+  I    H   P+   ++++ + + +  ++ E  K F E+ KN  +P  +
Sbjct: 405 GHLEEAIDLFQSIKKTEHK--PNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTI 462

Query: 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
                I  L +      A+++   + E G LP   + N ++  L     + +  +  EEM
Sbjct: 463 AYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEM 522

Query: 422 LNR 424
            NR
Sbjct: 523 RNR 525



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 125/273 (45%), Gaps = 8/273 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           +G+      +N +++ L   G+ E        + + G+ L++ ++  + + YC   K DE
Sbjct: 280 KGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDE 339

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   F+ M   G++   V  N+L+ A+C+     +    F+            ++ +LL+
Sbjct: 340 AFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLD 399

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G  K G++EEA   F + +++ E  P ++  +   L  + R  +++EA K    +     
Sbjct: 400 GLCKNGHLEEAIDLF-QSIKKTEHKP-NIEVFSILLDGMCRAGKLEEAWKQFDEISKNGL 457

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQL-WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
            P    ++  ++ L      + AV+L W   M   G  PDS+T+N+I + L+K   +HE 
Sbjct: 458 EPDTIAYNILINGLCNKGMLSEAVKLLWQ--MEEKGCLPDSITFNVIIQNLLKENEIHEA 515

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
            +   EM    + P      T++ + L + +P+
Sbjct: 516 IQLLEEMRNRNFSPD--EAVTSMLLCLASFDPQ 546



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 138/366 (37%), Gaps = 73/366 (19%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  I DS C  G   EA+  F  M   G+  DVV  +SL+  +CR   +   ALEF   
Sbjct: 148 TYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRF-GRLKEALEFFKE 206

Query: 209 ------------------------------------VKKIVDPDGDSFAILLEGWEKEGN 232
                                               V +   PD  +F IL++G  KEG 
Sbjct: 207 MEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGK 266

Query: 233 VEEANKTFGEMVERFEWNPE----------------------------------HVLAYE 258
           V EA +   E++      P+                                  +V +Y 
Sbjct: 267 VGEAQQIL-ELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYN 325

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
             +    + +++DEA +    M+ +   P+   ++  +  L +      A +L+ + M  
Sbjct: 326 ILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLF-VEMQT 384

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            G F    TY ++ + L KN  + E    F  + K E +P     +  +  +  A + E 
Sbjct: 385 CGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEE 444

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
           A + ++ I +NG+ P   + N L+ GL N G LS+  +   +M  +  L   +T + + +
Sbjct: 445 AWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQ 504

Query: 439 AFYNES 444
               E+
Sbjct: 505 NLLKEN 510



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 124/281 (44%), Gaps = 4/281 (1%)

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           +AV  FD M+  G+  D      L++ +C+   +T  A++   ++K     D  ++ +++
Sbjct: 95  DAVQLFDEMTEKGLFGDAKTYGILINGLCKAR-KTGLAIKLHEKMKGNCKGDVFTYGMII 153

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +   K+G   EA   F EM+      P+ V+ Y + +  L R  ++ EAL+F + M+G  
Sbjct: 154 DSLCKDGMTTEALDMFSEMIGAGIL-PD-VVVYSSLMDGLCRFGRLKEALEFFKEMEGRG 211

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
               +  +++ +  L +           + +MV  G  PD+ T+ ++ + L K  +V E 
Sbjct: 212 ISADVYTYNSLIHGLSRAGLWKEVTWFLN-LMVDRGFSPDAFTFTILIDGLCKEGKVGEA 270

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
           ++    M     +P  L   T +  L    + E A +++  + + GI     S N L+ G
Sbjct: 271 QQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILING 330

Query: 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
                ++ +  R  EEM  + +    VT + L  A     R
Sbjct: 331 YCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGR 371


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 143/327 (43%), Gaps = 8/327 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           ++N++++ L + G+  +  + +  M+  G +  + ++ +I D YC  G+  + V     M
Sbjct: 112 SYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEM 171

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
            + G++ ++   +S++  +C+              +K+ V PD   +  L++G+ K GN 
Sbjct: 172 QLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNT 231

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           + A K F EM  R E  P+ + A+   +  L    +V EA K    M  +   P    ++
Sbjct: 232 QAAYKLFSEMEAR-EIVPDSI-AFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYT 289

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D   KL +   A  L +  MV  G  P+ +TY  + + L K+  +    +  HEM +
Sbjct: 290 ALIDGYCKLGEMKKAFFLHN-QMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCR 348

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
              Q       T +  L  A     A+++   + E G+ P   +   L+      G +  
Sbjct: 349 KGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVK 408

Query: 414 VRRFAEEMLNR----RILIYEVTMHKL 436
            R    EML+R     ++ + V M+ L
Sbjct: 409 ARELLREMLDRGLQPTVVTFNVLMNGL 435



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 139/309 (44%), Gaps = 6/309 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G + + Y ++ ++ +L K+G+  +    +R M + GV      + ++ D +C  G    
Sbjct: 174 KGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQA 233

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A   F  M    +  D +A ++L+  +            F   +KK  +PD  ++  L++
Sbjct: 234 AYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALID 293

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ K G +++A     +MV+     P +V+ Y      L +  ++D A + L  M  +  
Sbjct: 294 GYCKLGEMKKAFFLHNQMVQ-IGLTP-NVVTYTALADGLCKSGELDTANELLHEMCRKGL 351

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
              +  ++  ++ L K  +   AV+L + M    G  PD++TY  + +   K   + +  
Sbjct: 352 QLNISTYNTIVNGLCKAGNILQAVKLMEEMKE-AGLHPDTITYTTLMDAYYKTGEMVKAR 410

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL--V 403
           +   EM+    QPT +     +  L  + + E    +  ++LE GI+P  A+ N ++   
Sbjct: 411 ELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQY 470

Query: 404 GLRNLGRLS 412
            +RN  R+S
Sbjct: 471 CIRNNMRIS 479



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 136/311 (43%), Gaps = 9/311 (2%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F+++     G+GK  EA   F+ M   G E D V   +L+   C+   +  +A    N++
Sbjct: 253 FSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKL-GEMKKAFFLHNQM 311

Query: 210 KKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRG 267
            +I + P+  ++  L +G  K G ++ AN+   EM  +  + N   +  Y T +  L + 
Sbjct: 312 VQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLN---ISTYNTIVNGLCKA 368

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
             + +A+K +  MK     P    ++  +D   K  +   A +L   M+   G  P  +T
Sbjct: 369 GNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLD-RGLQPTVVT 427

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           +N++   L  + ++ + E+    M++    P      + +      +   I+ EI+  + 
Sbjct: 428 FNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMC 487

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
             G++P   + N L+ G      + +     +EM+ +R  +   + + L K F+   + +
Sbjct: 488 AQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLL 547

Query: 448 --RDIFDSLER 456
             R +F+ + R
Sbjct: 548 EARQLFEEMRR 558



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 52/252 (20%), Positives = 105/252 (41%), Gaps = 23/252 (9%)

Query: 82  DLVHEV----LQLSYDSPSSAVDFFRWAGR--------------GQRLSPYAWNLMVDVL 123
           +L+HE+    LQL+  + ++ V+    AG               G       +  ++D  
Sbjct: 341 ELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAY 400

Query: 124 GKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
            K G   +    +R M + G+  ++ TF  + +  C +GK ++       M   G+  + 
Sbjct: 401 YKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNA 460

Query: 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
              NS++   C + N       +     + V PD +++ IL++G  K  N++EA     E
Sbjct: 461 ATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKE 520

Query: 243 MVE-RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301
           MVE RF        +Y   +    + K++ EA +    M+ E    + + ++  +D+  +
Sbjct: 521 MVEKRFNLTAS---SYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYE 577

Query: 302 LNDSTHAVQLWD 313
             +    ++L D
Sbjct: 578 EGNMETTLELCD 589


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 149/345 (43%), Gaps = 12/345 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +  +++ L K G F Q       M   G    + T+ +I +  C  G+   A      M 
Sbjct: 166 FTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKME 225

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G + ++V  ++L+ ++CR +   + AL+  + +K K + PD  ++  L++G  K    
Sbjct: 226 EAGCQPNMVTYSTLIDSLCR-DRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRW 284

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           +EA+    EM       P+ ++ +   + T  +  +V EAL  L+ M      P +  +S
Sbjct: 285 KEASALLNEMTS-LNIMPD-IVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYS 342

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
           + +       D   A +L+ +M+   G  P+  +YN++     K KR+ E  + F+EMI 
Sbjct: 343 SLMYGYSLWTDVVEARKLFHVMIT-KGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIH 401

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
               P  ++  T I       +   A +++  +  NG LP   + + LL G    G L  
Sbjct: 402 QGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGK 461

Query: 414 VRRFAEEM----LNRRILIYEVTMHKLKKAFYNESRSMRDIFDSL 454
             R    M    L   +++Y + +H + K+     +  R +F  L
Sbjct: 462 AFRLFRAMQSTYLKPNLVMYTILVHAMCKS--GNHKDARKLFSEL 504



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 143/337 (42%), Gaps = 23/337 (6%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A+D F +  + + +SP  + +  ++  L K  R+++    +  M    ++  + TF  + 
Sbjct: 252 ALDIFSYM-KAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLV 310

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
           D++C  GK  EA+     M+  GVE +VV  +SL+       +       F   + K   
Sbjct: 311 DTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCK 370

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+  S+ IL+ G+ K   ++EA + F EM+ +    P +V +Y T +    +  ++ EA 
Sbjct: 371 PNIFSYNILINGYCKAKRIDEAMQLFNEMIHQ-GLTPNNV-SYNTLIHGFCQLGKLREAQ 428

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
              R M      P L  +S  LD   K      A +L+  M   +   P+ + Y ++   
Sbjct: 429 DLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLK-PNLVMYTILVHA 487

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           + K+    +  K F E+     QP      T I  L      + A+E +  +  +G  P 
Sbjct: 488 MCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPD 547

Query: 395 EASANELLVGL----------------RNLGRLSDVR 415
           E S N ++ GL                R+ G ++DVR
Sbjct: 548 EISYNVIIRGLLQHKDESRALLLVGEMRDRGFIADVR 584



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/355 (20%), Positives = 143/355 (40%), Gaps = 40/355 (11%)

Query: 96  SSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASI 153
           + AV+ F     +G +   Y +N +++ L K G        ++ M+E G   ++ T++++
Sbjct: 180 AQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTL 239

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI- 212
            DS C     +EA+  F  M   G+  D+    SL+  +C+  ++   A   LN +  + 
Sbjct: 240 IDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCK-FSRWKEASALLNEMTSLN 298

Query: 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272
           + PD  +F +L++ + KEG V EA      M E     P +V+ Y + +        V E
Sbjct: 299 IMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTE-MGVEP-NVVTYSSLMYGYSLWTDVVE 356

Query: 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM----------------- 315
           A K   VM  + C P +  ++  ++   K      A+QL++ M                 
Sbjct: 357 ARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIH 416

Query: 316 -----------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358
                            M  +G  PD  TY+++ +   K   + +  + F  M     +P
Sbjct: 417 GFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKP 476

Query: 359 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
             +     +  +  +   + A ++++ +   G+ P       ++ GL   G L +
Sbjct: 477 NLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDE 531



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 125/312 (40%), Gaps = 46/312 (14%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSM---HGVEQDVVAVNSLLSAICRQENQTSRALE- 204
           T +   + +C   + D   + F V++     G++  +V   +L++ +C+   + ++A+E 
Sbjct: 130 TLSIFMNCFCQLQRVD---LGFSVLAKVIKLGLQPTIVTFTTLINGLCK-VGEFAQAVEL 185

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           F + V K   PD  ++  ++ G  K G    A     +M E     P  V  Y T + +L
Sbjct: 186 FDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKM-EEAGCQPNMV-TYSTLIDSL 243

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            R + V+EAL     MK +   P +  +++ +  L K +    A  L + M   +   PD
Sbjct: 244 CRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLN-IMPD 302

Query: 325 SLTYNMIFECLIKNKRVH-----------------------------------EVEKFFH 349
            +T+N++ +   K  +V                                    E  K FH
Sbjct: 303 IVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFH 362

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
            MI    +P   +    I     A   + A++++N ++  G+ P   S N L+ G   LG
Sbjct: 363 VMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLG 422

Query: 410 RLSDVRRFAEEM 421
           +L + +     M
Sbjct: 423 KLREAQDLFRNM 434



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 92/226 (40%), Gaps = 2/226 (0%)

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           FA LL    K G   +   +  + +E    +P ++     F+    + ++VD     L  
Sbjct: 95  FAKLLSAIVKMGQYYDVVISLSKQMELVGLSP-NIYTLSIFMNCFCQLQRVDLGFSVLAK 153

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           +      PT+  F+  ++ L K+ +   AV+L+D M V  G  PD  TYN I   L K  
Sbjct: 154 VIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDM-VAKGCQPDVYTYNTIINGLCKIG 212

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
                     +M +   QP  +  +T I  L        A++I++Y+   GI P   +  
Sbjct: 213 ETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYT 272

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            L+ GL    R  +      EM +  I+   VT + L   F  E +
Sbjct: 273 SLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGK 318



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 63/154 (40%)

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           + +D+AL     M      P +  F+  L  +VK+      V      M   G  P+  T
Sbjct: 71  RNIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYT 130

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
            ++   C  + +RV        ++IK   QPT +   T I  L    E   A+E+++ ++
Sbjct: 131 LSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMV 190

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
             G  P   + N ++ GL  +G  +      ++M
Sbjct: 191 AKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKM 224



 Score = 41.6 bits (96), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 6/167 (3%)

Query: 83  LVHEVLQLSYDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           L+H   QL       A D FR     G     + +++++D   K G   + +   R M+ 
Sbjct: 414 LIHGFCQLG--KLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQS 471

Query: 142 DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
             +  +L  +  +  + C +G + +A   F  + + G++  V    ++++ +C+ E    
Sbjct: 472 TYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCK-EGLLD 530

Query: 201 RALE-FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
            ALE F N       PD  S+ +++ G  +  +   A    GEM +R
Sbjct: 531 EALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDR 577


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/308 (19%), Positives = 138/308 (44%), Gaps = 4/308 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
           RG +     +  +V+ L K G  +   + ++ M++  +   +  + +I D  C     D+
Sbjct: 217 RGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDD 276

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  F  M   G+  DV   +SL+S +C     +  +    + +++ ++P+  +F+ L++
Sbjct: 277 ALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALID 336

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            + KEG + EA K + EM++R   +P+ +  Y + +       ++DEA     +M  ++C
Sbjct: 337 AFVKEGKLVEAEKLYDEMIKR-SIDPD-IFTYSSLINGFCMHDRLDEAKHMFELMISKDC 394

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
           FP +  +S  +    K       ++L+   M   G   +++TY  +     + +     +
Sbjct: 395 FPNVVTYSTLIKGFCKAKRVEEGMELFR-EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 453

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
             F +M+     P  L     +  L    +   A+ ++ Y+  + + P   + N ++ G+
Sbjct: 454 MVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGM 513

Query: 406 RNLGRLSD 413
              G++ D
Sbjct: 514 CKAGKVED 521



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 153/354 (43%), Gaps = 13/354 (3%)

Query: 98  AVDFFRWAGRGQRLSPY----AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFAS 152
           AVD F   G   +  P+     +N ++  + K  +FE + +    M+  G+   L T++ 
Sbjct: 67  AVDLF---GDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
             + +C   +   A+     M   G E D+V ++SLL+  C  + + S A+  ++++ ++
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSK-RISDAVALVDQMVEM 182

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
              PD  +F  L+ G        EA     +MV+R    P+ ++ Y T +  L +   +D
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQR-GCQPD-LVTYGTVVNGLCKRGDID 240

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
            AL  L+ M+       +  ++  +D L K      A+ L+   M   G  PD  TY+ +
Sbjct: 241 LALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLF-TEMDNKGIRPDVFTYSSL 299

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
             CL    R  +  +   +MI+ +  P  +  +  I   +   +   A ++++ +++  I
Sbjct: 300 ISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 359

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
            P   + + L+ G     RL + +   E M+++      VT   L K F    R
Sbjct: 360 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKR 413



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 127/303 (41%), Gaps = 4/303 (1%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F     +G R   + ++ ++  L   GR+      +  M E  +  ++ TF+++ D++  
Sbjct: 281 FTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 340

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            GK  EA   +D M    ++ D+   +SL++  C  +        F   + K   P+  +
Sbjct: 341 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 400

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           ++ L++G+ K   VEE  + F EM +R      + + Y T +    + +  D A    + 
Sbjct: 401 YSTLIKGFCKAKRVEEGMELFREMSQRGLVG--NTVTYTTLIHGFFQARDCDNAQMVFKQ 458

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           M      P +  ++  LD L K      A+ +++ +       PD  TYN++ E + K  
Sbjct: 459 MVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQR-STMEPDIYTYNIMIEGMCKAG 517

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           +V +  + F  +      P  +   T I+        E A  +   + E+G LP   + N
Sbjct: 518 KVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYN 577

Query: 400 ELL 402
            L+
Sbjct: 578 TLI 580



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 123/316 (38%), Gaps = 44/316 (13%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F  +  +     K++  +   + M   G+  D+   +  ++  CR+ +Q S AL  
Sbjct: 82  SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRR-SQLSLALAV 140

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L ++ K+  +PD  + + LL G+     + +A     +MVE   + P+    + T +  L
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE-MGYKPD-TFTFTTLIHGL 198

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF-P 323
               +  EA+  +  M    C P L  +   ++ L K  D   A+ L   M    G    
Sbjct: 199 FLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKME--KGKIEA 256

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D + YN I + L K K + +    F EM                      D   I  +++
Sbjct: 257 DVVIYNTIIDGLCKYKHMDDALNLFTEM----------------------DNKGIRPDVF 294

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
            Y             + L+  L N GR SD  R   +M+ R+I    VT   L  AF  E
Sbjct: 295 TY-------------SSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 341

Query: 444 SR--SMRDIFDSLERR 457
            +      ++D + +R
Sbjct: 342 GKLVEAEKLYDEMIKR 357


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 135/300 (45%), Gaps = 6/300 (2%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           R+  +G +     +  ++  L   G+  +  +    M +DG+L ++ ++  + D +C   
Sbjct: 417 RFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTS 476

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSF 220
             D+A  +F  M   G+  ++V  N+L+   C+  E   SR L  +  ++    PD  +F
Sbjct: 477 MMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDL-LVMLLEHGFKPDIFTF 535

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280
           + +++G  +   +E+A   F EMV  +  +P  V  Y   + +L     V  ++K LR M
Sbjct: 536 SSIIDGLCRAKQIEDALGCFSEMV-MWGLSPNAV-TYNILIHSLCIIGDVPRSMKLLRKM 593

Query: 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
           + +   P +  F+  +    ++     A +L+  M+   G  PD+ TY    +   ++ R
Sbjct: 594 QTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSL-GLIPDNYTYVAFIKVFCQSGR 652

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
            +E ++ F  M  N   P    C   +  L+  D+ E A +I     E GIL   A+ +E
Sbjct: 653 FNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGILVNFAAISE 712



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/327 (18%), Positives = 132/327 (40%), Gaps = 4/327 (1%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAG 161
           ++   G +     +N+ ++ L K     ++ N +    E G+     T+ ++  +   AG
Sbjct: 382 KFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAG 441

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
           K  E    F+ M   G+  +V + N ++   C+          F     K + P+  +F 
Sbjct: 442 KVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFN 501

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            L++G+ K G + ++      ++E   + P+ +  + + +  L R KQ+++AL     M 
Sbjct: 502 TLIDGYCKGGEICKSRDLLVMLLEH-GFKPD-IFTFSSIIDGLCRAKQIEDALGCFSEMV 559

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
                P    ++  +  L  + D   +++L   M    G  PD  ++N + +   +  +V
Sbjct: 560 MWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQT-DGINPDVFSFNALIQSFCRMGKV 618

Query: 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANEL 401
            + +K F  M+     P        I +   +     A E++  +  NG +P   + N +
Sbjct: 619 EDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSMEANGCMPDSFTCNII 678

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILI 428
           L  L    +    ++ A+      IL+
Sbjct: 679 LDALVKQDQFEAAQKIAKTCSEWGILV 705



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 92/468 (19%), Positives = 184/468 (39%), Gaps = 83/468 (17%)

Query: 66  DDIESALACTGIIPTPDLVHEVLQLSYDSPS---SAVDFFRWAGRGQRLSPYAWNLMVDV 122
           D+I   ++  GI P+  L + V+     S S   + + F + +    +   + +N+++  
Sbjct: 202 DEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHG 261

Query: 123 LGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS------- 174
           + ++G  ++    V+ M+  G   ++ T+  + D +  A K DEA    + M        
Sbjct: 262 VCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVLETMKARKVSPS 321

Query: 175 -------MHGVEQDV---------------------VAVNSLLSAICRQENQTSRALEFL 206
                  +HGV + V                     +A ++LL  +   +N    A   L
Sbjct: 322 EATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCL-SSKNMAREAGALL 380

Query: 207 NRVKKIV-DPDGDSFAI----LLEGWE-------------------------------KE 230
            +  KI   PD  +F I    L++G++                                 
Sbjct: 381 KKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMA 440

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G V E N  F +MV+  +    +V +Y   +    +   +D+A    + M+ +   P L 
Sbjct: 441 GKVTEGNHYFNQMVK--DGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLV 498

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            F+  +D   K  +   +  L  +M++ HG  PD  T++ I + L + K++ +    F E
Sbjct: 499 TFNTLIDGYCKGGEICKSRDLL-VMLLEHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSE 557

Query: 351 MIKNEWQPTPLNCATAI-TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           M+     P  +     I ++ +  D P  ++++   +  +GI P   S N L+     +G
Sbjct: 558 MVMWGLSPNAVTYNILIHSLCIIGDVPR-SMKLLRKMQTDGINPDVFSFNALIQSFCRMG 616

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLE 455
           ++ D ++    ML+  ++    T     K F    R    +++F S+E
Sbjct: 617 KVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSME 664



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 108/278 (38%), Gaps = 38/278 (13%)

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218
           G  KY + +  F  +S  G+       N+++ A+ +  +     L+F         PD  
Sbjct: 196 GLAKYCDEI--FGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRF 253

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ IL+ G  + G V+EA +   +M E   ++P +V  Y   +      K+VDEA + L 
Sbjct: 254 TYNILIHGVCRSGVVDEALRLVKQM-EGLGYSP-NVFTYTILIDGFFNAKKVDEAFRVLE 311

Query: 279 VMKGENCFP---TLKFFSNAL-----------------------------DILVKLNDST 306
            MK     P   T++ F + +                              +L  L+   
Sbjct: 312 TMKARKVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSKN 371

Query: 307 HAVQLWDIMMVFH--GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
            A +   ++  F   G  PDS T+N+   CLIK   ++EV       ++   +       
Sbjct: 372 MAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYL 431

Query: 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
             I  L  A +       +N ++++G+L    S N ++
Sbjct: 432 ALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVI 469


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 128/300 (42%), Gaps = 6/300 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +  ++  L   GR       +  M + G   S+ T+  + ++ C +  + EA+   D 
Sbjct: 142 YTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDE 201

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEG 231
           M   G   ++V  N +++ +CR E +   A E LNR+      PD  S+  +L+G     
Sbjct: 202 MRAKGCTPNIVTYNVIINGMCR-EGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAAR 260

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
             ++    F EMV++ +  P  V  ++  +    RG  V+ A++ L+ M    C P    
Sbjct: 261 RWDDVKVLFAEMVDK-KCVPNEV-TFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTL 318

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
            +  ++ + K      A    + M ++ G  PD+++Y  +   L +  R    ++   EM
Sbjct: 319 CNIVINAICKQGRVDDAYDFLNNMGMY-GCNPDTISYTTVLRGLCRAGRWEHAKELLPEM 377

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           ++    P  +   T I +L      E AI++   + E G      + N L+ G    GR+
Sbjct: 378 VRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRV 437



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 109/244 (44%), Gaps = 7/244 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N  + +L + G  EQ    + +M E G  + + T+ ++   +C  G+ D A+  F+ + 
Sbjct: 389 FNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP 448

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
               E + +   +LL+ +C  E   + A      ++K    +  +F +L+  + ++G VE
Sbjct: 449 ---CEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVE 505

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA +   +M+E       +++ + T L  + +    +EAL+ L  +  +        +S+
Sbjct: 506 EAMELVNQMME--HGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSS 563

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +D+L + + +  A+Q+   +    G  P    YN I   L K     +   FF  M+ N
Sbjct: 564 VVDVLSREDRTEEAIQMLHAVQDM-GMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSN 622

Query: 355 EWQP 358
              P
Sbjct: 623 GCMP 626



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/332 (20%), Positives = 136/332 (40%), Gaps = 41/332 (12%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG + S   + ++++ + K+  F +  N +  M+  G   ++ T+  I +  C  G+ D+
Sbjct: 170 RGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDD 229

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A    + +S +G + D+V+  ++L  +C         + F   V K   P+  +F +L+ 
Sbjct: 230 AKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVR 289

Query: 226 GWEKEGNVEEANKTFGEMVER----------------------------------FEWNP 251
            + + G VE A +   +M +                                   +  NP
Sbjct: 290 FFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNP 349

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + + +Y T L  L R  + + A + L  M  +NC P    F+  + IL +      A++L
Sbjct: 350 DTI-SYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKL 408

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
            ++M  + G     +TYN +        RV    + F+ +     +P  +   T +T L 
Sbjct: 409 IELMPEY-GCSVGIVTYNALVHGFCVQGRVDSALELFNNL---PCEPNTITYTTLLTGLC 464

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLV 403
            A+  + A E+   +++    PL A    +LV
Sbjct: 465 HAERLDAAAELLAGMIQKDC-PLNAVTFNVLV 495



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/322 (19%), Positives = 133/322 (41%), Gaps = 34/322 (10%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASI-FDSYCGAGKYDEAVMSFDVMS 174
           ++++V    + G  E+    ++ M + G     T  +I  ++ C  G+ D+A    + M 
Sbjct: 284 FDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMG 343

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGWEKEGNV 233
           M+G   D ++  ++L  +CR   +   A E L   V+K   P+  +F   +    ++G +
Sbjct: 344 MYGCNPDTISYTTVLRGLCRA-GRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLI 402

Query: 234 EEANK---------------TFGEMVERFEWNPE---------------HVLAYETFLIT 263
           E+A K               T+  +V  F                    + + Y T L  
Sbjct: 403 EQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTLLTG 462

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L   +++D A + L  M  ++C      F+  +    +      A++L + MM  HG  P
Sbjct: 463 LCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMME-HGCTP 521

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           + +T+N + + + K+    E  +  H ++        +  ++ + +L   D  E AI++ 
Sbjct: 522 NLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQML 581

Query: 384 NYILENGILPLEASANELLVGL 405
           + + + G+ P     N++L  L
Sbjct: 582 HAVQDMGMRPKVGMYNKILFAL 603



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 115/286 (40%), Gaps = 10/286 (3%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217
           C  G+  +A          G   DV A N+L++  CR   +   A   +  +   V PD 
Sbjct: 85  CRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRY-GRLDAARRLIASMP--VPPDA 141

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++  ++ G    G V +A     +M++R    P  V+ Y   L  + +     EA+  L
Sbjct: 142 YTYTPIIRGLCDRGRVGDALALLDDMLQR-GCQPS-VVTYTVLLEAVCKSSGFGEAMNVL 199

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M+ + C P +  ++  ++ + +      A ++ +  +  +G  PD ++Y  + + L  
Sbjct: 200 DEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILN-RLSSYGFQPDIVSYTTVLKGLCA 258

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
            +R  +V+  F EM+  +  P  +     +         E AI++   + ++G  P    
Sbjct: 259 ARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTL 318

