Query 012442
Match_columns 463
No_of_seqs 628 out of 3238
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 02:41:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.6E-60 7.7E-65 475.6 51.6 403 52-462 373-784 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 7.2E-60 1.6E-64 473.3 49.2 358 79-440 435-799 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.7E-57 5.9E-62 452.0 41.5 373 67-458 108-520 (697)
4 PLN03081 pentatricopeptide (PP 100.0 4E-56 8.6E-61 443.6 43.6 376 66-463 143-559 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.8E-54 6E-59 440.4 40.3 365 67-446 72-471 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 6.9E-54 1.5E-58 437.5 42.0 375 67-458 208-651 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.8E-24 1.2E-28 221.8 48.4 353 92-459 546-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 5.1E-23 1.1E-27 214.7 48.1 350 93-455 513-864 (899)
9 PRK11788 tetratricopeptide rep 99.9 7.7E-23 1.7E-27 192.0 36.2 302 122-431 44-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 1.2E-22 2.5E-27 190.7 36.0 329 68-412 24-364 (389)
11 PRK15174 Vi polysaccharide exp 99.9 1.6E-18 3.4E-23 170.9 45.4 324 90-424 53-381 (656)
12 PRK15174 Vi polysaccharide exp 99.9 1.8E-18 4E-23 170.4 41.9 331 115-457 44-381 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 7E-18 1.5E-22 166.8 45.1 358 90-456 138-570 (615)
14 PRK11447 cellulose synthase su 99.9 2.7E-17 5.8E-22 173.2 46.0 352 90-455 280-738 (1157)
15 PRK10049 pgaA outer membrane p 99.9 9.8E-17 2.1E-21 161.6 47.0 358 90-458 60-453 (765)
16 PRK11447 cellulose synthase su 99.9 6.5E-17 1.4E-21 170.3 46.5 353 95-457 251-700 (1157)
17 KOG4626 O-linked N-acetylgluco 99.9 2.8E-18 6E-23 155.3 30.8 323 91-424 128-485 (966)
18 TIGR00990 3a0801s09 mitochondr 99.8 9.5E-17 2.1E-21 158.8 43.0 342 76-425 155-572 (615)
19 KOG4626 O-linked N-acetylgluco 99.8 2.9E-18 6.3E-23 155.1 26.7 338 108-455 111-483 (966)
20 PRK14574 hmsH outer membrane p 99.8 8.5E-15 1.8E-19 145.2 45.2 361 90-457 79-509 (822)
21 PRK10049 pgaA outer membrane p 99.8 3.2E-15 6.9E-20 150.7 42.6 337 90-437 94-467 (765)
22 KOG4422 Uncharacterized conser 99.8 1.7E-13 3.7E-18 119.4 39.8 368 67-446 136-577 (625)
23 PRK14574 hmsH outer membrane p 99.7 2.2E-12 4.7E-17 128.3 44.1 333 90-432 113-519 (822)
24 KOG2076 RNA polymerase III tra 99.7 8.6E-13 1.9E-17 125.3 38.2 351 90-446 150-542 (895)
25 KOG4422 Uncharacterized conser 99.7 7.5E-13 1.6E-17 115.4 34.7 357 77-441 203-607 (625)
26 PRK10747 putative protoheme IX 99.7 2.6E-13 5.6E-18 126.5 34.3 285 126-423 97-389 (398)
27 PRK09782 bacteriophage N4 rece 99.7 1.7E-12 3.8E-17 131.6 42.5 186 228-423 520-705 (987)
28 TIGR00540 hemY_coli hemY prote 99.7 5.7E-13 1.2E-17 124.9 34.7 287 125-421 96-396 (409)
29 TIGR00540 hemY_coli hemY prote 99.7 8.5E-13 1.8E-17 123.7 35.2 305 80-388 85-398 (409)
30 PRK09782 bacteriophage N4 rece 99.7 3E-12 6.4E-17 129.9 41.3 176 91-282 90-275 (987)
31 PRK10747 putative protoheme IX 99.7 1.4E-12 3E-17 121.6 36.1 294 81-388 86-389 (398)
32 PF13429 TPR_15: Tetratricopep 99.7 5.3E-16 1.1E-20 138.1 12.7 261 118-387 13-275 (280)
33 PF13429 TPR_15: Tetratricopep 99.7 8.5E-16 1.8E-20 136.8 13.7 261 188-458 14-278 (280)
34 KOG1126 DNA-binding cell divis 99.7 3.2E-14 6.9E-19 130.7 24.0 288 128-430 334-626 (638)
35 COG2956 Predicted N-acetylgluc 99.6 4.8E-12 1E-16 106.6 31.6 288 90-387 46-345 (389)
36 KOG2002 TPR-containing nuclear 99.6 2.8E-12 6E-17 122.8 33.7 349 92-446 320-732 (1018)
37 KOG1126 DNA-binding cell divis 99.6 3.3E-13 7E-18 124.2 25.7 266 162-446 334-607 (638)
38 COG2956 Predicted N-acetylgluc 99.6 5.2E-12 1.1E-16 106.4 29.8 289 125-424 47-347 (389)
39 KOG2003 TPR repeat-containing 99.6 7.9E-12 1.7E-16 110.0 31.1 349 93-453 251-718 (840)
40 KOG1155 Anaphase-promoting com 99.6 4E-11 8.6E-16 106.0 35.2 326 108-446 159-523 (559)
41 KOG2076 RNA polymerase III tra 99.6 4.4E-11 9.6E-16 113.9 35.8 329 121-458 147-509 (895)
42 COG3071 HemY Uncharacterized e 99.6 1E-10 2.3E-15 101.7 33.8 286 126-422 97-388 (400)
43 KOG2002 TPR-containing nuclear 99.6 3E-11 6.5E-16 115.9 32.1 357 94-459 251-711 (1018)
44 COG3071 HemY Uncharacterized e 99.5 1.3E-10 2.8E-15 101.1 32.7 280 160-455 97-384 (400)
45 KOG1915 Cell cycle control pro 99.5 4.2E-10 9.1E-15 99.9 36.1 358 92-459 86-538 (677)
46 KOG0495 HAT repeat protein [RN 99.5 1E-09 2.2E-14 101.2 39.7 343 93-446 420-769 (913)
47 TIGR02521 type_IV_pilW type IV 99.5 1E-11 2.3E-16 107.6 26.2 202 216-423 30-231 (234)
48 KOG1155 Anaphase-promoting com 99.5 7.8E-11 1.7E-15 104.2 30.1 289 123-423 237-535 (559)
49 PRK12370 invasion protein regu 99.5 2.2E-11 4.8E-16 118.6 28.0 248 130-390 278-536 (553)
50 KOG0495 HAT repeat protein [RN 99.5 2E-09 4.3E-14 99.4 38.1 335 96-446 533-867 (913)
51 TIGR02521 type_IV_pilW type IV 99.5 3.5E-11 7.5E-16 104.3 26.4 196 113-314 31-228 (234)
52 PRK12370 invasion protein regu 99.5 7.9E-11 1.7E-15 114.7 31.2 267 145-425 254-536 (553)
53 PF12569 NARP1: NMDA receptor- 99.5 2.2E-10 4.7E-15 108.0 32.8 290 121-422 12-332 (517)
54 KOG1129 TPR repeat-containing 99.5 3.4E-11 7.5E-16 101.7 23.6 231 150-389 226-458 (478)
55 KOG2003 TPR repeat-containing 99.5 8.5E-11 1.8E-15 103.6 25.6 206 159-374 502-708 (840)
56 KOG1156 N-terminal acetyltrans 99.4 9.6E-09 2.1E-13 94.9 38.2 375 68-461 30-468 (700)
57 KOG4318 Bicoid mRNA stability 99.4 7.8E-11 1.7E-15 111.9 23.9 266 108-410 20-286 (1088)
58 KOG1173 Anaphase-promoting com 99.4 6.4E-10 1.4E-14 100.9 28.6 287 146-443 243-535 (611)
59 KOG0547 Translocase of outer m 99.4 2E-09 4.4E-14 96.0 29.8 352 91-453 127-562 (606)
60 KOG1915 Cell cycle control pro 99.4 3.1E-08 6.6E-13 88.4 36.8 334 80-425 141-537 (677)
61 PF13041 PPR_2: PPR repeat fam 99.4 1.2E-12 2.6E-17 82.1 6.9 50 323-372 1-50 (50)
62 PF13041 PPR_2: PPR repeat fam 99.4 1.1E-12 2.3E-17 82.4 6.1 50 393-442 1-50 (50)
63 KOG1173 Anaphase-promoting com 99.4 1.3E-09 2.8E-14 99.0 27.6 290 108-406 239-533 (611)
64 KOG4318 Bicoid mRNA stability 99.4 5.6E-11 1.2E-15 112.9 19.8 273 135-446 12-287 (1088)
65 PF12569 NARP1: NMDA receptor- 99.3 8.2E-09 1.8E-13 97.5 32.4 294 152-457 9-334 (517)
66 KOG1174 Anaphase-promoting com 99.3 1.6E-08 3.5E-13 88.5 30.3 268 146-425 231-501 (564)
67 COG3063 PilF Tfp pilus assembl 99.3 5E-09 1.1E-13 84.7 24.1 195 115-315 37-233 (250)
68 cd05804 StaR_like StaR_like; a 99.3 7.6E-08 1.6E-12 89.3 35.0 308 112-424 5-336 (355)
69 KOG1174 Anaphase-promoting com 99.3 5.5E-08 1.2E-12 85.3 30.8 290 90-390 207-501 (564)
70 KOG1840 Kinesin light chain [C 99.3 8.5E-09 1.8E-13 96.3 26.9 239 183-422 200-477 (508)
71 KOG1840 Kinesin light chain [C 99.2 4.3E-09 9.3E-14 98.2 23.9 240 147-387 199-477 (508)
72 COG3063 PilF Tfp pilus assembl 99.2 1.8E-08 3.9E-13 81.6 23.9 197 220-422 38-234 (250)
73 PRK11189 lipoprotein NlpI; Pro 99.2 1.7E-08 3.8E-13 90.2 26.8 205 218-435 65-275 (296)
74 PRK11189 lipoprotein NlpI; Pro 99.2 2.2E-08 4.7E-13 89.5 26.9 195 90-292 75-273 (296)
75 KOG0547 Translocase of outer m 99.2 3.7E-09 8E-14 94.4 21.3 219 90-315 337-563 (606)
76 KOG1129 TPR repeat-containing 99.2 2.9E-09 6.4E-14 90.2 18.4 230 186-424 227-458 (478)
77 KOG1156 N-terminal acetyltrans 99.2 4.5E-07 9.8E-12 84.2 32.5 330 87-426 83-470 (700)
78 cd05804 StaR_like StaR_like; a 99.2 6.5E-07 1.4E-11 83.0 34.4 306 146-458 5-337 (355)
79 KOG4162 Predicted calmodulin-b 99.1 1.4E-06 3E-11 82.7 33.4 332 108-446 318-770 (799)
80 KOG1914 mRNA cleavage and poly 99.1 1.1E-06 2.5E-11 79.9 30.9 375 78-459 17-499 (656)
81 KOG2047 mRNA splicing factor [ 99.1 2.5E-06 5.4E-11 79.3 33.4 202 148-355 249-507 (835)
82 KOG3785 Uncharacterized conser 99.1 8.8E-07 1.9E-11 76.4 28.2 349 90-452 68-485 (557)
83 KOG0624 dsRNA-activated protei 99.1 2.9E-06 6.3E-11 73.0 30.8 292 90-390 49-371 (504)
84 KOG2376 Signal recognition par 99.1 6.6E-06 1.4E-10 75.9 34.6 309 124-446 90-508 (652)
85 KOG4340 Uncharacterized conser 99.0 2.4E-07 5.2E-12 77.9 22.2 284 91-385 22-335 (459)
86 KOG1125 TPR repeat-containing 99.0 9.8E-08 2.1E-12 87.4 20.9 218 90-315 296-524 (579)
87 KOG2376 Signal recognition par 99.0 1.9E-06 4E-11 79.4 28.7 359 81-460 13-449 (652)
88 KOG1125 TPR repeat-containing 99.0 1.6E-07 3.5E-12 86.0 21.6 246 192-446 295-558 (579)
89 KOG3785 Uncharacterized conser 99.0 4.5E-06 9.8E-11 72.2 28.1 355 92-458 35-454 (557)
90 PF04733 Coatomer_E: Coatomer 99.0 4.7E-08 1E-12 86.1 16.7 82 340-423 182-264 (290)
91 KOG1070 rRNA processing protei 99.0 9.3E-07 2E-11 88.9 27.1 242 206-456 1447-1695(1710)
92 PF04733 Coatomer_E: Coatomer 98.9 7.8E-08 1.7E-12 84.7 16.4 243 126-388 14-264 (290)
93 KOG4340 Uncharacterized conser 98.9 9.9E-07 2.2E-11 74.3 21.3 292 115-420 12-335 (459)
94 KOG4162 Predicted calmodulin-b 98.9 1.2E-05 2.6E-10 76.6 30.1 130 291-424 652-783 (799)
95 KOG0624 dsRNA-activated protei 98.9 3.1E-05 6.8E-10 66.8 29.5 304 110-425 35-371 (504)
96 KOG0548 Molecular co-chaperone 98.9 2.4E-05 5.2E-10 71.6 30.3 342 90-442 13-471 (539)
97 KOG1070 rRNA processing protei 98.8 4.2E-06 9E-11 84.4 27.1 215 134-358 1445-1667(1710)
98 KOG2047 mRNA splicing factor [ 98.8 6.9E-05 1.5E-09 70.1 33.0 324 86-416 354-715 (835)
99 PLN02789 farnesyltranstransfer 98.8 5.6E-06 1.2E-10 74.1 25.5 205 91-301 49-267 (320)
100 PLN02789 farnesyltranstransfer 98.8 1.6E-05 3.5E-10 71.2 28.0 210 120-337 44-267 (320)
101 KOG1128 Uncharacterized conser 98.8 1.1E-06 2.4E-11 82.8 20.3 207 115-334 426-632 (777)
102 TIGR03302 OM_YfiO outer membra 98.8 1.6E-06 3.5E-11 75.1 20.2 183 110-314 30-228 (235)
103 PF12854 PPR_1: PPR repeat 98.8 8.6E-09 1.9E-13 57.9 3.8 32 390-421 2-33 (34)
104 PRK04841 transcriptional regul 98.8 2.9E-05 6.2E-10 81.6 32.6 308 117-425 413-761 (903)
105 PRK04841 transcriptional regul 98.8 7.6E-05 1.6E-09 78.5 35.6 336 122-458 383-761 (903)
106 KOG1914 mRNA cleavage and poly 98.8 0.00016 3.4E-09 66.5 32.9 152 269-423 346-500 (656)
107 PF12854 PPR_1: PPR repeat 98.8 1.3E-08 2.9E-13 57.1 4.1 32 320-351 2-33 (34)
108 TIGR03302 OM_YfiO outer membra 98.8 2.1E-06 4.5E-11 74.4 19.9 58 331-388 172-231 (235)
109 KOG1128 Uncharacterized conser 98.8 7.9E-07 1.7E-11 83.8 17.8 203 197-422 412-614 (777)
110 COG5010 TadD Flp pilus assembl 98.7 3.5E-06 7.5E-11 70.1 19.4 166 142-314 62-227 (257)
111 KOG2053 Mitochondrial inherita 98.7 0.00031 6.6E-09 68.5 38.2 101 68-169 32-132 (932)
112 COG5010 TadD Flp pilus assembl 98.7 2.9E-06 6.4E-11 70.5 18.6 152 91-244 78-229 (257)
113 KOG0985 Vesicle coat protein c 98.7 8.1E-05 1.8E-09 73.1 30.2 251 157-446 1058-1329(1666)
114 KOG1127 TPR repeat-containing 98.7 3.8E-05 8.3E-10 75.3 26.1 185 93-281 472-657 (1238)
115 PRK15179 Vi polysaccharide bio 98.7 1.7E-05 3.8E-10 78.3 24.7 181 179-372 83-267 (694)
116 PRK14720 transcript cleavage f 98.6 3E-05 6.4E-10 77.6 25.9 237 109-371 27-268 (906)
117 KOG3060 Uncharacterized conser 98.6 4.5E-05 9.7E-10 63.2 22.3 152 197-354 66-220 (289)
118 PRK14720 transcript cleavage f 98.6 1.9E-05 4E-10 79.0 24.2 220 145-406 29-268 (906)
119 PRK10370 formate-dependent nit 98.6 3.5E-06 7.5E-11 70.2 15.2 119 126-246 52-173 (198)
120 COG4783 Putative Zn-dependent 98.6 4.7E-05 1E-09 69.1 23.0 247 120-399 209-463 (484)
121 KOG3617 WD40 and TPR repeat-co 98.6 0.00019 4.1E-09 69.2 27.7 73 193-281 922-994 (1416)
122 KOG3081 Vesicle coat complex C 98.6 0.00013 2.9E-09 60.9 23.5 251 154-424 15-271 (299)
123 KOG0548 Molecular co-chaperone 98.6 0.0004 8.7E-09 63.9 28.6 298 119-424 8-421 (539)
124 KOG2053 Mitochondrial inherita 98.6 0.00084 1.8E-08 65.6 32.1 219 92-314 22-251 (932)
125 PRK10370 formate-dependent nit 98.6 5.4E-06 1.2E-10 69.1 15.7 157 120-293 23-182 (198)
126 PRK15359 type III secretion sy 98.5 9.3E-06 2E-10 63.9 16.2 83 197-282 38-120 (144)
127 PRK15179 Vi polysaccharide bio 98.5 2.2E-05 4.7E-10 77.6 21.9 185 107-302 80-268 (694)
128 KOG3081 Vesicle coat complex C 98.5 0.00024 5.1E-09 59.5 23.6 162 214-389 105-271 (299)
129 PRK15359 type III secretion sy 98.5 1.2E-05 2.5E-10 63.4 15.6 55 120-174 31-85 (144)
130 KOG3060 Uncharacterized conser 98.5 0.00014 3.1E-09 60.2 21.3 127 116-244 55-181 (289)
131 KOG3617 WD40 and TPR repeat-co 98.5 4.5E-05 9.8E-10 73.3 20.7 244 108-387 721-994 (1416)
132 TIGR02552 LcrH_SycD type III s 98.4 1.6E-05 3.4E-10 62.2 14.5 96 148-245 18-113 (135)
133 KOG0985 Vesicle coat protein c 98.4 0.0024 5.1E-08 63.4 31.2 229 182-446 1104-1357(1666)
134 COG4783 Putative Zn-dependent 98.4 0.00053 1.1E-08 62.5 24.9 238 93-362 217-461 (484)
135 TIGR02552 LcrH_SycD type III s 98.4 2.6E-05 5.5E-10 61.0 14.4 108 102-211 6-113 (135)
136 KOG1127 TPR repeat-containing 98.3 0.00095 2.1E-08 66.0 27.0 114 94-209 507-622 (1238)
137 KOG3616 Selective LIM binding 98.3 0.00053 1.2E-08 65.4 24.5 111 224-350 739-849 (1636)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.7E-05 5.9E-10 71.2 15.1 127 147-281 169-295 (395)
139 TIGR00756 PPR pentatricopeptid 98.3 1.6E-06 3.4E-11 49.5 4.4 33 397-429 2-34 (35)
140 KOG3616 Selective LIM binding 98.3 0.00098 2.1E-08 63.7 24.1 167 191-385 741-907 (1636)
141 TIGR00756 PPR pentatricopeptid 98.2 3E-06 6.4E-11 48.3 4.6 33 327-359 2-34 (35)
142 PF10037 MRP-S27: Mitochondria 98.2 2.4E-05 5.2E-10 71.9 12.1 117 327-443 68-186 (429)
143 PF13812 PPR_3: Pentatricopept 98.2 3.1E-06 6.7E-11 47.9 4.2 33 396-428 2-34 (34)
144 PF09976 TPR_21: Tetratricopep 98.2 0.00022 4.8E-09 56.3 16.3 124 116-242 15-143 (145)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 9.5E-05 2E-09 67.7 15.4 127 113-244 169-295 (395)
146 PF13812 PPR_3: Pentatricopept 98.1 4.7E-06 1E-10 47.1 4.3 33 148-180 2-34 (34)
147 PF10037 MRP-S27: Mitochondria 98.1 4.1E-05 9E-10 70.3 12.4 133 205-338 50-186 (429)
148 PF09976 TPR_21: Tetratricopep 98.1 0.00037 7.9E-09 55.1 15.5 21 262-282 56-76 (145)
149 PF01535 PPR: PPR repeat; Int 98.0 9.7E-06 2.1E-10 44.6 3.7 30 397-426 2-31 (31)
150 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00026 5.7E-09 53.7 13.0 94 150-246 5-105 (119)
151 COG5107 RNA14 Pre-mRNA 3'-end 98.0 0.012 2.7E-07 53.3 30.8 117 326-446 398-518 (660)
152 PF08579 RPM2: Mitochondrial r 98.0 0.00015 3.3E-09 52.2 9.7 70 374-443 39-117 (120)
153 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00042 9.1E-09 52.6 13.3 95 188-283 8-105 (119)
154 PRK10866 outer membrane biogen 97.9 0.0051 1.1E-07 53.1 20.7 183 112-314 31-237 (243)
155 cd00189 TPR Tetratricopeptide 97.9 0.00024 5.2E-09 51.1 11.1 88 154-243 7-94 (100)
156 PF05843 Suf: Suppressor of fo 97.9 0.00033 7.1E-09 62.0 13.6 129 115-245 3-135 (280)
157 PF05843 Suf: Suppressor of fo 97.9 0.00049 1.1E-08 60.9 14.5 144 290-438 2-148 (280)
158 PF01535 PPR: PPR repeat; Int 97.9 1.4E-05 3.1E-10 44.0 3.1 29 327-355 2-30 (31)
159 PRK15363 pathogenicity island 97.9 0.001 2.3E-08 51.8 14.0 102 216-321 34-135 (157)
160 PF08579 RPM2: Mitochondrial r 97.9 0.00025 5.5E-09 51.1 9.6 76 223-300 31-115 (120)
161 cd00189 TPR Tetratricopeptide 97.8 0.00028 6.1E-09 50.7 10.4 91 220-314 3-93 (100)
162 PF04840 Vps16_C: Vps16, C-ter 97.8 0.022 4.8E-07 51.1 25.9 125 291-442 179-303 (319)
163 PF06239 ECSIT: Evolutionarily 97.8 0.00046 1E-08 56.3 11.5 107 321-446 43-154 (228)
164 PLN03088 SGT1, suppressor of 97.8 0.00088 1.9E-08 61.6 14.9 89 297-388 10-98 (356)
165 PRK15363 pathogenicity island 97.8 0.0013 2.9E-08 51.2 12.8 89 190-282 43-131 (157)
166 PF14938 SNAP: Soluble NSF att 97.7 0.011 2.4E-07 52.6 20.6 169 116-315 38-222 (282)
167 PF12895 Apc3: Anaphase-promot 97.7 7.4E-05 1.6E-09 52.6 5.5 80 339-420 3-83 (84)
168 PF14559 TPR_19: Tetratricopep 97.7 0.00018 4E-09 48.2 6.9 64 124-189 2-65 (68)
169 PLN03088 SGT1, suppressor of 97.7 0.0018 3.9E-08 59.6 14.9 84 92-175 15-98 (356)
170 KOG1130 Predicted G-alpha GTPa 97.6 0.0013 2.8E-08 58.7 12.7 133 255-387 196-342 (639)
171 PRK02603 photosystem I assembl 97.6 0.0048 1E-07 50.3 15.7 83 149-232 37-121 (172)
172 KOG0553 TPR repeat-containing 97.6 0.0011 2.3E-08 56.8 11.7 101 298-403 90-190 (304)
173 PF06239 ECSIT: Evolutionarily 97.6 0.0013 2.8E-08 53.8 11.5 105 179-304 44-153 (228)
174 COG4700 Uncharacterized protei 97.6 0.011 2.4E-07 47.0 16.1 125 287-416 87-214 (251)
175 CHL00033 ycf3 photosystem I as 97.6 0.0021 4.5E-08 52.3 12.9 64 291-354 37-101 (168)
176 PF12895 Apc3: Anaphase-promot 97.6 0.0002 4.2E-09 50.5 6.0 79 197-279 3-83 (84)
177 PRK10866 outer membrane biogen 97.6 0.039 8.5E-07 47.7 21.9 55 366-420 181-237 (243)
178 KOG0550 Molecular chaperone (D 97.6 0.025 5.4E-07 50.9 19.6 163 218-388 169-349 (486)
179 PRK02603 photosystem I assembl 97.6 0.007 1.5E-07 49.4 15.8 86 292-378 38-124 (172)
180 PRK10153 DNA-binding transcrip 97.6 0.0067 1.5E-07 58.4 17.8 146 212-389 332-482 (517)
181 PF14559 TPR_19: Tetratricopep 97.6 0.00029 6.3E-09 47.2 6.3 49 197-245 5-53 (68)
182 PRK10153 DNA-binding transcrip 97.6 0.0084 1.8E-07 57.8 18.0 143 178-323 333-487 (517)
183 COG3898 Uncharacterized membra 97.5 0.059 1.3E-06 48.2 29.9 314 90-424 64-392 (531)
184 PF14938 SNAP: Soluble NSF att 97.5 0.0062 1.3E-07 54.2 15.8 34 197-244 29-62 (282)
185 CHL00033 ycf3 photosystem I as 97.5 0.0054 1.2E-07 49.8 13.8 63 113-175 35-100 (168)
186 PF13432 TPR_16: Tetratricopep 97.5 0.00053 1.1E-08 45.5 6.5 58 119-176 3-60 (65)
187 KOG2796 Uncharacterized conser 97.5 0.005 1.1E-07 51.7 13.2 154 164-329 166-323 (366)
188 PF13432 TPR_16: Tetratricopep 97.5 0.0011 2.3E-08 43.9 7.8 55 225-282 5-59 (65)
189 PF13414 TPR_11: TPR repeat; P 97.5 0.00097 2.1E-08 44.8 7.7 64 216-282 2-66 (69)
190 PF12688 TPR_5: Tetratrico pep 97.4 0.012 2.7E-07 44.1 13.7 53 122-174 10-65 (120)
191 PF13414 TPR_11: TPR repeat; P 97.4 0.00086 1.9E-08 45.1 7.0 64 112-175 2-66 (69)
192 PF13525 YfiO: Outer membrane 97.4 0.07 1.5E-06 44.8 20.2 60 224-283 12-71 (203)
193 PF12688 TPR_5: Tetratrico pep 97.3 0.016 3.6E-07 43.5 13.3 100 90-193 12-117 (120)
194 KOG1130 Predicted G-alpha GTPa 97.3 0.0047 1E-07 55.2 11.7 134 290-423 196-343 (639)
195 KOG2041 WD40 repeat protein [G 97.3 0.19 4.1E-06 48.6 24.2 312 109-446 688-1073(1189)
196 PRK10803 tol-pal system protei 97.3 0.0075 1.6E-07 52.5 12.8 87 197-283 157-246 (263)
197 PF07079 DUF1347: Protein of u 97.3 0.15 3.2E-06 46.8 30.8 100 93-194 59-179 (549)
198 KOG0553 TPR repeat-containing 97.2 0.0032 7E-08 54.0 9.9 97 92-190 94-190 (304)
199 PF13525 YfiO: Outer membrane 97.2 0.096 2.1E-06 44.0 21.0 62 115-176 7-71 (203)
200 PF12921 ATP13: Mitochondrial 97.2 0.0053 1.2E-07 46.6 10.1 100 216-337 1-100 (126)
201 COG4235 Cytochrome c biogenesi 97.2 0.016 3.5E-07 50.0 14.1 130 129-263 138-269 (287)
202 COG4235 Cytochrome c biogenesi 97.2 0.029 6.3E-07 48.5 15.3 113 179-297 153-268 (287)
203 PF12921 ATP13: Mitochondrial 97.1 0.016 3.4E-07 44.0 11.8 57 390-446 47-104 (126)
204 KOG2280 Vacuolar assembly/sort 97.1 0.3 6.6E-06 47.6 24.9 319 75-419 426-794 (829)
205 PF03704 BTAD: Bacterial trans 97.1 0.0039 8.4E-08 49.3 8.8 70 115-184 64-138 (146)
206 PF04840 Vps16_C: Vps16, C-ter 97.1 0.2 4.3E-06 45.1 26.8 261 115-421 2-263 (319)
207 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.24 5.2E-06 45.4 26.4 140 140-282 35-189 (660)
208 PRK10803 tol-pal system protei 97.1 0.015 3.3E-07 50.6 12.6 97 147-246 143-246 (263)
209 PF13371 TPR_9: Tetratricopept 97.1 0.0045 9.8E-08 42.0 7.6 63 120-184 2-64 (73)
210 KOG1538 Uncharacterized conser 97.0 0.085 1.8E-06 50.3 16.9 56 216-282 746-801 (1081)
211 COG4105 ComL DNA uptake lipopr 96.9 0.22 4.7E-06 42.4 20.2 178 119-314 40-229 (254)
212 PF13371 TPR_9: Tetratricopept 96.9 0.007 1.5E-07 41.1 7.4 57 225-284 3-59 (73)
213 COG4700 Uncharacterized protei 96.9 0.17 3.7E-06 40.5 18.5 137 248-387 84-220 (251)
214 KOG0550 Molecular chaperone (D 96.9 0.34 7.5E-06 43.9 20.6 255 93-355 63-351 (486)
215 PF03704 BTAD: Bacterial trans 96.8 0.013 2.8E-07 46.3 9.5 68 328-396 65-137 (146)
216 KOG2796 Uncharacterized conser 96.8 0.28 6E-06 41.7 23.5 140 256-399 179-323 (366)
217 KOG1538 Uncharacterized conser 96.7 0.34 7.4E-06 46.5 18.4 86 328-424 750-846 (1081)
218 COG3118 Thioredoxin domain-con 96.6 0.3 6.5E-06 42.4 16.6 125 119-245 140-264 (304)
219 smart00299 CLH Clathrin heavy 96.5 0.26 5.5E-06 38.5 14.8 43 118-160 12-54 (140)
220 PF13281 DUF4071: Domain of un 96.5 0.65 1.4E-05 42.4 20.7 78 222-299 146-227 (374)
221 PF04053 Coatomer_WDAD: Coatom 96.5 0.11 2.4E-06 49.0 14.5 155 125-314 273-427 (443)
222 KOG2610 Uncharacterized conser 96.5 0.23 4.9E-06 43.7 14.9 151 229-385 115-272 (491)
223 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.1 2.2E-06 48.2 13.7 68 109-176 71-141 (453)
224 COG3898 Uncharacterized membra 96.4 0.72 1.6E-05 41.7 34.1 286 90-388 95-391 (531)
225 PF04053 Coatomer_WDAD: Coatom 96.4 0.14 3E-06 48.4 14.5 167 79-279 261-427 (443)
226 PRK15331 chaperone protein Sic 96.4 0.14 3.1E-06 40.3 12.1 88 298-388 46-133 (165)
227 COG1729 Uncharacterized protei 96.3 0.084 1.8E-06 45.2 11.5 98 184-283 144-244 (262)
228 PF09205 DUF1955: Domain of un 96.3 0.23 5E-06 37.3 12.1 140 228-392 13-152 (161)
229 PRK15331 chaperone protein Sic 96.3 0.12 2.5E-06 40.8 11.1 96 80-175 33-133 (165)
230 PF13424 TPR_12: Tetratricopep 96.3 0.016 3.5E-07 39.9 6.0 61 114-174 6-73 (78)
231 PF13424 TPR_12: Tetratricopep 96.3 0.017 3.6E-07 39.8 6.0 63 218-280 6-72 (78)
232 KOG3941 Intermediate in Toll s 96.3 0.055 1.2E-06 46.2 9.9 106 322-446 64-174 (406)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.099 2.1E-06 48.4 12.2 65 287-354 73-141 (453)
234 PF10300 DUF3808: Protein of u 96.2 0.23 4.9E-06 47.7 15.3 87 197-283 247-334 (468)
235 PRK11906 transcriptional regul 96.2 0.61 1.3E-05 43.4 17.1 97 250-349 334-431 (458)
236 KOG1258 mRNA processing protei 96.1 1.5 3.1E-05 42.1 34.3 118 93-211 59-179 (577)
237 KOG0543 FKBP-type peptidyl-pro 96.0 0.14 3E-06 46.3 11.7 106 154-283 215-320 (397)
238 PRK11906 transcriptional regul 95.9 0.52 1.1E-05 43.8 15.4 120 232-354 273-401 (458)
239 KOG3941 Intermediate in Toll s 95.9 0.11 2.3E-06 44.5 10.0 88 286-374 64-172 (406)
240 COG3118 Thioredoxin domain-con 95.9 1 2.2E-05 39.2 16.5 166 66-234 120-289 (304)
241 PF13428 TPR_14: Tetratricopep 95.9 0.032 6.9E-07 33.3 5.3 41 218-261 2-42 (44)
242 PF08631 SPO22: Meiosis protei 95.9 1.2 2.5E-05 39.6 26.0 122 124-246 4-150 (278)
243 KOG1585 Protein required for f 95.8 1 2.2E-05 38.0 15.7 26 149-174 33-58 (308)
244 COG4785 NlpI Lipoprotein NlpI, 95.7 0.95 2E-05 37.4 15.4 183 93-283 79-266 (297)
245 KOG0543 FKBP-type peptidyl-pro 95.7 0.24 5.2E-06 44.9 11.8 95 184-282 259-354 (397)
246 KOG1941 Acetylcholine receptor 95.7 0.82 1.8E-05 40.9 14.6 226 197-422 20-273 (518)
247 PF13281 DUF4071: Domain of un 95.6 1.8 3.8E-05 39.7 20.9 82 145-227 139-227 (374)
248 COG3629 DnrI DNA-binding trans 95.5 0.2 4.4E-06 43.6 10.7 78 114-191 154-236 (280)
249 PF13512 TPR_18: Tetratricopep 95.5 0.6 1.3E-05 36.0 11.9 57 228-284 21-77 (142)
250 COG1729 Uncharacterized protei 95.5 0.34 7.4E-06 41.6 11.7 103 115-219 144-251 (262)
251 smart00299 CLH Clathrin heavy 95.4 0.92 2E-05 35.3 14.6 86 150-243 10-95 (140)
252 PF13512 TPR_18: Tetratricopep 95.4 0.61 1.3E-05 36.0 11.7 81 115-195 12-95 (142)
253 PF13428 TPR_14: Tetratricopep 95.4 0.06 1.3E-06 32.1 5.2 39 115-153 3-41 (44)
254 PF04184 ST7: ST7 protein; In 95.2 2.8 6E-05 39.5 18.1 164 118-296 173-338 (539)
255 KOG1920 IkappaB kinase complex 95.2 4.7 0.0001 42.1 25.1 133 260-421 914-1052(1265)
256 KOG1941 Acetylcholine receptor 95.0 1.2 2.6E-05 39.9 13.6 231 157-388 16-274 (518)
257 PF10300 DUF3808: Protein of u 95.0 3.6 7.9E-05 39.6 24.6 119 230-353 246-375 (468)
258 PF13170 DUF4003: Protein of u 94.9 2.7 5.8E-05 37.5 19.9 132 270-403 78-225 (297)
259 KOG2280 Vacuolar assembly/sort 94.9 4.5 9.7E-05 40.0 29.4 315 108-446 427-786 (829)
260 KOG1920 IkappaB kinase complex 94.8 6.1 0.00013 41.4 21.6 33 108-141 786-820 (1265)
261 KOG4555 TPR repeat-containing 94.8 0.7 1.5E-05 34.7 10.0 89 335-425 53-145 (175)
262 KOG2114 Vacuolar assembly/sort 94.8 5 0.00011 40.3 24.9 73 366-446 711-787 (933)
263 PF07035 Mic1: Colon cancer-as 94.8 1.7 3.7E-05 34.7 15.5 115 317-446 21-136 (167)
264 KOG4555 TPR repeat-containing 94.7 1.3 2.9E-05 33.3 11.4 88 90-177 54-145 (175)
265 COG3629 DnrI DNA-binding trans 94.7 0.41 8.9E-06 41.7 10.2 78 218-298 154-236 (280)
266 KOG2610 Uncharacterized conser 94.7 2.9 6.2E-05 37.2 19.0 150 91-242 115-272 (491)
267 KOG2041 WD40 repeat protein [G 94.7 4.7 0.0001 39.6 24.2 133 86-241 741-876 (1189)
268 KOG2114 Vacuolar assembly/sort 94.7 0.9 2E-05 45.2 13.3 243 150-424 337-590 (933)
269 PF07079 DUF1347: Protein of u 94.7 3.7 8E-05 38.1 23.9 138 122-266 15-179 (549)
270 COG4105 ComL DNA uptake lipopr 94.6 2.6 5.7E-05 36.0 21.8 184 180-388 33-232 (254)
271 KOG1550 Extracellular protein 94.5 5.4 0.00012 39.4 24.0 278 129-425 228-539 (552)
272 COG0457 NrfG FOG: TPR repeat [ 94.3 2.9 6.3E-05 35.3 29.4 203 217-424 59-265 (291)
273 PF09205 DUF1955: Domain of un 94.2 1.8 4E-05 32.7 14.0 64 291-356 88-151 (161)
274 PF09613 HrpB1_HrpK: Bacterial 94.0 2.5 5.3E-05 33.4 12.7 71 123-195 20-90 (160)
275 PF08631 SPO22: Meiosis protei 93.7 4.8 0.0001 35.7 25.7 164 256-421 86-272 (278)
276 COG0457 NrfG FOG: TPR repeat [ 93.6 4 8.6E-05 34.4 29.6 223 161-389 37-265 (291)
277 COG3947 Response regulator con 93.5 4.7 0.0001 35.1 14.2 72 362-434 281-357 (361)
278 TIGR02561 HrpB1_HrpK type III 93.5 2.7 5.8E-05 32.6 11.2 52 125-176 22-73 (153)
279 KOG1550 Extracellular protein 93.3 9.1 0.0002 37.9 17.8 16 375-390 379-394 (552)
280 PF10602 RPN7: 26S proteasome 93.2 2.3 4.9E-05 34.7 11.3 97 148-245 37-141 (177)
281 PF10602 RPN7: 26S proteasome 93.1 1.9 4.1E-05 35.2 10.7 64 218-282 37-101 (177)
282 PF07035 Mic1: Colon cancer-as 93.1 3.8 8.3E-05 32.8 14.1 23 257-279 92-114 (167)
283 COG4649 Uncharacterized protei 92.8 4.2 9.1E-05 32.5 16.0 138 113-253 59-202 (221)
284 KOG2066 Vacuolar assembly/sort 92.6 12 0.00026 37.4 26.2 155 120-283 363-534 (846)
285 PF02284 COX5A: Cytochrome c o 92.5 1.9 4.1E-05 30.9 8.4 59 165-224 28-86 (108)
286 PF09613 HrpB1_HrpK: Bacterial 92.5 4.4 9.6E-05 32.0 12.3 53 300-354 21-73 (160)
287 COG1747 Uncharacterized N-term 92.4 10 0.00022 36.0 20.4 181 108-297 61-247 (711)
288 KOG0276 Vesicle coat complex C 92.4 1.4 3E-05 42.2 9.9 150 229-421 598-747 (794)
289 COG4649 Uncharacterized protei 92.3 4.9 0.00011 32.1 16.0 131 80-211 58-195 (221)
290 PF13176 TPR_7: Tetratricopept 92.2 0.37 8.1E-06 27.1 4.0 24 220-243 2-25 (36)
291 PF13431 TPR_17: Tetratricopep 91.9 0.28 6.1E-06 27.2 3.2 24 109-132 9-32 (34)
292 PF13431 TPR_17: Tetratricopep 91.9 0.16 3.5E-06 28.2 2.2 33 136-168 2-34 (34)
293 PF04184 ST7: ST7 protein; In 91.9 12 0.00025 35.6 18.0 53 262-314 267-320 (539)
294 PF13170 DUF4003: Protein of u 91.8 9.1 0.0002 34.2 20.9 131 163-296 78-224 (297)
295 PF13176 TPR_7: Tetratricopept 91.7 0.45 9.8E-06 26.8 4.0 23 116-138 2-24 (36)
296 cd00923 Cyt_c_Oxidase_Va Cytoc 91.7 3.6 7.7E-05 29.2 8.9 62 162-224 22-83 (103)
297 KOG4570 Uncharacterized conser 91.5 1.8 3.9E-05 38.0 8.9 107 282-390 57-165 (418)
298 PRK15180 Vi polysaccharide bio 91.3 13 0.00028 35.0 25.4 112 66-177 310-421 (831)
299 KOG0890 Protein kinase of the 90.8 36 0.00077 39.1 27.5 145 90-241 1394-1542(2382)
300 PF13929 mRNA_stabil: mRNA sta 90.7 11 0.00024 33.1 15.8 117 232-349 143-262 (292)
301 KOG4570 Uncharacterized conser 90.7 2.6 5.6E-05 37.1 9.1 128 223-355 25-165 (418)
302 COG4785 NlpI Lipoprotein NlpI, 90.6 9.1 0.0002 31.9 15.6 83 127-211 79-161 (297)
303 PF02284 COX5A: Cytochrome c o 90.3 3.8 8.2E-05 29.4 8.1 60 272-333 28-87 (108)
304 PF00515 TPR_1: Tetratricopept 89.9 1.2 2.7E-05 24.3 4.7 28 218-245 2-29 (34)
305 PF00637 Clathrin: Region in C 89.8 0.051 1.1E-06 42.7 -1.6 49 335-383 17-65 (143)
306 PF11207 DUF2989: Protein of u 89.7 3.6 7.8E-05 33.9 8.8 77 157-236 117-197 (203)
307 PF08424 NRDE-2: NRDE-2, neces 89.6 16 0.00035 33.3 16.1 28 297-324 162-189 (321)
308 KOG1258 mRNA processing protei 89.3 22 0.00048 34.5 29.1 307 109-424 41-395 (577)
309 PF07719 TPR_2: Tetratricopept 89.3 1.4 3.1E-05 24.0 4.6 28 219-246 3-30 (34)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 88.9 4.9 0.00011 28.5 7.7 63 269-333 22-84 (103)
311 KOG0403 Neoplastic transformat 88.9 20 0.00044 33.5 18.2 93 365-462 514-616 (645)
312 COG4455 ImpE Protein of avirul 88.8 3.2 7E-05 34.5 7.9 76 220-298 4-81 (273)
313 COG5159 RPN6 26S proteasome re 88.1 13 0.00027 32.5 11.2 141 295-436 9-170 (421)
314 PF06552 TOM20_plant: Plant sp 87.8 3.2 6.9E-05 33.4 7.1 85 213-299 21-123 (186)
315 KOG1585 Protein required for f 87.7 17 0.00036 31.1 15.6 26 115-140 33-58 (308)
316 PF00515 TPR_1: Tetratricopept 87.5 1.8 3.8E-05 23.7 4.3 27 149-175 3-29 (34)
317 PF02259 FAT: FAT domain; Int 87.3 24 0.00052 32.5 22.7 63 253-315 145-210 (352)
318 PF13374 TPR_10: Tetratricopep 87.3 1.7 3.6E-05 25.0 4.3 28 218-245 3-30 (42)
319 PF11207 DUF2989: Protein of u 86.9 7.6 0.00016 32.1 9.0 73 342-415 123-198 (203)
320 PRK15180 Vi polysaccharide bio 86.8 28 0.00061 32.9 13.4 119 124-244 300-418 (831)
321 PF08424 NRDE-2: NRDE-2, neces 86.7 25 0.00054 32.0 16.2 22 136-157 8-29 (321)
322 PF13374 TPR_10: Tetratricopep 86.4 2 4.3E-05 24.7 4.3 27 114-140 3-29 (42)
323 KOG4234 TPR repeat-containing 86.4 17 0.00038 29.9 11.0 89 335-425 105-198 (271)
324 PF07719 TPR_2: Tetratricopept 86.3 2.5 5.4E-05 22.9 4.5 26 150-175 4-29 (34)
325 KOG2471 TPR repeat-containing 86.3 28 0.0006 33.0 13.1 146 296-446 213-385 (696)
326 TIGR02561 HrpB1_HrpK type III 86.3 14 0.0003 28.8 11.7 53 301-355 22-74 (153)
327 PF13762 MNE1: Mitochondrial s 85.2 14 0.00029 28.9 9.2 82 114-195 40-128 (145)
328 PF13174 TPR_6: Tetratricopept 85.2 2.2 4.7E-05 22.9 3.8 26 221-246 4-29 (33)
329 KOG1464 COP9 signalosome, subu 85.1 25 0.00053 30.5 18.6 265 75-350 20-328 (440)
330 PF04097 Nic96: Nup93/Nic96; 85.0 45 0.00098 33.6 16.9 62 114-176 113-181 (613)
331 KOG2066 Vacuolar assembly/sort 84.5 49 0.0011 33.5 24.5 147 92-245 369-533 (846)
332 TIGR03504 FimV_Cterm FimV C-te 84.3 2.8 6.1E-05 24.9 4.0 24 401-424 5-28 (44)
333 PF00637 Clathrin: Region in C 84.1 0.53 1.2E-05 36.8 1.3 53 154-207 14-66 (143)
334 COG3947 Response regulator con 83.9 30 0.00064 30.5 17.4 57 256-313 281-337 (361)
335 KOG4077 Cytochrome c oxidase, 83.8 7.2 0.00016 29.2 6.7 58 165-223 67-124 (149)
336 TIGR02508 type_III_yscG type I 83.6 12 0.00027 26.8 7.5 13 158-170 50-62 (115)
337 COG4455 ImpE Protein of avirul 83.5 8.7 0.00019 32.1 7.8 54 153-208 7-60 (273)
338 PRK14956 DNA polymerase III su 83.0 19 0.00041 34.6 11.0 93 71-183 192-284 (484)
339 KOG0276 Vesicle coat complex C 82.9 38 0.00081 33.2 12.6 100 228-351 648-747 (794)
340 KOG4648 Uncharacterized conser 82.8 6.7 0.00014 35.1 7.4 88 297-388 105-193 (536)
341 KOG4234 TPR repeat-containing 82.4 22 0.00048 29.4 9.5 57 332-389 141-197 (271)
342 KOG4648 Uncharacterized conser 82.2 7.6 0.00017 34.7 7.5 94 261-359 104-197 (536)
343 COG5159 RPN6 26S proteasome re 81.9 35 0.00076 29.9 13.2 137 262-398 11-167 (421)
344 PF13181 TPR_8: Tetratricopept 81.8 4.7 0.0001 21.9 4.3 27 219-245 3-29 (34)
345 KOG1464 COP9 signalosome, subu 81.7 34 0.00074 29.7 22.6 137 108-245 21-173 (440)
346 COG2976 Uncharacterized protei 81.4 29 0.00062 28.6 12.7 89 296-390 96-189 (207)
347 TIGR03504 FimV_Cterm FimV C-te 81.1 4.3 9.4E-05 24.1 4.0 24 153-176 5-28 (44)
348 PF10366 Vps39_1: Vacuolar sor 81.0 12 0.00027 27.5 7.3 27 397-423 41-67 (108)
349 PF11848 DUF3368: Domain of un 80.4 7.2 0.00016 23.6 5.0 34 405-438 12-45 (48)
350 TIGR02508 type_III_yscG type I 79.8 20 0.00043 25.8 8.2 85 270-363 21-105 (115)
351 PF06552 TOM20_plant: Plant sp 79.3 13 0.00028 30.1 7.3 85 108-194 20-125 (186)
352 KOG4507 Uncharacterized conser 79.2 6.5 0.00014 37.8 6.5 47 197-243 656-702 (886)
353 PF13181 TPR_8: Tetratricopept 79.2 6.3 0.00014 21.3 4.2 25 150-174 4-28 (34)
354 PF07721 TPR_4: Tetratricopept 78.7 3.4 7.4E-05 21.0 2.8 20 400-419 6-25 (26)
355 PF13174 TPR_6: Tetratricopept 78.6 3.7 7.9E-05 22.0 3.1 23 153-175 6-28 (33)
356 PF13762 MNE1: Mitochondrial s 78.4 30 0.00065 27.0 10.7 53 394-446 78-131 (145)
357 PF09477 Type_III_YscG: Bacter 77.8 24 0.00053 25.7 8.7 39 128-166 21-59 (116)
358 PF02259 FAT: FAT domain; Int 77.5 58 0.0013 29.9 24.4 71 213-284 142-214 (352)
359 PF10579 Rapsyn_N: Rapsyn N-te 77.1 8.6 0.00019 26.2 4.9 46 372-417 18-65 (80)
360 cd00280 TRFH Telomeric Repeat 77.0 26 0.00057 28.4 8.3 64 129-195 85-156 (200)
361 KOG2063 Vacuolar assembly/sort 76.8 1E+02 0.0022 32.3 14.5 118 219-337 506-638 (877)
362 PF07575 Nucleopor_Nup85: Nup8 76.4 87 0.0019 31.3 15.4 110 325-436 405-536 (566)
363 PF09477 Type_III_YscG: Bacter 76.1 28 0.0006 25.4 8.9 80 93-177 20-99 (116)
364 KOG2063 Vacuolar assembly/sort 75.8 1.1E+02 0.0023 32.1 21.8 130 150-301 507-638 (877)
365 PF10255 Paf67: RNA polymerase 75.8 62 0.0013 30.4 11.7 62 220-281 125-191 (404)
366 PF07163 Pex26: Pex26 protein; 75.1 43 0.00094 29.3 9.7 88 294-383 88-181 (309)
367 COG2909 MalT ATP-dependent tra 75.0 1.1E+02 0.0023 31.7 29.6 220 197-420 429-684 (894)
368 KOG2396 HAT (Half-A-TPR) repea 73.1 90 0.002 30.0 20.0 97 287-387 457-557 (568)
369 PF10579 Rapsyn_N: Rapsyn N-te 72.9 11 0.00023 25.7 4.6 17 293-309 47-63 (80)
370 cd00280 TRFH Telomeric Repeat 72.8 50 0.0011 26.9 9.0 21 368-388 119-139 (200)
371 PF04097 Nic96: Nup93/Nic96; 72.7 1.1E+02 0.0024 30.9 15.7 42 188-230 117-158 (613)
372 KOG4279 Serine/threonine prote 72.5 92 0.002 31.6 12.2 114 131-251 181-318 (1226)
373 PF14689 SPOB_a: Sensor_kinase 72.2 11 0.00023 24.4 4.4 46 376-423 6-51 (62)
374 PF09797 NatB_MDM20: N-acetylt 71.7 30 0.00065 32.2 9.1 125 115-241 182-310 (365)
375 KOG4077 Cytochrome c oxidase, 69.7 39 0.00084 25.5 7.1 46 343-388 67-112 (149)
376 PRK12798 chemotaxis protein; R 68.6 1E+02 0.0023 28.8 21.7 197 160-359 125-329 (421)
377 PF11846 DUF3366: Domain of un 68.0 33 0.00071 28.4 7.7 31 322-352 141-171 (193)
378 cd08819 CARD_MDA5_2 Caspase ac 67.9 39 0.00084 23.6 6.7 65 132-202 21-85 (88)
379 cd08819 CARD_MDA5_2 Caspase ac 67.7 39 0.00085 23.6 7.6 35 372-411 48-82 (88)
380 PRK09687 putative lyase; Provi 67.5 91 0.002 27.7 29.7 235 179-441 34-278 (280)
381 PRK10564 maltose regulon perip 67.4 12 0.00025 33.1 4.9 39 397-435 259-297 (303)
382 PF07163 Pex26: Pex26 protein; 67.0 90 0.0019 27.5 10.2 88 223-312 89-181 (309)
383 PHA02875 ankyrin repeat protei 66.4 90 0.0019 29.6 11.3 206 193-430 10-230 (413)
384 KOG2396 HAT (Half-A-TPR) repea 65.9 1.3E+02 0.0028 29.0 34.3 79 98-176 90-169 (568)
385 PF11846 DUF3366: Domain of un 65.7 36 0.00079 28.1 7.5 49 197-245 122-172 (193)
386 PF11848 DUF3368: Domain of un 65.7 28 0.0006 21.1 5.0 34 157-190 12-45 (48)
387 KOG0991 Replication factor C, 65.6 87 0.0019 26.8 12.5 46 145-192 237-282 (333)
388 KOG2297 Predicted translation 65.1 1E+02 0.0022 27.5 14.3 19 291-309 323-341 (412)
389 PF11663 Toxin_YhaV: Toxin wit 65.1 7.2 0.00016 29.7 2.8 29 409-439 109-137 (140)
390 PF11663 Toxin_YhaV: Toxin wit 64.7 8.1 0.00018 29.4 3.0 28 374-403 109-136 (140)
391 PF13929 mRNA_stabil: mRNA sta 64.5 1E+02 0.0022 27.3 22.8 87 356-442 198-290 (292)
392 COG0790 FOG: TPR repeat, SEL1 63.6 1.1E+02 0.0024 27.2 22.7 86 342-434 172-276 (292)
393 KOG1308 Hsp70-interacting prot 63.4 12 0.00026 33.6 4.2 91 337-430 126-217 (377)
394 COG1747 Uncharacterized N-term 63.2 1.5E+02 0.0032 28.7 26.0 166 181-355 65-235 (711)
395 PRK10564 maltose regulon perip 63.2 19 0.00041 31.9 5.4 28 257-284 260-287 (303)
396 PF02847 MA3: MA3 domain; Int 62.9 34 0.00074 25.2 6.3 23 329-351 6-28 (113)
397 smart00777 Mad3_BUB1_I Mad3/BU 62.8 39 0.00085 25.6 6.4 41 236-277 82-122 (125)
398 smart00028 TPR Tetratricopepti 62.6 14 0.00031 18.6 3.3 25 150-174 4-28 (34)
399 PF08311 Mad3_BUB1_I: Mad3/BUB 62.4 67 0.0015 24.4 8.7 42 131-172 81-124 (126)
400 PRK10941 hypothetical protein; 62.3 93 0.002 27.4 9.6 60 150-211 184-243 (269)
401 PF09868 DUF2095: Uncharacteri 62.1 34 0.00074 25.1 5.5 33 119-151 67-99 (128)
402 PF14689 SPOB_a: Sensor_kinase 61.7 16 0.00034 23.7 3.6 24 364-387 27-50 (62)
403 PRK07764 DNA polymerase III su 61.3 2.2E+02 0.0048 30.0 16.0 28 151-179 252-279 (824)
404 KOG2659 LisH motif-containing 61.0 1E+02 0.0022 26.2 9.0 97 286-385 23-128 (228)
405 COG5187 RPN7 26S proteasome re 59.8 1.3E+02 0.0027 26.7 13.8 69 289-357 115-187 (412)
406 KOG0686 COP9 signalosome, subu 59.5 1.5E+02 0.0033 27.6 14.7 63 219-282 152-215 (466)
407 KOG1114 Tripeptidyl peptidase 59.3 2.4E+02 0.0052 29.8 15.5 50 289-338 1231-1280(1304)
408 PF09454 Vps23_core: Vps23 cor 58.6 29 0.00064 22.7 4.4 51 392-443 5-55 (65)
409 COG2178 Predicted RNA-binding 58.2 1E+02 0.0022 25.5 8.1 24 151-174 33-56 (204)
410 KOG4642 Chaperone-dependent E3 58.0 1.2E+02 0.0027 26.0 10.7 114 127-242 24-142 (284)
411 PRK07003 DNA polymerase III su 57.8 2.4E+02 0.0052 29.3 14.3 34 72-105 191-224 (830)
412 COG0735 Fur Fe2+/Zn2+ uptake r 57.4 65 0.0014 25.2 7.1 59 385-444 11-69 (145)
413 PRK13342 recombination factor 57.0 1.8E+02 0.0039 27.7 16.3 32 160-191 243-274 (413)
414 PRK08691 DNA polymerase III su 56.5 1.8E+02 0.0038 29.8 11.3 33 72-104 191-223 (709)
415 PRK14951 DNA polymerase III su 56.5 1.9E+02 0.0041 29.2 11.6 35 146-181 250-284 (618)
416 PRK09857 putative transposase; 56.3 98 0.0021 27.7 8.9 66 363-429 209-274 (292)
417 PF12862 Apc5: Anaphase-promot 56.3 70 0.0015 22.7 6.9 22 153-174 47-68 (94)
418 KOG0687 26S proteasome regulat 55.1 1.6E+02 0.0035 26.6 16.5 95 291-387 106-208 (393)
419 KOG2297 Predicted translation 55.0 1.6E+02 0.0034 26.4 18.6 18 397-414 323-340 (412)
420 KOG1586 Protein required for f 54.5 1.4E+02 0.003 25.6 19.0 19 266-284 166-184 (288)
421 KOG3677 RNA polymerase I-assoc 54.4 1.8E+02 0.0039 27.3 9.9 61 220-281 238-299 (525)
422 PF11817 Foie-gras_1: Foie gra 54.2 83 0.0018 27.3 8.0 20 295-314 184-203 (247)
423 PF14669 Asp_Glu_race_2: Putat 53.8 1.3E+02 0.0028 24.9 14.0 183 212-420 3-206 (233)
424 COG4003 Uncharacterized protei 53.6 57 0.0012 22.3 5.1 30 119-148 37-66 (98)
425 PF09868 DUF2095: Uncharacteri 53.5 54 0.0012 24.1 5.3 42 152-194 66-107 (128)
426 KOG1308 Hsp70-interacting prot 52.9 12 0.00025 33.7 2.5 95 91-185 126-220 (377)
427 PF11838 ERAP1_C: ERAP1-like C 52.9 1.8E+02 0.0038 26.3 19.6 192 261-457 45-262 (324)
428 PF09454 Vps23_core: Vps23 cor 52.8 28 0.00062 22.8 3.7 49 111-159 6-54 (65)
429 smart00386 HAT HAT (Half-A-TPR 52.7 33 0.00071 17.8 4.2 13 130-142 4-16 (33)
430 KOG0991 Replication factor C, 52.7 1.5E+02 0.0033 25.5 12.7 86 316-405 185-282 (333)
431 PF12968 DUF3856: Domain of Un 52.6 98 0.0021 23.3 7.5 47 302-348 22-78 (144)
432 COG0735 Fur Fe2+/Zn2+ uptake r 52.3 88 0.0019 24.5 7.1 61 135-195 8-68 (145)
433 KOG1924 RhoA GTPase effector D 52.2 28 0.00062 35.0 5.0 17 253-269 837-853 (1102)
434 KOG0292 Vesicle coat complex C 51.8 1E+02 0.0022 31.9 8.7 162 77-279 591-752 (1202)
435 PRK14952 DNA polymerase III su 51.3 1.4E+02 0.0031 29.9 9.8 29 151-180 250-278 (584)
436 COG5108 RPO41 Mitochondrial DN 51.1 92 0.002 31.1 8.1 90 187-282 33-131 (1117)
437 PRK14956 DNA polymerase III su 50.7 2.5E+02 0.0053 27.3 12.8 36 359-394 247-282 (484)
438 TIGR02397 dnaX_nterm DNA polym 49.9 2.1E+02 0.0046 26.3 13.7 30 150-180 247-276 (355)
439 smart00544 MA3 Domain in DAP-5 49.8 1E+02 0.0022 22.7 10.3 60 329-390 6-67 (113)
440 PRK09687 putative lyase; Provi 49.7 1.9E+02 0.0041 25.7 27.6 219 110-353 34-262 (280)
441 PF08780 NTase_sub_bind: Nucle 49.7 1.1E+02 0.0024 23.1 7.5 23 399-421 63-85 (124)
442 PF10366 Vps39_1: Vacuolar sor 49.5 1E+02 0.0022 22.6 8.0 26 150-175 42-67 (108)
443 PF10475 DUF2450: Protein of u 49.3 2E+02 0.0043 25.8 10.2 24 222-245 132-155 (291)
444 PF11817 Foie-gras_1: Foie gra 49.1 1.4E+02 0.0031 25.8 8.7 57 258-314 182-243 (247)
445 KOG0686 COP9 signalosome, subu 49.1 2.3E+02 0.005 26.6 14.7 59 185-244 153-214 (466)
446 KOG2168 Cullins [Cell cycle co 49.0 2.4E+02 0.0052 29.2 10.9 64 187-251 330-393 (835)
447 PRK14136 recX recombination re 48.1 2.1E+02 0.0045 25.7 15.3 73 130-208 194-266 (309)
448 COG4003 Uncharacterized protei 48.0 67 0.0015 22.0 4.8 35 152-187 36-70 (98)
449 PRK14961 DNA polymerase III su 47.9 2.4E+02 0.0051 26.3 10.8 36 145-181 244-279 (363)
450 PRK14135 recX recombination re 47.4 2E+02 0.0043 25.3 16.1 49 307-357 90-138 (263)
451 KOG2034 Vacuolar sorting prote 47.0 3.6E+02 0.0078 28.2 28.9 291 119-446 364-677 (911)
452 KOG3807 Predicted membrane pro 46.8 2.2E+02 0.0049 25.8 12.6 61 223-284 281-341 (556)
453 KOG4642 Chaperone-dependent E3 46.8 1.9E+02 0.0041 25.0 11.0 115 93-208 24-142 (284)
454 PF02847 MA3: MA3 domain; Int 46.7 70 0.0015 23.5 5.6 63 364-428 6-70 (113)
455 PRK14971 DNA polymerase III su 46.6 2.1E+02 0.0046 29.0 10.3 31 74-104 195-225 (614)
456 PF11123 DNA_Packaging_2: DNA 46.4 65 0.0014 21.6 4.4 33 94-126 12-44 (82)
457 PF14853 Fis1_TPR_C: Fis1 C-te 46.3 71 0.0015 19.9 5.6 34 153-188 7-40 (53)
458 KOG4507 Uncharacterized conser 45.9 1.6E+02 0.0035 29.0 8.7 150 77-228 567-721 (886)
459 KOG1586 Protein required for f 45.9 2E+02 0.0042 24.8 22.5 21 336-356 165-185 (288)
460 PRK11619 lytic murein transgly 45.8 3.5E+02 0.0075 27.6 32.4 331 54-421 38-372 (644)
461 KOG0890 Protein kinase of the 45.7 5.9E+02 0.013 30.3 26.2 151 118-278 1388-1542(2382)
462 PRK12323 DNA polymerase III su 44.8 3.6E+02 0.0078 27.6 11.7 31 74-104 198-228 (700)
463 PF10345 Cohesin_load: Cohesin 44.8 3.5E+02 0.0076 27.4 32.0 182 97-280 39-251 (608)
464 COG2812 DnaX DNA polymerase II 44.7 2.1E+02 0.0045 28.1 9.5 40 68-107 187-226 (515)
465 PLN03025 replication factor C 44.7 2.4E+02 0.0053 25.6 14.7 34 148-182 226-259 (319)
466 PF04910 Tcf25: Transcriptiona 44.6 2.6E+02 0.0057 26.0 18.5 66 146-211 99-167 (360)
467 COG2976 Uncharacterized protei 44.6 1.8E+02 0.004 24.1 15.6 58 223-284 132-189 (207)
468 PRK14700 recombination factor 44.2 2.4E+02 0.0052 25.3 15.7 106 76-195 62-174 (300)
469 PF12862 Apc5: Anaphase-promot 44.1 1.1E+02 0.0025 21.6 7.7 17 299-315 51-67 (94)
470 PRK14962 DNA polymerase III su 44.1 3.1E+02 0.0068 26.7 14.7 34 150-184 247-280 (472)
471 COG0790 FOG: TPR repeat, SEL1 43.8 2.3E+02 0.0051 25.1 18.4 148 232-392 92-269 (292)
472 PRK06645 DNA polymerase III su 43.4 3.3E+02 0.0072 26.8 11.3 37 145-182 256-292 (507)
473 PRK14958 DNA polymerase III su 43.3 3.4E+02 0.0073 26.8 11.4 38 144-182 243-280 (509)
474 PF13934 ELYS: Nuclear pore co 43.2 2.1E+02 0.0046 24.5 11.8 118 328-456 79-197 (226)
475 COG5108 RPO41 Mitochondrial DN 43.1 3.7E+02 0.008 27.2 11.9 92 294-388 33-131 (1117)
476 PRK10941 hypothetical protein; 42.9 2.4E+02 0.0052 24.9 10.9 52 262-314 189-240 (269)
477 PF10345 Cohesin_load: Cohesin 42.6 3.8E+02 0.0082 27.2 35.0 195 109-315 26-251 (608)
478 PRK14970 DNA polymerase III su 42.1 2.9E+02 0.0063 25.7 10.7 40 148-189 236-275 (367)
479 PRK11639 zinc uptake transcrip 41.4 1.6E+02 0.0035 23.8 7.3 63 350-413 16-78 (169)
480 KOG0376 Serine-threonine phosp 41.4 81 0.0018 30.0 6.0 22 333-354 46-67 (476)
481 cd01041 Rubrerythrin Rubreryth 41.1 1.3E+02 0.0028 23.1 6.5 24 431-454 91-115 (134)
482 PRK09462 fur ferric uptake reg 41.0 1.7E+02 0.0037 22.9 7.2 61 350-411 7-68 (148)
483 PF08311 Mad3_BUB1_I: Mad3/BUB 41.0 1.6E+02 0.0035 22.4 10.1 43 235-278 81-123 (126)
484 PRK14960 DNA polymerase III su 40.4 4.2E+02 0.0092 27.1 11.2 33 72-104 190-222 (702)
485 PRK11639 zinc uptake transcrip 40.3 1.7E+02 0.0037 23.7 7.2 57 139-195 17-73 (169)
486 KOG1498 26S proteasome regulat 40.1 3.2E+02 0.0069 25.6 18.7 26 363-388 215-240 (439)
487 PF04190 DUF410: Protein of un 40.0 2.6E+02 0.0056 24.6 17.4 192 228-457 1-216 (260)
488 PF14561 TPR_20: Tetratricopep 39.9 1.3E+02 0.0029 21.2 8.9 35 250-284 18-52 (90)
489 PRK07003 DNA polymerase III su 39.5 4.7E+02 0.01 27.4 17.2 44 270-315 180-224 (830)
490 KOG0376 Serine-threonine phosp 39.1 75 0.0016 30.2 5.5 88 154-244 11-99 (476)
491 KOG3807 Predicted membrane pro 38.7 3E+02 0.0066 25.0 14.2 53 299-351 285-337 (556)
492 PF11123 DNA_Packaging_2: DNA 37.8 1.1E+02 0.0023 20.6 4.5 33 128-160 12-44 (82)
493 KOG1498 26S proteasome regulat 37.8 3.5E+02 0.0075 25.3 20.3 91 258-355 135-242 (439)
494 PF04090 RNA_pol_I_TF: RNA pol 37.7 1.9E+02 0.0041 24.1 7.1 53 218-272 42-94 (199)
495 cd08326 CARD_CASP9 Caspase act 37.6 1.4E+02 0.003 20.8 7.2 38 265-306 41-78 (84)
496 smart00777 Mad3_BUB1_I Mad3/BU 37.6 1.8E+02 0.004 22.1 8.8 41 166-207 82-123 (125)
497 KOG4567 GTPase-activating prot 37.5 2.1E+02 0.0046 25.7 7.5 70 345-419 263-342 (370)
498 cd07153 Fur_like Ferric uptake 37.2 83 0.0018 23.2 4.8 47 366-412 6-52 (116)
499 COG5191 Uncharacterized conser 37.1 1.1E+02 0.0024 27.4 5.8 78 108-186 102-180 (435)
500 PRK14963 DNA polymerase III su 36.9 4.2E+02 0.0091 26.1 11.6 34 147-181 242-275 (504)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.6e-60 Score=475.56 Aligned_cols=403 Identities=16% Similarity=0.222 Sum_probs=367.6
Q ss_pred hHHHHHHHHhcCC---hhhHHHHHhhCCCC-CCHHHHHHHHH--hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 012442 52 SARIICEILAHAS---SDDIESALACTGII-PTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGK 125 (463)
Q Consensus 52 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 125 (463)
....+....+... +.++...|...|+. ++...++.++. ...+..+.|..+|+.|.. ||..+|+.++.+|++
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHh
Confidence 3344444544433 34678888888865 44445555555 346889999999998874 999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHH
Q 012442 126 NGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204 (463)
Q Consensus 126 ~g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~ 204 (463)
.|+++.|.++|++|.+.|. |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++. |++++|.+
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~-G~~eeAl~ 528 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA-GQVAKAFG 528 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-cCHHHHHH
Confidence 9999999999999999997 789999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 012442 205 FLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 205 ~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (463)
+|++|.+ ++.||..+|+.+|.+|++.|++++|.++|++|... .|+.| |..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999987 99999999999999999999999999999999763 37889 788999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHH
Q 012442 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362 (463)
Q Consensus 283 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (463)
.|+.|+..+|+.+|.+|++.|++++|.++|++ |...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~e-M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD-MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999 68899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHH
Q 012442 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442 (463)
Q Consensus 363 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 442 (463)
|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhhhHHHHHHHHHhhcC
Q 012442 443 ESRSMRDIFDSLERRCKTSQ 462 (463)
Q Consensus 443 ~g~~a~~~~~~~~~~~~~~~ 462 (463)
.|+. +.+.+++++|.+.+
T Consensus 767 ~G~l--e~A~~l~~~M~k~G 784 (1060)
T PLN03218 767 KDDA--DVGLDLLSQAKEDG 784 (1060)
T ss_pred CCCH--HHHHHHHHHHHHcC
Confidence 9999 55555555555543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.2e-60 Score=473.35 Aligned_cols=358 Identities=19% Similarity=0.258 Sum_probs=274.5
Q ss_pred CCHHHHHHHHH--hccCCchHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCHHHHHHHH
Q 012442 79 PTPDLVHEVLQ--LSYDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIF 154 (463)
Q Consensus 79 ~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~li 154 (463)
|+..+|+.+|. ...++.+.|.++|+.|.+ |..||..+|+.+|.+|++.|++++|.++|++|.+.|+ ||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 77777777777 335777777777777766 7777777777777777777777777777777777775 5777777777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhcC
Q 012442 155 DSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK---IVDPDGDSFAILLEGWEKEG 231 (463)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g 231 (463)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++. |++++|.++|++|.. ++.||..+|++++.+|++.|
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~-G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS-GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 77777777777777777777777777777777777777777 777777777777753 56777777777777777777
Q ss_pred CHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 012442 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQL 311 (463)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 311 (463)
++++|.++|++|.+. |+.| +..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 594 ~ldeA~elf~~M~e~-gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 594 QVDRAKEVYQMIHEY-NIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CHHHHHHHHHHHHHc-CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 777777777777774 7777 66677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 012442 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391 (463)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 391 (463)
|+. |...|+.|+..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+
T Consensus 672 ~~e-M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 672 LQD-ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHH-HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 777 5667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 012442 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440 (463)
Q Consensus 392 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 440 (463)
.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|++++..|
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777776554
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.7e-57 Score=452.01 Aligned_cols=373 Identities=14% Similarity=0.139 Sum_probs=279.1
Q ss_pred hHHHHHhhC-CCCCCHHHHHHHHHhc--cCCchHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 012442 67 DIESALACT-GIIPTPDLVHEVLQLS--YDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142 (463)
Q Consensus 67 ~~~~~l~~~-~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 142 (463)
++...|... +..|+..+|+.++.++ .++.+.|.+++..+.+ |..||..+||.++.+|++.|++++|.++|++|.+
T Consensus 108 ~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~- 186 (697)
T PLN03081 108 ELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE- 186 (697)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-
Confidence 345555544 3567777777777733 4566677777776665 6777777777777777777777777777777754
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-----------------------------------HHHHHH
Q 012442 143 GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD-----------------------------------VVAVNS 187 (463)
Q Consensus 143 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----------------------------------~~~~~~ 187 (463)
++..+|++++.+|++.|++++|+++|++|.+.|+.|| ..+|++
T Consensus 187 --~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~ 264 (697)
T PLN03081 187 --RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264 (697)
T ss_pred --CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH
Confidence 4566677777777777777777777777766655555 445566
Q ss_pred HHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHcc
Q 012442 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267 (463)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~ 267 (463)
|+.+|++. |++++|.++|+.|.. +|..+||+++.+|++.|++++|.++|++|.+. |+.| |..+|+.++.+|++.