Query: 398 ANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMHKLKKA 439
            N ++  +   GR+ D   F   M     N   + Y   +  L +A
Sbjct: 319 CNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRA 364



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/347 (20%), Positives = 132/347 (38%), Gaps = 55/347 (15%)

Query: 96  SSAVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP------ 148
           S A    R A   G  +  +A+N +V    + GR +    A R +    + S+P      
Sbjct: 91  SDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLD----AARRL----IASMPVPPDAY 142

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+  I    C  G+  +A+   D M   G +  VV    LL A+C+       A+  L+ 
Sbjct: 143 TYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSG-FGEAMNVLDE 201

Query: 209 VK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++ K   P+  ++ +++ G  +EG V++A +    +   + + P+ +++Y T L  L   
Sbjct: 202 MRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRL-SSYGFQPD-IVSYTTVLKGLCAA 259

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
           ++ D+    ++V+  E                                MV     P+ +T
Sbjct: 260 RRWDD----VKVLFAE--------------------------------MVDKKCVPNEVT 283

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           ++M+     +   V    +   +M ++   P    C   I  +      + A +  N + 
Sbjct: 284 FDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMG 343

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
             G  P   S   +L GL   GR    +    EM+ +     EVT +
Sbjct: 344 MYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFN 390



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 73/190 (38%), Gaps = 4/190 (2%)

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P  V AY T +    R  ++D A + +  M      P    ++  +  L        A+ 
Sbjct: 106 PVDVFAYNTLVAGYCRYGRLDAARRLIASMPVP---PDAYTYTPIIRGLCDRGRVGDALA 162

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           L D M+   G  P  +TY ++ E + K+    E      EM      P  +     I  +
Sbjct: 163 LLDDMLQ-RGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGM 221

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430
                 + A EI N +   G  P   S   +L GL    R  DV+    EM++++ +  E
Sbjct: 222 CREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNE 281

Query: 431 VTMHKLKKAF 440
           VT   L + F
Sbjct: 282 VTFDMLVRFF 291


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 159/354 (44%), Gaps = 17/354 (4%)

Query: 78  IPTPDLVHEVLQLSYDSP--SSAVD-FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           + TP  + EV+++  ++   S A+  F++   R  + +  A+N M+ +L   G++ ++  
Sbjct: 156 VVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHE 215

Query: 135 AVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
               M  +G    P   T++++  ++C  G+ D A    + M  +G+ Q    + ++L  
Sbjct: 216 LYNEMSTEG-HCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGM-QPTTKIYTMLIT 273

Query: 192 ICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
           +  + +    AL     ++ +   PD  ++  L+ G  K G ++EA   F EM +R    
Sbjct: 274 LFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEM-QREGCR 332

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P+ V+     +  L +  ++D+A+K  + M    C P++  ++  +  L +       V 
Sbjct: 333 PDTVVM-NNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVP 391

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
            W   M   G  P S TY+++ +   K  R+ +      EM +  + P P    + I  L
Sbjct: 392 SWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDAL 451

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL---GRLSDVRRFAEEM 421
             A   ++A E++  + EN      +SA    V +++L   GRL D     +EM
Sbjct: 452 GKAKRYDLACELFQELKEN---CGSSSARVYAVMIKHLGKAGRLDDAINMFDEM 502



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 162/372 (43%), Gaps = 12/372 (3%)

Query: 57  CEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY--DSPSSAVDFFRWAGRGQRLSP- 113
           C++    S+  + + +   G+ PT  +   ++ L +  D    A+  F    R Q   P 
Sbjct: 241 CKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEM-RHQYCRPD 299

Query: 114 -YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKYDEAVMSFD 171
            + +  ++  LGK GR ++ ++    M+ +G        +   ++ G AG+ D+A+  F 
Sbjct: 300 VFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQ 359

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKE 230
            M        VV  N+++ A+   +++ S    +  R+K+  + P   +++IL++G+ K 
Sbjct: 360 EMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKT 419

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-L 289
             +E+A     EM E+    P    AY + +  L + K+ D A +  + +K ENC  +  
Sbjct: 420 NRMEKAMMLLEEMDEK--GFPPCPAAYCSLIDALGKAKRYDLACELFQELK-ENCGSSSA 476

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
           + ++  +  L K      A+ ++D M    G  PD   YN +   L +   + E      
Sbjct: 477 RVYAVMIKHLGKAGRLDDAINMFDEMNKL-GCAPDVYAYNALMSGLARTGMLDEALSTMR 535

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
            M ++   P   +    +  L     P  A+E+ + + ++ + P   S N +L  L + G
Sbjct: 536 RMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAG 595

Query: 410 RLSDVRRFAEEM 421
              +  +  EEM
Sbjct: 596 MFEEAAKLMEEM 607



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 5/193 (2%)

Query: 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKED-GVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
           P A+  ++D LGK  R++      + +KE+ G  S   +A +      AG+ D+A+  FD
Sbjct: 441 PAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFD 500

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKE 230
            M+  G   DV A N+L+S + R       AL  + R+++    PD +S+ I+L G  K 
Sbjct: 501 EMNKLGCAPDVYAYNALMSGLART-GMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKT 559

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           G    A +    M ++    P+ V++Y T L  L      +EA K +  M        L 
Sbjct: 560 GGPHRAMEMLSNM-KQSTVRPD-VVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLI 617

Query: 291 FFSNALDILVKLN 303
            +S+ L+ + K++
Sbjct: 618 TYSSILEAIGKVD 630



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 8/194 (4%)

Query: 235 EANKTFGEM---VERFEWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFP 287
           E  + +GEM   ++    NP  V+   T L  ++R     K V +A+     +K   C P
Sbjct: 134 EVVEQYGEMWKMIQEMVRNPICVVT-PTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQP 192

Query: 288 TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347
           T + +++ + +L+         +L++ M      FPD++TY+ +     K  R     + 
Sbjct: 193 TAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQL 252

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407
            +EM +N  QPT       IT+    D+   A+ ++  +      P   +  EL+ GL  
Sbjct: 253 LNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGK 312

Query: 408 LGRLSDVRRFAEEM 421
            GR+ +   F  EM
Sbjct: 313 AGRIDEAYHFFYEM 326



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 75/192 (39%), Gaps = 3/192 (1%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           AY + +I L+   Q  +  +    M  E +CFP    +S  +    KL     A QL + 
Sbjct: 196 AYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNE 255

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
           M   +G  P +  Y M+     K   VH     F EM     +P        I  L  A 
Sbjct: 256 MKE-NGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAG 314

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
             + A   +  +   G  P     N ++  L   GRL D  +  +EM   R +   VT +
Sbjct: 315 RIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYN 374

Query: 435 KLKKAFYNESRS 446
            + KA + ES+S
Sbjct: 375 TIIKALF-ESKS 385


>gi|255660930|gb|ACU25634.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 484

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 134/288 (46%), Gaps = 9/288 (3%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQM 132
           ++P+ D  LV+ VL  + ++   A+ FFRW  R   L  +      ++++LG+  +    
Sbjct: 6   LVPSFDHELVYNVLHGAKNA-EHALQFFRWVERSNLLEHNREIHLKIIEILGRASKLNHA 64

Query: 133 WNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191
              +  M + G+      +  + DSY  AG   E+V  F  M   GVE+ + + ++L   
Sbjct: 65  RCILLDMPKKGLEWDEDMWVMMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKV 124

Query: 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251
           I R+         F   V + ++P   +F +L+ G+   G VE AN+ F +M  R E  P
Sbjct: 125 ISRRGRYMMSKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDMKSR-EITP 183

Query: 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311
           + V+ Y T +    R K+++EA K+   MK     PT+  ++  +     ++    A++L
Sbjct: 184 D-VITYNTMINGYNRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGYASVDRVDDALRL 242

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
            + M    G  P+++TY+ +   L   +++ E      EM+     PT
Sbjct: 243 VEEMKGL-GIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYVAPT 289



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 11/226 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK ++ D D + ++++ + K G V+E+ K F +M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLEWDEDMWVMMIDSYGKAGIVQESVKLFQKMEELGVER------TIKSYDAL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              + R  +   + ++   M  E   PT   F N L     L+        +   M    
Sbjct: 122 FKVISRRGRYMMSKRYFNKMVNEGIEPTRHTF-NVLIWGFFLSGKVETANRFFEDMKSRE 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM + +  PT +   T I      D  + A+
Sbjct: 181 ITPDVITYNTMINGYNRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGYASVDRVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            +   +   GI P   + + LL GL N  ++S+ R   +EM+++ +
Sbjct: 241 RLVEEMKGLGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYV 286



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 23/181 (12%)

Query: 135 AVRVMKEDGVLSLPT----FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV------- 183
           A  V+K    LS+PT    +  + + YC AG+YD+AV   D +    +E+D++       
Sbjct: 310 AADVLKAMIRLSVPTEAGHYGVLIEYYCKAGQYDKAVKLLDKL----IEKDIILRPQSTL 365

Query: 184 -----AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
                A N L+  +C    QT++A   + ++ K+   D  S   L+ G  +EG+ + A +
Sbjct: 366 HMELSAYNPLIEYLC-NNGQTAKAETLVRQLMKLGVQDPTSLNTLIRGHSQEGSPDSAFE 424

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
               M+ R + + E   AY++ + + ++  +  +A   L  M   +  P    F + ++ 
Sbjct: 425 LLKIMLRR-KVDSEKS-AYDSLVQSYLKKNEPADAKAALDSMIENDHLPDSSLFRSVMES 482

Query: 299 L 299
           L
Sbjct: 483 L 483



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 113/292 (38%), Gaps = 36/292 (12%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N M++   +  + E+       MKE  +  ++ T+ ++   Y    + D+A+   + M
Sbjct: 187 TYNTMINGYNRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGYASVDRVDDALRLVEEM 246

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS-FAILLEGWEKEGN 232
              G++ + +  ++LL  +C  E  +         V K V P  +S F  L+    K GN
Sbjct: 247 KGLGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYVAPTDNSIFMRLISSQCKAGN 306

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           ++ A      M+ R    P     Y   +    +  Q D+A+K L  +  +         
Sbjct: 307 LDAAADVLKAMI-RLSV-PTEAGHYGVLIEYYCKAGQYDKAVKLLDKLIEK--------- 355

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
               DI+++   + H                +   YN + E L  N +  + E    +++
Sbjct: 356 ----DIILRPQSTLHM---------------ELSAYNPLIEYLCNNGQTAKAETLVRQLM 396

Query: 353 KNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
           K   Q PT LN  T I        P+ A E+   +L   +   E SA + LV
Sbjct: 397 KLGVQDPTSLN--TLIRGHSQEGSPDSAFELLKIMLRRKV-DSEKSAYDSLV 445


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 157/363 (43%), Gaps = 9/363 (2%)

Query: 67   DIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVL 123
            D+ S +   GI+P   +   ++     +     A++FF+   GRG     Y +N ++  L
Sbjct: 1106 DMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGL 1165

Query: 124  GKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182
             + G ++++   + +M + G      TF  + D  C  GK  EA    ++M   G E D+
Sbjct: 1166 SRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDI 1225

Query: 183  VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242
            +  N+L++ +C           F +   + +  +  S+ IL+ G+ K+  ++EA + F E
Sbjct: 1226 LTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEE 1285

Query: 243  MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
            M  R +      + Y T +  L +  +V  A K    M+    F  L  +   LD L K 
Sbjct: 1286 M--RPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKN 1343

Query: 303  NDSTHAVQLWD-IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL 361
                 A+ L+  I    H   P+   ++++ + + +  ++ E  K F E+ KN  +P  +
Sbjct: 1344 GHLEEAMDLFQSIKKTEHK--PNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTI 1401

Query: 362  NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
                 I  L +      A+++   + E G LP   + N ++  L     + +  +  EEM
Sbjct: 1402 AYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEM 1461

Query: 422  LNR 424
             NR
Sbjct: 1462 RNR 1464



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 131/298 (43%), Gaps = 6/298 (2%)

Query: 107  RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
            RG     + + +++D L K G+  +    + +M+  G    + T+ ++ +  C  G+ ++
Sbjct: 1184 RGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLED 1243

Query: 166  AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILL 224
            A   F+ ++  G++ +V + N L++  C+ + +   A  F   ++ K + P   ++  L+
Sbjct: 1244 ATKLFESLADRGIKLNVFSYNILINGYCK-DQKIDEAFRFFEEMRPKGLKPSTVTYNTLI 1302

Query: 225  EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
                + G V  A K F EM    ++    +  Y   L  L +   ++EA+   + +K   
Sbjct: 1303 GALCQSGRVRTAQKLFVEMQTCGQF--LKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTE 1360

Query: 285  CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
              P ++ FS  LD + +      A + +D  +  +G  PD++ YN++   L     + E 
Sbjct: 1361 HKPNIEVFSILLDGMCRAGKLEEAWKQFD-EISKNGLEPDTIAYNILINGLCNKGMLSEA 1419

Query: 345  EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
             K   +M +    P  +     I  LL  +E   AI++   +      P EA  + LL
Sbjct: 1420 VKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 1477



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 125/273 (45%), Gaps = 8/273 (2%)

Query: 107  RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDE 165
            +G+      +N +++ L   G+ E        + + G+ L++ ++  + + YC   K DE
Sbjct: 1219 KGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDE 1278

Query: 166  AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
            A   F+ M   G++   V  N+L+ A+C+     +    F+            ++ +LL+
Sbjct: 1279 AFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLD 1338

Query: 226  GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            G  K G++EEA   F + +++ E  P ++  +   L  + R  +++EA K    +     
Sbjct: 1339 GLCKNGHLEEAMDLF-QSIKKTEHKP-NIEVFSILLDGMCRAGKLEEAWKQFDEISKNGL 1396

Query: 286  FPTLKFFSNALDILVKLNDSTHAVQL-WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P    ++  ++ L      + AV+L W   M   G  PDS+T+N+I + L+K   +HE 
Sbjct: 1397 EPDTIAYNILINGLCNKGMLSEAVKLLWQ--MEEKGCLPDSITFNVIIQNLLKENEIHEA 1454

Query: 345  EKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
             +   EM    + P      T++ + L + +P+
Sbjct: 1455 IQLLEEMRNRNFSPD--EAVTSMLLCLASFDPQ 1485



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 139/367 (37%), Gaps = 75/367 (20%)

Query: 149  TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            T+  I D+ C  G   EA+  F  M   G+  DVV  +SL+  +CR   +   ALEF   
Sbjct: 1087 TYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCR-FGRLKEALEFFKE 1145

Query: 209  ------------------------------------VKKIVDPDGDSFAILLEGWEKEGN 232
                                                V +   PD  +F IL++G  KEG 
Sbjct: 1146 MEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGK 1205

Query: 233  VEEANKTFGEMVERFEWNPEHVLAYETFLITLI-----------------RG-------- 267
            V EA +    M  R +     +L Y T +  L                  RG        
Sbjct: 1206 VGEAQQILELM--RHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSY 1263

Query: 268  ----------KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
                      +++DEA +F   M+ +   P+   ++  +  L +      A +L+ + M 
Sbjct: 1264 NILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLF-VEMQ 1322

Query: 318  FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
              G F    TY ++ + L KN  + E    F  + K E +P     +  +  +  A + E
Sbjct: 1323 TCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLE 1382

Query: 378  IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437
             A + ++ I +NG+ P   + N L+ GL N G LS+  +   +M  +  L   +T + + 
Sbjct: 1383 EAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVII 1442

Query: 438  KAFYNES 444
            +    E+
Sbjct: 1443 QNLLKEN 1449



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 125/281 (44%), Gaps = 4/281 (1%)

Query: 165  EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            +AV  FD M+  G+  D      L++ +C+   +T  A++   ++K     D  ++ +++
Sbjct: 1034 DAVQLFDEMTKKGLLGDAKTYGILINGLCKAR-KTGLAIKLHEKMKGNCKGDVFTYGMII 1092

Query: 225  EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
            +   K+G   EA   F EM+      P+ V+ Y + +  L R  ++ EAL+F + M+G  
Sbjct: 1093 DALCKDGMTTEALDMFSEMIGAGIL-PD-VVVYSSLMDGLCRFGRLKEALEFFKEMEGRG 1150

Query: 285  CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
                +  +++ +  L +           + +MV  G  PD+ T+ ++ + L K  +V E 
Sbjct: 1151 ISADVYTYNSLIHGLSRAGLWKEVTWFLN-LMVDRGFSPDAFTFTILIDGLCKEGKVGEA 1209

Query: 345  EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            ++    M     +P  L   T +  L    + E A +++  + + GI     S N L+ G
Sbjct: 1210 QQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILING 1269

Query: 405  LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
                 ++ +  RF EEM  + +    VT + L  A     R
Sbjct: 1270 YCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGR 1310



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 132/316 (41%), Gaps = 16/316 (5%)

Query: 149  TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
            TF  +  S    G Y      +  ++  G++ D+  +N L+   C           F   
Sbjct: 948  TFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGF 1007

Query: 209  VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
            +K+  +PD  +   L++G   E  + +A + F EM ++          Y   +  L + +
Sbjct: 1008 LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAK--TYGILINGLCKAR 1065

Query: 269  QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
            +   A+K    MKG NC   +  +   +D L K   +T A+ ++   M+  G  PD + Y
Sbjct: 1066 KTGLAIKLHEKMKG-NCKGDVFTYGMIIDALCKDGMTTEALDMFS-EMIGAGILPDVVVY 1123

Query: 329  NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI-W--NY 385
            + + + L +  R+ E  +FF EM   E +    +  T  +++       +  E+ W  N 
Sbjct: 1124 SSLMDGLCRFGRLKEALEFFKEM---EGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNL 1180

Query: 386  ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----ILIYEVTMHKLKKAFY 441
            +++ G  P   +   L+ GL   G++ + ++  E M ++     IL Y   M+ L     
Sbjct: 1181 MVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGL--CLV 1238

Query: 442  NESRSMRDIFDSLERR 457
             +      +F+SL  R
Sbjct: 1239 GQLEDATKLFESLADR 1254


>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 882

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 136/331 (41%), Gaps = 43/331 (12%)

Query: 96  SSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFAS 152
           S A+ FF W  R  G     + +  MV +LG+   F  +   +  M +DG   ++ T+  
Sbjct: 367 SVALSFFYWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNR 426

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           +  SY  A    EA+  F+ M   G E D V   +L+  I  +      A+    R++++
Sbjct: 427 LIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLID-IHAKAGFLDVAMSMYERMQEV 485

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            + PD  ++++++    K GN+  A++ F EMV+  +    +++ Y   +    + +   
Sbjct: 486 GLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVD--QGCVPNIVTYNILIALQAKARNYQ 543

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
            ALK  R M+            NA                        G  PD +TY+++
Sbjct: 544 TALKLYRDMQ------------NA------------------------GFKPDKVTYSIV 567

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
            E L     + E E  F EM +N W P        I +   A   E A E ++ +L  G+
Sbjct: 568 MEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAMLRAGL 627

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEML 422
           LP   + N LL     + RL D     + M+
Sbjct: 628 LPNVPTCNSLLSAFLRVHRLPDAYNLLQNMV 658


>gi|356506793|ref|XP_003522160.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At4g17915-like [Glycine max]
          Length = 461

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 138/325 (42%), Gaps = 17/325 (5%)

Query: 104 WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           WA     LS    N+ V  L K  +      A+      GVL  + T+ ++ D+YC    
Sbjct: 4   WAPLKSSLSTKLLNITVSSLCKAKQIPNAETAIVDGIRLGVLPDVVTYNTLIDAYCRFAT 63

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFA 221
            D A      M   G+  DVV+ N+L+S   R+ +  S++L+  +  +K+ ++PD  S  
Sbjct: 64  LDVAYSVLARMHDAGIPPDVVSFNTLISGAVRK-SLFSKSLDLFDEMLKRGINPDAWSHN 122

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
           IL+    + G  +EAN+ F E+V R E +P     Y   +  L +   V  AL   R ++
Sbjct: 123 ILMNCLFQLGKPDEANRVFKEIVLRDEVHPA---TYNIMINGLCKNGYVGNALSLFRNLQ 179

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH-----GAFPDSLTYNMIFECLI 336
                P +  + NAL     +N    A +L D   V       G  P+++TY  +  C  
Sbjct: 180 RHGFVPQVLTY-NAL-----INGLCKARRLKDARRVLKEFGETGNEPNAVTYTTVMTCCF 233

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           + +   E  +   EM    +        T I  ++     + A EI   ++ +G+ P   
Sbjct: 234 RCRLFEEGLEILSEMRSLGFTFDGFAYCTVIAAMIKTGRMQEAEEIVEMMVSSGVRPDLV 293

Query: 397 SANELLVGLRNLGRLSDVRRFAEEM 421
           S N L+      GRL D  R  +E+
Sbjct: 294 SYNTLINLYCRQGRLDDALRLLDEI 318



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 145/337 (43%), Gaps = 14/337 (4%)

Query: 83  LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142
           L++ + QL    P  A   F+       + P  +N+M++ L KNG      +  R ++  
Sbjct: 124 LMNCLFQLG--KPDEANRVFKEIVLRDEVHPATYNIMINGLCKNGYVGNALSLFRNLQRH 181

Query: 143 G-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           G V  + T+ ++ +  C A +  +A          G E + V   ++++  C +      
Sbjct: 182 GFVPQVLTYNALINGLCKARRLKDARRVLKEFGETGNEPNAVTYTTVMTC-CFRCRLFEE 240

Query: 202 ALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
            LE L+ ++ +    DG ++  ++    K G ++EA +   EM+      P+ +++Y T 
Sbjct: 241 GLEILSEMRSLGFTFDGFAYCTVIAAMIKTGRMQEAEEIV-EMMVSSGVRPD-LVSYNTL 298

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +    R  ++D+AL+ L  ++GE         +  +D L K  +   A +  + M    G
Sbjct: 299 INLYCRQGRLDDALRLLDEIEGEGLECDQYTHTIIVDGLCKAGNFDGAQRHLNYMNSL-G 357

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEM-IKNEWQPTPLNCATAITMLLDADEPEIA 379
              + + +N   + L K   +    + F  M +K+ +  T       +  L  A     A
Sbjct: 358 FGSNLVAFNCFLDGLGKAGHIDHALRLFEVMEVKDSFTYT-----IVVHNLCRARRFLCA 412

Query: 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
            ++    L+ G   L A+   ++VGLR++G  ++ R+
Sbjct: 413 SKVLVSCLKCGYQVLRATQRAVIVGLRSIGYANEARK 449


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 130/309 (42%), Gaps = 39/309 (12%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA----------------- 191
           T+ ++   YC AG+  +A+    VM   G+E D +   +++ A                 
Sbjct: 259 TYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQEM 318

Query: 192 ------------------ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
                             +C++         F N ++K   P+   + +L++G+ K G+V
Sbjct: 319 DEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSV 378

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           E+A +    M++   +NP+ V+ Y   +  L +  +V+EA+ + +  +         F+S
Sbjct: 379 EDAIRLLHRMIDE-GFNPD-VVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYS 436

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
           + +D L K      A +L++  M   G   DS  YN + +   K+ +V E    F  M +
Sbjct: 437 SLIDGLGKAGRVDEAERLFE-EMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEE 495

Query: 354 NE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
            E    T       I+ +      E A+++W+ +++ GI P  A    L  GL   G+++
Sbjct: 496 EEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCLSGKVA 555

Query: 413 DVRRFAEEM 421
              +  +E+
Sbjct: 556 RACKILDEL 564



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 119/288 (41%), Gaps = 6/288 (2%)

Query: 139 MKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           M E G+   P  F+ +    C  GK +E    F+ M   G + +V     L+    +   
Sbjct: 318 MDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKT-G 376

Query: 198 QTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
               A+  L+R + +  +PD  ++++++ G  K G VEEA   F     RF     + + 
Sbjct: 377 SVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYF--QTCRFNGLAINSMF 434

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
           Y + +  L +  +VDEA +    M  + C      ++  +D   K      A+ L+  M 
Sbjct: 435 YSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRME 494

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
              G      TY ++   + K  R  E  K +  MI     PT        T L  + + 
Sbjct: 495 EEEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCLSGKV 554

Query: 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424
             A +I + +   G++ L+A+  +++  L   GR+ +  + A+ +  R
Sbjct: 555 ARACKILDELAPMGVI-LDAACEDMINTLCKAGRIKEACKLADGITER 601



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 121/307 (39%), Gaps = 41/307 (13%)

Query: 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
           N ++   GK G  E++    R MKE+G+  +L T+  + +    A   D A   F+VM  
Sbjct: 191 NSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMES 250

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVE 234
             ++ DVV  N+++   C+   QT +ALE L  ++ K ++ D  ++  +++    + +  
Sbjct: 251 GRIKPDVVTYNTMIKGYCKA-GQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFS 309

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
                + EM E+    P H         +L+ G    E                      
Sbjct: 310 SCVALYQEMDEKGLQVPPHAF-------SLVIGGLCKEG--------------------- 341

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
                 KLN+     +     M+  G+ P+   Y ++ +   K   V +  +  H MI  
Sbjct: 342 ------KLNEGYAVFE----NMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDE 391

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
            + P  +  +  +  L      E A++ +     NG+       + L+ GL   GR+ + 
Sbjct: 392 GFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEA 451

Query: 415 RRFAEEM 421
            R  EEM
Sbjct: 452 ERLFEEM 458


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 123/274 (44%), Gaps = 8/274 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +F  +   +C   K   A+ +F  ++  G    +V  N+LL  +C  E++ S AL+  ++
Sbjct: 17  SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCV-EDRVSEALDLFHQ 75

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K   P+  +F  L+ G  +EG V EA      MVE     P  +  Y T +  + +  
Sbjct: 76  MCK---PNVVTFTTLMNGLCREGRVVEAVALLDRMVED-GLQPNQI-TYGTIVDGMCKMG 130

Query: 269 QVDEALKFLRVMKG-ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
               AL  LR M+   +  P +  +S  +D L K    T A  L+ I M   G FPD +T
Sbjct: 131 DTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLF-IEMQDKGIFPDIVT 189

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y+ +      + +  E ++   EM+  +  P  +  +  I  L+   +   A ++   ++
Sbjct: 190 YSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMI 249

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            +G+ P   + N LL GL + G+L D     + M
Sbjct: 250 SSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAM 283



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 152/361 (42%), Gaps = 20/361 (5%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYCGA 160
           R    G + +   +  +VD + K G      N +R M+E   +   +  +++I D     
Sbjct: 106 RMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKD 165

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR--VKKIVDPDGD 218
           G++ +A   F  M   G+  D+V  + +++  C    + S A   L    V+KI  PD  
Sbjct: 166 GRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFC-SSGKWSEAQRLLQEMLVRKI-SPDVV 223

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +F+ L+    KEG++  A     EM+        +V+   T L  L    ++ +AL+  +
Sbjct: 224 TFSGLINALVKEGDLNSAQDLLQEMIS--SGVCPNVVTCNTLLDGLCDSGKLKDALEMFK 281

Query: 279 VMK-------GENCF----PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            M+         + F    P ++ ++  +  L+       A +L++  M   G  PD++T
Sbjct: 282 AMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYE-EMPHRGIVPDTVT 340

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y+ +   L K  R+ E  + F  M    + P  +   T IT    A   +  +E++  + 
Sbjct: 341 YSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMG 400

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
             GI+    +   L+ G R +G ++      +EM++  +    +T+  +    +++    
Sbjct: 401 RRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKEELK 460

Query: 448 R 448
           R
Sbjct: 461 R 461


>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
 gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
 gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 140/316 (44%), Gaps = 7/316 (2%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           R+ P    +N M+    K G+ ++    +R M+  G      T+ ++  +      +   
Sbjct: 252 RIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSC 311

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           V  +  M   G++    A + ++  +C++         F N ++K   P+   + +L++G
Sbjct: 312 VALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDG 371