T Consensus 265 Li~~y~k~-g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g~~p-d~~t~~~ll~a~~~~ 338 (697)
T PLN03081 265 LIDMYSKC-GDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-GVSI-DQFTFSIMIRIFSRL 338 (697)
T ss_pred HHHHHHHC-CCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhc
Confidence 77777777 777777777777764 67778888888888888888888888888774 7777 667788888888888
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 012442 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347 (463)
Q Consensus 268 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 347 (463)
|++++|.+++..|.+.|+.||..+|+.|+++|++.|++++|.++|++| ..||..+||+||.+|++.|+.++|.++
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m-----~~~d~~t~n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM-----PRKNLISWNALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC-----CCCCeeeHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888888887788888888888888888888888888774 246778888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 012442 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE-NGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426 (463)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 426 (463)
|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++| ++
T Consensus 414 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~ 490 (697)
T PLN03081 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PF 490 (697)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CC
Confidence 88888888888888888888888888888888888888875 578888888888888888888888888877665 56
Q ss_pred ccCHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Q 012442 427 LIYEVTMHKLKKAFYNESRSMRDIFDSLERRC 458 (463)
Q Consensus 427 ~~~~~~~~~ll~~~~~~g~~a~~~~~~~~~~~ 458 (463)
.|+..+|+.|+.+|...|+. +.+..+.+++
T Consensus 491 ~p~~~~~~~Ll~a~~~~g~~--~~a~~~~~~l 520 (697)
T PLN03081 491 KPTVNMWAALLTACRIHKNL--ELGRLAAEKL 520 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCc--HHHHHHHHHH
Confidence 78888888888888888877 4444444444
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4e-56 Score=443.63 Aligned_cols=376 Identities=17% Similarity=0.204 Sum_probs=348.4
Q ss_pred hhHHHHHhhCCCCCCHHHHHHHHH--hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 012442 66 DDIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG 143 (463)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 143 (463)
.+++..+.+.|+.|+..+++.++. ...|+.+.|.++|+.|. .||..+||.+|.+|++.|++++|+++|++|.+.|
T Consensus 143 ~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~---~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g 219 (697)
T PLN03081 143 KAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP---ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG 219 (697)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC---CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 457888889999999999999999 55799999999999886 5899999999999999999999999999998776
Q ss_pred C-C-----------------------------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 012442 144 V-L-----------------------------------SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187 (463)
Q Consensus 144 ~-~-----------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 187 (463)
. + +..+|++|+.+|++.|++++|.++|++|. ++|..+||+
T Consensus 220 ~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~ 295 (697)
T PLN03081 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNS 295 (697)
T ss_pred CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHH
Confidence 4 3 34456888999999999999999999997 679999999
Q ss_pred HHHHHHccCCcHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHc
Q 012442 188 LLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266 (463)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~ 266 (463)
+|.+|++. |++++|+++|++|.+ |+.||..||++++.+|++.|++++|.+++..|.+. |+.| |..+|+.||.+|++
T Consensus 296 li~~y~~~-g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~-d~~~~~~Li~~y~k 372 (697)
T PLN03081 296 MLAGYALH-GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPL-DIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCC-CeeehHHHHHHHHH
Confidence 99999999 999999999999977 99999999999999999999999999999999996 9999 88999999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 012442 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346 (463)
Q Consensus 267 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 346 (463)
.|++++|.++|++|.+ ||..+|+.||.+|++.|+.++|.++|++ |...|+.||..||++++.+|++.|.+++|.+
T Consensus 373 ~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~-M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 373 WGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFER-MIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred CCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 9999999999999964 6889999999999999999999999999 6789999999999999999999999999999
Q ss_pred HHHHHHH-CCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 012442 347 FFHEMIK-NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425 (463)
Q Consensus 347 ~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 425 (463)
+|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+.
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~- 523 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM- 523 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC-
Confidence 9999986 699999999999999999999999999998765 68899999999999999999999999999999744
Q ss_pred Ccc-CHHHHHHHHHHHHHhcchhhhHHHHHHHHHhhcCC
Q 012442 426 ILI-YEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM 463 (463)
Q Consensus 426 ~~~-~~~~~~~ll~~~~~~g~~a~~~~~~~~~~~~~~~~ 463 (463)
.| +..+|..|++.|++.|++ +.+.+++++|+++++
T Consensus 524 -~p~~~~~y~~L~~~y~~~G~~--~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 524 -GPEKLNNYVVLLNLYNSSGRQ--AEAAKVVETLKRKGL 559 (697)
T ss_pred -CCCCCcchHHHHHHHHhCCCH--HHHHHHHHHHHHcCC
Confidence 45 467999999999999999 888888888887764
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-54 Score=440.41 Aligned_cols=365 Identities=13% Similarity=0.166 Sum_probs=207.2
Q ss_pred hHHHHHhhCCCCCCHHHHHHHHHhc--cCCchHHHHHHHHhcC-CCC-------------------------------CC
Q 012442 67 DIESALACTGIIPTPDLVHEVLQLS--YDSPSSAVDFFRWAGR-GQR-------------------------------LS 112 (463)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~~~~~~~-~~~-------------------------------~~ 112 (463)
.+...|...|..|+..++..++..+ .+..+.|.+++..+.+ +.. +|
T Consensus 72 ~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d 151 (857)
T PLN03077 72 KLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERD 151 (857)
T ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCC
Confidence 4555666666666666666555532 2334444444444333 333 45
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012442 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191 (463)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 191 (463)
..+||.+|.+|++.|++++|+++|++|...|. ||..||++++.+|++.++++.+.+++..|.+.|+.||..+||+||.+
T Consensus 152 ~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~ 231 (857)
T PLN03077 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231 (857)
T ss_pred eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHH
Confidence 55555555555555555555555555555443 45555555555555555555555555555555555555555555555
Q ss_pred HHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHH
Q 012442 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271 (463)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~ 271 (463)
|++. |+++.|.++|++|.. +|..+||++|.+|++.|++++|.++|++|.+. |+.| |..+|+.++.+|++.|+.+
T Consensus 232 y~k~-g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~P-d~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 232 YVKC-GDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMREL-SVDP-DLMTITSVISACELLGDER 305 (857)
T ss_pred HhcC-CCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCC-ChhHHHHHHHHHHhcCChH
Confidence 5555 555555555555543 45555666666666666666666666665553 5555 4555666666666666666
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351 (463)
Q Consensus 272 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 351 (463)
.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++| . .||..+||++|.+|++.|++++|.++|++|
T Consensus 306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-E----TKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC-C----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 66666666655555566666666666666666666666666553 2 345555666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHH
Q 012442 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV 431 (463)
Q Consensus 352 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 431 (463)
.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|++|+.+|++.|++++|.++|++|.+ +|..
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~v 456 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVI 456 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCee
Confidence 655666666666666666666666666666666666666666666666666666666666666666665543 3445
Q ss_pred HHHHHHHHHHHhcch
Q 012442 432 TMHKLKKAFYNESRS 446 (463)
Q Consensus 432 ~~~~ll~~~~~~g~~ 446 (463)
+|+.+|.+|++.|+.
T Consensus 457 s~~~mi~~~~~~g~~ 471 (857)
T PLN03077 457 SWTSIIAGLRLNNRC 471 (857)
T ss_pred eHHHHHHHHHHCCCH
Confidence 566666666666655
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.9e-54 Score=437.51 Aligned_cols=375 Identities=17% Similarity=0.211 Sum_probs=260.6
Q ss_pred hHHHHHhhCCCCCCHHHHHHHHH--hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 012442 67 DIESALACTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV 144 (463)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 144 (463)
+++..+.+.|+.|+..+++.++. ...|+.+.|.++|+.|. .+|..+||.+|.+|++.|++++|+++|++|.+.|+
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP---RRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 34444444455555555555555 33567777777777664 46777788888888888888888888888877775
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHH
Q 012442 145 -LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223 (463)
Q Consensus 145 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 223 (463)
||..+|+.++.+|.+.|+.+.|.+++..|.+.|+.||..+||+|+.+|++. |++++|.++|++|.. ||..+|+++
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~-g~~~~A~~vf~~m~~---~d~~s~n~l 360 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL-GSWGEAEKVFSRMET---KDAVSWTAM 360 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc-CCHHHHHHHHhhCCC---CCeeeHHHH
Confidence 677788888888888888888888888888888888888888888888888 888888888887764 677788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 012442 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303 (463)
Q Consensus 224 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 303 (463)
+.+|++.|++++|.++|++|.+. |+.| |..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++.|
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~-g~~P-d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQD-NVSP-DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-CCCC-CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 88888888888888888888774 7777 667888888888888888888888888888888888888888888888888
Q ss_pred CHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHH-------------------
Q 012442 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA------------------- 364 (463)
Q Consensus 304 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------------- 364 (463)
++++|.++|++| . .+|..+|+++|.+|++.|+.++|.++|++|.+ +++||..||+
T Consensus 439 ~~~~A~~vf~~m-~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 439 CIDKALEVFHNI-P----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred CHHHHHHHHHhC-C----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 888888888874 2 35667777777777777777777777777764 3556555444
Q ss_pred ----------------------------------------------HHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhH
Q 012442 365 ----------------------------------------------TAITMLLDADEPEIAIEIWNYILENGILPLEASA 398 (463)
Q Consensus 365 ----------------------------------------------~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 398 (463)
++|.+|++.|+.++|.++|++|.+.|+.||..+|
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 4444445555555555555555555555555555
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH-HCCCccCHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Q 012442 399 NELLVGLRNLGRLSDVRRFAEEML-NRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRC 458 (463)
Q Consensus 399 ~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~g~~a~~~~~~~~~~~ 458 (463)
+.++.+|.+.|++++|.++|++|. +.|+.|+..+|++++.+|++.|+. +.+.+++++|
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~--~eA~~~~~~m 651 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL--TEAYNFINKM 651 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH--HHHHHHHHHC
Confidence 555555555555555555555555 345555555555555555555555 4444444444
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=5.8e-24 Score=221.82 Aligned_cols=353 Identities=14% Similarity=0.083 Sum_probs=237.1
Q ss_pred cCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 012442 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171 (463)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (463)
.|+.++|..+|+.+....+.+...+..++..+.+.|++++|..+++.+....+.+..+|..+..++.+.|++++|...|+
T Consensus 546 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 625 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625 (899)
T ss_pred cCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555555555444444555555566666666666666666666555555555566666666666666666666666
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 012442 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251 (463)
Q Consensus 172 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 251 (463)
++.+.. +.+...+..+...+... |++++|..+|+++.+..+.+..++..++..+...|++++|.++++.+.+. .|
T Consensus 626 ~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~ 700 (899)
T TIGR02917 626 KLLALQ-PDSALALLLLADAYAVM-KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ---HP 700 (899)
T ss_pred HHHHhC-CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---Cc
Confidence 665443 33445555555666665 66666666666665544555666666666666666666666666666553 34
Q ss_pred chHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 012442 252 EHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331 (463)
Q Consensus 252 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 331 (463)
.+...+..+...+...|++++|.+.|+++...+ |+..++..+..++.+.|++++|.+.++.+... .+.+...+..+
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~l 776 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTAL 776 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 455566666666777777777777777766654 44455666677777777777777777775443 23456677777
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCH
Q 012442 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411 (463)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 411 (463)
...|...|++++|.++|+++.+.. +.+..++..+...+...|+ .+|..+++++.+.. +-+...+..+...+...|++
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 777778888888888888887765 6677777888888888888 77888888877643 23455677788888999999
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcchhhhHHHHHHHHHh
Q 012442 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCK 459 (463)
Q Consensus 412 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~a~~~~~~~~~~~~ 459 (463)
++|.++++++.+.+.. +..++..+..++.+.|+. +.+.+++++|.
T Consensus 854 ~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~ 898 (899)
T TIGR02917 854 DRALPLLRKAVNIAPE-AAAIRYHLALALLATGRK--AEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCH--HHHHHHHHHHh
Confidence 9999999999987753 888999999999999999 66666666654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=5.1e-23 Score=214.74 Aligned_cols=350 Identities=13% Similarity=0.113 Sum_probs=174.3
Q ss_pred CCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012442 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172 (463)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 172 (463)
|+++.|.+.|+.+....+.+..++..+...+.+.|+.++|..+|+++...++.+...+..++..+.+.|++++|.++++.
T Consensus 513 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444444444443333334444444444444444444444444444444443444444444444444444444444444
Q ss_pred HHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc
Q 012442 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252 (463)
Q Consensus 173 m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 252 (463)
+.+.. +.+...|..+...+... |++++|...|+.+.+..+.+...+..+..++.+.|++++|..+|+++.+. .|+
T Consensus 593 ~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~ 667 (899)
T TIGR02917 593 AADAA-PDSPEAWLMLGRAQLAA-GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL---KPD 667 (899)
T ss_pred HHHcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC
Confidence 44322 33344444455555544 55555555555544433334444445555555555555555555554332 344
Q ss_pred hHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 012442 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332 (463)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 332 (463)
+..++..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|...|+.+... .|+..++..+.
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~ 743 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLH 743 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHH
Confidence 44455555555555555555555555554443 234444555555555555555555555553331 23334444555
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHH
Q 012442 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412 (463)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 412 (463)
..+.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|.+.|+++.+.. +.+...++.+...+...|+ .
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-H
Confidence 55555555556655555555543 4455555555566666666666666666665543 2344555555566666666 5
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch--hhhHHHHHH
Q 012442 413 DVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLE 455 (463)
Q Consensus 413 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--a~~~~~~~~ 455 (463)
+|+.+++++.+.. +-+..++..+...+.+.|+. |.+.+++++
T Consensus 821 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 821 RALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666555432 12334455555556666666 444444333
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=7.7e-23 Score=191.96 Aligned_cols=302 Identities=13% Similarity=0.065 Sum_probs=170.2
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHHccCCc
Q 012442 122 VLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD---VVAVNSLLSAICRQENQ 198 (463)
Q Consensus 122 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~ 198 (463)
.+...|++++|+..|.++.+.++.+..++..+...+.+.|++++|..+++.+...+..++ ...+..+...|.+. |+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~-g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA-GL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC-CC
Confidence 344555666666666666655555555566666666666666666666666554321111 13445555556655 66
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch---HhhHHHHHHHHHccCCHHHHHH
Q 012442 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH---VLAYETFLITLIRGKQVDEALK 275 (463)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~~li~~~~~~~~~~~a~~ 275 (463)
+++|..+|+++.+..+.+..+++.++..+.+.|++++|.+.++.+.+. +..+.. ...+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666666665544445556666666666666666666666666543 211111 1133445555666666666666
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 012442 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355 (463)
Q Consensus 276 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 355 (463)
.|+++.+.. +.+...+..+...+.+.|++++|.++++++.... ......+++.++.+|.+.|++++|...++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQD-PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 666665543 2234455556666666666666666666643321 1111344556666666666666666666666654
Q ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCccCHH
Q 012442 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN---LGRLSDVRRFAEEMLNRRILIYEV 431 (463)
Q Consensus 356 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 431 (463)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.++++.|++.
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 344445566666666666666666666666653 4566666666655443 346666666666666665555544
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.2e-22 Score=190.73 Aligned_cols=329 Identities=12% Similarity=0.129 Sum_probs=271.4
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHhccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-
Q 012442 68 IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS- 146 (463)
Q Consensus 68 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~- 146 (463)
.+...++.........+..+.....++++.|+..|+.+.+..+.+..++..+...+.+.|++++|..+++.+......+
T Consensus 24 ~~~~~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 103 (389)
T PRK11788 24 ARQDQQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR 103 (389)
T ss_pred hhhhhhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH
Confidence 4444555566667777777776778999999999999988777788899999999999999999999999988765322
Q ss_pred ---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCC-----HH
Q 012442 147 ---LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD-----GD 218 (463)
Q Consensus 147 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~ 218 (463)
...+..+...|.+.|++++|+++|+++.+.. +.+..+++.++..+.+. |++++|.+.++.+.+..+.+ ..
T Consensus 104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~ 181 (389)
T PRK11788 104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGGDSLRVEIAH 181 (389)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 3568889999999999999999999998753 46778899999999999 99999999999987732222 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012442 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298 (463)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 298 (463)
.+..+...+.+.|++++|.+.|+++.+. .|++...+..+...+.+.|++++|.++|+++.+.+......++..+..+
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 258 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAA---DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC 258 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhH---CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH
Confidence 4567888889999999999999999764 5666778889999999999999999999999876522224678889999
Q ss_pred HHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhC---CCC
Q 012442 299 LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD---ADE 375 (463)
Q Consensus 299 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~ 375 (463)
|.+.|++++|...++.+... .|+...+..+...+.+.|++++|..+++++.+. .|+..++..++..+.. .|+
T Consensus 259 ~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~ 333 (389)
T PRK11788 259 YQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGR 333 (389)
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCcc
Confidence 99999999999999996543 466667788999999999999999999999886 6888899988887764 568
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHH
Q 012442 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412 (463)
Q Consensus 376 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 412 (463)
.+++..+++++.+.++.|++. ..|.++|...
T Consensus 334 ~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~~ 364 (389)
T PRK11788 334 AKESLLLLRDLVGEQLKRKPR------YRCRNCGFTA 364 (389)
T ss_pred chhHHHHHHHHHHHHHhCCCC------EECCCCCCCC
Confidence 999999999999988888776 2355566443
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.6e-18 Score=170.86 Aligned_cols=324 Identities=10% Similarity=0.039 Sum_probs=207.8
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...|+++.|+.+++......+.+...+..++......|++++|...|+.+.+..+.+...+..+...+.+.|++++|.+.
T Consensus 53 ~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred HhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 34677777777777666655666666666666666777777777777777777666666777777777777777777777
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 012442 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249 (463)
Q Consensus 170 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 249 (463)
++++.+.. +.+...+..+...+... |++++|...++.+....+.+...+..+. .+...|++++|...++.+.+. .-
T Consensus 133 l~~Al~l~-P~~~~a~~~la~~l~~~-g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~-~~ 208 (656)
T PRK15174 133 AEQAWLAF-SGNSQIFALHLRTLVLM-DKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPF-FA 208 (656)
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHC-CChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhc-CC
Confidence 77776542 33455566666666666 7777777777766553333444443332 366677777777777776553 11
Q ss_pred CCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHHHhcCCCCCH
Q 012442 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH----AVQLWDIMMVFHGAFPDS 325 (463)
Q Consensus 250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~ 325 (463)
+++...+..+...+...|++++|+..|++..+.+ +.+...+..+...+...|++++ |...|+.+.... +.+.
T Consensus 209 -~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~ 284 (656)
T PRK15174 209 -LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SDNV 284 (656)
T ss_pred -CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CCCH
Confidence 1123334445566677777777777777776654 3345566667777777777764 677777654422 2245
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHH
Q 012442 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA-SANELLVG 404 (463)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~ 404 (463)
..+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...++++.+. .|+.. .+..+..+
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~a 361 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 566677777777777777777777777654 445556666677777777777777777777664 23332 23334456
Q ss_pred HHcCCCHHHHHHHHHHHHHC
Q 012442 405 LRNLGRLSDVRRFAEEMLNR 424 (463)
Q Consensus 405 ~~~~g~~~~a~~~~~~m~~~ 424 (463)
+...|+.++|...|++..+.
T Consensus 362 l~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 67777777777777776654
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.8e-18 Score=170.42 Aligned_cols=331 Identities=10% Similarity=0.025 Sum_probs=271.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 012442 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 194 (463)
-...++..+.+.|++++|+.+++......+.+...+..++.++...|++++|.+.|+++.+.. +.+...+..+...+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 345567788899999999999999999988788888888899999999999999999999864 4456677778888888
Q ss_pred cCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHH
Q 012442 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274 (463)
Q Consensus 195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~ 274 (463)
. |++++|...+++.....+.+...+..+...+...|++++|...++.+... .|++...+..+ ..+...|++++|.
T Consensus 123 ~-g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~---~P~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 123 S-KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE---VPPRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred c-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CCCCHHHHHHH-HHHHHcCCHHHHH
Confidence 8 99999999999998866778889999999999999999999999988664 45455455444 3478899999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhH----HHHHHHH
Q 012442 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE----VEKFFHE 350 (463)
Q Consensus 275 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~ 350 (463)
..++.+.+....++...+..+..++.+.|++++|...++.+.... +.+...+..+...+...|++++ |...|++
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999998877533445556666788999999999999999965432 3456778889999999999986 8999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCH
Q 012442 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430 (463)
Q Consensus 351 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 430 (463)
..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...++++...+ |+.
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~ 351 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVT 351 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccc
Confidence 99875 6678899999999999999999999999999854 2345677778889999999999999999998764 444
Q ss_pred HH-HHHHHHHHHHhcch--hhhHHHHHHHH
Q 012442 431 VT-MHKLKKAFYNESRS--MRDIFDSLERR 457 (463)
Q Consensus 431 ~~-~~~ll~~~~~~g~~--a~~~~~~~~~~ 457 (463)
.. +..+..++...|+. |.+.+++.++.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33 33456678889988 66666655543
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=7e-18 Score=166.77 Aligned_cols=358 Identities=12% Similarity=0.062 Sum_probs=276.4
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...++++.|+..|+.+.. ..|+...|..+..+|.+.|++++|++.++...+.++.+..+|..+..+|...|++++|+..
T Consensus 138 ~~~~~~~~Ai~~y~~al~-~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 138 YRNKDFNKAIKLYSKAIE-CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred HHcCCHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 346999999999998775 4567889999999999999999999999999998888889999999999999999999876
Q ss_pred HHHHHhCCC----------------------------CcC-HHHHHH---H---------------------------HH
Q 012442 170 FDVMSMHGV----------------------------EQD-VVAVNS---L---------------------------LS 190 (463)
Q Consensus 170 ~~~m~~~g~----------------------------~~~-~~~~~~---l---------------------------l~ 190 (463)
|......+- .|. ...+.. . +.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 654432110 000 000000 0 00
Q ss_pred HH-----HccCCcHHHHHHHHHHhhc-C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHH
Q 012442 191 AI-----CRQENQTSRALEFLNRVKK-I--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262 (463)
Q Consensus 191 ~~-----~~~~~~~~~a~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~ 262 (463)
.. .+..+++++|.+.|+.... + .+.+...|+.+...+...|++++|+..|++..+. .|.+...|..+..
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l---~P~~~~~~~~la~ 373 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL---DPRVTQSYIKRAS 373 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHH
Confidence 00 0111578889999998775 2 2345677888899999999999999999999764 7767778999999
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHh
Q 012442 263 TLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVH 342 (463)
Q Consensus 263 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 342 (463)
.+...|++++|...|++..+.. +.+..+|..+...+...|++++|...|++.+... +.+...+..+...+.+.|+++
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIA 450 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999998874 4457889999999999999999999999965532 235667778888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChh------hHHHHHHHHHcCCCHHHHHH
Q 012442 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA------SANELLVGLRNLGRLSDVRR 416 (463)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~li~~~~~~g~~~~a~~ 416 (463)
+|...|++.++.. +.+...+..+...+...|++++|.+.|++..+.....+.. .++.....+...|++++|.+
T Consensus 451 eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~ 529 (615)
T TIGR00990 451 SSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAEN 529 (615)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999998864 5678889999999999999999999999998753221111 11222233445799999999
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHHhcch--hhhHHHHHHH
Q 012442 417 FAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLER 456 (463)
Q Consensus 417 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--a~~~~~~~~~ 456 (463)
++++....+. -+...+..+...+.+.|+. |+..+++.++
T Consensus 530 ~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 530 LCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999887652 3445788899999999998 6666666544
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=2.7e-17 Score=173.18 Aligned_cols=352 Identities=10% Similarity=0.020 Sum_probs=241.1
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH--HHH------------HHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL--PTF------------ASIFD 155 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~------------~~li~ 155 (463)
...|++++|+..|+.+.+..+.+...+..+..++.+.|++++|+..|++..+..+.+. ..| .....
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 4467777788877777766666777777777777778888888887777776554221 111 12245
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHH-------------
Q 012442 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI------------- 222 (463)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------- 222 (463)
.+.+.|++++|++.|+++.+.. +.+...+..+...+... |++++|++.|+++.+..+.+...+..
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~-g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMAR-KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence 5667777777777777777653 33455566666677766 77777777777766533333333322
Q ss_pred -----------------------------HHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHH
Q 012442 223 -----------------------------LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273 (463)
Q Consensus 223 -----------------------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a 273 (463)
+...+...|++++|.+.|++..+. .|++...+..+...|.+.|++++|
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL---DPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 233455678888888888888765 777777788888888888888888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHH--------------------------------------------HHHHcCCHhHHH
Q 012442 274 LKFLRVMKGENCFPTLKFFSNALD--------------------------------------------ILVKLNDSTHAV 309 (463)
Q Consensus 274 ~~~~~~m~~~~~~~~~~~~~~ll~--------------------------------------------~~~~~g~~~~a~ 309 (463)
...++++.+.. +.+...+..+.. .+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 88888887643 223333322222 334445555555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 012442 310 QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389 (463)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 389 (463)
.+++. .+.+...+..+...+.+.|++++|.+.|++..+.. +.+...+..++..|...|+.++|.+.++.+.+.
T Consensus 594 ~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 594 ALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 44442 23455566778888899999999999999999875 667888899999999999999999999988764
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCc--c---CHHHHHHHHHHHHHhcch--hhhHHHHHH
Q 012442 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL--I---YEVTMHKLKKAFYNESRS--MRDIFDSLE 455 (463)
Q Consensus 390 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~---~~~~~~~ll~~~~~~g~~--a~~~~~~~~ 455 (463)
. +.+...+..+..++...|++++|.++++++....-. | +...+..+...+...|+. |.+.+++.+
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 224456667778888999999999999998765321 2 224566667778888888 555555443
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=9.8e-17 Score=161.60 Aligned_cols=358 Identities=10% Similarity=0.033 Sum_probs=250.1
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...+++++|..+|+.+....+.+...+..++..+...|++++|+..+++..+..+.+.. +..+...+...|+.++|+..
T Consensus 60 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~ 138 (765)
T PRK10049 60 RNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRA 138 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHH
Confidence 55688888888888777666777777778888888888888888888888877776766 77888888888888888888
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCH------HHHHHHHHHHH-----hcCCH---HH
Q 012442 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG------DSFAILLEGWE-----KEGNV---EE 235 (463)
Q Consensus 170 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~ 235 (463)
++++.+.. +.+...+..+...+... +..+.|+..++.... .|+. .....++.... ..+++ ++
T Consensus 139 l~~al~~~-P~~~~~~~~la~~l~~~-~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~ 214 (765)
T PRK10049 139 MTQALPRA-PQTQQYPTEYVQALRNN-RLSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADR 214 (765)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHC-CChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHH
Confidence 88887753 33444555566666666 888888887776554 2221 11122222222 22234 67
Q ss_pred HHHHHHHHHHhcCCCCchHhhHH----HHHHHHHccCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHhHHHH
Q 012442 236 ANKTFGEMVERFEWNPEHVLAYE----TFLITLIRGKQVDEALKFLRVMKGENCF-PTLKFFSNALDILVKLNDSTHAVQ 310 (463)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~ 310 (463)
|++.++.+.+.....|++...+. ..+..+...|++++|+..|+++.+.+.+ |+. .-..+..+|...|++++|..
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence 78888888754333443221111 1133456779999999999999887632 332 22235778999999999999
Q ss_pred HHHHHHHhcCCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHhCCC
Q 012442 311 LWDIMMVFHGAFP--DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE-----------WQPT---PLNCATAITMLLDAD 374 (463)
Q Consensus 311 ~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~---~~~~~~li~~~~~~g 374 (463)
.|+.+.......+ .......+..++.+.|++++|.++++++.+.. -.|+ ...+..+...+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 9999654332221 13456667778899999999999999998753 0123 234566778889999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccC-HHHHHHHHHHHHHhcchhhhHHHH
Q 012442 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY-EVTMHKLKKAFYNESRSMRDIFDS 453 (463)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~a~~~~~~ 453 (463)
+.++|+++++++.... +-+...+..+...+...|++++|++.+++..... |+ ...+......+.+.|++ +.++.
T Consensus 374 ~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~--~~A~~ 448 (765)
T PRK10049 374 DLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEW--RQMDV 448 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCH--HHHHH
Confidence 9999999999998763 4467788889999999999999999999998764 54 45666666788888888 44444
Q ss_pred HHHHH
Q 012442 454 LERRC 458 (463)
Q Consensus 454 ~~~~~ 458 (463)
+++++
T Consensus 449 ~~~~l 453 (765)
T PRK10049 449 LTDDV 453 (765)
T ss_pred HHHHH
Confidence 44443
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=6.5e-17 Score=170.27 Aligned_cols=353 Identities=10% Similarity=-0.004 Sum_probs=258.7
Q ss_pred chHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 012442 95 PSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173 (463)
Q Consensus 95 ~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 173 (463)
...|...+..... ...|+. ........+...|++++|+..|++..+..+.+..++..+...+.+.|++++|+..|++.
T Consensus 251 ~~~A~~~L~~~~~~~~dp~~-~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~A 329 (1157)
T PRK11447 251 VAAARSQLAEQQKQLADPAF-RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKA 329 (1157)
T ss_pred HHHHHHHHHHHHHhccCcch-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456666665443 222322 22345677888999999999999999998888999999999999999999999999999
Q ss_pred HhCCCCc-CHH---------HH---HHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012442 174 SMHGVEQ-DVV---------AV---NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTF 240 (463)
Q Consensus 174 ~~~g~~~-~~~---------~~---~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 240 (463)
.+..-.. ... .| ......+.+. |++++|+..|+++.+..+.+...+..+...+...|++++|++.|
T Consensus 330 l~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~-g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y 408 (1157)
T PRK11447 330 LALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA-NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYY 408 (1157)
T ss_pred HHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8753211 111 11 1234567778 99999999999998877778888999999999999999999999
Q ss_pred HHHHHhcCCCCchHhhHHHH------------------------------------------HHHHHccCCHHHHHHHHH
Q 012442 241 GEMVERFEWNPEHVLAYETF------------------------------------------LITLIRGKQVDEALKFLR 278 (463)
Q Consensus 241 ~~~~~~~~~~p~~~~~~~~l------------------------------------------i~~~~~~~~~~~a~~~~~ 278 (463)
++..+. .|++..++..+ ...+...|++++|++.|+
T Consensus 409 ~~aL~~---~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~ 485 (1157)
T PRK11447 409 QQALRM---DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR 485 (1157)
T ss_pred HHHHHh---CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999765 56554444333 233456799999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC----
Q 012442 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN---- 354 (463)
Q Consensus 279 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---- 354 (463)
+..+.. +-+...+..+...|.+.|++++|...+++++....- +...+..+...+...++.++|...++.+...
T Consensus 486 ~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~--~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~ 562 (1157)
T PRK11447 486 QRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN--DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNS 562 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcCh
Confidence 999875 335677888999999999999999999996553322 2332322222333344444444443332110
Q ss_pred -----------------------------------CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 012442 355 -----------------------------------EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399 (463)
Q Consensus 355 -----------------------------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 399 (463)
..+.+...+..+...+.+.|++++|.+.|+++.+.. +.+...+.
T Consensus 563 ~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~ 641 (1157)
T PRK11447 563 NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARL 641 (1157)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 124566677788889999999999999999999864 33677888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch--hhhHHHHHHHH
Q 012442 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERR 457 (463)
Q Consensus 400 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~ 457 (463)
.+...|...|++++|.+.++...+.. +.+..++..+..++...|+. |.+.++.++..
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 99999999999999999999887643 13445566677888888988 66666666554
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=2.8e-18 Score=155.26 Aligned_cols=323 Identities=13% Similarity=0.071 Sum_probs=180.3
Q ss_pred ccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 012442 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170 (463)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (463)
..|+...|+.+++.+.+.-+.....|..+..++...|+.+.|.+.|.+..+.++......+.+.......|++++|...|
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 35666777777776666555666677777777777777777777666666555432222222333333334444444444
Q ss_pred HHHHhCC--------------------------------CCcC-HHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCH
Q 012442 171 DVMSMHG--------------------------------VEQD-VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG 217 (463)
Q Consensus 171 ~~m~~~g--------------------------------~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 217 (463)
.+..+.. +.|+ ...|-.|-..|... +.+++|...|.+....-+...
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~-~~~d~Avs~Y~rAl~lrpn~A 286 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEA-RIFDRAVSCYLRALNLRPNHA 286 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHH-hcchHHHHHHHHHHhcCCcch
Confidence 4333321 1121 22333444444444 444444444444433333334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012442 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297 (463)
Q Consensus 218 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 297 (463)
.++..+...|...|++|.|+..|++..+. .|.-..+|+.|..++-..|++.+|.+.|.+.+... +.-....+.|..
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~---~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgn 362 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALEL---QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGN 362 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhc---CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 44444444455555566666666555433 55445566666666666666666666666665543 223445666666
Q ss_pred HHHHcCCHhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCH
Q 012442 298 ILVKLNDSTHAVQLWDIMMVFHGAFPD-SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376 (463)
Q Consensus 298 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 376 (463)
.|...|.++.|..+|...+. +.|. ...++.|...|-+.|++++|...|++.++.. +.-...|+.+...|-..|+.
T Consensus 363 i~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHhhhH
Confidence 66666666666666665433 2333 3456666666666677777777776666542 22345666666666667777
Q ss_pred HHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 012442 377 EIAIEIWNYILENGILPL-EASANELLVGLRNLGRLSDVRRFAEEMLNR 424 (463)
Q Consensus 377 ~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 424 (463)
..|...+.+.+.. .|. ...++-|...|-..|++.+|+.-|++..+.
T Consensus 439 ~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 439 SAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 7777776666653 332 335666667777777777777777776543
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=9.5e-17 Score=158.75 Aligned_cols=342 Identities=13% Similarity=0.034 Sum_probs=263.1
Q ss_pred CCCCCHHHHHHHHH--hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--------
Q 012442 76 GIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-------- 145 (463)
Q Consensus 76 ~~~~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------- 145 (463)
...|++..+..+-. ...|+++.|+..++.+.+..+.+...|..+..+|...|++++|+..|......+..
T Consensus 155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 45566665554433 44699999999999998877888899999999999999999998766544322111
Q ss_pred ----------------------CHHHHHHHHH------------------------------H------HHhcCChHHHH
Q 012442 146 ----------------------SLPTFASIFD------------------------------S------YCGAGKYDEAV 167 (463)
Q Consensus 146 ----------------------~~~~~~~li~------------------------------~------~~~~g~~~~A~ 167 (463)
+...+..+.. . ....+++++|.
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence 0000000000 0 01125788999
Q ss_pred HHHHHHHhCC-CCc-CHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012442 168 MSFDVMSMHG-VEQ-DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 168 ~~~~~m~~~g-~~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
+.|+...+.+ ..| +...|+.+...+... |++++|+..|++.....+.+...|..+...+...|++++|...|++..+
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~-g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLK-GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998764 233 445677777777788 9999999999998876666788999999999999999999999999976
Q ss_pred hcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCH
Q 012442 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325 (463)
Q Consensus 246 ~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 325 (463)
. .|++..+|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...|+..+... +.+.
T Consensus 394 ~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--P~~~ 467 (615)
T TIGR00990 394 L---NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--PEAP 467 (615)
T ss_pred h---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCh
Confidence 4 78788899999999999999999999999998875 3456778888999999999999999999965532 3456
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 012442 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL------NCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399 (463)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 399 (463)
..|+.+...+...|++++|.+.|++..+..-..+.. .++..+..+...|++++|.+++++..+... .+...+.
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~ 546 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVA 546 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHH
Confidence 788889999999999999999999998764111111 122222334457999999999999988542 3445788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCC
Q 012442 400 ELLVGLRNLGRLSDVRRFAEEMLNRR 425 (463)
Q Consensus 400 ~li~~~~~~g~~~~a~~~~~~m~~~~ 425 (463)
.+...+.+.|++++|.++|++..+..
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 89999999999999999999987653
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=2.9e-18 Score=155.10 Aligned_cols=338 Identities=12% Similarity=0.119 Sum_probs=215.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 012442 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187 (463)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 187 (463)
..+--..+|..+...+-..|++++|+.+++.+.+..+...+.|..+..++...|+.+.|.+.|.+.++. .|+.....+
T Consensus 111 ~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s 188 (966)
T KOG4626|consen 111 KNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARS 188 (966)
T ss_pred ccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhc
Confidence 445556789999999999999999999999999999888999999999999999999999999998875 677666555
Q ss_pred HHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------------------
Q 012442 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER--------------------- 246 (463)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------------- 246 (463)
-+..+.+..|+.++|...|.+.....+--...|+.|...+-..|+...|++.|++..+-
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 44444444355555555554444322333344444444444444444444444444321
Q ss_pred ----------cCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 247 ----------FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHAVQLWDIM 315 (463)
Q Consensus 247 ----------~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 315 (463)
....|....++..+...|...|..+.|+..|++..+. .|+ ...|+.|..++-..|++.+|++.|...
T Consensus 269 d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 1224444445555555555556666666666655553 233 346666666666677777777777665
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCh
Q 012442 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395 (463)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 395 (463)
+.... .-....+.|...|...|.+++|..+|....+.. +--...++.|...|-++|++++|...+++.+. +.|+.
T Consensus 347 L~l~p--~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f 421 (966)
T KOG4626|consen 347 LRLCP--NHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF 421 (966)
T ss_pred HHhCC--ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH
Confidence 44321 123455666666677777777777777666542 33345566677777777777777777777665 45543
Q ss_pred -hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch--hhhHHHHHH
Q 012442 396 -ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLE 455 (463)
Q Consensus 396 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--a~~~~~~~~ 455 (463)
..|+-+...|-..|+.+.|.+.+.+.+..+. .-...++.|...+..+|+. |++-+++.+
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nP-t~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINP-TFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc-HHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 3666666677777777777777776665431 1234566666777777766 554444433
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=8.5e-15 Score=145.16 Aligned_cols=361 Identities=10% Similarity=0.027 Sum_probs=270.5
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...|+.++|+.+++.+....+........+...+...|++++|+++|+++.+..+.+...+..++..+...++.++|++.
T Consensus 79 ~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~ 158 (822)
T PRK14574 79 GWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQ 158 (822)
T ss_pred HHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 45699999999999887333344444444567888999999999999999999988888888889999999999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------
Q 012442 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG-------- 241 (463)
Q Consensus 170 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-------- 241 (463)
++++... .|+...+..++..+... ++..+|++.++++.+..+.+...+..++..+.+.|-...|.++..
T Consensus 159 l~~l~~~--dp~~~~~l~layL~~~~-~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~ 235 (822)
T PRK14574 159 ATELAER--DPTVQNYMTLSYLNRAT-DRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSA 235 (822)
T ss_pred HHHhccc--CcchHHHHHHHHHHHhc-chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH
Confidence 9999875 56666665554444445 666669999999988777788888888777766655444443333
Q ss_pred ----------------------------------------HHHHhcCCCCchHhhH----HHHHHHHHccCCHHHHHHHH
Q 012442 242 ----------------------------------------EMVERFEWNPEHVLAY----ETFLITLIRGKQVDEALKFL 277 (463)
Q Consensus 242 ----------------------------------------~~~~~~~~~p~~~~~~----~~li~~~~~~~~~~~a~~~~ 277 (463)
.+....+-.|+....| .-.+-++...+++.++++.|
T Consensus 236 ~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y 315 (822)
T PRK14574 236 EHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEY 315 (822)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3332222334222122 23456777889999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 012442 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG----AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353 (463)
Q Consensus 278 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (463)
+.|...|.+....+-..+.++|...+++++|..++..+....+ ..++......|.-+|...+++++|..+++++.+
T Consensus 316 ~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 316 EAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 9999888665567888999999999999999999999655442 233444567889999999999999999999987
Q ss_pred CCC-----------CCC---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHH
Q 012442 354 NEW-----------QPT---PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419 (463)
Q Consensus 354 ~~~-----------~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 419 (463)
..- .|| ...+..++..+...|++.+|++.++++.... +-|......+.+.+...|...+|++.++
T Consensus 396 ~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 396 QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 410 111 1224456778889999999999999998754 4578899999999999999999999997
Q ss_pred HHHHCCCccCHHHHHHHHHHHHHhcchhhhHHHHHHHH
Q 012442 420 EMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 457 (463)
Q Consensus 420 ~m~~~~~~~~~~~~~~ll~~~~~~g~~a~~~~~~~~~~ 457 (463)
...... +-+..+......++...|++ +.++.++++
T Consensus 475 ~a~~l~-P~~~~~~~~~~~~al~l~e~--~~A~~~~~~ 509 (822)
T PRK14574 475 AVESLA-PRSLILERAQAETAMALQEW--HQMELLTDD 509 (822)
T ss_pred HHhhhC-CccHHHHHHHHHHHHhhhhH--HHHHHHHHH
Confidence 776552 33456677778888888998 444444433
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=3.2e-15 Score=150.72 Aligned_cols=337 Identities=10% Similarity=0.007 Sum_probs=253.7
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...++.++|+..++.+....+.+.. +..+..++...|+.++|+..++++.+..+.+...+..+...+...|..+.|++.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 5689999999999999887788888 999999999999999999999999999988888888899999999999999999
Q ss_pred HHHHHhCCCCcCH------HHHHHHHHHHHcc----CCcH---HHHHHHHHHhhcCC--CCCH-HHH----HHHHHHHHh
Q 012442 170 FDVMSMHGVEQDV------VAVNSLLSAICRQ----ENQT---SRALEFLNRVKKIV--DPDG-DSF----AILLEGWEK 229 (463)
Q Consensus 170 ~~~m~~~g~~~~~------~~~~~ll~~~~~~----~~~~---~~a~~~~~~~~~~~--~~~~-~~~----~~l~~~~~~ 229 (463)
++.... .|+. .....++...... .+++ ++|++.++.+.+.. .|+. ..+ ...+..+..
T Consensus 173 l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 173 IDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 987664 2331 1122223322211 0234 77888888877522 2221 111 111345567
Q ss_pred cCCHHHHHHHHHHHHHhcCC-CCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHHcCCH
Q 012442 230 EGNVEEANKTFGEMVERFEW-NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP---TLKFFSNALDILVKLNDS 305 (463)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~ 305 (463)
.|++++|++.|+.+.+. +- .|.+...+ +...|...|++++|+..|+++.+..... .......+..++...|++
T Consensus 250 ~g~~~eA~~~~~~ll~~-~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 250 RDRYKDVISEYQRLKAE-GQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred hhhHHHHHHHHHHhhcc-CCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 79999999999999875 32 35333333 5778999999999999999987654111 134566677788999999
Q ss_pred hHHHHHHHHHHHhcC----------CCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhC
Q 012442 306 THAVQLWDIMMVFHG----------AFPD---SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372 (463)
Q Consensus 306 ~~a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 372 (463)
++|.++++.+..... -.|+ ...+..+...+...|+.++|.++++++.... +.+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 999999999654321 1123 2345567778889999999999999998875 7788899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 012442 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437 (463)
Q Consensus 373 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 437 (463)
.|++++|++.+++..+.. +-+...+..+...+...|++++|..+++++.+. .|+......+=
T Consensus 406 ~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~ 467 (765)
T PRK10049 406 RGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLA 467 (765)
T ss_pred cCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 999999999999999853 223556667777899999999999999999875 35655444443
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.7e-13 Score=119.37 Aligned_cols=368 Identities=13% Similarity=0.172 Sum_probs=262.3
Q ss_pred hHHHHHhhCCCCCCHHHHHHHHH-hcc-CC---------------------------chHHHHHHHHhcCCCCCCHHHHH
Q 012442 67 DIESALACTGIIPTPDLVHEVLQ-LSY-DS---------------------------PSSAVDFFRWAGRGQRLSPYAWN 117 (463)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~~~~l~-~~~-~~---------------------------~~~a~~~~~~~~~~~~~~~~~~~ 117 (463)
-+...|+..|...++..--.+++ .++ ++ .+.|.-+|+ ..+.+..+|.
T Consensus 136 ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E----~~PKT~et~s 211 (625)
T KOG4422|consen 136 ILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFE----TLPKTDETVS 211 (625)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHh----hcCCCchhHH
Confidence 37888999999888888777777 332 11 122332333 3467778999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC
Q 012442 118 LMVDVLGKNGRFEQMWNAVRVMKEDG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196 (463)
Q Consensus 118 ~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 196 (463)
++|.++++-...+.|.+++++-.+.. .....+||.+|.+-.-..+ .+++.+|....+.||..|+|+++.+..+.
T Consensus 212 ~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akf- 286 (625)
T KOG4422|consen 212 IMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKF- 286 (625)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHh-
Confidence 99999999999999999998877654 4788899999876543332 78899999888999999999999999999
Q ss_pred CcHHHH----HHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHh------cCCCCchHhhHHHHHHHH
Q 012442 197 NQTSRA----LEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEE-ANKTFGEMVER------FEWNPEHVLAYETFLITL 264 (463)
Q Consensus 197 ~~~~~a----~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~------~~~~p~~~~~~~~li~~~ 264 (463)
|+++.| .+++.+|++ |+.|...+|..+|..+++.++..+ +..+..++... ..+.|+|...|..-+..|
T Consensus 287 g~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic 366 (625)
T KOG4422|consen 287 GKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSIC 366 (625)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHH
Confidence 877654 566777888 999999999999999998887644 44444444332 124566666778888888
Q ss_pred HccCCHHHHHHHHHHHhhCC----CCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 012442 265 IRGKQVDEALKFLRVMKGEN----CFPTL---KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337 (463)
Q Consensus 265 ~~~~~~~~a~~~~~~m~~~~----~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (463)
.+..+.+-|.++-.-+.... +.|+. ..|..+....|+....+.-...|+. +.-.-+-|+..+...++++..-
T Consensus 367 ~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~-lVP~~y~p~~~~m~~~lrA~~v 445 (625)
T KOG4422|consen 367 SSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED-LVPSAYFPHSQTMIHLLRALDV 445 (625)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccceecCCchhHHHHHHHHhh
Confidence 88889888888877664322 33432 4567788888899999999999998 4545567888888889998888
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCC-CH--------HH-----HHHHH-------HHHHHcCCCCChh
Q 012442 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD-EP--------EI-----AIEIW-------NYILENGILPLEA 396 (463)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~~-----a~~~~-------~~~~~~~~~p~~~ 396 (463)
.++++-.-+++..++..|..-+...-.-++..+++.. +. .. |..++ .++.+..+ ...
T Consensus 446 ~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t 523 (625)
T KOG4422|consen 446 ANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PAT 523 (625)
T ss_pred cCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--Chh
Confidence 9999999999999998885555555555555555544 11 00 11111 12333333 345
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CccCHHHHH---HHHHHHHHhcch
Q 012442 397 SANELLVGLRNLGRLSDVRRFAEEMLNRR-ILIYEVTMH---KLKKAFYNESRS 446 (463)
Q Consensus 397 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~---~ll~~~~~~g~~ 446 (463)
..+...-.+.+.|+.++|.+++..+.+.+ -.|-....+ -++.+..+++..
T Consensus 524 ~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sp 577 (625)
T KOG4422|consen 524 SLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSP 577 (625)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCH
Confidence 67777778899999999999999985543 233334444 445555555555
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=2.2e-12 Score=128.27 Aligned_cols=333 Identities=10% Similarity=0.024 Sum_probs=251.1
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...|+++.|+++|+.+.+..+.|...+..++..+...++.++|++.++.+....+.+ ..+..++..+...++..+|++.
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~-~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV-QNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch-HHHHHHHHHHHhcchHHHHHHH
Confidence 456999999999999999888888999999999999999999999999998876643 3345555555556777679999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHH------------------------------------------
Q 012442 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN------------------------------------------ 207 (463)
Q Consensus 170 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~------------------------------------------ 207 (463)
++++.+.. +-+...+..++.++.+. |-...|+++..
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~-~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRN-RIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHc-CCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 99999874 44566667777777666 54444433332
Q ss_pred ------Hhhc---CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCchHhhHHHHHHHHHccCCHHHH
Q 012442 208 ------RVKK---IVDPDGDSF----AILLEGWEKEGNVEEANKTFGEMVERFEW-NPEHVLAYETFLITLIRGKQVDEA 273 (463)
Q Consensus 208 ------~~~~---~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~~li~~~~~~~~~~~a 273 (463)
.+.. ..++....| .=.+-++...|++.++++.|+.+... +. .| ..+-..+..+|...+++++|
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-~~~~P--~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE-GYKMP--DYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-CCCCC--HHHHHHHHHHHHhcCCcHHH
Confidence 2222 112221222 12445667889999999999999985 54 35 23678889999999999999
Q ss_pred HHHHHHHhhCC-----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCC----------CC--CHH-HHHHHHHHH
Q 012442 274 LKFLRVMKGEN-----CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA----------FP--DSL-TYNMIFECL 335 (463)
Q Consensus 274 ~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------~~--~~~-~~~~li~~~ 335 (463)
+.+|+.+.... ..++......|.-+|...+++++|..+++.+...... .| |-. .+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 99999996643 1234444678999999999999999999996442220 12 222 344556778
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHH
Q 012442 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415 (463)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 415 (463)
...|+..+|.+.++++.... +-|......+.+.+...|.+.+|++.++...... +-+..+......++...|++++|.
T Consensus 427 ~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHH
Confidence 88999999999999998876 8899999999999999999999999997777642 334567777888899999999999
Q ss_pred HHHHHHHHCCCccCHHH
Q 012442 416 RFAEEMLNRRILIYEVT 432 (463)
Q Consensus 416 ~~~~~m~~~~~~~~~~~ 432 (463)
.+.+.+.+.. |+...
T Consensus 505 ~~~~~l~~~~--Pe~~~ 519 (822)
T PRK14574 505 LLTDDVISRS--PEDIP 519 (822)
T ss_pred HHHHHHHhhC--CCchh
Confidence 9998887653 44443
No 24
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=8.6e-13 Score=125.30 Aligned_cols=351 Identities=13% Similarity=0.093 Sum_probs=272.8
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...|+.++|.+++..+.+..+.+...|..|..+|-..|+.+++...+-..-..++.+...|..+.....+.|+++.|.-.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 34699999999999999889999999999999999999999999988887777778889999999999999999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012442 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD-----SFAILLEGWEKEGNVEEANKTFGEMV 244 (463)
Q Consensus 170 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (463)
|.+.++.. +++...+---...|-+. |+...|...|.++-+-.+|... .-..+++.+...++-+.|.+.++...
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~-G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKT-GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHh-ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999875 55555555667788888 9999999999999884444332 22335677888888899999999887
Q ss_pred HhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC---------------------------CHHHHHHHHH
Q 012442 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP---------------------------TLKFFSNALD 297 (463)
Q Consensus 245 ~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---------------------------~~~~~~~ll~ 297 (463)
.. +..-.+...++.++..+.+...++.+......+......+ +..+ ..++-
T Consensus 308 s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 308 SK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred hh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 74 3333355678999999999999999999988886622222 2222 12223
Q ss_pred HHHHcCCHhHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCC
Q 012442 298 ILVKLNDSTHAVQLWDIMMVFHG--AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375 (463)
Q Consensus 298 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 375 (463)
++.+....+...-+... ..... ..-+...|.-+..+|...|++.+|+.+|..+.....--+...|-.+..+|...|.
T Consensus 386 cL~~L~~~e~~e~ll~~-l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHF-LVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHH-HHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 34444444444444444 34444 3345678889999999999999999999999987656677899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH--------CCCccCHHHHHHHHHHHHHhcch
Q 012442 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN--------RRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 376 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
.++|.+.++..+... +-+...--+|...+.+.|+.++|.+.+..+.. .+..|+....-.....+.+.|+.
T Consensus 465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 999999999999843 22444556677789999999999999999642 23455666666666777777776
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=7.5e-13 Score=115.45 Aligned_cols=357 Identities=16% Similarity=0.158 Sum_probs=261.2
Q ss_pred CCCCHHHHHHHHH--hccCCchHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCHHHHHH
Q 012442 77 IIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGR-GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFAS 152 (463)
Q Consensus 77 ~~~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~ 152 (463)
.+-++.++..+++ +.+.+.+.|..+++.... ..+.+..+||.+|.+-.-... .+++.+|..... ||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 3457778888888 447888999999998776 778999999999987544433 778899988876 89999999
Q ss_pred HHHHHHhcCChHH----HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcH-HHHHHHHHHhhc---C------CCCCHH
Q 012442 153 IFDSYCGAGKYDE----AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT-SRALEFLNRVKK---I------VDPDGD 218 (463)
Q Consensus 153 li~~~~~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~-~~a~~~~~~~~~---~------~~~~~~ 218 (463)
++++..+.|+++. |.+++.+|++.|++|+..+|..+|..+++. ++. ..+..++..+.+ | .+.|..
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re-~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRE-SDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhccc-CCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 9999999998775 467888999999999999999999999998 555 446666666543 1 234566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CCCch---HhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 012442 219 SFAILLEGWEKEGNVEEANKTFGEMVERFE--WNPEH---VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293 (463)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 293 (463)
.|...+..|....+.+-|.++..-+....+ ..|++ ..-|..+....|+....+.....|+.|.-.-+-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 788899999999999999998877654211 12222 2346677788888899999999999998888889999999
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-CH-------------------hHH-HHHHHHHH
Q 012442 294 NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK-RV-------------------HEV-EKFFHEMI 352 (463)
Q Consensus 294 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~-------------------~~a-~~~~~~~~ 352 (463)
.++++..-.|.++-.-++|.. +...|...+...-.-++..+++.. +. .++ ...-.+|.
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D-~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKD-SKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHH-HHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999988 455554333333333333444333 11 111 11112233
Q ss_pred HCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CCCChhhHH---HHHHHHHcCCCHHHHHHHHHHHHHCCCcc
Q 012442 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-ILPLEASAN---ELLVGLRNLGRLSDVRRFAEEMLNRRILI 428 (463)
Q Consensus 353 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 428 (463)
+. .......+.+.-.+.+.|+.++|.+++..+.+.+ --|.....| -+++.-.+.++...|...++-|...+...
T Consensus 517 ~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 517 AQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred hc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 33 4455666777778899999999999999996543 334444556 45566677888999999999998777654
Q ss_pred CHHHHHHHHHHHH
Q 012442 429 YEVTMHKLKKAFY 441 (463)
Q Consensus 429 ~~~~~~~ll~~~~ 441 (463)
-.-.-+.++..|.
T Consensus 595 ~E~La~RI~e~f~ 607 (625)
T KOG4422|consen 595 CEGLAQRIMEDFA 607 (625)
T ss_pred hhHHHHHHHHhcC
Confidence 4445555555553
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=2.6e-13 Score=126.47 Aligned_cols=285 Identities=12% Similarity=0.085 Sum_probs=194.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH--HHHHHHHccCCcHHHHH
Q 012442 126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN--SLLSAICRQENQTSRAL 203 (463)
Q Consensus 126 ~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~~~~~~~a~ 203 (463)
.|+++.|.+.+....+........|........+.|+++.|.+.+.++.+. .|+...+. .....+... |+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~-g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLAR-NENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHC-CCHHHHH
Confidence 588888887777655443222333444455557888888888888888764 45544333 224456666 8888888
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch-H-----hhHHHHHHHHHccCCHHHHHHHH
Q 012442 204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH-V-----LAYETFLITLIRGKQVDEALKFL 277 (463)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-----~~~~~li~~~~~~~~~~~a~~~~ 277 (463)
..++.+.+..+.+......+...|.+.|++++|.+++..+.+. +..++. . .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~-~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKA-HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888887766777888888888888888888888888888875 333212 1 12333344444445556666666
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 012442 278 RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357 (463)
Q Consensus 278 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (463)
+.+.+. .+.+......+...+...|+.++|.+++++..+ ..++... .++.+....++.+++.+..+...+.. +
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 665443 244667777788888888888888888887544 2334421 12333445588888888888887764 5
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012442 358 PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 358 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
-|...+..+...|.+.|++++|.+.|+.+.+ ..|+...|..+...+.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5666777888888888888888888888887 457777777888888888888888888887543
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=1.7e-12 Score=131.60 Aligned_cols=186 Identities=9% Similarity=-0.036 Sum_probs=82.3
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 012442 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307 (463)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 307 (463)
...|++++|...|+++... .| +...+..+...+.+.|++++|...+++..+.+ +.+...+..+.....+.|++++
T Consensus 520 ~~~Gr~eeAi~~~rka~~~---~p-~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH---DM-SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc---CC-CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 3455555555555544321 22 12233344444444555555555555544432 1111222222222233355555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 012442 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387 (463)
Q Consensus 308 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 387 (463)
|...+++.+. ..|+...|..+...+.+.|++++|...|++..+.. +.+...+..+..++...|+.++|...+++..
T Consensus 595 Al~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 595 ALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555554332 22334444444445555555555555555555443 3344444444445555555555555555544
Q ss_pred HcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012442 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 388 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
+.. +-+...+..+..++...|++++|...+++..+
T Consensus 671 ~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 671 KGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 432 12333444444455555555555555555443
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=5.7e-13 Score=124.85 Aligned_cols=287 Identities=10% Similarity=0.046 Sum_probs=162.9
Q ss_pred hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHccCCcHHHH
Q 012442 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV--VAVNSLLSAICRQENQTSRA 202 (463)
Q Consensus 125 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~~a 202 (463)
..|+++.|.+.+....+..+.+...+-....+..+.|+.+.|.+.+.+..+. .|+. ...-.....+... |+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~-~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQ-NELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHC-CCHHHH
Confidence 4577777777776665554434444555566666777777777777776543 2333 2222335555566 777777
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHH----HHHHHHHccCCHHHHHHHHH
Q 012442 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE----TFLITLIRGKQVDEALKFLR 278 (463)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----~li~~~~~~~~~~~a~~~~~ 278 (463)
...++.+.+..|-+..++..+...+.+.|++++|.+.+..+.+. +..++. .+. ....+....+..+++.+.+.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~~~~--~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLFDDE--EFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCCCHH--HHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 77777776655666667777777777777777777777777664 332211 111 11111122222222333444
Q ss_pred HHhhCC---CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHHcCCHhHHHHHHHHHH
Q 012442 279 VMKGEN---CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT---YNMIFECLIKNKRVHEVEKFFHEMI 352 (463)
Q Consensus 279 ~m~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~ 352 (463)
.+.+.. .+.+...+..+...+...|+.+.|.+++++.++.. |+... ...........++.+.+.+.+++..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 443332 11255666666677777777777777777754422 22221 1111112223456666666666666
Q ss_pred HCCCCCCH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 012442 353 KNEWQPTP--LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421 (463)
Q Consensus 353 ~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 421 (463)
+.. +-|. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 327 k~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 327 KNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 552 3333 4455666777777777777777774333334566666667777777777777777777664
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=8.5e-13 Score=123.71 Aligned_cols=305 Identities=11% Similarity=-0.029 Sum_probs=222.2
Q ss_pred CHHHHHHHHHhccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Q 012442 80 TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYC 158 (463)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~li~~~~ 158 (463)
...+...++....|+++.|.+.+....+..+-....+-....++.+.|+++.|.+.+.+..+..+.+ ....-.....+.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 3456667777889999999999987765433344555566788889999999999999987665433 334555688889
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHH-HHHHHH---HhcCCHH
Q 012442 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA-ILLEGW---EKEGNVE 234 (463)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~g~~~ 234 (463)
..|+++.|.+.++.+.+.. +-+...+..+...+... |++++|.+.+..+.+....+...+. .-...+ ...+..+
T Consensus 165 ~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~-~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRS-GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999875 45667888899999999 9999999999999873233433332 111211 2233333
Q ss_pred HHHHHHHHHHHhcC-CCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHHcCCHhHHHH
Q 012442 235 EANKTFGEMVERFE-WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF---FSNALDILVKLNDSTHAVQ 310 (463)
Q Consensus 235 ~a~~~~~~~~~~~~-~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~g~~~~a~~ 310 (463)
++.+.+..+.+... -.+++...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHH
Confidence 33334444433200 022467789999999999999999999999999875 44332 1122222344578888999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
.++...+...-.|+.....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 321 ~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 321 LIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 998866654444433566788899999999999999999654444578999999999999999999999999998654
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=3e-12 Score=129.94 Aligned_cols=176 Identities=7% Similarity=-0.085 Sum_probs=92.9
Q ss_pred ccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHH--------HHhcCC
Q 012442 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS--------YCGAGK 162 (463)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~--------~~~~g~ 162 (463)
..|+.++|+..++.+.+..+.|...+..+... +++++|..+++++....+-+..++..+... |.+.+
T Consensus 90 ~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~e- 164 (987)
T PRK09782 90 HFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLP- 164 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHH-
Confidence 34555666666655555444444444443222 555566666666655555555555444444 44443
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHH-HHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Q 012442 163 YDEAVMSFDVMSMHGVEQDVVAVNSL-LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK-EGNVEEANKTF 240 (463)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~l-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~ 240 (463)
+|.+.++ .......|+..+.... ...|.+. |++++|+.++.++.+..+.+..-...|..+|.. .++ +.+..++
T Consensus 165 --qAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l-~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~ 239 (987)
T PRK09782 165 --VARAQLN-DATFAASPEGKTLRTDLLQRAIYL-KQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQ 239 (987)
T ss_pred --HHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHH-hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHh
Confidence 3333332 2222122233333333 5566666 666666666666666445555555556556665 244 5555554
Q ss_pred HHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 012442 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 241 ~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (463)
+...+ .+...+..+...|.+.|+.++|.++++++..
T Consensus 240 ~~~lk------~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 240 SQGIF------TDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred chhcc------cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 42111 2555667777777777777777777776643
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=1.4e-12 Score=121.59 Aligned_cols=294 Identities=14% Similarity=0.074 Sum_probs=226.9
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH-HHHHHHHHHHH
Q 012442 81 PDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYA-WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL-PTFASIFDSYC 158 (463)
Q Consensus 81 ~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~li~~~~ 158 (463)
..+...++....|+++.|.+.+....... .++.. |-.......+.|+++.|.+.|.++.+..+.+. .........+.
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 34555666677899999999888655432 22333 43334555899999999999999987655432 22224477889
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHH--------HHHHHHHHHHhc
Q 012442 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD--------SFAILLEGWEKE 230 (463)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~ 230 (463)
..|+++.|.+.++++.+.. +-+......+...|.+. |++++|.+++..+.+....+.. +|..++......
T Consensus 165 ~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~-gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRT-GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999875 55677888899999999 9999999999999883222322 333445545556
Q ss_pred CCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 012442 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310 (463)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 310 (463)
.+.+...++++.+.+. .|++......+...+...|+.++|.+++++..+. +++.... ++.+....++.+++.+
T Consensus 243 ~~~~~l~~~w~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 243 QGSEGLKRWWKNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred cCHHHHHHHHHhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence 6677788888888664 4557788999999999999999999999999884 4555322 3334445699999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
..+...+.. +-|...+.++...+.+.+++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++...
T Consensus 316 ~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 316 VLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999855433 346667888999999999999999999999986 69999999999999999999999999998764
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=5.3e-16 Score=138.15 Aligned_cols=261 Identities=14% Similarity=0.156 Sum_probs=86.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 118 LMVDVLGKNGRFEQMWNAVRVMKEDG--VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 118 ~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
.+...+.+.|++++|+++++...... +.+...|..+...+...++.+.|++.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44566666677777777774433222 3345555666666666677777777777776554 2244455555555 455
Q ss_pred CCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHH
Q 012442 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275 (463)
Q Consensus 196 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~ 275 (463)
+++++|.++++..-+. .++...+..++..+...++++++.++++.+... .-.+++...|..+...+.+.|+.++|++
T Consensus 91 -~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 -GDPEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred -cccccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6777777666554331 245555666666677777777777777776543 2223355666666777777777777777
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 012442 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355 (463)
Q Consensus 276 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 355 (463)
.+++..+.. +.|......++..+...|+.+++..+++...... +.|...+..+..+|...|+.++|+.+|++.....
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 777776654 2235566666667777777777666666643322 3344456667777777777777777777777654
Q ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 012442 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387 (463)
Q Consensus 356 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 387 (463)
+.|......+..++...|+.++|.++.+++.
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -TT-HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccccc
Confidence 5567777777777777777777777766654
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=8.5e-16 Score=136.83 Aligned_cols=261 Identities=15% Similarity=0.177 Sum_probs=91.4
Q ss_pred HHHHHHccCCcHHHHHHHHHHhhc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHH
Q 012442 188 LLSAICRQENQTSRALEFLNRVKK-I-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265 (463)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~ 265 (463)
+...+.+. |++++|+++++.... . .+.|...|..+...+...++++.|.+.++++... .+.+...+..++.. .
T Consensus 14 ~A~~~~~~-~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~---~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 14 LARLLYQR-GDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS---DKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccc-c
Confidence 34555556 777777777744333 2 2344455555566666677777777777777553 23234455555555 5
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 012442 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345 (463)
Q Consensus 266 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 345 (463)
..+++++|.++++...+.. ++...+..++..+.+.++++++..+++.+......+.+...|..+...+.+.|+.++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6777777777776655443 44555666677777777777777777775444444556666777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 012442 346 KFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425 (463)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 425 (463)
+.+++.++.. +.|......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.+|++.....
T Consensus 167 ~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 167 RDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 7777777764 4456667777777777777777777777666543 4455566777777777777777777777766543
Q ss_pred CccCHHHHHHHHHHHHHhcch--hhhHHHHHHHHH
Q 012442 426 ILIYEVTMHKLKKAFYNESRS--MRDIFDSLERRC 458 (463)
Q Consensus 426 ~~~~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~ 458 (463)
+.|......+..++...|+. |.++..++++.+
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp -TT-HHHHHHHHHHHT-------------------
T ss_pred -cccccccccccccccccccccccccccccccccc
Confidence 24666667777777777777 555555554443
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=3.2e-14 Score=130.74 Aligned_cols=288 Identities=15% Similarity=0.108 Sum_probs=202.1
Q ss_pred ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHccCCcHHHHHHH
Q 012442 128 RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG--VEQDVVAVNSLLSAICRQENQTSRALEF 205 (463)
Q Consensus 128 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 205 (463)
+..+|+..|..+......+..+...+..+|...+++++|+++|+.+.+.. ..-+..+|.+.+--+-+. -++.+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~-----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE-----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh-----HHHHH
Confidence 56778888888665555455677778888888888888888888887642 123556666666544322 22222
Q ss_pred HH-HhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 012442 206 LN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (463)
Q Consensus 206 ~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (463)
+. .+....+..+.+|.++.++|.-.++.+.|++.|++..+ ++|+...+|+.+..-+.....+|.|...|+......
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 22 23334456778888888888888888888888888854 477777888888888888888888888888776543
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHH
Q 012442 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP-DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC 363 (463)
Q Consensus 285 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (463)
+-+-..|--+.-.|.+.++++.|+-.|+.+.. +.| +.+....+...+-+.|+.|+|+++++++.... +-|...-
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~ 560 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCK 560 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhH
Confidence 11223455566778888888888888887543 333 45666667777788888888888888888776 5566655
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCH
Q 012442 364 ATAITMLLDADEPEIAIEIWNYILENGILPL-EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE 430 (463)
Q Consensus 364 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 430 (463)
-.-+..+...++.++|+..++++++ +.|+ ..+|..+...|.+.|+.+.|+.-|--+.+.+.+...
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5666677777888888888888887 3444 446666677888888888888888777766544443
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=4.8e-12 Score=106.62 Aligned_cols=288 Identities=14% Similarity=0.135 Sum_probs=163.9
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCChHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS----LPTFASIFDSYCGAGKYDE 165 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~ 165 (463)
....+++.|.++|-.+.+..+.+..+.-+|.+.|-+.|..++|+++...+.+..-.+ ..+.-.|.+-|...|-+|.
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 445667777777776666666666666677777777777777777776655543211 2244455666667777777
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 012442 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPD----GDSFAILLEGWEKEGNVEEANKTF 240 (463)
Q Consensus 166 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 240 (463)
|+++|..+.+.| .--......|+..|-.. .+|++|+++-+++.. +.++. ...|..+...+....+.+.|..++
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQAT-REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 777777776544 33344556666666666 777777777666554 22221 123445555555566666666666
Q ss_pred HHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcC
Q 012442 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320 (463)
Q Consensus 241 ~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 320 (463)
....+. .|..+.+--.+.+.....|++++|.+.++...+.+..--..+...|..+|.+.|+.++....+..++..
T Consensus 204 ~kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~-- 278 (389)
T COG2956 204 KKALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET-- 278 (389)
T ss_pred HHHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--
Confidence 666544 454455555556666666777777777776666653333445566666666666666666666664432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhC---CCCHHHHHHHHHHHH
Q 012442 321 AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD---ADEPEIAIEIWNYIL 387 (463)
Q Consensus 321 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~ 387 (463)
.++...-..+-+.-....-.+.|..++.+-+.. +|+...+..+|..-.. -|...+-...++.|.
T Consensus 279 -~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 279 -NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred -cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 222233333333333334445555555444444 4666666666654432 223344444444444
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.64 E-value=2.8e-12 Score=122.80 Aligned_cols=349 Identities=13% Similarity=0.054 Sum_probs=233.6
Q ss_pred cCCchHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC----ChHHH
Q 012442 92 YDSPSSAVDFFRWAGRGQRLS-PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG----KYDEA 166 (463)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~~~~A 166 (463)
.|+++.|..+|-......+.+ +..+--|...+.+.|+++.+...|+......+.+..+...|...|...+ ..+.|
T Consensus 320 ~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred hccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 489999999998777633333 5667778888999999999999999988888777888888888777775 45666
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012442 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK-----KIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241 (463)
Q Consensus 167 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (463)
..++.+..+.- +.|...|-.+-..+-. ++...++.+|.... .+.++-+...|.+...+...|++.+|...|+
T Consensus 400 ~~~l~K~~~~~-~~d~~a~l~laql~e~--~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~ 476 (1018)
T KOG2002|consen 400 SNVLGKVLEQT-PVDSEAWLELAQLLEQ--TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFK 476 (1018)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHH
Confidence 66666665542 4455556555555443 44444466655533 1444666667777777777777777777766
Q ss_pred HHHHhcC--CCCc-----hHhhHHHHHHHHHcc----------------------------------CCHHHHHHHHHHH
Q 012442 242 EMVERFE--WNPE-----HVLAYETFLITLIRG----------------------------------KQVDEALKFLRVM 280 (463)
Q Consensus 242 ~~~~~~~--~~p~-----~~~~~~~li~~~~~~----------------------------------~~~~~a~~~~~~m 280 (463)
....+.. ..++ +..+-..+...+-.. +...+|...+...
T Consensus 477 ~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~ 556 (1018)
T KOG2002|consen 477 SALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDA 556 (1018)
T ss_pred HHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHH
Confidence 6654300 1111 111112222223333 3444455555544
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------------cCCHhHHHHHH
Q 012442 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK------------NKRVHEVEKFF 348 (463)
Q Consensus 281 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~------------~~~~~~a~~~~ 348 (463)
...+ ..+...+..+...+.+...+..|.+-|+.+.......+|.++.-+|...|.+ .+..++|+++|
T Consensus 557 l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y 635 (1018)
T KOG2002|consen 557 LNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLY 635 (1018)
T ss_pred Hhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 4332 2334444445556666666666666666554444445677666666665543 23567899999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCc
Q 012442 349 HEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN-RRIL 427 (463)
Q Consensus 349 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~ 427 (463)
.+.++.. +-|...-+.+.-.++..|++.+|..+|.+..+... -+..+|--+.++|..+|+|..|+++|+...+ ..-.
T Consensus 636 ~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~ 713 (1018)
T KOG2002|consen 636 GKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK 713 (1018)
T ss_pred HHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9988876 77888888888899999999999999999988643 2445888899999999999999999998554 4555
Q ss_pred cCHHHHHHHHHHHHHhcch
Q 012442 428 IYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 428 ~~~~~~~~ll~~~~~~g~~ 446 (463)
-+......|-+++.+.|.+
T Consensus 714 ~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 714 NRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred CCHHHHHHHHHHHHHhhhH
Confidence 6778888999999999988
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=3.3e-13 Score=124.24 Aligned_cols=266 Identities=12% Similarity=0.062 Sum_probs=161.6
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012442 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK---IVDPDGDSFAILLEGWEKEGNVEEANK 238 (463)
Q Consensus 162 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~ 238 (463)
+..+|...|.++... +.-+..+...+-.+|... +++++|+++|+.+++ -..-+..+|.+.+-.+-+.= ++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl-~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFEL-IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHH
Confidence 346677777774433 233334455566677777 777777777777765 22345566666664442211 111
Q ss_pred H-HHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 012442 239 T-FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317 (463)
Q Consensus 239 ~-~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 317 (463)
. -+.+.+ ..|+.+.+|-++.+.|...++.+.|++.|++....+ +-...+|+.+..-+.....+|.|...|+..
T Consensus 408 ~Laq~Li~---~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~A-- 481 (638)
T KOG1126|consen 408 YLAQDLID---TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKA-- 481 (638)
T ss_pred HHHHHHHh---hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhh--
Confidence 1 122222 234455577777777777777777777777776654 114566777777777777777777777764
Q ss_pred hcCCCCCHHHHH---HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC
Q 012442 318 FHGAFPDSLTYN---MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394 (463)
Q Consensus 318 ~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 394 (463)
+..|...|| -|...|.+.++++.|+-.|+++.+.+ +-+.+....+...+.+.|+.++|+.+++++...+.+ |
T Consensus 482 ---l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n 556 (638)
T KOG1126|consen 482 ---LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-N 556 (638)
T ss_pred ---hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-C
Confidence 233444443 34456777777777777777777765 556666667777777777777777777777765432 3
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccC-HHHHHHHHHHHHHhcch
Q 012442 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY-EVTMHKLKKAFYNESRS 446 (463)
Q Consensus 395 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~ 446 (463)
+..--..+..+...+++++|+..++++++. .|+ ...|-.+.+.|.+-|+.
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccc
Confidence 333333455566677777777777777654 343 34455556666666665
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=5.2e-12 Score=106.42 Aligned_cols=289 Identities=13% Similarity=0.094 Sum_probs=194.1
Q ss_pred hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHH------HHHHHHHHHHccCCc
Q 012442 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV------AVNSLLSAICRQENQ 198 (463)
Q Consensus 125 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~------~~~~ll~~~~~~~~~ 198 (463)
-+.+.++|.+.|-+|.+.++.+.++--+|.+.|.+.|..+.|+++.+.+.+ .||.. ....|..-|... |-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~qL~~Dym~a-Gl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQLGRDYMAA-GL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHHHHHh-hh
Confidence 357889999999999998777788888999999999999999999999886 35432 233455566677 88
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchH---hhHHHHHHHHHccCCHHHHHH
Q 012442 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV---LAYETFLITLIRGKQVDEALK 275 (463)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~~li~~~~~~~~~~~a~~ 275 (463)
+|.|+.+|..+.+...--......|+..|-+..+|++|+++-+++.+- +-.+... ..|.-+...+....+.+.|..
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 888888888877644445566777888888888888888888877763 4333221 234455555666677888888
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 012442 276 FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355 (463)
Q Consensus 276 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 355 (463)
++.+..+.+ +-....-..+.+.+...|+++.|++.++.+ ...+..--..+...|..+|.+.|+.++....+.++.+..
T Consensus 202 ~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v-~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 202 LLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERV-LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 888777765 222333445556777788888888888874 333333334566777778888888888888888777753
Q ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc---CCCHHHHHHHHHHHHHC
Q 012442 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN---LGRLSDVRRFAEEMLNR 424 (463)
Q Consensus 356 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~ 424 (463)
++...-..+-..-....-.+.|..++.+-.. -.|+...+..|+..... .|...+.+..++.|...
T Consensus 280 --~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 --TGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred --CCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3333333444433444445556655555444 25777777777775433 34466666677777644
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=7.9e-12 Score=109.99 Aligned_cols=349 Identities=13% Similarity=0.086 Sum_probs=246.9
Q ss_pred CCchHHHHHHHHhcCCCC-CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHH
Q 012442 93 DSPSSAVDFFRWAGRGQR-LS----PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167 (463)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 167 (463)
+.+..|+++|+.+....+ .+ ....+.+.-.|.+.|+++.|+..|+...+..+.-...||.+ -++.--|+.++..
T Consensus 251 r~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~-i~~f~i~d~ekmk 329 (840)
T KOG2003|consen 251 REFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLI-ICAFAIGDAEKMK 329 (840)
T ss_pred hhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhh-hhheecCcHHHHH
Confidence 889999999998876222 22 34566666778889999999999998887765334445544 4455568888888
Q ss_pred HHHHHHHhCCCCcC------------HHHHHH------------------------------------------------
Q 012442 168 MSFDVMSMHGVEQD------------VVAVNS------------------------------------------------ 187 (463)
Q Consensus 168 ~~~~~m~~~g~~~~------------~~~~~~------------------------------------------------ 187 (463)
+.|.+|......+| ....+.
T Consensus 330 eaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~l 409 (840)
T KOG2003|consen 330 EAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESL 409 (840)
T ss_pred HHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHH
Confidence 88888865432221 111100
Q ss_pred ---------------HHHHHHccCCcHHHHHHHHHHhhcC-CCCCHHHHHHH--HH------------------------
Q 012442 188 ---------------LLSAICRQENQTSRALEFLNRVKKI-VDPDGDSFAIL--LE------------------------ 225 (463)
Q Consensus 188 ---------------ll~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l--~~------------------------ 225 (463)
-..-+.+. |+++.|++++....+. .+.-...-+.| +.
T Consensus 410 k~s~~~~la~dlei~ka~~~lk~-~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry 488 (840)
T KOG2003|consen 410 KASQHAELAIDLEINKAGELLKN-GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY 488 (840)
T ss_pred HHhhhhhhhhhhhhhHHHHHHhc-cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc
Confidence 01124556 9999999998877651 11111111111 11
Q ss_pred ----------HHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012442 226 ----------GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295 (463)
Q Consensus 226 ----------~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 295 (463)
.....|++++|.+.|++.... ...-..+.-.+.-.+-..|++++|++.|-++... +..+..+...+
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~n---dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qi 564 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNN---DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQI 564 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcC---chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHH
Confidence 112467889999999888764 1111122223344566779999999999888654 33467778888
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCC
Q 012442 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375 (463)
Q Consensus 296 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 375 (463)
.+.|--..+...|++++.+. ..-++.|+....-|...|-+.|+-.+|.+.+-+--+. ++.|..+...|...|....-
T Consensus 565 aniye~led~aqaie~~~q~--~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQA--NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHh--cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHH
Confidence 88899999999999988763 2335667888999999999999999999887765554 58899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHH-HHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch-hhhHHHH
Q 012442 376 PEIAIEIWNYILENGILPLEASANELLV-GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS-MRDIFDS 453 (463)
Q Consensus 376 ~~~a~~~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-a~~~~~~ 453 (463)
++++..+|++..- +.|+..-|..|+. ++.+.|++++|+++|++...+ ++-|.....-|++.|...|-. +.+..+.
T Consensus 642 ~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d~key~~k 718 (840)
T KOG2003|consen 642 SEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKDAKEYADK 718 (840)
T ss_pred HHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchhHHHHHHH
Confidence 9999999998775 7899999999887 566789999999999998764 667888889999998888765 4444433
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4e-11 Score=105.95 Aligned_cols=326 Identities=12% Similarity=0.057 Sum_probs=232.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHH-----------------------------HHHH
Q 012442 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF-----------------------------DSYC 158 (463)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li-----------------------------~~~~ 158 (463)
+...|...+......+-+.|....|.+.|......-+....+|..|. .++-
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 55677777777777888889999999988887765554544444332 2333
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHhcCCHHH
Q 012442 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD---PDGDSFAILLEGWEKEGNVEE 235 (463)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 235 (463)
.....+++++=.+.....|+.-+...-+....+.... .|+++|+.+|+++.+..+ .|..+|+.++-.-..+.++.-
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~-rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQ-RDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 3445566666666666666544443333333344444 888888888888877433 355667666644333222222
Q ss_pred -HHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 236 -ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 236 -a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
|..++ .+ ....| .|+..+.+-|.-.++.++|...|+...+.+ +-....|+.+..-|....+...|.+-++.
T Consensus 318 LA~~v~-~i---dKyR~---ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 318 LAQNVS-NI---DKYRP---ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHH-Hh---ccCCc---cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 22222 12 23444 377788888888999999999999999876 33467788888999999999999999998
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC
Q 012442 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394 (463)
Q Consensus 315 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 394 (463)
++.- .+.|-..|-.|.++|.-.+.+.-|+-+|++..+.. +-|...|.+|.++|.+.++.++|.+.|......|- .+
T Consensus 390 Avdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te 465 (559)
T KOG1155|consen 390 AVDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TE 465 (559)
T ss_pred HHhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cc
Confidence 6442 24577899999999999999999999999999886 77899999999999999999999999999998763 36
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHH----CCCccCHH--HHHHHHHHHHHhcch
Q 012442 395 EASANELLVGLRNLGRLSDVRRFAEEMLN----RRILIYEV--TMHKLKKAFYNESRS 446 (463)
Q Consensus 395 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~--~~~~ll~~~~~~g~~ 446 (463)
...+..|...|-+.++.++|...|++-.+ .|...+.. ..--|...+.+.++.
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~ 523 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDF 523 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcch
Confidence 67899999999999999999998887665 24333322 222244555566655
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=4.4e-11 Score=113.95 Aligned_cols=329 Identities=12% Similarity=0.042 Sum_probs=250.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHH
Q 012442 121 DVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200 (463)
Q Consensus 121 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 200 (463)
..+...|++++|.+++.+..+..+.+...|.+|...|-..|+.+++...+-..-... +-|...|..+-....+. |.++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~-~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQL-GNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhc-ccHH
Confidence 334444999999999999999999999999999999999999999988776655433 55678888888888888 9999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHH----HHHHHHHccCCHHHHHHH
Q 012442 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE----TFLITLIRGKQVDEALKF 276 (463)
Q Consensus 201 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----~li~~~~~~~~~~~a~~~ 276 (463)
.|.-+|.+..+-.+++...+-.-+..|-+.|+...|...|.++....+ |.|..-+. .++..+...++-+.|.+.
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--PVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--chhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999998888888888889999999999999999999987522 33333333 345666777888999999
Q ss_pred HHHHhhCC-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCC---------------------------CCCHHHH
Q 012442 277 LRVMKGEN-CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA---------------------------FPDSLTY 328 (463)
Q Consensus 277 ~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---------------------------~~~~~~~ 328 (463)
++.....+ -..+...++.++..|.+...++.|....... ..... .++...
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~-~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDD-RNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHH-hccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 98887632 2345567889999999999999999888773 32111 122222
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 012442 329 NMIFECLIKNKRVHEVEKFFHEMIKNE--WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406 (463)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 406 (463)
.-++-++...+..+....+...+.+.. +.-+...|.-+..+|...|++.+|..+|..+......-+..+|..+.++|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 122333444555555555666666665 444567789999999999999999999999997655556789999999999
Q ss_pred cCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Q 012442 407 NLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRC 458 (463)
Q Consensus 407 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~a~~~~~~~~~~~ 458 (463)
..|.+++|.+.|+...... +.+...-.+|-..+.+.|+. +.+.+.+..+
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~--EkalEtL~~~ 509 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNH--EKALETLEQI 509 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCH--HHHHHHHhcc
Confidence 9999999999999998753 12334445566667888988 6666666554
No 42
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=1e-10 Score=101.67 Aligned_cols=286 Identities=13% Similarity=0.107 Sum_probs=166.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHH
Q 012442 126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205 (463)
Q Consensus 126 ~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 205 (463)
.|++..|++...+-.+.+..+...|..-..+--+.|+.+.+-..+.+..+..-.++...+-+........ |+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~-~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR-RDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC-CCchhHHHH
Confidence 4666666666666555555555556666666666666666666666666542244444555555555556 666666666
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch------HhhHHHHHHHHHccCCHHHHHHHHHH
Q 012442 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH------VLAYETFLITLIRGKQVDEALKFLRV 279 (463)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~~~~~li~~~~~~~~~~~a~~~~~~ 279 (463)
..++....+.+.........+|.+.|++.....+...+.+. +...+. ..+|+.++.-....+..+.-...++.
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66666555556666666666666666666666666666664 433311 13556666655555555555555555
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 012442 280 MKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359 (463)
Q Consensus 280 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (463)
.... .+.+...-..++.-+.++|+.++|.++..+..+ .+..|+. .. .-.+.+-++.+.-.+..++-.... +.+
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRL---CR-LIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhH---HH-HHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 4333 234455555666666666777777666666333 3333331 11 112344455555555555544432 344
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012442 360 PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422 (463)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 422 (463)
+..+.+|...|.+.+.+.+|.+.|+...+ ..|+..+|+-+.+++.+.|+.++|.+..++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 45666666666677777777777765555 44566667767777777777777766666654
No 43
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.56 E-value=3e-11 Score=115.90 Aligned_cols=357 Identities=13% Similarity=0.180 Sum_probs=216.3
Q ss_pred CchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHhcCChHHHHHHH
Q 012442 94 SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSF 170 (463)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (463)
....+..++..+-...+.|+...+.|...|--.|++..++.+.+.+..... .-...|-.+.++|-..|++++|...|
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 344555565555556667777777788888888888888887777665542 23445777777888888888888887
Q ss_pred HHHHhCCCCcCH--HHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 012442 171 DVMSMHGVEQDV--VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG----NVEEANKTFGEMV 244 (463)
Q Consensus 171 ~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~ 244 (463)
.+..+. .+|. ..+..|...+.+. |+.+.+...|+.+....+.+..+...|...|+..+ ..+.|..++....
T Consensus 331 ~~s~k~--~~d~~~l~~~GlgQm~i~~-~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 331 MESLKA--DNDNFVLPLVGLGQMYIKR-GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHcc--CCCCccccccchhHHHHHh-chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 777654 3333 3344566677777 78888888877777766667777777777776664 4455555555554
Q ss_pred HhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHH----hhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcC
Q 012442 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM----KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320 (463)
Q Consensus 245 ~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 320 (463)
+. .|.|...|-.+...+-..+-+.. +..|... ...+-.+.....|.+.......|+++.|...|........
T Consensus 408 ~~---~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 408 EQ---TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred hc---ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 43 35555555555555444433332 4433322 2333334455555555555555555555555554322100
Q ss_pred --CCCCH--------------------------HHH-------HHHHHHHHHc-------CCHhHHHHHHHHHHHCC-CC
Q 012442 321 --AFPDS--------------------------LTY-------NMIFECLIKN-------KRVHEVEKFFHEMIKNE-WQ 357 (463)
Q Consensus 321 --~~~~~--------------------------~~~-------~~li~~~~~~-------~~~~~a~~~~~~~~~~~-~~ 357 (463)
..++. ..| -..|++|.+. +...+|...+....+.. -.
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n 563 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN 563 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC
Confidence 00111 000 0112222222 34445555555544321 12
Q ss_pred ----------------------------------CCHHHHHHHHHHHhC------------CCCHHHHHHHHHHHHHcCC
Q 012442 358 ----------------------------------PTPLNCATAITMLLD------------ADEPEIAIEIWNYILENGI 391 (463)
Q Consensus 358 ----------------------------------~~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~ 391 (463)
+|..+...|.+.|.+ .+..++|+++|.+.++..
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d- 642 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND- 642 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-
Confidence 233333344443332 234678888888888764
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch--hhhHHHHHHHHHh
Q 012442 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERRCK 459 (463)
Q Consensus 392 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~~ 459 (463)
+-|...-|-+.-.++..|++.+|..+|.+.++... -+..+|.-+..+|...|++ |+++++..+++.-
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34677777888899999999999999999988754 3445778888999999999 8888888887754
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=1.3e-10 Score=101.10 Aligned_cols=280 Identities=16% Similarity=0.099 Sum_probs=198.2
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012442 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANK 238 (463)
Q Consensus 160 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 238 (463)
.|++..|++...+-.+.+ +.....|..-..+-.+. |+.+.+-.++.+..+ ...++....-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qr-gd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQR-GDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhc-ccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 588888888888877765 33344555555666666 888888888888776 345666777777888888888888888
Q ss_pred HHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHHcCCHhHHHHH
Q 012442 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-------KFFSNALDILVKLNDSTHAVQL 311 (463)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~ 311 (463)
-++++.+. .|.+.........+|.+.|++.....++.+|.+.|.--+. .+|..+++-....+..+.-...
T Consensus 175 ~v~~ll~~---~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 175 NVDQLLEM---TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHh---CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 88887553 6666778888888888888888888888888888765444 4677777777776666666667
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 012442 312 WDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI 391 (463)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 391 (463)
|+..-. ..+.++..-.+++.-+.++|+.++|.++..+..+++..|+ -...-.+.+-++.+.-.+..++-.+. .
T Consensus 252 W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h 324 (400)
T COG3071 252 WKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-H 324 (400)
T ss_pred HHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-C
Confidence 766322 2344555666777778888888888888888887765554 12223455666776666666665543 1
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcchhhhHHHHHH
Q 012442 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLE 455 (463)
Q Consensus 392 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~a~~~~~~~~ 455 (463)
+-++..+.+|...|.+.+.|.+|.+.|+...+. .|+..+|..+-.++.+.|+. ..++++.
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~--~~A~~~r 384 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEP--EEAEQVR 384 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCh--HHHHHHH
Confidence 223467778888888888888888888866544 57888888888888888888 4444433
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=4.2e-10 Score=99.86 Aligned_cols=358 Identities=15% Similarity=0.062 Sum_probs=229.4
Q ss_pred cCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 012442 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171 (463)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (463)
.++...|..+|+.+..+...+...|-..+.+-.++++++.|..+++.....=+--...|--.+.+=-..|++..|.++|+
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 45666777788777776677777777777777777777777777777655433223345555555555677777777777
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC---
Q 012442 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE--- 248 (463)
Q Consensus 172 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--- 248 (463)
.-.+- .|+...|++.|+.=.+. +..+.|..+++...- +.|++.+|.-....=.+.|+...+.++|....+..|
T Consensus 166 rW~~w--~P~eqaW~sfI~fElRy-keieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 166 RWMEW--EPDEQAWLSFIKFELRY-KEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHcC--CCcHHHHHHHHHHHHHh-hHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 76654 67777777777766666 667777777766543 226666665555555555555555555444433211
Q ss_pred ---------------------------------------------------------------------------CCCch
Q 012442 249 ---------------------------------------------------------------------------WNPEH 253 (463)
Q Consensus 249 ---------------------------------------------------------------------------~~p~~ 253 (463)
-+|-|
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 12323
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH--HHHHHH--------HHHHHHcCCHhHHHHHHHHHHHhcCCCC
Q 012442 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL--KFFSNA--------LDILVKLNDSTHAVQLWDIMMVFHGAFP 323 (463)
Q Consensus 254 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l--------l~~~~~~g~~~~a~~~~~~~~~~~~~~~ 323 (463)
-.+|-..+..--..|+.+...++|++.... ++|-. ..|... +-.-....+.+.+.++|+..+. -++.
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPH 398 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPH 398 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCc
Confidence 344555555555557777777777776654 34422 111111 1111245677777777776544 2444
Q ss_pred CHHHHHHHHHHHH----HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 012442 324 DSLTYNMIFECLI----KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399 (463)
Q Consensus 324 ~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 399 (463)
...||.-+--.|+ ++.++..|.+++...+ |..|-..+|...|..=.+.++++.+.+++++.++.+. -|..+|.
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~ 475 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWS 475 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHH
Confidence 4455544433333 4667788888887776 4478888888888888888999999999999998663 3677888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCC-ccCHHHHHHHHHHHHHhcch--hhhHHHHHHHHHh
Q 012442 400 ELLVGLRNLGRLSDVRRFAEEMLNRRI-LIYEVTMHKLKKAFYNESRS--MRDIFDSLERRCK 459 (463)
Q Consensus 400 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~~ 459 (463)
.....-...|+.+.|..+|+-..+... .-....|...|.-=..+|.. |+.+++.++++-+
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 888888888999999999998876632 22345566666666777877 7777777776543
No 46
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.55 E-value=1e-09 Score=101.24 Aligned_cols=343 Identities=10% Similarity=0.003 Sum_probs=209.6
Q ss_pred CCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH----HHHcCC-CCHHHHHHHHHHHHhcCChHHHH
Q 012442 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRV----MKEDGV-LSLPTFASIFDSYCGAGKYDEAV 167 (463)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~-~~~~~~~~li~~~~~~g~~~~A~ 167 (463)
..++.|.++++.+.+.++.+...|.+-...--.+|+.+...+++++ +...|+ .+...|-.=...|-..|..--+.
T Consensus 420 etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence 3457788888888888899999998888888888888888888765 334554 46666777677777777777777
Q ss_pred HHHHHHHhCCCCc--CHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012442 168 MSFDVMSMHGVEQ--DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 168 ~~~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
.+....+..|++- -..||+.-...|.+. +.++-|..+|....+-++.+...|......=-..|..+....+|++...
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~-~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~ 578 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKR-PAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE 578 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhc-chHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777666665442 235666666666666 6666666666666665566666666666555556666666666666655
Q ss_pred hcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCH
Q 012442 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325 (463)
Q Consensus 246 ~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 325 (463)
. .|.....|-.....+-..|+...|..++....+.. +.+...|-..+..-.....++.|..+|.+.. +..|+.
T Consensus 579 ~---~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar---~~sgTe 651 (913)
T KOG0495|consen 579 Q---CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKAR---SISGTE 651 (913)
T ss_pred h---CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcc
Confidence 3 34344455555555666666666666666666554 2345566666666666666666666666532 233444
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 012442 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405 (463)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 405 (463)
..|.--+..---.++.++|.+++++.++. ++.-...|..+.+.+-+.++++.|.+.|..-.+. ++.....|-.|...-
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakle 729 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLE 729 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHH
Confidence 45544444444456666666666666554 2333445555555666666666666655544332 222233444444555
Q ss_pred HcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 406 RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 406 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
-+.|..-.|..++++.+-++. -+...|-..|+.=.+.|..
T Consensus 730 Ek~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNK 769 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCH
Confidence 555666666666666655542 3445555666666666655
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.54 E-value=1e-11 Score=107.63 Aligned_cols=202 Identities=14% Similarity=0.127 Sum_probs=143.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012442 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295 (463)
Q Consensus 216 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 295 (463)
....+..+...+...|++++|.+.+++..+. .|.+...+..+...+...|++++|.+.+++..+.+ +.+...+..+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~ 105 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH---DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 3456667777777788888888888777654 46566677777777778888888888888777654 3345566677
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCC
Q 012442 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375 (463)
Q Consensus 296 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 375 (463)
...+...|++++|.+.++.+............+..+...+...|++++|...+.+..+.. +.+...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC
Confidence 777778888888888888754432222334456666777778888888888888877764 4456677777788888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012442 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 376 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
+++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888888887765 234555666677777778888888887777654
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.8e-11 Score=104.15 Aligned_cols=289 Identities=13% Similarity=0.124 Sum_probs=217.8
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHccCCcH
Q 012442 123 LGKNGRFEQMWNAVRVMKEDGVLS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV--EQDVVAVNSLLSAICRQENQT 199 (463)
Q Consensus 123 ~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~ 199 (463)
+-...+.+++..-.+.....|.++ ...-+....+.-...+++.|+.+|+++.+... --|..+|..++-.--..
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~---- 312 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK---- 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh----
Confidence 334456666777777777777664 33334444556677899999999999998731 12566777666432221
Q ss_pred HHHHHHHH-HhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHH
Q 012442 200 SRALEFLN-RVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278 (463)
Q Consensus 200 ~~a~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~ 278 (463)
..+.++. ...+-.+--+.|+..+.+-|.-.++.++|...|+...+ ++|....+|+.+..-|...++...|.+-++
T Consensus 313 -skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 -SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred -HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 2222222 22223345567888899999999999999999999965 478778899999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 012442 279 VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358 (463)
Q Consensus 279 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (463)
...+.+ +-|-..|-.|..+|.-.+...-|.-+|++..... +-|...|.+|.++|.+.++.++|.+.|......| ..
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 999875 6688899999999999999999999999864422 3477899999999999999999999999999988 55
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCCCC-hh-hHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012442 359 TPLNCATAITMLLDADEPEIAIEIWNYILE----NGILPL-EA-SANELLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
+...+..|.+.|-+.++.++|-..|++.++ .|...+ .. .---|..-+.+.+++++|..+......
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 778899999999999999999999887765 233222 11 222255577788999988877666543
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.51 E-value=2.2e-11 Score=118.60 Aligned_cols=248 Identities=12% Similarity=0.037 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHH
Q 012442 130 EQMWNAVRVMKEDGVLSLPTFASIFDSYC---------GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200 (463)
Q Consensus 130 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 200 (463)
++|...|++..+..+.+...|..+..++. ..+++++|...+++..+.. +-+...+..+...+... |+++
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~-g~~~ 355 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH-SEYI 355 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc-cCHH
Confidence 67888888888777766666766665544 2244788888888887764 44566666666677777 8888
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 012442 201 RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280 (463)
Q Consensus 201 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m 280 (463)
+|...|++..+..+.+...+..+...+...|++++|...+++..+. .|.+...+..++..+...|++++|...+++.
T Consensus 356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 8888888877766667778888888888888888888888888654 5644444444455566678888888888887
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC-CCC
Q 012442 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD-SLTYNMIFECLIKNKRVHEVEKFFHEMIKNE-WQP 358 (463)
Q Consensus 281 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~ 358 (463)
.+...+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|+..| ++|...++.+.+.. ..+
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 76542223445666777778888888888888774222 233 334455555666666 47777777765531 122
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 012442 359 TPLNCATAITMLLDADEPEIAIEIWNYILENG 390 (463)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 390 (463)
....+..++ |.-.|+-+.+... +++.+.+
T Consensus 508 ~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLV--LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHH--HHHHhhhHHHHHH-HHhhccc
Confidence 222223333 3334555555544 6666543
No 50
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.50 E-value=2e-09 Score=99.37 Aligned_cols=335 Identities=10% Similarity=0.012 Sum_probs=184.0
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 012442 96 SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175 (463)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (463)
+-|+.+|..+.+-++.+...|......--..|..+....+|++....-+.....|-.....+-..|++..|..++....+
T Consensus 533 ~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~ 612 (913)
T KOG0495|consen 533 ECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFE 612 (913)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 44555555555555555555555555555555556655666655555544455555555555555666666666666555
Q ss_pred CCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHh
Q 012442 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255 (463)
Q Consensus 176 ~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 255 (463)
.. +-+...|-+-+..-..+ ..++.|..+|.+... ..|+..+|..-++.---.++.++|.+++++..+. -|+-..
T Consensus 613 ~~-pnseeiwlaavKle~en-~e~eraR~llakar~-~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~K 686 (913)
T KOG0495|consen 613 AN-PNSEEIWLAAVKLEFEN-DELERARDLLAKARS-ISGTERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHK 686 (913)
T ss_pred hC-CCcHHHHHHHHHHhhcc-ccHHHHHHHHHHHhc-cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHH
Confidence 43 23455555555555555 666666666655544 2345555554444444455666666666555544 333333
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 012442 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335 (463)
Q Consensus 256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 335 (463)
.|-.+...+-+.++.+.|.+.|..-.+. ++-..-.|..+...--+.|.+-+|..+++.... . -+.+...|...|++-
T Consensus 687 l~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl-k-NPk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 687 LWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL-K-NPKNALLWLESIRME 763 (913)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh-c-CCCcchhHHHHHHHH
Confidence 5555555555555666555555544332 233344455555555555566666666665321 1 233555566666666
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHH
Q 012442 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415 (463)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 415 (463)
.+.|+.+.|..+..+.++. ++.+...|..-|...-+.++-......++ + ...|..+.-.+...+....++++|.
T Consensus 764 lR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk---k--ce~dphVllaia~lfw~e~k~~kar 837 (913)
T KOG0495|consen 764 LRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK---K--CEHDPHVLLAIAKLFWSEKKIEKAR 837 (913)
T ss_pred HHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH---h--ccCCchhHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655554 24444445444444444444222222221 1 3345556666666777777788888
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 416 RFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 416 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
++|.+..+.+- -+..+|..+.+.+.+.|..
T Consensus 838 ~Wf~Ravk~d~-d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 838 EWFERAVKKDP-DNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HHHHHHHccCC-ccchHHHHHHHHHHHhCCH
Confidence 88888776542 3456777777777777755
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.50 E-value=3.5e-11 Score=104.34 Aligned_cols=196 Identities=13% Similarity=0.062 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012442 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (463)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 192 (463)
...+..+...+...|++++|.+.+++..+..+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566666677777777777777776666655556666666666777777777777776666543 33444555555555
Q ss_pred HccCCcHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCH
Q 012442 193 CRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270 (463)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 270 (463)
... |++++|.+.+++.... .+.....+..+...+...|++++|.+.+++..+. .|++...+..+...+...|++
T Consensus 110 ~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 110 CQQ-GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHc-ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCH
Confidence 555 6666666666665441 1223344555555566666666666666665443 343444555555555666666
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
++|...+++.... .+.+...+..+...+...|+.+.|..+.+.
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6666666655544 223344444455555555555555555544
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.50 E-value=7.9e-11 Score=114.74 Aligned_cols=267 Identities=13% Similarity=0.027 Sum_probs=165.0
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHH---------ccCCcHHHHHHHHHHh
Q 012442 145 LSLPTFASIFDSYCG-----AGKYDEAVMSFDVMSMHGVEQD-VVAVNSLLSAIC---------RQENQTSRALEFLNRV 209 (463)
Q Consensus 145 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~---------~~~~~~~~a~~~~~~~ 209 (463)
.+...|...+++... .+++++|.+.|++..+. .|+ ...|..+..++. .. +++++|...+++.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~-~~~~~A~~~~~~A 330 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQ-NAMIKAKEHAIKA 330 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccc-hHHHHHHHHHHHH
Confidence 455666666655322 23467888888888765 444 334444433332 22 4577888888887
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 012442 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289 (463)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 289 (463)
.+..+.+...+..+...+...|++++|...|++..+. .|++...+..+...+...|++++|...+++..+.+.. +.
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL---SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 7766667778888888888888888888888888654 6767777888888888888888888888888776521 22
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012442 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369 (463)
Q Consensus 290 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 369 (463)
..+..++..+...|++++|...++++.... .+-+...+..+...+...|+.++|...+.++.... +.+....+.+...
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~ 484 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAE 484 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHH
Confidence 233334445666788888888887744322 11134445666667777888888888887765542 2233334455556
Q ss_pred HhCCCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 012442 370 LLDADEPEIAIEIWNYILEN-GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425 (463)
Q Consensus 370 ~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 425 (463)
|+..| ++|...++.+.+. ...+....+ +-..|.-.|+-+.+..+ +++.+.|
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66666 4666666665542 112222222 33344455666655555 6666554
No 53
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.50 E-value=2.2e-10 Score=108.01 Aligned_cols=290 Identities=12% Similarity=0.065 Sum_probs=165.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-cc----
Q 012442 121 DVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC-RQ---- 195 (463)
Q Consensus 121 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~-~~---- 195 (463)
..+...|++++|++.++.-...-+.....+......+.+.|+.++|..+|..+++.+ |+...|...+..+. ..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 345566777777777765444333335556666667777777777777777777653 44444443333333 11
Q ss_pred CCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHH
Q 012442 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE-EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274 (463)
Q Consensus 196 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~ 274 (463)
..+.+...++|+++....+ .......+.-.+.....+. .+..++..+..+ |+.+ +|+.+-..|....+.+-..
T Consensus 90 ~~~~~~~~~~y~~l~~~yp-~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPs----lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYP-RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPS----LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccHHHHHHHHHHHHHhCc-cccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCch----HHHHHHHHHcChhHHHHHH
Confidence 0245666666666655332 2222211211111212222 233444445554 5332 5666666666555555555
Q ss_pred HHHHHHhhC--------------CCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHH
Q 012442 275 KFLRVMKGE--------------NCFPTL--KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD-SLTYNMIFECLIK 337 (463)
Q Consensus 275 ~~~~~m~~~--------------~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 337 (463)
+++...... .-+|+. .++..+...|-..|++++|.++++..+.. .|+ +..|..-...+-.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHH
Confidence 555554321 012333 34455566677788888888888875442 333 4566666777777
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChh------hH--HHHHHHHHcCC
Q 012442 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA------SA--NELLVGLRNLG 409 (463)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~--~~li~~~~~~g 409 (463)
.|++++|.+.++..+... .-|...-+-.+..+.++|++++|.+++......+..|-.. .| .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888887776 5566666677777778888888888877776655433221 11 12334777788
Q ss_pred CHHHHHHHHHHHH
Q 012442 410 RLSDVRRFAEEML 422 (463)
Q Consensus 410 ~~~~a~~~~~~m~ 422 (463)
++..|++.|....
T Consensus 320 ~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 320 DYGLALKRFHAVL 332 (517)
T ss_pred hHHHHHHHHHHHH
Confidence 8877776665554
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=3.4e-11 Score=101.66 Aligned_cols=231 Identities=11% Similarity=0.006 Sum_probs=196.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 012442 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229 (463)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (463)
-+.+.++|.+.|-+.+|.+.|+.-++. .|-+.||..|-++|.+. ...+.|+.+|.+-.+..+-|+....-+...+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ri-dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRI-DQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHh-ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 367899999999999999999998876 68888999999999999 999999999999888888888778889999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 012442 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309 (463)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 309 (463)
.++.++|.++|+...+. .|.++.+..++..+|.-.++++-|+.+|+++...|+. +...|+.+.-+|.-.+++|-+.
T Consensus 303 m~~~~~a~~lYk~vlk~---~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL---HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHhHHHHHHHHHHHHhc---CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 99999999999999765 6767888888889999999999999999999999965 6788888888999999999999
Q ss_pred HHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 012442 310 QLWDIMMVFHGAFPD--SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387 (463)
Q Consensus 310 ~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 387 (463)
.-|++...... .|+ ...|..|-......|++..|.+.|+-.+..+ ..+...++.|.-.-.+.|++++|..+++...
T Consensus 379 ~sf~RAlstat-~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 379 PSFQRALSTAT-QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHhhcc-CcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 99888544322 232 3457777777777888888988888888776 5667788888888888888988888888877
Q ss_pred Hc
Q 012442 388 EN 389 (463)
Q Consensus 388 ~~ 389 (463)
..
T Consensus 457 s~ 458 (478)
T KOG1129|consen 457 SV 458 (478)
T ss_pred hh
Confidence 63
No 55
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=8.5e-11 Score=103.61 Aligned_cols=206 Identities=8% Similarity=0.040 Sum_probs=101.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012442 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238 (463)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 238 (463)
.+|++++|.+.|++.+...-.-....||+=+. +-.. |+.++|++.|-++...+..+..+...+.+.|-...+..+|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt-~e~~-~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLT-AEAL-GNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhccc-HHHh-cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 34555555555555553221111222222111 1222 555555555555544444455555555555555555555555
Q ss_pred HHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHh
Q 012442 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318 (463)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 318 (463)
++.+. ..+.|+|+...+.|...|-+.|+-.+|++.+-+--.. ++-+..|...|...|....-+++++.+|++.
T Consensus 580 ~~~q~---~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka--- 652 (840)
T KOG2003|consen 580 LLMQA---NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA--- 652 (840)
T ss_pred HHHHh---cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence 55544 2335555555555555555555555555554433222 3344455555555555555555555555553
Q ss_pred cCCCCCHHHHHHHHHHHH-HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCC
Q 012442 319 HGAFPDSLTYNMIFECLI-KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374 (463)
Q Consensus 319 ~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 374 (463)
.-+.|+..-|-.+|..|. +.|++++|+++|+...++ ++-|......|+..+...|
T Consensus 653 aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 653 ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 124555555555554333 345555555555555443 3555555555555555444
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.45 E-value=9.6e-09 Score=94.92 Aligned_cols=375 Identities=13% Similarity=0.105 Sum_probs=254.5
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHhccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH
Q 012442 68 IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL 147 (463)
Q Consensus 68 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 147 (463)
+.+.|.+.+-.++.-..-.+.-.|-|+.++|........++...+.+.|..+.-.+....++++|++.|......+..|.
T Consensus 30 ~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~ 109 (700)
T KOG1156|consen 30 IKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL 109 (700)
T ss_pred HHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH
Confidence 44556666777777777777777889999999999988888888999999999999999999999999999999999899
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcC--CCCCHHHHHHHH-
Q 012442 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--VDPDGDSFAILL- 224 (463)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~- 224 (463)
..|.-+.-.-++.|+++.......++.+.. +-....|..+..++.-. |+...|..+.+...+. -.|+...+.-..
T Consensus 110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~-g~y~~A~~il~ef~~t~~~~~s~~~~e~se~ 187 (700)
T KOG1156|consen 110 QILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL-GEYKMALEILEEFEKTQNTSPSKEDYEHSEL 187 (700)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 999988888888999999988888887652 33455677777777778 9999999999988772 346666555433
Q ss_pred -----HHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHH-HHHH
Q 012442 225 -----EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN-ALDI 298 (463)
Q Consensus 225 -----~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~ 298 (463)
....+.|..++|.+.+...... .-+....-..-...+.+.+++++|..++..+...+ ||..-|.. +..+
T Consensus 188 ~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 188 LLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHH
Confidence 2345677888888777766543 22122233445667788899999999999988875 66655544 4444
Q ss_pred HHHcCCHhHHH-HHHHHH---------------------------------HHhcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 012442 299 LVKLNDSTHAV-QLWDIM---------------------------------MVFHGAFPDSLTYNMIFECLIKNKRVHEV 344 (463)
Q Consensus 299 ~~~~g~~~~a~-~~~~~~---------------------------------~~~~~~~~~~~~~~~li~~~~~~~~~~~a 344 (463)
+.+..+.-++. .+|... .-..|+++ ++..+...|- +.+.+
T Consensus 263 lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk---~p~k~ 336 (700)
T KOG1156|consen 263 LGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYK---DPEKV 336 (700)
T ss_pred HHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHh---chhHh
Confidence 43333333333 444443 11122211 1222222221 11111
Q ss_pred HHHHHHHH--------HCC----------CCCCHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHH
Q 012442 345 EKFFHEMI--------KNE----------WQPTPLNC--ATAITMLLDADEPEIAIEIWNYILENGILPLE-ASANELLV 403 (463)
Q Consensus 345 ~~~~~~~~--------~~~----------~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~ 403 (463)
- +++++. ..| -+|....| -.++..|-+.|+++.|..+++..+++ .|+. ..|..-.+
T Consensus 337 ~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaR 413 (700)
T KOG1156|consen 337 A-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKAR 413 (700)
T ss_pred H-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHH
Confidence 1 222221 111 13444433 45677888899999999999988874 4443 35555567
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcchhhhHHHHHHHHHhhc
Q 012442 404 GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTS 461 (463)
Q Consensus 404 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~a~~~~~~~~~~~~~~ 461 (463)
.+...|++++|..++++..+.+. +|...-..-.+...+.++. +.+++++.+.-+.
T Consensus 414 I~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i--~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 414 IFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEI--EEAEEVLSKFTRE 468 (700)
T ss_pred HHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcccc--HHHHHHHHHhhhc
Confidence 88899999999999999887764 6655555667777777777 6666666555443
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=7.8e-11 Score=111.89 Aligned_cols=266 Identities=13% Similarity=0.075 Sum_probs=182.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH
Q 012442 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186 (463)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 186 (463)
|+.||.++|.++|.-|+..|+.+.|- +|.-|+..+.| +...|+.++.+..+.++.+.+. .|...+|.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 88999999999999999999999998 99999888864 7888999999999999888775 68889999
Q ss_pred HHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHc
Q 012442 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266 (463)
Q Consensus 187 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~ 266 (463)
.|+.+|... ||...-..+ ++ -...+...+...|.-.....++..+....+..| | -...+.-...
T Consensus 88 ~Ll~ayr~h-GDli~fe~v-eq----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lp-d---a~n~illlv~ 151 (1088)
T KOG4318|consen 88 NLLKAYRIH-GDLILFEVV-EQ----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLP-D---AENAILLLVL 151 (1088)
T ss_pred HHHHHHHhc-cchHHHHHH-HH----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccch-h---HHHHHHHHHH
Confidence 999999999 988772222 22 122344555566666666666655433334444 3 2334455556
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 012442 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346 (463)
Q Consensus 267 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 346 (463)
.|.++.+++++..+....... ++..+++-+.... ....++........+ .|+..+|.+++..-.-.|+++.|..
T Consensus 152 eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~n--tpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDN--TPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCC--chHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHH
Confidence 677777777776654322111 1111233333222 223333333222222 5788888888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCC
Q 012442 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR 410 (463)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 410 (463)
++.+|.+.|++.+.+-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+..+...|.
T Consensus 226 ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 88888888888888877777755 67777778888888888888888888877776666544
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=6.4e-10 Score=100.94 Aligned_cols=287 Identities=11% Similarity=0.036 Sum_probs=231.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 012442 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225 (463)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 225 (463)
+........+-|...+++.+..++++.+.+.. ++....+-.-|..+... |+..+...+-.++.+..|....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el-~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYEL-GKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHh-cccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 45556666777888999999999999998765 67777777778888888 99888888888888888899999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 012442 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305 (463)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 305 (463)
.|.-.|++.+|.+.|.... .+.|.-...|-.+..+|+-.|..++|...+...-+.- +-...-+--+.--|.+.+..
T Consensus 321 YYl~i~k~seARry~SKat---~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKAT---TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHh---hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 9999999999999999874 5566667799999999999999999999988765531 11222233344568889999
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHhCCCCHHHH
Q 012442 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN------EWQPTPLNCATAITMLLDADEPEIA 379 (463)
Q Consensus 306 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a 379 (463)
+.|.+.|.+.+... +-|+...+-+.-.....+.+.+|..+|+..++. ...-...+++.|..+|.+.+.+++|
T Consensus 397 kLAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999998864422 335666777766667788999999999988732 1123566789999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHh
Q 012442 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443 (463)
Q Consensus 380 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 443 (463)
+..+++..... +-+..++.++.-.|...|+++.|.+.|.+.. .+.|+..+...+++.+...
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 99999999864 4577899999999999999999999999876 5679988888888877666
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2e-09 Score=96.04 Aligned_cols=352 Identities=12% Similarity=0.107 Sum_probs=213.3
Q ss_pred ccCCchHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHH--
Q 012442 91 SYDSPSSAVDFFRWAGRGQRLS-PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV-- 167 (463)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~-- 167 (463)
..+.+++|+++|.|+.. ..|| ++-|.....+|...|+++++.+.-....+.++.-...+..-..++-..|++++|+
T Consensus 127 ~~kkY~eAIkyY~~AI~-l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIE-LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred hcccHHHHHHHHHHHHh-cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHh
Confidence 46899999999999986 4555 8899999999999999999998877777766544445555555555555555543
Q ss_pred --------------------HHHHHH--------Hh-CC--CCcCHHHHHHHHHHHHcc-------CC------------
Q 012442 168 --------------------MSFDVM--------SM-HG--VEQDVVAVNSLLSAICRQ-------EN------------ 197 (463)
Q Consensus 168 --------------------~~~~~m--------~~-~g--~~~~~~~~~~ll~~~~~~-------~~------------ 197 (463)
+++++. .+ .+ +-|+....++..+.+... .+
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~ 285 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALE 285 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHH
Confidence 222221 11 11 335655555555544221 00
Q ss_pred --------cHHHHHHHHHHhhc----CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhh
Q 012442 198 --------QTSRALEFLNRVKK----IVDPD---------GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256 (463)
Q Consensus 198 --------~~~~a~~~~~~~~~----~~~~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 256 (463)
.+..+...+.+-.. ....+ ..+...-...+.-.|+.-.|.+-|+....- .|.+...
T Consensus 286 ~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l---~~~~~~l 362 (606)
T KOG0547|consen 286 ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL---DPAFNSL 362 (606)
T ss_pred HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc---CcccchH
Confidence 11222222211100 01111 122222222344567777787778777653 4434444
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCC-CHHHHHHHHHHH
Q 012442 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP-DSLTYNMIFECL 335 (463)
Q Consensus 257 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~ 335 (463)
|-.+...|...++.++....|.+..+.+ +-+..+|..-...+.-.++++.|..=|++... +.| +...|-.+.-+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~---L~pe~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAIS---LDPENAYAYIQLCCAL 438 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh---cChhhhHHHHHHHHHH
Confidence 7777777888888888888888777765 34556666666777777777888777777433 333 344555555555
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-----CCh--hhHHHHHHHHHcC
Q 012442 336 IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL-----PLE--ASANELLVGLRNL 408 (463)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~--~~~~~li~~~~~~ 408 (463)
.+.+++++++..|++.+++ ++--+..|+.....+..+++++.|.+.|+..++.... .+. .+.-.++. +.-.
T Consensus 439 Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk 516 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchh
Confidence 6677788888888887766 4666777777778888888888888888777763211 111 11122221 1233
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch--hhhHHHH
Q 012442 409 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDS 453 (463)
Q Consensus 409 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--a~~~~~~ 453 (463)
+++..|..++++..+.+.+ ....|..|-+.-.+.|+. |+++|++
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7777777777777766533 335666777777777766 5555554
No 60
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=3.1e-08 Score=88.35 Aligned_cols=334 Identities=11% Similarity=0.077 Sum_probs=240.2
Q ss_pred CHHHHHHHHH-hccCCchHHHHHHH-HhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 012442 80 TPDLVHEVLQ-LSYDSPSSAVDFFR-WAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY 157 (463)
Q Consensus 80 ~~~~~~~~l~-~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~ 157 (463)
+...|.-+.. -..|+..-|.++|+ ||. ..|+..+|++.|+.-.+.+..+.|..+|+...--. |+..+|--....=
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE 217 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFE 217 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHH
Confidence 3334443333 45788888999886 553 68888899999999888888999998888765543 6677777777777
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH----cc-----------------------------------CCc
Q 012442 158 CGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC----RQ-----------------------------------ENQ 198 (463)
Q Consensus 158 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~----~~-----------------------------------~~~ 198 (463)
.+.|.+..|..+|....+. --|...-..+..+++ ++ -|+
T Consensus 218 ~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 218 EKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred HhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence 7777777777777766542 111111112222221 11 022
Q ss_pred HHHHHHH--------HHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchH-hhHHHHHHH------
Q 012442 199 TSRALEF--------LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV-LAYETFLIT------ 263 (463)
Q Consensus 199 ~~~a~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~~li~~------ 263 (463)
.....+. ++.+....+.|-.+|--.++.-...|+.+...++|+.... ++.|-.. ..|.-.|-.
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHHHHHHHHHHH
Confidence 2222221 2223334566777888888888889999999999999986 4444221 223322221
Q ss_pred --HHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----HHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 012442 264 --LIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL----VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337 (463)
Q Consensus 264 --~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (463)
-....+.+.+.++|+..++. ++...+||..+=-.| .++.++..|.+++... -|.-|..-+|-..|..=.+
T Consensus 374 yeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A---IG~cPK~KlFk~YIelElq 449 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA---IGKCPKDKLFKGYIELELQ 449 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH---hccCCchhHHHHHHHHHHH
Confidence 12348899999999999884 566677777665444 4678999999999875 4567888899999998899
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHcCCCHHHHHH
Q 012442 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-ILPLEASANELLVGLRNLGRLSDVRR 416 (463)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~ 416 (463)
.+.++.+..+|++.++.+ +-|..+|......=...|+.+.|..+|+-++... +......|.+.|+--...|.++.|..
T Consensus 450 L~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~ 528 (677)
T KOG1915|consen 450 LREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARA 528 (677)
T ss_pred HhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHH
Confidence 999999999999999997 7788999988888888999999999999988642 33345688888988899999999999
Q ss_pred HHHHHHHCC
Q 012442 417 FAEEMLNRR 425 (463)
Q Consensus 417 ~~~~m~~~~ 425 (463)
+++++.+..
T Consensus 529 LYerlL~rt 537 (677)
T KOG1915|consen 529 LYERLLDRT 537 (677)
T ss_pred HHHHHHHhc
Confidence 999998763
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.40 E-value=1.2e-12 Score=82.14 Aligned_cols=50 Identities=30% Similarity=0.430 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhC
Q 012442 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372 (463)
Q Consensus 323 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 372 (463)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777777664
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.39 E-value=1.1e-12 Score=82.36 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=37.3
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHH
Q 012442 393 PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442 (463)
Q Consensus 393 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 442 (463)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777754
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.3e-09 Score=99.00 Aligned_cols=290 Identities=12% Similarity=0.060 Sum_probs=234.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 012442 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187 (463)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 187 (463)
+...|....-.-.+-+-..+++.+..++++...+..++....+..-|.++...|+..+-..+=.+|.+.- +-...+|-+
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 4456677777778888889999999999999999999888888888889999999988888888888763 556778988
Q ss_pred HHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHcc
Q 012442 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267 (463)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~ 267 (463)
+.--|... |..++|.++|.+...-.+.-...|....+.|+-.|..|+|+..|...-+- -|.....+--+.--|.+.
T Consensus 318 Vg~YYl~i-~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl---~~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 318 VGCYYLMI-GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL---MPGCHLPSLYLGMEYMRT 393 (611)
T ss_pred HHHHHHHh-cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh---ccCCcchHHHHHHHHHHh
Confidence 88888888 99999999999977644556678999999999999999999988877553 221222233455667888
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcC-CC----CCHHHHHHHHHHHHHcCCHh
Q 012442 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG-AF----PDSLTYNMIFECLIKNKRVH 342 (463)
Q Consensus 268 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~~li~~~~~~~~~~ 342 (463)
+..+.|.+.|.+..... +-|+...+-+.-.....+.+.+|..+|+....... +. --..+++.|...|.+.+.++
T Consensus 394 ~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred ccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 99999999999888763 56778888888888889999999999988541111 11 13346888899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 012442 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406 (463)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 406 (463)
+|+..|++.+... +-+..++.++.-.|...|+++.|.+.|.+..- +.|+..+-..++..+.
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999999999886 78999999999999999999999999999876 6788777777766443
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=5.6e-11 Score=112.86 Aligned_cols=273 Identities=15% Similarity=0.171 Sum_probs=178.1
Q ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCC
Q 012442 135 AVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV 213 (463)
Q Consensus 135 ~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 213 (463)
++-.+...|. |+..||..+|.-|+..|+.+.|- +|.-|.-..+..+...|+.++.+..+. ++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~A-nd~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEA-NDAENPK---------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccc-ccccCCC----------
Confidence 4455566664 67777777777777777777777 777777666666777777777776666 6555544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHh-hCCCCCCHHHH
Q 012442 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK-GENCFPTLKFF 292 (463)
Q Consensus 214 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~ 292 (463)
.|...+|..|..+|...||+.. |+...+ | ...++..+...|-......++..+. ..+..||..+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq-------d---Le~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n- 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ-------D---LESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN- 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH-------H---HHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH-
Confidence 5777777777777777777655 222222 0 1122333444444444444444332 1223344333
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 012442 293 SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN-KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL 371 (463)
Q Consensus 293 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 371 (463)
.+.-....|-++.+.+++..+-......|..+ +++-+... ..+++-........+ .|+..+|..++++-.
T Consensus 145 --~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~al 215 (1088)
T KOG4318|consen 145 --AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRAL 215 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHH
Confidence 33334555667777777655311111112111 23322222 233333333333332 589999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
.+|+++.|..++.+|.+.|++.+..-|..|+-+ .|+..-+..+++.|.+.|+.|+..|+...+..+.+.|..
T Consensus 216 aag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 216 AAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred hcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 999999999999999999999999988888776 888889999999999999999999999999888885544
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=8.2e-09 Score=97.50 Aligned_cols=294 Identities=13% Similarity=0.103 Sum_probs=210.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 012442 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV-VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230 (463)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (463)
-....+...|++++|++.++.-... -+|. .........+.+. |+.++|..++..+.+..+.|..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kL-g~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKL-GRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhh
Confidence 3455678899999999999886543 4554 4455667777888 9999999999999987777777788888777333
Q ss_pred C-----CHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCH-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 012442 231 G-----NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV-DEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304 (463)
Q Consensus 231 g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 304 (463)
. +.+...++|+++... .|. ..+...+.-.+.....+ ..+..++..+...|+++ +|+.+-..|.....
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~---yp~-s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEK---YPR-SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred cccccccHHHHHHHHHHHHHh---Ccc-ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 3 577888999999775 352 22333333333332233 35566777788888653 56666666776666
Q ss_pred HhHHHHHHHHHHHhc-------------CCCCCHH--HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012442 305 STHAVQLWDIMMVFH-------------GAFPDSL--TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369 (463)
Q Consensus 305 ~~~a~~~~~~~~~~~-------------~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 369 (463)
.+-..+++....... .-.|... ++..+.+.|-..|++++|++++++.++.. +-.+..|..-...
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 666666666643221 1134443 44566778889999999999999999985 4457788899999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHH--------HHHHHHHH
Q 012442 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTM--------HKLKKAFY 441 (463)
Q Consensus 370 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--------~~ll~~~~ 441 (463)
|-+.|++.+|.+.++...+.+.. |...-+..+..+.+.|++++|.+++......+..|-...+ .-.-.+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987643 7777777888999999999999999999877653333222 33467888
Q ss_pred Hhcch--hhhHHHHHHHH
Q 012442 442 NESRS--MRDIFDSLERR 457 (463)
Q Consensus 442 ~~g~~--a~~~~~~~~~~ 457 (463)
+.|+. |.+.+..+.+.
T Consensus 317 r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 88888 76666665543
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.6e-08 Score=88.50 Aligned_cols=268 Identities=12% Similarity=0.045 Sum_probs=141.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH-HHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 012442 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL-SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224 (463)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 224 (463)
|......+...+...|+.++|+..|++.... .|+..+-.-+- -.+.+. |+.+....+...+-....-+...|..-+
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~e-g~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQE-GGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhc-cCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 5555666666666666666666666665532 33322211111 112233 5555555555555443334444444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 012442 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304 (463)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 304 (463)
......+++..|+.+-+...+. .|.++..+-.-...+...+++++|.-.|+...... +-+...|.-|+.+|...|.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~---~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDS---EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhcc---CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 4555556666666666655433 45455555555556666666666666666555432 2345566666666666666
Q ss_pred HhHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHHH-cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHH
Q 012442 305 STHAVQLWDIMMVFHGAFPDSLTYNMIF-ECLIK-NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382 (463)
Q Consensus 305 ~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 382 (463)
+.+|.-.-+..++..+- +..+.+.+. ..+.. ..--++|.+++++-.... +--....+.+...|...|..+++..+
T Consensus 384 ~kEA~~~An~~~~~~~~--sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRLFQN--SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHHhhc--chhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHH
Confidence 66666555554443322 222222221 11111 122355666666655442 22233445555566666666666666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 012442 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425 (463)
Q Consensus 383 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 425 (463)
+++... ..||....+.|.+.+...+.+++|++.|......+
T Consensus 461 Le~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 461 LEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 666554 34566666666666666666666666666655443
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=5e-09 Score=84.74 Aligned_cols=195 Identities=14% Similarity=0.088 Sum_probs=166.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 012442 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 194 (463)
+...|.-.|.+.|++..|.+-+++..+.++.+..+|..+...|.+.|+.+.|.+-|++..+.. +-+-.+.|..-.-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 566777889999999999999999999998889999999999999999999999999998764 4556677888888888
Q ss_pred cCCcHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHH
Q 012442 195 QENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272 (463)
Q Consensus 195 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~ 272 (463)
. |.+++|...|++... ....-..+|..+.-+..+.|+.+.|...|++..+. .|+...+.-.+.....+.|++..
T Consensus 116 q-g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 116 Q-GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred C-CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchH
Confidence 8 899999999998766 44555678888888899999999999999998765 67666788888999999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315 (463)
Q Consensus 273 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 315 (463)
|...++.....+. ++....-..|..-...|+.+.+.++=..+
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999988875 78888888888888999988888876664
No 68
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.29 E-value=7.6e-08 Score=89.26 Aligned_cols=308 Identities=11% Similarity=0.020 Sum_probs=183.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH-
Q 012442 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS- 187 (463)
Q Consensus 112 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~- 187 (463)
....|..+...+...|+.+.+...+.........+ ..........+...|++++|.+++++..+.. +.|...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 34456666677777777887777776655544422 2333334456677888888988888887652 333334332
Q ss_pred --HHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHH
Q 012442 188 --LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265 (463)
Q Consensus 188 --ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~ 265 (463)
........ +..+.+.+.++......+........+...+...|++++|.+.+++..+. .|++...+..+...+.
T Consensus 84 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~p~~~~~~~~la~i~~ 159 (355)
T cd05804 84 LGAFGLGDFS-GMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL---NPDDAWAVHAVAHVLE 159 (355)
T ss_pred HHHHHhcccc-cCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHH
Confidence 11111223 55555555555422233444455566777888899999999999988765 6767777888888888
Q ss_pred ccCCHHHHHHHHHHHhhCCC-CCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHH-H--HHHHHHHHcC
Q 012442 266 RGKQVDEALKFLRVMKGENC-FPTL--KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY-N--MIFECLIKNK 339 (463)
Q Consensus 266 ~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~li~~~~~~~ 339 (463)
..|++++|...+++...... .++. ..|..+...+...|++++|..+++.........+..... + .++.-+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 99999999999988776532 1222 345567788889999999999998853222211222211 1 2233333344
Q ss_pred CHhHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC---CC---hhhHHHHH--HHHHc
Q 012442 340 RVHEVEKF--FHEMIKNEW--QPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL---PL---EASANELL--VGLRN 407 (463)
Q Consensus 340 ~~~~a~~~--~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---p~---~~~~~~li--~~~~~ 407 (463)
..+.+.+. +........ ............++...|+.+.|..+++.+...... -. ..+-..++ -++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 33333332 111111110 111222235667788889999999999888753221 00 11122222 35668
Q ss_pred CCCHHHHHHHHHHHHHC
Q 012442 408 LGRLSDVRRFAEEMLNR 424 (463)
Q Consensus 408 ~g~~~~a~~~~~~m~~~ 424 (463)
.|++++|.+.+.+....
T Consensus 320 ~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 EGNYATALELLGPVRDD 336 (355)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 89999999988887654
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5.5e-08 Score=85.28 Aligned_cols=290 Identities=12% Similarity=0.016 Sum_probs=224.1
Q ss_pred hccCCchHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 167 (463)
.+.++...|...|-.+.. ..+.|+.....+.+.+...|+.++|...|+.....++-+..........+.+.|+.+...
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHH
Confidence 445666666666554443 788999999999999999999999999999988887755555555555667889999998
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 012442 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247 (463)
Q Consensus 168 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 247 (463)
.+...+.... +-....|-.-....... .+++.|+.+-++..+-.+.+...|..-...+...|+.++|.-.|+....
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~-K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~-- 362 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDE-KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM-- 362 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhh-hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--
Confidence 8888887542 23444455445555566 8899999999988876677788888888889999999999999998854
Q ss_pred CCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-HHH-HHcCCHhHHHHHHHHHHHhcCCCCCH
Q 012442 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL-DIL-VKLNDSTHAVQLWDIMMVFHGAFPDS 325 (463)
Q Consensus 248 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~ 325 (463)
+.|.+...|.-|+.+|...|.+.+|.-+-.+.... ++.+..+...+. ..+ .....-++|.++++..++ +.|+-
T Consensus 363 -Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y 437 (564)
T KOG1174|consen 363 -LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIY 437 (564)
T ss_pred -cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCcc
Confidence 47778889999999999999999998887776554 344555655552 222 233446889999887544 45553
Q ss_pred -HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 012442 326 -LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390 (463)
Q Consensus 326 -~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 390 (463)
...+.+...+...|+.+.+..++++.... .||....+.|.+.+...+.+.+|.+.|......+
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 35567777888899999999999998875 7899999999999999999999999999888744
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=8.5e-09 Score=96.26 Aligned_cols=239 Identities=15% Similarity=0.108 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHhhc------C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHh-----cCC
Q 012442 183 VAVNSLLSAICRQENQTSRALEFLNRVKK------I-VDPDGD-SFAILLEGWEKEGNVEEANKTFGEMVER-----FEW 249 (463)
Q Consensus 183 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~------~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~ 249 (463)
.+...+...|... |+++.|+.+++...+ | ..|... ..+.+...|...+++++|..+|+++..- ...
T Consensus 200 ~~~~~La~~y~~~-g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQ-GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 4444566777777 788888777776433 1 123322 2334667788888888888888877543 123
Q ss_pred CCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhC-----CCC-CCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHHhcC--
Q 012442 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-----NCF-PTL-KFFSNALDILVKLNDSTHAVQLWDIMMVFHG-- 320 (463)
Q Consensus 250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~-~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-- 320 (463)
.|.-..+++.|...|.+.|++++|...++...+. |.. |.. ..++.+...|+..++++.|..++...++...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 4444567788888899999988888887765431 211 222 2466677778888999999988887644333
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 012442 321 AFPD----SLTYNMIFECLIKNKRVHEVEKFFHEMIKN-----E--WQPTPLNCATAITMLLDADEPEIAIEIWNYILE- 388 (463)
Q Consensus 321 ~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~- 388 (463)
..++ ..+++.|...|...|++++|.++|++.++. | ..-....++.|...|.+.++..+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 347888899999999999999999988753 1 122245677888889999999989888887553
Q ss_pred ---cCCC-CC-hhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012442 389 ---NGIL-PL-EASANELLVGLRNLGRLSDVRRFAEEML 422 (463)
Q Consensus 389 ---~~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 422 (463)
.|.. |+ ..+|..|...|...|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2321 22 3477788899999999999998887765
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=4.3e-09 Score=98.20 Aligned_cols=240 Identities=16% Similarity=0.123 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C-CCcCHHHH-HHHHHHHHccCCcHHHHHHHHHHhhc------C-
Q 012442 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMH-----G-VEQDVVAV-NSLLSAICRQENQTSRALEFLNRVKK------I- 212 (463)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~~~~~-~~ll~~~~~~~~~~~~a~~~~~~~~~------~- 212 (463)
..+...+...|...|+++.|+.+++..++. | ..|...+. +.+...|... +.+++|..+|+++.. |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCC
Confidence 455666888888888888888888776543 2 12333332 3355566666 888888888877643 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----cCCCCch-HhhHHHHHHHHHccCCHHHHHHHHHHHhhC---
Q 012442 213 -VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER----FEWNPEH-VLAYETFLITLIRGKQVDEALKFLRVMKGE--- 283 (463)
Q Consensus 213 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~p~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 283 (463)
.+.-..+++.|...|.+.|++++|...++...+- .+..+.. ...++.++..++..+++++|..++....+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1222356677777888888888777766654321 2333333 345677788888889999988888876432
Q ss_pred CCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHhc----C-CCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 012442 284 NCFPT----LKFFSNALDILVKLNDSTHAVQLWDIMMVFH----G-AFP-DSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353 (463)
Q Consensus 284 ~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (463)
-+.++ ..+++.|...|...|++++|++++++++... + ..+ ....++.|...|.+.+++++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 11122 3578899999999999999999998875433 2 112 245677888888889999988888877543
Q ss_pred ----CC--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 012442 354 ----NE--WQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387 (463)
Q Consensus 354 ----~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 387 (463)
.| -+-...+|..|...|.+.|+++.|.++.+.+.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 22335678899999999999999999988776
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=1.8e-08 Score=81.56 Aligned_cols=197 Identities=15% Similarity=0.082 Sum_probs=118.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012442 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299 (463)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 299 (463)
...|.-.|...|+...|.+-+++..+. .|++..+|..+...|.+.|+.+.|.+.|++..... +-+-.+.|.....+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~---DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH---DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 334555666666666666666666544 56556666666666666666666666666665543 22344555555556
Q ss_pred HHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHH
Q 012442 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379 (463)
Q Consensus 300 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 379 (463)
|..|++++|.+.|+..+......--..+|..+.-+..+.|+.+.|.+.|++.++.. +-...+...+.......|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 66666666666666655544444444556666666666666666666666666654 44455555666666666666666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012442 380 IEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422 (463)
Q Consensus 380 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 422 (463)
..+++.....+. ++..+....|+.-...|+-+.+-++=.++.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 666666655443 555566556666666666666655544443
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=1.7e-08 Score=90.16 Aligned_cols=205 Identities=10% Similarity=-0.023 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012442 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297 (463)
Q Consensus 218 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 297 (463)
..|..+...|...|++++|...|++..+. .|++...|+.+...+...|++++|...|++..+.. +-+..++..+..