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + K G+VE+A +    M++   + P+ V+ Y   +  L +  +V+EAL +    + +   
Sbjct: 372 YAKSGSVEDAIRLLHRMIDE-GFKPD-VVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLA 429

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
               F+S+ +D L K      A +L++  M   G   DS  YN + +   K+++V E   
Sbjct: 430 INSMFYSSLIDGLGKAGRVDEAERLFE-EMSEKGCTRDSYCYNALIDAFTKHRKVDEAIA 488

Query: 347 FFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
            F  M + E    T       ++ +      E A+++W+ +++ GI P  A    L  GL
Sbjct: 489 LFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGL 548

Query: 406 RNLGRLSDVRRFAEEM 421
              G+++   +  +E+
Sbjct: 549 CLSGKVARACKILDEL 564



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 134/297 (45%), Gaps = 28/297 (9%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G ++ P+A++L++  L K G+  + +     M   G   ++  +  + D Y  +G  ++
Sbjct: 321 KGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVED 380

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS-----F 220
           A+     M   G + DVV  + +++ +C+   +   AL++ +  +     DG +     +
Sbjct: 381 AIRLLHRMIDEGFKPDVVTYSVVVNGLCKN-GRVEEALDYFHTCR----FDGLAINSMFY 435

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK-FLRV 279
           + L++G  K G V+EA + F EM E+      +   Y   +    + ++VDEA+  F R+
Sbjct: 436 SSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSY--CYNALIDAFTKHRKVDEAIALFKRM 493

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
            + E C  T+  ++  L  + K + +  A++LWD MM+  G  P +  +  +   L  + 
Sbjct: 494 EEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWD-MMIDKGITPTAACFRALSTGLCLSG 552

Query: 340 RVHEVEKFFHEMIKNEWQPTPLN------CATAITMLLDADEPEIAIEIWNYILENG 390
           +V    K   E+        P+       C   I  L  A   + A ++ + I E G
Sbjct: 553 KVARACKILDEL-------APMGVILDAACEDMINTLCKAGRIKEACKLADGITERG 602



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 109/237 (45%), Gaps = 6/237 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A N ++   GK G  E++    R MKE+G+  +L T+  + +    A   D A   F+VM
Sbjct: 189 AANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVM 248

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
               ++ D+V  N+++   C+   QT +A+E L  ++ +  + D  ++  +++    + +
Sbjct: 249 ESGRIKPDIVTYNTMIKGYCKA-GQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSD 307

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
                  + EM E+    P H  A+   +  L +  +++E       M  +   P +  +
Sbjct: 308 FGSCVALYQEMDEKGIQVPPH--AFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIY 365

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
           +  +D   K      A++L    M+  G  PD +TY+++   L KN RV E   +FH
Sbjct: 366 TVLIDGYAKSGSVEDAIRLLH-RMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFH 421



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 8/170 (4%)

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGR----GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           ++ VL   Y    S  D  R   R    G +     ++++V+ L KNGR E+  +     
Sbjct: 364 IYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTC 423

Query: 140 KEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           + DG+ ++   ++S+ D    AG+ DEA   F+ MS  G  +D    N+L+ A  +   +
Sbjct: 424 RFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHR-K 482

Query: 199 TSRALEFLNRV--KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
              A+    R+  ++  D    ++ ILL G  KE   EEA K +  M+++
Sbjct: 483 VDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDK 532



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 14/186 (7%)

Query: 98  AVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFD 155
           A+D+F      G  ++   ++ ++D LGK GR ++       M E G       + ++ D
Sbjct: 416 ALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALID 475

Query: 156 SYCGAGKYDEAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIV 213
           ++    K DEA+  F  M    G +Q V     LLS + + E++   AL+  +  + K +
Sbjct: 476 AFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFK-EHRNEEALKLWDMMIDKGI 534

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL---AYETFLITLIRGKQV 270
            P    F  L  G    G V  A K   E+       P  V+   A E  + TL +  ++
Sbjct: 535 TPTAACFRALSTGLCLSGKVARACKILDELA------PMGVILDAACEDMINTLCKAGRI 588

Query: 271 DEALKF 276
            EA K 
Sbjct: 589 KEACKL 594


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/391 (21%), Positives = 151/391 (38%), Gaps = 39/391 (9%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +   +G + +   +N ++D L K    +      + M + GV  S  T+ +I D  C 
Sbjct: 248 FQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCK 307

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
           A   D A   F  M   GV+ D V  N+++  +C+ +        F   + K V PD  +
Sbjct: 308 AQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLT 367

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + I+++G  K  +V+ A   F +M+++    P +   Y   +   +   Q +E ++ ++ 
Sbjct: 368 YTIIIDGLCKAQSVDRAEGVFQQMIDK-GVKPNNG-TYNCLIHGYLSTGQWEEVVQRIKE 425

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM------------------------ 315
           M   +  P +  +   LD L K      A  L+D M                        
Sbjct: 426 MSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGA 485

Query: 316 ----------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
                     MV +G  P+   +N +     K   + EV   F +M +    P  +   T
Sbjct: 486 LSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGT 545

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
            I  L      + A+  +N ++  G+ P     N L+ GL  + +   V     EMLN+ 
Sbjct: 546 LIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQG 605

Query: 426 ILIYEVTMHKLKKAFYNESRSM--RDIFDSL 454
           I    V  + +      E R M  R + DS+
Sbjct: 606 IRPDIVFFNTVLCNLCKEGRVMEARRLIDSM 636



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 140/361 (38%), Gaps = 37/361 (10%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +   +G +     + +++D L K    ++     + M + GV  +  T+  +   Y  
Sbjct: 353 FQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLS 412

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G+++E V     MS H +E DV     LL  +C+          F + ++K + P    
Sbjct: 413 TGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTI 472

Query: 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
           + I+L G+ K+G + E +     MV     +P H + + T +    +   +DE +     
Sbjct: 473 YGIMLHGYGKKGALSEMHDLLNLMVAN-GISPNHRI-FNTVICAYAKRAMIDEVMHIFIK 530

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM------------------------ 315
           MK +   P +  +   +D L KL     AV  ++ M                        
Sbjct: 531 MKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDK 590

Query: 316 ----------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
                     M+  G  PD + +N +   L K  RV E  +    M+    +P  ++  T
Sbjct: 591 WEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNT 650

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
            I     A   + A+++ + ++  G+ P   S N LL G    GR+ +      EML + 
Sbjct: 651 LIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKG 710

Query: 426 I 426
           +
Sbjct: 711 V 711



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 4/240 (1%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++    K    +++ +    MK+ G+  ++ T+ ++ D+ C  G+ D+AV+ F+ M 
Sbjct: 508 FNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMI 567

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             GV  + V  NSL+  +C  +        FL  + + + PD   F  +L    KEG V 
Sbjct: 568 NEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVM 627

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
           EA +    MV      P+ V++Y T +       ++DEA+K L  M      P +  ++ 
Sbjct: 628 EARRLIDSMV-CMGLKPD-VISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNT 685

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            L    K     +A  L+  M+   G  P   TYN I   L ++ R  E  + +  MIK+
Sbjct: 686 LLHGYCKAGRIDNAYCLFREML-RKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKS 744



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 139/324 (42%), Gaps = 9/324 (2%)

Query: 106 GRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK 162
           G+    SP   ++N++++     G+ ++ ++   +  E GV   + T+ +I D  C A +
Sbjct: 184 GQDSSCSPDVVSYNIVINGFFNEGQVDKAYS---LFLEMGVSPDVVTYNTIIDGLCKAQE 240

Query: 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222
            D A   F  M   GV+ + V  N+++  +C+ +        F   V K V P   ++  
Sbjct: 241 VDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNT 300

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282
           +++G  K   V+ A   F +M++R    P+HV  Y T +  L + + +D+A    + M  
Sbjct: 301 IIDGLCKAQAVDRAEGVFQQMIDR-GVKPDHV-TYNTIIDGLCKAQAIDKAEGVFQQMID 358

Query: 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342
           +   P    ++  +D L K      A  ++   M+  G  P++ TYN +    +   +  
Sbjct: 359 KGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQ-QMIDKGVKPNNGTYNCLIHGYLSTGQWE 417

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           EV +   EM  ++ +P        +  L    +   A  +++ ++  GI P       +L
Sbjct: 418 EVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIML 477

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRI 426
            G    G LS++      M+   I
Sbjct: 478 HGYGKKGALSEMHDLLNLMVANGI 501



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 151/384 (39%), Gaps = 80/384 (20%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC-------------RQ 195
           T++ +   +C  G+ +    +F ++   G   D + VN LL  +C             RQ
Sbjct: 86  TYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLLRQ 145

Query: 196 ENQTS-------------------RALEFLNRVKKIVD-------PDGDSFAILLEGWEK 229
             +                     RA E    +  +VD       PD  S+ I++ G+  
Sbjct: 146 MPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFN 205

Query: 230 EGNVEEANKTFGEM---------------------VERFE----------WNPEHVLAYE 258
           EG V++A   F EM                     V+R E            P +V  Y 
Sbjct: 206 EGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNV-TYN 264

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
           T +  L + ++VD A    + M  +   P+   ++  +D L K      A  ++   M+ 
Sbjct: 265 TIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQ-QMID 323

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
            G  PD +TYN I + L K + + + E  F +MI    +P  L     I  L  A   + 
Sbjct: 324 RGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDR 383

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTMH 434
           A  ++  +++ G+ P   + N L+ G  + G+  +V +  +EM    L   +  Y + + 
Sbjct: 384 AEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLD 443

Query: 435 KL-KKAFYNESRSMRDIFDSLERR 457
            L K    NE+RS+   FDS+ R+
Sbjct: 444 YLCKNGKCNEARSL---FDSMIRK 464



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 146/363 (40%), Gaps = 49/363 (13%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGK-------NGRFEQMWNAVRVMKEDGVLSLPTFASI 153
           F +   +G + S   +N ++D L K        G F+QM +  R +K D V    T+ +I
Sbjct: 283 FQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMID--RGVKPDHV----TYNTI 336

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213
            D  C A   D+A   F  M   GV+ D +    ++  +C+ ++       F   + K V
Sbjct: 337 IDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGV 396

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
            P+  ++  L+ G+   G  EE  +   EM    +  P+ V  Y   L  L +  + +EA
Sbjct: 397 KPNNGTYNCLIHGYLSTGQWEEVVQRIKEM-SAHDLEPD-VFTYGLLLDYLCKNGKCNEA 454

Query: 274 LKFLRVMKGENCFPTLKFFS----------------NALDILVKLNDS-THAV------- 309
                 M  +   P++  +                 + L+++V    S  H +       
Sbjct: 455 RSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICA 514

Query: 310 -----QLWDIMMVF-----HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
                 + ++M +F      G  P+ +TY  + + L K  RV +    F++MI     P 
Sbjct: 515 YAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPN 574

Query: 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419
            +   + +  L   D+ E   E++  +L  GI P     N +L  L   GR+ + RR  +
Sbjct: 575 NVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLID 634

Query: 420 EML 422
            M+
Sbjct: 635 SMV 637



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 138/319 (43%), Gaps = 12/319 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + + L++D L KNG+  +  +    M   G+  S+  +  +   Y   G   E     ++
Sbjct: 436 FTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNL 495

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M  +G+  +    N+++ A  ++         F+   ++ + P+  ++  L++   K G 
Sbjct: 496 MVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGR 555

Query: 233 VEEANKTFGEMVERFEWNPEHV----LAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           V++A   F +M+      P +V    L Y   L T+ + ++V+E   FL ++  +   P 
Sbjct: 556 VDDAVLQFNQMINE-GVTPNNVVFNSLVYG--LCTVDKWEKVEEL--FLEMLN-QGIRPD 609

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
           + FF+  L  L K      A +L D  MV  G  PD ++YN + +      R+ E  K  
Sbjct: 610 IVFFNTVLCNLCKEGRVMEARRLID-SMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLL 668

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
             M+    +P  ++  T +     A   + A  ++  +L  G+ P   + N +L GL   
Sbjct: 669 DGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRS 728

Query: 409 GRLSDVRRFAEEMLNRRIL 427
           GR S+ R     M+  R L
Sbjct: 729 GRFSEARELYVNMIKSRKL 747



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 136/334 (40%), Gaps = 47/334 (14%)

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL------E 204
           A+I  +  G     +A+  FD + +H     V A+N LLS + R +  +S  L       
Sbjct: 12  AAIGRARSGNLGLHDALKLFDELLLHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFNR 71

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
            L      V PD  +++I++  + + G +E     FG ++ +  W  + ++  +  L  L
Sbjct: 72  MLRDCSNKVAPDCCTYSIVIGCFCRIGRLELGFAAFG-LILKTGWRVDDIVVNQ-LLKGL 129

Query: 265 IRGKQVDEALK-FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM-------- 315
              K+V EA+   LR M    C   +  ++  L  L     +  A +L  +M        
Sbjct: 130 CDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSC 189

Query: 316 --------MVFHGAF------------------PDSLTYNMIFECLIKNKRVHEVEKFFH 349
                   +V +G F                  PD +TYN I + L K + V   E  F 
Sbjct: 190 SPDVVSYNIVINGFFNEGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQ 249

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           +M++   +P  +   T I  L  A E ++A  ++  +++ G+ P   + N ++ GL    
Sbjct: 250 QMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQ 309

Query: 410 RLSDVRRFAEEMLNRRI----LIYEVTMHKLKKA 439
            +       ++M++R +    + Y   +  L KA
Sbjct: 310 AVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKA 343



 Score = 38.5 bits (88), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 65/141 (46%), Gaps = 1/141 (0%)

Query: 116 WNLMVDVLGKNGRFEQMWNA-VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++ L ++GRF +     V ++K   + S+ T++ I D +C    +DEA   F  + 
Sbjct: 718 YNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLC 777

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
              ++ D++  N ++  + +   +      F       + P   ++ ++ E   +EG++E
Sbjct: 778 SMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLE 837

Query: 235 EANKTFGEMVERFEWNPEHVL 255
           E +  F  M +       H+L
Sbjct: 838 ELDCLFSVMEKSGTAPNSHML 858


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 143/320 (44%), Gaps = 7/320 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           +++N ++ VL  +G F+Q       M++ G+   + +F     S+C   +   A+   + 
Sbjct: 112 FSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNN 171

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEG 231
           MS  G E +VVA  +++     +EN  +   E   + +   V     +F  LL    K+G
Sbjct: 172 MSSQGCEMNVVAYCTVVGGF-YEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKG 230

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           +V+E  K   ++++R      ++  Y  F+  L +  ++D A++ +  +  +   P +  
Sbjct: 231 DVKECEKLLDKVIKRGVL--PNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVIT 288

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++N +  L K N      +++   MV  G  PDS TYN +     K   V   E+   + 
Sbjct: 289 YNNLIYGLCK-NSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDA 347

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
           + N + P      + I  L    E   A+ ++N  L  GI P     N L+ GL N G +
Sbjct: 348 VFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMI 407

Query: 412 SDVRRFAEEMLNRRILIYEV 431
            +  + A EM + + LI EV
Sbjct: 408 LEAAQLANEM-SEKGLIPEV 426



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 120/299 (40%), Gaps = 6/299 (2%)

Query: 98  AVDFFRWA-GRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A+  F  A G+G + +   +N ++  L   G   +       M E G++  + TF  + +
Sbjct: 375 ALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVN 434

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVD 214
             C  G   +A     VM   G   D+   N L+     Q  +   ALE L+  +   VD
Sbjct: 435 GLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQL-KMENALEILDVMLDNGVD 493

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  ++  LL G  K    E+  +T+  MVE+      ++  +   L +L R +++DEAL
Sbjct: 494 PDVYTYNSLLNGLCKTSKFEDVMETYKTMVEK--GCAPNLFTFNILLESLCRYRKLDEAL 551

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
             L  MK ++  P    F   +D   K  D   A  L+  M   +     + TYN+I   
Sbjct: 552 GLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHA 611

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
             +   V   EK F EM+     P        +          +  +    ++ENG +P
Sbjct: 612 FTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIP 670



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/374 (20%), Positives = 145/374 (38%), Gaps = 35/374 (9%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +    G  L    +N ++ VL K G  ++    +  + + GVL +L T+       C 
Sbjct: 204 FGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQ 263

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
            G+ D AV     +   G + DV+  N+L+  +C+        +     V + ++PD  +
Sbjct: 264 RGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYT 323

Query: 220 FAILLEGWEKEGNVEEANKTFGEMV------ERFEWN----------------------- 250
           +  L+ G+ K G V+ A +  G+ V      ++F +                        
Sbjct: 324 YNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEAL 383

Query: 251 ----PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
                 +V+ Y T +  L     + EA +    M  +   P ++ F+  ++ L K+   +
Sbjct: 384 GKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVS 443

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            A  L  +M +  G FPD  T+N++        ++    +    M+ N   P      + 
Sbjct: 444 DADGLVKVM-ISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSL 502

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           +  L    + E  +E +  ++E G  P   + N LL  L    +L +     EEM N+ +
Sbjct: 503 LNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSV 562

Query: 427 LIYEVTMHKLKKAF 440
               VT   L   F
Sbjct: 563 NPDAVTFGTLIDGF 576



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 122/284 (42%), Gaps = 11/284 (3%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N++V+ L K G        V+VM   G    + TF  +   Y    K + A+   DVM
Sbjct: 428 TFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVM 487

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
             +GV+ DV   NSLL+ +C+          +   V+K   P+  +F ILLE   +   +
Sbjct: 488 LDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKL 547

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM----KGENCFPTL 289
           +EA     EM  +   NP+ V  + T +    +   +D A    R M    K  +  PT 
Sbjct: 548 DEALGLLEEMKNK-SVNPDAV-TFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTY 605

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
               +A     KLN  T A +L+   MV     PD  TY ++ +   K   V+   KF  
Sbjct: 606 NIIIHAFT--EKLN-VTMAEKLFQ-EMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLL 661

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           EM++N + P+       I  L   D    A  I + +++ G++P
Sbjct: 662 EMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVP 705



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 113/268 (42%), Gaps = 11/268 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N+++       + E     + VM ++GV   + T+ S+ +  C   K+++ + ++  
Sbjct: 462 FTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKT 521

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEG 231
           M   G   ++   N LL ++CR   +   AL  L  +K K V+PD  +F  L++G+ K G
Sbjct: 522 MVEKGCAPNLFTFNILLESLCRYR-KLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNG 580

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           +++ A   F +M E ++ +      Y   +        V  A K  + M      P    
Sbjct: 581 DLDGAYTLFRKMEEAYKVSSS-TPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYT 639

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           +   +D   K  +     +   + M+ +G  P   T   +  CL    RV+E     H M
Sbjct: 640 YRLMVDGFCKTGNVNLGYKFL-LEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRM 698

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIA 379
           ++    P       A+  + D D+ E+A
Sbjct: 699 VQKGLVP------EAVNTICDVDKKEVA 720


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 134/314 (42%), Gaps = 7/314 (2%)

Query: 131 QMWNAVRVMKEDGVLSLPTFASIFDS----YCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           ++ NAV+++ E     L + A+++ S     C  G+  +A+   + M+MHGV  D V   
Sbjct: 302 ELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFT 361

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
           +++S  C + +  +    F    K+ +  D  +   L+ G  + G ++EA++   EMV++
Sbjct: 362 TVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDK 421

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
                  V+ Y   +    +   + EA +    M G    P +  ++   D L K  D  
Sbjct: 422 --GLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVR 479

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366
            A +L    M   G   +  TYN +   L K   + +  +   EM     +       T 
Sbjct: 480 AANELLH-EMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTL 538

Query: 367 ITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           I  L  + E + A  +   +L+ GI P  A+ N L+ G    GR+   ++  E ML + +
Sbjct: 539 IDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNV 598

Query: 427 LIYEVTMHKLKKAF 440
               VT + L K +
Sbjct: 599 RPNVVTYNSLMKQY 612



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 5/208 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G R   Y +  ++D L K+G F++  N ++ M + G+  S+ T+  + + +C +G+ +  
Sbjct: 527 GHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGG 586

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
               + M    V  +VV  NSL+   C  +N  S    +     + V P+ +++ IL++G
Sbjct: 587 KKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKG 646

Query: 227 WEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
             K  N++EA     EM+E+          +Y   +  L + K+  EA  F   M+ E  
Sbjct: 647 HCKARNMKEALYFHQEMIEKGLRLTAS---SYSALIRLLNKKKKFSEARVFFDKMRNEGL 703

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWD 313
                 +S  +DI    ++    + L D
Sbjct: 704 TAEPDVYSFYMDISFNEDNLESTITLCD 731



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 123/306 (40%), Gaps = 39/306 (12%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCG 159
           F     RG          +++ L + G  ++    ++ M + G+ + + T+  + D YC 
Sbjct: 380 FEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCK 439

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGD 218
            G   EA    + M    V  +VV   +L   +C+Q +  + A E L+ +  K ++ +  
Sbjct: 440 RGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRA-ANELLHEMCNKGLELNVY 498

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  L+ G  K GN+E+A +   EM      +   V  Y T + TL +  + D A   L+
Sbjct: 499 TYNSLINGLCKFGNLEQAMRIMTEM--EAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQ 556

Query: 279 VMKGENCFPTLKFFS----------------NALDILVKLNDSTHAVQLWDIMM------ 316
            M  +   P++  ++                  L+ +++ N   + V    +M       
Sbjct: 557 EMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDK 616

Query: 317 -------VFHGAF-----PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364
                  ++ G       P+  TYN++ +   K + + E   F  EMI+   + T  + +
Sbjct: 617 NMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYS 676

Query: 365 TAITML 370
             I +L
Sbjct: 677 ALIRLL 682


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 123/274 (44%), Gaps = 8/274 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +F  +   +C   K   A+ +F  ++  G    +V  N+LL  +C  E++ S AL+  ++
Sbjct: 17  SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCV-EDRVSEALDLFHQ 75

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           + K   P+  +F  L+ G  +EG V EA      MVE     P  +  Y T +  + +  
Sbjct: 76  MCK---PNVVTFTTLMNGLCREGRVVEAVALLDRMVED-GLQPNQI-TYGTIVDGMCKMG 130

Query: 269 QVDEALKFLRVMKG-ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
               AL  LR M+   +  P +  +S  +D L K    T A  L+ I M   G FPD +T
Sbjct: 131 DTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLF-IEMQDKGIFPDIVT 189

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y+ +      + +  E ++   EM+  +  P  +  +  I  L+   +   A ++   ++
Sbjct: 190 YSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMI 249

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            +G+ P   + N LL GL + G+L D     + M
Sbjct: 250 SSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAM 283



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 144/326 (44%), Gaps = 21/326 (6%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           +L TF ++    C   +  EA+  F  M     + +VV   +L++ +CR E +   A+  
Sbjct: 49  TLVTFNTLLHGLCVEDRVSEALDLFHQM----CKPNVVTFTTLMNGLCR-EGRVVEAVAL 103

Query: 206 LNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L+R V+  + P+  ++  +++G  K G+   A     +M E     P+ V+ Y   +  L
Sbjct: 104 LDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPD-VVIYSAIIDGL 162

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            +  +  +A      M+ +  FP +  +S  ++        + A +L   M+V     PD
Sbjct: 163 WKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLV-RKISPD 221

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
            +T++ +   L+K   ++  +    EMI +   P  + C T +  L D+ + + A+E++ 
Sbjct: 222 VVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFK 281

Query: 385 YILE-----------NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM 433
            + +           NG+ P   + N L+ GL N G+  +     EEM +R I+   VT 
Sbjct: 282 AMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTY 341

Query: 434 HKLKKAFYNESR--SMRDIFDSLERR 457
             +      +SR      +FDS+  +
Sbjct: 342 SSMINGLCKQSRLDEATQMFDSMGSK 367



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 151/356 (42%), Gaps = 20/356 (5%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYCGA 160
           R    G + +   +  +VD + K G      N +R M+E   +   +  +++I D     
Sbjct: 106 RMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKD 165

Query: 161 GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR--VKKIVDPDGD 218
           G++ +A   F  M   G+  D+V  + +++  C    + S A   L    V+KI  PD  
Sbjct: 166 GRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFC-SSGKWSEAQRLLQEMLVRKI-SPDVV 223

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           +F+ L+    KEG++  A     EM+        +V+   T L  L    ++ +AL+  +
Sbjct: 224 TFSGLINALVKEGDLNSAQDLLQEMIS--SGVCPNVVTCNTLLDGLCDSGKLKDALEMFK 281

Query: 279 VMK-------GENCF----PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            M+         + F    P ++ ++  +  L+       A +L++  M   G  PD++T
Sbjct: 282 AMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYE-EMPHRGIVPDTVT 340

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y+ +   L K  R+ E  + F  M    + P  +   T IT    A   +  +E++  + 
Sbjct: 341 YSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMG 400

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
             GI+    +   L+ G R +G ++      +EM++  +    +T+  +    +++
Sbjct: 401 RRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSK 456


>gi|449442339|ref|XP_004138939.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
           mitochondrial-like [Cucumis sativus]
          Length = 559

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 155/350 (44%), Gaps = 21/350 (6%)

Query: 67  DIESALACTGIIPTPDLVHEVL-QLSYDSPSSAVDFFRWAGRGQRLS--PYAWNLMVDVL 123
           D+E AL   G+  T DLV ++L +L +D    A  FF WA R +  S  P  +N M+D+L
Sbjct: 102 DMEGALDQVGVYLTTDLVADILHRLRFDE-KLAFRFFTWAARQENYSHEPRVYNEMIDIL 160

Query: 124 G----KNGRFEQMWNAVRVMKEDGVLSLPT--FASIFDSYCGAGKYDEAVMSFDVMSMHG 177
                K  +F  + + +  MK +   ++P      I  +Y    KY   +  F       
Sbjct: 161 SSTRYKVKQFRIVCDLLDYMKRNDKNTVPVEVLFGILRNY--TDKYLTCLQKFAKKKKVI 218

Query: 178 VEQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
           V++  ++ A N LL A+C+  +    A   L +VKK + PD +++ I+  GW +  N   
Sbjct: 219 VKRQPEINAFNLLLDALCKC-SLVEDAEALLKKVKKKLKPDANTYNIMFFGWCRVRNPGR 277

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA---LKFLRVMKGENCFPTLKFF 292
             +   EM+E   ++P++   Y T + +  +   + EA    +F+R        PT K +
Sbjct: 278 GMRVLEEMIE-LGFDPDN-FTYNTAIASFCKAGMLKEACELFEFMRTKGSALSSPTAKTY 335

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +  LV         +  + M +  G  PD  TY  + E +    +V E   F  EM 
Sbjct: 336 AIMIVALVNNGRMEECFKFLEYM-IKSGCLPDVSTYKEMIEGICVAGKVQEAYMFLEEMG 394

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           K  + P  +     + +L D    + A+   + ++E G LP   + N L+
Sbjct: 395 KKGYPPDIVTYNCFLKVLCDNKMSDDALRHCDRMIEVGCLPSVQTYNMLI 444



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 7/229 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHG--VEQDVVAVNSLLSAICRQENQTSRALEFL 206
           T+ +   S+C AG   EA   F+ M   G  +        +++        +     +FL
Sbjct: 296 TYNTAIASFCKAGMLKEACELFEFMRTKGSALSSPTAKTYAIMIVALVNNGRMEECFKFL 355

Query: 207 NR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265
              +K    PD  ++  ++EG    G V+EA     EM ++    P  ++ Y  FL  L 
Sbjct: 356 EYMIKSGCLPDVSTYKEMIEGICVAGKVQEAYMFLEEMGKK--GYPPDIVTYNCFLKVLC 413

Query: 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325
             K  D+AL+    M    C P+++ ++  + +  ++ND   A Q+W + M  +G   D 
Sbjct: 414 DNKMSDDALRHCDRMIEVGCLPSVQTYNMLISMFFEMNDHNGAFQIW-LEMDRYGCTRDV 472