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~ 140 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALAL---RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34555555666666666666666666443 55556666666666666666666666666666543 223445555666
Q ss_pred HHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHH
Q 012442 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377 (463)
Q Consensus 298 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 377 (463)
++...|++++|.+.|+...... |+..........+...++.++|...|.+..... .++...+ .+.. ...|+..
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~ 213 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVE--FYLGKIS 213 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHH--HHccCCC
Confidence 6666666666666666644322 222111111112233456666666665544322 2222211 1222 2233333
Q ss_pred HHHHHHHHHHHc---CC--C-CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHH
Q 012442 378 IAIEIWNYILEN---GI--L-PLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 435 (463)
Q Consensus 378 ~a~~~~~~~~~~---~~--~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 435 (463)
.+ +.++.+.+. .+ . .....|..+...+.+.|++++|...|++..+.++ +|..-+..
T Consensus 214 ~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~~~ 275 (296)
T PRK11189 214 EE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEHRY 275 (296)
T ss_pred HH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHHHH
Confidence 33 233333321 00 0 1123566666677777777777777777766542 34444433
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=2.2e-08 Score=89.51 Aligned_cols=195 Identities=14% Similarity=0.029 Sum_probs=127.1
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...|+.+.|...|+.+.+..+.+...|+.+...+...|++++|...|+...+..+.+..+|..+...+...|++++|.+.
T Consensus 75 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 75 DSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45688888888888877777777888888888888888888888888888887777777888888888888888888888
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc--
Q 012442 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF-- 247 (463)
Q Consensus 170 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 247 (463)
|+...+. .|+..........+... ++.++|...|++......++...+ .+. ....|+.+.+ +.+..+.+..
T Consensus 155 ~~~al~~--~P~~~~~~~~~~l~~~~-~~~~~A~~~l~~~~~~~~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~ 227 (296)
T PRK11189 155 LLAFYQD--DPNDPYRALWLYLAESK-LDPKQAKENLKQRYEKLDKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATD 227 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHcc-CCHHHHHHHHHHHHhhCCccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCC
Confidence 8888765 34433222222223334 778888888866544333332222 222 2234555443 3444443211
Q ss_pred --CCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHH
Q 012442 248 --EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF 292 (463)
Q Consensus 248 --~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 292 (463)
.+.|....+|..+...+.+.|++++|...|++..+.+ ++|..-+
T Consensus 228 ~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~ 273 (296)
T PRK11189 228 NTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEH 273 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHH
Confidence 1122234567777888888888888888888877765 3344333
No 75
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=3.7e-09 Score=94.42 Aligned_cols=219 Identities=13% Similarity=0.150 Sum_probs=172.9
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...|++..|..-|+.+....+.+...|-.+...|....+.++.+..|++..+.++.+..+|..-.+.+.-.+++++|..-
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 44688899999999887765666666888888999999999999999999999888888899999999999999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 012442 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249 (463)
Q Consensus 170 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 249 (463)
|++..... +-+...|-.+--+..+. +.++++...|++.+..+|..+.+|+.....+...+++++|.+.|+...+-
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~-~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--- 491 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQ-HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--- 491 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---
Confidence 99988753 34556676777777788 89999999999999989999999999999999999999999999988653
Q ss_pred CCc------hHhh--HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 250 NPE------HVLA--YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315 (463)
Q Consensus 250 ~p~------~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 315 (463)
.|. ++.. .-.++ .+.-.+++..|++++.+..+.+ +-....|..|...-.+.|+.++|+++|++.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 332 1111 11111 1223378888888888887765 234567888888888888888888888874
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=2.9e-09 Score=90.24 Aligned_cols=230 Identities=15% Similarity=0.093 Sum_probs=139.2
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHH
Q 012442 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265 (463)
Q Consensus 186 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~ 265 (463)
+.+-++|.+. |.+.+|.+.++.-.. ..|-+.||..|-++|.+..+...|+.+|.+-.+. .|.|+....-+...+-
T Consensus 227 ~Q~gkCylrL-gm~r~AekqlqssL~-q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRL-GMPRRAEKQLQSSLT-QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHh-cChhhhHHHHHHHhh-cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHHH
Confidence 4555666666 777777766665433 2355666666677777777777777777666544 4545544444555566
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 012442 266 RGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVE 345 (463)
Q Consensus 266 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 345 (463)
..++.++|.++|+...+.. +.+......+...|.-.++++-|.++|++ +...|+. +...|+.+.-+|.-.+++|-++
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRR-iLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRR-ILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHH-HHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 6666777777777666653 33445555555666666677777777776 3444442 4455666666666666677777
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012442 346 KFFHEMIKNEWQPT--PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 346 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
-.|.+....--.|+ ...|-.+.......|++.-|.+.|+-....+. -+...++.|.-.-.+.|++++|..+++...+
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66666655432233 23455666666666777777777766665432 2445666666666667777777777666654
Q ss_pred C
Q 012442 424 R 424 (463)
Q Consensus 424 ~ 424 (463)
.
T Consensus 458 ~ 458 (478)
T KOG1129|consen 458 V 458 (478)
T ss_pred h
Confidence 3
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.17 E-value=4.5e-07 Score=84.21 Aligned_cols=330 Identities=14% Similarity=0.071 Sum_probs=231.6
Q ss_pred HHHhccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHH
Q 012442 87 VLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166 (463)
Q Consensus 87 ~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 166 (463)
++...-.++++|++.|..+...-+.|...|.-+--.-++.|+++.....-....+..+.....|..+..++.-.|+...|
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445678999999999999888899999999988888999999999998888888777788899999999999999999
Q ss_pred HHHHHHHHhCC-CCcCHHHHHHHHHH------HHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012442 167 VMSFDVMSMHG-VEQDVVAVNSLLSA------ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT 239 (463)
Q Consensus 167 ~~~~~~m~~~g-~~~~~~~~~~ll~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 239 (463)
..++++..+.- -.|+...|...... ..+. |..+.|.+.+......+......-.+-...+.+.+++++|..+
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~-g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEA-GSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHc-ccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 99999998654 24666666544333 3455 7788888887776554444444455667888999999999999
Q ss_pred HHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHH-HHHHHH----------------------------------hhCC
Q 012442 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL-KFLRVM----------------------------------KGEN 284 (463)
Q Consensus 240 ~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~-~~~~~m----------------------------------~~~~ 284 (463)
|..+..+ .|++...|..+..++.+..+.-++. .+|... .+.|
T Consensus 242 y~~Ll~r---nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 242 YRRLLER---NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHhh---CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9999887 8877766666666665332222333 444433 2233
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH---HHhcC----------CCCCHHHH--HHHHHHHHHcCCHhHHHHHHH
Q 012442 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIM---MVFHG----------AFPDSLTY--NMIFECLIKNKRVHEVEKFFH 349 (463)
Q Consensus 285 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~----------~~~~~~~~--~~li~~~~~~~~~~~a~~~~~ 349 (463)
+++ ++..+...|-.....+-..++...+ +...| -+|.+..| -.++..|-..|+++.|..+++
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 222 2233333332222111111111111 11111 14555444 456778889999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 012442 350 EMIKNEWQPT-PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426 (463)
Q Consensus 350 ~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 426 (463)
..+++ .|+ ...|..=...+...|++++|...+++..+.+ .+|...-..-..-..+.++.++|.++.......|.
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 99987 444 3455566688999999999999999999876 45655444556667789999999999999888775
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.16 E-value=6.5e-07 Score=83.04 Aligned_cols=306 Identities=9% Similarity=-0.028 Sum_probs=190.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCcCHHHHHHH-HHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHH
Q 012442 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQDVVAVNSL-LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223 (463)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 223 (463)
....|..+...+...|+.+.+.+.+....+.. ...+......+ ...+... |++++|.+++++..+..+.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIA-GDLPKALALLEQLLDDYPRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCcHHHHHH-
Confidence 35567777777878888888777777665432 12232222222 2234445 99999999999988766667666653
Q ss_pred HHHHH----hcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012442 224 LEGWE----KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299 (463)
Q Consensus 224 ~~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 299 (463)
...+. ..+..+.+.+.+... ....|........+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 22333 345555555555542 24456555566677788899999999999999999875 44567788889999
Q ss_pred HHcCCHhHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHhCC
Q 012442 300 VKLNDSTHAVQLWDIMMVFHGAFPDS--LTYNMIFECLIKNKRVHEVEKFFHEMIKNEW-QPTPLNC-A--TAITMLLDA 373 (463)
Q Consensus 300 ~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~ 373 (463)
...|++++|...+++.+......++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 99999999999999865543323333 3456788889999999999999999865431 1222211 1 333344444
Q ss_pred CCHHHHHHH---HHHHHHcCCCCChhhHH--HHHHHHHcCCCHHHHHHHHHHHHHCCCc------cCHHHHHHHHH--HH
Q 012442 374 DEPEIAIEI---WNYILENGILPLEASAN--ELLVGLRNLGRLSDVRRFAEEMLNRRIL------IYEVTMHKLKK--AF 440 (463)
Q Consensus 374 g~~~~a~~~---~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~------~~~~~~~~ll~--~~ 440 (463)
|....+.+. ....... .......+. ....++...|+.++|..+++.+...... ....+-..++. ++
T Consensus 239 g~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWH-FPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred CCCChHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 543333332 1211111 111112222 4666788999999999999998763221 11112222333 34
Q ss_pred HHhcch--hhhHHHHHHHHH
Q 012442 441 YNESRS--MRDIFDSLERRC 458 (463)
Q Consensus 441 ~~~g~~--a~~~~~~~~~~~ 458 (463)
...|+. |.+.+...+...
T Consensus 318 ~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 318 FAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHH
Confidence 577777 666666665544
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.11 E-value=1.4e-06 Score=82.67 Aligned_cols=332 Identities=14% Similarity=0.080 Sum_probs=185.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc-CHHHHH
Q 012442 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ-DVVAVN 186 (463)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~ 186 (463)
.+..|...|..+.-++.+.|+++.+.+.|++.........+.|+.+...|...|.-..|..+++.-....-.| |...+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4456777888888888888888888888887766655667778888888888888778888777765432123 333333
Q ss_pred HHHHHHHccCCcHHHHHHHHHHhhc--C---CCCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHhcCCC
Q 012442 187 SLLSAICRQENQTSRALEFLNRVKK--I---VDPDGDSFAILLEGWEK-----------EGNVEEANKTFGEMVERFEWN 250 (463)
Q Consensus 187 ~ll~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~~~~l~~~~~~-----------~g~~~~a~~~~~~~~~~~~~~ 250 (463)
..-..|.+.-+..++++.+-.++.. + -......|..+.-+|.. .....++.+.+++..+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~---d 474 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF---D 474 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc---C
Confidence 3334444443555555555544433 1 11122233333333321 11233455555555443 3
Q ss_pred CchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCC---------
Q 012442 251 PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA--------- 321 (463)
Q Consensus 251 p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--------- 321 (463)
|.|..+..-+.--|+-.++.+.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+..+...|.
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 33332333333344455556666666666655544445555555555555555555555555544222111
Q ss_pred --------------------------------------------------------------------------------
Q 012442 322 -------------------------------------------------------------------------------- 321 (463)
Q Consensus 322 -------------------------------------------------------------------------------- 321 (463)
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence
Q ss_pred ----C--CC------HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 012442 322 ----F--PD------SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389 (463)
Q Consensus 322 ----~--~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 389 (463)
. |+ ...|......+.+.+..++|...+.+..... +.....|......+...|..++|.+.|......
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 0 11 1123333444555555666665555555442 444455555556666667777777777766653
Q ss_pred CCCCC-hhhHHHHHHHHHcCCCHHHHHH--HHHHHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 390 GILPL-EASANELLVGLRNLGRLSDVRR--FAEEMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 390 ~~~p~-~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
.|+ +....++..++.+.|+..-|.. ++.++.+.+. .+...|-.+-..+.+.|+.
T Consensus 714 --dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 714 --DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred --CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccch
Confidence 333 3356667777777777666666 7777776653 4666777777777777776
No 80
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.10 E-value=1.1e-06 Score=79.91 Aligned_cols=375 Identities=12% Similarity=0.090 Sum_probs=229.1
Q ss_pred CCCHHHHHHHHH-hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 012442 78 IPTPDLVHEVLQ-LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156 (463)
Q Consensus 78 ~~~~~~~~~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 156 (463)
+-|...+..+++ ......+++++.++.+...++..+..|..-|..-.+.++++....+|.+.... +.+...|...+..
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-vLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-VLNLDLWKLYLSY 95 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HhhHhHHHHHHHH
Confidence 347788889988 55567899999999998888999999999999999999999999999998764 4467777777764
Q ss_pred HHhc-CChHH----HHHHHHHHH-hCCCCc-CHHHHHHHHHHH---------HccCCcHHHHHHHHHHhhcCCC------
Q 012442 157 YCGA-GKYDE----AVMSFDVMS-MHGVEQ-DVVAVNSLLSAI---------CRQENQTSRALEFLNRVKKIVD------ 214 (463)
Q Consensus 157 ~~~~-g~~~~----A~~~~~~m~-~~g~~~-~~~~~~~ll~~~---------~~~~~~~~~a~~~~~~~~~~~~------ 214 (463)
-.+. |+... ..+.|+-.. +.|..+ +-..|+..+.-+ ... .+.+...++|+++....-
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~-QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEEN-QRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHH-HHHHHHHHHHHHHhcCccccHHHH
Confidence 4432 33333 334444433 445433 234455555432 334 466777778877654111
Q ss_pred -CCHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHHh-cCCCCchH--------------hhHHHHHHHH-------
Q 012442 215 -PDGDSFAILLEGW-------EKEGNVEEANKTFGEMVER-FEWNPEHV--------------LAYETFLITL------- 264 (463)
Q Consensus 215 -~~~~~~~~l~~~~-------~~~g~~~~a~~~~~~~~~~-~~~~p~~~--------------~~~~~li~~~------- 264 (463)
.|-..|..=|+.. -+...+..|.++++++... .|+...+. ..|-.+|.--
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 1111221111111 1233455566666655431 02211000 0122222111
Q ss_pred ------------------------------------------HccCC-------HHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012442 265 ------------------------------------------IRGKQ-------VDEALKFLRVMKGENCFPTLKFFSNA 295 (463)
Q Consensus 265 ------------------------------------------~~~~~-------~~~a~~~~~~m~~~~~~~~~~~~~~l 295 (463)
...|+ -+++..+++...+.-..-+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 22333333333222111122222222
Q ss_pred HHHHHHc---CCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHh
Q 012442 296 LDILVKL---NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP-TPLNCATAITMLL 371 (463)
Q Consensus 296 l~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~ 371 (463)
...--.. +..+.....++++.....+.|+. +|..+|..-.+..-++.|..+|.++.+.+..+ +...+++++.-||
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 2111111 12455555666655545555553 57788888788888999999999999988666 7778888888877
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccC--HHHHHHHHHHHHHhcchhhh
Q 012442 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY--EVTMHKLKKAFYNESRSMRD 449 (463)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~a~~ 449 (463)
. ++.+-|.++|+--.++ +.-++..-...++-+...|+-..|..+|++....++.++ ...|..+|..=..-|+. .
T Consensus 414 s-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL--~ 489 (656)
T KOG1914|consen 414 S-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL--N 489 (656)
T ss_pred c-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH--H
Confidence 4 7889999999976543 233444556788888899999999999999998866655 46899999999999999 6
Q ss_pred HHHHHHHHHh
Q 012442 450 IFDSLERRCK 459 (463)
Q Consensus 450 ~~~~~~~~~~ 459 (463)
.+..+.+++.
T Consensus 490 si~~lekR~~ 499 (656)
T KOG1914|consen 490 SILKLEKRRF 499 (656)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 81
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.09 E-value=2.5e-06 Score=79.32 Aligned_cols=202 Identities=12% Similarity=0.127 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC---------------C------cHHHHHHHH
Q 012442 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE---------------N------QTSRALEFL 206 (463)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~---------------~------~~~~a~~~~ 206 (463)
..|++|.+.|.+.|+++.|.++|++.... ..+...|..+.++|+.-. + +++..+.-|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 35677888888888888888888887654 344555555555554320 0 122222223
Q ss_pred HHhhc------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch-----HhhHHHHHHHHHccCC
Q 012442 207 NRVKK------------IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH-----VLAYETFLITLIRGKQ 269 (463)
Q Consensus 207 ~~~~~------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~~li~~~~~~~~ 269 (463)
+.+.+ ..+.++..|..-+.. ..|+..+-...|.+..+ .++|.- ...|..+...|-..|+
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCc
Confidence 33221 112233333333322 24566666677777665 333321 2357777777888888
Q ss_pred HHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHhc---------CCCC-------CHHHHHH
Q 012442 270 VDEALKFLRVMKGENCFPT---LKFFSNALDILVKLNDSTHAVQLWDIMMVFH---------GAFP-------DSLTYNM 330 (463)
Q Consensus 270 ~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------~~~~-------~~~~~~~ 330 (463)
++.|..+|++..+...+-- ..+|..-..+-.+..+++.|.++++....-. +..| +...|..
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 8888888888766543322 2345555555566677777777776641100 0011 2223444
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCC
Q 012442 331 IFECLIKNKRVHEVEKFFHEMIKNE 355 (463)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~~~~~~ 355 (463)
.++.--..|-++....+|+++++..
T Consensus 483 y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHh
Confidence 4554445667777777777777654
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=8.8e-07 Score=76.41 Aligned_cols=349 Identities=10% Similarity=0.019 Sum_probs=195.0
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC------------CCHH---------
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV------------LSLP--------- 148 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------------~~~~--------- 148 (463)
...|++++|+..+..+.....++...+-.|..++--.|.+.+|..+-....+... .+..
T Consensus 68 fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~L 147 (557)
T KOG3785|consen 68 FHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSL 147 (557)
T ss_pred HhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4469999999999988776677777777777777777888888776554322110 0111
Q ss_pred -----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHccCCcHHHHHHHHHHhhcCCCCCHHHHHH
Q 012442 149 -----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA-ICRQENQTSRALEFLNRVKKIVDPDGDSFAI 222 (463)
Q Consensus 149 -----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 222 (463)
.--+|.......-.+++|++++...+.. .|+-...|.-+.. |.+. .-++-+.+++..-.+.++.+....|.
T Consensus 148 qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKl-DYydvsqevl~vYL~q~pdStiA~NL 224 (557)
T KOG3785|consen 148 QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKL-DYYDVSQEVLKVYLRQFPDSTIAKNL 224 (557)
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhc-chhhhHHHHHHHHHHhCCCcHHHHHH
Confidence 1112233333334567777777777654 3555555554443 4455 66777777777666656666666665
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH--------------h------------------cCCCCchHhhHHHHHHHHHccCCH
Q 012442 223 LLEGWEKEGNVEEANKTFGEMVE--------------R------------------FEWNPEHVLAYETFLITLIRGKQV 270 (463)
Q Consensus 223 l~~~~~~~g~~~~a~~~~~~~~~--------------~------------------~~~~p~~~~~~~~li~~~~~~~~~ 270 (463)
.+....+.=+-..|++-.+++.+ . ..+.| .+--.|+-.|.+.+++
T Consensus 225 kacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP---EARlNL~iYyL~q~dV 301 (557)
T KOG3785|consen 225 KACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP---EARLNLIIYYLNQNDV 301 (557)
T ss_pred HHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhCh---HhhhhheeeecccccH
Confidence 55444332111111111111111 0 01122 1334455567777888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHH-----HHcCCHhHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCHhHH
Q 012442 271 DEALKFLRVMKGENCFPTLKFFSNALDIL-----VKLNDSTHAVQLWDIMMVFHGAFPDSL-TYNMIFECLIKNKRVHEV 344 (463)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a 344 (463)
++|..+.+++.-. .|-......++.+- .....+.-|.+.|+. ....+..-|+. ---++...+.-..+++++
T Consensus 302 qeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffql-VG~Sa~ecDTIpGRQsmAs~fFL~~qFddV 378 (557)
T KOG3785|consen 302 QEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQL-VGESALECDTIPGRQSMASYFFLSFQFDDV 378 (557)
T ss_pred HHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHHHHHHH
Confidence 8888877765332 23222222222221 111235556666665 34444433322 123444455555677777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHcCCCHHHHHHHHHHHHH
Q 012442 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE-LLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
+-++..+...=...|... -.+.++++..|++.+|+++|-.+....++ |..+|.+ |.++|.+.|+.+-|.+++-++
T Consensus 379 l~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~-- 454 (557)
T KOG3785|consen 379 LTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT-- 454 (557)
T ss_pred HHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc--
Confidence 777777666432333333 35778888889999999988777655444 4556655 456888889888887665444
Q ss_pred CCCccCHH-HHHHHHHHHHHhcch--hhhHHH
Q 012442 424 RRILIYEV-TMHKLKKAFYNESRS--MRDIFD 452 (463)
Q Consensus 424 ~~~~~~~~-~~~~ll~~~~~~g~~--a~~~~~ 452 (463)
+-..+.. ....+.+-|.+.++. |-+.++
T Consensus 455 -~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd 485 (557)
T KOG3785|consen 455 -NTPSERFSLLQLIANDCYKANEFYYAAKAFD 485 (557)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333 334445678888877 444443
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.07 E-value=2.9e-06 Score=72.99 Aligned_cols=292 Identities=13% Similarity=0.069 Sum_probs=212.4
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...+++..|+.-|..+.++.+.+-.++-.-...|...|+-..|+.=+....+..+.-..+-..-...+.+.|.++.|..-
T Consensus 49 la~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~D 128 (504)
T KOG0624|consen 49 LARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEAD 128 (504)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHH
Confidence 34688889999999888777777777777778888899999998888887776542222222334567889999999999
Q ss_pred HHHHHhCCCCcCHH--------------HH--HHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 012442 170 FDVMSMHGVEQDVV--------------AV--NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233 (463)
Q Consensus 170 ~~~m~~~g~~~~~~--------------~~--~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 233 (463)
|+..++.. |+.. .| ...+..+... |+...|+.....+.+-.+-|...|..-..+|...|+.
T Consensus 129 F~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~-GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~ 205 (504)
T KOG0624|consen 129 FDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGS-GDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEP 205 (504)
T ss_pred HHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcH
Confidence 99998763 3211 11 2233444556 8999999999999887788889999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH----HHHH---------HHHHH
Q 012442 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF----FSNA---------LDILV 300 (463)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~l---------l~~~~ 300 (463)
..|+.=++...+ +..++..++.-+...+...|+.+.++...++.++.+ ||... |..+ +....
T Consensus 206 k~AI~Dlk~ask---Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 206 KKAIHDLKQASK---LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred HHHHHHHHHHHh---ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887777644 355567778888888889999999999999988865 66532 2111 22334
Q ss_pred HcCCHhHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHH
Q 012442 301 KLNDSTHAVQLWDIMMVFHGAFP--DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378 (463)
Q Consensus 301 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 378 (463)
..+++-++..-.+.+|+...-.+ ....+..+-.++...|++.+|++...+.++.. +.|..++.--..+|.-...++.
T Consensus 281 e~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred hhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHH
Confidence 56777777777777666443211 11234445556667788899999888888764 5568888888888888888889
Q ss_pred HHHHHHHHHHcC
Q 012442 379 AIEIWNYILENG 390 (463)
Q Consensus 379 a~~~~~~~~~~~ 390 (463)
|+.-|+...+.+
T Consensus 360 AI~dye~A~e~n 371 (504)
T KOG0624|consen 360 AIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHhcC
Confidence 988888888754
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=6.6e-06 Score=75.90 Aligned_cols=309 Identities=10% Similarity=0.058 Sum_probs=166.2
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHccCCcHHHH
Q 012442 124 GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ-DVVAVNSLLSAICRQENQTSRA 202 (463)
Q Consensus 124 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~~a 202 (463)
-+.+..++|+..++-.. ..+..+...-.+.+.+.|++++|+++|+.+.+.+.+- +...-..++.+-... .+
T Consensus 90 Yrlnk~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-----~~ 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-----QV 161 (652)
T ss_pred HHcccHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-----hH
Confidence 35567777777766222 2244455666677777888888888888887654221 111111122211111 11
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hcCCCCch---H-----hhHHHHHHHHHccCCH
Q 012442 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE----RFEWNPEH---V-----LAYETFLITLIRGKQV 270 (463)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~---~-----~~~~~li~~~~~~~~~ 270 (463)
. +.+........+-..+......+...|++.+|++++....+ .+.-.-.+ . ..--.|...+...|+.
T Consensus 162 ~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 1 22222221112233334445567789999999999998832 11111101 1 1122445567778999
Q ss_pred HHHHHHHHHHhhCCCCCCHH----HHHHHHHH-----------------------------------------------H
Q 012442 271 DEALKFLRVMKGENCFPTLK----FFSNALDI-----------------------------------------------L 299 (463)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~~~----~~~~ll~~-----------------------------------------------~ 299 (463)
++|..++......+. +|.. ..|.|+.. |
T Consensus 241 ~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887753 2221 11111110 0
Q ss_pred H--------------------------------HcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 012442 300 V--------------------------------KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347 (463)
Q Consensus 300 ~--------------------------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 347 (463)
. +...+..+.+++... ............-.+++.....|+++.|.++
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~-~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQF-ADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 0 000112222222221 1111111133444556666677888888888
Q ss_pred HH--------HHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCCCChh----hHHHHHHHHHcCCCHHH
Q 012442 348 FH--------EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN--GILPLEA----SANELLVGLRNLGRLSD 413 (463)
Q Consensus 348 ~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~----~~~~li~~~~~~g~~~~ 413 (463)
+. .+.+.+.. +.+...++..+.+.++.+.|..++.+.... .-.+... ++.-+...-.+.|+.++
T Consensus 399 l~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 77 44443333 344556666677777777777777666541 1111112 33333444456799999
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 414 VRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 414 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
|..+++++.+.+ ++|..+...++.+|++-.-.
T Consensus 477 a~s~leel~k~n-~~d~~~l~~lV~a~~~~d~e 508 (652)
T KOG2376|consen 477 ASSLLEELVKFN-PNDTDLLVQLVTAYARLDPE 508 (652)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHhcCHH
Confidence 999999998754 47888888899998887544
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=2.4e-07 Score=77.93 Aligned_cols=284 Identities=14% Similarity=0.042 Sum_probs=198.2
Q ss_pred ccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 012442 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170 (463)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (463)
...+++.|++++....+..+.+....+.|..+|-+..++..|-..|+++....+.-..-----.+.+.+.+.+.+|+++.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 34677889998887777777788899999999999999999999999987765432221122356677889999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHH--HHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 012442 171 DVMSMHGVEQDVVAVNSLLSA--ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248 (463)
Q Consensus 171 ~~m~~~g~~~~~~~~~~ll~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 248 (463)
..|... ++...-..-+.+ .... +++..+..+.++... ..+..+.+.......+.|+++.|.+-|+...+..|
T Consensus 102 ~~~~D~---~~L~~~~lqLqaAIkYse-~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 102 FLLLDN---PALHSRVLQLQAAIKYSE-GDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHhcCC---HHHHHHHHHHHHHHhccc-ccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 888752 332222222222 2234 888888888888763 13455556666667899999999999999988778
Q ss_pred CCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-------------CH---------------HHHHHHHHHHH
Q 012442 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-------------TL---------------KFFSNALDILV 300 (463)
Q Consensus 249 ~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-------------~~---------------~~~~~ll~~~~ 300 (463)
..| ..+||.-+. ..+.|+++.|++...++.++|++. |. ..+|.-...+.
T Consensus 176 yqp--llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIey 252 (459)
T KOG4340|consen 176 YQP--LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEY 252 (459)
T ss_pred CCc--hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhh
Confidence 887 346776554 456789999999999998887542 21 12233334456
Q ss_pred HcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHH
Q 012442 301 KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380 (463)
Q Consensus 301 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 380 (463)
+.|+++.|.+.+..|-.......|++|...+.-.= ..+++.+..+-+.-+.+.. +....||..++-.||+..-++-|-
T Consensus 253 q~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 253 QLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred hcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHH
Confidence 88999999998888533333445666665543221 2345666666666666664 556788999999999988888888
Q ss_pred HHHHH
Q 012442 381 EIWNY 385 (463)
Q Consensus 381 ~~~~~ 385 (463)
.++.+
T Consensus 331 DvLAE 335 (459)
T KOG4340|consen 331 DVLAE 335 (459)
T ss_pred HHHhh
Confidence 77654
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=9.8e-08 Score=87.41 Aligned_cols=218 Identities=17% Similarity=0.112 Sum_probs=171.4
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...|+...|.-+|+.+....|-+...|..|.......++-..|+..+.+..+.++.|..+.-.|.-.|...|.-..|.++
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 34577899999999888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCc--------CHHHHHHHHHHHHccCCcHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012442 170 FDVMSMHGVEQ--------DVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKT 239 (463)
Q Consensus 170 ~~~m~~~g~~~--------~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 239 (463)
|+..+....+- +...-+. ..+... ..+....++|-++.. +...|..+...|.-.|--.|++++|...
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~-~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDS-SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCH-HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99886543110 0000000 122222 344556666666655 4458888888888889999999999999
Q ss_pred HHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 240 FGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-KFFSNALDILVKLNDSTHAVQLWDIM 315 (463)
Q Consensus 240 ~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 315 (463)
|+..... .|.|...||.|..+++...+.++|+..|.+.++. +|+- .....|.-+|...|.+++|.+.|-.+
T Consensus 453 f~~AL~v---~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 453 FEAALQV---KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHhc---CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999654 8999999999999999999999999999999885 4653 34455566788999999998887665
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.9e-06 Score=79.41 Aligned_cols=359 Identities=13% Similarity=0.029 Sum_probs=197.3
Q ss_pred HHHHHHHHH-hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 012442 81 PDLVHEVLQ-LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159 (463)
Q Consensus 81 ~~~~~~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~ 159 (463)
+..+..+-. ...+++++|.+.-+.+....+-|...+.+-+-++.+.+++++|+.+.+.-......+.. +..-.-+..+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHHHHHH
Confidence 445555544 45678888888888888877788888888888888889999988655442221111211 1233445567
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCCHHHHH
Q 012442 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG--DSFAILLEGWEKEGNVEEAN 237 (463)
Q Consensus 160 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~ 237 (463)
.+..++|+..++... +.|..+...-...+.+. |++++|..+|+.+.+...++. ..-..++.+-. --.+
T Consensus 92 lnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl-~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~- 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLD----RLDDKLLELRAQVLYRL-ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQV- 161 (652)
T ss_pred cccHHHHHHHHhccc----ccchHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhH-
Confidence 888899988887322 22333555556677788 899999999998865333332 22222222111 0011
Q ss_pred HHHHHHHHhcCCCCchHhhHHHH---HHHHHccCCHHHHHHHHHHHhhCC----CCCCHH----------HHHHHHHHHH
Q 012442 238 KTFGEMVERFEWNPEHVLAYETF---LITLIRGKQVDEALKFLRVMKGEN----CFPTLK----------FFSNALDILV 300 (463)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~----------~~~~ll~~~~ 300 (463)
++ +.. ....|.+ +|..+ ...+...|++.+|+++++...+.+ ..-|.. +-..+...+.
T Consensus 162 ~~---~q~-v~~v~e~--syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 162 QL---LQS-VPEVPED--SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HH---HHh-ccCCCcc--hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 11 221 2334432 34333 445667799999999999885443 122221 1223455677
Q ss_pred HcCCHhHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHHcCCHh-HHHHHHHH------------HHHC---------
Q 012442 301 KLNDSTHAVQLWDIMMVFHGAFPDSL----TYNMIFECLIKNKRVH-EVEKFFHE------------MIKN--------- 354 (463)
Q Consensus 301 ~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~-~a~~~~~~------------~~~~--------- 354 (463)
..|+-++|..++..++... .+|.. .-|.|+..-....-++ .++..++. +...
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~--~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRN--PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HhcchHHHHHHHHHHHHhc--CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998855433 23432 2233332211111011 00111110 0000
Q ss_pred ------------------CCCCC--HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHH
Q 012442 355 ------------------EWQPT--PLNCATAITMLLD--ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412 (463)
Q Consensus 355 ------------------~~~~~--~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 412 (463)
..++. ...+.+++..+.+ .....++.+++....+....-...+--.++......|+++
T Consensus 314 ~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 314 ALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 01111 1223333333222 1235556666666555332222345556677888899999
Q ss_pred HHHHHHH--------HHHHCCCccCHHHHHHHHHHHHHhcch--hhhHHHHHHHHHhh
Q 012442 413 DVRRFAE--------EMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLERRCKT 460 (463)
Q Consensus 413 ~a~~~~~--------~m~~~~~~~~~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~~~ 460 (463)
.|.+++. .+.+.+..|-.+ ..+..-+.+.+.. |.+++.+.++.|..
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 9999999 666666656544 3444445555544 77777777776654
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=1.6e-07 Score=86.05 Aligned_cols=246 Identities=15% Similarity=0.095 Sum_probs=190.4
Q ss_pred HHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHH
Q 012442 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271 (463)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~ 271 (463)
+.+. |+..+|.-.|+...+..|-+...|..|.......++-..|+..+.+..+ ++|++..+.-.|.-.|...|.-.
T Consensus 295 lm~n-G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~---LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKN-GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE---LDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhc-CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh---cCCccHHHHHHHHHHHhhhhhHH
Confidence 4566 8899999999998887888999999999999999999999999998864 59999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCC--------CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhH
Q 012442 272 EALKFLRVMKGENCFP--------TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343 (463)
Q Consensus 272 ~a~~~~~~m~~~~~~~--------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 343 (463)
.|+..++.-.....+- +...-.. ..+.....+.+..++|-++....+..+|......|.-.|.-.|.+++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999999876543110 0000000 11222333456667777767777766777778888888889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012442 344 VEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA-SANELLVGLRNLGRLSDVRRFAEEML 422 (463)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~ 422 (463)
|.+.|+.++... +-|..+||-|...++...+.++|...|+++++ +.|+.+ +..-|.-.|...|.+++|.+.|-+.+
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999986 77889999999999999999999999999998 456543 44557778999999999999887654
Q ss_pred H---C------CCccCHHHHHHHHHHHHHhcch
Q 012442 423 N---R------RILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 423 ~---~------~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
. . +..++...|..|=.++.-.++.
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 2 2 1123345777776666666666
No 89
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=4.5e-06 Score=72.16 Aligned_cols=355 Identities=11% Similarity=0.064 Sum_probs=182.7
Q ss_pred cCCchHHHHHHHHhcCCCCCCHHHHHH-HHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 012442 92 YDSPSSAVDFFRWAGRGQRLSPYAWNL-MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170 (463)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (463)
..++.-|+.+++.......-.....+. +..++-+.|++++|+..|..+....-++...+-.|..++.-.|.+.+|..+-
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 355666666666544311111112222 3445678899999999999988877677777777777777788888887765
Q ss_pred HHHHhCCC-------------------------CcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHH-HH
Q 012442 171 DVMSMHGV-------------------------EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAI-LL 224 (463)
Q Consensus 171 ~~m~~~g~-------------------------~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-l~ 224 (463)
.+..+..+ ......--+|.+..... -.+++|++++.++.... |+-...|. +.
T Consensus 115 ~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR-~HYQeAIdvYkrvL~dn-~ey~alNVy~A 192 (557)
T KOG3785|consen 115 EKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMR-MHYQEAIDVYKRVLQDN-PEYIALNVYMA 192 (557)
T ss_pred hhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHH-HHHHHHHHHHHHHHhcC-hhhhhhHHHHH
Confidence 54422110 00001111122222222 34555666665554421 22222332 33
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCC------------------
Q 012442 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF------------------ 286 (463)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------------------ 286 (463)
-+|.+..-++-+.++++-..+. .|++..+.|.......+.=.-..|++-.+++...+-.
T Consensus 193 LCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn 269 (557)
T KOG3785|consen 193 LCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN 269 (557)
T ss_pred HHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC
Confidence 4455666666666666666554 4545555555544444442223333333333332210
Q ss_pred --------CC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HH----HcCCHhHHHHHH
Q 012442 287 --------PT-----LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC-LI----KNKRVHEVEKFF 348 (463)
Q Consensus 287 --------~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~----~~~~~~~a~~~~ 348 (463)
|. +..-..|+-.|.+.+++.+|..+.+.+ ....|-....-.++.+ +. ......-|.+.|
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl---~PttP~EyilKgvv~aalGQe~gSreHlKiAqqff 346 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL---DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFF 346 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc---CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Confidence 00 011122333456667777777666652 1122222222222111 11 112334455555
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCc
Q 012442 349 HEMIKNEWQPTPL-NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL 427 (463)
Q Consensus 349 ~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 427 (463)
+-.-+.+..-|.. --.++..++.-..++++.+.+++.+...-...|...| .+..+++..|.+.+|.++|-++....++
T Consensus 347 qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik 425 (557)
T KOG3785|consen 347 QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK 425 (557)
T ss_pred HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh
Confidence 4443333222211 1224444555555677777777776653222222222 3778899999999999999887765554
Q ss_pred cCHHHHHH-HHHHHHHhcchhhhHHHHHHHHH
Q 012442 428 IYEVTMHK-LKKAFYNESRSMRDIFDSLERRC 458 (463)
Q Consensus 428 ~~~~~~~~-ll~~~~~~g~~a~~~~~~~~~~~ 458 (463)
|..+|.+ |.++|.+.++. +.+-++.-++
T Consensus 426 -n~~~Y~s~LArCyi~nkkP--~lAW~~~lk~ 454 (557)
T KOG3785|consen 426 -NKILYKSMLARCYIRNKKP--QLAWDMMLKT 454 (557)
T ss_pred -hhHHHHHHHHHHHHhcCCc--hHHHHHHHhc
Confidence 4455555 56777888888 5555554443
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=4.7e-08 Score=86.13 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=36.4
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCH-HHHHHHH
Q 012442 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL-SDVRRFA 418 (463)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~ 418 (463)
.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+. -+..+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 455555555554433 244555555555555555555555555555443321 1333333344444444444 3444455
Q ss_pred HHHHH
Q 012442 419 EEMLN 423 (463)
Q Consensus 419 ~~m~~ 423 (463)
.+++.
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 55443
No 91
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.96 E-value=9.3e-07 Score=88.88 Aligned_cols=242 Identities=11% Similarity=0.083 Sum_probs=189.5
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch--HhhHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 012442 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH--VLAYETFLITLIRGKQVDEALKFLRVMKGE 283 (463)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 283 (463)
|+++...-|.....|-..|....+.++.++|.+++++.....++.-.+ ...|.++++.-...|.-+...++|++..+.
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY 1526 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh
Confidence 444444456667889999999999999999999999988643322211 246888888888888888999999998876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC---H
Q 012442 284 NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT---P 360 (463)
Q Consensus 284 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 360 (463)
. -....|..|...|.+.+..++|.++++.|.++.+ -....|...++.+.++++-+.|..++.+.++. -|. .
T Consensus 1527 c--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv 1600 (1710)
T KOG1070|consen 1527 C--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHV 1600 (1710)
T ss_pred c--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhH
Confidence 4 2256788899999999999999999999877776 45678999999999999999999999998875 233 3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCH--HHHHHHHH
Q 012442 361 LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE--VTMHKLKK 438 (463)
Q Consensus 361 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~ 438 (463)
....-.+..-.+.|+.+++..+|+...... +--...|+.+|+.-.++|+.+.+..+|++....++.|-. ..|...+.
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 344555666678899999999999988653 335679999999999999999999999999999887653 46888888
Q ss_pred HHHHhcchhhhHHHHHHH
Q 012442 439 AFYNESRSMRDIFDSLER 456 (463)
Q Consensus 439 ~~~~~g~~a~~~~~~~~~ 456 (463)
.=.+.|+. +-++.+-.
T Consensus 1680 yEk~~Gde--~~vE~VKa 1695 (1710)
T KOG1070|consen 1680 YEKSHGDE--KNVEYVKA 1695 (1710)
T ss_pred HHHhcCch--hhHHHHHH
Confidence 87888887 44444433
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.92 E-value=7.8e-08 Score=84.75 Aligned_cols=243 Identities=18% Similarity=0.175 Sum_probs=125.6
Q ss_pred CCChHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHH
Q 012442 126 NGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204 (463)
Q Consensus 126 ~g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~ 204 (463)
.|++..++.-.+ ...... ........+.+++...|+.+.++ .++.... .|.......+...+... ++-+.++.
T Consensus 14 ~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~-~~~e~~l~ 87 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSP-SDKESALE 87 (290)
T ss_dssp TT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTS-TTHHCHHH
T ss_pred hhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCc-cchHHHHH
Confidence 456655554444 222211 12334455566666666655433 3332222 44444444333333222 34444444
Q ss_pred HHHHhhc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 012442 205 FLNRVKK-IVD-PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 205 ~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (463)
-++.... ... .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4443322 222 22333333344555667777776666532 1444556666777777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 012442 283 ENCFPTLKFFSNALDILVK----LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358 (463)
Q Consensus 283 ~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (463)
.+ .| .+...+..++.. .+.+.+|..+|+++ . ....+++.+.+.+..++...|++++|.+++.+..+.+ +-
T Consensus 160 ~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El-~-~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~ 233 (290)
T PF04733_consen 160 ID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEEL-S-DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PN 233 (290)
T ss_dssp CS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHH-H-CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CC
T ss_pred cC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHH-H-hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cC
Confidence 53 22 333334443332 23577777777773 2 2234566677777777777777777777777776654 44
Q ss_pred CHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 012442 359 TPLNCATAITMLLDADEP-EIAIEIWNYILE 388 (463)
Q Consensus 359 ~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~ 388 (463)
+..+...++.+....|+. +.+.+++.++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 566666666666666665 556667776665
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=9.9e-07 Score=74.30 Aligned_cols=292 Identities=11% Similarity=0.088 Sum_probs=178.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH-HHHHH
Q 012442 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL-LSAIC 193 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-l~~~~ 193 (463)
-+++.+..+.+..+++.|++++..-.++.+.+....+.+..+|....++..|-..++++... .|...-|... ...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 35666667778888888888888887777777778888888888888888888888888764 4655555432 34455
Q ss_pred ccCCcHHHHHHHHHHhhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHH
Q 012442 194 RQENQTSRALEFLNRVKKIVDPDGDS--FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271 (463)
Q Consensus 194 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~ 271 (463)
+. +.+..|+.+...|... ++... ...-.......+++..+..++++.... + +..+.+.......+.|+++
T Consensus 90 ~A-~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-n----~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 90 KA-CIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-N----EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred Hh-cccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-C----ccchhccchheeeccccHH
Confidence 66 7788888888777653 22211 111122234567777777777776532 1 3345555555566778888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCC-------------CHH--------HHHH
Q 012442 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP-------------DSL--------TYNM 330 (463)
Q Consensus 272 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-------------~~~--------~~~~ 330 (463)
+|.+-|....+.+--.....|+..+ +..+.|+++.|.+...+ +...|++. |+. .-..
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSE-IieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISE-IIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHH-HHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 8888888776654333355666555 34466778888888877 45566542 110 1122
Q ss_pred HHH-------HHHHcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 012442 331 IFE-------CLIKNKRVHEVEKFFHEMIKN-EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402 (463)
Q Consensus 331 li~-------~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 402 (463)
++. .+.+.|+++.|.+.+..|--+ .-..|++|...+.-.-. .+++.+..+-+.-+.+.... ...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-PPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-ChHHHHHHH
Confidence 222 234566777777766666322 12345566554433222 23344444444445544332 345777777
Q ss_pred HHHHcCCCHHHHHHHHHH
Q 012442 403 VGLRNLGRLSDVRRFAEE 420 (463)
Q Consensus 403 ~~~~~~g~~~~a~~~~~~ 420 (463)
-.||+..-++-|-.++-+
T Consensus 318 llyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHhhhHHHhHHHHHHhh
Confidence 778888777777777655
No 94
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.88 E-value=1.2e-05 Score=76.55 Aligned_cols=130 Identities=12% Similarity=0.033 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012442 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370 (463)
Q Consensus 291 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 370 (463)
.|......+.+.+..++|...+.+.-. -..-....|......+...|..++|.+.|......+ +.+.....++..++
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 344556677788888888877776322 122345566666677788899999999999998876 66778899999999
Q ss_pred hCCCCHHHHHH--HHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 012442 371 LDADEPEIAIE--IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424 (463)
Q Consensus 371 ~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 424 (463)
.+.|+..-|.. ++..+.+.+ +.+...|..+...+-+.|+.++|.+.|....+.
T Consensus 729 le~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999888888 999999876 347889999999999999999999999887654
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.87 E-value=3.1e-05 Score=66.85 Aligned_cols=304 Identities=13% Similarity=0.045 Sum_probs=223.2
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH-H
Q 012442 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS-L 188 (463)
Q Consensus 110 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-l 188 (463)
+.++.-.--+.+.+...|++..|+.-|....+.++.+-.++..-...|...|+-.-|+.-|...++. +||-..-.. -
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3445555567788888999999999999998887777666666677888999999999999998875 777544322 2
Q ss_pred HHHHHccCCcHHHHHHHHHHhhcCCCC---CHH----------HH--HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch
Q 012442 189 LSAICRQENQTSRALEFLNRVKKIVDP---DGD----------SF--AILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253 (463)
Q Consensus 189 l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~----------~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 253 (463)
-..+.+. |.++.|..-|+.+.+.-+. ... .| ...+..+.-.|+...|+.....+.+ +.|-|
T Consensus 113 g~vllK~-Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE---i~~Wd 188 (504)
T KOG0624|consen 113 GVVLLKQ-GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE---IQPWD 188 (504)
T ss_pred chhhhhc-ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh---cCcch
Confidence 3456677 9999999999998762221 111 12 2244556778999999999999965 47778
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHH----HH
Q 012442 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT----YN 329 (463)
Q Consensus 254 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~ 329 (463)
+..|..-..+|...|++..|+.-++..-+.. ..++.++--+-..+...|+.+.+....++.++ +.||... |-
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YK 264 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYK 264 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHH
Confidence 8889999999999999999998888876654 34566777777888899999999999988655 4455432 21
Q ss_pred HH---------HHHHHHcCCHhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-hh
Q 012442 330 MI---------FECLIKNKRVHEVEKFFHEMIKNEWQPTP---LNCATAITMLLDADEPEIAIEIWNYILENGILPL-EA 396 (463)
Q Consensus 330 ~l---------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~ 396 (463)
.| +......+++-++++-.+...+..-.... ..+..+-.++...|++.+|++...+..+. .|+ ..
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~ 342 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHH
Confidence 11 12234456777777777777765311122 23445666777889999999999999874 444 67
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 012442 397 SANELLVGLRNLGRLSDVRRFAEEMLNRR 425 (463)
Q Consensus 397 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 425 (463)
++.--..+|.-...+++|+.-|+...+.+
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 77777888988889999999888887654
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.4e-05 Score=71.60 Aligned_cols=342 Identities=13% Similarity=0.067 Sum_probs=219.9
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...|+++.|..+|..+..-.++|.+.|+.=..+|+..|++++|++=-.+-.+..+.=...|+-...++.-.|++++|+.-
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 34677888888887776666667788888888888888888887766666666554455677777777778888888887
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHH-----------------------------------------HccC---------CcH
Q 012442 170 FDVMSMHGVEQDVVAVNSLLSAI-----------------------------------------CRQE---------NQT 199 (463)
Q Consensus 170 ~~~m~~~g~~~~~~~~~~ll~~~-----------------------------------------~~~~---------~~~ 199 (463)
|.+-++.. +.+...++.+..++ -+.. ..+
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 77766542 22222333333332 1100 001
Q ss_pred HHHHHHHHHhh------c-------CCCC------------C----------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012442 200 SRALEFLNRVK------K-------IVDP------------D----------GDSFAILLEGWEKEGNVEEANKTFGEMV 244 (463)
Q Consensus 200 ~~a~~~~~~~~------~-------~~~~------------~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (463)
..+.-.+.... . ...| | ..-...+.+...+..+++.|.+-+....
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 11111110000 0 0011 0 0112345666677778888888888776
Q ss_pred HhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHH-------HHHHHHHcCCHhHHHHHHHHHHH
Q 012442 245 ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN-------ALDILVKLNDSTHAVQLWDIMMV 317 (463)
Q Consensus 245 ~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-------ll~~~~~~g~~~~a~~~~~~~~~ 317 (463)
.. . .++.-++....+|...|.+.+....-....+.|.. ...-|+. +..+|.+.++++.++..|.+.+.
T Consensus 252 el---~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 252 EL---A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred hH---h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 53 3 36666777778888888888887777776666522 1222332 33466677889999999988533
Q ss_pred hcCCCCCHHHH-------------------------HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhC
Q 012442 318 FHGAFPDSLTY-------------------------NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372 (463)
Q Consensus 318 ~~~~~~~~~~~-------------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 372 (463)
.. ..|+...- -.-...+.+.|++..|++.|.+++... +-|...|....-+|.+
T Consensus 327 e~-Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 327 EH-RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLK 404 (539)
T ss_pred hh-cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHH
Confidence 22 22222111 111334667899999999999999987 8899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHH
Q 012442 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442 (463)
Q Consensus 373 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 442 (463)
.|.+..|++-.+...+.. ++....|..=..++....+|++|++.|++..+.+ |+..-+..-++-|..
T Consensus 405 L~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 405 LGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 999999999988888763 2233455555556667788999999999988776 565555555555555
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.85 E-value=4.2e-06 Score=84.43 Aligned_cols=215 Identities=13% Similarity=0.123 Sum_probs=145.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc-----CHHHHHHHHHHHHccCCcHHHHHHHHHH
Q 012442 134 NAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ-----DVVAVNSLLSAICRQENQTSRALEFLNR 208 (463)
Q Consensus 134 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 208 (463)
+=|+.....++.+...|-..|....+.++.++|.++.++.+.. |.+ -...|.++++.-... |.-+...++|++
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~y-G~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAY-GTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhh-CcHHHHHHHHHH
Confidence 3344555555556777888888888888888888888887643 211 123566666666666 777777888888
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 012442 209 VKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288 (463)
Q Consensus 209 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 288 (463)
+.+-..| -.+|..|...|.+.+.+++|.++++.|.++++- ....|...+..+.+.++-++|..++.+.++.= |.
T Consensus 1523 Acqycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q---~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l--Pk 1596 (1710)
T KOG1070|consen 1523 ACQYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ---TRKVWIMYADFLLRQNEAEAARELLKRALKSL--PK 1596 (1710)
T ss_pred HHHhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc---hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc--ch
Confidence 7763322 345677788888888888888888888877662 34478888888888888888888887776642 32
Q ss_pred ---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 012442 289 ---LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358 (463)
Q Consensus 289 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (463)
.......+..-.+.|+.+.+..+|+..+... +.....|+..|+.-.++|+.+.+..+|++.+..++.+
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 2234444555567777777777777754432 3345567777777777777777777777777776544
No 98
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.85 E-value=6.9e-05 Score=70.15 Aligned_cols=324 Identities=10% Similarity=0.037 Sum_probs=214.0
Q ss_pred HHHHhccCCchHHHHHHHHhcCCCCC------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC----HHHHHHHHH
Q 012442 86 EVLQLSYDSPSSAVDFFRWAGRGQRL------SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS----LPTFASIFD 155 (463)
Q Consensus 86 ~~l~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~li~ 155 (463)
.......|++.+-...|..+.+...| -...|..+.+.|-..|+++.|..+|++...-..+. ..+|..-..
T Consensus 354 kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 354 KRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAE 433 (835)
T ss_pred hhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 33334456777777777766552222 23468899999999999999999999987766543 456666667
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCC-----------c------CHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHH
Q 012442 156 SYCGAGKYDEAVMSFDVMSMHGVE-----------Q------DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGD 218 (463)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~g~~-----------~------~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 218 (463)
.=.+..+++.|+++.+......-. + +...|...++.--.. |-++....+|+.+.+----++.
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~-gtfestk~vYdriidLriaTPq 512 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL-GTFESTKAVYDRIIDLRIATPQ 512 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhcCCHH
Confidence 777788899999988877532111 1 123344444444455 7788888888887762223344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHcc---CCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012442 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG---KQVDEALKFLRVMKGENCFPTLKFFSNA 295 (463)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~l 295 (463)
........+-...-++++.++|+.=..-+ --|.--..|+..+.-+.+. ..++.|..+|++.++ |++|...-+--|
T Consensus 513 ii~NyAmfLEeh~yfeesFk~YErgI~LF-k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyL 590 (835)
T KOG2047|consen 513 IIINYAMFLEEHKYFEESFKAYERGISLF-KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYL 590 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHcCCccC-CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHH
Confidence 44444445556677888988888765421 1232335677777666554 578999999999998 777654433333
Q ss_pred HHH--HHHcCCHhHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHH---HHHH
Q 012442 296 LDI--LVKLNDSTHAVQLWDIMMVFHGAFPD--SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA---TAIT 368 (463)
Q Consensus 296 l~~--~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~li~ 368 (463)
+-+ --+-|....|..+++++ ..++++. ...||..|.-....=-+.....+|++.++. -|+...-. -...
T Consensus 591 lYA~lEEe~GLar~amsiyera--t~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAd 666 (835)
T KOG2047|consen 591 LYAKLEEEHGLARHAMSIYERA--TSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFAD 666 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHH
Confidence 322 23458888999999984 2334433 457888887666655567778889998886 56655433 3344
Q ss_pred HHhCCCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHcCCCHHHHHH
Q 012442 369 MLLDADEPEIAIEIWNYILEN-GILPLEASANELLVGLRNLGRLSDVRR 416 (463)
Q Consensus 369 ~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~ 416 (463)
.=++.|.++.|..++....+. +...+...|.+.=.--.++|+-+...+
T Consensus 667 lEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 667 LETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred HhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 557889999999999877663 344466788888888889998444333
No 99
>PLN02789 farnesyltranstransferase
Probab=98.84 E-value=5.6e-06 Score=74.10 Aligned_cols=205 Identities=11% Similarity=0.002 Sum_probs=155.3
Q ss_pred ccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCh--HHHH
Q 012442 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNG-RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKY--DEAV 167 (463)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~--~~A~ 167 (463)
..++.++|+.+.+.+....+-+..+|+.-..++...| ++++++..++.+.+.++.+..+|+.....+.+.|+. ++++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 4567888999998888777777778888877887777 679999999999998888888888776666666653 6778
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc---CCH----HHHHHHH
Q 012442 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE---GNV----EEANKTF 240 (463)
Q Consensus 168 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~a~~~~ 240 (463)
..++++.+.. +-|..+|+...-++... |+++++++.++++.+..+.|...|+.....+.+. |.. ++..+..
T Consensus 129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l-~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLD-AKNYHAWSHRQWVLRTL-GGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 8888888765 56778888888888888 8999999999998886777888888777666554 222 4566666
Q ss_pred HHHHHhcCCCCchHhhHHHHHHHHHcc----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 012442 241 GEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301 (463)
Q Consensus 241 ~~~~~~~~~~p~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 301 (463)
.+.... .|+|..+|+-+...+... +...+|.+.+.+....+ +.+......|++.|+.
T Consensus 207 ~~aI~~---~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILA---NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHh---CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 666544 788888998888888773 34456777877766644 3456677778877775
No 100
>PLN02789 farnesyltranstransferase
Probab=98.82 E-value=1.6e-05 Score=71.15 Aligned_cols=210 Identities=8% Similarity=0.002 Sum_probs=140.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc
Q 012442 120 VDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG-KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198 (463)
Q Consensus 120 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 198 (463)
-..+...++.++|+.++.++.+.++.+..+|+..-.++...| ++++++..++++.+.. +-+..+|+..-..+.+. |.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l-~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL-GP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc-Cc
Confidence 334556688999999999999988888888888777777777 6799999999988764 44555676555455555 54
Q ss_pred --HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHcc---CCH---
Q 012442 199 --TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG---KQV--- 270 (463)
Q Consensus 199 --~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~---~~~--- 270 (463)
.++++.+++.+.+..+.|..+|+...-++...|+++++++.++++.+. .|.|..+|+.....+.+. |..
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhcccccccccc
Confidence 367788888887777788888888888888888999999999988765 666777888777666544 222
Q ss_pred -HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 012442 271 -DEALKFLRVMKGENCFPTLKFFSNALDILVKL----NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337 (463)
Q Consensus 271 -~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (463)
++.++...++.... +-+...|+.+...+... +...+|...+.++.. . -..+......|++.|+.
T Consensus 199 ~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~-~-~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS-K-DSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc-c-cCCcHHHHHHHHHHHHh
Confidence 34555555555543 33455666666555552 233445555555222 1 12234445555555553
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=1.1e-06 Score=82.84 Aligned_cols=207 Identities=17% Similarity=0.150 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 012442 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 194 (463)
.|.-+|.+|...|+..+|..+...-.+ ..++...|..+.+.....--+++|.++.+..... .-..+-....+
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~ 497 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILS 497 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhcccccc
Confidence 444455555555555555554444333 3344444444444444444444454444443211 00111111122
Q ss_pred cCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHH
Q 012442 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274 (463)
Q Consensus 195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~ 274 (463)
. ++++++.+.|+.-..-.+.-..+|..+..+..+.++++.|.+.|..... ..|++...||.+-.+|.+.++-.+|.
T Consensus 498 ~-~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 498 N-KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred c-hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHH
Confidence 3 5555555555554443344455666666666666666666666666643 36666666666666666666666666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 012442 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFEC 334 (463)
Q Consensus 275 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 334 (463)
..+.+..+.+ .-+...|...+....+.|.+++|.+.+.++........|......++..
T Consensus 574 ~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 574 RKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHH
Confidence 6666666655 3334455555555566666666666666653333222344444444433
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.79 E-value=1.6e-06 Score=75.12 Aligned_cols=183 Identities=10% Similarity=-0.028 Sum_probs=104.1
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHH---
Q 012442 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV--- 183 (463)
Q Consensus 110 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--- 183 (463)
......+..+...+...|++++|...|+++....+.+ ..++..+..++.+.|++++|...++++.+.. |+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchH
Confidence 4556677777778888888888888888877766543 2466777788888888888888888887642 3211
Q ss_pred -HHHHHHHHHHcc-------CCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHh
Q 012442 184 -AVNSLLSAICRQ-------ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVL 255 (463)
Q Consensus 184 -~~~~ll~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 255 (463)
++..+..++... .|+++.|.+.|+.+....+.+...+..+.... .+... -..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~--------------~~~~~------~~~ 167 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMD--------------YLRNR------LAG 167 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHH--------------HHHHH------HHH
Confidence 233333333321 15567777777776654333333322221110 00000 000
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 256 AYETFLITLIRGKQVDEALKFLRVMKGENC--FPTLKFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
....+...+.+.|++++|...++...+... +.....+..+..++.+.|++++|..+++.
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 112334556666666666666666655421 11234566666666666666666666665
No 103
>PF12854 PPR_1: PPR repeat
Probab=98.78 E-value=8.6e-09 Score=57.91 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=17.8
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 012442 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEM 421 (463)
Q Consensus 390 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 421 (463)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=2.9e-05 Score=81.64 Aligned_cols=308 Identities=14% Similarity=0.002 Sum_probs=186.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCC-------C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH----H
Q 012442 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGV-------L--SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV----V 183 (463)
Q Consensus 117 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~ 183 (463)
......+...|+++++...+......-. + .......+...+...|++++|...+++....--..+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3444555677888888888877644211 1 1122223344566788999999988887653111121 2
Q ss_pred HHHHHHHHHHccCCcHHHHHHHHHHhhc---CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---cCCC--Cc
Q 012442 184 AVNSLLSAICRQENQTSRALEFLNRVKK---IV-DP--DGDSFAILLEGWEKEGNVEEANKTFGEMVER---FEWN--PE 252 (463)
Q Consensus 184 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~--p~ 252 (463)
..+.+...+... |++++|...+++... .. .+ ...++..+...+...|++++|...+++.... .+.. +.
T Consensus 493 a~~~lg~~~~~~-G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 493 ATSVLGEVHHCK-GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 334445555666 999999888887654 11 11 1234556677788889999998888776542 1111 11
Q ss_pred hHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC--CCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHH
Q 012442 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGEN--CFP--TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328 (463)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 328 (463)
....+..+...+...|++++|...+++..... ..+ ....+..+...+...|+.+.|...++..............+
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 22234455566777799999988888765431 112 12344455667778899999988888753321111111111
Q ss_pred -----HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCCC-h
Q 012442 329 -----NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP---LNCATAITMLLDADEPEIAIEIWNYILEN----GILPL-E 395 (463)
Q Consensus 329 -----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~ 395 (463)
...+..+...|+.+.|...+............ ..+..+..++...|+.++|...+++.... |...+ .
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 11223445578888888887775542211111 11345667788899999999999887753 32222 2
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 012442 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRR 425 (463)
Q Consensus 396 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 425 (463)
.+...+..++.+.|+.++|...+.+..+..
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 345556678889999999999999887653
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=7.6e-05 Score=78.50 Aligned_cols=336 Identities=8% Similarity=-0.027 Sum_probs=203.2
Q ss_pred HHHhCCChHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--C----CcCHH--HHHHHHHHH
Q 012442 122 VLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG--V----EQDVV--AVNSLLSAI 192 (463)
Q Consensus 122 ~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~~~~~--~~~~ll~~~ 192 (463)
.+...|+++.+...++.+..... .+..........+...|++++|...+......- . .+... ....+-..+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34455677766666665532211 122223344555677899999999998875421 0 11111 112222334
Q ss_pred HccCCcHHHHHHHHHHhhcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCchHhhHHHHHHHH
Q 012442 193 CRQENQTSRALEFLNRVKKIVDP-D----GDSFAILLEGWEKEGNVEEANKTFGEMVERF---EWNPEHVLAYETFLITL 264 (463)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~~li~~~ 264 (463)
... |+++.|...+++.....+. + ....+.+...+...|++++|...+.+..... |-......++..+...+
T Consensus 463 ~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 463 IND-GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HhC-CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 456 9999999999986552221 2 2345667777888999999999998876431 11110123455667788
Q ss_pred HccCCHHHHHHHHHHHhhC----CCC--C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcC-CCC--CHHHHHHHHHH
Q 012442 265 IRGKQVDEALKFLRVMKGE----NCF--P-TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG-AFP--DSLTYNMIFEC 334 (463)
Q Consensus 265 ~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~--~~~~~~~li~~ 334 (463)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+...... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998886542 211 1 223345556677788999999999888533211 112 23344456667
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHH
Q 012442 335 LIKNKRVHEVEKFFHEMIKNEWQ-PTPLNC-----ATAITMLLDADEPEIAIEIWNYILENGILPLE---ASANELLVGL 405 (463)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~ 405 (463)
+...|++++|.+.+.+.....-. .....+ ...+..+...|+.+.|...+............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 78899999999999888552101 111111 11224455688999999987765532111111 1134566788
Q ss_pred HcCCCHHHHHHHHHHHHHC----CCccC-HHHHHHHHHHHHHhcch--hhhHHHHHHHHH
Q 012442 406 RNLGRLSDVRRFAEEMLNR----RILIY-EVTMHKLKKAFYNESRS--MRDIFDSLERRC 458 (463)
Q Consensus 406 ~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~g~~--a~~~~~~~~~~~ 458 (463)
...|++++|..++++.... |...+ ..+...+-.++.+.|+. |...+.+.++-.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999987653 33222 23566667788888987 666655555433
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.76 E-value=0.00016 Score=66.46 Aligned_cols=152 Identities=9% Similarity=0.113 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHhHHHHH
Q 012442 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP-DSLTYNMIFECLIKNKRVHEVEKF 347 (463)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 347 (463)
..+....++.++...-..--+.+|...++...+..-++.|..+|.++ ...+..+ .+..++++|..||. ++.+.|.++
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka-R~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrI 423 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKA-REDKRTRHHVFVAAALMEYYCS-KDKETAFRI 423 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHH-hhccCCcchhhHHHHHHHHHhc-CChhHHHHH
Confidence 35666677777765543333567888899999999999999999995 5555544 88889999987764 778999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012442 348 FHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE--ASANELLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
|+--... ...+..--...++-+...++-..+..+|++....++.++. ..|..+++--..-|+...+.++-+++..
T Consensus 424 FeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 424 FELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9986654 2334444567788888999999999999999988666554 5999999999999999999998888764
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.76 E-value=1.3e-08 Score=57.14 Aligned_cols=32 Identities=41% Similarity=0.644 Sum_probs=14.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 320 GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351 (463)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 351 (463)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.76 E-value=2.1e-06 Score=74.43 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=32.1
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 331 IFECLIKNKRVHEVEKFFHEMIKNE--WQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
+...|.+.|++++|...+++..+.. -+.....+..+..++...|+.++|..+++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344556666666666666665541 112234555666666666666666666655544
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=7.9e-07 Score=83.82 Aligned_cols=203 Identities=12% Similarity=0.077 Sum_probs=87.8
Q ss_pred CcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHH
Q 012442 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~ 276 (463)
|-...|..+|+++. .|.-++.+|+..|+.++|..+..+..++ .| +...|..+.+......-+++|.++
T Consensus 412 GitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek---~~-d~~lyc~LGDv~~d~s~yEkawEl 479 (777)
T KOG1128|consen 412 GITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK---DP-DPRLYCLLGDVLHDPSLYEKAWEL 479 (777)
T ss_pred chHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC---CC-cchhHHHhhhhccChHHHHHHHHH
Confidence 44455555554432 2444444555555555554444444332 22 444444444444444444444444
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 012442 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356 (463)
Q Consensus 277 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 356 (463)
++..... .-..+.......++++++.+.|+..+..... -..+|-.+-.+..+.++++.|.+.|..-....
T Consensus 480 sn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~- 549 (777)
T KOG1128|consen 480 SNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE- 549 (777)
T ss_pred hhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-
Confidence 4433221 0000111112234455555555443332222 22334444444444455555555555544432
Q ss_pred CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012442 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML 422 (463)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 422 (463)
+-+...|+.+-.+|.+.|+-.+|...+++..+.+ .-+...|.-.+......|.+++|++.+.++.
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 3334445555555555555555555555554443 2233344444444445555555555554443
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.75 E-value=3.5e-06 Score=70.09 Aligned_cols=166 Identities=13% Similarity=0.124 Sum_probs=119.2
Q ss_pred cCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHH
Q 012442 142 DGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221 (463)
Q Consensus 142 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 221 (463)
..+.+... ..+-..+.-.|+-+....+..+..... .-|....+.+.....+. |++..|...|++....-++|...|+
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~-g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRN-GNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHh-cchHHHHHHHHHHhccCCCChhhhh
Confidence 33334444 555566666777777777776654321 34455556677777777 8888888888888877788888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 012442 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301 (463)
Q Consensus 222 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 301 (463)
.+.-+|.+.|++++|..-|.+..+- .|.+....|.+.-.+.-.|+++.|..++......+ .-|..+-..+......
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L---~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~ 214 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALEL---APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGL 214 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHh---ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhh
Confidence 8888888888888888888877654 55556677888888888888888888888777665 3366666777777788
Q ss_pred cCCHhHHHHHHHH
Q 012442 302 LNDSTHAVQLWDI 314 (463)
Q Consensus 302 ~g~~~~a~~~~~~ 314 (463)
.|+++.|..+...