Query: 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
            +Y ++ E L    +V +      E++ N+    P     +  M L  +
Sbjct: 473 DSYCIMIEGLFGCNKVGDACLLLEEVV-NKGMKLPFRKFDSFLMQLSVN 520


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 126/290 (43%), Gaps = 5/290 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVM-KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N +VD L K G   +    V VM + D    + T+ S+ D +C   +  + V  FD M
Sbjct: 266 TFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTM 325

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233
              G    V++  +L++  C+ +        F    ++ + PD  ++  L+ G    G +
Sbjct: 326 VRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRL 385

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
            +A   F EMV  +   P+ ++ Y      L +  ++ EA+  L+V++G N  P +  +S
Sbjct: 386 RDAIALFHEMVV-YGQIPD-LVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYS 443

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D + +  +   A  L+   +   G  PD  TY ++   L +   + E  K F EM +
Sbjct: 444 IVMDGMCRAGELEAARDLFS-KLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDE 502

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
           N   P            L  +E   AI+++  +L  G   ++ S   LLV
Sbjct: 503 NGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRG-FSIDVSTTTLLV 551



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 113/260 (43%), Gaps = 5/260 (1%)

Query: 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205
           S+  F+ +  S      Y   +  +  M   G+  +   +N L+++ C   N+   A   
Sbjct: 53  SIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFC-HLNRLGFAFSV 111

Query: 206 LNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
           L  + K+   P   +F  L+ G   EG + EA + F +M     + P+ VL Y T +  L
Sbjct: 112 LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGE-GFQPD-VLTYGTLINGL 169

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            +      A++FLR M+  NC PT+  +S  +D L K    T A+ L+  M+   G  P+
Sbjct: 170 CKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLA-KGISPN 228

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWN 384
           + TY+ +   L       E  + F+ MI  +  P  L   T +  L        A  + +
Sbjct: 229 NFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVD 288

Query: 385 YILENGILPLEASANELLVG 404
            ++++ + P   + N L+ G
Sbjct: 289 VMIQSDLKPDVVTYNSLMDG 308



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 1/137 (0%)

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
           A+QL+D  M   G  PD LTY  +   L K        +F   M +   +PT +  +T I
Sbjct: 143 ALQLFD-KMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTII 201

Query: 368 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
             L    +   A+ +++ +L  GI P   + + L+ GL  LG   +  R    M++R+I+
Sbjct: 202 DSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIM 261

Query: 428 IYEVTMHKLKKAFYNES 444
             ++T + L  A   E 
Sbjct: 262 PDQLTFNTLVDALCKEG 278


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 148/354 (41%), Gaps = 47/354 (13%)

Query: 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVM 168
           R S Y +N+M++VL K G+ ++    +  M+  GV  ++ T+ +I   +C  GK+  A +
Sbjct: 213 RSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARV 272

Query: 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228
            F  M   G+E D    NS +S +C                                   
Sbjct: 273 IFQTMKDKGLEPDCYTYNSFISGLC----------------------------------- 297

Query: 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           KEG +EEA+    +M+E     P  V  Y   +        +D+A  +   M  +    +
Sbjct: 298 KEGRLEEASGLICKMLEG-GLVPNAV-TYNALIDGYCNKGDLDKAYAYRDEMISKGIMAS 355

Query: 289 L---KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
           L     F +AL +  ++ D+ + ++     M   G  PD++T+N++     +        
Sbjct: 356 LVTYNLFIHALFMEGRMGDADNMIK----EMREKGMMPDAVTHNILINGYCRCGDAKRAF 411

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
               EM+    QPT +   + I +L   +  + A  +++ I + G+LP     N L+ G 
Sbjct: 412 GLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGH 471

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR--SMRDIFDSLERR 457
              G +    +  +EM N ++L  E+T + L + +  E +    R + D ++RR
Sbjct: 472 CANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRR 525



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 138/330 (41%), Gaps = 6/330 (1%)

Query: 99  VDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSY 157
           V F     +G     Y +N  +  L K GR E+    +  M E G++ +  T+ ++ D Y
Sbjct: 272 VIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGY 331

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPD 216
           C  G  D+A    D M   G+   +V  N  + A+   E +   A   +  ++ K + PD
Sbjct: 332 CNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALF-MEGRMGDADNMIKEMREKGMMPD 390

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             +  IL+ G+ + G+ + A     EMV +    P  ++ Y + +  L +  ++ EA   
Sbjct: 391 AVTHNILINGYCRCGDAKRAFGLLDEMVGK-GIQPT-LVTYTSLIYVLGKRNRMKEADAL 448

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
              ++ E   P +  F+  +D      +   A QL   M       PD +TYN + +   
Sbjct: 449 FSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMK-VLPDEITYNTLMQGYC 507

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           +  +V E  +   EM +   +P  ++  T I+      + + A  + + ++  G  P   
Sbjct: 508 REGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTIL 567

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           + N L+ GL             +EM+++ I
Sbjct: 568 TYNALIQGLCKNQEGEHAEELLKEMVSKGI 597



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 111/254 (43%), Gaps = 6/254 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G   S   +NL +  L   GR     N ++ M+E G++    T   + + YC  G    
Sbjct: 350 KGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKR 409

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILL 224
           A    D M   G++  +V   SL+  + ++ N+   A    +++++  + PD   F  L+
Sbjct: 410 AFGLLDEMVGKGIQPTLVTYTSLIYVLGKR-NRMKEADALFSKIQQEGLLPDIIVFNALI 468

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G    GN++ A +   EM +  +  P+ +  Y T +    R  +V+EA + L  MK   
Sbjct: 469 DGHCANGNIDRAFQLLKEM-DNMKVLPDEI-TYNTLMQGYCREGKVEEARQLLDEMKRRG 526

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P    ++  +    K  D   A ++ D MM   G  P  LTYN + + L KN+     
Sbjct: 527 IKPDHISYNTLISGYSKRGDMKDAFRVRDEMMT-TGFDPTILTYNALIQGLCKNQEGEHA 585

Query: 345 EKFFHEMIKNEWQP 358
           E+   EM+     P
Sbjct: 586 EELLKEMVSKGITP 599


>gi|125528152|gb|EAY76266.1| hypothetical protein OsI_04202 [Oryza sativa Indica Group]
          Length = 528

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 161/398 (40%), Gaps = 45/398 (11%)

Query: 62  HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSP--YAWNLM 119
           HA +      L   G   +  +V  VL    +S ++A   FRWA      +P  +A++ M
Sbjct: 92  HADAARARGLLERCGATASEPVVVAVLARLRNSCAAAHAAFRWASAQPGYAPGRHAYHSM 151

Query: 120 VDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179
           + +L K+ RF+     +  M+   + S      +   YC A     AV +F  +   G  
Sbjct: 152 LAILAKHRRFDDARALLDQMRRSSLASPAAVMLLIRRYCAARDVAGAVAAFRALPSLGFR 211

Query: 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW-EKEGNVEEANK 238
             V   + LL+A+CR +N    A   L   +K    +  SF ++L GW     +V EA +
Sbjct: 212 PGVAEFHGLLTALCRYKN-VQDAEHLLLSSEKEFPFETKSFNVVLNGWCNMVRSVREAKR 270

Query: 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298
            +  M    +     V++Y + +    +   +D  +K    MK     P  K ++  +  
Sbjct: 271 FWNAM--EIKGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRMKEAGVVPDRKIYNAVVYA 328

Query: 299 LVK---LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
           L K   +N++   V+     M   G  PD+ T+N +   L K ++V E  K   +M+   
Sbjct: 329 LAKGRCVNEAKALVR----SMEEKGVAPDTATFNSLIRPLCKARQVQEARKMLDDMLGRG 384

Query: 356 WQPTP------LNCATAITMLLD--------ADEPEIAI------------------EIW 383
             P+       L+ A +   + D          +PE+                    ++W
Sbjct: 385 LSPSVRTFHALLDVARSPIEVFDLLDKMKELQCDPEMDTFIMLIRKFCRWRQHDSVEKLW 444

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
           + +  NG+ P  ++   L+ GL   GRL +  ++ EEM
Sbjct: 445 SAMPANGLSPDRSAYIVLIHGLFLNGRLEESAKYYEEM 482



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 98/246 (39%), Gaps = 15/246 (6%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRV--MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172
            W  MV  + +  RF   WNA+ +  +K D V    ++ S+   +  AG  D  +  F+ 
Sbjct: 257 GWCNMVRSVREAKRF---WNAMEIKGIKRDVV----SYGSMISCFSKAGSLDTVMKLFNR 309

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   GV  D    N+++ A+ +            +  +K V PD  +F  L+    K   
Sbjct: 310 MKEAGVVPDRKIYNAVVYALAKGRCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKARQ 369

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           V+EA K   +M+ R   +P    +  TF   L   +   E    L  MK   C P +  F
Sbjct: 370 VQEARKMLDDMLGR-GLSP----SVRTFHALLDVARSPIEVFDLLDKMKELQCDPEMDTF 424

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
              +    +        +LW  M   +G  PD   Y ++   L  N R+ E  K++ EM 
Sbjct: 425 IMLIRKFCRWRQHDSVEKLWSAMPA-NGLSPDRSAYIVLIHGLFLNGRLEESAKYYEEMK 483

Query: 353 KNEWQP 358
              + P
Sbjct: 484 AKGFPP 489



 Score = 42.0 bits (97), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 9/205 (4%)

Query: 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-TLKFFSNALDILVKLNDSTH-AVQL 311
           V  +   L  L R K V +A   L  +  E  FP   K F+  L+    +  S   A + 
Sbjct: 214 VAEFHGLLTALCRYKNVQDAEHLL--LSSEKEFPFETKSFNVVLNGWCNMVRSVREAKRF 271

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
           W+ M +  G   D ++Y  +  C  K   +  V K F+ M +    P        +  L 
Sbjct: 272 WNAMEI-KGIKRDVVSYGSMISCFSKAGSLDTVMKLFNRMKEAGVVPDRKIYNAVVYALA 330

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 431
                  A  +   + E G+ P  A+ N L+  L    ++ + R+  ++ML R +     
Sbjct: 331 KGRCVNEAKALVRSMEEKGVAPDTATFNSLIRPLCKARQVQEARKMLDDMLGRGLSPSVR 390

Query: 432 TMHKLKKAFYNESRSMRDIFDSLER 456
           T H    A  + +RS  ++FD L++
Sbjct: 391 TFH----ALLDVARSPIEVFDLLDK 411


>gi|255660976|gb|ACU25657.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 376

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 164/364 (45%), Gaps = 20/364 (5%)

Query: 80  TPD-LVHEVLQLSYDSPSSAVDFFR-W---AGRGQRLSPYAWNLMVDVLGKNGRFEQMWN 134
           +PD +V+ ++   Y   +   D F  W      G R S  ++N M+  L  NG+ +++ +
Sbjct: 22  SPDAVVYNIMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSFNTMMRGLFDNGKVDEVIS 80

Query: 135 AVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193
              +M E G V    T+  +   +C  G  D+++   ++    G   D  A +++++ +C
Sbjct: 81  IWELMNESGFVEDSRTYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLC 140

Query: 194 RQENQTSRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
           ++ N   RA+  LN  +K    P+   +  L+ G       E+A + F EM      +P 
Sbjct: 141 KEAN-LDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREM-GTMHCSPT 198

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312
            ++ Y T +    + K   EA   ++ +  +   P +  +S  ++ L   +    A+QLW
Sbjct: 199 -IITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCLDHKVARALQLW 257

Query: 313 DIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML-- 370
           +  +   G  PD   +N++   L    ++      + +M  N W+  P N  +  T++  
Sbjct: 258 N-QVTSKGFKPDVQMHNILIRGLCSVGKMQLALSLYFDM--NLWKCAP-NLVSHNTLMEG 313

Query: 371 --LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 428
              D D    A+ IW  IL NG+ P   S N  L GL +  R+SD   F ++ + ++I++
Sbjct: 314 FYKDGDIRN-ALVIWARILRNGLEPDIISYNITLEGLCSCNRISDAILFLDDAVTKKIVL 372

Query: 429 YEVT 432
            + T
Sbjct: 373 TKNT 376


>gi|255660938|gb|ACU25638.1| pentatricopeptide repeat-containing protein [Citharexylum
           montevidense]
          Length = 481

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 135/291 (46%), Gaps = 15/291 (5%)

Query: 77  IIPTPD--LVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNL-----MVDVLGKNGRF 129
           ++P+ D  LV+ VL  +  S   A+ FFRW    ZR + +  N      ++++LG+  + 
Sbjct: 6   LVPSFDHELVYNVLHGAKKS-EHALQFFRWV---ZRSNLFEHNRETHLKIIEILGRASKL 61

Query: 130 EQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188
                 +  M + G+      +  + DSY  AG   E+V  F  M   GVE+ + + + L
Sbjct: 62  NHARCILLDMPKKGLQWDEDLWVLMIDSYGKAGIVQESVKLFHKMEELGVERTIKSYDVL 121

Query: 189 LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
              I R+         F   + + ++P   +F I++ G+   G VE A + F +M  R +
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNIMIWGFFLSGKVETAXRFFEDMKSR-D 180

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
             P+ V+ Y T +    R K+++EA K+   MKG N  PT+   +  +   V ++    A
Sbjct: 181 ITPD-VITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTHTTLIKGYVAVDRVDDA 239

Query: 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
           ++L + M  F G  P+++TY+     L   +++ E      EM+     PT
Sbjct: 240 LRLVEEMKGF-GIKPNAITYSTXLPGLCNAEKMSEARSXLKEMVDKYIAPT 289



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 11/226 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
            L+  KK +  D D + ++++ + K G V+E+ K F +M    VER       + +Y+  
Sbjct: 68  LLDMPKKGLQWDEDLWVLMIDSYGKAGIVQESVKLFHKMEELGVER------TIKSYDVL 121

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
              ++R  +   A ++   M  E   PT   F+  +           A + ++ M     
Sbjct: 122 FKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNIMIWGFFLSGKVETAXRFFEDMKS-RD 180

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +     + K++ E EK+F EM     +PT +   T I   +  D  + A+
Sbjct: 181 ITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTHTTLIKGYVAVDRVDDAL 240

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            +   +   GI P   + +  L GL N  ++S+ R   +EM+++ I
Sbjct: 241 RLVEEMKGFGIKPNAITYSTXLPGLCNAEKMSEARSXLKEMVDKYI 286


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 164/365 (44%), Gaps = 17/365 (4%)

Query: 59  ILAHASSDDIESALAC------TGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQR 110
           IL H    D++SA          G+ P   + + VL   Y         F    R  G+ 
Sbjct: 475 ILGHCQQGDMDSANGVFVEMLEKGLKPNL-ITYSVLMDGYFKKGDTEYAFGLYDRMRGEN 533

Query: 111 LSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV 167
           ++P  +  N++++ L K GR  +  + ++ + ++G + +  T+  I D +   G  + A+
Sbjct: 534 IAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSAL 593

Query: 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEG 226
             +  M   GV  +V    +L++  C+  N    AL+ ++ +K K ++ D   +  L++G
Sbjct: 594 AVYTEMCKIGVSPNVFTYTNLINGFCKSNNM-DLALKVMDEMKNKGIELDVTVYCALIDG 652

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + ++G++  A++   E+ E    +P  V+ Y + +    + + ++ AL   + M  E   
Sbjct: 653 FCRKGDMVNASQLLSELQE-VGLSPNKVV-YSSMISGFRKLQNMEAALHLHKRMINEGIP 710

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
             L+ ++  +  L+K      A +L+  M+   G  PD +TY+++   L    ++   +K
Sbjct: 711 CDLQIYTTLISGLLKEGKLLFASELYAEMLA-KGIMPDLITYSVLIHGLCNKGQLENAQK 769

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
              +M +    PT     T IT        + A  + N +L+ G++P + + + L+ G  
Sbjct: 770 ILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKV 829

Query: 407 NLGRL 411
             G L
Sbjct: 830 KDGNL 834



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 142/321 (44%), Gaps = 14/321 (4%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G R S  ++N M+    + G  +        M E G+  +L T++ + D Y   G  + 
Sbjct: 462 KGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEY 521

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFA 221
           A   +D M    +       N +++ +C+      R  E  +R+KK+V     P   ++ 
Sbjct: 522 AFGLYDRMRGENIAPSDFTCNIIINGLCK----AGRTSESQDRLKKLVQEGFIPTCMTYN 577

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            +++G+ KEG+V  A   + EM  +   +P +V  Y   +    +   +D ALK +  MK
Sbjct: 578 CIIDGFVKEGSVNSALAVYTEMC-KIGVSP-NVFTYTNLINGFCKSNNMDLALKVMDEMK 635

Query: 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341
            +     +  +   +D   +  D  +A QL   +    G  P+ + Y+ +     K + +
Sbjct: 636 NKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEV-GLSPNKVVYSSMISGFRKLQNM 694

Query: 342 HEVEKFFHEMIKNEWQPTPLNC-ATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400
            E     H+ + NE  P  L    T I+ LL   +   A E++  +L  GI+P   + + 
Sbjct: 695 -EAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSV 753

Query: 401 LLVGLRNLGRLSDVRRFAEEM 421
           L+ GL N G+L + ++  E+M
Sbjct: 754 LIHGLCNKGQLENAQKILEDM 774



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 121/286 (42%), Gaps = 7/286 (2%)

Query: 143 GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202
           G+ ++ T+ S+    C  GK  EA   ++ M   GV   VV+ N+++   C+Q +  S  
Sbjct: 429 GIANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSAN 488

Query: 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
             F+  ++K + P+  ++++L++G+ K+G+ E A   +  M  R E            + 
Sbjct: 489 GVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRM--RGENIAPSDFTCNIIIN 546

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
            L +  +  E+   L+ +  E   PT   ++  +D  VK      A+ ++  M    G  
Sbjct: 547 GLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKI-GVS 605

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW--QPTPLNCATAITMLLDADEPEIAI 380
           P+  TY  +     K+  +    K   EM KN+       + CA         D    A 
Sbjct: 606 PNVFTYTNLINGFCKSNNMDLALKVMDEM-KNKGIELDVTVYCALIDGFCRKGDMVN-AS 663

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
           ++ + + E G+ P +   + ++ G R L  +       + M+N  I
Sbjct: 664 QLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGI 709



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 126/305 (41%), Gaps = 10/305 (3%)

Query: 122 VLGKNGRFEQMWNAVRVMKE----DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177
           V+G   +  +M  AV+V  E       +++    ++   YC  G  D A+  FD M+ +G
Sbjct: 300 VIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENG 359

Query: 178 VEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEA 236
           +  + V    ++   C+  N   +A E  N++K K + P   +   L+ G+ K  + EEA
Sbjct: 360 ICPNNVTYAVIIEWCCKNGNM-DKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEA 418

Query: 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
           +K F E V        +V  Y + L  L +  ++ EA      M  +   P++  ++N +
Sbjct: 419 SKLFDEAV---ACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMI 475

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
               +  D   A  ++ + M+  G  P+ +TY+++ +   K          +  M     
Sbjct: 476 LGHCQQGDMDSANGVF-VEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENI 534

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
            P+   C   I  L  A     + +    +++ G +P   + N ++ G    G ++    
Sbjct: 535 APSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALA 594

Query: 417 FAEEM 421
              EM
Sbjct: 595 VYTEM 599



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 84/398 (21%), Positives = 162/398 (40%), Gaps = 73/398 (18%)

Query: 93  DSPSSAVDFFRWAG--RGQRLSPYAWNLMVDVLGKN----GRFEQMWN------------ 134
           + P SA+ +F WA   RG   S  A  +++ +L K+    G+   + N            
Sbjct: 76  NDPQSALSYFTWASQKRGLIKSVDALCVLLHILTKSTETCGKARNLLNRFASDDWGPVPS 135

Query: 135 --AVRVMKEDGVLSLPTFASIFD----SYCGAGKYDEAVMSFDVMSMHGVEQDVV----A 184
               R+++    L   + + +F+    SY    + ++AV  F+ +    +E+D+V     
Sbjct: 136 VVVARLIESSRRLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSL----IEKDIVPCLTV 191

Query: 185 VNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243
           +N  LS + +  N    A +  N++  K V  D  + ++++    +EG +EEA   F E 
Sbjct: 192 MNIFLSELVKN-NMIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREA 250

Query: 244 VER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
             +  E +     AY   +  + +      AL  LR M+ +   P    F+  + + +K 
Sbjct: 251 KNKGVELDAR---AYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQ 307

Query: 303 NDSTHAVQLWDIM----------------------------------MVFHGAFPDSLTY 328
                AV++   M                                  M  +G  P+++TY
Sbjct: 308 GKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTY 367

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388
            +I E   KN  + +  + +++M   +  PT  N  + I   L A  PE A ++++  + 
Sbjct: 368 AVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVA 427

Query: 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426
            GI  +  + N LL  L   G++S+     E+M+ + +
Sbjct: 428 CGIANV-FTYNSLLSWLCKEGKMSEACSIWEKMVRKGV 464



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 124/311 (39%), Gaps = 49/311 (15%)

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
           EA   ++ M+  GV+ D   ++ ++ A  R+         F     K V+ D  +++I++
Sbjct: 207 EARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVI 266

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE- 283
           E   K+ +   A     EM ++  W P  V+      + + +GK + EA+K    +KGE 
Sbjct: 267 EAVCKKPDSVAALGLLREMRDK-GWVPHEVIFTRVIGVCMKQGKML-EAVK----VKGEM 320

Query: 284 -NCFPTLKFF--SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
            +C   +     +  +    K  D   A++L+D  M  +G  P+++TY +I E   KN  
Sbjct: 321 LSCGKPMNVVVATTLMKGYCKQGDLDSALELFD-KMNENGICPNNVTYAVIIEWCCKNGN 379

Query: 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA--------------------- 379
           + +  + +++M   +  PT  N  + I   L A  PE A                     
Sbjct: 380 MDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIANVFTYNSL 439

Query: 380 -------------IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR-- 424
                          IW  ++  G+ P   S N +++G    G +        EML +  
Sbjct: 440 LSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGL 499

Query: 425 --RILIYEVTM 433
              ++ Y V M
Sbjct: 500 KPNLITYSVLM 510


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 150/336 (44%), Gaps = 9/336 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           WN M+ V GK G  + +   +  MK  GV LS  T+ ++  +Y   G    A   +D M 
Sbjct: 338 WNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMI 397

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             G    +   N+LL+ + RQ + ++        +K    P+  S+++LL+ + K GN  
Sbjct: 398 SSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAA 457

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
                  E+     + P  V+   T +I   + ++++   K  + +K +   P L  F++
Sbjct: 458 GIESIEKEVYVGTIF-PSWVI-LRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNS 515

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            L +  K    + A +++D +    G  PD +TYN + +   K+    E EK   ++  +
Sbjct: 516 MLAMYAKNGLYSKATEMFDSIKQ-SGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSS 574

Query: 355 EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
           + +P  ++  T I         + A  I + ++ +G+ P   + + L+ G  +L   ++ 
Sbjct: 575 QVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEA 634

Query: 415 RRFAEEMLNRRILIYEVTMHKLKKAF-----YNESR 445
           R     M++  +   E+T  ++  ++     Y+E+R
Sbjct: 635 REVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAR 670



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 133/319 (41%), Gaps = 7/319 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGK-YDE 165
           G RL   A+  ++  L + GR+E+       ++  GV+ ++ T+  + D Y   G+ +  
Sbjct: 84  GSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPR 143

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILL 224
            V   + M   GVE D    +++++A C ++    +A+ F   +K     P   ++  LL
Sbjct: 144 IVALLEEMRAAGVEPDDFTASTVIAA-CGRDGLLDQAVAFFEDLKARGHVPCVVTYNALL 202

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           + + K GN  EA +   EM E     P+ V  Y     T  R    +EA K L  M  + 
Sbjct: 203 QVFGKAGNYTEALRVLKEM-EDSGCQPDAV-TYNELAGTYARAGFFEEAAKCLDTMTSKG 260

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P    ++  +     +     A+ L+D M   +G  P+  TYN+IF  L K  R   +
Sbjct: 261 LLPNTFTYNTVMTAYANVGRVDEALALFDRMKK-NGYVPNVNTYNLIFGMLGKKSRFTAM 319

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            +   EM ++   P  +   T + +       +    + N +   G+     + N L+  
Sbjct: 320 LEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISA 379

Query: 405 LRNLGRLSDVRRFAEEMLN 423
               G  +   +  +EM++
Sbjct: 380 YGRCGSRTYAFKMYDEMIS 398



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 108/264 (40%), Gaps = 7/264 (2%)

Query: 98  AVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           AV FF     RG       +N ++ V GK G + +    ++ M++ G      T+  +  
Sbjct: 179 AVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAG 238

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVD 214
           +Y  AG ++EA    D M+  G+  +    N++++A      +   AL   +R+KK    
Sbjct: 239 TYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYA-NVGRVDEALALFDRMKKNGYV 297

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+ +++ ++     K+       +   EM  R    P  V  + T L    +    D   
Sbjct: 298 PNVNTYNLIFGMLGKKSRFTAMLEMLEEM-SRSGCTPNRV-TWNTMLAVCGKRGMEDYVT 355

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           + L  MK      +   ++  +    +    T+A +++D  M+  G  P   TYN +   
Sbjct: 356 RVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYD-EMISSGFTPCLTTYNALLNV 414

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQP 358
           L +       +    +M+KN ++P
Sbjct: 415 LSRQGDWSTAQSIVSKMLKNGFKP 438



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/327 (18%), Positives = 120/327 (36%), Gaps = 41/327 (12%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK--EDGVLSLPTFASIFD 155
           A+   RWA         A  ++V  LG+ G+ + + + +  M       L +  + ++  
Sbjct: 38  ALALLRWASDEGAADAAALEMVVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLH 97

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
           +   AG+Y+ A+  F  +   GV   +V  N +L    R      R +  L  ++   V+
Sbjct: 98  ALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVE 157

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           PD  + + ++    ++G +++A   F ++  R   +   V+ Y   L    +     EAL
Sbjct: 158 PDDFTASTVIAACGRDGLLDQAVAFFEDLKAR--GHVPCVVTYNALLQVFGKAGNYTEAL 215

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           + L+ M+   C P                                    D++TYN +   
Sbjct: 216 RVLKEMEDSGCQP------------------------------------DAVTYNELAGT 239

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
             +     E  K    M      P      T +T   +    + A+ +++ + +NG +P 
Sbjct: 240 YARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPN 299

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEM 421
             + N +   L    R + +    EEM
Sbjct: 300 VNTYNLIFGMLGKKSRFTAMLEMLEEM 326


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 147/331 (44%), Gaps = 12/331 (3%)

Query: 115 AWNLMVDVLGKNGRF---EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171
            +N ++  L K G     E++ N  +V+K+    +L TF       C  G    A+   D
Sbjct: 218 TFNKLLHTLCKKGEVQESERLLN--KVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLD 275

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKE 230
            +   G+  DVV  N+L+  +C+  N    A ++L++ V   ++PDG ++  L++G+ K 
Sbjct: 276 SVIREGLTPDVVTYNTLICGLCKNSN-VVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKM 334

Query: 231 GNVEEANKTF-GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           G ++ A K   G + + F   P+    Y + +  L +  ++D AL       G+   PT+
Sbjct: 335 GMLQNAEKILQGAICKGFV--PDE-FTYCSLINGLCQNDEIDRALALFNAALGKGLKPTV 391

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             ++  +  L +      A+Q+ +  M  +G   D  TYN++   L K   V +     +
Sbjct: 392 ILYNMLIKGLCQEGLILQALQMMN-EMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMN 450

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           + I   + P      T I       + E  I+I N +  +G+ P   + N +L GL    
Sbjct: 451 DAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAV 510

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           +  D+    E M+ +  +  ++T + L ++ 
Sbjct: 511 KNEDLMETFETMVEKGCVPNKITYNILTESL 541



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 135/312 (43%), Gaps = 6/312 (1%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S  ++N ++++L ++G F+Q       MK  G++  + TF     S+C   +   A+   
Sbjct: 110 SVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLL 169

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEK 229
           + M   G + + VA  ++++    +EN    A E  N + +I + PD  +F  LL    K
Sbjct: 170 NNMVSQGCQLNAVAYCTVVAGF-YEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCK 228

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           +G V+E+ +   +++++      ++  +  F+  L R   +  A+  L  +  E   P +
Sbjct: 229 KGEVQESERLLNKVLKK--GMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDV 286

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             ++  +  L K N +    + +   +V  G  PD  TYN + +   K   +   EK   
Sbjct: 287 VTYNTLICGLCK-NSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQ 345

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
             I   + P      + I  L   DE + A+ ++N  L  G+ P     N L+ GL   G
Sbjct: 346 GAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEG 405

Query: 410 RLSDVRRFAEEM 421
            +    +   EM
Sbjct: 406 LILQALQMMNEM 417



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 146/393 (37%), Gaps = 75/393 (19%)

Query: 57  CEILAHASSDDIESALACTGIIPTP----DLVHEVLQLSYDSPSSAVDFFRWA-GRGQRL 111
           C++    +++ I     C G +P       L++ + Q   D    A+  F  A G+G + 
Sbjct: 332 CKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQ--NDEIDRALALFNAALGKGLKP 389

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS------------------------- 146
           +   +N+++  L + G   Q    +  M E+G  S                         
Sbjct: 390 TVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLM 449

Query: 147 --------LP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195
                   +P   TF ++ D YC   K +  +   + M  HGV  DV+  NS+L+ + + 
Sbjct: 450 NDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKA 509

Query: 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA--------NK-------TF 240
                    F   V+K   P+  ++ IL E   K G V EA        NK       +F
Sbjct: 510 VKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSF 569

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
             ++  F  N +   AY+ F       +++ E  K        N    +  F+  LD+  
Sbjct: 570 ATIISGFANNGDLKGAYQLF-------RRMGEQYKVSHTTATYNIM--INAFAEKLDL-- 618

Query: 301 KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
                 H  +   + M   G  PD+ TY ++ +            KF  EMI+  + P+ 
Sbjct: 619 ------HMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSL 672

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILP 393
                 I  L        A++I ++++ NGI+P
Sbjct: 673 TTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVP 705



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 111/277 (40%), Gaps = 9/277 (3%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ ++ D YC  G    A          G   D     SL++ +C Q ++  RAL   N 
Sbjct: 323 TYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLC-QNDEIDRALALFNA 381

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            + K + P    + +L++G  +EG + +A +   EM E        +  Y   +  L + 
Sbjct: 382 ALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSEN--GCSSDIWTYNLVINGLCKM 439

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
             V +A   +     +   P +  F+  +D   K       +Q+ + M   HG  PD +T
Sbjct: 440 GCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWS-HGVTPDVIT 498

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN +   L K  +  ++ + F  M++    P  +        L  A +   A+++ + IL
Sbjct: 499 YNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEIL 558

Query: 388 ENGILPLEASANELLVGLRNLGRLSDV----RRFAEE 420
             GI P   S   ++ G  N G L       RR  E+
Sbjct: 559 NKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQ 595



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 117/272 (43%), Gaps = 17/272 (6%)

Query: 189 LSAICRQENQTSRALEFLNRVKKIVDPDG-----DSFAILLEGWEKEGNVEEANKTFGEM 243
           ++A+ +Q+    +ALE  N+VK+    DG      ++  +++     GN         E 
Sbjct: 10  VAAVLKQQKDPLKALEMFNKVKR---EDGFKHSLLTYKCIIQKLGFHGNFVAMENVLAE- 65

Query: 244 VERFEWNPEHVLA-YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302
             R + +   +   Y   + +  R  +V EA+     M   NC P++  ++  ++ILV+ 
Sbjct: 66  -TRMDIDNSLLEGVYIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVES 124

Query: 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362
                A +++ + M   G  PD  T+ +  +   + KR H   +  + M+    Q   + 
Sbjct: 125 GYFKQAHKVF-LRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVA 183

Query: 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
             T +    + +    A E++N +L  GI P  ++ N+LL  L   G + +  R   ++L
Sbjct: 184 YCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVL 243

Query: 423 NR----RILIYEVTMHKL-KKAFYNESRSMRD 449
            +     +  + + +  L +K   + + SM D
Sbjct: 244 KKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLD 275


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 109/474 (22%), Positives = 190/474 (40%), Gaps = 54/474 (11%)

Query: 17  IPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIIC---EILAHA---SSDD--I 68
           +P S S  T+  S    R TR     H   P  +++AR      E L HA   +SDD  I
Sbjct: 77  LPPSKSELTADFS--GRRSTRFVSKMHFGRPKTAAAARHTSTAEEALRHAIRFASDDKGI 134

Query: 69  ESALAC--TGIIPTPDLVHEVLQLSYDSP-SSAVDFFRWAGRGQRLSPYAWNL---MVDV 122
           +S L    + +  + D    + +L      + A+  F +A R ++       L   M+ +
Sbjct: 135 DSVLLNFESRLCGSDDYTFLLRELGNRGEWAKAIRCFEFAVRREQRRNEQGKLASAMISI 194

Query: 123 LGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181
           LG+ G+ E   N       +G   ++  F+++  +Y  +G  DEA+  F+ M   G++ +
Sbjct: 195 LGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPN 254

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240
           +V  N+++ A  +     +RA E  +  ++  V PD  +F  LL    + G  E A   F
Sbjct: 255 LVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLF 314

Query: 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
            EM+ R     + +  Y T L  + +G Q+D A + +  M  ++  P +  +S  +D   
Sbjct: 315 SEMLYR--GIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYA 372

Query: 301 KLNDSTHAVQLWDIM----------------------------------MVFHGAFPDSL 326
           K      A+ L++ M                                  M   G   D++
Sbjct: 373 KAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAV 432

Query: 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386
           TYN +     K  +  EV++ F EM      P  L  +T I +       + A+E++   
Sbjct: 433 TYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREF 492

Query: 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
            + G+       + L+  L   G +     F +EM    I    VT + +  AF
Sbjct: 493 KKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAF 546



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 68/129 (52%), Gaps = 3/129 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G +     +N ++   GK G++E++      MK + +  +L T++++ D Y   G Y EA
Sbjct: 426 GIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEA 485

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLE 225
           +  F      G++ DVV  ++L+ A+C+       A+ FL+ + K+ + P+  ++  +++
Sbjct: 486 MEVFREFKKAGLKADVVLYSALIDALCKN-GLVESAVSFLDEMTKEGIRPNVVTYNSIID 544

Query: 226 GWEKEGNVE 234
            + + G+ E
Sbjct: 545 AFGRSGSAE 553


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 132/315 (41%), Gaps = 19/315 (6%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           +++ +    C  G+ +EA    D M   G +        L+ A+C       +A    + 
Sbjct: 268 SYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALC-DRGLIDKAFNLFDE 326

Query: 209 -VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
            + +   P+  ++ +L++G  ++G +EEAN    +MV+   +    V+ Y   +    + 
Sbjct: 327 MIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIF--PSVITYNALINGYCKD 384

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
            +V  A + L VM+   C P ++ F+  ++ L ++     AV L    M+ +G  PD ++
Sbjct: 385 GRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLK-RMLDNGLSPDIVS 443

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           YN++ + L +   ++   K    M   + +P  L     I       + ++A      +L
Sbjct: 444 YNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLML 503

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM 447
             GI   E +   L+ G+  +G+  D     E ++  RIL    T H           S+
Sbjct: 504 RKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRIL---TTPH-----------SL 549

Query: 448 RDIFDSLERRCKTSQ 462
             I D L + CK  +
Sbjct: 550 NVILDMLSKGCKVKE 564



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 149/342 (43%), Gaps = 8/342 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG + + + + +++D L ++G+ E+     R M +D +  S+ T+ ++ + YC  G+   
Sbjct: 330 RGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVP 389

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILL 224
           A     VM     + +V   N L+  +CR   +  +A+  L R +   + PD  S+ +L+
Sbjct: 390 AFELLTVMEKRACKPNVRTFNELMEGLCRV-GKPYKAVHLLKRMLDNGLSPDIVSYNVLI 448

Query: 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           +G  +EG++  A K    M   F+  P+  L +   +    +  + D A  FL +M  + 
Sbjct: 449 DGLCREGHMNTAYKLLSSM-NCFDIEPD-CLTFTAIINAFCKQGKADVASAFLGLMLRKG 506

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH-GAFPDSLTYNMIFECLIKNKRVHE 343
                   +  +D + K+  +  A+ + + ++       P SL  N+I + L K  +V E
Sbjct: 507 ISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSL--NVILDMLSKGCKVKE 564

Query: 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLV 403
                 ++ K    P+ +   T +  L+ + +   +  I   +  +G LP       ++ 
Sbjct: 565 ELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIIN 624

Query: 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           GL   GR+ +  +    M +  +    VT   + K + N  +
Sbjct: 625 GLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGK 666



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 130/314 (41%), Gaps = 37/314 (11%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
           S   +N +++   K+GR    +  + VM++     ++ TF  + +  C  GK  +AV   
Sbjct: 370 SVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLL 429

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEK 229
             M  +G+  D+V+ N L+  +CR E   + A + L+ +    ++PD  +F  ++  + K
Sbjct: 430 KRMLDNGLSPDIVSYNVLIDGLCR-EGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCK 488

Query: 230 EGNVEEANKTFGEM------------------VERFEWNPEHVLAYETF----------- 260
           +G  + A+   G M                  V +     + +   ET            
Sbjct: 489 QGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHS 548

Query: 261 ----LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316
               L  L +G +V E L  L  +      P++  ++  +D L++  D T + ++ ++M 
Sbjct: 549 LNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMK 608

Query: 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376
           +  G  P+   Y +I   L +  RV E EK    M  +   P  +     +   ++  + 
Sbjct: 609 L-SGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKL 667

Query: 377 EIAIEIWNYILENG 390
           + A+E    ++E G
Sbjct: 668 DRALETVRAMVERG 681



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/155 (20%), Positives = 70/155 (45%), Gaps = 3/155 (1%)

Query: 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAI 367
           A++++D+M       P+S++Y+++   L +  R+ E      +M +   QP+       I
Sbjct: 249 ALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLI 308

Query: 368 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427
             L D    + A  +++ ++  G  P   +   L+ GL   G++ +      +M+  RI 
Sbjct: 309 KALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIF 368

Query: 428 IYEVTMHKLKKAFYNESRSMR--DIFDSLERR-CK 459
              +T + L   +  + R +   ++   +E+R CK
Sbjct: 369 PSVITYNALINGYCKDGRVVPAFELLTVMEKRACK 403


>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
          Length = 642

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 140/316 (44%), Gaps = 7/316 (2%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           R+ P    +N M+    K G+ ++    +R M+  G      T+ ++  +      +   
Sbjct: 234 RIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSC 293

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           V  +  M   G++    A + ++  +C++         F N ++K   P+   + +L++G
Sbjct: 294 VALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDG 353

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           + K G+VE+A +    M++   + P+ V+ Y   +  L +  +V+EAL +    + +   
Sbjct: 354 YAKSGSVEDAIRLLHRMIDE-GFKPD-VVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLA 411

Query: 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
               F+S+ +D L K      A +L++  M   G   DS  YN + +   K+++V E   
Sbjct: 412 INSMFYSSLIDGLGKAGRVDEAERLFE-EMSEKGCTRDSYCYNALIDAFTKHRKVDEAIA 470

Query: 347 FFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
            F  M + E    T       ++ +      E A+++W+ +++ GI P  A    L  GL
Sbjct: 471 LFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGL 530

Query: 406 RNLGRLSDVRRFAEEM 421
              G+++   +  +E+
Sbjct: 531 CLSGKVARACKILDEL 546



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 134/297 (45%), Gaps = 28/297 (9%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           +G ++ P+A++L++  L K G+  + +     M   G   ++  +  + D Y  +G  ++
Sbjct: 303 KGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVED 362

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS-----F 220
           A+     M   G + DVV  + +++ +C+   +   AL++ +  +     DG +     +
Sbjct: 363 AIRLLHRMIDEGFKPDVVTYSVVVNGLCKN-GRVEEALDYFHTCR----FDGLAINSMFY 417

Query: 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK-FLRV 279
           + L++G  K G V+EA + F EM E+      +   Y   +    + ++VDEA+  F R+
Sbjct: 418 SSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSY--CYNALIDAFTKHRKVDEAIALFKRM 475

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
            + E C  T+  ++  L  + K + +  A++LWD MM+  G  P +  +  +   L  + 
Sbjct: 476 EEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWD-MMIDKGITPTAACFRALSTGLCLSG 534

Query: 340 RVHEVEKFFHEMIKNEWQPTPLN------CATAITMLLDADEPEIAIEIWNYILENG 390
           +V    K   E+        P+       C   I  L  A   + A ++ + I E G
Sbjct: 535 KVARACKILDEL-------APMGVILDAACEDMINTLCKAGRIKEACKLADGITERG 584



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 109/237 (45%), Gaps = 6/237 (2%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A N ++   GK G  E++    R MKE+G+  +L T+  + +    A   D A   F+VM
Sbjct: 171 AANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVM 230

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGN 232
               ++ D+V  N+++   C+   QT +A+E L  ++ +  + D  ++  +++    + +
Sbjct: 231 ESGRIKPDIVTYNTMIKGYCKA-GQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSD 289

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
                  + EM E+    P H  A+   +  L +  +++E       M  +   P +  +
Sbjct: 290 FGSCVALYQEMDEKGIQVPPH--AFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIY 347

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
           +  +D   K      A++L    M+  G  PD +TY+++   L KN RV E   +FH
Sbjct: 348 TVLIDGYAKSGSVEDAIRLLH-RMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFH 403



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 8/170 (4%)

Query: 84  VHEVLQLSYDSPSSAVDFFRWAGR----GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM 139
           ++ VL   Y    S  D  R   R    G +     ++++V+ L KNGR E+  +     
Sbjct: 346 IYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTC 405

Query: 140 KEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198
           + DG+ ++   ++S+ D    AG+ DEA   F+ MS  G  +D    N+L+ A  +   +
Sbjct: 406 RFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHR-K 464

Query: 199 TSRALEFLNRV--KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
              A+    R+  ++  D    ++ ILL G  KE   EEA K +  M+++
Sbjct: 465 VDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDK 514



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 14/186 (7%)

Query: 98  AVDFFRWAG-RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFD 155
           A+D+F      G  ++   ++ ++D LGK GR ++       M E G       + ++ D
Sbjct: 398 ALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALID 457

Query: 156 SYCGAGKYDEAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIV 213
           ++    K DEA+  F  M    G +Q V     LLS + + E++   AL+  +  + K +
Sbjct: 458 AFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFK-EHRNEEALKLWDMMIDKGI 516

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL---AYETFLITLIRGKQV 270
            P    F  L  G    G V  A K   E+       P  V+   A E  + TL +  ++
Sbjct: 517 TPTAACFRALSTGLCLSGKVARACKILDELA------PMGVILDAACEDMINTLCKAGRI 570

Query: 271 DEALKF 276
            EA K 
Sbjct: 571 KEACKL 576


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 150/351 (42%), Gaps = 7/351 (1%)

Query: 98  AVDFFRW-AGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFD 155
           A D F   A +G   S      ++  L K    ++ +     +   G++  +  F+++ +
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVD 214
           ++C   + D+A+  F  M   GV  +VV  N+++  +C+   +   A  F  + VK+ V 
Sbjct: 265 AFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKS-GRLDEAYRFKEKMVKEKVS 323

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P   ++++ + G  K   ++EAN    EM E   + P  V+ Y T +    +   + EAL
Sbjct: 324 PSLITYSVFINGLIKLEKIDEANCVLKEMSE-LGFVPNEVV-YNTLIDGYCKMGNISEAL 381

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
           K    M  +   P     ++ +    K +    A  + +  M+  G   +  +++M+   
Sbjct: 382 KIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLE-EMIGRGLPINQGSFSMVINW 440

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394
           L    R      F  EM+    +P      T ++ L  A +   A+E+W  +L  G +P 
Sbjct: 441 LCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPN 500

Query: 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
             ++N L+ GL   G + +  +   +ML R ++   +T + L      E +
Sbjct: 501 IVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGK 551



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 135/337 (40%), Gaps = 8/337 (2%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAG 161
           R  G+G   +    N ++  L K G  ++    +R M E G V    T+ ++    C  G
Sbjct: 491 RLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEG 550

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSF 220
           K  E     + M   G++ D+   N LL  +C  + +   A    +  KK    P+  ++
Sbjct: 551 KVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNAD-KIDEASRLWHECKKNGYVPNVYTY 609

Query: 221 AILLEGWEKEGNVEEANKTFGEMV-ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279
            ++++G+ K   VEE      E+V ++ E N    + Y + +        ++ A +    
Sbjct: 610 GVMIDGYCKANKVEEGENLLNELVSKKLELNS---VVYNSLIRAYCINGNMNAAFRLRDD 666

Query: 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339
           MK      +   +S+ +  L  +     A  L D M    G  P+ + Y  I     K  
Sbjct: 667 MKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRK-EGLLPNVVCYTTIIGGYSKLG 725

Query: 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399
           ++++V     EM  +   P        I       + + A ++ N + E GILP   + N
Sbjct: 726 QMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYN 785

Query: 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
               GL   G++ +  +  +EM +  + + E+T   L
Sbjct: 786 AFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTL 822



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 131/308 (42%), Gaps = 6/308 (1%)

Query: 115 AWNLMVDVLGKNGRFEQMWN-AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
            +N ++  L K+GR ++ +    +++KE    SL T++   +      K DEA      M
Sbjct: 293 TYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEM 352

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFL-NRVKKIVDPDGDSFAILLEGWEKEGN 232
           S  G   + V  N+L+   C+  N  S AL+   + + K + P+  +   L++G+ K   
Sbjct: 353 SELGFVPNEVVYNTLIDGYCKMGN-ISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQ 411

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           + +A     EM+ R    P +  ++   +  L    +   AL F+R M   N  P     
Sbjct: 412 IGQAENVLEEMIGR--GLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLL 469

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  +  L K      AV+LW   ++  G  P+ +T N +   L K   + E  K   +M+
Sbjct: 470 TTLVSGLCKAGKQGEAVELW-CRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDML 528

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
           +       +   T I+      + +   E+   +++ GI P   + N LL GL N  ++ 
Sbjct: 529 ERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKID 588

Query: 413 DVRRFAEE 420
           +  R   E
Sbjct: 589 EASRLWHE 596



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/370 (20%), Positives = 143/370 (38%), Gaps = 45/370 (12%)

Query: 109 QRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDE 165
           +++SP    +++ ++ L K  + ++    ++ M E G V +   + ++ D YC  G   E
Sbjct: 320 EKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISE 379

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQE-------------------NQTS------ 200
           A+   D M   G+  + V +NSL+   C+ +                   NQ S      
Sbjct: 380 ALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVIN 439

Query: 201 ---------RALEFLNR-VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN 250
                     AL F+   + + + P+      L+ G  K G   EA + +  ++ +  + 
Sbjct: 440 WLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGK-GFV 498

Query: 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           P +++     +  L +   + E LK LR M           ++  +    K        +
Sbjct: 499 P-NIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFE 557

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           L +  MV  G  PD  T+N++   L    ++ E  + +HE  KN + P        I   
Sbjct: 558 LKE-EMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGY 616

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI-- 428
             A++ E    + N ++   +       N L+      G ++   R  ++M +R +L+  
Sbjct: 617 CKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSC 676

Query: 429 --YEVTMHKL 436
             Y   MH L
Sbjct: 677 ATYSSLMHGL 686


>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera]
 gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
          Length = 878

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 155/378 (41%), Gaps = 68/378 (17%)

Query: 99  VDFFRWAGR-----GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP----T 149
           VD F W  +     G     Y  NL++  L  +GRFE   +A  V  + GV        +
Sbjct: 132 VDSFSWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFE---DAREVFDKMGVKGCRPNEFS 188

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F  +   YC AG    A+   D M   GV+ + V  N+L+S+ CR E +   A   + R+
Sbjct: 189 FGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVIYNTLISSFCR-EGRNEEAERLVERM 247

Query: 210 K----------------------KIVD------------------PDGDSFAILLEGWEK 229
           +                      KI++                  P+  +F ++LEG+ K
Sbjct: 248 REDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCK 307

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
           EG +EEA KT  E ++R   N   + +Y  +L+ L+R  ++ EA   L+ M  +   P +
Sbjct: 308 EGMLEEA-KTLVESMKR-NGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNI 365

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             F+  +D L K N      ++   +M+  G  PD++TY+ +        +V +     H
Sbjct: 366 YSFNTVMDGLCK-NGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILH 424

Query: 350 EMIKNEWQPTPLNCATAITMLLDAD---EPEIAIEIWN---YILENGILPLEASANELLV 403
           EM++    P    C   +  L       E E  ++  N   Y L+N       + N ++ 
Sbjct: 425 EMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDN------VTCNIVID 478

Query: 404 GLRNLGRLSDVRRFAEEM 421
           GL   G+L +     E M
Sbjct: 479 GLCKSGKLDEAVEIVEGM 496



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 151/368 (41%), Gaps = 41/368 (11%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  +   ++N+ +  L +NG+  +   A++ M + G+  ++ +F ++ D  C  G   +A
Sbjct: 325 GNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDA 384

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN----RVKKIVDPDGDSFAI 222
            M   +M   G+  D V  ++LL   C     T + L+  N     +++   P+  +  I
Sbjct: 385 RMIMGLMISSGIGPDTVTYSTLLHGCC----STGKVLKANNILHEMMRRGCSPNTYTCNI 440

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM-- 280
           LL    KEG + EA K   +M ER  ++ ++V      +  L +  ++DEA++ +  M  
Sbjct: 441 LLHSLWKEGRIFEAEKLLQKMNER-SYDLDNVTC-NIVIDGLCKSGKLDEAVEIVEGMWI 498

Query: 281 ---------------------KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH 319
                                 G+ C P L  +S  ++ L K      A + + I MV  
Sbjct: 499 HGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKF-IEMVGK 557

Query: 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379
              PDS+ Y+       K+ ++    +   +M K     +     T  +++L        
Sbjct: 558 SLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKS---LQTYNSLILGLGSKNQI 614

Query: 380 IEIWNYI---LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436
            EI+  +    E GI P   + N ++  L   GR+ D     +EML + I     +   L
Sbjct: 615 FEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGISPNISSFRLL 674

Query: 437 KKAFYNES 444
            KAF   S
Sbjct: 675 IKAFCKAS 682



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 144/379 (37%), Gaps = 71/379 (18%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-----TFASIFDSYCGAGKYDEAVMS 169
            +N  +  L   G+  +     R M+ D  L LP     TF  + + +C  G  +EA   
Sbjct: 258 TFNSRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTL 317

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
            + M  +G   ++ + N  L  + R        L     V K ++P+  SF  +++G  K
Sbjct: 318 VESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCK 377

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
            G + +A    G M+      P+ V  Y T L                       C  T 
Sbjct: 378 NGLISDARMIMGLMISS-GIGPDTV-TYSTLL---------------------HGCCSTG 414

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
           K        ++K N+  H        M+  G  P++ T N++   L K  R+ E EK   
Sbjct: 415 K--------VLKANNILHE-------MMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQ 459

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI----------LENGILPL-EASA 398
           +M +  +    + C   I  L  + + + A+EI   +          L N  + L ++S+
Sbjct: 460 KMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSS 519

Query: 399 NE------------LLVGLRNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKAFYN 442
           N             ++ GL   GRL + R+   EM+ + +    +IY+  +H   K    
Sbjct: 520 NGKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCK-HGK 578

Query: 443 ESRSMRDIFDSLERRCKTS 461
            S + R + D  +R C  S
Sbjct: 579 ISSAFRVLKDMEKRGCNKS 597



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/341 (19%), Positives = 129/341 (37%), Gaps = 28/341 (8%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVM---------------------KEDGVL 145
           R   L     N+++D L K+G+ ++    V  M                       +G  
Sbjct: 464 RSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKK 523

Query: 146 SLP---TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202
            LP   T++ I +  C AG+ DEA   F  M    +  D +  ++ + + C+    +S  
Sbjct: 524 CLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAF 583

Query: 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262
               +  K+  +    ++  L+ G   +  + E      +M E+    P ++  Y   + 
Sbjct: 584 RVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEK-GITP-NICTYNNMIS 641

Query: 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322
            L  G ++ +A   L  M  +   P +  F   +    K +D     ++++I +   G  
Sbjct: 642 CLCEGGRIKDATSLLDEMLQKGISPNISSFRLLIKAFCKASDFGVVKEVFEIALSICGH- 700

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382
                Y+++F  L+    V E ++ F   +   +          I  L   +  E A +I
Sbjct: 701 -KEALYSLMFNELLIGGEVSEAKELFDAALDRCFDLGNFQYNDLIEKLCKDEMLENASDI 759

Query: 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423
            + +++ G     AS   ++ GL   G+  D    AE M++
Sbjct: 760 LHKMIDKGYRFDPASFMPVIDGLGKRGKKHDADELAERMMD 800



 Score = 42.0 bits (97), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 106/253 (41%), Gaps = 15/253 (5%)

Query: 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241
           V   N +L +  R++   S +  + + V   V P+  +  +L+ G    G  E+A + F 
Sbjct: 116 VYLYNMVLESSLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREVFD 175

Query: 242 EMVERFEWNPEHVLAYETFLITLIRGK-QVDEALKFLRVMKGENCF---PTLKFFSNALD 297
           +M        +     E     L+RG  +   +++ L ++ G   F   P    ++  + 
Sbjct: 176 KM------GVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVIYNTLIS 229

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
              +   +  A +L + M    G FPD +T+N     L    ++ E  + F +M  +E  
Sbjct: 230 SFCREGRNEEAERLVERMRE-DGLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEEL 288

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILE----NGILPLEASANELLVGLRNLGRLSD 413
             P    T   ++L+    E  +E    ++E    NG L    S N  L+GL   G+L +
Sbjct: 289 GLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLE 348

Query: 414 VRRFAEEMLNRRI 426
            +   +EM+++ I
Sbjct: 349 AQLALKEMVDKGI 361


>gi|356526063|ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 1 [Glycine max]
 gi|356526065|ref|XP_003531640.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 2 [Glycine max]
          Length = 522

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 119/265 (44%), Gaps = 8/265 (3%)

Query: 98  AVDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIF 154
           A+ F+R   R   +SP  Y  N+++      G  ++ ++ +  M + G+  ++ +F ++ 
Sbjct: 208 ALAFYREIRRRSCVSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMMDMGLSPNVVSFNTLI 267

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-V 213
             YC  G +  A+    +M  +GV+ +VV  N+L++  C+ E +   A    N +K   V
Sbjct: 268 SGYCNKGLFGLALKVKSLMVENGVQPNVVTFNTLINGFCK-ERKLHEANRVFNEMKVANV 326

Query: 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273
           DP   ++  LL G+ + G+ E   + + EM+         +L Y   ++ L +  +  +A
Sbjct: 327 DPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMR--NGLKADILTYNALILGLCKDGKTKKA 384

Query: 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333
             F+R +  EN  P    FS  +      N+S  A  ++   MV  G  P+  T+ M+  
Sbjct: 385 AGFVRELDKENLVPNASTFSALITGQCVRNNSERAFLIYR-SMVRSGCSPNGQTFQMLIS 443