T Consensus 215 ~g~~~~A~~i~~~ 227 (257)
T COG5010 215 QGDFREAEDIAVQ 227 (257)
T ss_pred cCChHHHHhhccc
Confidence 8888888777665
No 111
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.74 E-value=0.00031 Score=68.49 Aligned_cols=101 Identities=7% Similarity=0.056 Sum_probs=83.1
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHhccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH
Q 012442 68 IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL 147 (463)
Q Consensus 68 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 147 (463)
....+++.+..+..-.+.++.....|+.++|..+++....-...|..+...+-.+|.+.++.++|..+|+......+. .
T Consensus 32 ~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-e 110 (932)
T KOG2053|consen 32 LGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-E 110 (932)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-H
Confidence 566777788888888888888888999999999998776655569999999999999999999999999998887654 7
Q ss_pred HHHHHHHHHHHhcCChHHHHHH
Q 012442 148 PTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~ 169 (463)
.....+..+|++.+++.+-.++
T Consensus 111 ell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 111 ELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888877654333
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=2.9e-06 Score=70.52 Aligned_cols=152 Identities=12% Similarity=0.023 Sum_probs=122.6
Q ss_pred ccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 012442 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170 (463)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (463)
..|+-+.+..+........+.|....+.++....+.|++..|...|.+.....++|..+|+.+.-+|.+.|++++|..-|
T Consensus 78 ~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay 157 (257)
T COG5010 78 LRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAY 157 (257)
T ss_pred hcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHH
Confidence 35777777777777666778888888888999999999999999999988888889999999999999999999999988
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012442 171 DVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244 (463)
Q Consensus 171 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (463)
.+..+.. .-+...+|.+.-.+.-. |+.+.|..++......-.-|..+-..+.-.....|++++|..+...-.
T Consensus 158 ~qAl~L~-~~~p~~~nNlgms~~L~-gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 158 RQALELA-PNEPSIANNLGMSLLLR-GDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHhc-cCCchhhhhHHHHHHHc-CCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 8888753 33455566666666667 889999888888777666677888888888888888888888776544
No 113
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=8.1e-05 Score=73.14 Aligned_cols=251 Identities=16% Similarity=0.167 Sum_probs=114.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012442 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236 (463)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 236 (463)
+...+-+++|..+|++.. .+....+.|+.-. +..+.|.++-++.. ...+|..+..+-.+.|.+.+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~i----~~ldRA~efAe~~n-----~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIENI----GSLDRAYEFAERCN-----EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHHh----hhHHHHHHHHHhhC-----ChHHHHHHHHHHHhcCchHHH
Confidence 334445556666655542 3333333333322 44444444444432 234566666666666666666
Q ss_pred HHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 012442 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316 (463)
Q Consensus 237 ~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 316 (463)
.+-|-.. +|+..|..+++...+.|.|++-.+++....+..-.|... +.|+-+|++.+++.+-++.+.
T Consensus 1124 ieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~--- 1190 (1666)
T KOG0985|consen 1124 IESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA--- 1190 (1666)
T ss_pred HHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---
Confidence 5544322 134456666666666666666666665555544343322 345555666555554443332
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHhCCCCH
Q 012442 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE--------------------WQPTPLNCATAITMLLDADEP 376 (463)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~li~~~~~~g~~ 376 (463)
-||......+.+-|...|.++.|.-+|....... -..+..||..+-.+|...+.+
T Consensus 1191 -----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1191 -----GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred -----CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhh
Confidence 1344444444444444444444443333221000 011333444444444433332
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHHHhcch
Q 012442 377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRIL-IYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 377 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~ 446 (463)
.-| +|....+.....-..-++.-|-..|-+++...+++... |+. ..--.|.-|.-.|.+-.-.
T Consensus 1266 rlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYskykp~ 1329 (1666)
T KOG0985|consen 1266 RLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSKYKPE 1329 (1666)
T ss_pred hHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhcCHH
Confidence 222 12222222233344556666666666666666665543 221 2223445554455554443
No 114
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.65 E-value=3.8e-05 Score=75.29 Aligned_cols=185 Identities=12% Similarity=0.007 Sum_probs=128.8
Q ss_pred CCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012442 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172 (463)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 172 (463)
.+...|+..|-...+..+.=...|..|...|....+...|.+-|+...+.+.-+...+......|++..+++.|..+.-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45566666666555544555668888999998888888999999988888877888888888999999999998888333
Q ss_pred HHhCC-CCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 012442 173 MSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251 (463)
Q Consensus 173 m~~~g-~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 251 (463)
.-+.. ...-...|..+--.|.+. ++...+...|+...+-.+.|...|..+..+|..+|.+..|.++|..... +.|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea-~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEA-HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRP 627 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCc-cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCc
Confidence 22211 001112222333334455 7788888888887776677888888888888888888888888887744 467
Q ss_pred chHhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 012442 252 EHVLAYETFLITLIRGKQVDEALKFLRVMK 281 (463)
Q Consensus 252 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 281 (463)
.+...--......+..|.+.+++..+....
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 544333334445566688888887777664
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.65 E-value=1.7e-05 Score=78.28 Aligned_cols=181 Identities=7% Similarity=-0.012 Sum_probs=125.8
Q ss_pred CcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHH
Q 012442 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258 (463)
Q Consensus 179 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 258 (463)
..+...+-.|.....+. |.+++|..+++...+-.+-+......++..+.+.+++++|...+++..+. .|++.....
T Consensus 83 ~~~~~~~~~La~i~~~~-g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAA-HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHH
Confidence 45566777777777777 88888888888887766677777888888888888888888888888655 777777788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 012442 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338 (463)
Q Consensus 259 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 338 (463)
.+...+.+.|++++|..+|+++...+ +-+..++..+..++-..|+.++|...|+......+ +...-|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~--~~~~~~~~~~------ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG--DGARKLTRRL------ 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--cchHHHHHHH------
Confidence 88888888888888888888888743 33467788888888888888888888888655443 3444454443
Q ss_pred CCHhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHhC
Q 012442 339 KRVHEVEKFFHEMIKNE----WQPTPLNCATAITMLLD 372 (463)
Q Consensus 339 ~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~ 372 (463)
++...-..+++++.-.+ ..........+|.-|.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 230 VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 33444555566554332 22333444555555543
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.64 E-value=3e-05 Score=77.57 Aligned_cols=237 Identities=7% Similarity=0.019 Sum_probs=150.3
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 012442 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188 (463)
Q Consensus 109 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 188 (463)
.+.+...+..|+..+...+++++|.++.+...+..+.....|-.+...+.+.++.+++..+ .+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l-------------- 90 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI-------------- 90 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh--------------
Confidence 4667788999999999999999999999987777766666666666677888886666555 222
Q ss_pred HHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccC
Q 012442 189 LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK 268 (463)
Q Consensus 189 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~ 268 (463)
...... .++..+..+...|.. ..-+...+..+..+|-+.|+.++|.++|+++.+- .|.|+.+.|.+...|...
T Consensus 91 -~~~~~~-~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 91 -DSFSQN-LKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKA---DRDNPEIVKKLATSYEEE- 163 (906)
T ss_pred -hhcccc-cchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHh-
Confidence 222223 344333333333333 3344557778888888888888888888888664 577888888888888888
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHH---H--HHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhH
Q 012442 269 QVDEALKFLRVMKGENCFPTLKFFSNALDI---L--VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHE 343 (463)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~---~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 343 (463)
++++|.+++.+....-+ +..-|+.+... + ....+.+.-.++.+.+....+...-+.++--+-..|-..+++++
T Consensus 164 dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 164 DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 88888888887755411 01111111111 0 11122333333333333333333444555566666777777888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 012442 344 VEKFFHEMIKNEWQPTPLNCATAITMLL 371 (463)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~li~~~~ 371 (463)
+..+++.+++.. +-|.....-++.+|.
T Consensus 242 ~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 242 VIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 888888887775 556666666666665
No 117
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=4.5e-05 Score=63.16 Aligned_cols=152 Identities=15% Similarity=0.184 Sum_probs=76.4
Q ss_pred CcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHH
Q 012442 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~ 276 (463)
|+.+.|...++++...++.+..+-..-.-.+-..|++++|+++|+.+.+. +|.|..++-.-+...-..|+.-+|++-
T Consensus 66 ~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 66 GRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred cchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 55555666665555544333333333333344456666666666666544 455555555555555555555555555
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHHH
Q 012442 277 LRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN---KRVHEVEKFFHEMIK 353 (463)
Q Consensus 277 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~ 353 (463)
+.+..+. +..|...|.-+...|...|++++|.-.+++++-.... +...+..+.+.+.-. .+.+.+.++|.+.++
T Consensus 143 ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~--n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 143 LNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF--NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5555544 3445556666666666666666666666654432211 222233333332222 244455555555554
Q ss_pred C
Q 012442 354 N 354 (463)
Q Consensus 354 ~ 354 (463)
.
T Consensus 220 l 220 (289)
T KOG3060|consen 220 L 220 (289)
T ss_pred h
Confidence 3
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=1.9e-05 Score=78.95 Aligned_cols=220 Identities=10% Similarity=0.069 Sum_probs=146.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH-HHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHH
Q 012442 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS-AICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223 (463)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 223 (463)
.+...+..|+..+...+++++|.++.+...+. .|+...+..+.. .+.+. ++.+.+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~-~~~~~~~lv----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSR-RPLNDSNLL----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhh-cchhhhhhh----------------hh
Confidence 46788999999999999999999999977765 555544433333 44444 554444333 34
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 012442 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303 (463)
Q Consensus 224 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 303 (463)
+.......++.-+..+...+.. .+.+..++..+..+|-+.|+.+++..+++++.+.. +-|..+.|.+...|...
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~----~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILL----YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhcccccchhHHHHHHHHHHh----hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-
Confidence 4555555666445555555544 34455688999999999999999999999999987 56788999999999999
Q ss_pred CHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC-------------------CCCCHHHHH
Q 012442 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE-------------------WQPTPLNCA 364 (463)
Q Consensus 304 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~ 364 (463)
++++|.+++.+++.. |...+++..+.++|.++.+.. ..--..++.
T Consensus 164 dL~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~ 227 (906)
T PRK14720 164 DKEKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLE 227 (906)
T ss_pred hHHHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHH
Confidence 999999999885432 455556666666666666553 111222233
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 012442 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLR 406 (463)
Q Consensus 365 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 406 (463)
.+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 3344555555566666666666654322 3344444555443
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.58 E-value=3.5e-06 Score=70.17 Aligned_cols=119 Identities=11% Similarity=0.141 Sum_probs=84.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH-HccCCc--HHHH
Q 012442 126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI-CRQENQ--TSRA 202 (463)
Q Consensus 126 ~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~-~~~~~~--~~~a 202 (463)
.++.+++...++...+.++.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ... |+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~-g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQA-GQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc-CCCCcHHH
Confidence 5666777777777777777777777777777777777777777777777654 34555565555543 444 55 4777
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012442 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246 (463)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 246 (463)
.+++++..+..+.+..++..+...+.+.|++++|...|+.+.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777766667777777777777778888888877777653
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=4.7e-05 Score=69.10 Aligned_cols=247 Identities=13% Similarity=0.016 Sum_probs=154.9
Q ss_pred HHHHHhCC-ChHHHHHHHHHHHH---cC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCcCHHHHHHHHHHH
Q 012442 120 VDVLGKNG-RFEQMWNAVRVMKE---DG-VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG--VEQDVVAVNSLLSAI 192 (463)
Q Consensus 120 i~~~~~~g-~~~~a~~~~~~m~~---~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~ 192 (463)
+..+.+.| +.....++|+++.. .+ .++.. ++..=.-..++.++...-+.+...+ -.|+...+...+.+.
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~ 284 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAK 284 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH
Confidence 34455566 56667788888774 22 12211 1111122234455555555554322 234555555555544
Q ss_pred HccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHH
Q 012442 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272 (463)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~ 272 (463)
... ..-..+-.++.+..+ +.-...+.-..-.+...|++++|+..++.+... .|+|+..+......+...|+.++
T Consensus 285 ~~~-~~~~~~~~~~~~~~~--~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~ 358 (484)
T COG4783 285 YEA-LPNQQAADLLAKRSK--RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKE 358 (484)
T ss_pred hcc-ccccchHHHHHHHhC--ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHH
Confidence 433 222233333222222 122233333444556678889999999888765 78788888888888889999999
Q ss_pred HHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 273 ALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351 (463)
Q Consensus 273 a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 351 (463)
|.+.++++.... |+ ....-.+..+|.+.|++.+|+.+++.... ..+-|...|..|.++|...|+..++..-..+.
T Consensus 359 A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 359 AIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 999999888764 55 55666778888889999999888887433 34557778888999999999888888887776
Q ss_pred HHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 012442 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399 (463)
Q Consensus 352 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 399 (463)
. ...|+++.|...+....+.. .++...|.
T Consensus 435 ~------------------~~~G~~~~A~~~l~~A~~~~-~~~~~~~a 463 (484)
T COG4783 435 Y------------------ALAGRLEQAIIFLMRASQQV-KLGFPDWA 463 (484)
T ss_pred H------------------HhCCCHHHHHHHHHHHHHhc-cCCcHHHH
Confidence 4 33578888888887777642 33433443
No 121
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=0.00019 Score=69.19 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=43.7
Q ss_pred HccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHH
Q 012442 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272 (463)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~ 272 (463)
....|+.+.|+.+|...+. |..+++..|-.|+.++|-++-++-. |..+...+...|-..|++.+
T Consensus 922 lES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~esg--------d~AAcYhlaR~YEn~g~v~~ 985 (1416)
T KOG3617|consen 922 LESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEESG--------DKAACYHLARMYENDGDVVK 985 (1416)
T ss_pred HhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHhcc--------cHHHHHHHHHHhhhhHHHHH
Confidence 3333666666666655443 4444455555556666555554432 44466677778888888888
Q ss_pred HHHHHHHHh
Q 012442 273 ALKFLRVMK 281 (463)
Q Consensus 273 a~~~~~~m~ 281 (463)
|...|.+..
T Consensus 986 Av~FfTrAq 994 (1416)
T KOG3617|consen 986 AVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHH
Confidence 887776653
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00013 Score=60.90 Aligned_cols=251 Identities=18% Similarity=0.165 Sum_probs=150.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 012442 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233 (463)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 233 (463)
++-+.-.|++..++..-....... -+...-.-+-++|... |.+... ..+++.+-.|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAl-g~~~~~---~~eI~~~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLAL-GQYQIV---ISEIKEGKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHc-cccccc---ccccccccCChHHHHHHHHHHhhCcchh
Confidence 344555677777776655544321 2222222334455555 543332 2333444445555555555555555555
Q ss_pred HHHHH-HHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 012442 234 EEANK-TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLW 312 (463)
Q Consensus 234 ~~a~~-~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 312 (463)
++-.. +.+.+... .... +......-...|++.|++++|++...... +......=+..+.+..+.+-|.+.+
T Consensus 89 ~~~~~~l~E~~a~~-~~~s-n~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 89 KSILASLYELVADS-TDGS-NLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred HHHHHHHHHHHHhh-ccch-hHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443 44444432 2222 32233334567888899999998887621 2333434445567788888899888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 313 DIMMVFHGAFPDSLTYNMIFECLIK----NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
+.|.. + .+..|.+.|..++.+ .+.+.+|.-+|++|.++ .+|+..+.+....++...|++++|..++++...
T Consensus 161 k~mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 161 KKMQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88522 1 245566666666655 45788899999999875 488889999999999999999999999999887
Q ss_pred cCCCCChhhHHHHHHHHHcCCC-HHHHHHHHHHHHHC
Q 012442 389 NGILPLEASANELLVGLRNLGR-LSDVRRFAEEMLNR 424 (463)
Q Consensus 389 ~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~ 424 (463)
+... ++.+..-++.+-...|. .+-..+.+.+++..
T Consensus 236 kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 236 KDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred ccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 6544 44444444444444444 44455666776654
No 123
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=0.0004 Score=63.87 Aligned_cols=298 Identities=9% Similarity=0.082 Sum_probs=185.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHccCC
Q 012442 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD-VVAVNSLLSAICRQEN 197 (463)
Q Consensus 119 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~ 197 (463)
-..+....|+++.|...|.+....++.|...|+.-..+|+..|++++|++--.+-.+. .|+ ...|.-.-.++.-. |
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~l-g 84 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGL-G 84 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhc-c
Confidence 3456678899999999999999999889999999999999999999999877776654 565 45677777777778 9
Q ss_pred cHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH---------------------HHHHHHHHHhcCCCCch---
Q 012442 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA---------------------NKTFGEMVERFEWNPEH--- 253 (463)
Q Consensus 198 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a---------------------~~~~~~~~~~~~~~p~~--- 253 (463)
++++|+.-|.+-.+..+.|...++-+..++.......+. ...|..+.+.....|.+
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999999987776677777777777776211000000 00000000000000000
Q ss_pred -----------------------------------------------------------HhhHHHHHHHHHccCCHHHHH
Q 012442 254 -----------------------------------------------------------VLAYETFLITLIRGKQVDEAL 274 (463)
Q Consensus 254 -----------------------------------------------------------~~~~~~li~~~~~~~~~~~a~ 274 (463)
..-...+.+...+..+++.|+
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 011233445555556666666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHH-------HHHHHHHHcCCHhHHHHH
Q 012442 275 KFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN-------MIFECLIKNKRVHEVEKF 347 (463)
Q Consensus 275 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------~li~~~~~~~~~~~a~~~ 347 (463)
+.+....+.. -+..-++....+|...|.+..+...-+...+ .|-. ...-|+ .+..+|.+.++++.+...
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E-~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVE-VGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHH-HhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 6666665554 3444455555666666666655555444222 1111 111122 223355566777888888
Q ss_pred HHHHHHCCCCCCHHHH-------------------------HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 012442 348 FHEMIKNEWQPTPLNC-------------------------ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402 (463)
Q Consensus 348 ~~~~~~~~~~~~~~~~-------------------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 402 (463)
|.+.......|+..+= ..=...+.+.|++..|.+.+.++++.. +-|...|.--.
T Consensus 321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRA 399 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRA 399 (539)
T ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHH
Confidence 8776655434433321 122455667778888888888877765 44667777777
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC
Q 012442 403 VGLRNLGRLSDVRRFAEEMLNR 424 (463)
Q Consensus 403 ~~~~~~g~~~~a~~~~~~m~~~ 424 (463)
-+|.+.|.+..|++-.+...+.
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc
Confidence 7788888888777766666554
No 124
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.56 E-value=0.00084 Score=65.58 Aligned_cols=219 Identities=17% Similarity=0.079 Sum_probs=111.2
Q ss_pred cCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 012442 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171 (463)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (463)
.++...|+...+...+..|....+-..-.-.+.|.|+.++|..+++.....+..|..|...+-.+|.+.|+.++|..+|+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 45556666666555543333322222122224566677777766666655555566666667777777777777777777
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHH
Q 012442 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN----------VEEANKTFG 241 (463)
Q Consensus 172 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~ 241 (463)
+.... .|+..-...+..+|++. +++.+-.+.--++-+.++.+...+-++++.+.+.-. ..-|.+.++
T Consensus 102 ~~~~~--~P~eell~~lFmayvR~-~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 102 RANQK--YPSEELLYHLFMAYVRE-KSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHhh--CCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 66654 45555556666666666 555554444444444455555555555555543221 223444455
Q ss_pred HHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHH-HHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 242 EMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL-RVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 242 ~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~-~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
.+.+..| .-.+..-.......+-..|++++|++++ ....+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 179 ~~l~~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 179 KLLEKKG-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHhccCC-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 5544322 1111111222223334445566666555 2333332223333334445555555555555555555
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=5.4e-06 Score=69.06 Aligned_cols=157 Identities=10% Similarity=0.087 Sum_probs=112.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcH
Q 012442 120 VDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQT 199 (463)
Q Consensus 120 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 199 (463)
+-.|...|+++.+......+... . ..+...++.+++...++...+.. +.|...|..+...|... |++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~--~---------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~-g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP--L---------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWR-NDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc--c---------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHC-CCH
Confidence 34566777777754443222111 0 11223566777777777777654 66777888888888888 899
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHH
Q 012442 200 SRALEFLNRVKKIVDPDGDSFAILLEGW-EKEGN--VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276 (463)
Q Consensus 200 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~ 276 (463)
+.|...|++..+..+.+...+..+..++ ...|+ .++|.+++++..+. .|++..++..+...+...|++++|+..
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~---dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL---DANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999888876677888888888764 66676 48888998888765 777788888888888888999999999
Q ss_pred HHHHhhCCCCCCHHHHH
Q 012442 277 LRVMKGENCFPTLKFFS 293 (463)
Q Consensus 277 ~~~m~~~~~~~~~~~~~ 293 (463)
|+++.+.. +|+..-+.
T Consensus 167 ~~~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 167 WQKVLDLN-SPRVNRTQ 182 (198)
T ss_pred HHHHHhhC-CCCccHHH
Confidence 99888775 44444433
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=9.3e-06 Score=63.92 Aligned_cols=83 Identities=12% Similarity=-0.023 Sum_probs=34.9
Q ss_pred CcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHH
Q 012442 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~ 276 (463)
|++++|...|+......+.+...|..+..++.+.|++++|...|+..... .|++..++..+..++...|++++|...
T Consensus 38 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l---~p~~~~a~~~lg~~l~~~g~~~eAi~~ 114 (144)
T PRK15359 38 GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML---DASHPEPVYQTGVCLKMMGEPGLAREA 114 (144)
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444444444443333334444444444444444444444444444322 333344444444444444444444444
Q ss_pred HHHHhh
Q 012442 277 LRVMKG 282 (463)
Q Consensus 277 ~~~m~~ 282 (463)
|+...+
T Consensus 115 ~~~Al~ 120 (144)
T PRK15359 115 FQTAIK 120 (144)
T ss_pred HHHHHH
Confidence 444433
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.54 E-value=2.2e-05 Score=77.65 Aligned_cols=185 Identities=10% Similarity=0.033 Sum_probs=142.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH
Q 012442 107 RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186 (463)
Q Consensus 107 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 186 (463)
+.++.++..+-.|..+..+.|++++|..+++...+..+.+......+...+.+.+++++|+..+++..... +-+.....
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 36788899999999999999999999999999999998889999999999999999999999999999874 33445555
Q ss_pred HHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHc
Q 012442 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266 (463)
Q Consensus 187 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~ 266 (463)
.+..++.+. |++++|..+|+++....+-+..++..+...+-+.|+.++|...|+...+.. .| ....|+.++
T Consensus 159 ~~a~~l~~~-g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~--~~-~~~~~~~~~----- 229 (694)
T PRK15179 159 LEAKSWDEI-GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI--GD-GARKLTRRL----- 229 (694)
T ss_pred HHHHHHHHh-cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--Cc-chHHHHHHH-----
Confidence 566666777 999999999999987556668999999999999999999999999998752 22 334454443
Q ss_pred cCCHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHHc
Q 012442 267 GKQVDEALKFLRVMKGENCF----PTLKFFSNALDILVKL 302 (463)
Q Consensus 267 ~~~~~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~ 302 (463)
++...-...++.+.-.+.. ........+|..|.+.
T Consensus 230 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 230 -VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred -HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 2344455566666444322 2233444455555443
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00024 Score=59.48 Aligned_cols=162 Identities=17% Similarity=0.155 Sum_probs=111.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 012442 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293 (463)
Q Consensus 214 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 293 (463)
..+......-...|+..|++++|++...... +....-.=...+.+..+.+-|.+.+++|.+.. +..|.+
T Consensus 105 ~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLt 173 (299)
T KOG3081|consen 105 GSNLIDLLLAAIIYMHDGDFDEALKALHLGE--------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLT 173 (299)
T ss_pred chhHHHHHHhhHHhhcCCChHHHHHHHhccc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHH
Confidence 3343444445667888888888888887632 33334444566777788888888888888764 567777
Q ss_pred HHHHHHHH----cCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012442 294 NALDILVK----LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369 (463)
Q Consensus 294 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 369 (463)
.|..++.+ .+.+.+|.-+|+++ . ....|+..+.+....++...|++++|..++++...+. .-++.+...++.+
T Consensus 174 QLA~awv~la~ggek~qdAfyifeE~-s-~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 174 QLAQAWVKLATGGEKIQDAFYIFEEL-S-EKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVL 250 (299)
T ss_pred HHHHHHHHHhccchhhhhHHHHHHHH-h-cccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHH
Confidence 77766654 35688888888884 3 2367888888888888888899999999999988876 4556666655555
Q ss_pred HhCCCCH-HHHHHHHHHHHHc
Q 012442 370 LLDADEP-EIAIEIWNYILEN 389 (463)
Q Consensus 370 ~~~~g~~-~~a~~~~~~~~~~ 389 (463)
-...|.. +-..+.+.+++..
T Consensus 251 a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 251 ALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHhCCChHHHHHHHHHHHhc
Confidence 4445544 4445566666653
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=1.2e-05 Score=63.36 Aligned_cols=55 Identities=7% Similarity=0.004 Sum_probs=23.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 012442 120 VDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174 (463)
Q Consensus 120 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 174 (463)
...+...|++++|...|+......+.+...|..+..++.+.|++++|...|+...
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333444444444444444444443344444444444444444444444444444
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=0.00014 Score=60.25 Aligned_cols=127 Identities=17% Similarity=0.150 Sum_probs=58.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 116 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
|..++-+....|+.+.|...++.+..+-+.+..+-..-...+-..|++++|+++++.+++.+ +-|.+++.-=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 34444444455555555555555554443232222222222333455555555555555443 33333443333333333
Q ss_pred CCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012442 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244 (463)
Q Consensus 196 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (463)
|.--+|++-+....+.+..|...|.-+...|...|++++|.-.++++.
T Consensus 134 -GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 134 -GKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred -CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 444444444444444444555555555555555555555555555553
No 131
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=4.5e-05 Score=73.26 Aligned_cols=244 Identities=12% Similarity=0.131 Sum_probs=162.1
Q ss_pred CCCCCHHHHHHHHHH--HHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-C-------
Q 012442 108 GQRLSPYAWNLMVDV--LGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH-G------- 177 (463)
Q Consensus 108 ~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g------- 177 (463)
...-|..+-..+++. |..-|+.+.|.+-++.++ +..+|..+.++|.+..+++-|.-.+..|... |
T Consensus 721 le~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 721 LENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred ccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 335666777777654 677789999888877765 4456888999999988888888777777532 1
Q ss_pred -CCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhh
Q 012442 178 -VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256 (463)
Q Consensus 178 -~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 256 (463)
..++ .+-.-+....... |..++|+.+|++-++ |..|=+.|-..|.|++|.++-+.-- .+... .|
T Consensus 796 ~q~~~-e~eakvAvLAieL-gMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~D---RiHLr--~T 860 (1416)
T KOG3617|consen 796 QQNGE-EDEAKVAVLAIEL-GMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKD---RIHLR--NT 860 (1416)
T ss_pred HhCCc-chhhHHHHHHHHH-hhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcc---ceehh--hh
Confidence 1222 1111122222344 888999999988765 5556667788899999988876542 22322 36
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHh----------hCCC---------CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 012442 257 YETFLITLIRGKQVDEALKFLRVMK----------GENC---------FPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317 (463)
Q Consensus 257 ~~~li~~~~~~~~~~~a~~~~~~m~----------~~~~---------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 317 (463)
|......+-..++.+.|++.|++.. .... .-|...|.-.....-..|+++.|+.+|...
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-- 938 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-- 938 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh--
Confidence 7777777777788888888887532 1110 113333444444445567777777777763
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 012442 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387 (463)
Q Consensus 318 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 387 (463)
.-|-+++...|-.|+.++|-++-++- | |......|...|-..|++.+|..+|.+..
T Consensus 939 --------~D~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 939 --------KDYFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred --------hhhhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 23566777777788888888776552 2 66667778888999999999988887654
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.42 E-value=1.6e-05 Score=62.17 Aligned_cols=96 Identities=16% Similarity=0.130 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 012442 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227 (463)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (463)
.....+...+...|++++|.+.|+.+...+ +.+...+..+...+... |++++|..+++......+.+...+..+...|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQML-KEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 333344444444444444444444444332 22333344444444444 4444444444444333333444444444444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 012442 228 EKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~ 245 (463)
...|++++|.+.|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444433
No 133
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.0024 Score=63.41 Aligned_cols=229 Identities=12% Similarity=0.053 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHH
Q 012442 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261 (463)
Q Consensus 182 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li 261 (463)
...|..+..+-.+. |...+|++-|-+. .|+..|..+++...+.|.|++-.+++...+++ .-.| . .=+.||
T Consensus 1104 p~vWsqlakAQL~~-~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~-~--id~eLi 1173 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQG-GLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREP-Y--IDSELI 1173 (1666)
T ss_pred hHHHHHHHHHHHhc-CchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCc-c--chHHHH
Confidence 34667777777766 7777776666443 35566777777777777777777777666554 3333 2 445677
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 012442 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRV 341 (463)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 341 (463)
-+|++.++..+.++++. -|+......+.+-|...|.++.|.-+|..+ .-|..|...+...|++
T Consensus 1174 ~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEY 1236 (1666)
T ss_pred HHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHH
Confidence 77777777666555442 255555555666666666666666555542 2233344444444444
Q ss_pred hHHHHHHHH------------------------HHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-Chh
Q 012442 342 HEVEKFFHE------------------------MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP-LEA 396 (463)
Q Consensus 342 ~~a~~~~~~------------------------~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~ 396 (463)
+.|.+.-++ |...++-....-..-++..|-..|-+++...+++.... ++. ..-
T Consensus 1237 Q~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG--LERAHMg 1314 (1666)
T KOG0985|consen 1237 QGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG--LERAHMG 1314 (1666)
T ss_pred HHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHHH
Confidence 444333222 22222333444566788899999999988888776553 221 223
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 397 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
.|+-|.-.|.+- +.++..+.++-.-.+ ...-.+++++-+..-|
T Consensus 1315 mfTELaiLYsky-kp~km~EHl~LFwsR------vNipKviRA~eqahlW 1357 (1666)
T KOG0985|consen 1315 MFTELAILYSKY-KPEKMMEHLKLFWSR------VNIPKVIRAAEQAHLW 1357 (1666)
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHh------cchHHHHHHHHHHHHH
Confidence 566666666654 456665555544332 3345678888777766
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=0.00053 Score=62.51 Aligned_cols=238 Identities=12% Similarity=0.063 Sum_probs=157.6
Q ss_pred CCchHHHHHHHHhcC----CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHhcCChHH
Q 012442 93 DSPSSAVDFFRWAGR----GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDE 165 (463)
Q Consensus 93 ~~~~~a~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~ 165 (463)
-++..-.++|+.+.. +..+... ++..=.-..++..+...-+.++..+. ++...+...+.+......-..
T Consensus 217 ydp~gM~~ff~rl~~~~~~~~~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~ 292 (484)
T COG4783 217 YDPQGMPEFFERLADQLRYGGQPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQ 292 (484)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccc
Confidence 456666677777662 2222222 12222223455566656666655443 455556666665554444444
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012442 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 166 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
+-.++.+..+ +-.........-.+... |.+++|+..++.+....+.|...+......+.+.++.++|.+.++.+..
T Consensus 293 ~~~~~~~~~~---~~~~aa~YG~A~~~~~~-~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~ 368 (484)
T COG4783 293 AADLLAKRSK---RGGLAAQYGRALQTYLA-GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA 368 (484)
T ss_pred hHHHHHHHhC---ccchHHHHHHHHHHHHh-cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 4444333332 11122222233334456 8899999999998887788888888888999999999999999998876
Q ss_pred hcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCH
Q 012442 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325 (463)
Q Consensus 246 ~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 325 (463)
. .|.....+-.+..+|.+.|++.+|+.++....... +-|...|..|..+|...|+..++..-..+
T Consensus 369 l---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE----------- 433 (484)
T COG4783 369 L---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE----------- 433 (484)
T ss_pred c---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH-----------
Confidence 5 77556677788889999999999999998887764 66788899999999999988877666555
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHH
Q 012442 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN 362 (463)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (463)
.|...|+++.|...+....+.. +.+..+
T Consensus 434 --------~~~~~G~~~~A~~~l~~A~~~~-~~~~~~ 461 (484)
T COG4783 434 --------GYALAGRLEQAIIFLMRASQQV-KLGFPD 461 (484)
T ss_pred --------HHHhCCCHHHHHHHHHHHHHhc-cCCcHH
Confidence 3566688888888888777653 334333
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.36 E-value=2.6e-05 Score=60.97 Aligned_cols=108 Identities=9% Similarity=0.053 Sum_probs=80.5
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC
Q 012442 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181 (463)
Q Consensus 102 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 181 (463)
|+.+....+.+......+...+...|++++|.+.|+.+...++.+...+..+...+.+.|++++|..+++...+.+ +.+
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~ 84 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDD 84 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 3444444445556677777778888888888888888877777777888888888888888888888888877654 445
Q ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHhhc
Q 012442 182 VVAVNSLLSAICRQENQTSRALEFLNRVKK 211 (463)
Q Consensus 182 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 211 (463)
...+..+...+... |++++|...|+...+
T Consensus 85 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 85 PRPYFHAAECLLAL-GEPESALKALDLAIE 113 (135)
T ss_pred hHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 66666677777777 888888888887766
No 136
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.35 E-value=0.00095 Score=65.97 Aligned_cols=114 Identities=15% Similarity=0.056 Sum_probs=64.5
Q ss_pred CchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCChHHHHHHHH
Q 012442 94 SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL--SLPTFASIFDSYCGAGKYDEAVMSFD 171 (463)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (463)
+...|.+.|+.+-+-...|..++....+.|++..+++.|..+.-..-+..+. -...|....-.|.+.++...|+.-|+
T Consensus 507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQ 586 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQ 586 (1238)
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHH
Confidence 6678888998888777888888999999999998888888774332222211 11112223333444444444444444
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHh
Q 012442 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209 (463)
Q Consensus 172 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 209 (463)
...+.. +-|...|..+..+|.++ |.+..|+++|.+.
T Consensus 587 sALR~d-PkD~n~W~gLGeAY~~s-Gry~~AlKvF~kA 622 (1238)
T KOG1127|consen 587 SALRTD-PKDYNLWLGLGEAYPES-GRYSHALKVFTKA 622 (1238)
T ss_pred HHhcCC-chhHHHHHHHHHHHHhc-CceehHHHhhhhh
Confidence 444332 23344444444444444 4444444444443
No 137
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.34 E-value=0.00053 Score=65.42 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=64.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 012442 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303 (463)
Q Consensus 224 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 303 (463)
+.+.....+|.+|+.+++.+..+ .. -..-|..+...|...|+++.|.++|.+.- .++-.|.+|.+.|
T Consensus 739 ieaai~akew~kai~ildniqdq-k~---~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ-KT---ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh-cc---ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccc
Confidence 34445566677777777766654 21 12245666677777777777777775321 2445666777777
Q ss_pred CHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350 (463)
Q Consensus 304 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (463)
++++|.++-.+. .|.......|-+-..-+-+.|++.+|.++|-.
T Consensus 806 kw~da~kla~e~---~~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 806 KWEDAFKLAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred cHHHHHHHHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 777776665543 33334444555555555556666666665533
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.31 E-value=2.7e-05 Score=71.19 Aligned_cols=127 Identities=17% Similarity=0.144 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 012442 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226 (463)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 226 (463)
-.....++..+...++++.|+.+|+++.+. .|+. ...+...+... ++-.+|.+++++..+..+.+...+......
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~-~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLM-NEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhc-CcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 334456667777778888888888888865 3543 33466666666 777788888777776666677777777788
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 012442 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281 (463)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 281 (463)
+.+.++++.|+++.+++.+. .|++..+|..|..+|.+.|+++.|+..+..+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888888654 77777788888888888888888888887664
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.28 E-value=1.6e-06 Score=49.51 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=26.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccC
Q 012442 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429 (463)
Q Consensus 397 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 429 (463)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888776
No 140
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.26 E-value=0.00098 Score=63.72 Aligned_cols=167 Identities=13% Similarity=0.143 Sum_probs=90.9
Q ss_pred HHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCH
Q 012442 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270 (463)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 270 (463)
+.... ..|.+|+.+++.+.... .-..-|..+.+.|+..|+++.|.++|.+.- .++--|..|.+.|+|
T Consensus 741 aai~a-kew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 741 AAIGA-KEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD-----------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHhhh-hhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc-----------hhHHHHHHHhccccH
Confidence 33444 66777777777665411 122345566777777777777777775431 234446677777777
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350 (463)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (463)
+.|.++-++.... ......|..-..-.-+.|++.+|.++|-.+ -.|+. -|.+|-+.|..+..+++.++
T Consensus 808 ~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti-----~~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITI-----GEPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEc-----cCchH-----HHHHHHhhCcchHHHHHHHH
Confidence 7777776655432 233444544445555666666666665442 12332 24556666666666665554
Q ss_pred HHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 012442 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNY 385 (463)
Q Consensus 351 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 385 (463)
-... .-..|...+..-|-..|++..|..-|-+
T Consensus 876 ~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 876 HHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hChh---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 3211 1123344445555555666655555433
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=3e-06 Score=48.33 Aligned_cols=33 Identities=36% Similarity=0.625 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 012442 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359 (463)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (463)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566777777777777777777777777666665
No 142
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.19 E-value=2.4e-05 Score=71.87 Aligned_cols=117 Identities=16% Similarity=0.163 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 012442 327 TYNMIFECLIKNKRVHEVEKFFHEMIKN--EWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG 404 (463)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 404 (463)
....++..+....+++++..++.+.... ....-..|..++|+.|...|..+.+..+++.=...|+.||..++|.|++.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3333444444444444444444444432 11112223334455555555555555544444444555555555555555
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHh
Q 012442 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443 (463)
Q Consensus 405 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 443 (463)
+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 555555555555544444444444444444444444443
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.19 E-value=3.1e-06 Score=47.88 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCcc
Q 012442 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 428 (463)
Q Consensus 396 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 428 (463)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 366677777777777777777777777666655
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.19 E-value=0.00022 Score=56.31 Aligned_cols=124 Identities=17% Similarity=0.199 Sum_probs=60.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH--HHHHHHHH
Q 012442 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV--VAVNSLLS 190 (463)
Q Consensus 116 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~ 190 (463)
|..++..+ ..++...+...++.+....+.+ ....-.+...+...|++++|...|+........++. .....|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444444 3566666666666666555433 223333445566666666666666666654311111 12222344
Q ss_pred HHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012442 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242 (463)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 242 (463)
.+... |++++|+..++.... .......+....+.|.+.|++++|...|+.
T Consensus 94 ~~~~~-~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQ-GQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHc-CCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444 555555555544322 122333444455555555555555555543
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=9.5e-05 Score=67.71 Aligned_cols=127 Identities=14% Similarity=0.157 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012442 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (463)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 192 (463)
-..-..|+..+...++++.|..+|+++.+..+ + ....+++.+...++-.+|.+++++..+.. +.+......-...+
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~p-e--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDP-E--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCC-c--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34556677788888999999999999998863 3 45568888888999999999999998653 44666666666777
Q ss_pred HccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012442 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244 (463)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (463)
.+. ++++.|+.+.+++.+-.|.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 245 l~k-~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSK-KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred Hhc-CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 788 999999999999998777788899999999999999999999998775
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=4.7e-06 Score=47.12 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc
Q 012442 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180 (463)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 180 (463)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 357777777777777777777777777777665
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.13 E-value=4.1e-05 Score=70.33 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=93.5
Q ss_pred HHHHhhc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 012442 205 FLNRVKK----IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVM 280 (463)
Q Consensus 205 ~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m 280 (463)
++..|.+ +.+-+......+++.+....+++.+..++..........---..|..++++.|...|..++++.+++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4555443 456677777788888888888888888877776531111001235668888888888888888888888
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 012442 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338 (463)
Q Consensus 281 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 338 (463)
...|+-||..+++.||+.+.+.|++..|.++...||..... .+..|+..-+.+|.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~-~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEF-DNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHHh
Confidence 88888888888888888888888888888888886554443 4555555555555544
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.08 E-value=0.00037 Score=55.08 Aligned_cols=21 Identities=19% Similarity=0.018 Sum_probs=9.0
Q ss_pred HHHHccCCHHHHHHHHHHHhh
Q 012442 262 ITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~m~~ 282 (463)
..+...|++++|...|+....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 333444444444444444444
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.00 E-value=9.7e-06 Score=44.64 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=20.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 012442 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRI 426 (463)
Q Consensus 397 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 426 (463)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566666667677777777777666666653
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.00 E-value=0.00026 Score=53.68 Aligned_cols=94 Identities=20% Similarity=0.157 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCcHHHHHHHHHHhhcCC---CCCHHHHHH
Q 012442 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----VVAVNSLLSAICRQENQTSRALEFLNRVKKIV---DPDGDSFAI 222 (463)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 222 (463)
+..+...+.+.|++++|.+.|+.+.... |+ ...+..+...+.+. |+++.|...|+.+.... +....++..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQ-GKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3444444455555555555555554321 11 22333344444444 55555555555544311 112334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh
Q 012442 223 LLEGWEKEGNVEEANKTFGEMVER 246 (463)
Q Consensus 223 l~~~~~~~g~~~~a~~~~~~~~~~ 246 (463)
+..++.+.|+.++|.+.++++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555555543
No 151
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.98 E-value=0.012 Score=53.30 Aligned_cols=117 Identities=12% Similarity=0.129 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhH-HHHHH
Q 012442 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNE-WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASA-NELLV 403 (463)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~li~ 403 (463)
..|..++....+..-++.|..+|.++.+.| +.++...+++++..++ .|+...|.++|+--..+ .||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456777777777777888888888888887 6677888888888776 46778888888765542 2333333 44666
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCccC--HHHHHHHHHHHHHhcch
Q 012442 404 GLRNLGRLSDVRRFAEEMLNRRILIY--EVTMHKLKKAFYNESRS 446 (463)
Q Consensus 404 ~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~ 446 (463)
-+..-++-+.|..+|+....+ +..+ ...|..+|..=..-|+.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSL 518 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcch
Confidence 677788888888888855433 2222 46788888877777777
No 152
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.95 E-value=0.00015 Score=52.20 Aligned_cols=70 Identities=16% Similarity=0.288 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHcCC--------CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHh
Q 012442 374 DEPEIAIEIWNYILENGI-LPLEASANELLVGLRNLG--------RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443 (463)
Q Consensus 374 g~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 443 (463)
+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..||+.++..+.+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHh
Confidence 444444444444444444 444444444444333221 2334566777777777777777777777776653
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.95 E-value=0.00042 Score=52.55 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=39.2
Q ss_pred HHHHHHccCCcHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHH
Q 012442 188 LLSAICRQENQTSRALEFLNRVKKIVDP---DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264 (463)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~ 264 (463)
+...+.+. |++++|.+.|+.+....+. ....+..+..++.+.|++++|.+.|+.+.....-.+....++..+...+
T Consensus 8 ~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 8 AALLVLKA-GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 33334444 4445555544444332111 1233344444444445555555555444432111110122344444444
Q ss_pred HccCCHHHHHHHHHHHhhC
Q 012442 265 IRGKQVDEALKFLRVMKGE 283 (463)
Q Consensus 265 ~~~~~~~~a~~~~~~m~~~ 283 (463)
.+.|++++|...++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 4444555555555444443
No 154
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.92 E-value=0.0051 Score=53.09 Aligned_cols=183 Identities=9% Similarity=0.057 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 012442 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPT---FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188 (463)
Q Consensus 112 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 188 (463)
+...+-.....+...|++++|.+.|+.+....+-+... .-.++.++.+.+++++|...+++..+....-....|...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 44444445555667788888888888888776644333 245667788888888888888888765322222233333
Q ss_pred HHHHHcc----------------CCcHH---HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 012442 189 LSAICRQ----------------ENQTS---RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249 (463)
Q Consensus 189 l~~~~~~----------------~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 249 (463)
+.+.+.. ..|.. .|+..|+. ++.-|=...-..+|.+.+..+..+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~--------------li~~yP~S~ya~~A~~rl~~l~~~--- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK--------------LVRGYPNSQYTTDATKRLVFLKDR--- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH--------------HHHHCcCChhHHHHHHHHHHHHHH---
Confidence 3333210 01222 22233333 333333334455555555555443
Q ss_pred CCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN--CFPTLKFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
=...--.+..-|.+.|.+..|..-++.+.+.- .+........++.+|.+.|..+.|..+...
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 11122245566778888888888888887642 222345566777888888888888777665
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.92 E-value=0.00024 Score=51.07 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=36.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 012442 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233 (463)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 233 (463)
...+...|++++|...+++..+.. +.+...+..+...+... +++++|.+.++......+.+..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 333444444444444444443321 11223333333344444 4444444444444332233334444444444445555
Q ss_pred HHHHHHHHHH
Q 012442 234 EEANKTFGEM 243 (463)
Q Consensus 234 ~~a~~~~~~~ 243 (463)
++|...+...
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 5555544444
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.91 E-value=0.00033 Score=62.04 Aligned_cols=129 Identities=12% Similarity=0.086 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012442 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG-AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 193 (463)
+|..++...-+.+..+.|..+|.+..+.+..+..+|-.....-.+ .++.+.|.++|+...+. +..+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 444555555555555555555555543333333333333333222 33444455555554433 2334444555555555
Q ss_pred ccCCcHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012442 194 RQENQTSRALEFLNRVKKIVDPDG---DSFAILLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 194 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
.. |+.+.|..+|++....+.++. ..|...+..=.+.|+++.+.++.+.+.+
T Consensus 82 ~~-~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KL-NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HT-T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred Hh-CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55 555555555555444322222 3455555555555555555555554443
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.89 E-value=0.00049 Score=60.91 Aligned_cols=144 Identities=10% Similarity=0.108 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012442 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369 (463)
Q Consensus 290 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 369 (463)
.+|..++...-+.+..+.|..+|.++.....+...+....+++. |...++.+.|.++|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 46888888888888899999999996544344455555555554 23346677799999998876 46778888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 012442 370 LLDADEPEIAIEIWNYILENGILPLE---ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438 (463)
Q Consensus 370 ~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 438 (463)
+.+.|+.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+++.+. .|+...+..++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 88999999999999998864 33332 48888888888889999999998888875 345444444443
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.89 E-value=1.4e-05 Score=43.95 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 012442 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNE 355 (463)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 355 (463)
+|+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34555555555555555555555554443
No 159
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.87 E-value=0.001 Score=51.75 Aligned_cols=102 Identities=8% Similarity=-0.065 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012442 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295 (463)
Q Consensus 216 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 295 (463)
+....-.+...+...|++++|.++|+.+..- .|.+..-|..|..++-..|++++|+..|....... +-|...+-.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~---Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~a 109 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY---DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 3344555666677888888888888888654 77677788888888888888888888888887776 3567778888
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHhcCC
Q 012442 296 LDILVKLNDSTHAVQLWDIMMVFHGA 321 (463)
Q Consensus 296 l~~~~~~g~~~~a~~~~~~~~~~~~~ 321 (463)
..++...|+.+.|.+.|+.++...+-
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 88888888888888888876555543
No 160
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.87 E-value=0.00025 Score=51.07 Aligned_cols=76 Identities=12% Similarity=0.179 Sum_probs=45.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCC-CCchHhhHHHHHHHHHccC--------CHHHHHHHHHHHhhCCCCCCHHHHH
Q 012442 223 LLEGWEKEGNVEEANKTFGEMVERFEW-NPEHVLAYETFLITLIRGK--------QVDEALKFLRVMKGENCFPTLKFFS 293 (463)
Q Consensus 223 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~~~ 293 (463)
.|.-+...+++.....+|+.+++. |+ .| ++.+|+.++.+.++.. +.-+.+.+|..|...+++|+..||+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN-~i~lP-sv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRN-GITLP-SVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhc-CCCCC-cHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 344455556666666666666663 66 55 5666666666665542 2344556666666666666666666
Q ss_pred HHHHHHH
Q 012442 294 NALDILV 300 (463)
Q Consensus 294 ~ll~~~~ 300 (463)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 6665544
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=0.00028 Score=50.69 Aligned_cols=91 Identities=19% Similarity=0.159 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 012442 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL 299 (463)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 299 (463)
+..+...+...|++++|.+.+++..+. .|.+...+..+...+...+++++|.+.|+...... +.+..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 334445555555666666665555432 33333445555555555566666666665555443 22334555555555
Q ss_pred HHcCCHhHHHHHHHH
Q 012442 300 VKLNDSTHAVQLWDI 314 (463)
Q Consensus 300 ~~~g~~~~a~~~~~~ 314 (463)
...|+.+.|...+..
T Consensus 79 ~~~~~~~~a~~~~~~ 93 (100)
T cd00189 79 YKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHhHHHHHHHHHH
Confidence 666666666666555
No 162
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.82 E-value=0.022 Score=51.12 Aligned_cols=125 Identities=16% Similarity=0.161 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012442 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370 (463)
Q Consensus 291 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 370 (463)
+.+..|.-+...|+...|.++-.+ ..+ |+...|..-+.+++..++|++-.++... + -.+.-|..++.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 455567777888999888888766 223 7888999999999999999887776432 2 2457899999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHH
Q 012442 371 LDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN 442 (463)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 442 (463)
.+.|+..+|..+..+ + .+..-+..|.+.|++.+|.+.--+.+ |...+..+.+.|-.
T Consensus 248 ~~~~~~~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~ 303 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPG 303 (319)
T ss_pred HHCCCHHHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCC
Confidence 999999999988776 2 33667788999999999987655442 33445544444433
No 163
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.81 E-value=0.00046 Score=56.33 Aligned_cols=107 Identities=10% Similarity=0.014 Sum_probs=65.6
Q ss_pred CCCCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCh
Q 012442 321 AFPDSLTYNMIFECLIKN-----KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395 (463)
Q Consensus 321 ~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 395 (463)
-..+..+|..+++.|.+. |..+=....+..|.+.|+.-|..+|+.|++.+=+.. +- -..+|+.+--
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~-fv-p~n~fQ~~F~------- 113 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGK-FV-PRNFFQAEFM------- 113 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCC-cc-cccHHHHHhc-------
Confidence 356778888888888754 677777788888888888888888888888876522 11 0111111100
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 396 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
..-.+.+-|++++++|...|+.||..|+..|++.|.+.+..
T Consensus 114 ----------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 ----------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred ----------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 01123344566666666666666666666666666555543
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.80 E-value=0.00088 Score=61.59 Aligned_cols=89 Identities=13% Similarity=-0.017 Sum_probs=46.8
Q ss_pred HHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCH
Q 012442 297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP 376 (463)
Q Consensus 297 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 376 (463)
..+...|+++.|...|++++... +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 33445555555555555543322 1234445555555555555555555555555543 33445555555555555555
Q ss_pred HHHHHHHHHHHH
Q 012442 377 EIAIEIWNYILE 388 (463)
Q Consensus 377 ~~a~~~~~~~~~ 388 (463)
++|...|++..+
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.75 E-value=0.0013 Score=51.16 Aligned_cols=89 Identities=13% Similarity=0.006 Sum_probs=50.8
Q ss_pred HHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCC
Q 012442 190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269 (463)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~ 269 (463)
..+... |++++|..+|+.+..-.+-+..-|..|.-++-..|++++|+..|..... +.|+|...+-.+..++...|+
T Consensus 43 ~~ly~~-G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 43 MQLMEV-KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHC-CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHHHHcCC
Confidence 334444 6666666666655554445555555566666666666666666665533 245555566666666666666
Q ss_pred HHHHHHHHHHHhh
Q 012442 270 VDEALKFLRVMKG 282 (463)
Q Consensus 270 ~~~a~~~~~~m~~ 282 (463)
.+.|.+.|+....
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655443
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.74 E-value=0.011 Score=52.59 Aligned_cols=169 Identities=15% Similarity=0.149 Sum_probs=84.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcC----CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012442 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDG----VL--SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189 (463)
Q Consensus 116 ~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 189 (463)
|......|-..|++++|.+.|....... -+ -...|.....+|.+. ++++|.+.+++..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~--------------- 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI--------------- 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH---------------
Confidence 3344455666677777766666543211 00 122333333333333 5555554444443
Q ss_pred HHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhcCC--CC-chHhhHHHHHHHHH
Q 012442 190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE-GNVEEANKTFGEMVERFEW--NP-EHVLAYETFLITLI 265 (463)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~--~p-~~~~~~~~li~~~~ 265 (463)
..|... |++..|-.++.. +...|... |++++|.+.|++..+-+.. .+ .-...+..+...+.
T Consensus 102 ~~y~~~-G~~~~aA~~~~~--------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 102 EIYREA-GRFSQAAKCLKE--------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHC-T-HHHHHHHHHH--------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHhc-CcHHHHHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 345555 666666555544 34455555 7777777777766542111 11 01234556667777
Q ss_pred ccCCHHHHHHHHHHHhhCCCC-----CCH-HHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 266 RGKQVDEALKFLRVMKGENCF-----PTL-KFFSNALDILVKLNDSTHAVQLWDIM 315 (463)
Q Consensus 266 ~~~~~~~a~~~~~~m~~~~~~-----~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 315 (463)
+.|++++|.++|++....-.. .+. ..|-..+-++...||...|.+.++..
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 778888888888777654321 111 12233344556677777777777774
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.74 E-value=7.4e-05 Score=52.65 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=34.2
Q ss_pred CCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 012442 339 KRVHEVEKFFHEMIKNEWQ-PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRF 417 (463)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 417 (463)
|+++.|+.+++++.+..-. ++...+..+..+|.+.|++++|..++++ .+.+. .+......+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555544210 1222333345555555555555555554 21111 1112222334455555555555555
Q ss_pred HHH
Q 012442 418 AEE 420 (463)
Q Consensus 418 ~~~ 420 (463)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.71 E-value=0.00018 Score=48.24 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=50.2
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012442 124 GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189 (463)
Q Consensus 124 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 189 (463)
...|++++|+++|+.+....+.+...+..+..+|.+.|++++|.++++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 46788888888888888888878888888888888888888888888888875 56655555544
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.68 E-value=0.0018 Score=59.57 Aligned_cols=84 Identities=13% Similarity=-0.018 Sum_probs=39.9
Q ss_pred cCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 012442 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171 (463)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (463)
.++++.|+.+|+.+.+..+.+...|..+..+|.+.|++++|+..++.+....+.+...|..+..+|...|++++|+..|+
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHh
Q 012442 172 VMSM 175 (463)
Q Consensus 172 ~m~~ 175 (463)
+..+
T Consensus 95 ~al~ 98 (356)
T PLN03088 95 KGAS 98 (356)
T ss_pred HHHH
Confidence 4443
No 170
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.65 E-value=0.0013 Score=58.68 Aligned_cols=133 Identities=12% Similarity=0.050 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHH----hhCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHH----HhcCCCCCH
Q 012442 255 LAYETFLITLIRGKQVDEALKFLRVM----KGENCFP-TLKFFSNALDILVKLNDSTHAVQLWDIMM----VFHGAFPDS 325 (463)
Q Consensus 255 ~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 325 (463)
.+|..|.+.|.-.|+++.|+...+.- .+.|-.. ....+..+..++.-.|+++.|.+.|+... ....-....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 46777777777788888888766543 2233221 23467778888888888888888887642 111112344
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 012442 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKN-----EWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387 (463)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 387 (463)
....+|...|.-...+++|+.++.+-+.. ...-....+.+|..+|...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56667777777777888888887664321 112245678888888888888888887766544
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.0048 Score=50.33 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 012442 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD--VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226 (463)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 226 (463)
.+..+...+...|++++|...|++..+.+..+. ...+..+...+.+. |++++|...+++..+..+.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASN-GEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 334444444444444444444444443211111 12333333444444 444444444444433222333333344444
Q ss_pred HHhcCC
Q 012442 227 WEKEGN 232 (463)
Q Consensus 227 ~~~~g~ 232 (463)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 444333
No 172
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.0011 Score=56.83 Aligned_cols=101 Identities=18% Similarity=0.083 Sum_probs=74.7
Q ss_pred HHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHH
Q 012442 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377 (463)
Q Consensus 298 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 377 (463)
-..+.+++.+|+..|.+.+... +.|.+.|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 3567788888888888865421 2456677777788888888888888888887765 445677888888888888888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHH
Q 012442 378 IAIEIWNYILENGILPLEASANELLV 403 (463)
Q Consensus 378 ~a~~~~~~~~~~~~~p~~~~~~~li~ 403 (463)
+|.+.|++.++ +.|+..+|..=+.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 88888888777 5677666655444
No 173
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.63 E-value=0.0013 Score=53.82 Aligned_cols=105 Identities=15% Similarity=0.225 Sum_probs=61.6
Q ss_pred CcCHHHHHHHHHHHHcc----CCcHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch
Q 012442 179 EQDVVAVNSLLSAICRQ----ENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253 (463)
Q Consensus 179 ~~~~~~~~~ll~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 253 (463)
..+..+|..++..|.+. .|..+-....+..|.+ |+..|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 56666777777666543 1555555555666666 666666666666666543 2211 11111111
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 012442 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304 (463)
Q Consensus 254 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 304 (463)
.. -.-.+-+-|++++++|...|+.||..|+..+++.+++.+.
T Consensus 112 -------F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 -------FM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -------hc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 0113455677888888888888888888888888776664
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.63 E-value=0.011 Score=47.02 Aligned_cols=125 Identities=12% Similarity=0.059 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC---CCCCHHHH
Q 012442 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE---WQPTPLNC 363 (463)
Q Consensus 287 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 363 (463)
|+...-..|..+..+.|+..+|...|++. ...-+..|......+.++....+++..|...++++.+.. -.| .+.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qa-lsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p--d~~ 163 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQA-LSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP--DGH 163 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHH-hccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC--Cch
Confidence 44444444445555555555555555542 212223344444444455555555555555555554432 111 122
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHH
Q 012442 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416 (463)
Q Consensus 364 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 416 (463)
..+...|...|...+|+.-|+..... -|+...-......+.+.|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 33444555555555555555555542 2333322223334445554444443
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.61 E-value=0.0021 Score=52.28 Aligned_cols=64 Identities=9% Similarity=-0.052 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 012442 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP-DSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354 (463)
Q Consensus 291 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 354 (463)
.+..+...+...|++++|...|+..+....-.+ ...+|..+...+...|++++|.+.+++..+.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444444555555555555555432211111 1234455555555555555555555555543
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.61 E-value=0.0002 Score=50.48 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=35.3
Q ss_pred CcHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHH
Q 012442 197 NQTSRALEFLNRVKKIVD--PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~ 274 (463)
|+++.|+.+++++....+ ++...+..+..+|.+.|++++|..+++. .+ ..+.+......+..++.+.|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 455555555555544222 1233334455555555555555555544 11 11222233334455555555555555
Q ss_pred HHHHH
Q 012442 275 KFLRV 279 (463)
Q Consensus 275 ~~~~~ 279 (463)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55543
No 177
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.60 E-value=0.039 Score=47.66 Aligned_cols=55 Identities=7% Similarity=-0.000 Sum_probs=25.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 012442 366 AITMLLDADEPEIAIEIWNYILEN--GILPLEASANELLVGLRNLGRLSDVRRFAEE 420 (463)
Q Consensus 366 li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 420 (463)
+..-|.+.|.+..|..=++.+.+. +.+........++.+|...|..++|..+...
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 334455555555555555555542 1111223334444555555555555554443
No 178
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.025 Score=50.86 Aligned_cols=163 Identities=13% Similarity=0.080 Sum_probs=87.2
Q ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHH--HHHccCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 012442 218 DSFAIL-LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI--TLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294 (463)
Q Consensus 218 ~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 294 (463)
.+|..+ ..++.-.|++++|.++-....+. .+.+. +..+++ ++-..++.+.+...|.+-+..+ |+...-..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl---d~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~ 241 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL---DATNA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKS 241 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc---ccchh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHh
Confidence 444443 44566778888888877777553 44333 333333 3444577888888888777665 54432222
Q ss_pred H-------------HHHHHHcCCHhHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 012442 295 A-------------LDILVKLNDSTHAVQLWDIMMVFH--GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359 (463)
Q Consensus 295 l-------------l~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (463)
+ .+-..+.|.+..|.+.|.+.+... ...++...|.....+..+.|+..+|+.--++....+ ..-
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~sy 320 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSY 320 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHH
Confidence 1 122345666666766666643211 123344455555555566666666666666665432 111
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 360 PLNCATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
...|..-..++...+++++|.+-++...+
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222222334444566666666666554
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.58 E-value=0.007 Score=49.38 Aligned_cols=86 Identities=8% Similarity=0.046 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012442 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD-SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370 (463)
Q Consensus 292 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 370 (463)
+..+...+...|++++|...|++......-.++ ...+..+...+.+.|++++|...+.+..+.. +-+...+..+..+|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 333344444444444444444443221111111 2344444445555555555555555555432 22344444444445
Q ss_pred hCCCCHHH
Q 012442 371 LDADEPEI 378 (463)
Q Consensus 371 ~~~g~~~~ 378 (463)
...|+...
T Consensus 117 ~~~g~~~~ 124 (172)
T PRK02603 117 HKRGEKAE 124 (172)
T ss_pred HHcCChHh
Confidence 44444333
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.58 E-value=0.0067 Score=58.44 Aligned_cols=146 Identities=10% Similarity=0.082 Sum_probs=82.4
Q ss_pred CCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 012442 212 IVDPDGDSFAILLEGWEKEG-----NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286 (463)
Q Consensus 212 ~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 286 (463)
..+.|...|...+.+..... +.+.|..+|++..+. .|++...|..+..++.....+ .
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~---------------~ 393 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQ---------------Q 393 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhc---------------C
Confidence 45667777777777654322 366788888888665 776666665554433221111 1
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 012442 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366 (463)
Q Consensus 287 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (463)
+.. ..++..+.+.............+...|.++.-.+...|++++|...++++.+.+ |+...|..+
T Consensus 394 ~~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~l 459 (517)
T PRK10153 394 PLD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLL 459 (517)
T ss_pred Ccc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHH
Confidence 100 011122222222211111122334555555555555677777777777777764 467777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHc
Q 012442 367 ITMLLDADEPEIAIEIWNYILEN 389 (463)
Q Consensus 367 i~~~~~~g~~~~a~~~~~~~~~~ 389 (463)
...+...|+.++|.+.+++....
T Consensus 460 G~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 460 GKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Confidence 77777777777777777777763
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.58 E-value=0.00029 Score=47.25 Aligned_cols=49 Identities=16% Similarity=0.320 Sum_probs=22.6
Q ss_pred CcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012442 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
|++++|+++|+.+....+-+...+..+..+|.+.|++++|.++++.+..
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444443344444444444444444444444444444443
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.55 E-value=0.0084 Score=57.80 Aligned_cols=143 Identities=10% Similarity=-0.020 Sum_probs=91.3
Q ss_pred CCcCHHHHHHHHHHHHcc----CCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHH
Q 012442 178 VEQDVVAVNSLLSAICRQ----ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG--------NVEEANKTFGEMVE 245 (463)
Q Consensus 178 ~~~~~~~~~~ll~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~ 245 (463)
.+.|...|...+.+.... .++.+.|..+|++..+..+-+...|..+..++.... ++..+.+.......
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 356778888888775432 134778888888888765666666666555443321 12233333333322
Q ss_pred hcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCC
Q 012442 246 RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323 (463)
Q Consensus 246 ~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 323 (463)
. ...|.+...|..+.......|++++|...+++..+.+ |+...|..+...+...|+.++|...+++.+......|
T Consensus 413 l-~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 L-PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred c-ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 1 2233345567777666666788888888888887765 5677777888888888888888888877655443333
No 183
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.54 E-value=0.059 Score=48.21 Aligned_cols=314 Identities=14% Similarity=0.045 Sum_probs=200.9
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCHHHHHHHHH--HHHhcCChHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGK--NGRFEQMWNAVRVMKEDGVLSLPTFASIFD--SYCGAGKYDE 165 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~li~--~~~~~g~~~~ 165 (463)
.....+..+.++|..-++ -.-|..|-.++.. .|+-..|.++-.+....-..|.+....++. +-.-.|+++.
T Consensus 64 ~iw~sP~t~~Ryfr~rKR-----drgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~ 138 (531)
T COG3898 64 SIWESPYTARRYFRERKR-----DRGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYED 138 (531)
T ss_pred HHHhCcHHHHHHHHHHHh-----hhHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHH
Confidence 445678888888886543 2356666666554 477788877776544322234443444443 3445699999
Q ss_pred HHHHHHHHHhCCCCcCHHH--HHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012442 166 AVMSFDVMSMHGVEQDVVA--VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243 (463)
Q Consensus 166 A~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 243 (463)
|.+-|+.|.. .|.... ...|.-.--+. |+.+.|..+-+..-..-+.-...+...+...+..|+|+.|+++++.-
T Consensus 139 Ar~kfeAMl~---dPEtRllGLRgLyleAqr~-GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 139 ARKKFEAMLD---DPETRLLGLRGLYLEAQRL-GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHHHHhc---ChHHHHHhHHHHHHHHHhc-ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 9999999985 333222 12222222345 99999999988877766666788899999999999999999999987
Q ss_pred HHhcCCCCchHh--hHHHHHHHHHc---cCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 012442 244 VERFEWNPEHVL--AYETFLITLIR---GKQVDEALKFLRVMKGENCFPTLK-FFSNALDILVKLNDSTHAVQLWDIMMV 317 (463)
Q Consensus 244 ~~~~~~~p~~~~--~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 317 (463)
....-+.+ +.. .--.|+.+-.. ..+...|...-.+..+ +.||.. .-.....++.+.|+..++-.+++.+.+
T Consensus 215 ~~~~vie~-~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 215 RAAKVIEK-DVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHhhch-hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 77544444 331 12222222221 2456666666555544 446543 233456778999999999999998655
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCh
Q 012442 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN-EW-QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLE 395 (463)
Q Consensus 318 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 395 (463)
..|....+... .+.+.|+ .+..-+++.... .+ +.|......+..+-...|++..|..--+.... ..|..
T Consensus 292 ---~ePHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pre 362 (531)
T COG3898 292 ---AEPHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRE 362 (531)
T ss_pred ---cCCChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchh
Confidence 23444333222 2345554 344434333321 12 44566777788888889999988887776665 56777
Q ss_pred hhHHHHHHHH-HcCCCHHHHHHHHHHHHHC
Q 012442 396 ASANELLVGL-RNLGRLSDVRRFAEEMLNR 424 (463)
Q Consensus 396 ~~~~~li~~~-~~~g~~~~a~~~~~~m~~~ 424 (463)
..|-.|.+.- ...|+-.++..++-+....
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8888887754 4559999999998887654
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.52 E-value=0.0062 Score=54.19 Aligned_cols=34 Identities=9% Similarity=0.206 Sum_probs=20.3
Q ss_pred CcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012442 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (463)
.+++.|..+|++. ...|-..|++++|.+.|....
T Consensus 29 ~~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 29 PDYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHH
Confidence 3677777776664 345556666766666666553
No 185
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.48 E-value=0.0054 Score=49.82 Aligned_cols=63 Identities=6% Similarity=-0.092 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 012442 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL---SLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175 (463)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (463)
...|..+...+...|++++|+..|+........ ...+|..+...+...|++++|++.+++...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444555555555555555554433221 123444445555555555555555555443
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.48 E-value=0.00053 Score=45.48 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=43.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012442 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176 (463)
Q Consensus 119 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (463)
+...+.+.|++++|...|+.+.+..+.+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456677788888888888887777667777888888888888888888888877654
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.005 Score=51.66 Aligned_cols=154 Identities=11% Similarity=0.061 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012442 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242 (463)
Q Consensus 164 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 242 (463)
+..+++|++=.. .+.+.+++.+... +.+.-....+.++.+ ..+.++.....|++.-.+.|+.+.|...|+.
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~-kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGM-KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcc-hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 555556555432 3455666666666 777777777777766 4466777777788888888888888888886
Q ss_pred HHHhcCCCCc---hHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhc
Q 012442 243 MVERFEWNPE---HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH 319 (463)
Q Consensus 243 ~~~~~~~~p~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 319 (463)
..+..+..-. +..........|.-.+++..|...|.+....+ .-|....|.-.-+..-.|+..+|.+.++.+..