Query: 334 CLIKNKRVHEVEKFFHEMIKNEWQP 358
              KN+      +   +M+     P
Sbjct: 444 AFCKNEDFDGAVQVLRDMLGRLMSP 468



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/274 (19%), Positives = 112/274 (40%), Gaps = 41/274 (14%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209
           F S+F +     K+  A   + +M  HG    V + N+ LS++ R   +   AL F   +
Sbjct: 157 FDSLFKTLAHTNKFRHATHIYTLMKEHGFSPTVQSCNAFLSSLLRLR-RADIALAFYREI 215

Query: 210 KK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           ++   V P+  +  +++  +   G V++      +M++    +P +V+++ T    LI G
Sbjct: 216 RRRSCVSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMMD-MGLSP-NVVSFNT----LISG 269

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
                             +     F  AL +                +MV +G  P+ +T
Sbjct: 270 ------------------YCNKGLFGLALKV--------------KSLMVENGVQPNVVT 297

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           +N +     K +++HE  + F+EM      P+ +   T +       + E+ + ++  ++
Sbjct: 298 FNTLINGFCKERKLHEANRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMM 357

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
            NG+     + N L++GL   G+      F  E+
Sbjct: 358 RNGLKADILTYNALILGLCKDGKTKKAAGFVREL 391


>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 587

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 174/426 (40%), Gaps = 58/426 (13%)

Query: 72  LACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA--WNLMVDVLGKNGRF 129
           L  TGI PTP L+H V      SP      + WA       P +  ++ +++ L K   F
Sbjct: 95  LTQTGIKPTPPLLHAVFDHFASSPKLLHSLYLWALNQPGFKPDSSLFDSVINALAKMKEF 154

Query: 130 EQMWNAV------RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183
           +  W+ V          ++ ++S+ TFA I   Y  AG +  A+ +F+         D V
Sbjct: 155 DDAWSLVLDRIRRDDDDDEKLVSVGTFAIIIRRYARAGMHKAAIRTFEFAKDKKSIVDSV 214

Query: 184 AVNS----LLSAICRQENQTSRALEFLNRVKKIVD----PDGDSFAILLEGWEKEGNVEE 235
           +  S    L+ ++C+ E     A E+L R +K  D    P    + I+L GW +   ++ 
Sbjct: 215 SEMSLFEILIDSLCK-EGSAREASEYLLR-RKETDLGWVPSIRVYNIMLNGWFRARKLKH 272

Query: 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
           A + + EM  + E     V+ Y T +    R ++V++AL+ +  M  E   P    ++  
Sbjct: 273 AERLWEEM--KNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIKPNAIVYNPI 330

Query: 296 LDILVK---------LNDSTHAVQLWDIM-------------------------MVFHGA 321
           +D L +         + +  H +Q+   +                         M+  G 
Sbjct: 331 IDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGDIEGASKILKKMISRGF 390

Query: 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381
            P   TYN  F    +  +V E    + +MI++   P  L     + ML + ++ E+A++
Sbjct: 391 LPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKLELAVQ 450

Query: 382 IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK----LK 437
           +   +   G     A++  L   L  + +L +     E+M+ R I+   +T  K    LK
Sbjct: 451 VSMEMRHKGYDMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGIIPQYLTFQKLNVELK 510

Query: 438 KAFYNE 443
           K   NE
Sbjct: 511 KQGMNE 516


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 142/327 (43%), Gaps = 12/327 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYC 158
           F++   R  + +  A+N M+ +L   G++E++      M  +G       T++++  ++C
Sbjct: 182 FYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFC 241

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDG 217
             G+ D A+   + M  +G++        ++S   + +N    AL     ++ +   PD 
Sbjct: 242 KLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDN-VHGALSLFEEMRYMYCRPDV 300

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++  L+ G  K G ++EA   + EM +R    P+ V+     +  L +  ++D+ LK  
Sbjct: 301 FTYTELIRGLGKAGRIDEAYHFYHEM-QREGCKPDTVVM-NNMINFLGKAGRLDDGLKLF 358

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M   +C P +  ++  +  L +       V  W   M   G  P   TY+++ +   K
Sbjct: 359 EEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCK 418

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             R+ +      EM +  + P P    + I  L  A   ++A E++  + EN      +S
Sbjct: 419 TNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENC---GSSS 475

Query: 398 ANELLVGLRNL---GRLSDVRRFAEEM 421
           A    V +++L   GRL D     +EM
Sbjct: 476 ARVYAVMIKHLGKAGRLDDAINLFDEM 502



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/383 (21%), Positives = 158/383 (41%), Gaps = 47/383 (12%)

Query: 43  HLDAPYISSSARI--ICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY--DSPSSA 98
           H     ++ SA I   C++    S+  + + +   G+ PT  +   ++ L +  D+   A
Sbjct: 225 HCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGA 284

Query: 99  VDFFRWAGRGQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156
           +  F    R     P  + +  ++  LGK GR ++ ++    M+ +G        +   +
Sbjct: 285 LSLFEEM-RYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMIN 343

Query: 157 YCG-AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VD 214
           + G AG+ D+ +  F+ M +     +VV  N+++ A+   +++ S    +  R+K   + 
Sbjct: 344 FLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGIS 403

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P   +++IL++G+ K   +E+A     EM E+    P    AY + +  L + K+ D A 
Sbjct: 404 PSPFTYSILIDGFCKTNRIEKAMMLLEEMDEK--GFPPCPAAYCSLIDALGKAKRYDLAC 461

Query: 275 KFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHAVQLWDIM------------------ 315
           +  + +K ENC  +  + ++  +  L K      A+ L+D M                  
Sbjct: 462 ELFQELK-ENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSG 520

Query: 316 ----------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
                           M  HG  PD  +YN+I   L K    H   +    M  +  +P 
Sbjct: 521 LARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPD 580

Query: 360 PLNCATAITMLLDADEPEIAIEI 382
            ++  T ++ L  A   E A E+
Sbjct: 581 AVSYNTVLSALSHAGMFEEAAEL 603



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 112/285 (39%), Gaps = 43/285 (15%)

Query: 72  LACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW----AGRGQRLSPYAWNLMVDVLGKNG 127
           +  +  IP     + +++  ++S S   + F W     G G   SP+ +++++D   K  
Sbjct: 361 MGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTN 420

Query: 128 RFEQMWNAVRVMKEDGVLSLPT-FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186
           R E+    +  M E G    P  + S+ D+   A +YD A   F  +             
Sbjct: 421 RIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQEL------------- 467

Query: 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246
                   +EN  S +                 +A++++   K G +++A   F EM  +
Sbjct: 468 --------KENCGSSSARV--------------YAVMIKHLGKAGRLDDAINLFDEM-SK 504

Query: 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306
               P +V AY   +  L R   +DEAL  +R M+   C P +  ++  L+ L K     
Sbjct: 505 LGCTP-NVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPH 563

Query: 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
            A+++    M      PD+++YN +   L       E  +   EM
Sbjct: 564 RAMEML-TNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEM 607



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 78/202 (38%), Gaps = 2/202 (0%)

Query: 256 AYETFLITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           AY + +I LI   Q ++  +    M  E +C P    +S  +    KL     A++L + 
Sbjct: 196 AYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNE 255

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
           M   +G  P +  Y MI     K   VH     F EM     +P        I  L  A 
Sbjct: 256 MKE-NGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAG 314

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
             + A   ++ +   G  P     N ++  L   GRL D  +  EEM     +   VT +
Sbjct: 315 RIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYN 374

Query: 435 KLKKAFYNESRSMRDIFDSLER 456
            + KA +     + ++F   ER
Sbjct: 375 TIIKALFESKSRVSEVFSWFER 396



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 66/158 (41%)

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L   K + +A+     +K   C PT + +++ + +L+         +L++ M       P
Sbjct: 169 LGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQP 228

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D++TY+ +     K  R     +  +EM +N  QPT       I++    D    A+ ++
Sbjct: 229 DTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLF 288

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
             +      P   +  EL+ GL   GR+ +   F  EM
Sbjct: 289 EEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEM 326


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 142/327 (43%), Gaps = 12/327 (3%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYC 158
           F++   R  + +  A+N M+ +L   G++E++      M  +G       T++++  ++C
Sbjct: 178 FYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFC 237

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDG 217
             G+ D A+   + M  +G+ Q    + ++L A+  + N    AL     ++ +   PD 
Sbjct: 238 KLGRQDSAIRLLNEMKDNGM-QPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDV 296

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++  L+ G  K G  +EA   F EM  R    P+ V+     +  L +  ++D+A+K  
Sbjct: 297 FTYTELIRGLGKAGRFDEAYNFFHEM-RREGCRPDTVVI-NNMINFLGKAGRLDDAVKLF 354

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M    C P++  ++  +  L +       +  W   M   G  P   TY+++ +   K
Sbjct: 355 EEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCK 414

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             R  +      EM +  + P P    + I  L  A   +IA E++  + EN      +S
Sbjct: 415 TNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENC---GSSS 471

Query: 398 ANELLVGLRNL---GRLSDVRRFAEEM 421
           A    V +++L   GRL D     +EM
Sbjct: 472 ARVYAVMIKHLGKAGRLDDAVNLFDEM 498



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 163/372 (43%), Gaps = 12/372 (3%)

Query: 57  CEILAHASSDDIESALACTGIIPTPDLVHEVLQLSY--DSPSSAVDFFRWAGRGQRLSP- 113
           C++    S+  + + +   G+ PT  +   ++ L +  ++   A+  F    R Q   P 
Sbjct: 237 CKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEM-RHQYCRPD 295

Query: 114 -YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKYDEAVMSFD 171
            + +  ++  LGK GRF++ +N    M+ +G        +   ++ G AG+ D+AV  F+
Sbjct: 296 VFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFE 355

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKE 230
            M        VV  N+++ A+   +++ S    +  R+K   + P   +++IL++G+ K 
Sbjct: 356 EMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKT 415

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PTL 289
              E+A     EM E+    P    AY + +  L + K+ D A +  + +K ENC   + 
Sbjct: 416 NRTEKAMMLLEEMDEK--GFPPCPAAYCSLIDALGKAKRYDIAHELFQELK-ENCGSSSA 472

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
           + ++  +  L K      AV L+D M    G  P+   YN +   L +   + E      
Sbjct: 473 RVYAVMIKHLGKAGRLDDAVNLFDEMNKL-GCTPNVYAYNALMSGLARAGMLDEALTTMR 531

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
            M ++   P   +    +  L     P  A+E+ + + ++ I P   S N +L  + + G
Sbjct: 532 RMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAG 591

Query: 410 RLSDVRRFAEEM 421
              +  +  +EM
Sbjct: 592 LFEEAAKLMKEM 603



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 96/258 (37%), Gaps = 38/258 (14%)

Query: 200 SRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258
           S+A+    ++K +   P   ++  ++     EG  E+ ++ + EM       P+ V  Y 
Sbjct: 172 SKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTV-TYS 230

Query: 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318
             +    +  + D A++ L  MK     PT K ++  + +  KLN+   A+ L++  M  
Sbjct: 231 ALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFE-EMRH 289

Query: 319 HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378
               PD  TY  +   L K  R  E   FFHEM +                         
Sbjct: 290 QYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRRE------------------------ 325

Query: 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438
                      G  P     N ++  L   GRL D  +  EEM   + +   VT + + K
Sbjct: 326 -----------GCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIK 374

Query: 439 AFYNESRSMRDIFDSLER 456
           A +     + +I    ER
Sbjct: 375 ALFESKSRISEISSWFER 392



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 6/193 (3%)

Query: 235 EANKTFGEM---VERFEWNPEHVLA---YETFLITLIRGKQVDEALKFLRVMKGENCFPT 288
           E  + +GEM   ++    NP  V+        +  L   K + +A+     +K   C PT
Sbjct: 130 EVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKVRKCQPT 189

Query: 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFF 348
            + +++ + +L+         +L++ M      FPD++TY+ +     K  R     +  
Sbjct: 190 AQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLL 249

Query: 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408
           +EM  N  QPT       I +    +    A+ ++  +      P   +  EL+ GL   
Sbjct: 250 NEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKA 309

Query: 409 GRLSDVRRFAEEM 421
           GR  +   F  EM
Sbjct: 310 GRFDEAYNFFHEM 322


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 125/288 (43%), Gaps = 4/288 (1%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDE 165
           RG       +N++++   K   + Q    + +M+ +G   +  T+  + D  CG G  D+
Sbjct: 196 RGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDD 255

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+     +  HG +   V  N++L  +C  E            +++   P+  +F +++ 
Sbjct: 256 ALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIY 315

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
              ++G +++A +   +M +       +++ Y   +  L   + VD A+  L  MK   C
Sbjct: 316 SLCRKGLLQQAIQLLEKMSK--HGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGC 373

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P +  ++  L  L        A +L D  M  +G  PD++T+N +   L +   + +  
Sbjct: 374 KPDIVTYNTLLKGLCSAAQWVDAEELMD-NMTQNGCLPDNVTFNTLIGFLCQKGLMVDAI 432

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
           + F +M      P  +  +T I+ L  A + + A+E++N +   G  P
Sbjct: 433 EVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNP 480



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 127/281 (45%), Gaps = 6/281 (2%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           TF  +  S C  G   +A+   + MS HG   ++V  N++++ +C Q N    A+  L++
Sbjct: 309 TFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRN-VDGAMGLLSK 367

Query: 209 VKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267
           +K     PD  ++  LL+G        +A +    M +     P++V  + T +  L + 
Sbjct: 368 MKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCL-PDNV-TFNTLIGFLCQK 425

Query: 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327
             + +A++  + M  + C P    +S  +  L K      A++L++ M   H  F     
Sbjct: 426 GLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEM--GHKGFNPDKI 483

Query: 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387
           Y ++ ECL  +  + E  +   ++  +   P  +     +  L    + E AI+I  Y++
Sbjct: 484 YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMV 543

Query: 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 428
            +G +P + +   L+ GL   G L++ R    ++ +R +L+
Sbjct: 544 SSGCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRDVLV 584



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 145/338 (42%), Gaps = 27/338 (7%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP---TFASIFDSYCGAGKYDEAVMSFD 171
           A+  + D   + GR   + +A RV+   G+   P   T+  +  + C  G+  +A+   D
Sbjct: 137 AYGALTDGYCRAGR---LGDARRVVG--GMPVQPNAYTYNPLIHTLCERGQVRDALSVLD 191

Query: 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKE 230
            M   G   DVV  N LL A C+      +A+E ++ ++ +   P+  ++ +L++G   E
Sbjct: 192 DMLCRGCAPDVVTYNILLEATCKGRGY-RQAMELIDLMRAEGCTPNNVTYNVLMDGMCGE 250

Query: 231 GNVEEANKTFGEMVERFEWNPEH-----VLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+V++A       +E     P H      + Y T L  L   ++  +A + +  M  ENC
Sbjct: 251 GDVDDA-------LELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENC 303

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P    F+  +  L +      A+QL +  M  HG   + +TYN I   L + + V    
Sbjct: 304 PPNEATFNVVIYSLCRKGLLQQAIQLLE-KMSKHGCTANIVTYNAIINGLCEQRNVDGAM 362

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
               +M     +P  +   T +  L  A +   A E+ + + +NG LP   + N L+  L
Sbjct: 363 GLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFL 422

Query: 406 RNLGRLSDVRRFAEEMLNRRI----LIYEVTMHKLKKA 439
              G + D     ++M ++      + Y   +  L KA
Sbjct: 423 CQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKA 460



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 111/244 (45%), Gaps = 11/244 (4%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N +++ L +    +     +  MK  G    + T+ ++    C A ++ +A    D M+
Sbjct: 345 YNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMT 404

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNV 233
            +G   D V  N+L+  +C Q+     A+E   ++  K   P+  +++ ++ G  K   +
Sbjct: 405 QNGCLPDNVTFNTLIGFLC-QKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKL 463

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
           ++A + F EM  +  +NP+ +  Y+     L     ++EA++ +R ++     P    ++
Sbjct: 464 DQALELFNEMGHK-GFNPDKI--YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYN 520

Query: 294 NALDILVKLNDSTHAVQLWDIM--MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
             L  L +   +  A+   DIM  MV  G  PD LTY ++ E L     ++E  +   ++
Sbjct: 521 AILLGLCRNGKTEFAI---DIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKL 577

Query: 352 IKNE 355
              +
Sbjct: 578 CSRD 581


>gi|122236160|sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g13420, mitochondrial; Flags: Precursor
 gi|110738270|dbj|BAF01064.1| hypothetical protein [Arabidopsis thaliana]
          Length = 509

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 102/457 (22%), Positives = 181/457 (39%), Gaps = 56/457 (12%)

Query: 50  SSSARIICEILA--HASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR 107
           SS A +I ++L   H     +ES+L   GI  TP+L+H+ L     +   A+ FF++   
Sbjct: 38  SSDAELISQMLITNHNPFHFMESSLQLNGISLTPNLIHQTLLRLRHNSKIALSFFQYLRS 97

Query: 108 --GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDE 165
                 +P ++NL++D+LG+  +F+ +   +  M +    S  TF  +      AG   +
Sbjct: 98  LPSPSTTPTSFNLIIDILGRVRQFDVVRQLIVEMDQT---SPETFLILVKRLIAAGLTRQ 154

Query: 166 AVMSFDVMS--MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223
           AV +FD     +      +V    LL  +C+    T  A+   N  K+    D   + IL
Sbjct: 155 AVRAFDDAPCFLENRRFRLVEFGFLLDTLCKY-GYTKMAVGVFNERKEEFGSDEKVYTIL 213

Query: 224 LEGWEKEGNVEEANKTFGEMV---------------------------ERFEWNPEH--- 253
           + GW K   ++ A K   EM+                           ERFE N  +   
Sbjct: 214 IAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGICRTASLHPEERFERNVRNAEK 273

Query: 254 -------------VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300
                        V ++   L    R  + +  L  +++MK +   PT++ +++ +  L 
Sbjct: 274 VFDEMRQRGIEPDVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLC 333

Query: 301 KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
                  A +L    MV  G  P S TYN  F+     K  +     + +M     +P+ 
Sbjct: 334 SCGRLEEAEEL-LETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPST 392

Query: 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 420
                 +   ++  + E   EIW+ +  +   P   S   L+ GL +  +  +   +  E
Sbjct: 393 QTYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVE 452

Query: 421 MLNRRILIYEVTMHKLKKAFY--NESRSMRDIFDSLE 455
           M+ R  L  ++T   L K     N+ R+ R +   L+
Sbjct: 453 MIERGFLPQKLTFETLYKGLIQSNKMRTWRRLKKKLD 489


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 112/249 (44%), Gaps = 6/249 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +  GRG + +   + +++D   K G  E M    R M+E GV     T+ +I +  C 
Sbjct: 209 FEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCR 268

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKIVDPDGD 218
           A     A      M   G+  D V   +L+   C++E +   A+E   N V + V  D  
Sbjct: 269 ARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEE-ELDMAMEIKQNMVAEGVGLDEV 327

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  L+ G  K G   +A +  GEM+E     P++   Y   +    R   V   L+ L+
Sbjct: 328 TYTALISGLSKAGRSADAERVLGEMME-AGLEPDNT-TYTMVIDAFCRKGDVKTGLRLLK 385

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M+ +   P +  ++  ++   KL    +A  L + M+   G  PD +TYN++ +   K+
Sbjct: 386 EMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINI-GVSPDDITYNILLDGHCKH 444

Query: 339 KRVHEVEKF 347
            +V ++E+ 
Sbjct: 445 GKVTDIEEL 453



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 127/313 (40%), Gaps = 12/313 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++  L + G      N    M+  GV  ++ +F ++    C AG  D A      MS
Sbjct: 119 FNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMS 178

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             GV  DV    +L+  +CR          F     + + P+   F IL++   K+G+ E
Sbjct: 179 EAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAE 238

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
              +   EM ER    P+ V  Y   +  L R + +  A   +  M+     P    ++ 
Sbjct: 239 TMLELHREMRER-GVRPDAV-TYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTT 296

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +D   K  +   A+++    MV  G   D +TY  +   L K  R  + E+   EM++ 
Sbjct: 297 LIDGYCKEEELDMAMEIKQ-NMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEA 355

Query: 355 EWQPTPLNCATAITMLLDA----DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
             +P      T  TM++DA     + +  + +   +   G  P   + N ++ G   LG+
Sbjct: 356 GLEPD----NTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ 411

Query: 411 LSDVRRFAEEMLN 423
           + +       M+N
Sbjct: 412 MKNADMLLNAMIN 424


>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 879

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 136/331 (41%), Gaps = 43/331 (12%)

Query: 96  SSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFAS 152
           S AV FF W  R  G     + +  MV +LG+   F  +   +  M +DG   ++ T+  
Sbjct: 364 SVAVGFFCWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNR 423

Query: 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI 212
           +  SY  A    EA+  F+ M   G E D V   +L+  I  +      A+    R++++
Sbjct: 424 LIHSYGRANYLREALNVFNQMQEMGCEPDRVTYCTLID-IHAKAGFLDVAMSMYERMQEV 482

Query: 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271
            + PD  ++++++    K GN+  A++ F EMV+                          
Sbjct: 483 GLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVD-------------------------- 516

Query: 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331
                      + C P +  ++  + +  K  +   A++L+  M    G  PD +TY+++
Sbjct: 517 -----------QGCVPNIVTYNILIALQAKARNYQTALELYRDMQNA-GFKPDKVTYSIV 564

Query: 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
            E L     + E E  F EM +N W P        + +   A   E A E ++ +L  G+
Sbjct: 565 MEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGKAGNVEKAWEWYHTMLRAGL 624

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEML 422
           LP   + N LL     + RL D     + M+
Sbjct: 625 LPNVPTCNSLLSAFLRVHRLPDAYNLLQNMV 655


>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 806

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 89/423 (21%), Positives = 158/423 (37%), Gaps = 79/423 (18%)

Query: 81  PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNAVRV 138
           P  V  VL+ S D    A+ FF WA R  R    P  +  M++VL K    +     + +
Sbjct: 174 PSQVCAVLR-SQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVL 232

Query: 139 MKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           MK  G+   P  F+ +  SY  AG+  +A+    +M   GVE +++  N+ +    R  N
Sbjct: 233 MKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRA-N 291

Query: 198 QTSRALEFLNRVK------------------------------------KIVDPDGDSFA 221
           +  +AL FL R++                                    K   PD  S+ 
Sbjct: 292 RLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYY 351

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR--- 278
            ++    KE  + E      +M +     P+ V  Y T +  L +    DEAL FL+   
Sbjct: 352 TIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQV-TYNTLIHMLTKHDHADEALWFLKDAQ 410

Query: 279 ---------------------------------VMKGENCFPTLKFFSNALDILVKLNDS 305
                                            ++   +C P +  ++  ++   +L + 
Sbjct: 411 EKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEV 470

Query: 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT 365
             A +L  +M   HG  P++++Y  +   + +  +  E  +  +   ++ W P  +  + 
Sbjct: 471 DKAKKLLQVMHT-HGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSV 529

Query: 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425
            +  L    +   A ++   ++  G  P     N LL  L   GR  + R+F EE LN+ 
Sbjct: 530 IMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKG 589

Query: 426 ILI 428
             I
Sbjct: 590 CAI 592



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 91/471 (19%), Positives = 175/471 (37%), Gaps = 95/471 (20%)

Query: 76  GIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQR--LSP--YAWNLMVDVLGKNGRFEQ 131
           GI  TP+    V+ +SY       D  +     QR  + P     N  +DV  +  R E+
Sbjct: 237 GIYRTPEAFSRVM-VSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEK 295

Query: 132 MWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
               +  M+  G++ ++ T+  +   YC   + +EA+   + M   G   D V+  +++ 
Sbjct: 296 ALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMG 355

Query: 191 AICRQE-----------------------------------NQTSRALEFLNRVK-KIVD 214
            +C+++                                   +    AL FL   + K   
Sbjct: 356 YLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFR 415

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
            D   ++ ++    KEG + EA     EM+ +    P+ V+ Y   +    R  +VD+A 
Sbjct: 416 IDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPD-VVTYTAVVNGFCRLGEVDKAK 474

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM------------------- 315
           K L+VM      P    ++  L+ + +   S  A ++ ++                    
Sbjct: 475 KLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGL 534

Query: 316 ---------------MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360
                          MV  G FP  +  N++ + L ++ R HE  KF  E +        
Sbjct: 535 RREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINV 594

Query: 361 LNCATAITMLLDADEPEIAIEIWN--YILENGILPLEASANELLVGLRNLGRLSDVRRFA 418
           +N  T I      DE + A+ + +  Y++         +   L+  L   GR+++     
Sbjct: 595 VNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTT--LVDTLGKKGRIAEATELM 652

Query: 419 EEMLNRRI----LIYEVTMHKLKKAFYNESRSMRDIFDSLER-----RCKT 460
           ++ML++ I    + Y   +H+     Y +   + D+   LE+     +C+T
Sbjct: 653 KKMLHKGIDPTPVTYRTVIHR-----YCQMGKVDDLVAILEKMISRQKCRT 698



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDV 172
           + +  +VD LGK GR  +    ++ M   G+   P T+ ++   YC  GK D+ V   + 
Sbjct: 630 FTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILE- 688

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD-PDGDSFAILLEGWEKEG 231
             M   ++     N ++  +C    +   A   L +V +     D  +   L+EG+ K+G
Sbjct: 689 -KMISRQKCRTIYNQVIEKLCVL-GKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKKG 746

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
               A K    M  R    P+  +  +     +++GK VDEA K +
Sbjct: 747 VPLSAYKVACRMFNR-NLIPDVKMCEKLSKRLVLKGK-VDEADKLM 790


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 91/427 (21%), Positives = 173/427 (40%), Gaps = 63/427 (14%)

Query: 53  ARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW--AGRGQR 110
           A+I+C I+     + +      + +  T  L   +L LS D    +  FF+W  +    +
Sbjct: 14  AKIVCGIVVKGHWNSLLKPNVGSNLTSTI-LNQVLLNLSLDGCCVSWAFFKWVESNLNHK 72

Query: 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF----ASIFDS---------- 156
            S  +   M+  L K+ +F+   N +  +     LS P+       I D           
Sbjct: 73  HSLQSSWTMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAVVRIHDDPDSNSQILSW 132

Query: 157 ----YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC--RQENQTSRALEFLNRVK 210
               Y  +    +A+  F+ M +HG +  + A   LL+++   R  N   +  + + RV 
Sbjct: 133 LVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVG 192

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW--------------------- 249
             V P+   F +L+    K G+VE+A +   EM  RF +                     
Sbjct: 193 --VVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYE 250

Query: 250 -------------NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296
                        +P+ ++ Y + +    R  ++ EAL+  R + G    P    ++  +
Sbjct: 251 ALGIQDRMERGGVSPD-IVTYNSLIYGFCREGRMREALRLFREINGAT--PNHVTYTTLI 307

Query: 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356
           D   ++ND   A++L ++M V  G  P  +TYN I   L +  ++ +  +  +EM + + 
Sbjct: 308 DGYCRVNDLEEALRLREVMEV-EGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKV 366

Query: 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416
           +P  + C T I       +   A+++   +LE G+ P + +   L+ G   L  +   + 
Sbjct: 367 EPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKE 426

Query: 417 FAEEMLN 423
           F  EML+
Sbjct: 427 FLFEMLD 433



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/347 (20%), Positives = 147/347 (42%), Gaps = 8/347 (2%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDV 172
           + +N+++    K+G  E+    +  M+   +   L T+ ++   YC  G + EA+   D 
Sbjct: 198 HIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDR 257

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232
           M   GV  D+V  NSL+   CR E +   AL     +     P+  ++  L++G+ +  +
Sbjct: 258 MERGGVSPDIVTYNSLIYGFCR-EGRMREALRLFREING-ATPNHVTYTTLIDGYCRVND 315