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~-- 314 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ-- 314 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 6654221110 11122223344556677888888887777665 23445555444445556788888888887533
Q ss_pred CCCCCHHHHH
Q 012442 320 GAFPDSLTYN 329 (463)
Q Consensus 320 ~~~~~~~~~~ 329 (463)
..|...+-+
T Consensus 315 -~~P~~~l~e 323 (366)
T KOG2796|consen 315 -QDPRHYLHE 323 (366)
T ss_pred -cCCccchhh
Confidence 334444433
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.46 E-value=0.0011 Score=43.94 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=27.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 012442 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (463)
..+.+.|++++|.+.|+++.+. .|.+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555433 344555555555555555555555555555544
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.45 E-value=0.00097 Score=44.81 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccC-CHHHHHHHHHHHhh
Q 012442 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK-QVDEALKFLRVMKG 282 (463)
Q Consensus 216 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~ 282 (463)
+..+|..+...+...|++++|+..|++..+. .|++...|..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556777777777777777777777777664 6666777777777777777 57777777776654
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.42 E-value=0.012 Score=44.10 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=23.0
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 012442 122 VLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMS 174 (463)
Q Consensus 122 ~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 174 (463)
++-..|+.++|+.+|+.....|... ...+-.+...+...|++++|+.+|++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444321 2233334444444444444444444444
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.42 E-value=0.00086 Score=45.06 Aligned_cols=64 Identities=17% Similarity=0.246 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 012442 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG-KYDEAVMSFDVMSM 175 (463)
Q Consensus 112 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 175 (463)
++..|..+...+...|++++|+..|++..+.++.+...|..+..++.+.| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56778888888888899999999998888888778888888888888888 68888888888765
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.35 E-value=0.07 Score=44.80 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=29.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 012442 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283 (463)
Q Consensus 224 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 283 (463)
...+...|++++|.+.|+.+...+...|--..+.-.++.++.+.|++++|...++++.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334445566666666666665543322322334445555555555666655555555443
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.31 E-value=0.016 Score=43.45 Aligned_cols=100 Identities=13% Similarity=0.040 Sum_probs=75.3
Q ss_pred hccCCchHHHHHHHHhcC-CCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCCh
Q 012442 90 LSYDSPSSAVDFFRWAGR-GQRLS--PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL---SLPTFASIFDSYCGAGKY 163 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~-~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~ 163 (463)
...|+.++|+.+|+.+.. +.... ...+-.+.+.+...|++++|+.+|++.....+. +......+..++...|+.
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~ 91 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRP 91 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCH
Confidence 567999999999998877 43332 456777888999999999999999998876543 444445556678899999
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012442 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193 (463)
Q Consensus 164 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 193 (463)
++|++.+-.... ++...|.--|..|.
T Consensus 92 ~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 92 KEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 999998877663 44446666666654
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.30 E-value=0.0047 Score=55.25 Aligned_cols=134 Identities=14% Similarity=0.075 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHH---HhcCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH----CC-CCCCH
Q 012442 290 KFFSNALDILVKLNDSTHAVQLWDIMM---VFHGAF-PDSLTYNMIFECLIKNKRVHEVEKFFHEMIK----NE-WQPTP 360 (463)
Q Consensus 290 ~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~ 360 (463)
..|..|-..|.-.|+++.|+...+.-+ +..|-+ ..-..+..|..++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456677777778899999988766422 222221 1234577788888889999999998887543 23 12344
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----c-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012442 361 LNCATAITMLLDADEPEIAIEIWNYILE----N-GILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 361 ~~~~~li~~~~~~g~~~~a~~~~~~~~~----~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
.+..+|.++|.-..++++|+.++.+-.. . +..-....+.+|..+|...|..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5666788888888899999988875432 1 1223456888999999999999999988776554
No 195
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.19 Score=48.55 Aligned_cols=312 Identities=15% Similarity=0.045 Sum_probs=159.7
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-CC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 012442 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED-GV---------LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV 178 (463)
Q Consensus 109 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 178 (463)
..|.+..|..+.......-.++.|...|-+...- |+ .+...-.+=+.+| -|++++|+++|-+|.++.+
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh
Confidence 4677888988888877777778887777655432 21 1111122222332 3888999998888765432
Q ss_pred CcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------
Q 012442 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE----------- 245 (463)
Q Consensus 179 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------- 245 (463)
-+..+.+. |++-.+.++++.-..+ .+.-...|+.+.+.++....|++|.+.|..-..
T Consensus 766 ---------Aielr~kl-gDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~l 835 (1189)
T KOG2041|consen 766 ---------AIELRKKL-GDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRL 835 (1189)
T ss_pred ---------hHHHHHhh-hhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHH
Confidence 23444455 6665555555442221 112234555555555555555555555443211
Q ss_pred --------hcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 012442 246 --------RFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317 (463)
Q Consensus 246 --------~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 317 (463)
-..-.|++....-.+..++...|.-++|.+.|-+- +. | ...+..|...+++.+|.++-+.. .
T Consensus 836 e~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~avelaq~~-~ 905 (1189)
T KOG2041|consen 836 ELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAVELAQRF-Q 905 (1189)
T ss_pred HhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHHHHHHhc-c
Confidence 01113444445555666666666666666655322 11 1 12345566666777776665542 1
Q ss_pred hcCCCCCHHHH--------------HHHHHHHHHcCCHhHHHHHHHHHHH----CCCCCCHHHHHHHHHH-----H----
Q 012442 318 FHGAFPDSLTY--------------NMIFECLIKNKRVHEVEKFFHEMIK----NEWQPTPLNCATAITM-----L---- 370 (463)
Q Consensus 318 ~~~~~~~~~~~--------------~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~li~~-----~---- 370 (463)
-|.+.+. .--|..+.+.|+.-.|-+++.+|.+ ++.++-..--..++.+ +
T Consensus 906 ----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~i 981 (1189)
T KOG2041|consen 906 ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTI 981 (1189)
T ss_pred ----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222221 1113345556666667777777754 3333322111111111 1
Q ss_pred ------hCCCCHHHHHHHHHHHHH-------cCCCCC--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCccCHHHHH
Q 012442 371 ------LDADEPEIAIEIWNYILE-------NGILPL--EASANELLVGLRNLGRLSDVRRFAEEMLNR-RILIYEVTMH 434 (463)
Q Consensus 371 ------~~~g~~~~a~~~~~~~~~-------~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~ 434 (463)
-..|..++|..+++.-.- .+.-.. ...|..|..-....|.++.|+..--.+.+. ++.|....|.
T Consensus 982 k~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiyS 1061 (1189)
T KOG2041|consen 982 KELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYS 1061 (1189)
T ss_pred HHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHH
Confidence 124556666654443221 001112 234444555566778899888765555543 5667777787
Q ss_pred HHHHHHHHhcch
Q 012442 435 KLKKAFYNESRS 446 (463)
Q Consensus 435 ~ll~~~~~~g~~ 446 (463)
.+.-+.+..+..
T Consensus 1062 llALaaca~raF 1073 (1189)
T KOG2041|consen 1062 LLALAACAVRAF 1073 (1189)
T ss_pred HHHHHHhhhhhh
Confidence 765544444433
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.27 E-value=0.0075 Score=52.52 Aligned_cols=87 Identities=11% Similarity=0.068 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHH
Q 012442 197 NQTSRALEFLNRVKKIVDPD---GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a 273 (463)
|++++|...|+.+.+..+-+ ...+..+...|...|++++|...|+.+.+.+.-.|....++-.+...+...|+.++|
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A 236 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKA 236 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHH
Confidence 55555555555544422222 234444555555555555555555555443222222223333344444444555555
Q ss_pred HHHHHHHhhC
Q 012442 274 LKFLRVMKGE 283 (463)
Q Consensus 274 ~~~~~~m~~~ 283 (463)
..+|+.+.+.
T Consensus 237 ~~~~~~vi~~ 246 (263)
T PRK10803 237 KAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 197
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.27 E-value=0.15 Score=46.76 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=60.4
Q ss_pred CCchHHHHHHHHhcCCCCCCHHHHHHHHHH--HHhCCChHHHHHHHHHHHHc--CC----CCHH---------HHHHHHH
Q 012442 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDV--LGKNGRFEQMWNAVRVMKED--GV----LSLP---------TFASIFD 155 (463)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~--~~----~~~~---------~~~~li~ 155 (463)
.+.+.-........+..+.. .|-.+..+ +-+.+.+++|++.+.....+ +. .+.. .=+..++
T Consensus 59 ~nld~Me~~l~~l~~~~~~s--~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQFGKS--AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred hhHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 44444444444443322322 33333333 45778899999888776655 21 1211 1245678
Q ss_pred HHHhcCChHHHHHHHHHHHhC----CCCcCHHHHHHHHHHHHc
Q 012442 156 SYCGAGKYDEAVMSFDVMSMH----GVEQDVVAVNSLLSAICR 194 (463)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~ll~~~~~ 194 (463)
++...|++.++..+++++... ...-+..+|+.++-.+.+
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 889999999999998888644 344788888886655544
No 198
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0032 Score=53.98 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=65.5
Q ss_pred cCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 012442 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171 (463)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (463)
.+++.+|+..|..+..-.+.|++.|..-..+|.+.|.++.|++-.+.....++....+|..|..+|...|++++|++-|+
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ayk 173 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYK 173 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 46667777777766666667777777777777777777777777766666665556667777777777777777777777
Q ss_pred HHHhCCCCcCHHHHHHHHH
Q 012442 172 VMSMHGVEQDVVAVNSLLS 190 (463)
Q Consensus 172 ~m~~~g~~~~~~~~~~ll~ 190 (463)
+.++. .|+..+|..=|.
T Consensus 174 KaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 174 KALEL--DPDNESYKSNLK 190 (304)
T ss_pred hhhcc--CCCcHHHHHHHH
Confidence 66653 566666554333
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.23 E-value=0.096 Score=43.98 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012442 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL---SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (463)
.+-.....+...|++++|.+.|+.+....+. .....-.++.++.+.|+++.|...++.+.+.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555666788888888888888876552 3556677788888888888888888887754
No 200
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.23 E-value=0.0053 Score=46.55 Aligned_cols=100 Identities=9% Similarity=0.069 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012442 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295 (463)
Q Consensus 216 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 295 (463)
|..++.+++.++++.|+.+...++.+.. .|+.++.... .+. --......|+..+..++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~----------~~~---------~~~~spl~Pt~~lL~AI 58 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKK----------EGD---------YPPSSPLYPTSRLLIAI 58 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCccc----------cCc---------cCCCCCCCCCHHHHHHH
Confidence 4566777777788888887777777655 5665532110 000 11234466888888888
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 012442 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337 (463)
Q Consensus 296 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (463)
+.+|+..|++..|.++.+......+++-+..+|..|++-...
T Consensus 59 v~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 59 VHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 888888888888888888888888888788888888864443
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.016 Score=50.02 Aligned_cols=130 Identities=12% Similarity=0.157 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc--CCcHHHHHHHH
Q 012442 129 FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ--ENQTSRALEFL 206 (463)
Q Consensus 129 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--~~~~~~a~~~~ 206 (463)
++....-++.-...++-|...|-.|...|...|+++.|..-|....+.. .++...+..+..++... +.+..++..+|
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3344444455556667788888888888888888888888888887653 44555555555544433 24567788888
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHH
Q 012442 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263 (463)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~ 263 (463)
+++....+-|+.+...|...+...|++.+|...|+.|.+. .|.+. .+..+|..
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~---lp~~~-~rr~~ie~ 269 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL---LPADD-PRRSLIER 269 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---CCCCC-chHHHHHH
Confidence 8888877778888888888888999999999999988764 44333 45555543
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.029 Score=48.52 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=92.9
Q ss_pred CcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCCCchHh
Q 012442 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG---NVEEANKTFGEMVERFEWNPEHVL 255 (463)
Q Consensus 179 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~ 255 (463)
+-|...|-.|-..|... |+++.|..-|.+..+-.++|...+..+..++.... .-.++.++|+++... +|.|+.
T Consensus 153 P~d~egW~~Lg~~ym~~-~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~---D~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMAL-GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL---DPANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHh-cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc---CCccHH
Confidence 67889999999999999 99999999999998877788888888777765433 356789999999765 888999
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012442 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297 (463)
Q Consensus 256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 297 (463)
+...|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 99999999999999999999999999875 33333444443
No 203
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.14 E-value=0.016 Score=44.04 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=43.3
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCccCHHHHHHHHHHHHHhcch
Q 012442 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLN-RRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 390 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
...|+..+..+++.+|+..|++..|+++++...+ .++..+..+|..|++.+...-+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~ 104 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSK 104 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 3567778888888888888888888888888654 47777788888888877666543
No 204
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.3 Score=47.65 Aligned_cols=319 Identities=13% Similarity=0.115 Sum_probs=154.6
Q ss_pred CCCCCCHHHHHHHHH-------hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh--HHHHHHHH-HHHHcCC
Q 012442 75 TGIIPTPDLVHEVLQ-------LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRF--EQMWNAVR-VMKEDGV 144 (463)
Q Consensus 75 ~~~~~~~~~~~~~l~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a~~~~~-~m~~~~~ 144 (463)
.|++.+..-|..+=. .+.+.+..|+++-.|+......+...|......+.+..+. +++++.++ ++... .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C
Confidence 355555555444311 3457778888888887652222255666777776666322 22333332 22221 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----cCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcC--------
Q 012442 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVE----QDVVAVNSLLSAICRQENQTSRALEFLNRVKKI-------- 212 (463)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-------- 212 (463)
.+..+|..+.......|+.+.|..+++.=...+.. .+..-+..-+.-+.+. |+.+....++-.+.+.
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies-~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIES-GDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHH
Confidence 34445777777777888888888777543322210 1222344445555666 7777666666554431
Q ss_pred ----CCCCHHHHHHHHH--------HHHhcCCHHHHHHHHH--HHHH---hcCCCCchHhhHHHHHHHHHccCCH-----
Q 012442 213 ----VDPDGDSFAILLE--------GWEKEGNVEEANKTFG--EMVE---RFEWNPEHVLAYETFLITLIRGKQV----- 270 (463)
Q Consensus 213 ----~~~~~~~~~~l~~--------~~~~~g~~~~a~~~~~--~~~~---~~~~~p~~~~~~~~li~~~~~~~~~----- 270 (463)
.+.....|.-+++ .+...++-.++..-|. .... ..+..| ......+.+.+....
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~----~lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIP----ALKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccch----hHHHHHHHHhhhhhhhhHHH
Confidence 1111112222211 0011111111111111 0000 011122 122222333333221
Q ss_pred -----HHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 012442 271 -----DEALKFLRVMK-GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344 (463)
Q Consensus 271 -----~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 344 (463)
.+-+.+.+.+. +.|.....-+.+--+.-+...|+-.+|.++-.+. + -||-..|..=+.+++..+++++-
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F-k----ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF-K----IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc-C----CcchhhHHHHHHHHHhhhhHHHH
Confidence 11111111111 1122223334444555566677777777766552 1 35666666667777777777666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHH
Q 012442 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419 (463)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 419 (463)
+++-+..+ .+.-|.-.+.+|.+.|+.++|.+++.+... +.-...+|.+.|++.+|.++--
T Consensus 735 ekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 735 EKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHH
Confidence 55544432 245566677777777777777777654321 1145566777777777765543
No 205
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.10 E-value=0.0039 Score=49.32 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCCcCHHH
Q 012442 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS-----MHGVEQDVVA 184 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~~~ 184 (463)
+...++..+...|++++|..+...+...++.+...|..+|.+|...|+..+|.++|+++. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 444555556666777777777777766666666677777777777777777777666653 2356665544
No 206
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.10 E-value=0.2 Score=45.12 Aligned_cols=261 Identities=13% Similarity=0.095 Sum_probs=138.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 012442 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 194 (463)
+|..+.......|+.+-|..+++. . |+ -..-+-.+.+.|+.+.| +.+..+.| .||. +|..|+..--+
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~----E-p~---~~~qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~L~~~ 68 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL----E-PR---ASKQVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLHLKRK 68 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc----C-CC---hHHHHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHHHHHh
Confidence 577778888888999988887754 1 11 11224445556666666 44555554 4443 33444433222
Q ss_pred cCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHH
Q 012442 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274 (463)
Q Consensus 195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~ 274 (463)
. . .. +++..+.. .|.. ..+...|++..+.+.-..+|.+--+. ...+...+-.++.. .+.+.-.
T Consensus 69 l-~-~s---~f~~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~d~~------~~~a~~~l~~~~~~-~~~~~~~ 131 (319)
T PF04840_consen 69 L-S-LS---QFFKILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQEDRF------QELANLHLQEALSQ-KDVEEKI 131 (319)
T ss_pred C-C-HH---HHHHHHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhcchH------HHHHHHHHHHHHhC-CChHHHH
Confidence 2 1 11 22222221 1221 23444566666666666666543221 11122222233322 3333333
Q ss_pred HHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 012442 275 KFLRVMKGEN-CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353 (463)
Q Consensus 275 ~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (463)
..+....+.- -..+......++.-..+ + .++-+.+....+..-...+.+..|.-+...|+...|.++-.+..
T Consensus 132 ~~L~~a~~~y~~~k~~~f~~~~~e~q~~---L---l~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk- 204 (319)
T PF04840_consen 132 SFLKQAQKLYSKSKNDAFEAKLIEEQIK---L---LEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFK- 204 (319)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHH---H---HHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcC-
Confidence 3333222110 00111111122211111 1 11111111112221122345566777788899998888877663
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 012442 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421 (463)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 421 (463)
-|+..-|...+.+|+..+++++-.++... .-.+.-|..++.+|.+.|+..+|..+..++
T Consensus 205 ---v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~ 263 (319)
T PF04840_consen 205 ---VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKI 263 (319)
T ss_pred ---CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhC
Confidence 58999999999999999999988876432 123478999999999999999999998873
No 207
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.07 E-value=0.24 Score=45.40 Aligned_cols=140 Identities=10% Similarity=0.046 Sum_probs=94.6
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHH
Q 012442 140 KEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219 (463)
Q Consensus 140 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 219 (463)
.+.++.|..+|-.||+-+...|..++..+++++|..- .+--...|...+++=... +++..++.+|.+...+ ..+...
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~-~df~svE~lf~rCL~k-~l~ldL 111 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELAR-KDFRSVESLFGRCLKK-SLNLDL 111 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhh-hhHHHHHHHHHHHHhh-hccHhH
Confidence 3455678999999999999999999999999999842 233345677777776667 8999999999986653 234677
Q ss_pred HHHHHHHHHhcCCH------HHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHcc---CC------HHHHHHHHHHHhh
Q 012442 220 FAILLEGWEKEGNV------EEANKTFGEMVERFEWNPEHVLAYETFLITLIRG---KQ------VDEALKFLRVMKG 282 (463)
Q Consensus 220 ~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~---~~------~~~a~~~~~~m~~ 282 (463)
|...++.--+.+.. -...+.|+-...-.++.|.....|+..+.-+-.- |. .+...+.+.+|..
T Consensus 112 W~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 112 WMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred HHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence 77777655544321 1122344443333577887777787776655432 44 4455666666654
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.06 E-value=0.015 Score=50.62 Aligned_cols=97 Identities=12% Similarity=0.145 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCC---CHHH
Q 012442 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV----VAVNSLLSAICRQENQTSRALEFLNRVKKIVDP---DGDS 219 (463)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ 219 (463)
...|...+..+.+.|++++|...|+.+.+. .|+. ..+.-+...|... |++++|...|+.+.+..+. ....
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~-g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNK-GKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 445666666667778999999999988875 3443 4556677777888 9999999999998764333 4555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012442 220 FAILLEGWEKEGNVEEANKTFGEMVER 246 (463)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 246 (463)
+..+..++...|+.++|.++|+.+.+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666677788899999999999999876
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.06 E-value=0.0045 Score=42.04 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=51.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHH
Q 012442 120 VDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184 (463)
Q Consensus 120 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 184 (463)
-..|.+.+++++|+++++.+...++.+...|.....++.+.|++++|.+.|+...+. .|+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 356788899999999999988888888888888888999999999999999988875 344433
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.96 E-value=0.085 Score=50.34 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 012442 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 216 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (463)
+..+...+...+.+...+.-|-++|..|-+ ...++......++|.+|+.+-+...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-----------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD-----------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc-----------HHHHhhheeecccchHhHhhhhhCcc
Confidence 334444445555555666666777766632 12345556666777777777666544
No 211
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.91 E-value=0.22 Score=42.35 Aligned_cols=178 Identities=11% Similarity=0.038 Sum_probs=96.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 119 MVDVLGKNGRFEQMWNAVRVMKEDGVL---SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 119 li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
-+..-.+.|++++|.+.|+.+..+.+- ...+.-.++.++.+.+++++|+..+++....--.-....|..-|.+++..
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~ 119 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence 334445678888888888888877652 45566677777888888888888888876543222233444444444321
Q ss_pred ------CCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCC
Q 012442 196 ------ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269 (463)
Q Consensus 196 ------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~ 269 (463)
..|...+...|..+.. ++.-|=...-..+|......+... =...=-.+.+-|.+.|.
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~-----------~i~ryPnS~Ya~dA~~~i~~~~d~------LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKE-----------LVQRYPNSRYAPDAKARIVKLNDA------LAGHEMAIARYYLKRGA 182 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHH-----------HHHHCCCCcchhhHHHHHHHHHHH------HHHHHHHHHHHHHHhcC
Confidence 1444445555544433 111111111222222222222211 00011234466777777
Q ss_pred HHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 270 VDEALKFLRVMKGENCFPTL---KFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 270 ~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
+..|..-+++|.+. .+-+. ..+-.+..+|...|-.++|.+.-.-
T Consensus 183 ~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 183 YVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred hHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 77777777777766 23222 2344556677777777777666555
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.89 E-value=0.007 Score=41.09 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=33.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 012442 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (463)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (463)
..|.+.+++++|.++++.+... .|++...|......+.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL---DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh---CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3455556666666666666443 55555555556666666666666666666665543
No 213
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.86 E-value=0.17 Score=40.47 Aligned_cols=137 Identities=14% Similarity=0.074 Sum_probs=91.2
Q ss_pred CCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHH
Q 012442 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327 (463)
Q Consensus 248 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 327 (463)
...| ++..-..|.+++...|+..+|...|.+....-+--|....-.+.++....+++..|...++.+++...-..+..+
T Consensus 84 ~~Ap-Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 84 AIAP-TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hhch-hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 4455 455556677778888888888888887776555566777777777778888888888888887665433333344
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 012442 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387 (463)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 387 (463)
...+...+...|++.+|..-|+..... -|+...-......+.++|+.+++..-+..+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 555667777778888888888887765 4555444444455666776666654444433
No 214
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.34 Score=43.90 Aligned_cols=255 Identities=11% Similarity=0.023 Sum_probs=140.1
Q ss_pred CCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHH-
Q 012442 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD- 171 (463)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~- 171 (463)
..+..|+..+..+....+-++.-|..=...+...|++++|.--.+.-.+...-....+.-.-+++...++..+|.+.++
T Consensus 63 k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~ 142 (486)
T KOG0550|consen 63 KTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKS 142 (486)
T ss_pred hhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhh
Confidence 3445566666555554555555566666666666677766655544333322111122222333333333333332222
Q ss_pred --------------HHHhCC-CCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012442 172 --------------VMSMHG-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236 (463)
Q Consensus 172 --------------~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 236 (463)
...... -+|.-.+|..+=.-|.-..|+.++|.+.--.+.+-...+....-.=..++.-.++.+.+
T Consensus 143 ~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka 222 (486)
T KOG0550|consen 143 KQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKA 222 (486)
T ss_pred hhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHH
Confidence 111111 12444555555433333338888888776665553333333333333344456778888
Q ss_pred HHHHHHHHHhcCCCCchH------------hhHHHHHHHHHccCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHH
Q 012442 237 NKTFGEMVERFEWNPEHV------------LAYETFLITLIRGKQVDEALKFLRVMKGEN---CFPTLKFFSNALDILVK 301 (463)
Q Consensus 237 ~~~~~~~~~~~~~~p~~~------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~ 301 (463)
...|++... ..|+.. ..|..=.+-..+.|.+.+|.+.|.+.+... +.++...|........+
T Consensus 223 ~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r 299 (486)
T KOG0550|consen 223 INHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR 299 (486)
T ss_pred HHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc
Confidence 888887754 345211 112222344567789999999998886643 44555667777777888
Q ss_pred cCCHhHHHHHHHHHHHhcCCCCCHH-HHHHHH--HHHHHcCCHhHHHHHHHHHHHCC
Q 012442 302 LNDSTHAVQLWDIMMVFHGAFPDSL-TYNMIF--ECLIKNKRVHEVEKFFHEMIKNE 355 (463)
Q Consensus 302 ~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li--~~~~~~~~~~~a~~~~~~~~~~~ 355 (463)
.|+.++|+.--+.... .|.. ....+. .++...+++++|.+-|++..+..
T Consensus 300 Lgrl~eaisdc~~Al~-----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 300 LGRLREAISDCNEALK-----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred cCCchhhhhhhhhhhh-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999988888777532 3332 222222 34555678889998888887753
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.82 E-value=0.013 Score=46.28 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcCCCCChh
Q 012442 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL-----ENGILPLEA 396 (463)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~ 396 (463)
...++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+...|.++|+++. +.|+.|+..
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3344445555566666666666665554 5555566666666666666666666655543 235555543
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.28 Score=41.66 Aligned_cols=140 Identities=11% Similarity=0.068 Sum_probs=93.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHH---
Q 012442 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF--- 332 (463)
Q Consensus 256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li--- 332 (463)
..+.++..+.-.|.+.-....+.+..+...+.++.....|.+.-.+.||.+.|..+|+.+ ++..-+.+..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v-ek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV-EKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHhhhhccchhHHHHhh
Confidence 556677777777888888888888888766667777888888888888888888888874 3222233333444333
Q ss_pred --HHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 012442 333 --ECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASAN 399 (463)
Q Consensus 333 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 399 (463)
..|.-.+++-+|...|.+....+ .-|....|.=.-+..-.|+..+|.+..+.|.+. .|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 23445677888888888877765 445555554444444567888888888888874 34444444
No 217
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.67 E-value=0.34 Score=46.49 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChh-----------
Q 012442 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA----------- 396 (463)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----------- 396 (463)
...+...+-+...+..|-++|.+|-+. ..+++.....+++.+|..+-+...+ +.||..
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhh
Confidence 333333334444555566666555322 2455555666666666665554433 222221
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 012442 397 SANELLVGLRNLGRLSDVRRFAEEMLNR 424 (463)
Q Consensus 397 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 424 (463)
-|.---.+|.+.|+..+|.++++++...
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1222234566777777777777777644
No 218
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.3 Score=42.37 Aligned_cols=125 Identities=10% Similarity=0.088 Sum_probs=66.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc
Q 012442 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ 198 (463)
Q Consensus 119 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 198 (463)
-.......|++.+|...|.........+...--.++.+|...|+.+.|..++..+...--.........-|..+.+. ..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa-a~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA-AA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH-hc
Confidence 33445667888888888887777766666677777788888888888888887775431111111111122222222 22
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012442 199 TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 199 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
..+...+-+.... .+-|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 219 ~~~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 219 TPEIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCCHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222222222211 222444555555555555666555555444444
No 219
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.50 E-value=0.26 Score=38.51 Aligned_cols=43 Identities=9% Similarity=0.096 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 012442 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160 (463)
Q Consensus 118 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~ 160 (463)
.++..+...+.......+++.+...+..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 3444444444455555555544444433444444555544443
No 220
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.50 E-value=0.65 Score=42.44 Aligned_cols=78 Identities=13% Similarity=0.020 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCchHhhHHHHHHHHHc---cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012442 222 ILLEGWEKEGNVEEANKTFGEMVERFEW-NPEHVLAYETFLITLIR---GKQVDEALKFLRVMKGENCFPTLKFFSNALD 297 (463)
Q Consensus 222 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 297 (463)
.++-.|-...+++...++++.+..-..+ .+.....-.....++-+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566666666666666666542111 11111222233444444 5666667766666544444556666666555
Q ss_pred HH
Q 012442 298 IL 299 (463)
Q Consensus 298 ~~ 299 (463)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 221
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.48 E-value=0.11 Score=49.02 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=73.4
Q ss_pred hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHH
Q 012442 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204 (463)
Q Consensus 125 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~ 204 (463)
-.++++++.++...-.-....+....+.++..+-+.|..+.|+++-.+-. .-.....+. |+.+.|.+
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~l-g~L~~A~~ 339 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQL-GNLDIALE 339 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHC-T-HHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhc-CCHHHHHH
Confidence 34555555544431110000124445566666666666666665533221 112333444 66666655
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 012442 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (463)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (463)
+.++. .+...|..|.+...+.|+++-|++.|.+.. -|..|+-.|.-.|+.+...++.+.....|
T Consensus 340 ~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 340 IAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 54333 245566666666666666666666666542 14445555566666666555555555554
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 285 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
-++....++.-.|+.++..+++.+
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 144444455555666666655544
No 222
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.23 Score=43.70 Aligned_cols=151 Identities=15% Similarity=0.097 Sum_probs=81.8
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHH----HHHHHHHHHcCC
Q 012442 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF----SNALDILVKLND 304 (463)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----~~ll~~~~~~g~ 304 (463)
..|+..+|-..++++.+. .|.|..++...-.+|...|+.+.....++++... ..+|...| ....-++...|-
T Consensus 115 ~~g~~h~a~~~wdklL~d---~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD---YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHHh---CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 456666777777777665 5666667777777777777777777777766544 12333222 222333446677
Q ss_pred HhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhCCCCHHHHHH
Q 012442 305 STHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN---EWQPTPLNCATAITMLLDADEPEIAIE 381 (463)
Q Consensus 305 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~ 381 (463)
+++|++.-++..... +-|...-.+....+-..|++.++.++..+-... +--.-...|-...-.+...+.++.|++
T Consensus 191 y~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 777776666543211 123444445555555666676666665543321 101111223333334445566777777
Q ss_pred HHHH
Q 012442 382 IWNY 385 (463)
Q Consensus 382 ~~~~ 385 (463)
+|+.
T Consensus 269 IyD~ 272 (491)
T KOG2610|consen 269 IYDR 272 (491)
T ss_pred HHHH
Confidence 6654
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.47 E-value=0.1 Score=48.22 Aligned_cols=68 Identities=7% Similarity=-0.153 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012442 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL---PTFASIFDSYCGAGKYDEAVMSFDVMSMH 176 (463)
Q Consensus 109 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (463)
.+.+...|+.+..+|...|++++|+..|+...+.++.+. .+|..+..+|...|++++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467778889999999999999999999999888877655 45888999999999999999999998864
No 224
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.38 E-value=0.72 Score=41.65 Aligned_cols=286 Identities=13% Similarity=0.088 Sum_probs=115.2
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHH--hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLG--KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 167 (463)
...|+...|.+.-.........|....-.++.+-. -.|+++.|.+-|+.|...--.-.--...|.-.--+.|+.+.|.
T Consensus 95 agAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 95 AGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred hccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 34455555555554444334444444444443322 2355555555555554321101111222223333445555555
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc--CCCCCHHHH--HHHHHHHHh---cCCHHHHHHHH
Q 012442 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSF--AILLEGWEK---EGNVEEANKTF 240 (463)
Q Consensus 168 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~--~~l~~~~~~---~g~~~~a~~~~ 240 (463)
+.-+..-... +.-...+...+...+.. |+++.|+++++.-+. .+.++..-- ..|+.+-.. ..+...|...-
T Consensus 175 ~yAe~Aa~~A-p~l~WA~~AtLe~r~~~-gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 175 HYAERAAEKA-PQLPWAARATLEARCAA-GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHhhc-cCCchHHHHHHHHHHhc-CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 5544444321 22234445555555555 555555555555433 233333221 112221111 11222333333
Q ss_pred HHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcC
Q 012442 241 GEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG 320 (463)
Q Consensus 241 ~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 320 (463)
.+. ..+.|+-+..--.-...+.+.|+..++-.+++.+-+....|+ .+. +..+.+.|+ .+..-++.......
T Consensus 253 ~~a---~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlkRa~~L~s 323 (531)
T COG3898 253 LEA---NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGD--TALDRLKRAKKLES 323 (531)
T ss_pred HHH---hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCC--cHHHHHHHHHHHHh
Confidence 222 223342222222333455555555555555555555432222 111 111222332 22222222222222
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Q 012442 321 AFPD-SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL-DADEPEIAIEIWNYILE 388 (463)
Q Consensus 321 ~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~ 388 (463)
.+|| ...-..+..+-...|++..|..--+..... .|....|..|.+.-. ..|+-.++...+.+..+
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3332 233344444444555555554444444332 445555554444332 22555555555444443
No 225
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.38 E-value=0.14 Score=48.39 Aligned_cols=167 Identities=16% Similarity=0.062 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHhccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 012442 79 PTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYC 158 (463)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~ 158 (463)
.+...+.--+....++.+.+.+..+.-.--..-...-.+.++..+-+.|..+.|+++..+-.. -.....
T Consensus 261 ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-----------rFeLAl 329 (443)
T PF04053_consen 261 LDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH-----------RFELAL 329 (443)
T ss_dssp --HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-----------HHHHHH
T ss_pred ECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH-----------HhHHHH
Confidence 344444444445668888876666521111122255689999999999999999998765332 345566
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012442 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238 (463)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 238 (463)
+.|+++.|.++.++. .+...|..|.....+. |+++.|++.|.+..+ |..|+-.|.-.|+.+.-.+
T Consensus 330 ~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~-g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKEL------DDPEKWKQLGDEALRQ-GNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCCC------STHHHHHHHHHHHHHT-TBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHc-CCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHH
Confidence 789999998875443 4677999999999999 999999999999876 6677788888999888888
Q ss_pred HHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHH
Q 012442 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279 (463)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~ 279 (463)
+.+....+ | -++....++...|+.++..+++.+
T Consensus 395 l~~~a~~~-~-------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 395 LAKIAEER-G-------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHT-T--------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHc-c-------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88777654 2 255556667777888888877754
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=96.36 E-value=0.14 Score=40.32 Aligned_cols=88 Identities=6% Similarity=-0.057 Sum_probs=52.8
Q ss_pred HHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHH
Q 012442 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPE 377 (463)
Q Consensus 298 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 377 (463)
-+...|++++|..+|.-+..... -+..-|..|..++-..+++++|...|......+ .-|...+-....+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 34466777777777766433222 233445566666666667777777766665554 345555555666666677777
Q ss_pred HHHHHHHHHHH
Q 012442 378 IAIEIWNYILE 388 (463)
Q Consensus 378 ~a~~~~~~~~~ 388 (463)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77776666665
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.34 E-value=0.084 Score=45.17 Aligned_cols=98 Identities=19% Similarity=0.161 Sum_probs=56.4
Q ss_pred HHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHH
Q 012442 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPD---GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260 (463)
Q Consensus 184 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~l 260 (463)
.|+.-+..+- . |++..|...|....++.+-+ ...+-.|..++...|++++|..+|..+.+.++-.|.-..++-.|
T Consensus 144 ~Y~~A~~~~k-s-gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYK-S-GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-c-CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4555444443 3 55666666666655533322 23344466666666666666666666666544444444555666
Q ss_pred HHHHHccCCHHHHHHHHHHHhhC
Q 012442 261 LITLIRGKQVDEALKFLRVMKGE 283 (463)
Q Consensus 261 i~~~~~~~~~~~a~~~~~~m~~~ 283 (463)
..+....|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 66666666666666666666554
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.32 E-value=0.23 Score=37.26 Aligned_cols=140 Identities=15% Similarity=0.217 Sum_probs=68.1
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 012442 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307 (463)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 307 (463)
.-.|.+++..++..+.... .+..-+|-+|--....-+-+-..++++..-+. .|.. ..|++..
T Consensus 13 ildG~V~qGveii~k~v~S-----sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKr 74 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS-----SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKR 74 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH-----S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THH
T ss_pred HHhchHHHHHHHHHHHcCc-----CCccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHH
Confidence 3457777777777766654 13444555555555444445555555444322 2221 1222222
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 012442 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387 (463)
Q Consensus 308 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 387 (463)
....+-. ...+......-++.+...|+-+.-.+++.++...+ .+++...-.+..+|.+.|+..++.+++.++.
T Consensus 75 Vi~C~~~------~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 75 VIECYAK------RNKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHH------TT---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHH------hcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 2222222 01233344445566666777777777777766544 5666667777777777777777777777777
Q ss_pred HcCCC
Q 012442 388 ENGIL 392 (463)
Q Consensus 388 ~~~~~ 392 (463)
+.|++
T Consensus 148 ekG~k 152 (161)
T PF09205_consen 148 EKGLK 152 (161)
T ss_dssp HTT-H
T ss_pred HhchH
Confidence 76653
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=96.28 E-value=0.12 Score=40.83 Aligned_cols=96 Identities=13% Similarity=0.011 Sum_probs=75.0
Q ss_pred CHHHHHHHHH-----hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHH
Q 012442 80 TPDLVHEVLQ-----LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF 154 (463)
Q Consensus 80 ~~~~~~~~l~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li 154 (463)
+......+-. -..|++++|..+|..+..-.+.|..-|..|..++-..+++++|+..|...-..++.|...+....
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 4444444444 34689999999998877666777778888888888889999999999887776665655677788
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 012442 155 DSYCGAGKYDEAVMSFDVMSM 175 (463)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~ 175 (463)
.++...|+.+.|...|.....
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 888999999999999888876
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.27 E-value=0.016 Score=39.90 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHc----CC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 012442 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKED----GV--L-SLPTFASIFDSYCGAGKYDEAVMSFDVMS 174 (463)
Q Consensus 114 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 174 (463)
.+|+.+...|...|++++|+..|++..+. |. + ...++..+..++...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777777888888888888887776543 11 1 14466777777777777777777777654
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.27 E-value=0.017 Score=39.82 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---cCC-CCchHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 012442 218 DSFAILLEGWEKEGNVEEANKTFGEMVER---FEW-NPEHVLAYETFLITLIRGKQVDEALKFLRVM 280 (463)
Q Consensus 218 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m 280 (463)
.+++.+...|...|++++|+..|++..+. .|- .|....+++.+...+...|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555666666666555555432 110 0111334555555555555555555555544
No 232
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.27 E-value=0.055 Score=46.17 Aligned_cols=106 Identities=8% Similarity=-0.023 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChh
Q 012442 322 FPDSLTYNMIFECLIKN-----KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA 396 (463)
Q Consensus 322 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 396 (463)
+.|..+|.+.+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+..-. |..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cHH-
Confidence 45777888888777653 56777888888899999999999999998887654311 110
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 397 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
++....--|- .+-+-+..++++|...|+.||..+-..|+++|.+.|..
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1111111111 12234566666666666666666666666666665544
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.23 E-value=0.099 Score=48.35 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 012442 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDS----LTYNMIFECLIKNKRVHEVEKFFHEMIKN 354 (463)
Q Consensus 287 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 354 (463)
.+...++.+..+|.+.|++++|...|++.+.. .|+. .+|..+..+|...|+.++|.+.+++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35567888888888888888888888876553 3442 35777888888888888888888888775
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.23 E-value=0.23 Score=47.67 Aligned_cols=87 Identities=22% Similarity=0.200 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCCCchHhhHHHHHHHHHccCCHHHHHH
Q 012442 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALK 275 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~~~~li~~~~~~~~~~~a~~ 275 (463)
.+.+.+.++++.+.+..|....-.-.-.+.+...|++++|.+.|+..... .....-....+--+...+.-..+|++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 45555555555555544333333333344455555555555555543210 01111122233344444555556666666
Q ss_pred HHHHHhhC
Q 012442 276 FLRVMKGE 283 (463)
Q Consensus 276 ~~~~m~~~ 283 (463)
.|..+.+.
T Consensus 327 ~f~~L~~~ 334 (468)
T PF10300_consen 327 YFLRLLKE 334 (468)
T ss_pred HHHHHHhc
Confidence 66666554
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=96.21 E-value=0.61 Score=43.42 Aligned_cols=97 Identities=6% Similarity=-0.039 Sum_probs=44.6
Q ss_pred CCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHH
Q 012442 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328 (463)
Q Consensus 250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 328 (463)
.|.|..+...+..+....++++.|...|++....+ || ..+|....-...-.|+.++|.+.+++.+.....+......
T Consensus 334 d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~ 411 (458)
T PRK11906 334 TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVI 411 (458)
T ss_pred CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHH
Confidence 45455555555555555555566666665555543 32 2333333333444555555555555544433322223333
Q ss_pred HHHHHHHHHcCCHhHHHHHHH
Q 012442 329 NMIFECLIKNKRVHEVEKFFH 349 (463)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~ 349 (463)
-..++.|+..+ .++|.++|-
T Consensus 412 ~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 412 KECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHcCCc-hhhhHHHHh
Confidence 33333444333 444444443
No 236
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.06 E-value=1.5 Score=42.11 Aligned_cols=118 Identities=13% Similarity=0.048 Sum_probs=86.8
Q ss_pred CCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hcCChHHHHHHHH
Q 012442 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYC-GAGKYDEAVMSFD 171 (463)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~ 171 (463)
...+.+..+++.+....|.----|......=.+.|..+.+.++|++....-+.+...|......+. ..|+.+...+.|+
T Consensus 59 ~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 344666677777776666655677888888888899999999999987665557777776665544 4577888888888
Q ss_pred HHHhC-CCC-cCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc
Q 012442 172 VMSMH-GVE-QDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211 (463)
Q Consensus 172 ~m~~~-g~~-~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 211 (463)
..... |.. .+...|...|.--..+ +++.....+++++.+
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~q-ks~k~v~~iyeRile 179 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQ-KSWKRVANIYERILE 179 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhcc-ccHHHHHHHHHHHHh
Confidence 87743 322 3456677788877777 999999999998775
No 237
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.14 Score=46.29 Aligned_cols=106 Identities=15% Similarity=0.047 Sum_probs=52.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 012442 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233 (463)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 233 (463)
...|.+.|++..|..-|+..... |. +... -+.++... ... .-..+++.+.-+|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~-~~~ee~~~-~~~------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRS-FDEEEQKK-AEA------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-cccc-CCHHHHHH-HHH------HHHHHhhHHHHHHHhhhhH
Confidence 45677888888888888776532 00 0000 01111100 001 1122344455555555555
Q ss_pred HHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 012442 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283 (463)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 283 (463)
..|++.-+.... ..|+|+-+...-..++...|+++.|...|.++++.
T Consensus 274 ~~Ai~~c~kvLe---~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 274 KEAIESCNKVLE---LDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHHHh---cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 555555555532 24445555555555555555555555555555553
No 238
>PRK11906 transcriptional regulator; Provisional
Probab=95.95 E-value=0.52 Score=43.85 Aligned_cols=120 Identities=10% Similarity=0.078 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHcc---------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 012442 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG---------KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL 302 (463)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 302 (463)
..+.|..+|.+......++|+....|..+..++... .+..+|.++-+...+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 356778888888744456776666666555444322 23445555666555554 34555555555555666
Q ss_pred CCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 012442 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354 (463)
Q Consensus 303 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 354 (463)
++++.|...|++........++...|..++ +.-.|+.++|.+.+++..+.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~--~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALV--HFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHH--HHHcCCHHHHHHHHHHHhcc
Confidence 666666666666433222222222233332 34456666666666665544
No 239
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.93 E-value=0.11 Score=44.54 Aligned_cols=88 Identities=13% Similarity=-0.010 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC----------------HhHH
Q 012442 286 FPTLKFFSNALDILVKL-----NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR----------------VHEV 344 (463)
Q Consensus 286 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------------~~~a 344 (463)
.-|...|...+..+... +.++-....++. |+..|+..|..+|+.|+..+-+..- -+-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~-m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~ 142 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKY-MKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCA 142 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHH-HHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHH
Confidence 45677888888877643 566666667777 7889999999999999998765331 1234
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhCCC
Q 012442 345 EKFFHEMIKNEWQPTPLNCATAITMLLDAD 374 (463)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 374 (463)
.+++++|...|+.||..+-..|++++.+.+
T Consensus 143 I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 143 IKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 445555555555555555555555554444
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=1 Score=39.19 Aligned_cols=166 Identities=16% Similarity=0.082 Sum_probs=113.8
Q ss_pred hhHHHHHhhCCCCCCHHHHHHHHH-hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 012442 66 DDIESALACTGIIPTPDLVHEVLQ-LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV 144 (463)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~~~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 144 (463)
+++...+.+....+....+..... ...++...|...|+.+....+-+...--.+..+|...|+.+.|..++..+.....
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 456666666665555555555555 5578999999999988876667778888899999999999999999998876543
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc--CCCCCHHHHH
Q 012442 145 LS-LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFA 221 (463)
Q Consensus 145 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~ 221 (463)
.+ ......-|..+.+.....+...+-...-.. +-|...-..+...+... |+.+.|.+.+-.+.. ..--|...-.
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~-g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLV-GRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 22 222333456666666666666666666552 33666677788888888 999999887666543 3334555566
Q ss_pred HHHHHHHhcCCHH
Q 012442 222 ILLEGWEKEGNVE 234 (463)
Q Consensus 222 ~l~~~~~~~g~~~ 234 (463)
.++..+.-.|.-+
T Consensus 277 ~lle~f~~~g~~D 289 (304)
T COG3118 277 TLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHhcCCCC
Confidence 6666666555433
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.91 E-value=0.032 Score=33.32 Aligned_cols=41 Identities=15% Similarity=0.358 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHH
Q 012442 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261 (463)
Q Consensus 218 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li 261 (463)
.++..+...|...|++++|.++|++..+. .|+|...|..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~---~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL---DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCCHHHHHHhh
Confidence 35667777888888888888888888765 676666665543
No 242
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.90 E-value=1.2 Score=39.62 Aligned_cols=122 Identities=18% Similarity=0.102 Sum_probs=58.5
Q ss_pred HhCCChHHHHHHHHHHHHcC-CCCHH--------HHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCcC-----
Q 012442 124 GKNGRFEQMWNAVRVMKEDG-VLSLP--------TFASIFDSYCGAGKYDEAVMSFDVMSMH--------GVEQD----- 181 (463)
Q Consensus 124 ~~~g~~~~a~~~~~~m~~~~-~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~----- 181 (463)
.+.|+++.|..++.+..... ..++. .|+.-...+.+..+++.|...+++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45677777777777766544 22222 2333333333222666666665554321 11122
Q ss_pred HHHHHHHHHHHHccCCcHH---HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012442 182 VVAVNSLLSAICRQENQTS---RALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246 (463)
Q Consensus 182 ~~~~~~ll~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 246 (463)
..+...++.+|... +..+ +|..+++.+.+..+-...++..-++.+.+.++.+.+.+++.+|...
T Consensus 84 ~~iL~~La~~~l~~-~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEW-DTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 22344455555554 4333 3333444444433333444444455555556666666666666553
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=1 Score=38.04 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 012442 149 TFASIFDSYCGAGKYDEAVMSFDVMS 174 (463)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~ 174 (463)
.|.....+|....++++|...+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 44444555555555555555544443
No 244
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.74 E-value=0.95 Score=37.43 Aligned_cols=183 Identities=13% Similarity=0.062 Sum_probs=92.8
Q ss_pred CCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012442 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172 (463)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 172 (463)
|-+..|+--|.......|.-+..||-+.-.+...|+++.|.+.|+...+.++....+...-.-++.-.|++.-|.+-|.+
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 44455555566555555556677888888888888888888888888887765433333223334456788888877766
Q ss_pred HHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc
Q 012442 173 MSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE 252 (463)
Q Consensus 173 m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 252 (463)
.-+.. |+. .|.+|---+...+-++.+|..-+.+--++ .|..-|...|-.|.- |++. ...+++.+... .-...
T Consensus 159 fYQ~D--~~D-PfR~LWLYl~E~k~dP~~A~tnL~qR~~~--~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~ 230 (297)
T COG4785 159 FYQDD--PND-PFRSLWLYLNEQKLDPKQAKTNLKQRAEK--SDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNT 230 (297)
T ss_pred HHhcC--CCC-hHHHHHHHHHHhhCCHHHHHHHHHHHHHh--ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchH
Confidence 65542 221 12222222222224555554433332211 344444443333321 1111 11222222221 00000
Q ss_pred -----hHhhHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 012442 253 -----HVLAYETFLITLIRGKQVDEALKFLRVMKGE 283 (463)
Q Consensus 253 -----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 283 (463)
=..||--+..-+...|+.++|..+|+-....
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1134555556666666666666666655443
No 245
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.24 Score=44.87 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=59.6
Q ss_pred HHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHH
Q 012442 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263 (463)
Q Consensus 184 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~ 263 (463)
+++.+..++.+. +++..|++.-+....--++|.....--..+|...|+++.|+..|+.+.+. .|.|..+-+.++..
T Consensus 259 ~~lNlA~c~lKl-~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~---~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 259 CHLNLAACYLKL-KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL---EPSNKAARAELIKL 334 (397)
T ss_pred HhhHHHHHHHhh-hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 455566666666 67777777666666655666666666677777777777777777777554 66665555555555
Q ss_pred HHccCCHH-HHHHHHHHHhh
Q 012442 264 LIRGKQVD-EALKFLRVMKG 282 (463)
Q Consensus 264 ~~~~~~~~-~a~~~~~~m~~ 282 (463)
-.+..... ...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 55544433 33566666644
No 246
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.66 E-value=0.82 Score=40.86 Aligned_cols=226 Identities=12% Similarity=0.007 Sum_probs=136.4
Q ss_pred CcHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchH---hhHHHHHHHHHccCCH
Q 012442 197 NQTSRALEFLNRVKK---IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV---LAYETFLITLIRGKQV 270 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~~li~~~~~~~~~ 270 (463)
.+.++++..+.+... ....--.++..+..+.++.|.+++++..--...+-..-.-+.. .+|..+..++-+.-++
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f 99 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEF 99 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778888887776544 2223345666777888888888887765443332111011011 2333444444444455
Q ss_pred HHHHHHHHHHhhC-CCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHHcCCHh
Q 012442 271 DEALKFLRVMKGE-NCFP---TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP----DSLTYNMIFECLIKNKRVH 342 (463)
Q Consensus 271 ~~a~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~ 342 (463)
.+++.+-+.-... |..| .-....++-.++.-.+.++++.+.|+..++...-.. ....|..|-..|.+..+++
T Consensus 100 ~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~ 179 (518)
T KOG1941|consen 100 HKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYE 179 (518)
T ss_pred hhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhh
Confidence 5555554443322 2222 113344566777778889999999998766543322 2357888888899999999
Q ss_pred HHHHHHHHHHH----CCCCCCHHHHH-----HHHHHHhCCCCHHHHHHHHHHHHH----cCCCC-ChhhHHHHHHHHHcC
Q 012442 343 EVEKFFHEMIK----NEWQPTPLNCA-----TAITMLLDADEPEIAIEIWNYILE----NGILP-LEASANELLVGLRNL 408 (463)
Q Consensus 343 ~a~~~~~~~~~----~~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~----~~~~p-~~~~~~~li~~~~~~ 408 (463)
+|.-+..+..+ .++..-..-|. .+.-++-..|++..|.+..++..+ .|-.+ -......+.+.|...
T Consensus 180 Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~ 259 (518)
T KOG1941|consen 180 KALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSR 259 (518)
T ss_pred HHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhc
Confidence 99887777654 23322222333 344567778888888888887664 34222 122445677788899
Q ss_pred CCHHHHHHHHHHHH
Q 012442 409 GRLSDVRRFAEEML 422 (463)
Q Consensus 409 g~~~~a~~~~~~m~ 422 (463)
|+.+.|+.-|++..
T Consensus 260 gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 260 GDLERAFRRYEQAM 273 (518)
T ss_pred ccHhHHHHHHHHHH
Confidence 99999888777643
No 247
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.62 E-value=1.8 Score=39.71 Aligned_cols=82 Identities=20% Similarity=0.234 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCcCHHHHHHHHHHHHc---cCCcHHHHHHHHHH-hhcCCCCCH
Q 012442 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG---VEQDVVAVNSLLSAICR---QENQTSRALEFLNR-VKKIVDPDG 217 (463)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~ll~~~~~---~~~~~~~a~~~~~~-~~~~~~~~~ 217 (463)
.+..+...++-.|....+++..+++.+.+.... +.-....-....-++.+ . |+.++|++++.. +.....++.
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~-gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKP-GDREKALQILLPVLESDENPDP 217 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccC-CCHHHHHHHHHHHHhccCCCCh
Confidence 344455556666777777888888877776531 11111111122333344 4 777777777766 444555666
Q ss_pred HHHHHHHHHH
Q 012442 218 DSFAILLEGW 227 (463)
Q Consensus 218 ~~~~~l~~~~ 227 (463)
.+|..+...|
T Consensus 218 d~~gL~GRIy 227 (374)
T PF13281_consen 218 DTLGLLGRIY 227 (374)
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 248
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.54 E-value=0.2 Score=43.56 Aligned_cols=78 Identities=13% Similarity=0.202 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCcCHHHHHHH
Q 012442 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM-----HGVEQDVVAVNSL 188 (463)
Q Consensus 114 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~l 188 (463)
.++..++..+...|+++.+...++++....+-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 35566666777777777777777777777776777777777777777777777777776653 4666666665555
Q ss_pred HHH
Q 012442 189 LSA 191 (463)
Q Consensus 189 l~~ 191 (463)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.52 E-value=0.6 Score=36.00 Aligned_cols=57 Identities=18% Similarity=0.164 Sum_probs=28.8
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 012442 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (463)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (463)
.+.|++++|.+.|+.+..++...|-...+--.++.+|.+.+++++|...+++.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 345555555555555555433333233344445555555555555555555555543
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.51 E-value=0.34 Score=41.57 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-C-CcCHHHHHHHH
Q 012442 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL---SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG-V-EQDVVAVNSLL 189 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~~~~~~~~~ll 189 (463)
.|+.-+..+ +.|++..|...|....+..+. ....+--|...+...|++++|..+|..+.+.- - +--....--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 555555544 456677777777777766552 35566667777777777777777777776531 0 11124444455
Q ss_pred HHHHccCCcHHHHHHHHHHhhcCCCCCHHH
Q 012442 190 SAICRQENQTSRALEFLNRVKKIVDPDGDS 219 (463)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 219 (463)
....+. |+.++|..+|+++.+..+-+..+
T Consensus 223 ~~~~~l-~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRL-GNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHh-cCHHHHHHHHHHHHHHCCCCHHH
Confidence 555666 77777777777777655544433
No 251
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.45 E-value=0.92 Score=35.33 Aligned_cols=86 Identities=10% Similarity=0.119 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 012442 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229 (463)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (463)
...++..+...+........++.+...+ ..+...++.++..|++. + .++..+.++. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~-~-~~~ll~~l~~-----~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY-D-PQKEIERLDN-----KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH-C-HHHHHHHHHh-----ccccCCHHHHHHHHHH
Confidence 3455666666667777777777776665 35566677777777654 2 3334444432 1222333345556666
Q ss_pred cCCHHHHHHHHHHH
Q 012442 230 EGNVEEANKTFGEM 243 (463)
Q Consensus 230 ~g~~~~a~~~~~~~ 243 (463)
.+.++++..++..+
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 66666666665554
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.45 E-value=0.61 Score=35.97 Aligned_cols=81 Identities=11% Similarity=0.148 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012442 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL---SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 191 (463)
.+-.-.....+.|++++|.+.|+.+..+-+. ...+.-.++.+|.+.|++++|...+++.++....--...|...+.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 3334444556778999999999988887652 4667777888899999999999999888876422223445555555
Q ss_pred HHcc
Q 012442 192 ICRQ 195 (463)
Q Consensus 192 ~~~~ 195 (463)
++..
T Consensus 92 L~~~ 95 (142)
T PF13512_consen 92 LSYY 95 (142)
T ss_pred HHHH
Confidence 5443
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.42 E-value=0.06 Score=32.10 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHH
Q 012442 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASI 153 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 153 (463)
+|..+...|.+.|++++|.++|++..+..+.+...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 455566666666666666666666666665555555444
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.23 E-value=2.8 Score=39.50 Aligned_cols=164 Identities=13% Similarity=0.073 Sum_probs=92.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC
Q 012442 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197 (463)
Q Consensus 118 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 197 (463)
.+|...-+..+.+.-.+.-.+..+.++.-...|..|.. -......+|+++|++..+.| + ..+..-- ..... |
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAg-E---~~lg~s~-~~~~~-g 244 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAG-E---ASLGKSQ-FLQHH-G 244 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHH-H---Hhhchhh-hhhcc-c
Confidence 44555556666666666666666655433334443332 23455788889988887654 1 0100000 00000 1
Q ss_pred cHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHH
Q 012442 198 QTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276 (463)
Q Consensus 198 ~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~ 276 (463)
. .++.+.. ...+-..+-..+..++-+.|+.++|.+.|++|.+.+. .-++......|+..+...+.+.++..+
T Consensus 245 ~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p-~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 245 H------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP-NLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred c------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC-ccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 1 1111111 1222333444577777788999999999999876422 112445677888999999999999999
Q ss_pred HHHHhhCCCCCC-HHHHHHHH
Q 012442 277 LRVMKGENCFPT-LKFFSNAL 296 (463)
Q Consensus 277 ~~~m~~~~~~~~-~~~~~~ll 296 (463)
+.+-.+...+.+ ...|+..+
T Consensus 318 L~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 318 LAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHhccccCCchHHHHHHHHH
Confidence 988765433222 34565544
No 255
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.21 E-value=4.7 Score=42.12 Aligned_cols=133 Identities=15% Similarity=0.114 Sum_probs=73.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH----HHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 012442 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL----DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335 (463)
Q Consensus 260 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 335 (463)
.++.--+.|.+.+|+.++. |+...+..+. ..+...+.+++|--.|+.. | -..--+.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~----G------klekAl~a~ 975 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERC----G------KLEKALKAY 975 (1265)
T ss_pred HHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHh----c------cHHHHHHHH
Confidence 3444445555555555543 4554444444 3344556666666666552 1 011234566
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHH
Q 012442 336 IKNKRVHEVEKFFHEMIKNEWQPTPLN--CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413 (463)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 413 (463)
..+|++.+|+.+..++.... +... -..|+.-+...++.-+|-++..+.... ..--+..|++...|++
T Consensus 976 ~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEE 1044 (1265)
T ss_pred HHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHH
Confidence 67778888877777764321 2222 245677777778877777776665431 2233445666667777
Q ss_pred HHHHHHHH
Q 012442 414 VRRFAEEM 421 (463)
Q Consensus 414 a~~~~~~m 421 (463)
|.++...-
T Consensus 1045 Alrva~~~ 1052 (1265)
T KOG1920|consen 1045 ALRVASKA 1052 (1265)
T ss_pred HHHHHHhc
Confidence 77665544
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.01 E-value=1.2 Score=39.90 Aligned_cols=231 Identities=10% Similarity=-0.015 Sum_probs=148.9
Q ss_pred HHhcCChHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc---CCC---CCHHHHHHHHHHHH
Q 012442 157 YCGAGKYDEAVMSFDVMSMH--GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK---IVD---PDGDSFAILLEGWE 228 (463)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~~---~~~~~~~~l~~~~~ 228 (463)
+....+.++|+..|.+-+.. ...-.-.++-.+..+.++. |.+++++..--...+ ... .--..|..+.+++-
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~-g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEM-GRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999988887653 1122234566777888888 888887665332211 111 12345666777777
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCch--HhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-----CCHHHHHHHHHHHHH
Q 012442 229 KEGNVEEANKTFGEMVERFEWNPEH--VLAYETFLITLIRGKQVDEALKFLRVMKGENCF-----PTLKFFSNALDILVK 301 (463)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~ll~~~~~ 301 (463)
+.-++.+++.+-+.-....|..|.. .....++..++...+.++++++.|+...+.--. ....++..|-..|.+
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 7777777777776655444444411 123445667777778999999999987553211 223678899999999
Q ss_pred cCCHhHHHHHHHHH---HHhcCCCCCHHHHHHHH-----HHHHHcCCHhHHHHHHHHHHH----CCCC-CCHHHHHHHHH
Q 012442 302 LNDSTHAVQLWDIM---MVFHGAFPDSLTYNMIF-----ECLIKNKRVHEVEKFFHEMIK----NEWQ-PTPLNCATAIT 368 (463)
Q Consensus 302 ~g~~~~a~~~~~~~---~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~ 368 (463)
..|+++|.-+..+. ....++..-..-|..++ -++-..|....|.+.-++..+ .|-+ ........+.+
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 99999998876654 23333332223344333 345567888888888887654 4411 12334557788
Q ss_pred HHhCCCCHHHHHHHHHHHHH
Q 012442 369 MLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 369 ~~~~~g~~~~a~~~~~~~~~ 388 (463)
.|-..|+.+.|+.-|+....
T Consensus 255 IyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccHhHHHHHHHHHHH
Confidence 89999999999888887654
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.99 E-value=3.6 Score=39.60 Aligned_cols=119 Identities=17% Similarity=0.106 Sum_probs=78.1
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHHcCCHh
Q 012442 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN---CFPTLKFFSNALDILVKLNDST 306 (463)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~g~~~ 306 (463)
..+.+.|.++++.+.++ -|+...-.-.-...+...|++++|++.|++..... .+.....+--+.-.+.-.++++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 46778899999999877 67443333333456677799999999999765321 1222344555666788889999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHH-HHHHcCCH-------hHHHHHHHHHHH
Q 012442 307 HAVQLWDIMMVFHGAFPDSLTYNMIFE-CLIKNKRV-------HEVEKFFHEMIK 353 (463)
Q Consensus 307 ~a~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~-------~~a~~~~~~~~~ 353 (463)
+|.+.|..+.+.... +..+|.-+.. ++...|+. ++|.++|.+...
T Consensus 323 ~A~~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999996654444 3333333332 34456666 888888887643
No 258
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.88 E-value=2.7 Score=37.53 Aligned_cols=132 Identities=16% Similarity=0.206 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH--c----CCHhHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCC-
Q 012442 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVK--L----NDSTHAVQLWDIMMVFHGA--FPDSLTYNMIFECLIKNKR- 340 (463)
Q Consensus 270 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~- 340 (463)
+++...+++.|.+.|+.-+..+|-+....... . ....+|..+|+.|.+.+.. .++...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566777778888877776666553333222 1 2356678888885444443 3455566666543 2222
Q ss_pred ---HhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhC-CCC--HHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 012442 341 ---VHEVEKFFHEMIKNEWQPTPL-NCATAITMLLD-ADE--PEIAIEIWNYILENGILPLEASANELLV 403 (463)
Q Consensus 341 ---~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~-~g~--~~~a~~~~~~~~~~~~~p~~~~~~~li~ 403 (463)
.+.+..+|+.+.+.|+..+.. -+.+-+-+++. ... ..++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 356677888888877655433 23333333332 222 3467788888888888887777766544
No 259
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=4.5 Score=40.03 Aligned_cols=315 Identities=10% Similarity=0.065 Sum_probs=182.1
Q ss_pred CCCCCHHHHH-----HHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHhCCCCc
Q 012442 108 GQRLSPYAWN-----LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKY--DEAVMSFDVMSMHGVEQ 180 (463)
Q Consensus 108 ~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~~ 180 (463)
|++.+..-|. .+|+-+...+.+..|.++-..+......+..+|......+.+..+. +++.+..++=..... -
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~ 505 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-T 505 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-C
Confidence 7777766665 4567778889999999998887655443456777777777776432 233333333222222 3
Q ss_pred CHHHHHHHHHHHHccCCcHHHHHHHHHHhhc-C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc--------
Q 012442 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKK-I----VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF-------- 247 (463)
Q Consensus 181 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------- 247 (463)
....|..+.+..... |+.+.|..+++.=.. + +-.+..-+...+.-+.+.|+.+-...++-.+..+.
T Consensus 506 ~~iSy~~iA~~Ay~~-GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 506 PGISYAAIARRAYQE-GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CceeHHHHHHHHHhc-CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666677 999999998876332 1 11233445566777788888888887777766541
Q ss_pred -CCCCchHhhHHHHHH--------HHHccCCHHHHHHHHH--HHh----hCCCCCCHHHHHHHHHHHHHcCCH-------
Q 012442 248 -EWNPEHVLAYETFLI--------TLIRGKQVDEALKFLR--VMK----GENCFPTLKFFSNALDILVKLNDS------- 305 (463)
Q Consensus 248 -~~~p~~~~~~~~li~--------~~~~~~~~~~a~~~~~--~m~----~~~~~~~~~~~~~ll~~~~~~g~~------- 305 (463)
...|.....|.-++. .+.+.++-.++...|. ... ..|..|+ .....+.|.+....
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHH
Confidence 112211112222221 0111111112221111 100 0122222 22233444443331
Q ss_pred ---hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHH
Q 012442 306 ---THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382 (463)
Q Consensus 306 ---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 382 (463)
.+-.++.+.+-.+.|..-...+.+--+..+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 11222222222233322223345555666777899999998887775 68889999999999999999887776
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 383 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
-+... .+.-|.-++.+|.+.|+.++|.+++-+.... + -...+|.+.|+.
T Consensus 738 Akskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---~------ekv~ay~~~~~~ 786 (829)
T KOG2280|consen 738 AKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---Q------EKVKAYLRVGDV 786 (829)
T ss_pred HhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---H------HHHHHHHHhccH
Confidence 54432 2457888999999999999999998775321 1 345566666666
No 260
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.84 E-value=6.1 Score=41.39 Aligned_cols=33 Identities=6% Similarity=0.049 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHH
Q 012442 108 GQRLSPYAWNLMVDVLGKNG--RFEQMWNAVRVMKE 141 (463)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~ 141 (463)
...|+ .-.-.+|..|.+.+ .+++|+....+...
T Consensus 786 ~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 786 RRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34455 44557778888887 77777777777664
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.81 E-value=0.7 Score=34.72 Aligned_cols=89 Identities=16% Similarity=0.031 Sum_probs=48.0
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCCChhh---HHHHHHHHHcCCC
Q 012442 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN-GILPLEAS---ANELLVGLRNLGR 410 (463)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~---~~~li~~~~~~g~ 410 (463)
++..|+.+.|++.|.+.+..- +-+...||.-..++--+|+.++|++-+++..+. |-. .... |..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 445566666666666665542 445566666666666666666666666665542 211 1111 1112224555666
Q ss_pred HHHHHHHHHHHHHCC
Q 012442 411 LSDVRRFAEEMLNRR 425 (463)
Q Consensus 411 ~~~a~~~~~~m~~~~ 425 (463)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666655555
No 262
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=5 Score=40.27 Aligned_cols=73 Identities=7% Similarity=0.006 Sum_probs=38.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHH----HHHCCCccCHHHHHHHHHHHH
Q 012442 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE----MLNRRILIYEVTMHKLKKAFY 441 (463)
Q Consensus 366 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~~~~~~~~~ll~~~~ 441 (463)
++..+.+..+.+.+..+.+..-+. ++..|..++..+++.+.++...++..+ +......|- ..+++.++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ipp----l~VL~~La 782 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPP----LHVLQILA 782 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCH----HHHHHHHh
Confidence 444455555555555554443322 566888888888887765555444443 333333333 23445555
Q ss_pred Hhcch
Q 012442 442 NESRS 446 (463)
Q Consensus 442 ~~g~~ 446 (463)
+.+..
T Consensus 783 kn~~l 787 (933)
T KOG2114|consen 783 KNGTL 787 (933)
T ss_pred cCCce
Confidence 55544
No 263
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.76 E-value=1.7 Score=34.72 Aligned_cols=115 Identities=18% Similarity=0.240 Sum_probs=50.1
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCCCh
Q 012442 317 VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN-GILPLE 395 (463)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~ 395 (463)
...++.|+...+..+++.+.+.|++.. +..+++.++-+|.......+-.+.. ....+.++--.|.++ +
T Consensus 21 ~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~----- 89 (167)
T PF07035_consen 21 NQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLG----- 89 (167)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-----
Confidence 344555555555555555555555332 3333334444444443333322221 222233332233221 1
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 396 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
..+..+++.+...|++-+|+++.+..... +......++++..+.++.
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~ 136 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDD 136 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCH
Confidence 13444555555666666666655543211 112234455555555555
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.74 E-value=1.3 Score=33.32 Aligned_cols=88 Identities=18% Similarity=0.078 Sum_probs=67.5
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CC---HHHHHHHHHHHHhcCChHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LS---LPTFASIFDSYCGAGKYDE 165 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~---~~~~~~li~~~~~~g~~~~ 165 (463)
+..|+.+.|++.|.....-.+.+...||.-..++.-.|+.++|++=+++..+..- .. -..|..-...|...|+.+.
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 4578899999999888777778888999999999999999999988888776543 22 2234444456777888888
Q ss_pred HHHHHHHHHhCC
Q 012442 166 AVMSFDVMSMHG 177 (463)
Q Consensus 166 A~~~~~~m~~~g 177 (463)
|..-|+..-+.|
T Consensus 134 AR~DFe~AA~LG 145 (175)
T KOG4555|consen 134 ARADFEAAAQLG 145 (175)
T ss_pred HHHhHHHHHHhC
Confidence 888888877665
No 265
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.74 E-value=0.41 Score=41.74 Aligned_cols=78 Identities=15% Similarity=0.191 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhh-----CCCCCCHHHH
Q 012442 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-----ENCFPTLKFF 292 (463)
Q Consensus 218 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~ 292 (463)
.++..++..+...|+++.+...++++... .|-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~---dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL---DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 45566777778888888888888888654 676777888888888888888888888887754 4666666555
Q ss_pred HHHHHH
Q 012442 293 SNALDI 298 (463)
Q Consensus 293 ~~ll~~ 298 (463)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 444443
No 266
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=2.9 Score=37.16 Aligned_cols=150 Identities=12% Similarity=-0.040 Sum_probs=85.9
Q ss_pred ccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCChHHH
Q 012442 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS----LPTFASIFDSYCGAGKYDEA 166 (463)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~A 166 (463)
..|...+|-..++.+.+.+|.|..+++..=++|.-.|+.+.....++++...--++ ...-..+.-++...|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34555666666666666677777777777777777777777777776665542222 22222333445566777777
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012442 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDP----DGDSFAILLEGWEKEGNVEEANKTFGE 242 (463)
Q Consensus 167 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 242 (463)
++.-++..+.+ +-|.....++...+--. |++.++.++..+-...-.. -..-|-...-.+...+.++.|+++|+.
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~-~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMN-GRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhc-chhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 77776666554 44555555666666556 7777777766654431110 011122233344555777777777764
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.72 E-value=4.7 Score=39.58 Aligned_cols=133 Identities=12% Similarity=0.178 Sum_probs=76.1
Q ss_pred HHHHhccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCC
Q 012442 86 EVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL---SLPTFASIFDSYCGAGK 162 (463)
Q Consensus 86 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~ 162 (463)
+-+...+|++++|.++|-.+.+ .| .-|..+.+.|++-...++++.--. +.. -..+|+.+...++....
T Consensus 741 aei~~~~g~feeaek~yld~dr---rD-----LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~ 811 (1189)
T KOG2041|consen 741 AEISAFYGEFEEAEKLYLDADR---RD-----LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMME 811 (1189)
T ss_pred HhHhhhhcchhHhhhhhhccch---hh-----hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHH
Confidence 3344668999999999876653 22 345566677777777666643111 111 24467777777777777
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012442 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241 (463)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (463)
+++|.+.|..-... ...+.++.+. .++++.+.+.+.+ +.+....-.+..++...|..++|.+.|-
T Consensus 812 We~A~~yY~~~~~~---------e~~~ecly~l-e~f~~LE~la~~L----pe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 812 WEEAAKYYSYCGDT---------ENQIECLYRL-ELFGELEVLARTL----PEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHHHhccch---------HhHHHHHHHH-HhhhhHHHHHHhc----CcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 77777776554311 1234455554 4444444443333 3344445556666666666666665553
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=0.9 Score=45.17 Aligned_cols=243 Identities=12% Similarity=0.093 Sum_probs=124.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH----HHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 012442 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA----ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225 (463)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 225 (463)
...-+..+.+..-++-|+.+-+.- ..|..+...+... +.+. |++++|...|-+-..-+.|. .++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~K-gdf~~A~~qYI~tI~~le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGK-GDFDEATDQYIETIGFLEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHcccCChH-----HHHH
Confidence 445566666666667666654433 2333333333333 3344 77777777776655444443 2445
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 012442 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305 (463)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 305 (463)
-|.....+.+-..+++.+.+. |+.- ...-+.|+.+|.+.++.++-.++.+... .|.. ..-+...+..+.+.+-.
T Consensus 406 kfLdaq~IknLt~YLe~L~~~-gla~--~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKK-GLAN--SDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHc-cccc--chhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 556666666666677777664 5543 2345667777777777777666665544 2311 11244456666666666
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhCCCCHHHHHHHH
Q 012442 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL--NCATAITMLLDADEPEIAIEIW 383 (463)
Q Consensus 306 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~ 383 (463)
+.|..+-... .........++ -..+++++|++++..+ +|+.. +.+....-+. ....++-..++
T Consensus 480 ~~a~~LA~k~------~~he~vl~ill---e~~~ny~eAl~yi~sl-----p~~e~l~~l~kyGk~Ll-~h~P~~t~~il 544 (933)
T KOG2114|consen 480 DEAELLATKF------KKHEWVLDILL---EDLHNYEEALRYISSL-----PISELLRTLNKYGKILL-EHDPEETMKIL 544 (933)
T ss_pred HHHHHHHHHh------ccCHHHHHHHH---HHhcCHHHHHHHHhcC-----CHHHHHHHHHHHHHHHH-hhChHHHHHHH
Confidence 6666665541 11223333333 3456778888777765 22211 1111111121 13455555555
Q ss_pred HHHHHcCCCCChhhHHHHH-----HHHHcCCCHHHHHHHHHHHHHC
Q 012442 384 NYILENGILPLEASANELL-----VGLRNLGRLSDVRRFAEEMLNR 424 (463)
Q Consensus 384 ~~~~~~~~~p~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~ 424 (463)
-+.......++.......+ ....-.++++....+++.|.+.
T Consensus 545 i~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~ 590 (933)
T KOG2114|consen 545 IELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEI 590 (933)
T ss_pred HHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhc
Confidence 4444322222222222221 1234456677777777766543
No 269
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.67 E-value=3.7 Score=38.14 Aligned_cols=138 Identities=17% Similarity=0.133 Sum_probs=80.7
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH--HH
Q 012442 122 VLGKNGRFEQMWNAVRVMKEDGVLS------LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA--IC 193 (463)
Q Consensus 122 ~~~~~g~~~~a~~~~~~m~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~ 193 (463)
.+-+++++.+|.++|.++......+ ...-+.++++|.. .+.+.....+..+.+. .| ...|-.+..+ +.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 3556788999999988877654322 2233455566554 4566666666666543 23 2233333332 23
Q ss_pred ccCCcHHHHHHHHHHhhcC---CC------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC----CchH
Q 012442 194 RQENQTSRALEFLNRVKKI---VD------------PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWN----PEHV 254 (463)
Q Consensus 194 ~~~~~~~~a~~~~~~~~~~---~~------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----p~~~ 254 (463)
+. +++.+|.+.+..-.+. .. +|-..=+..++++.+.|.+.++..+++++..+ -+. - +.
T Consensus 91 ~~-k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~-llkrE~~w-~~ 167 (549)
T PF07079_consen 91 KQ-KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER-LLKRECEW-NS 167 (549)
T ss_pred Hh-hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-Hhhhhhcc-cH
Confidence 45 8888888887665442 11 12222345677778888888888888888775 111 2 45
Q ss_pred hhHHHHHHHHHc
Q 012442 255 LAYETFLITLIR 266 (463)
Q Consensus 255 ~~~~~li~~~~~ 266 (463)
.+|+.++-.+.+
T Consensus 168 d~yd~~vlmlsr 179 (549)
T PF07079_consen 168 DMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHHhH
Confidence 567765555544
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.57 E-value=2.6 Score=36.02 Aligned_cols=184 Identities=12% Similarity=0.038 Sum_probs=98.6
Q ss_pred cCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhh
Q 012442 180 QDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV---DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256 (463)
Q Consensus 180 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 256 (463)
|-...|+.-+..+- . |++++|.+.|+.+.... +-...+...++.++.+.+++++|...+++..+.++-.| |+ .
T Consensus 33 p~~~LY~~g~~~L~-~-gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~-n~-d 108 (254)
T COG4105 33 PASELYNEGLTELQ-K-GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP-NA-D 108 (254)
T ss_pred CHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC-Ch-h
Confidence 33444555554443 4 88888888888887633 33455666677788888999999888888887766666 33 3
Q ss_pred HHHHHHHHHcc-------CCHHHHHHHHH---HHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHH
Q 012442 257 YETFLITLIRG-------KQVDEALKFLR---VMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326 (463)
Q Consensus 257 ~~~li~~~~~~-------~~~~~a~~~~~---~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 326 (463)
|-..|.+++.- .|...+.+.|. ++...- |+. .=..+|...+..+ ... =..
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS-------------~Ya~dA~~~i~~~-~d~----LA~ 168 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNS-------------RYAPDAKARIVKL-NDA----LAG 168 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCC-------------cchhhHHHHHHHH-HHH----HHH
Confidence 54445554422 23333333333 333321 211 1111121111110 000 000
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT---PLNCATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
.=..+...|.+.|.+..|..-+++|++. .+-+ ...+-.+..+|...|-.++|.+.-.-+..
T Consensus 169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 169 HEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 1123445566777777777777777765 2222 23344566677777777777766544443
No 271
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.51 E-value=5.4 Score=39.41 Aligned_cols=278 Identities=12% Similarity=0.074 Sum_probs=156.2
Q ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHH--H-HHhcCChHHHHHHHHHHHh-------CCCCcCHHHHHHHHHHHHcc---
Q 012442 129 FEQMWNAVRVMKEDGVLSLPTFASIFD--S-YCGAGKYDEAVMSFDVMSM-------HGVEQDVVAVNSLLSAICRQ--- 195 (463)
Q Consensus 129 ~~~a~~~~~~m~~~~~~~~~~~~~li~--~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~ll~~~~~~--- 195 (463)
...|.++++.....|.........++. + +....+.+.|+..|....+ .| +......+-.+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 467888888888887544333333332 2 4467789999999999876 44 333555666666663
Q ss_pred CC-cHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHH----ccCC
Q 012442 196 EN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEK-EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI----RGKQ 269 (463)
Q Consensus 196 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~----~~~~ 269 (463)
.. +.+.|..++......-.|+.......+..... ..+...|.++|...-+. |..+ ++-.+...|. ...+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~----A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHIL----AIYRLALCYELGLGVERN 379 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChH----HHHHHHHHHHhCCCcCCC
Confidence 02 66778888888776444565555444444433 35678999999998875 5432 2222222222 3357
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHH-HH---HHH----cCCH
Q 012442 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF-EC---LIK----NKRV 341 (463)
Q Consensus 270 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~---~~~----~~~~ 341 (463)
...|..++++..+.| .|...--...+..+.. ++++.+.-.+.. +...|.+- ..+-...+ .. ... ..+.
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~-~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLY-LAELGYEV-AQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHH-HHHhhhhH-HhhHHHHHHHhccccccccccccch
Confidence 889999999998888 3332222233333444 666666666665 34444321 11111111 11 111 1245
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCCCChhhHHH--HHH-HHHcCCCHHHH
Q 012442 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDA----DEPEIAIEIWNYILENGILPLEASANE--LLV-GLRNLGRLSDV 414 (463)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~--li~-~~~~~g~~~~a 414 (463)
+.+..++.+....| +......|-..|... .+.+.|...+......+ ....||. +.. +..-.+ +..|
T Consensus 456 ~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a 528 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLA 528 (552)
T ss_pred hHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHH
Confidence 66667777766665 455555555555433 34667777776666554 2233331 111 222233 6667
Q ss_pred HHHHHHHHHCC
Q 012442 415 RRFAEEMLNRR 425 (463)
Q Consensus 415 ~~~~~~m~~~~ 425 (463)
.+++++..+.+
T Consensus 529 ~~~~~~~~~~~ 539 (552)
T KOG1550|consen 529 KRYYDQASEED 539 (552)
T ss_pred HHHHHHHHhcC
Confidence 77777666543
No 272
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.27 E-value=2.9 Score=35.28 Aligned_cols=203 Identities=19% Similarity=0.088 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012442 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296 (463)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 296 (463)
...+......+...+++..+...+...... ...+.....+......+...+++..+...+.........+ ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 136 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLA 136 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHH
Confidence 344445555555555555555555554321 1122233444455555555555556666665555433222 11111122
Q ss_pred H-HHHHcCCHhHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhC
Q 012442 297 D-ILVKLNDSTHAVQLWDIMMVFHGA--FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP-TPLNCATAITMLLD 372 (463)
Q Consensus 297 ~-~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 372 (463)
. .+...|+++.|...+..... ... ......+......+...++.+.+...+.+..... .. ....+..+...+..
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 137 LGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHH
Confidence 2 56666666666666666422 111 1122333333333555667777777777776653 23 35666666667777
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 012442 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424 (463)
Q Consensus 373 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 424 (463)
.++.+.|...+......... ....+..+...+...|.++++...+.+....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777776653211 1233444444444556677777777666554
No 273
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.19 E-value=1.8 Score=32.69 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 012442 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW 356 (463)
Q Consensus 291 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 356 (463)
.+...+......|+-+.-.+++..+++ .-.+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344445555555666655555555332 1234455555555666666666666666666665553
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.99 E-value=2.5 Score=33.42 Aligned_cols=71 Identities=8% Similarity=-0.128 Sum_probs=42.8
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 123 LGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 123 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
-.+.++.+.+..++..+.-..+.....-..-...+.+.|++.+|+++|+++... .|.......|+..|...
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYA 90 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHH
Confidence 345567777777777777666543333333344456777777777777777654 34444455555555544
No 275
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.69 E-value=4.8 Score=35.74 Aligned_cols=164 Identities=12% Similarity=0.051 Sum_probs=82.4
Q ss_pred hHHHHHHHHHccCCHH---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcC-CCCCHHHHHHH
Q 012442 256 AYETFLITLIRGKQVD---EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG-AFPDSLTYNMI 331 (463)
Q Consensus 256 ~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l 331 (463)
+...++.+|...+..+ +|.++++.+.... +-...++..-+..+.+.++.+.+.+++..|+.... ...+.......
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4566677777766544 4555665664432 22245555666666667888888888888655443 22333333333
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHH-HHH-HHHH---HHhCCCC------HHHHHHHHHHHHH-cCCCCChhhHH
Q 012442 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPL-NCA-TAIT---MLLDADE------PEIAIEIWNYILE-NGILPLEASAN 399 (463)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~-~li~---~~~~~g~------~~~a~~~~~~~~~-~~~~p~~~~~~ 399 (463)
+.-+.... ...|...+..++...+.|... ... .++. ...+.++ ++...++++.+.+ .+.+.+..+-.
T Consensus 165 i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 33334333 345666666665544455443 111 1111 1112111 4444444553332 22222332222
Q ss_pred HH-------HHHHHcCCCHHHHHHHHHHH
Q 012442 400 EL-------LVGLRNLGRLSDVRRFAEEM 421 (463)
Q Consensus 400 ~l-------i~~~~~~g~~~~a~~~~~~m 421 (463)
++ ...+.+.+++++|.++|+-.
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 22 23456788888888888753
No 276
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.57 E-value=4 Score=34.43 Aligned_cols=223 Identities=16% Similarity=0.104 Sum_probs=130.1
Q ss_pred CChHHHHHHHHHHHhCCCC-cCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012442 161 GKYDEAVMSFDVMSMHGVE-QDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEAN 237 (463)
Q Consensus 161 g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~ 237 (463)
+....+...+......... .....+......+... +.+..+...+..... ........+......+...+++..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKL-GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHc-ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 4445555555555443211 1234555555555555 666666666666554 34455556666666666677777777
Q ss_pred HHHHHHHHhcCCCCchHhhHHHHHH-HHHccCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 238 KTFGEMVERFEWNPEHVLAYETFLI-TLIRGKQVDEALKFLRVMKGENC--FPTLKFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
+.+...... .+.+......... .+...|+++.+...+.+...... ......+......+...++.+.+...+..
T Consensus 116 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALAL---DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcC---CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 777776542 2211122223333 67777777777777777754221 11233344444446677788888888877
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 012442 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389 (463)
Q Consensus 315 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 389 (463)
........ ....+..+...+...++++.+...+....... +.....+..+...+...+..+.+...+.+..+.
T Consensus 193 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 193 ALKLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 54422111 35566677777777778888888888887763 222444444555555666788888888777764
No 277
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.52 E-value=4.7 Score=35.14 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=52.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH-----HCCCccCHHHHH
Q 012442 362 NCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEML-----NRRILIYEVTMH 434 (463)
Q Consensus 362 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~~~~ 434 (463)
+++.....|..+|.+.+|.++.+.....+ +.+...|-.|+..+...|+--.|.+-++.+. +.|+..+...++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 34556677888889999998888888754 4566777888888888888777777777664 346666655443
No 278
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.52 E-value=2.7 Score=32.64 Aligned_cols=52 Identities=10% Similarity=-0.131 Sum_probs=33.5
Q ss_pred hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012442 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176 (463)
Q Consensus 125 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (463)
..++++++..+++.|.-..+.....-..-...+...|++++|.++|+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 4677777777777777665533332223334456777888888888877765
No 279
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.35 E-value=9.1 Score=37.89 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHHcC
Q 012442 375 EPEIAIEIWNYILENG 390 (463)
Q Consensus 375 ~~~~a~~~~~~~~~~~ 390 (463)
+.+.|..++++..+.|
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 4444555555544444
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.19 E-value=2.3 Score=34.72 Aligned_cols=97 Identities=12% Similarity=0.169 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHccCCcHHHHHHHHHHhhc--CCCCCHHHHH--
Q 012442 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD--VVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFA-- 221 (463)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~-- 221 (463)
..+..+...|.+.|+.+.|++.|.++.+....+. ...+-.+|...... +++..+.....+... ....|...-+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~-~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFF-GDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3566667777777777777777777665432222 23345556666666 777777766666554 1111111111
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHHHH
Q 012442 222 ILLE--GWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 222 ~l~~--~~~~~g~~~~a~~~~~~~~~ 245 (463)
.... .+...+++..|-+.|-+...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 1111 12345677777777766543
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.12 E-value=1.9 Score=35.21 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch-HhhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 012442 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH-VLAYETFLITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 218 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (463)
..+..+...|++.|+.+.|.+.|.++.+. ...+.. ...+-.+|......+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556666777777777777777776653 333311 23455566666666777666666665543
No 282
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.06 E-value=3.8 Score=32.78 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=11.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 012442 257 YETFLITLIRGKQVDEALKFLRV 279 (463)
Q Consensus 257 ~~~li~~~~~~~~~~~a~~~~~~ 279 (463)
+..++..+...|++-+|+++.+.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 33344444555555555555444
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.77 E-value=4.2 Score=32.48 Aligned_cols=138 Identities=12% Similarity=0.083 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHH-HHHHHH
Q 012442 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV-AVNSLL 189 (463)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll 189 (463)
...|..-++ +++.+..++|+.-|..+.+.|.-+ .-..-.........|+...|...|+++-...-.|-.. ...-|=
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 334444333 345677788888888887777543 2222223344566778888888888776543233222 111111
Q ss_pred H--HHHccCCcHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch
Q 012442 190 S--AICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH 253 (463)
Q Consensus 190 ~--~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 253 (463)
. .+... |.++....-.+-+.. +.+.-...-..|.-+-.+.|++.+|.+.|.++... ...|.+
T Consensus 138 aa~lLvD~-gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D-a~aprn 202 (221)
T COG4649 138 AAYLLVDN-GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND-AQAPRN 202 (221)
T ss_pred HHHHHhcc-ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc-ccCcHH
Confidence 1 23345 666666666665544 44444455556666666777777777777777663 444443
No 284
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.63 E-value=12 Score=37.42 Aligned_cols=155 Identities=14% Similarity=0.120 Sum_probs=87.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC
Q 012442 120 VDVLGKNGRFEQMWNAVRVMKEDGV--LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197 (463)
Q Consensus 120 i~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 197 (463)
++-+.+.+.+++|++..+.....-. .....+...|..+.-.|++++|-...-.|. .-+..-|.--+..+... +
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~-~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAEL-D 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccc-c
Confidence 4556677888888888776544322 145678888999999999999998888887 34455555555555544 3
Q ss_pred cHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------------HHHhcCCCCchHhhHHHHHH
Q 012442 198 QTSRALEFLNRVKKIV-DPDGDSFAILLEGWEKEGNVEEANKTFGE--------------MVERFEWNPEHVLAYETFLI 262 (463)
Q Consensus 198 ~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------------~~~~~~~~p~~~~~~~~li~ 262 (463)
+... ++.-+..+. ..+..+|..++..+.. .+...-.++..+ ...+..-...+...-..|..
T Consensus 438 ~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~ 513 (846)
T KOG2066|consen 438 QLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAH 513 (846)
T ss_pred ccch---hhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHH
Confidence 3222 222222221 1345566666666655 222211111111 10000000011223445778
Q ss_pred HHHccCCHHHHHHHHHHHhhC
Q 012442 263 TLIRGKQVDEALKFLRVMKGE 283 (463)
Q Consensus 263 ~~~~~~~~~~a~~~~~~m~~~ 283 (463)
.|...+++..|++++-..+..
T Consensus 514 LYl~d~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQDK 534 (846)
T ss_pred HHHHccChHHHHHHHHhccCh
Confidence 888889999999888776543
No 285
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.49 E-value=1.9 Score=30.88 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 012442 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224 (463)
Q Consensus 165 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 224 (463)
+..+-++.+....+.|+.....+.+++|-+. +++..|.++|+.++.+.......|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRv-ND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRV-NDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 5666677777777778888888888888888 8888888888887764433333444443
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.49 E-value=4.4 Score=32.03 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=27.7
Q ss_pred HHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 012442 300 VKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354 (463)
Q Consensus 300 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 354 (463)
.+.++.+++..++..+.....-.+...++...+ +...|++.+|.++|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 345566666666666433222223333343333 45566666666666666544
No 287
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.43 E-value=10 Score=36.02 Aligned_cols=181 Identities=11% Similarity=0.086 Sum_probs=127.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 012442 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187 (463)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 187 (463)
..+.|-...-+++..++.+....-...+..+|..-|- +...|..++++|..+ ..+.-..+|+++.+.. -|......
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~R 136 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGR 136 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHH
Confidence 4466777788899999999988888888888887764 556688999999988 5677888999888764 34444444
Q ss_pred HHHHHHccCCcHHHHHHHHHHhhcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHH
Q 012442 188 LLSAICRQENQTSRALEFLNRVKKIVDP------DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261 (463)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li 261 (463)
-+..+... ++.+.+..+|..+...+-| -...|..+...- ..+.|....+...+....|..- -...+.-+-
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~-~~Vl~qdv~ 212 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGR-GSVLMQDVY 212 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccch-HHHHHHHHH
Confidence 45555556 8888888888887653222 123555555432 4567778888888877656555 455677777
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012442 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297 (463)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 297 (463)
.-|....++++|++++..+.+.+ .-|...-..++.
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 88888899999999999877765 224444444443
No 288
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.36 E-value=1.4 Score=42.21 Aligned_cols=150 Identities=9% Similarity=0.052 Sum_probs=89.0
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 012442 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308 (463)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 308 (463)
-.|+++.|..++..+.+ ...+.++.-+-+.|..++|+++- +|... -.....+.|+++.|
T Consensus 598 mrrd~~~a~~vLp~I~k---------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA 656 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---------EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIA 656 (794)
T ss_pred hhccccccccccccCch---------hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHH
Confidence 45666666554443321 13445555566666666665432 22211 11234467778887
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
.++..+. .+..-|..|.++....+++..|.+.|.+... |..|+-.+...|+.+....+-....+
T Consensus 657 ~~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 657 FDLAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred HHHHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 7776652 3556677888888888888888887777654 33566666667776666666666666
Q ss_pred cCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 012442 389 NGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421 (463)
Q Consensus 389 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 421 (463)
.|. .|.-.-+|...|+++++.+++.+-
T Consensus 721 ~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 721 QGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 552 233334566778888777776553
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.33 E-value=4.9 Score=32.14 Aligned_cols=131 Identities=15% Similarity=0.129 Sum_probs=93.5
Q ss_pred CHHHHHHHHH-hccCCchHHHHHHHHhcC-CCCCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCHH---HHHH
Q 012442 80 TPDLVHEVLQ-LSYDSPSSAVDFFRWAGR-GQRLSPY-AWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLP---TFAS 152 (463)
Q Consensus 80 ~~~~~~~~l~-~~~~~~~~a~~~~~~~~~-~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~---~~~~ 152 (463)
+-+.|.+.|. +..+..++|+.-|..+.+ |...-++ .--.........|+...|...|+++-.... |-.. .---
T Consensus 58 sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 58 SGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred chHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 4566777777 667899999999998876 4433222 233445567888999999999999876653 3211 1111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc
Q 012442 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211 (463)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 211 (463)
-.-.+...|.++....-.+-+...|-+.....-..|--+-.+. |++..|.+.|..+.+
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ka-gd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA-GDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc-cchHHHHHHHHHHHc
Confidence 2234677899999999888887665445555566777777788 999999999999876
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.22 E-value=0.37 Score=27.10 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 012442 220 FAILLEGWEKEGNVEEANKTFGEM 243 (463)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~~ 243 (463)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556666677777777777777663
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.95 E-value=0.28 Score=27.22 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=10.9
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHH
Q 012442 109 QRLSPYAWNLMVDVLGKNGRFEQM 132 (463)
Q Consensus 109 ~~~~~~~~~~li~~~~~~g~~~~a 132 (463)
.|.|..+|+.+...|...|++++|
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444444
No 292
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.94 E-value=0.16 Score=28.20 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=28.7
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHH
Q 012442 136 VRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168 (463)
Q Consensus 136 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (463)
|++..+..+.+..+|+.+...|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 566677788899999999999999999999863
No 293
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.89 E-value=12 Score=35.57 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=23.3
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 262 ITLIRGKQVDEALKFLRVMKGENCF-PTLKFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
.++-+.|+.++|.+.|++|.+..-. ........|+.++...+.+.++..++.+
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3333445555555555555433211 1122344445555555555555555444
No 294
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.85 E-value=9.1 Score=34.24 Aligned_cols=131 Identities=15% Similarity=0.277 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc--c---CCcHHHHHHHHHHhhcC----CCCCHHHHHHHHHHHHhcCC-
Q 012442 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR--Q---ENQTSRALEFLNRVKKI----VDPDGDSFAILLEGWEKEGN- 232 (463)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~---~~~~~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~- 232 (463)
+++...+++.|.+.|+.-+..+|-+....... . .....++..+|+.|++. -.++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788888888888887776653333322 1 02355678888888872 23445555555443 3333
Q ss_pred ---HHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCC---HHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012442 233 ---VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTLKFFSNAL 296 (463)
Q Consensus 233 ---~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll 296 (463)
.+.++++|+.+.+. |+...|..-+.+-+-++..... ...+.++++.+.+.|++.....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 35567777777773 7766554333333333333321 346777788888888777666665543
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.73 E-value=0.45 Score=26.75 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=10.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHH
Q 012442 116 WNLMVDVLGKNGRFEQMWNAVRV 138 (463)
Q Consensus 116 ~~~li~~~~~~g~~~~a~~~~~~ 138 (463)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444555555555555555544
No 296
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.68 E-value=3.6 Score=29.19 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 012442 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224 (463)
Q Consensus 162 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 224 (463)
+.-++.+-++.+....+.|+.....+-+++|-+. +|+..|.++|+.++.+...+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRv-ND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRV-NDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 4456667777777777788888888888888888 8888888888877753333333444433
No 297
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.51 E-value=1.8 Score=37.99 Aligned_cols=107 Identities=7% Similarity=-0.002 Sum_probs=68.6
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 012442 282 GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHG--AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359 (463)
Q Consensus 282 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (463)
..|......+...++..-....++++++.++-++..... ..++. +-.++++.+. .-++++++.++..=++.|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence 344555566666666666666778888877766321111 11221 1122233222 3457788888888888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 012442 360 PLNCATAITMLLDADEPEIAIEIWNYILENG 390 (463)
Q Consensus 360 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 390 (463)
..+++.+|+.+.+.+++.+|..+...|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888888888877776543
No 298
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.31 E-value=13 Score=34.97 Aligned_cols=112 Identities=9% Similarity=-0.008 Sum_probs=92.9
Q ss_pred hhHHHHHhhCCCCCCHHHHHHHHHhccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 012442 66 DDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL 145 (463)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 145 (463)
.++.+.++...-.|+-..+...+....|.++.+.....-+.........+...+++..-..|++++|...-+-|....+.
T Consensus 310 ~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie 389 (831)
T PRK15180 310 QQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE 389 (831)
T ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC
Confidence 46888888888888888888888888899999999988776666667778899999999999999999999999988887
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 012442 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177 (463)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 177 (463)
+++.........-..|-++++...|+++....
T Consensus 390 ~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 390 DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 77776666666667788899999999887543
No 299
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.79 E-value=36 Score=39.09 Aligned_cols=145 Identities=8% Similarity=0.042 Sum_probs=89.1
Q ss_pred hccCCchHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHH
Q 012442 90 LSYDSPSSAVDFFRWAGR---GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 166 (463)
...+.+.+|+..++.-.. ........|-.+...|+.-+++|....+...-.. .++ ...-|-.....|+++.|
T Consensus 1394 frc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a--~~s---l~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1394 FRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA--DPS---LYQQILEHEASGNWADA 1468 (2382)
T ss_pred HhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc--Ccc---HHHHHHHHHhhccHHHH
Confidence 345677777777776211 1112223344444488888888887777664111 122 33445556677899999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHH
Q 012442 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL-LEGWEKEGNVEEANKTFG 241 (463)
Q Consensus 167 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~ 241 (463)
...|+.+.+.+ ++...+++.++...... |.++..+-..+-......+....|+++ +.+--+.+++|.......
T Consensus 1469 ~~Cye~~~q~~-p~~~~~~~g~l~sml~~-~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1469 AACYERLIQKD-PDKEKHHSGVLKSMLAI-QHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHhhcCC-CccccchhhHHHhhhcc-cchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999988764 34466777777666666 777777776666655555555555544 344456777777766655
No 300
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.73 E-value=11 Score=33.09 Aligned_cols=117 Identities=12% Similarity=0.107 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHcc-C-CHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 012442 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG-K-QVDEALKFLRVMK-GENCFPTLKFFSNALDILVKLNDSTHA 308 (463)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~g~~~~a 308 (463)
.+.+|+++|+....+..+.- |......+++..... + ....-.++.+-+. +.|-.++..+...++..+++.+++.+-
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~-d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIF-DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHhhccCcccceee-ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 34556666653221101222 455556666665552 1 1222222222222 223456666677777777777777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 012442 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349 (463)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 349 (463)
.++++......+...|...|..+|....+.|+..-..++..
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 77777643333445566677777777777777654444443
No 301
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.68 E-value=2.6 Score=37.09 Aligned_cols=128 Identities=16% Similarity=0.262 Sum_probs=86.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--------cCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC---CCCC--H
Q 012442 223 LLEGWEKEGNVEEANKTFGEMVER--------FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN---CFPT--L 289 (463)
Q Consensus 223 l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~--~ 289 (463)
|.+.|.....|+.-....-.+-.. .+-.|-...+...++..-....+++.++..+-++...- ..++ .
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~ 104 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI 104 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH
Confidence 556666666665544333233221 01123244455666666666788999999998886542 1222 2
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 012442 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355 (463)
Q Consensus 290 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 355 (463)
+++..++ -.-+.++++.++.. -...|+-||..+++.+|+.+.+.+++.+|..+...|....
T Consensus 105 ~~~irll----lky~pq~~i~~l~n-pIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 105 HTWIRLL----LKYDPQKAIYTLVN-PIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHH----HccChHHHHHHHhC-cchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3333333 33467789988888 7789999999999999999999999999999988887765
No 302
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.60 E-value=9.1 Score=31.95 Aligned_cols=83 Identities=14% Similarity=-0.004 Sum_probs=53.9
Q ss_pred CChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHH
Q 012442 127 GRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206 (463)
Q Consensus 127 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 206 (463)
|-..-|.-=|.......+.-+.+||-+.-.+...|+++.|.+.|+...+....-+-...|.-|..|. . |++..|.+-|
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~-gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-G-GRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee-c-CchHhhHHHH
Confidence 3334444444444455555577899999999999999999999999987542222223333333333 3 8888888877
Q ss_pred HHhhc
Q 012442 207 NRVKK 211 (463)
Q Consensus 207 ~~~~~ 211 (463)
...-+
T Consensus 157 ~~fYQ 161 (297)
T COG4785 157 LAFYQ 161 (297)
T ss_pred HHHHh
Confidence 76655
No 303
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.35 E-value=3.8 Score=29.39 Aligned_cols=60 Identities=23% Similarity=0.252 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 012442 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333 (463)
Q Consensus 272 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 333 (463)
+..+-+..+....+.|++.+..+.+.+|-+.+++..|.++|+.+..+.+...+ .|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHHH
Confidence 55666677777788888888888999999999999999999886555544333 5665554
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.94 E-value=1.2 Score=24.31 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012442 218 DSFAILLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 218 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
.+|..+..+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3455666666666666666666666654
No 305
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.79 E-value=0.051 Score=42.69 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=20.8
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHH
Q 012442 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIW 383 (463)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 383 (463)
+.+.+.++....+++.+...+...+....+.++..|++.++.++..+++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3334444444444444444333333444444444444444444444433
No 306
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.70 E-value=3.6 Score=33.87 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=46.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHhcCC
Q 012442 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK----IVDPDGDSFAILLEGWEKEGN 232 (463)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~ 232 (463)
..+.|+ +.|.+.|-.+...+.--++.....|...|. . .+.++++.++....+ +..+|+..+.+|+..|.+.|+
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-K-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-c-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 344444 566677767766664444444444444444 3 667777777666543 335667777777777777777
Q ss_pred HHHH
Q 012442 233 VEEA 236 (463)
Q Consensus 233 ~~~a 236 (463)
++.|
T Consensus 194 ~e~A 197 (203)
T PF11207_consen 194 YEQA 197 (203)
T ss_pred hhhh
Confidence 6665
No 307
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.60 E-value=16 Score=33.25 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=15.7
Q ss_pred HHHHHcCCHhHHHHHHHHHHHhcCCCCC
Q 012442 297 DILVKLNDSTHAVQLWDIMMVFHGAFPD 324 (463)
Q Consensus 297 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 324 (463)
.....+|..+.|..+++.++...=..|.
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 3344566666666666665554444444
No 308
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.32 E-value=22 Score=34.51 Aligned_cols=307 Identities=9% Similarity=0.052 Sum_probs=180.5
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 012442 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188 (463)
Q Consensus 109 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 188 (463)
...+...|+.+|.---.....+.+..++..+...-|.--.-|......=.+.|..+.+.++|++-+. |++.+...|...
T Consensus 41 ~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 41 DSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred chhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 3455667777777666666677788888888877665566788888888899999999999999885 467788888888
Q ss_pred HHHHHccCCcHHHHHHHHHHhhc--CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHH
Q 012442 189 LSAICRQENQTSRALEFLNRVKK--IV-DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265 (463)
Q Consensus 189 l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~ 265 (463)
+.-+....|+.+.....|+.... |. -.....|...|..-..++++....++|+...+- | ...++..-.-|.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P--~~~~~~~f~~f~ 193 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----P--LHQLNRHFDRFK 193 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----h--hhHhHHHHHHHH
Confidence 88777776999999999999877 33 245677888999889999999999999999874 3 234444443333
Q ss_pred cc---------CCHHHHHHHHHHHhhC---C-CCCCHHHH------------------HHHHHH-------HHHcCCHhH
Q 012442 266 RG---------KQVDEALKFLRVMKGE---N-CFPTLKFF------------------SNALDI-------LVKLNDSTH 307 (463)
Q Consensus 266 ~~---------~~~~~a~~~~~~m~~~---~-~~~~~~~~------------------~~ll~~-------~~~~g~~~~ 307 (463)
+. ...+++.++-...... . ........ +.+-.. +...-....
T Consensus 194 ~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~ 273 (577)
T KOG1258|consen 194 QLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEE 273 (577)
T ss_pred HHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 22 3445555544443321 0 00001111 111111 111111112
Q ss_pred HHHHHHHHHHhc--CC----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHH
Q 012442 308 AVQLWDIMMVFH--GA----FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIE 381 (463)
Q Consensus 308 a~~~~~~~~~~~--~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 381 (463)
....|+...+.. .+ .++..+|...+.--...|+.+.+.-+|++..-- +..-...|--.+.-....|+.+-|..
T Consensus 274 kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~ 352 (577)
T KOG1258|consen 274 KRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANN 352 (577)
T ss_pred HHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHH
Confidence 222222211100 01 224567777777777888888888887776532 11122223333333333466666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHH-HcCCCHHHHHHHHHHHHHC
Q 012442 382 IWNYILENGILPLEASANELLVGL-RNLGRLSDVRRFAEEMLNR 424 (463)
Q Consensus 382 ~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~ 424 (463)
++....+--. +.......+-..+ -..|+++.|..+++.+.+.
T Consensus 353 ~~~~~~~i~~-k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 353 VLARACKIHV-KKTPIIHLLEARFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHHhhhhhcC-CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Confidence 6555544321 1211112122222 2345777777777766554
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.27 E-value=1.4 Score=23.97 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012442 219 SFAILLEGWEKEGNVEEANKTFGEMVER 246 (463)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 246 (463)
.|..+...+.+.|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555566666666666666666666543
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.87 E-value=4.9 Score=28.53 Aligned_cols=63 Identities=24% Similarity=0.223 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 012442 269 QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFE 333 (463)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 333 (463)
+.=++.+-+..+....+.|+.....+.+++|-+.+++..|.++|+.+..+.|. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 33456666777777778888888888888888888888888888874333332 3445655553
No 311
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=88.87 E-value=20 Score=33.45 Aligned_cols=93 Identities=12% Similarity=0.133 Sum_probs=58.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhc
Q 012442 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444 (463)
Q Consensus 365 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 444 (463)
.|+.-|...|++.+|....+++--- +.....++.+++.+..+.|+-+..+.++++.-..|+ .|.+.+-++|.+-.
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~RV~ 588 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFERVY 588 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhhhh
Confidence 5667777777777777776654211 122345777888888888888777788877766665 45555666665543
Q ss_pred ch----------hhhHHHHHHHHHhhcC
Q 012442 445 RS----------MRDIFDSLERRCKTSQ 462 (463)
Q Consensus 445 ~~----------a~~~~~~~~~~~~~~~ 462 (463)
+. |.+.++...+..+..+
T Consensus 589 dsl~DlsLDvPna~ekf~~~Ve~~~~~G 616 (645)
T KOG0403|consen 589 DSLPDLSLDVPNAYEKFERYVEECFQNG 616 (645)
T ss_pred ccCcccccCCCcHHHHHHHHHHHHHHcC
Confidence 22 4555666666555544
No 312
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.80 E-value=3.2 Score=34.47 Aligned_cols=76 Identities=9% Similarity=0.065 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHH
Q 012442 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN--CFPTLKFFSNALD 297 (463)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~ 297 (463)
.+..++.+.+.+.++++++..++-++. +|.|...-..++..+|-.|+|++|..-++-.-... ..+...+|..+|.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka---kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA---KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc---CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 445566777888888888888877665 77777788888888999999999888777665432 2233456766665
Q ss_pred H
Q 012442 298 I 298 (463)
Q Consensus 298 ~ 298 (463)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 313
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.14 E-value=13 Score=32.51 Aligned_cols=141 Identities=18% Similarity=0.101 Sum_probs=81.6
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHH-------HHHHHHHHHHcCCHhHHHHHHHHHHH----CCCCCCHHHH
Q 012442 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT-------YNMIFECLIKNKRVHEVEKFFHEMIK----NEWQPTPLNC 363 (463)
Q Consensus 295 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 363 (463)
+.+-..+.+++++|+..+.+ ....|+..+..+ ...+...|...|++...-+......+ ..-+-.....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~-iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKR-ILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHH-HhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 44556677888888888888 455566655443 44556667777777665555544322 2222234445
Q ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHcCCCHHHHHHHH----HHHHHCCCccCHHHH
Q 012442 364 ATAITMLLDA-DEPEIAIEIWNYILENGILPLE-----ASANELLVGLRNLGRLSDVRRFA----EEMLNRRILIYEVTM 433 (463)
Q Consensus 364 ~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~----~~m~~~~~~~~~~~~ 433 (463)
.+|+..+... ..++.-.++.....+.-..-+. ..-..++..+.+.|.+.+|+.+. .++++.+-+++..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 5666665443 4566666666666553222111 12234667777888888887654 445555666666655
Q ss_pred HHH
Q 012442 434 HKL 436 (463)
Q Consensus 434 ~~l 436 (463)
..+
T Consensus 168 hll 170 (421)
T COG5159 168 HLL 170 (421)
T ss_pred hhh
Confidence 544
No 314
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.78 E-value=3.2 Score=33.44 Aligned_cols=85 Identities=13% Similarity=0.143 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHh----cCCCCchHhhHHHHHHHHHccC----C-------HHHHH
Q 012442 213 VDPDGDSFAILLEGWE---KEGNVEEANKTFGEMVER----FEWNPEHVLAYETFLITLIRGK----Q-------VDEAL 274 (463)
Q Consensus 213 ~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~----~~~~p~~~~~~~~li~~~~~~~----~-------~~~a~ 274 (463)
.+.|...++.-..++. +.....++.+++++...+ ..+.|+...++..+.++|...+ + +++|.
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 3445554444333332 233333344444433322 3457766677777777766552 2 33444
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHH
Q 012442 275 KFLRVMKGENCFPTLKFFSNALDIL 299 (463)
Q Consensus 275 ~~~~~m~~~~~~~~~~~~~~ll~~~ 299 (463)
+.|++.... .|+..+|+.-+...
T Consensus 101 ~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 101 EYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHhc--CCCcHHHHHHHHHH
Confidence 444444442 46666666666555
No 315
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.66 E-value=17 Score=31.09 Aligned_cols=26 Identities=8% Similarity=0.121 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Q 012442 115 AWNLMVDVLGKNGRFEQMWNAVRVMK 140 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~a~~~~~~m~ 140 (463)
.|..-..+|....++++|..-+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34444555666677777766665544
No 316
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.55 E-value=1.8 Score=23.69 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 012442 149 TFASIFDSYCGAGKYDEAVMSFDVMSM 175 (463)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (463)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555443
No 317
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.29 E-value=24 Score=32.46 Aligned_cols=63 Identities=14% Similarity=0.059 Sum_probs=36.2
Q ss_pred hHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP---TLKFFSNALDILVKLNDSTHAVQLWDIM 315 (463)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 315 (463)
...+|..+...+.+.|.++.|...+..+...+... +......-....-..|+..+|...++..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44466666666777777777777666665543111 2233333445555666666666666664
No 318
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.27 E-value=1.7 Score=25.03 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012442 218 DSFAILLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 218 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
.+++.|...|...|++++|.+++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666665543
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.91 E-value=7.6 Score=32.06 Aligned_cols=73 Identities=15% Similarity=0.002 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCCCChhhHHHHHHHHHcCCCHHHHH
Q 012442 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE---NGILPLEASANELLVGLRNLGRLSDVR 415 (463)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~a~ 415 (463)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+ .+-.+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 567777777766664445555555555444 4567777777766664 233566677777777777777777664
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.78 E-value=28 Score=32.89 Aligned_cols=119 Identities=7% Similarity=-0.008 Sum_probs=64.3
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHH
Q 012442 124 GKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRAL 203 (463)
Q Consensus 124 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~ 203 (463)
...|+...|-+-+....++.+-++.........+...|+++.+.+.+...... +.....+...+++...+. |+++.|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l-~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGL-ARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhch-hhHHHHH
Confidence 34455555544433333333222222222233345667777777766555432 234455666777777777 7777777
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012442 204 EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244 (463)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (463)
..-+.|...--.+..+........-..|-+|++.-.|+++.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 77777665333344444433334445566777777777664
No 321
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.66 E-value=25 Score=32.03 Aligned_cols=22 Identities=0% Similarity=0.071 Sum_probs=12.5
Q ss_pred HHHHHHcCCCCHHHHHHHHHHH
Q 012442 136 VRVMKEDGVLSLPTFASIFDSY 157 (463)
Q Consensus 136 ~~~m~~~~~~~~~~~~~li~~~ 157 (463)
|++..+.++-|..+|-.++..-
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Q 29 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQ 29 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHH
Confidence 3444455555677777666543
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.38 E-value=2 Score=24.70 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012442 114 YAWNLMVDVLGKNGRFEQMWNAVRVMK 140 (463)
Q Consensus 114 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 140 (463)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555555555555555555555543
No 323
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.37 E-value=17 Score=29.95 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=43.6
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCC
Q 012442 335 LIKNKRVHEVEKFFHEMIKNEWQPT-----PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409 (463)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 409 (463)
+.+.|++++|..-|.+.++.- ++. ...|..-..++.+.+.++.|.+-..+.++.+.. .......-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 344556666666665555541 221 223333444555566666666665555554321 0111111123555666
Q ss_pred CHHHHHHHHHHHHHCC
Q 012442 410 RLSDVRRFAEEMLNRR 425 (463)
Q Consensus 410 ~~~~a~~~~~~m~~~~ 425 (463)
.+++|++=|+++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 6666666666666543
No 324
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.33 E-value=2.5 Score=22.92 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 012442 150 FASIFDSYCGAGKYDEAVMSFDVMSM 175 (463)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (463)
|..+...+.+.|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444555555555555555555443
No 325
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.32 E-value=28 Score=33.04 Aligned_cols=146 Identities=11% Similarity=-0.048 Sum_probs=82.9
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHHHcCCHhHHHHHHHHHHH---CCCCCC-----HHHHHHH
Q 012442 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF-ECLIKNKRVHEVEKFFHEMIK---NEWQPT-----PLNCATA 366 (463)
Q Consensus 296 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l 366 (463)
+.+|....+...+.+-.+.+|...+ |...+..|- +.+.-.|++.+|.+++...-- .|...+ ...||.|
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~---~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQ---DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcC---CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence 3444555555555555555555444 222222221 234456788888877655321 221111 1123555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH-------cCCCCCh-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCcc
Q 012442 367 ITMLLDADEPEIAIEIWNYILE-------NGILPLE-----------ASANELLVGLRNLGRLSDVRRFAEEMLNRRILI 428 (463)
Q Consensus 367 i~~~~~~g~~~~a~~~~~~~~~-------~~~~p~~-----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 428 (463)
...+.+.|.+..+..+|.+..+ .|+.|.. .+||+=+ .|...|+.-.|.+.|.+.... +..
T Consensus 290 GcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v-fh~ 367 (696)
T KOG2471|consen 290 GCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV-FHR 367 (696)
T ss_pred ceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH-Hhc
Confidence 5555666777766666666553 3544422 3444322 466788888898888887654 567
Q ss_pred CHHHHHHHHHHHHHhcch
Q 012442 429 YEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 429 ~~~~~~~ll~~~~~~g~~ 446 (463)
++..|-.|..+|.-..+.
T Consensus 368 nPrlWLRlAEcCima~~~ 385 (696)
T KOG2471|consen 368 NPRLWLRLAECCIMALQK 385 (696)
T ss_pred CcHHHHHHHHHHHHHhhh
Confidence 888888888888765544
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.30 E-value=14 Score=28.83 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=30.8
Q ss_pred HcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 012442 301 KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355 (463)
Q Consensus 301 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 355 (463)
..++.+++..+++.+.....-.+...++...+ +...|++++|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 46666677777666544333333444444444 456677777777777776654
No 327
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=85.19 E-value=14 Score=28.86 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCcCHHHHH
Q 012442 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDG------VLSLPTFASIFDSYCGAGK-YDEAVMSFDVMSMHGVEQDVVAVN 186 (463)
Q Consensus 114 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~ 186 (463)
...|+++......+++.-.+.+++.+.... ..+...|.+++.+.++... ---+..+|+.|.+.+.+.+...|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 346777777777788888888877774432 2455678888888876666 445667788888777788888888
Q ss_pred HHHHHHHcc
Q 012442 187 SLLSAICRQ 195 (463)
Q Consensus 187 ~ll~~~~~~ 195 (463)
.++.++.+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 888887763
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.19 E-value=2.2 Score=22.94 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012442 221 AILLEGWEKEGNVEEANKTFGEMVER 246 (463)
Q Consensus 221 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 246 (463)
-.+..++.+.|++++|.+.|+++.+.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555666677777777777777665
No 329
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.07 E-value=25 Score=30.52 Aligned_cols=265 Identities=13% Similarity=0.132 Sum_probs=152.6
Q ss_pred CCCCCCHHHHHHHHH---hccCCchHHHHHHHHhcC----CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC---C
Q 012442 75 TGIIPTPDLVHEVLQ---LSYDSPSSAVDFFRWAGR----GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG---V 144 (463)
Q Consensus 75 ~~~~~~~~~~~~~l~---~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~ 144 (463)
.+-.|+.+.-+.... .....+++|+.-|+.+.+ ...+.-.+...+|...-+.+++++..+.|.++..-- +
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 345677766666555 335688999999988765 234555677889999999999999999998876421 1
Q ss_pred ---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCcCHH----HHHHHHHHHHccCCcHHHHHHHHHHhhcCCC--
Q 012442 145 ---LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH-GVEQDVV----AVNSLLSAICRQENQTSRALEFLNRVKKIVD-- 214 (463)
Q Consensus 145 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~----~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~-- 214 (463)
-+..+.|.+++......+.+.-.+.++.-++. .-..+.. |-.-|-..|... +++.+..+++.++...++
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~-~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDR-GEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeH-HHHHHHHHHHHHHHHHhccc
Confidence 24567788888777777666655555443211 0011111 223455666666 888888888887754111
Q ss_pred ---C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHH-----HccCCHHHHHHHHHH
Q 012442 215 ---P-------DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL-----IRGKQVDEALKFLRV 279 (463)
Q Consensus 215 ---~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~-----~~~~~~~~a~~~~~~ 279 (463)
. -..+|..=|..|....+-.....+|++...-..-.| .+.. --+|+-| .+.|++++|..-|-+
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP-HPlI-mGvIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP-HPLI-MGVIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC-chHH-HhHHHHcCCccccccchHHHHHhHHHH
Confidence 1 134666777888888888888888887654323334 3322 2333333 345788777543333
Q ss_pred -H---hhCCCCCCHHH---HHHHHHHHHHcCCHhHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 280 -M---KGENCFPTLKF---FSNALDILVKLNDSTHAVQLWDIMMVFHG--AFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350 (463)
Q Consensus 280 -m---~~~~~~~~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (463)
. .+.| .|-..| |-.|..++.+.|- .-|+. ..... -.|.....+.|+.+|-. +++.+-.+++..
T Consensus 257 AFKNYDEsG-spRRttCLKYLVLANMLmkS~i-----NPFDs-QEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 257 AFKNYDESG-SPRRTTCLKYLVLANMLMKSGI-----NPFDS-QEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHhcccccC-CcchhHHHHHHHHHHHHHHcCC-----CCCcc-cccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 3 3444 233333 3344444444431 01111 11111 23456677888888754 445444444433
No 330
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.04 E-value=45 Score=33.58 Aligned_cols=62 Identities=8% Similarity=0.195 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHhC
Q 012442 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK-------YDEAVMSFDVMSMH 176 (463)
Q Consensus 114 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 176 (463)
..| .+|-.|.|+|++++|.++..+...........+...+..|....+ -+....-|++..+.
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 344 466677899999999999866555444444557777777776533 23455555555544
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.52 E-value=49 Score=33.47 Aligned_cols=147 Identities=7% Similarity=0.034 Sum_probs=83.0
Q ss_pred cCCchHHHHHHHHhcCCCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHH
Q 012442 92 YDSPSSAVDFFRWAGRGQRL---SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168 (463)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (463)
.+.+++|++.-+.... ..+ -...+...|..+.-.|++++|-...-.|... +..-|..-+..+...++......
T Consensus 369 ~k~yeeAl~~~k~~~~-~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---~~~eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 369 KKKYEEALDAAKASIG-NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---NAAEWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred hhHHHHHHHHHHhccC-CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc---hHHHHHHHHHHhccccccchhhc
Confidence 3556777776665443 333 3456888999999999999999888887765 44456666666666655443322
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHcc------------CCcHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhcCCH
Q 012442 169 SFDVMSMHGVEQDVVAVNSLLSAICRQ------------ENQTSRALEFLNRVKK---IVDPDGDSFAILLEGWEKEGNV 233 (463)
Q Consensus 169 ~~~~m~~~g~~~~~~~~~~ll~~~~~~------------~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 233 (463)
+ +....-..+...|..+|..+... .++.=.+..+.+.... ...-+...-..|+..|...+++
T Consensus 445 ~---lPt~~~rL~p~vYemvLve~L~~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y 521 (846)
T KOG2066|consen 445 Y---LPTGPPRLKPLVYEMVLVEFLASDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKY 521 (846)
T ss_pred c---CCCCCcccCchHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccCh
Confidence 2 22211122344455555444431 0111111112121111 1112223344589999999999
Q ss_pred HHHHHHHHHHHH
Q 012442 234 EEANKTFGEMVE 245 (463)
Q Consensus 234 ~~a~~~~~~~~~ 245 (463)
.+|.+++-...+
T Consensus 522 ~~Al~~ylklk~ 533 (846)
T KOG2066|consen 522 EKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHhccC
Confidence 999999887754
No 332
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.30 E-value=2.8 Score=24.87 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=13.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHC
Q 012442 401 LLVGLRNLGRLSDVRRFAEEMLNR 424 (463)
Q Consensus 401 li~~~~~~g~~~~a~~~~~~m~~~ 424 (463)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 333
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.08 E-value=0.53 Score=36.85 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=23.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHH
Q 012442 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207 (463)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 207 (463)
+..+.+.+..+.....++.+...+...+....+.++..|++. ++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~-~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKY-DPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCT-TTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhc-CCchHHHHHcc
Confidence 344444444455555555554433334444445555555544 44444444443
No 334
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.89 E-value=30 Score=30.50 Aligned_cols=57 Identities=11% Similarity=0.097 Sum_probs=31.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 012442 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313 (463)
Q Consensus 256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 313 (463)
+++.....|..+|.+.+|.++.+.....+ +.+...+-.++..+...|+--.+.+-++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khye 337 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYE 337 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHH
Confidence 34444455666666666666666665554 4455555566666666666444444433
No 335
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.77 E-value=7.2 Score=29.23 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHH
Q 012442 165 EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAIL 223 (463)
Q Consensus 165 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 223 (463)
+..+.++.+....+.|+......-+++|-+. +|+..|..+|+.++....+....|-.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRv-NDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRV-NDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4556666777777788888888888888888 888888888888877544444444433
No 336
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.59 E-value=12 Score=26.75 Aligned_cols=13 Identities=23% Similarity=0.278 Sum_probs=5.2
Q ss_pred HhcCChHHHHHHH
Q 012442 158 CGAGKYDEAVMSF 170 (463)
Q Consensus 158 ~~~g~~~~A~~~~ 170 (463)
.+.|++++|..+.
T Consensus 50 mNrG~Yq~Al~l~ 62 (115)
T TIGR02508 50 MNRGDYQSALQLG 62 (115)
T ss_pred HccchHHHHHHhc
Confidence 3334444444333
No 337
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.53 E-value=8.7 Score=32.07 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=24.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHH
Q 012442 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208 (463)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 208 (463)
.+..+.+.+.+++++...++-++.. +-|..+-..++..+|-. |++++|..-++.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcva-Gdw~kAl~Ql~l 60 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVA-GDWEKALAQLNL 60 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhc-chHHHHHHHHHH
Confidence 3444444555555555544444332 22333344444555555 555555444443
No 338
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.00 E-value=19 Score=34.57 Aligned_cols=93 Identities=9% Similarity=0.002 Sum_probs=56.1
Q ss_pred HHhhCCCCCCHHHHHHHHHhccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHH
Q 012442 71 ALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTF 150 (463)
Q Consensus 71 ~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 150 (463)
.+...|+..+...+..+...+.|+...|+.+++.+.... ....++..+ .+++ |..+...+
T Consensus 192 i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~-~~~it~~~V-------------~~~l------g~~~~~~~ 251 (484)
T PRK14956 192 LCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFT-DSKLTGVKI-------------RKMI------GYHGIEFL 251 (484)
T ss_pred HHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhC-CCCcCHHHH-------------HHHh------CCCCHHHH
Confidence 334456777777777777777777777777777543110 001112111 1111 44566666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHH
Q 012442 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV 183 (463)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 183 (463)
..++......+....|+.++++|.+.|..|...
T Consensus 252 ~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 252 TSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 777776666666678888888888888766544
No 339
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.85 E-value=38 Score=33.15 Aligned_cols=100 Identities=9% Similarity=0.009 Sum_probs=51.1
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 012442 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307 (463)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 307 (463)
.+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+.
T Consensus 648 l~lgrl~iA~~la~e~~--------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN--------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhcCcHHHHHHHHHhhc--------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence 45566666666555442 334566666666666666666666655433 2344445555555554
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351 (463)
Q Consensus 308 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 351 (463)
...+-.. .+..|. .|... -+|...|+++++.+++.+-
T Consensus 711 l~~la~~-~~~~g~-~N~AF-----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 711 LAVLASL-AKKQGK-NNLAF-----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHH-HHhhcc-cchHH-----HHHHHcCCHHHHHHHHHhc
Confidence 4444333 233332 12221 2234456666666655443
No 340
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.80 E-value=6.7 Score=35.06 Aligned_cols=88 Identities=10% Similarity=0.059 Sum_probs=46.3
Q ss_pred HHHHHcCCHhHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCC
Q 012442 297 DILVKLNDSTHAVQLWDIMMVFHGAFP-DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375 (463)
Q Consensus 297 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 375 (463)
+-|.+.|.+++|+..|...+. ..| |.+++..-..+|.+..++..|..-....+..+ ..-...|..-+.+-...|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 346777777777777766433 233 56666666666777777666666555555433 1112223333333333344
Q ss_pred HHHHHHHHHHHHH
Q 012442 376 PEIAIEIWNYILE 388 (463)
Q Consensus 376 ~~~a~~~~~~~~~ 388 (463)
..+|.+-++...+
T Consensus 181 ~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 181 NMEAKKDCETVLA 193 (536)
T ss_pred HHHHHHhHHHHHh
Confidence 4444444444444
No 341
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.42 E-value=22 Score=29.38 Aligned_cols=57 Identities=18% Similarity=0.100 Sum_probs=30.6
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 012442 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN 389 (463)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 389 (463)
..++.+.+.++.|.+-..+.++.+ +........-..+|.+...+++|++-|+++.+.
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 344555566666666666555554 323333333344555666666666666666653
No 342
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.16 E-value=7.6 Score=34.71 Aligned_cols=94 Identities=11% Similarity=0.013 Sum_probs=62.1
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 012442 261 LITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR 340 (463)
Q Consensus 261 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 340 (463)
.+.|.+.|.+++|++.|..-.... +-+.+++..-..+|.+...+..|+.=.+..+.... .-+..|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--LYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--HHHHHHHHHHHHHHHHhh
Confidence 467999999999999999877653 33889999999999999998877766555322110 011223333333333456
Q ss_pred HhHHHHHHHHHHHCCCCCC
Q 012442 341 VHEVEKFFHEMIKNEWQPT 359 (463)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~ 359 (463)
..+|.+-++..++. .|+
T Consensus 181 ~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHHhHHHHHhh--Ccc
Confidence 66676666666655 455
No 343
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.90 E-value=35 Score=29.92 Aligned_cols=137 Identities=9% Similarity=-0.005 Sum_probs=61.6
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCHH-------HHHHHHHHHHHcCCHhHHHHHHHH---HHHhcCCCCCHHHHHHH
Q 012442 262 ITLIRGKQVDEALKFLRVMKGENCFPTLK-------FFSNALDILVKLNDSTHAVQLWDI---MMVFHGAFPDSLTYNMI 331 (463)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~ll~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~~~~~~l 331 (463)
+-..+.+++++|+..+.++...|+..|.. +...+...|...|+...--+.... .|....-+..+....+|
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 33444555555555555555555444332 333445555555554443333222 12211112223334444
Q ss_pred HHHHHHc-CCHhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhCCCCHHHHHHHHHH----HHHcCCCCChhhH
Q 012442 332 FECLIKN-KRVHEVEKFFHEMIKNEWQPTP-----LNCATAITMLLDADEPEIAIEIWNY----ILENGILPLEASA 398 (463)
Q Consensus 332 i~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~----~~~~~~~p~~~~~ 398 (463)
+..+-.. ..++....+....++...+-+. ..=.-++..+.+.|.+.+|+.+... +.+.+-+|+..+.
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 4444332 2344444444444332111111 1123567777788888887765543 3344445554433
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.77 E-value=4.7 Score=21.85 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012442 219 SFAILLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777776654
No 345
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.73 E-value=34 Score=29.68 Aligned_cols=137 Identities=12% Similarity=0.089 Sum_probs=77.5
Q ss_pred CCCCCHHHHHHHHHHH-HhCCChHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CC-
Q 012442 108 GQRLSPYAWNLMVDVL-GKNGRFEQMWNAVRVMKEDGV----LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH---GV- 178 (463)
Q Consensus 108 ~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~- 178 (463)
+..||+..=|..-..- .+...+++|+.-|.+..+... -.-.+...+|..+.+.|++++....+.+|+.. .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4556665544433321 244578889998888776543 23445667788888889998888888887631 11
Q ss_pred -CcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc--CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012442 179 -EQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDG----DSFAILLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 179 -~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
.-+..+.|+++...... .+.+....+|+.-.. ....|. .|-..|...|...|++.+..++++++.+
T Consensus 101 rNySEKsIN~IlDyiStS-~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTS-KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred ccccHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 12344456666655555 555555555554222 111122 2223455555555666666666655544
No 346
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.37 E-value=29 Score=28.59 Aligned_cols=89 Identities=12% Similarity=0.161 Sum_probs=48.0
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012442 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN-----MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML 370 (463)
Q Consensus 296 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 370 (463)
...+...|++++|...++..+.. +....+. .|.......|.+++|+.+++...+.+. .......-.+.+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 34566677777777777664321 1112222 223345556667777776666655432 222233344556
Q ss_pred hCCCCHHHHHHHHHHHHHcC
Q 012442 371 LDADEPEIAIEIWNYILENG 390 (463)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~ 390 (463)
...|+-++|..-|++..+.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 66666666666666666543
No 347
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.06 E-value=4.3 Score=24.08 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=15.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 012442 153 IFDSYCGAGKYDEAVMSFDVMSMH 176 (463)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~ 176 (463)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 456666666666666666666643
No 348
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=80.98 E-value=12 Score=27.47 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=23.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012442 397 SANELLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 397 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 688888889999999999999888876
No 349
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=80.41 E-value=7.2 Score=23.65 Aligned_cols=34 Identities=12% Similarity=0.257 Sum_probs=25.4
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 012442 405 LRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKK 438 (463)
Q Consensus 405 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 438 (463)
..+.|-.+++..++++|.+.|+..+...|..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3466777778888888888888888777777665
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.84 E-value=20 Score=25.78 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 012442 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349 (463)
Q Consensus 270 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 349 (463)
.++|..+-+.+...+-. ...+--+-+..+.+.|++++|..+.+.. ..||...|.+|-. .+.|..+....-+.
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 45555555555554311 2222222334456677777777766552 4677777766644 45566666666666
Q ss_pred HHHHCCCCCCHHHH
Q 012442 350 EMIKNEWQPTPLNC 363 (463)
Q Consensus 350 ~~~~~~~~~~~~~~ 363 (463)
+|...| .|....|
T Consensus 93 rla~sg-~p~lq~F 105 (115)
T TIGR02508 93 RLAASG-DPRLQTF 105 (115)
T ss_pred HHHhCC-CHHHHHH
Confidence 666666 4444444
No 351
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.31 E-value=13 Score=30.11 Aligned_cols=85 Identities=8% Similarity=-0.010 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHhC---CC-------hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-----------hHHH
Q 012442 108 GQRLSPYAWNLMVDVLGKN---GR-------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK-----------YDEA 166 (463)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~---g~-------~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-----------~~~A 166 (463)
..+.|...++.-..++... .+ +++|..-|++....++....++..+..+|...+. +++|
T Consensus 20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 3455655555444444333 33 3444555555555566566677777766655432 4455
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 012442 167 VMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (463)
Q Consensus 167 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 194 (463)
.+.|++.... +|+...|+.-+....+
T Consensus 100 ~~~FqkAv~~--~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 100 TEYFQKAVDE--DPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHH---TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHHh
Confidence 5555555543 6888888777766543
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.24 E-value=6.5 Score=37.84 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=19.2
Q ss_pred CcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012442 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 243 (463)
|....|..++.+...-....+.++..+.++|....+++.|++.|++.
T Consensus 656 ~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a 702 (886)
T KOG4507|consen 656 GLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQA 702 (886)
T ss_pred hhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHH
Confidence 33444444443333322233333444444444444444444444444
No 353
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.16 E-value=6.3 Score=21.32 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 012442 150 FASIFDSYCGAGKYDEAVMSFDVMS 174 (463)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~ 174 (463)
|..+...|...|++++|.+.|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 354
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.67 E-value=3.4 Score=21.05 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=11.1
Q ss_pred HHHHHHHcCCCHHHHHHHHH
Q 012442 400 ELLVGLRNLGRLSDVRRFAE 419 (463)
Q Consensus 400 ~li~~~~~~g~~~~a~~~~~ 419 (463)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455556666666655543
No 355
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.63 E-value=3.7 Score=21.99 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=12.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 012442 153 IFDSYCGAGKYDEAVMSFDVMSM 175 (463)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~ 175 (463)
+..++.+.|++++|.+.|+++.+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444555555555555555543
No 356
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.36 E-value=30 Score=27.00 Aligned_cols=53 Identities=13% Similarity=-0.053 Sum_probs=34.3
Q ss_pred ChhhHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 394 LEASANELLVGLRNLGR-LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 394 ~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
+...|.+++.+..+..- ---+..+|+-|++.+.+++..-|..+++++.+....
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Confidence 34467777777655554 334556677777667777777777777777665444
No 357
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=77.79 E-value=24 Score=25.68 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=15.5
Q ss_pred ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHH
Q 012442 128 RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166 (463)
Q Consensus 128 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 166 (463)
..++|..+.+++...+.....+--+-+..+.+.|++++|
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A 59 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA 59 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 344444444444444332222222333344455555555
No 358
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=77.55 E-value=58 Score=29.87 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc--hHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 012442 213 VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (463)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (463)
......+|..+++.+-+.|.++.|...+..+... +.... .....-.-...+-..|+..+|+..++......
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3345577888999999999999999999988763 21110 12345555677788899999999999887743
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.12 E-value=8.6 Score=26.17 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHcCCCHHHHHHH
Q 012442 372 DADEPEIAIEIWNYILENGILPLE--ASANELLVGLRNLGRLSDVRRF 417 (463)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~ 417 (463)
...+.++|+..|+...+.-..+.. .++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777766654322221 2445566677777777776654
No 360
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=76.97 E-value=26 Score=28.43 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHcCCCC---HH-----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 129 FEQMWNAVRVMKEDGVLS---LP-----TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 129 ~~~a~~~~~~m~~~~~~~---~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
++.|+.+|+.+.+...++ .. .-...+..|.+.|.+++|.+++++... .|+......-+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHc
Confidence 467888888877765432 11 122345678899999999999998876 45555555555555554
No 361
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.78 E-value=1e+02 Score=32.28 Aligned_cols=118 Identities=12% Similarity=0.169 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCchHhhHHHHHHHHHccCCH--HHHHHHHHHHhhCCCCCCHHHHHH-
Q 012442 219 SFAILLEGWEKEGNVEEANKTFGEMVERFE-WNPEHVLAYETFLITLIRGKQV--DEALKFLRVMKGENCFPTLKFFSN- 294 (463)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~- 294 (463)
-|..|+..|...|+.++|+++|.+..+... ..+.-...+..++..+.+.+.. +-++++-+.............+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 477888999999999999999998876310 1111122334455555555444 555555555544331111111111
Q ss_pred -----------HHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 012442 295 -----------ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337 (463)
Q Consensus 295 -----------ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (463)
-+-.|......+-+..+++.++... -..+....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~-~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDN-RLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhc-cccchHHHHHHHHHHHH
Confidence 2334566777777888888854433 33456666777766664
No 362
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=76.42 E-value=87 Score=31.30 Aligned_cols=110 Identities=11% Similarity=0.040 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCCChhhHH-
Q 012442 325 SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN----GILPLEASAN- 399 (463)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~- 399 (463)
...-.-++..|.+.|-.+.|.++.+.+-.+-+ ...-|..-+..+.++|+......+.+.+.+. |...+....+
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~ 482 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDN 482 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------------------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 34455666667777777777777666544321 2334556666666777666655555444432 2111111111
Q ss_pred ---------------HHHH--HHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHH
Q 012442 400 ---------------ELLV--GLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKL 436 (463)
Q Consensus 400 ---------------~li~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 436 (463)
.+-+ -..+.|++.+|.+.+-.+...++.|...-...|
T Consensus 483 i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL 536 (566)
T PF07575_consen 483 IGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLL 536 (566)
T ss_dssp ------------------------------------------------------
T ss_pred hcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHH
Confidence 1111 012347777777777777766666665444433
No 363
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=76.06 E-value=28 Score=25.42 Aligned_cols=80 Identities=10% Similarity=0.139 Sum_probs=31.1
Q ss_pred CCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012442 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172 (463)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 172 (463)
.+.++|..+.+|......-....--.-+..+.+.|++++| +..-.....||...|..|.. .+.|-.+++...+.+
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 3445555555555542221222222223334555555555 22222222344444433322 345555555555555
Q ss_pred HHhCC
Q 012442 173 MSMHG 177 (463)
Q Consensus 173 m~~~g 177 (463)
+...|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 54443
No 364
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.85 E-value=1.1e+02 Score=32.10 Aligned_cols=130 Identities=12% Similarity=0.239 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 012442 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229 (463)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (463)
|..|+..|...|..++|+++|.+.....-.-|. +.. ...+..++++..... ++....-.... +.-
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~-~~~----------~~~e~ii~YL~~l~~---~~~~Li~~y~~-wvl 571 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDS-FQL----------DGLEKIIEYLKKLGA---ENLDLILEYAD-WVL 571 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcccccccc-chh----------hhHHHHHHHHHHhcc---cchhHHHHHhh-hhh
Confidence 778888888888888888888888752100000 000 111122222222211 21111111111 112
Q ss_pred cCCHHHHHHHHHHHH--HhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 012442 230 EGNVEEANKTFGEMV--ERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301 (463)
Q Consensus 230 ~g~~~~a~~~~~~~~--~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 301 (463)
..+.+.+.++|..-. +...+.+++ +-.|......+-+..+++.+....-.++....+.++..|++
T Consensus 572 ~~~p~~gi~Ift~~~~~~~~sis~~~-------Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 572 NKNPEAGIQIFTSEDKQEAESISRDD-------VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ccCchhheeeeeccChhhhccCCHHH-------HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 344555556655410 111333321 23455666677777777777666555566666666666653
No 365
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=75.79 E-value=62 Score=30.40 Aligned_cols=62 Identities=13% Similarity=0.062 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh-----cCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 012442 220 FAILLEGWEKEGNVEEANKTFGEMVER-----FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281 (463)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 281 (463)
...|++.++-.||+..|+++++.+.-. ..+.+-.+.++.-+.-+|...+++.+|.++|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888887765321 11233345567777888888888888888887763
No 366
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.07 E-value=43 Score=29.34 Aligned_cols=88 Identities=9% Similarity=-0.004 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-
Q 012442 294 NALDILVKLNDSTHAVQLWDIMMV-FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLL- 371 (463)
Q Consensus 294 ~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~- 371 (463)
.=|.+++..|++.++....-+... -..++|. .....|-.|.+.+.+..+.++-..-.+..-.-+...|..++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 347888999999888776543211 1223333 344445568899999888888887776422333444776665554
Q ss_pred ----CCCCHHHHHHHH
Q 012442 372 ----DADEPEIAIEIW 383 (463)
Q Consensus 372 ----~~g~~~~a~~~~ 383 (463)
=.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 568999998876
No 367
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.04 E-value=1.1e+02 Score=31.73 Aligned_cols=220 Identities=11% Similarity=0.050 Sum_probs=101.8
Q ss_pred CcHHHHHHHHHHhhcCCCC-----CHH---HHHHHH-HHHHhcCCHHHHHHHHHHHHHhcC---CCCchHhhHHHHHHHH
Q 012442 197 NQTSRALEFLNRVKKIVDP-----DGD---SFAILL-EGWEKEGNVEEANKTFGEMVERFE---WNPEHVLAYETFLITL 264 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~-----~~~---~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~---~~p~~~~~~~~li~~~ 264 (463)
.++++|..+..++..-.++ ... .|+.+- ......|+.+.|.++.+....... ..+ .+..+..+..+.