Query: 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292
           +EEA +   E++E    +P  V+ Y + L  L    ++ +A + L  M      P     
Sbjct: 316 LEEALR-LREVMEVEGLHPG-VVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTC 373

Query: 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352
           +  ++   K+ D   A+++   M+   G  PD  T+  +     K   V   ++F  EM+
Sbjct: 374 NTLINAYCKIGDMGSAMKVKKKMLE-AGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEML 432

Query: 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412
              + P+    +  +    D D  E  I + + +   G+    +    L+  L  + ++ 
Sbjct: 433 DAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIE 492

Query: 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSM--RDIFDSLERR 457
              R    M  + +    V    L  A++   +++   D+ D +++R
Sbjct: 493 SAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKR 539


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/391 (21%), Positives = 165/391 (42%), Gaps = 52/391 (13%)

Query: 94  SPSSAVDFFRWAGRG--QRLSP--YAWNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLP 148
           SP++AV  +    R     ++P    + +++      GR +  + A+  V+K+   +   
Sbjct: 68  SPAAAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAI 127

Query: 149 TFASIFDSYCGAGKYDEAV-MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207
            F  +    C   +  +A+ +    M+  G   +V + N LL  +C  EN++  ALE L 
Sbjct: 128 AFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLC-DENRSQEALELLQ 186

Query: 208 RV---KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264
            +        PD  S+  ++ G+ KEG++++A  T+ EM++R      +V+ Y + +  L
Sbjct: 187 MMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL--PNVVTYSSIIAAL 244

Query: 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD 324
            + + +D+A++ L  M      P  + +++ +           A+     M    G  PD
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHS-DGVEPD 303

Query: 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM------------LLD 372
            +TYN + + L KN R  E  K F  M K   +P      T +              LLD
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLD 363

Query: 373 ---------------------ADEPEI--AIEIWNYILENGILPLEASANELLVGLRNLG 409
                                A + ++  A+ +++ + + G+ P   +   ++  L   G
Sbjct: 364 LMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSG 423

Query: 410 RLSDVRRFAEEMLNRRI----LIYEVTMHKL 436
           R+ D  R+ E+M++ R+    ++Y   +H L
Sbjct: 424 RVEDAMRYFEQMIDERLSPGNIVYNSLIHSL 454


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 112/249 (44%), Gaps = 6/249 (2%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F +  GRG + +   + +++D   K G  E M    R M+E GV     T+ +I +  C 
Sbjct: 333 FEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCR 392

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKIVDPDGD 218
           A     A      M   G+  D V   +L+   C++E +   A+E   N V + V  D  
Sbjct: 393 ARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEE-ELDMAMEIKQNMVAEGVGLDEV 451

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  L+ G  K G   +A +  GEM+E     P++   Y   +    R   V   L+ L+
Sbjct: 452 TYTALISGLSKAGRSADAERVLGEMME-AGLEPDNT-TYTMVIDAFCRKGDVKTGLRLLK 509

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            M+ +   P +  ++  ++   KL    +A  L + M+   G  PD +TYN++ +   K+
Sbjct: 510 EMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINI-GVSPDDITYNILLDGHCKH 568

Query: 339 KRVHEVEKF 347
            +V ++E+ 
Sbjct: 569 GKVTDIEEL 577



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 127/313 (40%), Gaps = 12/313 (3%)

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N+++  L + G      N    M+  GV  ++ +F ++    C AG  D A      MS
Sbjct: 243 FNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMS 302

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234
             GV  DV    +L+  +CR          F     + + P+   F IL++   K+G+ E
Sbjct: 303 EAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAE 362

Query: 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294
              +   EM ER    P+ V  Y   +  L R + +  A   +  M+     P    ++ 
Sbjct: 363 TMLELHREMRER-GVRPDAV-TYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTT 420

Query: 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354
            +D   K  +   A+++    MV  G   D +TY  +   L K  R  + E+   EM++ 
Sbjct: 421 LIDGYCKEEELDMAMEIKQ-NMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEA 479

Query: 355 EWQPTPLNCATAITMLLDA----DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410
             +P      T  TM++DA     + +  + +   +   G  P   + N ++ G   LG+
Sbjct: 480 GLEPD----NTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ 535

Query: 411 LSDVRRFAEEMLN 423
           + +       M+N
Sbjct: 536 MKNADMLLNAMIN 548


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 131/281 (46%), Gaps = 20/281 (7%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDV 172
           Y +N++VD L K G  ++  N + VM +  V   + T+ S+ D Y    + ++A   F+ 
Sbjct: 190 YTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNT 249

Query: 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPDGDSFAILLEGWEKEG 231
           M+  GV  DV + + +++ +C+ +     A+  L  +  K + P+  +++ L++G  K G
Sbjct: 250 MARRGVTPDVHSYSVMINGLCKTK-MVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSG 308

Query: 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
            + +A     EM  R +  P  V+ Y + L  L +  QVD+A+  L  +K +   P +  
Sbjct: 309 RIFDAWDLVNEMHNRGQ--PADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYT 366

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351
           ++  +D L K      A +++ I+++  G   DSL     F+         +      +M
Sbjct: 367 YTILVDGLCKNGRLKDAQEVYQILLI-KGYHLDSL-----FD---------KALSLLSKM 411

Query: 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL 392
             N   P P+     I  L + D  + A+E+   ++  G+L
Sbjct: 412 EDNGCTPNPVTFEILIRALFENDMNDKAVELLREMIARGLL 452



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 116/266 (43%), Gaps = 44/266 (16%)

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGD 218
            G+  EAV  F+ M +  ++ D+   N L+  +C+ E +  +A   L   +K+ VDPD  
Sbjct: 167 VGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCK-EGEMKKARNVLAVMIKQSVDPDVI 225

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++  L++G+       +A   F  M  R    P+ V +Y   +  L + K VDEA+  L+
Sbjct: 226 TYNSLMDGYFLVKQENKATFVFNTMARR-GVTPD-VHSYSVMINGLCKTKMVDEAVNLLK 283

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH--GAFPDSLTYNMIFECLI 336
            M  ++  P    +S+ +D    L+ S      WD++   H  G   D +TYN + + L 
Sbjct: 284 EMHSKSMAPNTVTYSSLID---GLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALC 340

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           KN   H+V+K                   AIT+L    +  I  +I+ Y +         
Sbjct: 341 KN---HQVDK-------------------AITLLTKIKDQGIQPDIYTYTI--------- 369

Query: 397 SANELLVGLRNLGRLSDVRRFAEEML 422
               L+ GL   GRL D +   + +L
Sbjct: 370 ----LVDGLCKNGRLKDAQEVYQILL 391



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 115/268 (42%), Gaps = 5/268 (1%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPD 216
           C   K  E +   D +   G + + V+  +L+  +C+   +T  A++ L  +  + V P+
Sbjct: 60  CLNDKVKETLHFHDDVIAKGFQLNQVSYGTLIDGLCK-AGETRAAMQVLRNIDGLLVQPN 118

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
              ++ ++    K+  V +A   + +M+ +   +P+ V+ Y T +   +   ++ EA+  
Sbjct: 119 VVMYSTIIYSLCKDKLVIDAFDLYSQMLLK-RISPD-VITYNTLMYGCLIVGRLKEAVGL 176

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
              M  +N  P +  F+  +D L K  +   A  +  +M +     PD +TYN + +   
Sbjct: 177 FNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVM-IKQSVDPDVITYNSLMDGYF 235

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
             K+ ++    F+ M +    P   + +  I  L      + A+ +   +    + P   
Sbjct: 236 LVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTV 295

Query: 397 SANELLVGLRNLGRLSDVRRFAEEMLNR 424
           + + L+ GL   GR+ D      EM NR
Sbjct: 296 TYSSLIDGLHKSGRIFDAWDLVNEMHNR 323



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/310 (19%), Positives = 121/310 (39%), Gaps = 13/310 (4%)

Query: 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR-----QENQTSRALE 204
           F  IF S      +   +     M + G++ D+V +N L++  C        ++    L 
Sbjct: 11  FGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLNDKVKETLH 70

Query: 205 FLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
           F + V  K    +  S+  L++G  K G    A +     ++     P +V+ Y T + +
Sbjct: 71  FHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRN-IDGLLVQP-NVVMYSTIIYS 128

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L + K V +A      M  +   P +  ++  +   + +     AV L++  M+     P
Sbjct: 129 LCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFN-QMLLKNIKP 187

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           D  T+N++ + L K   + +       MIK    P  +   + +       +   A  ++
Sbjct: 188 DIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVF 247

Query: 384 NYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443
           N +   G+ P   S + ++ GL     + +     +EM ++ +    VT   L    +  
Sbjct: 248 NTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKS 307

Query: 444 SRSMRDIFDS 453
            R    IFD+
Sbjct: 308 GR----IFDA 313


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 128/298 (42%), Gaps = 6/298 (2%)

Query: 116 WNLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174
           +N ++  L K+ + ++    + R+M +  +    T+ +I D YC +G   EA        
Sbjct: 283 YNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAV 342

Query: 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNV 233
             G   D V   SL++ +C  E    RALE  N  + K + PD   +  L++G  ++G +
Sbjct: 343 FKGFVPDRVTYCSLINGLC-AEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLI 401

Query: 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293
             A +   EMVE  E     +  Y   +  L +   + +A   +     +   P +  F+
Sbjct: 402 LHALQVMNEMVE--EGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFN 459

Query: 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353
             +D   K      A+QL + M  + G  PD +TYN +   L K  +  EV + F EMI 
Sbjct: 460 TLIDGYCKRLKLDSALQLVERMWTY-GIAPDVITYNSVLNGLCKAGKAKEVNETFEEMIL 518

Query: 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411
              +P  +     I      ++ E A  +   + ++G++P   S N L+ G    G L
Sbjct: 519 KGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDL 576



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 125/266 (46%), Gaps = 6/266 (2%)

Query: 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV-KKIVDPD 216
           C  G+ +EAV   + M  + V  DVV  N+L+  +C+ +++   A ++L R+  +   PD
Sbjct: 257 CEDGRLEEAVALVERMGAY-VAPDVVTYNTLMRGLCK-DSKVQEAAQYLGRMMNQGCIPD 314

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
             ++  +++G+ K G ++EA +   + V +  + P+ V  Y + +  L     ++ AL+ 
Sbjct: 315 DFTYNTIIDGYCKSGMLQEATELLKDAVFK-GFVPDRV-TYCSLINGLCAEGDIERALEL 372

Query: 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLI 336
               + ++  P L  +++ +  L +     HA+Q+ +  MV  G  PD  TYN+I   L 
Sbjct: 373 FNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMN-EMVEEGCHPDIWTYNIIINGLC 431

Query: 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396
           K   + +     ++ I   + P      T I       + + A+++   +   GI P   
Sbjct: 432 KMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVI 491

Query: 397 SANELLVGLRNLGRLSDVRRFAEEML 422
           + N +L GL   G+  +V    EEM+
Sbjct: 492 TYNSVLNGLCKAGKAKEVNETFEEMI 517



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 124/287 (43%), Gaps = 16/287 (5%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LP---TFASIFDSYCGAGKYDEAVMS 169
           + +N++++ L K G    + +A  VM +  V   LP   TF ++ D YC   K D A+  
Sbjct: 421 WTYNIIINGLCKMG---NISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQL 477

Query: 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
            + M  +G+  DV+  NS+L+ +C+          F   + K   P+  ++ IL+E + K
Sbjct: 478 VERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCK 537

Query: 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289
              +EEA+     M +     P+ V ++ T +    R   +D A    + +  +    T 
Sbjct: 538 INQLEEASGVIVRMCQD-GLVPDAV-SFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATA 595

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIM---MVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
             F    +IL+    S   +Q+ + +   M+  G  PD  TY ++ + L K   V     
Sbjct: 596 DTF----NILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYA 651

Query: 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
              EMI   + P+       + +L        A+ I + ++  G++P
Sbjct: 652 HLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVP 698



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/416 (20%), Positives = 158/416 (37%), Gaps = 49/416 (11%)

Query: 42  THLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDF 101
           + L A  I +   +I E+++    DD+++ALA       PD +  +   S  + + A   
Sbjct: 28  SELTASTIPAYRALIRELVSAGRLDDVDAALASARSHLAPDSLQPLYVASIQAYARAGRL 87

Query: 102 FRWAGRGQRLSPY-------AWNLMVDVLGK----------------------------- 125
                  +R+  +       A+N ++D L                               
Sbjct: 88  RAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVR 147

Query: 126 ------NGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178
                  GR       +R + E G  + P  + ++       G    A   FD M    V
Sbjct: 148 LKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDV 207

Query: 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238
             DV   N++L A+C++ +           +K+ +  +  +  I + G  ++G +EEA  
Sbjct: 208 FPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAV- 266

Query: 239 TFGEMVERF-EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297
               +VER   +    V+ Y T +  L +  +V EA ++L  M  + C P    ++  +D
Sbjct: 267 ---ALVERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIID 323

Query: 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357
              K      A +L     VF G  PD +TY  +   L     +    + F+E    + +
Sbjct: 324 GYCKSGMLQEATELLKD-AVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLK 382

Query: 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413
           P  +   + +  L        A+++ N ++E G  P   + N ++ GL  +G +SD
Sbjct: 383 PDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISD 438


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 141/333 (42%), Gaps = 8/333 (2%)

Query: 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDE 165
           RG   S   +N++++ L K G  +Q    ++ M + G+   P T+  +   YC  G   E
Sbjct: 266 RGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVE 325

Query: 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
           A+  ++ M   GV   V + N+++   C++   +    +  + +KK + PD  S+  L+ 
Sbjct: 326 ALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIY 385

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G+ + GN+ EA     E+  RF     +++ Y T +  L R   ++ ALK    M     
Sbjct: 386 GFCRLGNIGEAFILLDEL--RFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGI 443

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P +  ++  ++   KL +   A + +D M+   G  PD   Y       +K     +  
Sbjct: 444 HPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHV-GLAPDQFAYTARIVGELKLGDTAKAF 502

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           K   EM+   + P  +     +  L      E A E+   ++ +G +P   +    +   
Sbjct: 503 KLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAH 562

Query: 406 RNLGRLSDVRRFAEEMLNR----RILIYEVTMH 434
              G L + R    +ML+R     ++ Y V +H
Sbjct: 563 MENGHLREGREIFYDMLSRGQTPTVVTYTVLIH 595



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/324 (19%), Positives = 131/324 (40%), Gaps = 38/324 (11%)

Query: 138 VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197
           ++K++ +  + ++ ++   +C  G   EA +  D +    +  ++V  N+L+  +CR  +
Sbjct: 368 MLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGD 427

Query: 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAY 257
             +      + + + + PD  ++ +L+ G  K GN+  A + F EM+      P+   AY
Sbjct: 428 LETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLH-VGLAPDQ-FAY 485

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
              ++  ++     +A K    M  +   P +  ++  ++ L KL +   A +L    M+
Sbjct: 486 TARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQ-KMI 544

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCAT------------ 365
             G  PD +TY       ++N  + E  + F++M+     PT +                
Sbjct: 545 RDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLD 604

Query: 366 -AITMLLDADEPEIAIEIWNY----------------------ILENGILPLEASANELL 402
            A+   L+  E  +   +  Y                      + E GI P + +   L+
Sbjct: 605 WAMAYFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILI 664

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRI 426
               N+G+  +  R   +ML +RI
Sbjct: 665 NENCNMGKWQEALRLYAQMLGKRI 688



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/312 (18%), Positives = 127/312 (40%), Gaps = 40/312 (12%)

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAIL 223
           +A+  + +M  +G+   V   N++L + C+   +  RAL+ + +++ +   P   +F +L
Sbjct: 220 KALEVYRMMGEYGIRPTVTTYNTMLHSFCKG-GEVQRALDLVPKMQERGCYPSEVTFNVL 278

Query: 224 LEGWEKEGNVEEANKTFGEM------VERFEWNP-------------------------- 251
           + G  K+G +++A     EM      V  + +NP                          
Sbjct: 279 INGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGV 338

Query: 252 -EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
              V ++ T +    +  ++ +A + L  M  +N  P +  ++  +    +L +   A  
Sbjct: 339 SPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFI 398

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           L D +   + +F + +TYN + + L +   +    K   +MI     P  +     +   
Sbjct: 399 LLDELRFRNLSF-NIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGA 457

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----I 426
                  +A E ++ +L  G+ P + +    +VG   LG  +   +  EEML +     +
Sbjct: 458 CKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDV 517

Query: 427 LIYEVTMHKLKK 438
           + Y V ++ L K
Sbjct: 518 ITYNVFVNGLCK 529



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 28/135 (20%), Positives = 56/135 (41%), Gaps = 1/135 (0%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCG 159
           F+    RGQ  +   + +++     NGR +        M+E GV+ ++ T+  + + +C 
Sbjct: 575 FYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCK 634

Query: 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219
             K D+A   F  M   G+  +      L++  C           +   + K + PD  +
Sbjct: 635 VRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCT 694

Query: 220 FAILLEGWEKEGNVE 234
              LL+  +K+  V+
Sbjct: 695 HGALLKKLDKDYKVQ 709


>gi|255660970|gb|ACU25654.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 350

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 151/331 (45%), Gaps = 15/331 (4%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEA 166
           G R S  ++N M+  L  NG+ +++ +   +MKE G V    T+  +   +C  G  D++
Sbjct: 29  GNR-SVSSFNTMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKS 87

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN-RVKKIVDPDGDSFAILLE 225
           +   ++    G   D  A +++++ +C++ N   RA+  LN  +K    P+   +  L+ 
Sbjct: 88  LHVLEMAEQKGGVLDAFAYSAMINGLCKEAN-LDRAVSVLNGMIKSGCKPNVHVYNTLIN 146

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
           G       E+A + F EM      +P  ++ Y T +    + K   EA   ++ +  +  
Sbjct: 147 GLVGASKFEDAIRVFREM-GTMHCSPT-IITYNTLINGFCKNKMFGEAYNLVKELLDKGL 204

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
            P +  +S  ++ L   +    A+QLW+  +   G  PD   +N++   L    ++    
Sbjct: 205 DPGVITYSMLMEGLCFDHKVERALQLWN-QVTSKGFKPDVQMHNILIHGLCSVGKMQLAL 263

Query: 346 KFFHEMIKNEWQPTPLNCATAITML----LDADEPEIAIEIWNYILENGILPLEASANEL 401
             + +M  N W+  P N  +  T++     D D    A+ IW  IL NG+ P   S N  
Sbjct: 264 SLYFDM--NRWKCAP-NLVSHNTLMEGFYKDGDIRN-ALVIWARILRNGLEPDIISYNIT 319

Query: 402 LVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
           L GL +  R+SD   F  + + ++I++ + T
Sbjct: 320 LEGLCSCNRISDAILFLHDAVTKKIVLTKNT 350



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/316 (18%), Positives = 123/316 (38%), Gaps = 45/316 (14%)

Query: 131 QMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190
           ++W    +M  +G  S+ +F ++       GK DE +  +++M   G  +D +    L+ 
Sbjct: 20  ELW---EMMGSEGNRSVSSFNTMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVH 76

Query: 191 AICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248
             C+    +++   LE   +   ++D    +++ ++ G  KE N++ A      M++   
Sbjct: 77  GFCKNGYIDKSLHVLEMAEQKGGVLDAF--AYSAMINGLCKEANLDRAVSVLNGMIKSGC 134

Query: 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308
               HV  Y T +  L+   + ++A++  R M   +C PT+                   
Sbjct: 135 KPNVHV--YNTLINGLVGASKFEDAIRVFREMGTMHCSPTI------------------- 173

Query: 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 368
                            +TYN +     KNK   E      E++     P  +  +  + 
Sbjct: 174 -----------------ITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLME 216

Query: 369 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 428
            L    + E A+++WN +   G  P     N L+ GL ++G++        +M   +   
Sbjct: 217 GLCFDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAP 276

Query: 429 YEVTMHKLKKAFYNES 444
             V+ + L + FY + 
Sbjct: 277 NLVSHNTLMEGFYKDG 292


>gi|293336637|ref|NP_001167760.1| hypothetical protein [Zea mays]
 gi|223943823|gb|ACN25995.1| unknown [Zea mays]
 gi|414877894|tpg|DAA55025.1| TPA: hypothetical protein ZEAMMB73_945476 [Zea mays]
          Length = 536

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 103/482 (21%), Positives = 191/482 (39%), Gaps = 60/482 (12%)

Query: 9   DFVIKN-KIIPSSSSTTTSPTS-----HNPHRPTRPRFPTHLDAPYISSSARIICEILAH 62
           D VI + ++IPS S + T+P       H+   P  P  P  L    +S++ R+    L  
Sbjct: 21  DMVISSLRLIPSPSVSVTNPPPLPTILHSTDSPPDPHPP--LTTMLLSAADRLRGVFLRK 78

Query: 63  ASSDDI-ESALACTGIIPT----PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSP--YA 115
            S  ++   AL+ TGI  T    P+++  V+  S  S ++ V +F WA    +  P  + 
Sbjct: 79  PSGRNVLHQALSSTGIGATMALSPEVLANVVNTSNLSGAATVTYFDWAVTNSKPPPSVHT 138

Query: 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAV--MSFDV 172
            N+++  LG+   F+ + +A+++M+ + +   L T   I DS   A     AV  +S D 
Sbjct: 139 CNIVIRALGRKKFFDYLDDALQIMRRNNIFPDLTTLEIIMDSLVAARHVSRAVEVISTDQ 198

Query: 173 MSMHGVEQDVV---AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229
               G+ +      A   L+  +CR+ +    +       K++   D + +  ++ GW +
Sbjct: 199 FGF-GIGKTCHRKDAFTILIRCLCRRSHVGLASSLLQAARKELFGLDSNVYNDVMGGWAR 257

Query: 230 EGNV-----------------------------------EEANKTFGEMVERFEWNPEHV 254
            G+V                                   E+A K F  MV    + P   
Sbjct: 258 FGSVDKLQEVWTKMQEDGLVPNEVSHCHLIEGLGRVGQTEDALKAFEYMVHE-RYGPT-T 315

Query: 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314
           +AY   +   I    +D  +K+ + M  +NC P ++ +S  +   ++      A+Q++D 
Sbjct: 316 MAYNVLIFNFIHIGDLDSCIKYYKDMLDKNCSPNIETYSKMIKAFLRGRRVADALQMFDD 375

Query: 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374
           M++  G  P++         L      H     + +  K     +       +  L    
Sbjct: 376 MLI-QGVLPNTGMITSFINPLCTFGPPHAALMIYKKSRKAGCVISLKAYKLLLERLAKFG 434

Query: 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMH 434
           +  I ++IW  + E G  P +     ++ GL N+G++       EE L     +  V   
Sbjct: 435 KSGIVLDIWEEMQECGYQPDKEIYEFIVNGLCNVGKVDAAVSVVEESLRNGFCLGRVVYS 494

Query: 435 KL 436
           KL
Sbjct: 495 KL 496


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 151/376 (40%), Gaps = 46/376 (12%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQM---WNAVRVMKEDGVLSLPTFASIFDSYCGAGKYD 164
           G R +   +N+M+D L K GRF+++   W   R++  +    + T+  +    C +G  D
Sbjct: 259 GARPNLATYNVMLDGLCKFGRFKEVGEVWE--RMVANNLQPDVITYGILIHGLCRSGDVD 316

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224
            A   +  +   G+  D    NSL+   C Q  +   A +F +        +  ++ I++
Sbjct: 317 GAARVYSEIIKTGLVIDAAMYNSLVKGFC-QAGRVQEAWKFWDSAGFAGLRNLRTYNIMI 375

Query: 225 EGWEKEGNVEEA----------------NKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +G    G V+EA                  TFG ++     N     A+  F    + GK
Sbjct: 376 KGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGK 435

Query: 269 QVD------------------EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310
           Q+D                  +A+K    M  + C P    ++  +    ++  ++ AV+
Sbjct: 436 QLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVR 495

Query: 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370
           ++   M  +G  P  +TYN + + L K ++  E      EM++N + P      + I  L
Sbjct: 496 IYS-KMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGL 554

Query: 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR----- 425
               + + A+ IW  IL  G+       N L+ GL + G++ +      +M  ++     
Sbjct: 555 FSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPN 614

Query: 426 ILIYEVTMHKLKKAFY 441
           ++ Y   M  L +  Y
Sbjct: 615 LVTYNTLMDGLYETGY 630



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 119/260 (45%), Gaps = 9/260 (3%)

Query: 164 DEAVMSFDVM-SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-----KIVDPDG 217
           D A+ +F  + S+ G    + + N+LL A  R   + S A  F   +      + + P+ 
Sbjct: 100 DAALDAFRALPSILGCNPGIRSHNALLDAFVRAR-RFSDADAFFASLSHGAFGRRIAPNL 158

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            ++ I+L      G+++ A   F + + R +  P+ +  Y T +  L +  ++D AL  L
Sbjct: 159 QTYNIVLRSLCARGDLDRAVTLF-DSLRRRQVAPDRI-TYSTLMCGLAKQDRLDHALDLL 216

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             M      P +  ++  L    K  +    +++WD ++   GA P+  TYN++ + L K
Sbjct: 217 DEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCK 276

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
             R  EV + +  M+ N  QP  +     I  L  + + + A  +++ I++ G++   A 
Sbjct: 277 FGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAM 336

Query: 398 ANELLVGLRNLGRLSDVRRF 417
            N L+ G    GR+ +  +F
Sbjct: 337 YNSLVKGFCQAGRVQEAWKF 356



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 149/348 (42%), Gaps = 18/348 (5%)

Query: 101 FFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLP---TFASIF 154
           F+  AG     +   +N+M+  L  +G  ++   +W+    + E  V  +P   TF ++ 
Sbjct: 356 FWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWD----LLEKDVACIPDTVTFGTLI 411

Query: 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD 214
              C  G  ++A   F+   + G + DV + +S+++ +C           +    K    
Sbjct: 412 HGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCK 471

Query: 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274
           P+   +  L+ G+ +     +A + + +M +    +P  V+ Y T +  L + ++  EA 
Sbjct: 472 PNSHIYNALISGFCQVYRTSDAVRIYSKMADN-GCSPT-VITYNTLIDGLCKAEKYQEAS 529

Query: 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334
              R M      P +  + + +  L        A+ +W   +++ G   D + +N++   
Sbjct: 530 SVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWK-QILYKGLKVDVMMHNILIHG 588

Query: 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM---LLDADEPEIAIEIWNYILENGI 391
           L    +V E    F +M   E +  P N  T  T+   L +    + A  +W  I E+G+
Sbjct: 589 LCSAGKVDEALHVFSDM--KEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGL 646

Query: 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439
            P   S N  + GL +  R+ +  +  +E+L+R I+   +T + L +A
Sbjct: 647 EPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRA 694



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/336 (20%), Positives = 140/336 (41%), Gaps = 11/336 (3%)

Query: 115 AWNLMVDVLGKNGRFEQM---WNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSF 170
            +N ++    K G FE++   W+  +++K+ G   +L T+  + D  C  G++ E    +
Sbjct: 230 CYNALLGGCFKAGEFEKVMRVWD--KLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVW 287

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
           + M  + ++ DV+    L+  +CR  +    A  +   +K  +  D   +  L++G+ + 
Sbjct: 288 ERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQA 347

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM-KGENCFPTL 289
           G V+EA K +      F     ++  Y   +  L     VDEA++   ++ K   C P  
Sbjct: 348 GRVQEAWKFWDS--AGFA-GLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDT 404

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349
             F   +  L +   +  A  +++   V  G   D  +Y+ +   L    R+ +  K + 
Sbjct: 405 VTFGTLIHGLCQNGFANKAFTIFEEARV-SGKQLDVFSYSSMINGLCNVGRLVDAVKVYE 463

Query: 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409
           +M K+  +P        I+          A+ I++ + +NG  P   + N L+ GL    
Sbjct: 464 KMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAE 523

Query: 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR 445
           +  +    A EM+         T   L +  +++ +
Sbjct: 524 KYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKK 559



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/384 (20%), Positives = 158/384 (41%), Gaps = 47/384 (12%)

Query: 108 GQRLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYD 164
           G+R++P    +N+++  L   G  ++       ++   V     T++++        + D
Sbjct: 151 GRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLD 210

Query: 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAI 222
            A+   D M    V+ DVV  N+LL   C +  +  + +   +++ K     P+  ++ +
Sbjct: 211 HALDLLDEMPRSRVQPDVVCYNALLGG-CFKAGEFEKVMRVWDKLVKDPGARPNLATYNV 269

Query: 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK------- 275
           +L+G  K G  +E  + +  MV      P+ V+ Y   +  L R   VD A +       
Sbjct: 270 MLDGLCKFGRFKEVGEVWERMVAN-NLQPD-VITYGILIHGLCRSGDVDGAARVYSEIIK 327

Query: 276 ---------FLRVMKG----ENCFPTLKFFSNA----------LDILVK-LNDST---HA 308
                    +  ++KG           KF+ +A           +I++K L DS     A
Sbjct: 328 TGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEA 387

Query: 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAIT 368
           ++LWD++       PD++T+  +   L +N   ++    F E   +  Q    + ++ I 
Sbjct: 388 IELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMIN 447

Query: 369 MLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR---- 424
            L +      A++++  + ++G  P     N L+ G   + R SD  R   +M +     
Sbjct: 448 GLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSP 507

Query: 425 RILIYEVTMHKLKKA-FYNESRSM 447
            ++ Y   +  L KA  Y E+ S+
Sbjct: 508 TVITYNTLIDGLCKAEKYQEASSV 531


>gi|357127090|ref|XP_003565218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Brachypodium distachyon]
          Length = 886

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 119/250 (47%), Gaps = 10/250 (4%)

Query: 110 RLSP--YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEA 166
           R+ P  +A+N +++ + KNG F +    V  M + G+  +  T+A +  S C  G  D+A
Sbjct: 332 RMVPNIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDA 391

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLE 225
           +   D M   GV   V   NSL++  C++++    A+ FL+ + +I + P+  S++ ++ 
Sbjct: 392 LCMLDRMREKGVRMTVYPYNSLINCCCKKDD-LDMAMGFLSEMVEIGLTPNAASYSPVIA 450

Query: 226 GWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284
           G  ++G++  A +   +M E+   WN      +   +    + K++DEA +    M   N
Sbjct: 451 GLCRKGDLSGAVELHRKMAEKGVAWN---TYTFTALINGFCKAKKMDEASRLFNKMTESN 507

Query: 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344
             P    F+  ++    + D   A QL+D MM   G  PD+ TY  +   L       + 
Sbjct: 508 LEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMC-RGLTPDNYTYRSLISGLCLTDGASKA 566

Query: 345 EKFFHEMIKN 354
           ++F  ++  N
Sbjct: 567 KEFVADLENN 576



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 111/259 (42%), Gaps = 4/259 (1%)

Query: 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203
           VL+  +  ++   +C  G+  EA   ++ M+M G + D+++   ++ A  +Q +     +
Sbjct: 579 VLNKFSLTALLHGFCREGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQHDSEKSCV 638

Query: 204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263
            F    +K V PD      ++  + KEGN+ +A   + EM+   + +  + + Y   +  
Sbjct: 639 LFREMKEKGVRPDNVFHTCMINMYSKEGNMVQALNCWDEMIA--DGHLPNTVTYTALVNN 696

Query: 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323
           L +   +  A    + M   +  P    F+  LD      +   A  L+  M+   G   
Sbjct: 697 LCKSWHLSSAELLCKEMLASHFLPNSYTFNCFLDYFATEGNLETAKDLYFAML--QGFLA 754

Query: 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383
           + ++ N + +   K  ++ E         +N + P  ++ +T I  L    +   AIE+W
Sbjct: 755 NIVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHELCKKGDINEAIELW 814

Query: 384 NYILENGILPLEASANELL 402
           N +L  G+ P   + N L+
Sbjct: 815 NEMLYKGVKPDIVAYNILI 833



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 72/356 (20%), Positives = 146/356 (41%), Gaps = 14/356 (3%)

Query: 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAG 161
           R   +G R++ Y +N +++   K    +     +  M E G+  +  +++ +    C  G
Sbjct: 397 RMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKG 456

Query: 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221
               AV     M+  GV  +     +L++  C+ +     +  F    +  ++P+  +F 
Sbjct: 457 DLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFN 516

Query: 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281
            ++EG+   G++ +A + + +M+ R    P++   Y + +  L       +A +F+  ++
Sbjct: 517 AVIEGYCLVGDIRKAFQLYDQMMCR-GLTPDNY-TYRSLISGLCLTDGASKAKEFVADLE 574

Query: 282 GENCFPTLKFFSNAL-DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340
             NC    KF   AL     +    T A  +W+ M ++ G   D +++ +I    +K   
Sbjct: 575 -NNCSVLNKFSLTALLHGFCREGRLTEAYHVWNEMAMWGGKL-DLISFTIIVYAALKQ-- 630

Query: 341 VHEVEK---FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
            H+ EK    F EM +   +P  +     I M         A+  W+ ++ +G LP   +
Sbjct: 631 -HDSEKSCVLFREMKEKGVRPDNVFHTCMINMYSKEGNMVQALNCWDEMIADGHLPNTVT 689

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES--RSMRDIF 451
              L+  L     LS      +EML    L    T +     F  E    + +D++
Sbjct: 690 YTALVNNLCKSWHLSSAELLCKEMLASHFLPNSYTFNCFLDYFATEGNLETAKDLY 745



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 125/319 (39%), Gaps = 8/319 (2%)

Query: 142 DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSR 201
           D V ++P    I+   C   +  EAV   + M   GV  D V   +L+   CR E +   
Sbjct: 228 DKVSAVPYNVLIY-GLCKNQRVREAVDVKNSMLARGVAADEVTCRTLVYGFCRTE-ELDM 285

Query: 202 ALEFLNRVKKI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
           ALE    + ++   P   + + +L+G  K+G VEEA +   ++ E     P ++ AY   
Sbjct: 286 ALEMTGDMARLGFVPSEANCSFMLDGLRKKGRVEEAFRLACQLGE-LRMVP-NIFAYNAL 343

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           L  + +     EA + +  M  +   P    ++  +  L K      A+ + D M    G
Sbjct: 344 LNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDALCMLDRMRE-KG 402

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
                  YN +  C  K   +     F  EM++    P   + +  I  L    +   A+
Sbjct: 403 VRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAV 462

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           E+   + E G+     +   L+ G     ++ +  R   +M    +   EVT + + + +
Sbjct: 463 ELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGY 522

Query: 441 --YNESRSMRDIFDSLERR 457
               + R    ++D +  R
Sbjct: 523 CLVGDIRKAFQLYDQMMCR 541



 Score = 38.9 bits (89), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 29/154 (18%), Positives = 68/154 (44%), Gaps = 5/154 (3%)

Query: 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           Y +N  +D     G  E   +    M +  + ++ +  ++   +C  G+  EA+      
Sbjct: 723 YTFNCFLDYFATEGNLETAKDLYFAMLQGFLANIVSVNTLIKGFCKVGQIQEAIDLISRS 782

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR-VKKIVDPDGDSFAILLEGWEKEGN 232
           + +G   D ++ ++++  +C++    + A+E  N  + K V PD  ++ IL+      G 
Sbjct: 783 TENGFFPDCISYSTVIHELCKK-GDINEAIELWNEMLYKGVKPDIVAYNILIRWCNIHGE 841

Query: 233 VEEANKTFGEMVERF---EWNPEHVLAYETFLIT 263
            ++    + +MV++     W+    L   T L++
Sbjct: 842 SDKCLGIYIDMVKKGVQPNWHTHRALFVGTSLMS 875


>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 533

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 134/334 (40%), Gaps = 17/334 (5%)

Query: 82  DLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKE 141
           DLVH + + S +S     + F              NL+V  L K    E  +  +  +  
Sbjct: 170 DLVHAMFKNSKESFGITPNIF------------TCNLLVKALCKKNDIESAYKVLDEIPA 217

Query: 142 DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
            G++ +L T+ +I   Y   G  + A    + M   G   D +    L+   C+    + 
Sbjct: 218 MGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSE 277

Query: 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260
            A    +  K  ++P+  ++ +++    KE    EA   F EM++R  + P+  L  +  
Sbjct: 278 AATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDR-SFMPDSSLCCKV- 335

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +  L    +VDEA    R M   NC P     S  +  L K    + A +L+D      G
Sbjct: 336 IDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEARKLFD--EFDKG 393

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
           + P  LTYN +   + +   + E  + + +M + + +P        I  L      +  +
Sbjct: 394 SIPSLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEGV 453

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDV 414
            +   +LE+G  P + +   L  GL+ LG+  D 
Sbjct: 454 RVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDA 487



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 139/332 (41%), Gaps = 12/332 (3%)

Query: 96  SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS--I 153
           SS   F R    G + S  + N +++VL +N RF+ +    +  KE   ++   F    +
Sbjct: 136 SSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLL 195

Query: 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA-ICRQENQTSRAL--EFLNRVK 210
             + C     + A    D +   G+  ++V   ++L   + R + ++++ +  E L+R  
Sbjct: 196 VKALCKKNDIESAYKVLDEIPAMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGW 255

Query: 211 KIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270
               PD  ++ +L++G+ K G   EA     +M E+ E  P  V  Y   +  L + K+ 
Sbjct: 256 Y---PDAITYTVLMDGYCKLGRFSEAATVMDDM-EKNEIEPNEV-TYGVMIRALCKEKKS 310

Query: 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNM 330
            EA      M   +  P        +D L + +    A  LW  M+  +   PD+   + 
Sbjct: 311 GEARNMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLK-NNCMPDNALLST 369

Query: 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390
           +   L K  RV E  K F E  K    P+ L   T I  + +  E   A  +W+ + E  
Sbjct: 370 LIHWLCKEGRVSEARKLFDEFDKGSI-PSLLTYNTLIAGMCEKGELTEAGRLWDDMFERK 428

Query: 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEML 422
             P   + N L+ GL   G + +  R  EEML
Sbjct: 429 CKPNAFTYNVLIEGLSKNGNVKEGVRVLEEML 460



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 162/374 (43%), Gaps = 18/374 (4%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-------TF 150
           A+  F +AG+      + ++    +L K  R  + ++ V  +  D   S P        F
Sbjct: 63  ALQIFLYAGKSHPGFTHNYDTYHSILFKLSR-ARAFDPVESLMADLRNSYPPIKCGENLF 121

Query: 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210
             +  +Y  AG+Y+ ++  F  +   GV++ V ++N+LL+ + + +        F N  +
Sbjct: 122 IDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKE 181

Query: 211 KI-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269
              + P+  +  +L++   K+ ++E A K   E +      P +++ Y T L   +    
Sbjct: 182 SFGITPNIFTCNLLVKALCKKNDIESAYKVLDE-IPAMGLVP-NLVTYTTILGGYVARGD 239

Query: 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329
           ++ A + L  M     +P    ++  +D   KL   + A  + D M   +   P+ +TY 
Sbjct: 240 MESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEK-NEIEPNEVTYG 298

Query: 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389
           ++   L K K+  E    F EM+   + P    C   I  L +  + + A  +W  +L+N
Sbjct: 299 VMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKN 358

Query: 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI---LIYEVTMHKL-KKAFYNESR 445
             +P  A  + L+  L   GR+S+ R+  +E     I   L Y   +  + +K    E+ 
Sbjct: 359 NCMPDNALLSTLIHWLCKEGRVSEARKLFDEFDKGSIPSLLTYNTLIAGMCEKGELTEAG 418

Query: 446 SMRDIFDSLERRCK 459
            + D  D  ER+CK
Sbjct: 419 RLWD--DMFERKCK 430


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 144/326 (44%), Gaps = 7/326 (2%)

Query: 101 FFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYC 158
           FF+  G  G + S + +N+M+D L K G  E   +    MKE G    + T+ S+ D + 
Sbjct: 43  FFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHG 102

Query: 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDG 217
             G  DE +  F+ M     + DV+  N+L++  C+ E +  +A EFL+ +K   + P+ 
Sbjct: 103 KLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFE-RMPKAFEFLHEMKANGLKPNV 161

Query: 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277
            +++  ++ + KEG ++EA K F +M  R    P     Y + +    +   + EALK +
Sbjct: 162 VTYSTFIDAFCKEGMLQEAIKFFVDM-RRVALTPNE-FTYTSLIDANCKAGNLAEALKLV 219

Query: 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337
             +        +  ++  LD L +      A +++  M+   G  P+  TY  +    IK
Sbjct: 220 EEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLN-AGVAPNQETYTALVHGFIK 278

Query: 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS 397
            K +   +    EM +   +P  L   T +  L +    E A  +   I E+GI      
Sbjct: 279 AKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVI 338

Query: 398 ANELLVGLRNLGRLSDVRRFAEEMLN 423
              L+      G+ ++     EEML+
Sbjct: 339 YTTLMDAYFKSGQATEALTLLEEMLD 364



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 129/298 (43%), Gaps = 25/298 (8%)

Query: 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208
           T+ S+ D+ C AG   EA+   + +   G++ +VV   +LL  +C +         F   
Sbjct: 198 TYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAM 257

Query: 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268
           +   V P+ +++  L+ G+ K   +E A     EM E+    P+ +L Y T L  L    
Sbjct: 258 LNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKC-IKPD-LLLYGTILWGLCNES 315

Query: 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328
           +++EA   +  +K          ++  +D   K   +T A+ L + M+       D L  
Sbjct: 316 RLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEML----DLVDGLCK 371

Query: 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP----EIAIEIWN 384
           N  FE           +K F EM+     P  +    A T L+D +      + A+ + +
Sbjct: 372 NNCFEV---------AKKLFDEMLDKGMMPDKI----AYTALIDGNMKHGNLQEALNLRD 418

Query: 385 YILENGI-LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441
            ++E G+ L L A    L+ GL + G++   R   +EM+ + +L  EV    L K +Y
Sbjct: 419 RMIEIGMELDLHAY-TALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYY 475



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 101/244 (41%), Gaps = 9/244 (3%)

Query: 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278
           ++ I+++   KEG++E A   F +M E   + P+ ++ Y + +    +   +DE +    
Sbjct: 58  TYNIMIDYLCKEGDLEMARSLFTQMKEA-GFTPD-IVTYNSLIDGHGKLGLLDECICIFE 115

Query: 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338
            MK  +C P +  ++  ++   K      A +    M   +G  P+ +TY+   +   K 
Sbjct: 116 QMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKA-NGLKPNVVTYSTFIDAFCKE 174

Query: 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA 398
             + E  KFF +M +    P      + I     A     A+++   IL+ GI     + 
Sbjct: 175 GMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTY 234

Query: 399 NELLVGLRNLGRLSDVRRFAEEMLNRRIL----IYEVTMHKLKKAFYNESRSMRDIFDSL 454
             LL GL   GR+ +       MLN  +      Y   +H   KA   E    +DI   +
Sbjct: 235 TALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKA--KEMEYAKDILKEM 292

Query: 455 ERRC 458
           + +C
Sbjct: 293 KEKC 296



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 96/245 (39%), Gaps = 11/245 (4%)

Query: 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM----VERFEWNPEHVLAYETF 260
           FL   K  V P   S   LL    K G  + + K F +M    ++R       V  Y   
Sbjct: 9   FLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKR------SVFTYNIM 62

Query: 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320
           +  L +   ++ A      MK     P +  +++ +D   KL      + +++  M    
Sbjct: 63  IDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFE-QMKDAD 121

Query: 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380
             PD +TYN +  C  K +R+ +  +F HEM  N  +P  +  +T I         + AI
Sbjct: 122 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAI 181

Query: 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440
           + +  +    + P E +   L+      G L++  +  EE+L   I +  VT   L    
Sbjct: 182 KFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGL 241

Query: 441 YNESR 445
             E R
Sbjct: 242 CEEGR 246


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 137/317 (43%), Gaps = 26/317 (8%)

Query: 117 NLMVDVLGKNGRFEQMWNAV-RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
            +++ VL   GR     +   ++ K D      T+ ++ D +   G     +  ++ M  
Sbjct: 394 TVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKA 453

Query: 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLEGWEKEGNVE 234
            G   +VVA  +++ A+C Q  +   ALE  + +K K + P+  S+  L+ G+ K     
Sbjct: 454 DGYNDNVVAYTAVIDALC-QVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKA---- 508

Query: 235 EANKTFGEMVERFEWNPEHVL---AYETFLITLIRGKQVD--EALKFLRVMKGENCFPTL 289
                FG+ +E F+    H      Y   L     GK  +  +A++   +MK +   P +
Sbjct: 509 ---DRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDV 565

Query: 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFH-----GAFPDSLTYNMIFECLIKNKRVHEV 344
              +  L  L K      + +L     VFH     G  PD++TY M+ +C  K  +  E 
Sbjct: 566 VAGNAVLFGLAK------SGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEA 619

Query: 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
            K F++MI+N   P  L   + I  L  A   + A  I+  + E  + P + + N LL G
Sbjct: 620 VKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAG 679

Query: 405 LRNLGRLSDVRRFAEEM 421
           L   G++ +V    EEM
Sbjct: 680 LGREGKVKEVMHLLEEM 696



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 170/410 (41%), Gaps = 35/410 (8%)

Query: 18  PSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGI 77
           PSS +   S    +P RP++ R             AR+  +  A    D+  +A      
Sbjct: 141 PSSRTAGVSSPGLSPSRPSKRRI----------GRARV--QPRAPPPCDERRAA------ 182

Query: 78  IPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRL--SPYAWNLMVDVLGKNGRFEQMWNA 135
               D++H +   S D P+ A++ FR A R  R+  +  + N M++++  +GR   M   
Sbjct: 183 ---EDVIHALR--SADGPAEALERFRSAARKPRVAQTTASCNYMLELMRGHGRVGDMAEV 237

Query: 136 VRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194
             VM+   V  ++ TFA+IF      G    A ++  VM   G+  +    N L+  + +
Sbjct: 238 FDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVK 297

Query: 195 QENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252
                  ALE + RV  +  V P   ++++L+  + K  +VE       EM E     P 
Sbjct: 298 S-GFDREALE-VYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM-EAHGVKP- 353

Query: 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL- 311
           +V +Y   +  L + K+ DEA + L  M+ E C P +   +  + +L      + A  + 
Sbjct: 354 NVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVF 413

Query: 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371
           W   M      PD +TY  + +    N     V + ++ M  + +    +     I  L 
Sbjct: 414 WK--MKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALC 471

Query: 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421
                  A+E+++ + + GI+P + S N L+ G     R  D     + M
Sbjct: 472 QVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHM 521



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 82/376 (21%), Positives = 157/376 (41%), Gaps = 51/376 (13%)

Query: 96   SSAVDFFRWAGRGQR------------LSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKE 141
            +S +D    AGRG              L P    +N ++  LG+ G+ +++ + +  M  
Sbjct: 639  NSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYH 698

Query: 142  DGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200
                 +L T+ +I D  C  G  ++A+     M+  G   D+ + N+++  + ++E + +
Sbjct: 699  SNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEE-RYN 757

Query: 201  RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA------------NKT--------- 239
             A     ++KK++ PD  +   +L  + K G ++EA            +KT         
Sbjct: 758  EAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLM 817

Query: 240  --------FGEMVERFEWNPEHVLAYETFLIT-----LIRGKQVDEALKFLRVMKGENCF 286
                      + +E  E      +  + F +      L + K+  EA + ++  K     
Sbjct: 818  EGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVS 877

Query: 287  PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346
                 +++ +  LV  N    A  L+  M    G  PD  TYN++ + + K+ R+ E+ K
Sbjct: 878  LKTGLYNSLICGLVDENLIDIAEGLFAEMKEL-GCGPDEFTYNLLLDAMGKSMRIEEMLK 936

Query: 347  FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406
               EM +  ++ T +   T I+ L+ +   E AI+++  ++  G  P   +   LL GL 
Sbjct: 937  VQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLL 996

Query: 407  NLGRLSDVRRFAEEML 422
              GR+ D      EML
Sbjct: 997  KAGRIEDAENLFNEML 1012



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 123/288 (42%), Gaps = 18/288 (6%)

Query: 114  YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAV-MSFD 171
            + +NL++D +GK+ R E+M      M   G  S   T+ +I      + + ++A+ + ++
Sbjct: 916  FTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYN 975

Query: 172  VMSMHGVEQDVVAVNSLLSAICRQ------ENQTSRALEFLNRVKKIVDPDGDSFAILLE 225
            +MS  G          LL  + +       EN  +  LE+  +    +      + ILL 
Sbjct: 976  LMS-QGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTI------YNILLN 1028

Query: 226  GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
            G    GN E+    F +MV++   NP+ + +Y   + TL +  Q+++ L + R +     
Sbjct: 1029 GHRIAGNTEKVCHLFQDMVDQ-GINPD-IKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGL 1086

Query: 286  FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
             P L  ++  +D L K      AV L++ M    G  P+  TYN +   L K  +  E  
Sbjct: 1087 EPDLITYNLLIDGLGKSKRLEEAVSLFNEMQK-KGIVPNLYTYNSLILHLGKAGKAAEAG 1145

Query: 346  KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP 393
            K + E++   W+P        I     +   + A   +  ++  G LP
Sbjct: 1146 KMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLP 1193



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/356 (20%), Positives = 149/356 (41%), Gaps = 9/356 (2%)

Query: 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEA 166
           G  L+ Y +N +V  L K+G   +     RVM  DGV+ S+ T++ +  ++      +  
Sbjct: 280 GIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETV 339

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-KIVDPDGDSFAILLE 225
           +     M  HGV+ +V +  ++   +  Q  +   A   L +++ +   PD  +  +L++
Sbjct: 340 LWLLREMEAHGVKPNVYSY-TICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQ 398

Query: 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285
                G + +A   F +M ++ +  P+ V  Y T L            ++    MK +  
Sbjct: 399 VLCDAGRISDAKDVFWKM-KKSDQKPDRV-TYITLLDKFGDNGDSQSVMEIWNAMKADGY 456

Query: 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345
              +  ++  +D L ++     A++++D M    G  P+  +YN +    +K  R  +  
Sbjct: 457 NDNVVAYTAVIDALCQVGRVFEALEMFDEMKQ-KGIVPEQYSYNSLISGFLKADRFGDAL 515

Query: 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405
           + F  M  +  +P        I     + E   AI+ +  +   GI+P   + N +L GL
Sbjct: 516 ELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGL 575

Query: 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESR---SMRDIFDSLERRC 458
              GRL   +R   E+    +    +T   + K     S+   +++  +D +E  C
Sbjct: 576 AKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNC 631



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 122/284 (42%), Gaps = 16/284 (5%)

Query: 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVM 173
           A N ++  L K+GR          +K  GV     T+  +      A K+DEAV  F  M
Sbjct: 567 AGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDM 626

Query: 174 SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAILLEGWEKEGN 232
             +    DV+AVNSL+  +  +  +   A     ++K++ ++P   ++  LL G  +EG 
Sbjct: 627 IENNCVPDVLAVNSLIDTL-YKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGK 685

Query: 233 VEEANKTFGEMVERFEWN-PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291
           V+E      EM   +  N P +++ Y T L  L +   V++AL  L  M  + C P L  
Sbjct: 686 VKEVMHLLEEM---YHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSS 742

Query: 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK----NKRVHEVEKF 347
           ++  +  LVK      A  ++  M       PD  T   I    +K     + +H ++ +
Sbjct: 743 YNTVIYGLVKEERYNEAFSIFCQMKKV--LIPDYATLCTILPSFVKIGLMKEALHIIKDY 800

Query: 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391
           F   ++   +    +C + +  +L     E +IE    I  +GI
Sbjct: 801 F---LQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGI 841



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 137/322 (42%), Gaps = 22/322 (6%)

Query: 115  AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF-DVM 173
            ++N ++  L K  R+ + ++    MK+  +    T  +I  S+   G   EA+    D  
Sbjct: 742  SYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYF 801

Query: 174  SMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG---DSFAI--LLEGWE 228
               G + D  + +SL+  I ++     +++EF     +I+   G   D F +  L++   
Sbjct: 802  LQPGSKTDRSSCHSLMEGILKKAG-IEKSIEF----AEIIASSGITLDDFFLCPLIKHLC 856

Query: 229  KEGNVEEANKTFGEMVERFEWNPEHVLA--YETFLITLIRGKQVDEALKFLRVMKGENCF 286
            K+    EA+    E+V++F+     +    Y + +  L+    +D A      MK   C 
Sbjct: 857  KQKKALEAH----ELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCG 912

Query: 287  PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH--GAFPDSLTYNMIFECLIKNKRVHEV 344
            P    ++  LD + K   S    ++  +    H  G     +TYN I   L+K++R+ + 
Sbjct: 913  PDEFTYNLLLDAMGK---SMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQA 969

Query: 345  EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404
               ++ ++   + PTP      +  LL A   E A  ++N +LE G        N LL G
Sbjct: 970  IDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNG 1029

Query: 405  LRNLGRLSDVRRFAEEMLNRRI 426
             R  G    V    ++M+++ I
Sbjct: 1030 HRIAGNTEKVCHLFQDMVDQGI 1051


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 4/243 (1%)

Query: 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSF 170
           + + +  ++  + K G+ E     +  M+  GV L+L  F +  D YC  GK DEA+   
Sbjct: 356 NAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQ 415

Query: 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230
            +M   G+  DV   N L + +C+            + V+K V P+  +F + +E + KE
Sbjct: 416 AIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKE 475

Query: 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290
           GN+ EA + F +M ++ E    +++ Y T +    + ++V +A K    M  +   P L 
Sbjct: 476 GNLAEAERLFRDMEKKGE--VPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLY 533

Query: 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350
            +S+ +     +     A++L++ M +  G   +  TY  +   L K  R  E  K + E
Sbjct: 534 TYSSLIHGECIVGRVDEALKLFNEMRL-KGITRNVATYTSMISGLSKEGRADEAFKLYDE 592

Query: 351 MIK 353
           M+K
Sbjct: 593 MMK 595



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 137/305 (44%), Gaps = 11/305 (3%)

Query: 140 KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT 199
           KE  V S+ T++ +   Y  +G  +EA   F+ M    +E DV   +S++S   R+    
Sbjct: 280 KEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISW-SRRLGNM 338

Query: 200 SRALEFLNRV-KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAY 257
            RA    + + ++ + P+  ++  L+ G  K G +E A     EM  +  + N   ++ +
Sbjct: 339 KRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLN---LVIF 395

Query: 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317
            T +    R  ++DEAL+   +M+ +     +  ++   + L KL+    A  + +  MV
Sbjct: 396 NTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILN-SMV 454

Query: 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377
             G  P+ +T+ M  E   K   + E E+ F +M K    P  +   T I      ++ +
Sbjct: 455 EKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVK 514

Query: 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM----LNRRILIYEVTM 433
            A +I + ++  G+LP   + + L+ G   +GR+ +  +   EM    + R +  Y   +
Sbjct: 515 QAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMI 574

Query: 434 HKLKK 438
             L K
Sbjct: 575 SGLSK 579


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.135    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,208,820,738
Number of Sequences: 23463169
Number of extensions: 300936559
Number of successful extensions: 897233
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2539
Number of HSP's successfully gapped in prelim test: 3573
Number of HSP's that attempted gapping in prelim test: 836802
Number of HSP's gapped (non-prelim): 28377
length of query: 463
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 317
effective length of database: 8,933,572,693
effective search space: 2831942543681
effective search space used: 2831942543681
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)