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~-r~~~~sv~~~a~ 507 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS-RIVALSVLGEAA 507 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh-hhhhhhhhhHHH
Confidence 6677777777766541111 111 233221 122345777777777766654311 111 334555666666
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCHHHHHH---H--HHHHHHcCCH--hHHHHHHHHHHHhcCC-CC----CHHHHHHHH
Q 012442 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSN---A--LDILVKLNDS--THAVQLWDIMMVFHGA-FP----DSLTYNMIF 332 (463)
Q Consensus 265 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---l--l~~~~~~g~~--~~a~~~~~~~~~~~~~-~~----~~~~~~~li 332 (463)
.-.|++++|..+..+..+..-.-+...+.. + ...+...|+. ......|...-..... +| -.-++..+.
T Consensus 508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll 587 (894)
T COG2909 508 HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLL 587 (894)
T ss_pred HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Confidence 677888888777766654422223322222 2 2234455632 2222223321111110 11 122333444
Q ss_pred HHHHHcCCHhHHHHHHHHHHH----CCCCCCHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCCC----ChhhHHHHH
Q 012442 333 ECLIKNKRVHEVEKFFHEMIK----NEWQPTPLNC--ATAITMLLDADEPEIAIEIWNYILENGILP----LEASANELL 402 (463)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~li 402 (463)
.++.+ .+.+..-...-.+ ....|-...+ ..|+......|++++|...++++......+ +...-...+
T Consensus 588 ~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 588 RAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 44443 3333322222222 1111111222 256677778888888888888877543332 111112222
Q ss_pred H--HHHcCCCHHHHHHHHHH
Q 012442 403 V--GLRNLGRLSDVRRFAEE 420 (463)
Q Consensus 403 ~--~~~~~g~~~~a~~~~~~ 420 (463)
. .....|+.+++...+.+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 2 23355777777666655
No 368
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=73.12 E-value=90 Score=29.96 Aligned_cols=97 Identities=8% Similarity=0.074 Sum_probs=52.7
Q ss_pred CCHHHH-HHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--cCCHhHHHHHHHHHHHC-CCCCCHHH
Q 012442 287 PTLKFF-SNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK--NKRVHEVEKFFHEMIKN-EWQPTPLN 362 (463)
Q Consensus 287 ~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~ 362 (463)
|+..|+ +.+++.+.+.|-.++|..++..+... .+++...|..+|+.=.. .-+...+.++|+.|... | .|+..
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 444443 34566666666667777776663222 23455556555543211 11255666666666543 4 45566
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH
Q 012442 363 CATAITMLLDADEPEIAIEIWNYIL 387 (463)
Q Consensus 363 ~~~li~~~~~~g~~~~a~~~~~~~~ 387 (463)
|.-.+.-=...|..+.+-.++.++.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHH
Confidence 6655555556666666666655544
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.92 E-value=11 Score=25.70 Aligned_cols=17 Identities=0% Similarity=0.026 Sum_probs=6.8
Q ss_pred HHHHHHHHHcCCHhHHH
Q 012442 293 SNALDILVKLNDSTHAV 309 (463)
Q Consensus 293 ~~ll~~~~~~g~~~~a~ 309 (463)
..++.+|+..|++.++.
T Consensus 47 G~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444443333
No 370
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=72.81 E-value=50 Score=26.91 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=10.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHH
Q 012442 368 TMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 368 ~~~~~~g~~~~a~~~~~~~~~ 388 (463)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 344555555555555555443
No 371
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=72.73 E-value=1.1e+02 Score=30.87 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=23.0
Q ss_pred HHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 012442 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE 230 (463)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (463)
+|-.|.++ |++++|.++.....+........+...+..|...
T Consensus 117 ~Iyy~LR~-G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRC-GDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTT-T-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhc-CCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 45555566 6666666666555555555555555556655543
No 372
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.46 E-value=92 Score=31.56 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHcC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHH----------HHHHHHHHHccC
Q 012442 131 QMWNAVRVMKEDG----VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA----------VNSLLSAICRQE 196 (463)
Q Consensus 131 ~a~~~~~~m~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~----------~~~ll~~~~~~~ 196 (463)
+-..++.+|+.+- +....+...++-.|....+++..+++.+.+.. -||..- |...++---+.
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~- 256 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRP- 256 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCC-
Confidence 3445566666542 34566777777778888888888888888876 343221 22233333344
Q ss_pred CcHHHHHHHHHHhhc---CCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 012442 197 NQTSRALEFLNRVKK---IVDPDGDSFAI-------LLEGWEKEGNVEEANKTFGEMVERFEWNP 251 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~---~~~~~~~~~~~-------l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 251 (463)
|+-++|+...-.+.+ .+.||.....- +-+.|...+..+.|.+.|++. +.+.|
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~Wyrka---FeveP 318 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKA---FEVEP 318 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHH---hccCc
Confidence 777777777666544 34555432211 122334455566777777766 34466
No 373
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=72.23 E-value=11 Score=24.44 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012442 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 376 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
++...++++.+... .-|..-.-.+|.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555544431 12223344566777777777777777776653
No 374
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=71.71 E-value=30 Score=32.20 Aligned_cols=125 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCChHH---HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012442 115 AWNLMVDVLGKNGRFEQ---MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 191 (463)
+-..+++.+...++... |.-+++......+.+...--.+++.|...|-...|.+.|..+.-+.+.-|...|. ++.-
T Consensus 182 a~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~-~~~r 260 (365)
T PF09797_consen 182 AAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHL-ILDR 260 (365)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHH-HHHH
Q ss_pred HHccCCcHHHHH-HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012442 192 ICRQENQTSRAL-EFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241 (463)
Q Consensus 192 ~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (463)
+... |....+. ..++....-...+..-....+....+.|.+.+..++.+
T Consensus 261 ~~~~-~~~~~~~~~~~~~~~~fy~~~~~~~~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 261 LSTL-GPFKSAPENLLENALKFYDNSEKETPEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred Hhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHH
No 375
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.66 E-value=39 Score=25.54 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
+..+-++.+...++.|+......-+.+|-+.+++..|.++|+-++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444455555555556666666666666666666666666655553
No 376
>PRK12798 chemotaxis protein; Reviewed
Probab=68.59 E-value=1e+02 Score=28.85 Aligned_cols=197 Identities=10% Similarity=0.075 Sum_probs=116.2
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 012442 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD---GDSFAILLEGWEKEGNVEEA 236 (463)
Q Consensus 160 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a 236 (463)
.|+..+|.+.|..+...-.++....|-.|+.+-.-...+...|+++|+..+--.+-+ .....--+-...+.|+.++.
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 588888888888887666677777888888776666588888999888865422222 22334445567788999988
Q ss_pred HHHHHHHHHhcCCCCchHhhHHHHHHHHHccCC---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 012442 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ---VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313 (463)
Q Consensus 237 ~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 313 (463)
..+-.+...++.-.|--...+..+...+.+.++ .+....++..|.... -...|..+...-...|+.+-|...-+
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~---q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPER---QRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchh---HHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888877777655555222233334444444432 333333333332111 24578888888888898888877777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHH--HcCCHhHHHHHHHHHHHCCCCCC
Q 012442 314 IMMVFHGAFPDSLTYNMIFECLI--KNKRVHEVEKFFHEMIKNEWQPT 359 (463)
Q Consensus 314 ~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~ 359 (463)
+......-..-...-..|-.+.. -..+++++.+.+..+-...+.+.
T Consensus 282 ~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 282 RALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred HHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChh
Confidence 75443321111111111111111 23567777777776655544443
No 377
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.95 E-value=33 Score=28.40 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 012442 322 FPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352 (463)
Q Consensus 322 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (463)
.|+..+|..++..+...|+.++|.+...++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 378
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.86 E-value=39 Score=23.62 Aligned_cols=65 Identities=14% Similarity=0.067 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHH
Q 012442 132 MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202 (463)
Q Consensus 132 a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a 202 (463)
+.++++.+.+.|+.+......+-.+-...|+.+.|.+++..+. .| | ..|...+.++-.. |.-.-|
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT-~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRET-EHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHc-Cchhhh
Confidence 3456666666666555544444443345566777777777766 43 2 2455566666555 544433
No 379
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.73 E-value=39 Score=23.61 Aligned_cols=35 Identities=17% Similarity=0.081 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCH
Q 012442 372 DADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411 (463)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 411 (463)
..|+.+.|.+++..+. .|.. .|..++.++...|.-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~ 82 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHH 82 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCch
Confidence 3344555555554444 3321 444444444444443
No 380
>PRK09687 putative lyase; Provisional
Probab=67.48 E-value=91 Score=27.73 Aligned_cols=235 Identities=10% Similarity=0.028 Sum_probs=124.4
Q ss_pred CcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHhcCCCCchH
Q 012442 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV----EEANKTFGEMVERFEWNPEHV 254 (463)
Q Consensus 179 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~~~~~p~~~ 254 (463)
.+|.......+.++... |..+....+.. +.. .+|...-...+.++++.|+. +++...+..+... .+ +.
T Consensus 34 d~d~~vR~~A~~aL~~~-~~~~~~~~l~~-ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~-d~ 105 (280)
T PRK09687 34 DHNSLKRISSIRVLQLR-GGQDVFRLAIE-LCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DK-SA 105 (280)
T ss_pred CCCHHHHHHHHHHHHhc-CcchHHHHHHH-HHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CC-CH
Confidence 45555555555555555 43222222222 211 24555555666666666652 4566666655332 23 33
Q ss_pred hhHHHHHHHHHccCC-----HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHH
Q 012442 255 LAYETFLITLIRGKQ-----VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329 (463)
Q Consensus 255 ~~~~~li~~~~~~~~-----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 329 (463)
..-...+.++...+. ...+...+...... ++..+-...+.++.+.++. .+...+-.++. .++...-.
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~----d~~~~VR~ 177 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVINDE-AAIPLLINLLK----DPNGDVRN 177 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCCH-HHHHHHHHHhc----CCCHHHHH
Confidence 344444555544432 12233333333332 3455555666777777764 45555544333 23444444
Q ss_pred HHHHHHHHcC-CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcC
Q 012442 330 MIFECLIKNK-RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408 (463)
Q Consensus 330 ~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 408 (463)
.-+.++.+.+ +...+...+..+.. .+|..+-...+.++.+.|+. .|...+-+..+.+. .....+.++.+.
T Consensus 178 ~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~i 248 (280)
T PRK09687 178 WAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGEL 248 (280)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhc
Confidence 4444454432 23456666666664 34666677777888888774 55555555554332 334567788888
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 012442 409 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFY 441 (463)
Q Consensus 409 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 441 (463)
|+. +|...+.++.+.. +|...-...+.+|.
T Consensus 249 g~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 249 GDK-TLLPVLDTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred CCH-hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence 875 5778787777643 46666666666554
No 381
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=67.42 E-value=12 Score=33.12 Aligned_cols=39 Identities=10% Similarity=0.006 Sum_probs=24.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHH
Q 012442 397 SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 435 (463)
Q Consensus 397 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 435 (463)
-|+.-|....+.||+++|+.+++|....|+.--..+|-.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 344666666677777777777777777666544444443
No 382
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.98 E-value=90 Score=27.49 Aligned_cols=88 Identities=10% Similarity=0.037 Sum_probs=54.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-
Q 012442 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK- 301 (463)
Q Consensus 223 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~- 301 (463)
=|.+++..++|.++....-+.-+...--|. .....-|-.|.+.+.+..+.++-..-...--.-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 377888888888888766665443222332 24555567778888888877777665543222233346666655543
Q ss_pred ----cCCHhHHHHHH
Q 012442 302 ----LNDSTHAVQLW 312 (463)
Q Consensus 302 ----~g~~~~a~~~~ 312 (463)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 57777777766
No 383
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.39 E-value=90 Score=29.56 Aligned_cols=206 Identities=13% Similarity=0.017 Sum_probs=99.6
Q ss_pred HccCCcHHHHHHHHHHhhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch--HhhHHHHHHHHHccC
Q 012442 193 CRQENQTSRALEFLNRVKKIVDPDGDS--FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH--VLAYETFLITLIRGK 268 (463)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~~li~~~~~~~ 268 (463)
++. |+.+.+..+++ .|..++... ..+.+...+..|+.+-+. .+.+ .|..|+. .... .-+...+..|
T Consensus 10 ~~~-g~~~iv~~Ll~---~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~-~ga~~~~~~~~~~-t~L~~A~~~g 79 (413)
T PHA02875 10 ILF-GELDIARRLLD---IGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMK-HGAIPDVKYPDIE-SELHDAVEEG 79 (413)
T ss_pred HHh-CCHHHHHHHHH---CCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHh-CCCCccccCCCcc-cHHHHHHHCC
Confidence 445 77766666654 255555432 345666667778775443 3333 2554421 1122 3344555677
Q ss_pred CHHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHHcCCHhH
Q 012442 269 QVDEALKFLRVMKGENCFPTLK---FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT--YNMIFECLIKNKRVHE 343 (463)
Q Consensus 269 ~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~ 343 (463)
+.+.+..+++ .|...+.. .-.+.+...+..|+.+-+..+++ .|..++... -.+.+...+..|+.+-
T Consensus 80 ~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~-----~gad~~~~~~~g~tpLh~A~~~~~~~~ 150 (413)
T PHA02875 80 DVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA-----RGADPDIPNTDKFSPLHLAVMMGDIKG 150 (413)
T ss_pred CHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHHHh-----CCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 7766555543 33221111 11234445556677654444443 344443221 1223344456677654
Q ss_pred HHHHHHHHHHCCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHcCCCHHHHHHH
Q 012442 344 VEKFFHEMIKNEWQPTP---LNCATAITMLLDADEPEIAIEIWNYILENGILPLEAS---ANELLVGLRNLGRLSDVRRF 417 (463)
Q Consensus 344 a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~ 417 (463)
+..+ .+.|..++. .-.+.|..+ +..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+ +
T Consensus 151 v~~L----l~~g~~~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----i 217 (413)
T PHA02875 151 IELL----IDHKACLDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----I 217 (413)
T ss_pred HHHH----HhcCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----H
Confidence 4443 444543332 223333333 3345543 4555667777665432 124444445566654 4
Q ss_pred HHHHHHCCCccCH
Q 012442 418 AEEMLNRRILIYE 430 (463)
Q Consensus 418 ~~~m~~~~~~~~~ 430 (463)
.+-+.+.|..++.
T Consensus 218 v~~Ll~~gad~n~ 230 (413)
T PHA02875 218 VRLFIKRGADCNI 230 (413)
T ss_pred HHHHHHCCcCcch
Confidence 4455667776664
No 384
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=65.89 E-value=1.3e+02 Score=28.96 Aligned_cols=79 Identities=10% Similarity=-0.036 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 012442 98 AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG-KYDEAVMSFDVMSMH 176 (463)
Q Consensus 98 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~ 176 (463)
-..+|+.+...+..|+..|...+..+-+.+.+.+.-.+|..|...++.++..|-....-....+ +++.|..+|..-++.
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 3445566655777899999999998888888999999999999988877776665554444333 478888887776654
No 385
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.74 E-value=36 Score=28.15 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012442 197 NQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
++.+......+...+ ...|+..+|..++..+...|+.++|.++..++..
T Consensus 122 ~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 122 PDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444 4556666666666666667777777666666654
No 386
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.66 E-value=28 Score=21.10 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=20.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012442 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190 (463)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 190 (463)
..+.|-..++..++++|.+.|+.-+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455566666666666666666666666655543
No 387
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=65.64 E-value=87 Score=26.83 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012442 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (463)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 192 (463)
|.+.....+++.|. .+++++|.+++.++-+.|+.|... .+.+.+++
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 44445555555543 456777777777777777666443 33344443
No 388
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=65.14 E-value=1e+02 Score=27.50 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHcCCHhHHH
Q 012442 291 FFSNALDILVKLNDSTHAV 309 (463)
Q Consensus 291 ~~~~ll~~~~~~g~~~~a~ 309 (463)
+|.-|+.+++..|+.+-..
T Consensus 323 ~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhhHHHHHHhcCChHHHHH
Confidence 4666677777777665543
No 389
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.07 E-value=7.2 Score=29.65 Aligned_cols=29 Identities=24% Similarity=0.164 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 012442 409 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439 (463)
Q Consensus 409 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 439 (463)
|.-.+|..+|++|.+.|-+|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 344455555555655555555 44444443
No 390
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=64.75 E-value=8.1 Score=29.39 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 012442 374 DEPEIAIEIWNYILENGILPLEASANELLV 403 (463)
Q Consensus 374 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 403 (463)
|.-.+|..+|++|++.|-+|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 344455566666666665554 4555554
No 391
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=64.48 E-value=1e+02 Score=27.30 Aligned_cols=87 Identities=10% Similarity=0.085 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH-----HHCCCccC
Q 012442 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILEN-GILPLEASANELLVGLRNLGRLSDVRRFAEEM-----LNRRILIY 429 (463)
Q Consensus 356 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m-----~~~~~~~~ 429 (463)
-.++..+...++..++..+++.+-.++++..... +..-|...|..+|+.....|+..-..++.++= ++.|+..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~ 277 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVT 277 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCC
Confidence 3667777777888888888888888887776654 55567778888888888888877776666542 34566666
Q ss_pred HHHHHHHHHHHHH
Q 012442 430 EVTMHKLKKAFYN 442 (463)
Q Consensus 430 ~~~~~~ll~~~~~ 442 (463)
...-..+-+.+.+
T Consensus 278 ~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 278 DELRSQLSELFKK 290 (292)
T ss_pred HHHHHHHHHHHHh
Confidence 6665555554443
No 392
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=63.59 E-value=1.1e+02 Score=27.25 Aligned_cols=86 Identities=10% Similarity=-0.030 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCC--------
Q 012442 342 HEVEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG-------- 409 (463)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-------- 409 (463)
..|...|.++...+ +......+...|.. ..+.++|...|....+.|. ....|+ +- .+...|
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~-~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYN-LG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHH-HH-HHHhcCCCchhhhh
Confidence 35666666666655 33333334433322 3366777777777777664 111121 11 333333
Q ss_pred -------CHHHHHHHHHHHHHCCCccCHHHHH
Q 012442 410 -------RLSDVRRFAEEMLNRRILIYEVTMH 434 (463)
Q Consensus 410 -------~~~~a~~~~~~m~~~~~~~~~~~~~ 434 (463)
+...|...+......+.........
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 6666677777666666554444444
No 393
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.42 E-value=12 Score=33.62 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=59.1
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHcCCCHHHHH
Q 012442 337 KNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEA-SANELLVGLRNLGRLSDVR 415 (463)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~ 415 (463)
..|.+++|++.|...++.. ++....|..-.+++.+.+....|++=+....+ +.||.. -|-.--.+....|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHH
Confidence 3466778888887777776 66666777777777777777777777766665 334332 2222223444567788888
Q ss_pred HHHHHHHHCCCccCH
Q 012442 416 RFAEEMLNRRILIYE 430 (463)
Q Consensus 416 ~~~~~m~~~~~~~~~ 430 (463)
..|....+.++.+..
T Consensus 203 ~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 203 HDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHhccccHHH
Confidence 888877777765443
No 394
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=63.24 E-value=1.5e+02 Score=28.72 Aligned_cols=166 Identities=11% Similarity=0.134 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHH
Q 012442 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260 (463)
Q Consensus 181 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~l 260 (463)
|.....+++..+..+ ..+.-++.+..+|.. ...+...|..++.+|... .-++-..+|+++.+- .+ +|+..-..|
T Consensus 65 ~d~~l~~~~~~f~~n-~k~~~veh~c~~~l~-~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~-df--nDvv~~ReL 138 (711)
T COG1747 65 DDSCLVTLLTIFGDN-HKNQIVEHLCTRVLE-YGESKMALLELLQCYKEN-GNEQLYSLWERLVEY-DF--NDVVIGREL 138 (711)
T ss_pred cchHHHHHHHHhccc-hHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh-cc--hhHHHHHHH
Confidence 344444555555554 444444555444443 123444555555555555 334445555555442 22 123222223
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 012442 261 LITLIRGKQVDEALKFLRVMKGENCFP-----TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECL 335 (463)
Q Consensus 261 i~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 335 (463)
...|-+ ++.+.+...|.+....-++- -...|..+... -..+.+...++...+....|...-.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 333322 55555555555544332110 01123332221 12334444444444444444433344444444445
Q ss_pred HHcCCHhHHHHHHHHHHHCC
Q 012442 336 IKNKRVHEVEKFFHEMIKNE 355 (463)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~ 355 (463)
....++.+|.+++..+.+.+
T Consensus 216 s~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 216 SENENWTEAIRILKHILEHD 235 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc
Confidence 55555555555555554443
No 395
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=63.17 E-value=19 Score=31.88 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=13.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 012442 257 YETFLITLIRGKQVDEALKFLRVMKGEN 284 (463)
Q Consensus 257 ~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (463)
|+.-|..-.+.||+++|++++++..+.|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG 287 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLG 287 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3444444444444444444444444444
No 396
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=62.90 E-value=34 Score=25.20 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=14.6
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHH
Q 012442 329 NMIFECLIKNKRVHEVEKFFHEM 351 (463)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~~ 351 (463)
..++..|...++.++|...+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34555666677777777777665
No 397
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=62.81 E-value=39 Score=25.64 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHH
Q 012442 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFL 277 (463)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~ 277 (463)
..++|..|..+ |+-..-+..|......+-..|++.+|.++|
T Consensus 82 p~~if~~L~~~-~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 82 PRELFQFLYSK-GIGTKLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444444443 433323333444444444445555554444
No 398
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=62.59 E-value=14 Score=18.62 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 012442 150 FASIFDSYCGAGKYDEAVMSFDVMS 174 (463)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~ 174 (463)
|..+...+...|+++.|...|+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444455555555555555555544
No 399
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=62.37 E-value=67 Score=24.42 Aligned_cols=42 Identities=7% Similarity=0.123 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012442 131 QMWNAVRVMKEDGV--LSLPTFASIFDSYCGAGKYDEAVMSFDV 172 (463)
Q Consensus 131 ~a~~~~~~m~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 172 (463)
.+.++|..|...++ .-...|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666654 2455666666666666666666666654
No 400
>PRK10941 hypothetical protein; Provisional
Probab=62.29 E-value=93 Score=27.45 Aligned_cols=60 Identities=8% Similarity=0.028 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc
Q 012442 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211 (463)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 211 (463)
.+.+-.+|.+.++++.|+++.+.+.... +.|..-+.----.|.+. |.+..|..-++...+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL-~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQL-DCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHH
Confidence 3445555566666666666666665542 22333344344445555 666666555555433
No 401
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=62.06 E-value=34 Score=25.09 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=23.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHH
Q 012442 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFA 151 (463)
Q Consensus 119 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 151 (463)
+++.+.++...++|+++++.|.++|-.+...-+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GEIt~e~A~ 99 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGEITPEEAK 99 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 455677778888888888888888866544333
No 402
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.72 E-value=16 Score=23.68 Aligned_cols=24 Identities=25% Similarity=0.065 Sum_probs=12.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Q 012442 364 ATAITMLLDADEPEIAIEIWNYIL 387 (463)
Q Consensus 364 ~~li~~~~~~g~~~~a~~~~~~~~ 387 (463)
-.+|.+|...|++++|.++.+++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345555555555555555555444
No 403
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=61.31 E-value=2.2e+02 Score=30.01 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=17.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 012442 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVE 179 (463)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 179 (463)
..+++++. .++...++.+++++.+.|..
T Consensus 252 ~~lidAL~-~~D~a~al~~l~~Li~~G~d 279 (824)
T PRK07764 252 DEAVDALA-AGDGAALFGTVDRVIEAGHD 279 (824)
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHcCCC
Confidence 34444444 46677777777777776654
No 404
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=60.95 E-value=1e+02 Score=26.20 Aligned_cols=97 Identities=10% Similarity=0.010 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCC---CHHHH--HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH
Q 012442 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP---DSLTY--NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP 360 (463)
Q Consensus 286 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 360 (463)
.++..-++.|+--|.-...+.+|-..|.. ..|+.+ +..++ ..-|....+.|++++|.+....+...-+..|.
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~---e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK---ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc---ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 34455555655555544445445555533 344444 33333 24455667778888887777776543333343
Q ss_pred HHHHHHHH----HHhCCCCHHHHHHHHHH
Q 012442 361 LNCATAIT----MLLDADEPEIAIEIWNY 385 (463)
Q Consensus 361 ~~~~~li~----~~~~~g~~~~a~~~~~~ 385 (463)
..+-.|.. =..+.|..++|+++.+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22222221 13455666666665543
No 405
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.80 E-value=1.3e+02 Score=26.74 Aligned_cols=69 Identities=13% Similarity=0.016 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHhc---CCCCCHHHHHHH-HHHHHHcCCHhHHHHHHHHHHHCCCC
Q 012442 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFH---GAFPDSLTYNMI-FECLIKNKRVHEVEKFFHEMIKNEWQ 357 (463)
Q Consensus 289 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (463)
...+..+...|++.++.+.+.++..+.+... |.+.|+...-+- .-.|....-+++-++..+.|.++|..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 3456666667777777777666666644322 333333221111 11222233345556666666666643
No 406
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.45 E-value=1.5e+02 Score=27.64 Aligned_cols=63 Identities=8% Similarity=0.103 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CchHhhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 012442 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWN-PEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (463)
.+.-+.+.|..+|+++.|++.|.+..+- .-. ...+..|-.+|..-.-.|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3455667777788888888777775432 111 11234455556666666777666666655544
No 407
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=59.26 E-value=2.4e+02 Score=29.77 Aligned_cols=50 Identities=14% Similarity=-0.003 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 012442 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN 338 (463)
Q Consensus 289 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 338 (463)
..++..-...+...|++..|.+++.++.+..+-.++...|-.++..+...
T Consensus 1231 sK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~L 1280 (1304)
T KOG1114|consen 1231 SKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENL 1280 (1304)
T ss_pred chheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHh
Confidence 33333344444445555555555555444444444444444444433333
No 408
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=58.65 E-value=29 Score=22.70 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=37.6
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHh
Q 012442 392 LPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443 (463)
Q Consensus 392 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 443 (463)
.|....++.++..+++..-.++++..+.+....|. .+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 45667888888888888888999999999988886 4556666666655554
No 409
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=58.16 E-value=1e+02 Score=25.50 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 012442 151 ASIFDSYCGAGKYDEAVMSFDVMS 174 (463)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~ 174 (463)
+..+-.....|++++|.+-++++.
T Consensus 33 s~~aI~~~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 33 SGEAIFLLHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444455566666666655553
No 410
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.01 E-value=1.2e+02 Score=26.05 Aligned_cols=114 Identities=11% Similarity=0.028 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHH
Q 012442 127 GRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL 206 (463)
Q Consensus 127 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 206 (463)
.+++.|..-|.+....++....-|+.-+.++.+..+++.+..--...++. .||.+--...+..+......++.|+..+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 44555555555555554444444555555566666666555544444432 4554444444433332225566666555
Q ss_pred HHhhc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012442 207 NRVKK-----IVDPDGDSFAILLEGWEKEGNVEEANKTFGE 242 (463)
Q Consensus 207 ~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 242 (463)
.+... .+.+-...+..|..+--+.-...+..++.++
T Consensus 102 qra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 102 QRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 55422 2333334444444444333344444444443
No 411
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=57.84 E-value=2.4e+02 Score=29.33 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=23.1
Q ss_pred HhhCCCCCCHHHHHHHHHhccCCchHHHHHHHHh
Q 012442 72 LACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWA 105 (463)
Q Consensus 72 l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~ 105 (463)
+...|+..+...+..+.+.+.|+...|+.+++.+
T Consensus 191 l~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQA 224 (830)
T PRK07003 191 LGEERIAFEPQALRLLARAAQGSMRDALSLTDQA 224 (830)
T ss_pred HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3345666677777777777777777777776643
No 412
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=57.43 E-value=65 Score=25.24 Aligned_cols=59 Identities=15% Similarity=0.022 Sum_probs=27.9
Q ss_pred HHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhc
Q 012442 385 YILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444 (463)
Q Consensus 385 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 444 (463)
.+.+.|++++. --..++..+.+.++.-.|.++++++.+.+...+..|.-.-++.+...|
T Consensus 11 ~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444444332 222344444444444555555555555554444444444445555544
No 413
>PRK13342 recombination factor protein RarA; Reviewed
Probab=57.01 E-value=1.8e+02 Score=27.65 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=20.3
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012442 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191 (463)
Q Consensus 160 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 191 (463)
..+.+.|+..+..|.+.|..|....-..++.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46777788888888877766654444433333
No 414
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=56.54 E-value=1.8e+02 Score=29.80 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=19.3
Q ss_pred HhhCCCCCCHHHHHHHHHhccCCchHHHHHHHH
Q 012442 72 LACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW 104 (463)
Q Consensus 72 l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~ 104 (463)
+...|+..+...+..+...+.|+...|+.+++.
T Consensus 191 l~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDq 223 (709)
T PRK08691 191 LDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQ 223 (709)
T ss_pred HHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344555566666655555556666666666654
No 415
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.48 E-value=1.9e+02 Score=29.22 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC
Q 012442 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181 (463)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 181 (463)
+......++.++.. |+...++++++++...|..+.
T Consensus 250 ~~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 250 DRSHVFRLIDALAQ-GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 44444555555444 677777787877777765543
No 416
>PRK09857 putative transposase; Provisional
Probab=56.30 E-value=98 Score=27.73 Aligned_cols=66 Identities=15% Similarity=0.113 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccC
Q 012442 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429 (463)
Q Consensus 363 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 429 (463)
+..++......++.++-.++++.+.+. .+.......++..-+.+.|..+++.++.++|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555545566666666666666654 233333455566666666766778888888888887554
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.26 E-value=70 Score=22.68 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=13.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 012442 153 IFDSYCGAGKYDEAVMSFDVMS 174 (463)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~ 174 (463)
+.......|+.++|.+.+++.+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3445556677777777666665
No 418
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=55.10 E-value=1.6e+02 Score=26.59 Aligned_cols=95 Identities=9% Similarity=0.040 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHH---hcCCCCCHHHHHHHHHH-HHHcCCHhHHHHHHHHHHHCCCCCCH----HH
Q 012442 291 FFSNALDILVKLNDSTHAVQLWDIMMV---FHGAFPDSLTYNMIFEC-LIKNKRVHEVEKFFHEMIKNEWQPTP----LN 362 (463)
Q Consensus 291 ~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 362 (463)
.+......||+.|+.+.|.+.+...+. .-|.+.|+..+..-+.. |....-+.+-.+..+.+.+.|...+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 444555666666666666666655322 22344454444333322 22222233344444444555533322 22
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH
Q 012442 363 CATAITMLLDADEPEIAIEIWNYIL 387 (463)
Q Consensus 363 ~~~li~~~~~~g~~~~a~~~~~~~~ 387 (463)
|..+-. ....++.+|-.+|-+..
T Consensus 186 Y~Gly~--msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLYC--MSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHH--HHHHhHHHHHHHHHHHc
Confidence 333221 22335555555554443
No 419
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=55.04 E-value=1.6e+02 Score=26.40 Aligned_cols=18 Identities=17% Similarity=0.098 Sum_probs=10.9
Q ss_pred hHHHHHHHHHcCCCHHHH
Q 012442 397 SANELLVGLRNLGRLSDV 414 (463)
Q Consensus 397 ~~~~li~~~~~~g~~~~a 414 (463)
.|.-|+.+++..|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 566666666666665543
No 420
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.54 E-value=1.4e+02 Score=25.64 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=10.5
Q ss_pred ccCCHHHHHHHHHHHhhCC
Q 012442 266 RGKQVDEALKFLRVMKGEN 284 (463)
Q Consensus 266 ~~~~~~~a~~~~~~m~~~~ 284 (463)
..+++.+|+++|++.....
T Consensus 166 ~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3355666666666655443
No 421
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=54.45 E-value=1.8e+02 Score=27.31 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 012442 220 FAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMK 281 (463)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 281 (463)
..-|++...-.|+.....++++.+.+. .|-.|.-.+| .-+.-+|...+++.+|.+.|-..+
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 344677777788877777777777653 2334422233 455677777888888888887764
No 422
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=54.24 E-value=83 Score=27.33 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=9.6
Q ss_pred HHHHHHHcCCHhHHHHHHHH
Q 012442 295 ALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 295 ll~~~~~~g~~~~a~~~~~~ 314 (463)
+...|.+.|++++|.++|+.
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~ 203 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEP 203 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33444445555555555544
No 423
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=53.76 E-value=1.3e+02 Score=24.92 Aligned_cols=183 Identities=9% Similarity=-0.035 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------cCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 012442 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-------FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (463)
Q Consensus 212 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (463)
|...+...++-++..+.+..-...-...+-.++.+ .+..- +....-.-+..|-..|||.+.-.+|-....
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~-~l~~~~~eie~Ckek~DW~klg~ly~nv~~-- 79 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLS-DLASAVVEIEHCKEKGDWTKLGNLYINVKM-- 79 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHH-HHHHHHHHHHHHhhhccHHHHhhHHhhHHh--
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 012442 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364 (463)
Q Consensus 285 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (463)
+|-+.+++..--......+.+..-....+-|....++-++.-+.+++.+.+ =..+=-
T Consensus 80 -------------gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~----------LGRiGi 136 (233)
T PF14669_consen 80 -------------GCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTL----------LGRIGI 136 (233)
T ss_pred -------------hcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhh----------hhHHHH
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHc--------------CCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 012442 365 TAITMLLDADEPEIAIEIWNYILEN--------------GILPLEASANELLVGLRNLGRLSDVRRFAEE 420 (463)
Q Consensus 365 ~li~~~~~~g~~~~a~~~~~~~~~~--------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 420 (463)
+++..|.+..++.++.++++.|-+. +..+.-...|.-...+.+.|..|.|+.++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 424
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.56 E-value=57 Score=22.28 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=20.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCHH
Q 012442 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLP 148 (463)
Q Consensus 119 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 148 (463)
+++.+.++.--++|+++++.|.++|-.+..
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrGEi~~E 66 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRGEITPE 66 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHH
Confidence 455566777777777777777777765544
No 425
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=53.46 E-value=54 Score=24.13 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=31.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 012442 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (463)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 194 (463)
++++.+.++...++|+++++.|.+.| ..+...-+.|-..+.+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~ 107 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVK 107 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 56788888899999999999999988 6666665555544443
No 426
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.89 E-value=12 Score=33.65 Aligned_cols=95 Identities=12% Similarity=-0.032 Sum_probs=64.3
Q ss_pred ccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 012442 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF 170 (463)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 170 (463)
..|.++.|++.|.......++....|..-.+++.+.++...|++=++...+.++.+..-|-.--.+-.-.|++++|.+.|
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 45677778887777766677777777777777888888888877777766665544444444444445567788888877
Q ss_pred HHHHhCCCCcCHHHH
Q 012442 171 DVMSMHGVEQDVVAV 185 (463)
Q Consensus 171 ~~m~~~g~~~~~~~~ 185 (463)
....+.++.+....|
T Consensus 206 ~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 206 ALACKLDYDEANSAT 220 (377)
T ss_pred HHHHhccccHHHHHH
Confidence 777776655544433
No 427
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=52.86 E-value=1.8e+02 Score=26.33 Aligned_cols=192 Identities=15% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHccCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcC------CHhHHH-------HHHHHHHHhcCCCCC--
Q 012442 261 LITLIRGKQVDEALKFLRVMKGE-NCFPTLKFFSNALDILVKLN------DSTHAV-------QLWDIMMVFHGAFPD-- 324 (463)
Q Consensus 261 i~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g------~~~~a~-------~~~~~~~~~~~~~~~-- 324 (463)
+.++++.|... ...+++-+... .-..+...|..++..+.... ...... +++..+...-|..+.
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred HHHHHHHHHHH-HHcCC-----HhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC
Q 012442 325 SLTYNMIFECL-IKNKR-----VHEVEKFFHEMIKNEW----QPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394 (463)
Q Consensus 325 ~~~~~~li~~~-~~~~~-----~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 394 (463)
......++... ..... .++|.+.|+.....+. ..+...-..++....+.|+.+.-..+++.... ..+
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~ 200 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STS 200 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TST
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCC
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcchhhhHHHHHHHH
Q 012442 395 EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 457 (463)
Q Consensus 395 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~a~~~~~~~~~~ 457 (463)
...-..++.+++...+.+...++++.....+..+... ...++.++...+..+++.+-+.+++
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHHHH
No 428
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=52.81 E-value=28 Score=22.77 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 012442 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159 (463)
Q Consensus 111 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~ 159 (463)
+....++.++..+++..-.+.++..+.+....|..+..+|---++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3444556666666666666666666666666666555555555555444
No 429
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.66 E-value=33 Score=17.82 Aligned_cols=13 Identities=15% Similarity=0.039 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHc
Q 012442 130 EQMWNAVRVMKED 142 (463)
Q Consensus 130 ~~a~~~~~~m~~~ 142 (463)
+.|..+|+.+...
T Consensus 4 ~~~r~i~e~~l~~ 16 (33)
T smart00386 4 ERARKIYERALEK 16 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 430
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=52.65 E-value=1.5e+02 Score=25.46 Aligned_cols=86 Identities=12% Similarity=0.106 Sum_probs=50.9
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-C-----------CCCCHHHHHHHHHHHhCCCCHHHHHHHH
Q 012442 316 MVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN-E-----------WQPTPLNCATAITMLLDADEPEIAIEIW 383 (463)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~li~~~~~~g~~~~a~~~~ 383 (463)
.+..++.-+..-..+++ +...|+..+|+..++.-... | -.|.+.....++..|. .+++++|.+++
T Consensus 185 ~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il 261 (333)
T KOG0991|consen 185 AKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKIL 261 (333)
T ss_pred HHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHH
Confidence 34444444444444443 34456666666655543321 1 1566666777777665 46799999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHH
Q 012442 384 NYILENGILPLEASANELLVGL 405 (463)
Q Consensus 384 ~~~~~~~~~p~~~~~~~li~~~ 405 (463)
.++.+.|+.|.. ..+.+.+.+
T Consensus 262 ~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 262 AELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred HHHHHcCCCHHH-HHHHHHHHH
Confidence 999898887643 444455544
No 431
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=52.55 E-value=98 Score=23.28 Aligned_cols=47 Identities=15% Similarity=0.012 Sum_probs=23.8
Q ss_pred cCCHhHHHHHHHHHHHhcCCCC----------CHHHHHHHHHHHHHcCCHhHHHHHH
Q 012442 302 LNDSTHAVQLWDIMMVFHGAFP----------DSLTYNMIFECLIKNKRVHEVEKFF 348 (463)
Q Consensus 302 ~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~ 348 (463)
.|.+++|..-....|.....-| |...+..|-.++...|++++++.--
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA 78 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSA 78 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3555555555555555444333 2334555666677777776655433
No 432
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=52.32 E-value=88 Score=24.52 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=37.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 135 AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 135 ~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
+...+++.|..-..--..++..+.+.++.-.|.++++.+.+.+...+..|...-|..+...
T Consensus 8 ~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 8 AIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 3445555665333335566666676766677777777777766555555555555665555
No 433
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=52.16 E-value=28 Score=34.95 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=8.3
Q ss_pred hHhhHHHHHHHHHccCC
Q 012442 253 HVLAYETFLITLIRGKQ 269 (463)
Q Consensus 253 ~~~~~~~li~~~~~~~~ 269 (463)
|..+|..=|+.+++..+
T Consensus 837 Na~afgF~is~L~kL~d 853 (1102)
T KOG1924|consen 837 NAQAFGFNISFLCKLRD 853 (1102)
T ss_pred cchhhccchHHHHhhcc
Confidence 44455555555555433
No 434
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.79 E-value=1e+02 Score=31.87 Aligned_cols=162 Identities=18% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHhccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 012442 77 IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156 (463)
Q Consensus 77 ~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 156 (463)
+..|+.-|..-+.....++++.+.+.+...- .-.++|..+.+.|-.+-|+.+.+.=+.+ ...
T Consensus 591 ~~IDptEy~FKlALi~k~ydeVl~lI~ns~L-------vGqaiIaYLqKkgypeiAL~FVkD~~tR-----------F~L 652 (1202)
T KOG0292|consen 591 LTIDPTEYRFKLALLNKKYDEVLHLIKNSNL-------VGQAIIAYLQKKGYPEIALHFVKDERTR-----------FEL 652 (1202)
T ss_pred EeechHHHHHHHHHHhhhhHHHHHHHHhcCc-------ccHHHHHHHHhcCCcceeeeeecCcchh-----------eee
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012442 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA 236 (463)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 236 (463)
+...|+++.|++.-.++ -|..+|..|....... |+.+-|+..|++.+. |+.|--.|.-.|+.++-
T Consensus 653 aLe~gnle~ale~akkl------dd~d~w~rLge~Al~q-gn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL------DDKDVWERLGEEALRQ-GNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred ehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHh-cchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHH
Q ss_pred HHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHH
Q 012442 237 NKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRV 279 (463)
Q Consensus 237 ~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~ 279 (463)
.++.+-...+ + -.........-.|+.++-.++++.
T Consensus 718 ~Km~~iae~r------~--D~~~~~qnalYl~dv~ervkIl~n 752 (1202)
T KOG0292|consen 718 SKMMKIAEIR------N--DATGQFQNALYLGDVKERVKILEN 752 (1202)
T ss_pred HHHHHHHHhh------h--hhHHHHHHHHHhccHHHHHHHHHh
No 435
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.32 E-value=1.4e+02 Score=29.85 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCc
Q 012442 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180 (463)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 180 (463)
..++. ....++...++.+++++...|..|
T Consensus 250 ~~lv~-al~~~d~~~al~~l~~l~~~g~d~ 278 (584)
T PRK14952 250 DDAVD-ALAADDAAALFGAIESVIDAGHDP 278 (584)
T ss_pred HHHHH-HHHcCCHHHHHHHHHHHHHcCCCH
Confidence 33444 334477777888887777666444
No 436
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=51.05 E-value=92 Score=31.07 Aligned_cols=90 Identities=16% Similarity=0.122 Sum_probs=57.9
Q ss_pred HHHHHHHccCCcHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHhcCCCCchHhhH
Q 012442 187 SLLSAICRQENQTSRALEFLNRVKK---IVDPDGDSFAILLEGWEKEGNVE------EANKTFGEMVERFEWNPEHVLAY 257 (463)
Q Consensus 187 ~ll~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~p~~~~~~ 257 (463)
+|+.+|..+ |++..+.++++.... |.+.-...+|..++...+.|.++ .|.+.+++. .+.- |..||
T Consensus 33 sl~eacv~n-~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~-d~~t~ 106 (1117)
T COG5108 33 SLFEACVYN-GDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNG-DSLTY 106 (1117)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCC-cchHH
Confidence 788888888 999999988888755 45555677888888888888754 233333333 2333 45577
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhh
Q 012442 258 ETFLITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 258 ~~li~~~~~~~~~~~a~~~~~~m~~ 282 (463)
..|+.+-..--+-.-..-++.++..
T Consensus 107 all~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 107 ALLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHHHhhcChHhHHhccHHHHHHHH
Confidence 7777666554444444444444433
No 437
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.70 E-value=2.5e+02 Score=27.34 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC
Q 012442 359 TPLNCATAITMLLDADEPEIAIEIWNYILENGILPL 394 (463)
Q Consensus 359 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 394 (463)
+...+..++.+....+....|+.+++++.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 555555666666655556677888888887776544
No 438
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=49.93 E-value=2.1e+02 Score=26.33 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCc
Q 012442 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180 (463)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 180 (463)
...++.+.. .|+..+|.++++.+.+.|..|
T Consensus 247 i~~l~~ai~-~~~~~~a~~~~~~l~~~~~~~ 276 (355)
T TIGR02397 247 LIELLEAIL-NKDTAEALKILDEILESGVDP 276 (355)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 334555544 478888888888888776544
No 439
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=49.83 E-value=1e+02 Score=22.65 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Q 012442 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD--EPEIAIEIWNYILENG 390 (463)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~ 390 (463)
..++.-|...+++++|.+.+.++.-.. -.......++..+...+ .-+....++..+.+.+
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 345566677777777777777664321 12223334444444332 2233344455554443
No 440
>PRK09687 putative lyase; Provisional
Probab=49.73 E-value=1.9e+02 Score=25.75 Aligned_cols=219 Identities=10% Similarity=0.005 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHhCCCCcCHHHH
Q 012442 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKY----DEAVMSFDVMSMHGVEQDVVAV 185 (463)
Q Consensus 110 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~~~ 185 (463)
.+|.......+..+...|.. ++...+..+... .+...-...+.++++.|+. +++...+..+... .++..+-
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~--~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS--KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 34555555555555555542 233333333222 2344444555556666653 3456666555322 4555555
Q ss_pred HHHHHHHHccCCcH-----HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHH
Q 012442 186 NSLLSAICRQENQT-----SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF 260 (463)
Q Consensus 186 ~~ll~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~l 260 (463)
...+.++... +.. ..+...+.... ..++..+-...+.++++.++ .++...+-.+.+. + +...-..-
T Consensus 109 ~~A~~aLG~~-~~~~~~~~~~a~~~l~~~~--~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~-~~~VR~~A 179 (280)
T PRK09687 109 ASAINATGHR-CKKNPLYSPKIVEQSQITA--FDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD----P-NGDVRNWA 179 (280)
T ss_pred HHHHHHHhcc-cccccccchHHHHHHHHHh--hCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----C-CHHHHHHH
Confidence 5555555443 211 11222221111 12344555555555555554 3344444444331 1 22233333
Q ss_pred HHHHHccC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 012442 261 LITLIRGK-QVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK 339 (463)
Q Consensus 261 i~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 339 (463)
+.++.+.+ +...+...+..+... ++..+-...+.++.+.|+. .+...+-..+.. ++ .....+.++.+.|
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcC
Confidence 44444332 123444444444432 3444455555555555553 233333321221 11 1223444555555
Q ss_pred CHhHHHHHHHHHHH
Q 012442 340 RVHEVEKFFHEMIK 353 (463)
Q Consensus 340 ~~~~a~~~~~~~~~ 353 (463)
.. +|...+.++.+
T Consensus 250 ~~-~a~p~L~~l~~ 262 (280)
T PRK09687 250 DK-TLLPVLDTLLY 262 (280)
T ss_pred CH-hHHHHHHHHHh
Confidence 43 45555555544
No 441
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=49.68 E-value=1.1e+02 Score=23.14 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=10.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Q 012442 399 NELLVGLRNLGRLSDVRRFAEEM 421 (463)
Q Consensus 399 ~~li~~~~~~g~~~~a~~~~~~m 421 (463)
..+++...+.|-+++...+++.+
T Consensus 63 r~~~r~A~~~glI~d~e~Wl~m~ 85 (124)
T PF08780_consen 63 RDVFREAFKAGLIDDGEIWLDML 85 (124)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHH
Confidence 44444444444444444433333
No 442
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.45 E-value=1e+02 Score=22.65 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 012442 150 FASIFDSYCGAGKYDEAVMSFDVMSM 175 (463)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (463)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66666666666777777776666654
No 443
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=49.33 E-value=2e+02 Score=25.81 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 012442 222 ILLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 222 ~l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
..+..+...|++..|+++..+..+
T Consensus 132 ~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 132 SRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344555566666666666665544
No 444
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.13 E-value=1.4e+02 Score=25.84 Aligned_cols=57 Identities=18% Similarity=0.056 Sum_probs=34.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHh----hCC-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 258 ETFLITLIRGKQVDEALKFLRVMK----GEN-CFPTLKFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 258 ~~li~~~~~~~~~~~a~~~~~~m~----~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
-.+..-|.+.|++++|.++|+.+. +.| ..+...+...+..++.+.|+.+....+--+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345566666777777777776663 222 233445566667777777777776665544
No 445
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.06 E-value=2.3e+02 Score=26.57 Aligned_cols=59 Identities=14% Similarity=-0.027 Sum_probs=29.2
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012442 185 VNSLLSAICRQENQTSRALEFLNRVKK---IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244 (463)
Q Consensus 185 ~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (463)
+.-+..-|..+ |+++.|++.|.+.+. ..+-.+..|..+|..-.-.|+|.....+..+..
T Consensus 153 ~~Dl~dhy~~c-G~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 153 LEDLGDHYLDC-GQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHh-ccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 44445555555 666666666655444 122223344445555555555555554444443
No 446
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=49.03 E-value=2.4e+02 Score=29.23 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=36.5
Q ss_pred HHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 012442 187 SLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP 251 (463)
Q Consensus 187 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 251 (463)
.++..+.++ |+.+.|.++.++.+...+.=...+.....++.+.-+...=.++-.++..++|-.+
T Consensus 330 ~~vyy~lR~-G~lk~A~~~l~e~~~~~~~l~~~f~~y~~A~~~~~~~~le~qlrl~~~~~l~~~~ 393 (835)
T KOG2168|consen 330 PLVYYLLRC-GDLKAASQFLNENKDFFEKLAELFPTYFNAYAKNLSSKLEKQLRLRLRSELGRNS 393 (835)
T ss_pred HHHHHHHhh-hhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcCCCccccHHHHHHHHHHhcccc
Confidence 356667778 8899998888887663222223333346666665444444444445544444333
No 447
>PRK14136 recX recombination regulator RecX; Provisional
Probab=48.06 E-value=2.1e+02 Score=25.72 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHH
Q 012442 130 EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208 (463)
Q Consensus 130 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 208 (463)
+.+..+++.+.+.+..|..-|....-.. +.+. ..-..|-.++.++||..+..- ..+..+ .. ..++.+..++++
T Consensus 194 e~IE~VIerLke~gYLDDeRFAesyVr~-R~~k-kGp~rIrqELrQKGId~eLIE--qALeei-eE-DE~E~A~~L~eK 266 (309)
T PRK14136 194 DSVEPLLDALEREGWLSDARFAESLVHR-RASR-VGSARIVSELKRHAVGDALVE--SVGAQL-RE-TEFERAQAVWRK 266 (309)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHH-Hhhc-hhHHHHHHHHHHcCCCHHHHH--HHHHhc-cH-hHHHHHHHHHHH
Confidence 4556788888888887655454332222 2233 344567788888887654332 223322 22 445555555554
No 448
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.04 E-value=67 Score=21.95 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=26.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 012442 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187 (463)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 187 (463)
++++.+.++.-.++|+++++.|.+.| ..+...-+.
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~ 70 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKA 70 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 56777888888899999999999888 555444433
No 449
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.88 E-value=2.4e+02 Score=26.30 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC
Q 012442 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181 (463)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 181 (463)
++......++.+... ++...+..+++++.+.|..|.
T Consensus 244 ~~~~~i~~l~~ai~~-~~~~~~~~~~~~l~~~g~~~~ 279 (363)
T PRK14961 244 LNEKQSFLLTDALLK-KDSKKTMLLLNKISSIGIEWE 279 (363)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 455556666666544 889999999999998775554
No 450
>PRK14135 recX recombination regulator RecX; Provisional
Probab=47.37 E-value=2e+02 Score=25.27 Aligned_cols=49 Identities=6% Similarity=-0.022 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 012442 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ 357 (463)
Q Consensus 307 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (463)
....+++. +...|.--|.......+..+.+.+. ..-.++-.++.+.|+.
T Consensus 90 ~Ie~vl~~-l~~~~~ldD~~~a~~~~~~~~~~~~-~g~~~I~~kL~~kGi~ 138 (263)
T PRK14135 90 IISEVIDK-LKEEKYIDDKEYAESYVRTNINTGD-KGPRVIKQKLLQKGIE 138 (263)
T ss_pred HHHHHHHH-HHHcCCCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHcCCC
Confidence 33444444 3445544343333333433333221 2233455555666643
No 451
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.05 E-value=3.6e+02 Score=28.21 Aligned_cols=291 Identities=13% Similarity=0.094 Sum_probs=135.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC
Q 012442 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLS--LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196 (463)
Q Consensus 119 li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 196 (463)
+-..|...|++++|+++-+.- |+ ..++..-...|.+.+++..|-+++.++.+ .|..+.--+...
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~-----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~- 429 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR-----PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEI- 429 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC-----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhc-
Confidence 445667778888887765432 21 22444556678888899999999988853 344444344444
Q ss_pred CcHHHHHHHHHHhhcCCCCCHHHHHH-----HHHHHH-hcCCHH----HHHHHHHHHHHh-------cCCCCchHhhHHH
Q 012442 197 NQTSRALEFLNRVKKIVDPDGDSFAI-----LLEGWE-KEGNVE----EANKTFGEMVER-------FEWNPEHVLAYET 259 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~-----l~~~~~-~~g~~~----~a~~~~~~~~~~-------~~~~p~~~~~~~~ 259 (463)
.+.+....++.+=.+.++|...+-.. ++..|. +.++.+ ++..-++.-.+. ....-.+...+.+
T Consensus 430 ~~~~~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nret 509 (911)
T KOG2034|consen 430 NQERALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRET 509 (911)
T ss_pred CCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHH
Confidence 55443333333322234444333322 222222 222222 222222211110 0000001122333
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHc
Q 012442 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL-TYNMIFECLIKN 338 (463)
Q Consensus 260 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~ 338 (463)
....+...|+.+++..+-.-|. -|..++..+.+.+.+++|.+++..- ..|... -|... ...
T Consensus 510 v~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~-----~~~el~yk~ap~----Li~ 571 (911)
T KOG2034|consen 510 VYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQ-----RNPELFYKYAPE----LIT 571 (911)
T ss_pred HHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhc-----cchhhHHHhhhH----HHh
Confidence 4445555566666555444333 2566777888888888888887661 112111 11111 111
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHH
Q 012442 339 KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD---EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVR 415 (463)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 415 (463)
..+.+....+....+. ........++..+.+.+ ....+....+-....--.-+...+|.++..|++..+-+.-.
T Consensus 572 ~~p~~tV~~wm~~~d~---~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~ 648 (911)
T KOG2034|consen 572 HSPKETVSAWMAQKDL---DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLL 648 (911)
T ss_pred cCcHHHHHHHHHcccc---CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHH
Confidence 2333333333333322 22333344444454442 33444444444443322346677888887777665444332
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 416 RFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 416 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
.++.....+-. ...-....++.|.+.+..
T Consensus 649 -~le~~~~~~~~-~~YDl~~alRlc~~~~~~ 677 (911)
T KOG2034|consen 649 -YLEIIKFMKSR-VHYDLDYALRLCLKFKKT 677 (911)
T ss_pred -HHHHHhhcccc-ceecHHHHHHHHHHhCcc
Confidence 23322211111 233344455666666544
No 452
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=46.83 E-value=2.2e+02 Score=25.76 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=37.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 012442 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (463)
Q Consensus 223 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (463)
|.-+.-+.|+..+|.+.|+.+.+...+.. -......|+.++....-+.++..++.+..+..
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t-~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLT-MLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44455567888888888888776522111 12234566777777766666666666655544
No 453
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=46.82 E-value=1.9e+02 Score=24.96 Aligned_cols=115 Identities=11% Similarity=-0.060 Sum_probs=77.2
Q ss_pred CCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 012442 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDV 172 (463)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 172 (463)
.+++.|+..|-.+....|....-|+.=+-.+.+..+++.+..--....+..+........+..+......+++|+.++.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 56677777776555433444466777777788888888887777666666554555666777888888999999999988
Q ss_pred HH----hCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHH
Q 012442 173 MS----MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208 (463)
Q Consensus 173 m~----~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 208 (463)
.. ...+.+.....+.|..+--+. -...+..++.+.
T Consensus 104 a~sl~r~~~~~~~~di~~~L~~ak~~~-w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 104 AYSLLREQPFTFGDDIPKALRDAKKKR-WEVSEEKRIRQE 142 (284)
T ss_pred HHHHHhcCCCCCcchHHHHHHHHHhCc-cchhHHHHHHHH
Confidence 74 333555566677777665554 455555555444
No 454
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=46.75 E-value=70 Score=23.51 Aligned_cols=63 Identities=6% Similarity=0.046 Sum_probs=33.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCcc
Q 012442 364 ATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG--RLSDVRRFAEEMLNRRILI 428 (463)
Q Consensus 364 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~ 428 (463)
..++..|...|+.++|...+.++.-.. -.......++......+ .-+.+..++..+.+.+..+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~ 70 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLIS 70 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCC
Confidence 456667777789999988887753221 11223334444444442 2334456677777766543
No 455
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.57 E-value=2.1e+02 Score=28.96 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=19.1
Q ss_pred hCCCCCCHHHHHHHHHhccCCchHHHHHHHH
Q 012442 74 CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW 104 (463)
Q Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~ 104 (463)
..|+..+......++..+.|+...|...++.
T Consensus 195 ~egi~i~~~al~~La~~s~gdlr~al~~Lek 225 (614)
T PRK14971 195 KEGITAEPEALNVIAQKADGGMRDALSIFDQ 225 (614)
T ss_pred HcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4566666666655655666666666666654
No 456
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=46.36 E-value=65 Score=21.56 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=21.8
Q ss_pred CchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 012442 94 SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKN 126 (463)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 126 (463)
+.+.|..++......-+.++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 345566666666656677777888777766654
No 457
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=46.28 E-value=71 Score=19.87 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=18.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 012442 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188 (463)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 188 (463)
+.-++.+.|++++|.+..+.+++. +|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHH
Confidence 445556666666666666666654 4554444333
No 458
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=45.90 E-value=1.6e+02 Score=29.03 Aligned_cols=150 Identities=11% Similarity=-0.081 Sum_probs=97.3
Q ss_pred CCCCHHHHHHHHHhc----cCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CHHHHH
Q 012442 77 IIPTPDLVHEVLQLS----YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVL-SLPTFA 151 (463)
Q Consensus 77 ~~~~~~~~~~~l~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~ 151 (463)
--|+..+...++... ....+-+..+|..|.....|-=.+.|.-.-.....|+...|...+.......+. .....-
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 345666655555522 233456777777776533333333343333344568888888887765544431 222344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 012442 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228 (463)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (463)
.|.+...+.|-..+|..++.+.+... ....-++..+-+++... .+++.|++.|+...+..+.+.+.-+.|...-|
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l-~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLAL-KNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHH-hhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 56667777788889999888877654 44556777788888888 99999999999987766666777676665544
No 459
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.89 E-value=2e+02 Score=24.82 Aligned_cols=21 Identities=0% Similarity=0.166 Sum_probs=14.2
Q ss_pred HHcCCHhHHHHHHHHHHHCCC
Q 012442 336 IKNKRVHEVEKFFHEMIKNEW 356 (463)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~ 356 (463)
+..+++.+|.++|++.....+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445677778888777766543
No 460
>PRK11619 lytic murein transglycosylase; Provisional
Probab=45.76 E-value=3.5e+02 Score=27.65 Aligned_cols=331 Identities=10% Similarity=-0.033 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhhHHHHHhhCCCCCCHHHHHHHHHhccCCchHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhCCChHH
Q 012442 54 RIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR--GQRLSPYAWNLMVDVLGKNGRFEQ 131 (463)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~ 131 (463)
......+................-.|-.....-..-..........++-..+.+ +.+.....-...+..+++.+++..
T Consensus 38 ~~A~~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 38 QQIKQAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHH
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc
Q 012442 132 MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211 (463)
Q Consensus 132 a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 211 (463)
.+.++..- +.+...-.....+....|+.++|.+....+-..| ......++.++..+.+.
T Consensus 118 ~~~~~~~~----p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~---------------- 176 (644)
T PRK11619 118 LLAFSPEK----PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQS---------------- 176 (644)
T ss_pred HHHhcCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHc----------------
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH
Q 012442 212 IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF 291 (463)
Q Consensus 212 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 291 (463)
...+....-.=+......|+...|..+...+... .......++..+.+-.++........ .......
T Consensus 177 -g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~------~~~~a~a~~al~~~p~~~~~~~~~~~------~~~~~~~ 243 (644)
T PRK11619 177 -GKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPAD------YQTIASALIKLQNDPNTVETFARTTG------PTDFTRQ 243 (644)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChh------HHHHHHHHHHHHHCHHHHHHHhhccC------CChhhHH
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012442 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR--VHEVEKFFHEMIKNEWQPTPLNCATAITM 369 (463)
Q Consensus 292 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 369 (463)
+..+.-.-....+.+.|...+.......+..+.......-.-++.-... ..++...+...... ..+......-+..
T Consensus 244 ~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~ 321 (644)
T PRK11619 244 MAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRM 321 (644)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHH
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 012442 370 LLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM 421 (463)
Q Consensus 370 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 421 (463)
-.+.++++.+...+..|....-.-..--|. +.+++...|+.++|..+|+++
T Consensus 322 Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW-~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 322 ALGTGDRRGLNTWLARLPMEAKEKDEWRYW-QADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHccCHHHHHHHHHhcCHhhccCHhhHHH-HHHHHHHcCCHHHHHHHHHHH
No 461
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.67 E-value=5.9e+02 Score=30.30 Aligned_cols=151 Identities=7% Similarity=-0.027 Sum_probs=94.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 012442 118 LMVDVLGKNGRFEQMWNAVRVMKEDGV---LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (463)
Q Consensus 118 ~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 194 (463)
.+..+=-+++.+.+|...++.-..... .....|..+...|+.-+++|...-+...-.. .|+ .+.- |-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~q-il~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQQ-ILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHHH-HHHHHh
Confidence 344455677888888888887411111 1233445555589999999888877764211 232 2332 333344
Q ss_pred cCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHH-HHHHHccCCHHHH
Q 012442 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF-LITLIRGKQVDEA 273 (463)
Q Consensus 195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~l-i~~~~~~~~~~~a 273 (463)
. |++..|...|+.+.+.-++...+++-+++.....|.++...-..+....+ .++....|+.+ +.+--+.++++..
T Consensus 1462 ~-g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~---~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1462 S-GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN---RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred h-ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc---cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 5 99999999999998866666888888888888888888887766666543 22233333322 3444566777776
Q ss_pred HHHHH
Q 012442 274 LKFLR 278 (463)
Q Consensus 274 ~~~~~ 278 (463)
.....
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 66654
No 462
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.85 E-value=3.6e+02 Score=27.56 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=19.0
Q ss_pred hCCCCCCHHHHHHHHHhccCCchHHHHHHHH
Q 012442 74 CTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW 104 (463)
Q Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~ 104 (463)
..|+..+...+..+...+.|++..|+.+++.
T Consensus 198 ~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQ 228 (700)
T PRK12323 198 EEGIAHEVNALRLLAQAAQGSMRDALSLTDQ 228 (700)
T ss_pred HcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4456666665555555666666666666654
No 463
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=44.80 E-value=3.5e+02 Score=27.40 Aligned_cols=182 Identities=12% Similarity=0.051 Sum_probs=89.2
Q ss_pred HHHHHHHHhcCCCC----CCHHHHHHHHHHHH-hCCChHHHHHHHHHHHHcCC----CC--HHHHHHHHHHHHhcCChHH
Q 012442 97 SAVDFFRWAGRGQR----LSPYAWNLMVDVLG-KNGRFEQMWNAVRVMKEDGV----LS--LPTFASIFDSYCGAGKYDE 165 (463)
Q Consensus 97 ~a~~~~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~----~~--~~~~~~li~~~~~~g~~~~ 165 (463)
.|++.++.+.+..+ .+..++-.+...+. ...+++.|...+++...... .+ -.....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34555555443222 23345556666655 55777888877776533221 11 112334556666665555
Q ss_pred HHHHHHHHHhC----CCCcCHHHHHHH-HHHHHccCCcHHHHHHHHHHhhc--C--CCCCHHHHHHHHHHHH--hcCCHH
Q 012442 166 AVMSFDVMSMH----GVEQDVVAVNSL-LSAICRQENQTSRALEFLNRVKK--I--VDPDGDSFAILLEGWE--KEGNVE 234 (463)
Q Consensus 166 A~~~~~~m~~~----g~~~~~~~~~~l-l~~~~~~~~~~~~a~~~~~~~~~--~--~~~~~~~~~~l~~~~~--~~g~~~ 234 (463)
|...+++..+. +..+-...|..+ +..+... +++..|.+.++.+.. . ..+-..++..++.+.. ..+..+
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~-~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQH-KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 77777765532 111222233333 2233334 677777777777654 2 2333444444444443 344455
Q ss_pred HHHHHHHHHHHh---c----CCCCchHhhHHHHHHHHH--ccCCHHHHHHHHHHH
Q 012442 235 EANKTFGEMVER---F----EWNPEHVLAYETFLITLI--RGKQVDEALKFLRVM 280 (463)
Q Consensus 235 ~a~~~~~~~~~~---~----~~~p~~~~~~~~li~~~~--~~~~~~~a~~~~~~m 280 (463)
++.+.++++... . ...++-..+|..++..++ ..|+++.+...++++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 566655555221 0 012224455666655443 446655555555544
No 464
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=44.71 E-value=2.1e+02 Score=28.06 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=32.7
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHhccCCchHHHHHHHHhcC
Q 012442 68 IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGR 107 (463)
Q Consensus 68 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~ 107 (463)
+...+.+.++.-+...+..+.+...|...+|+.+++.+..
T Consensus 187 L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~ 226 (515)
T COG2812 187 LAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIA 226 (515)
T ss_pred HHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHH
Confidence 5556667888888988888888888999999999987764
No 465
>PLN03025 replication factor C subunit; Provisional
Probab=44.69 E-value=2.4e+02 Score=25.57 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH
Q 012442 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182 (463)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 182 (463)
.....++.... .+++++|...+.++...|..|..
T Consensus 226 ~~i~~~i~~~~-~~~~~~a~~~l~~ll~~g~~~~~ 259 (319)
T PLN03025 226 LHVKNIVRNCL-KGKFDDACDGLKQLYDLGYSPTD 259 (319)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 33444444433 46677777777777766666543
No 466
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=44.62 E-value=2.6e+02 Score=25.96 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=45.6
Q ss_pred CHHHHHHH---HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc
Q 012442 146 SLPTFASI---FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211 (463)
Q Consensus 146 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 211 (463)
|...|.++ |..+.+.|.+..|+++.+-+......-|......+|+.|+-..++++-.+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444443 5667888888888888888887764446666667777776554777777777776443
No 467
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.57 E-value=1.8e+02 Score=24.13 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=33.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 012442 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (463)
Q Consensus 223 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (463)
|.......|.+|+|+..++..... ++.+ .....-.+.+...|+-++|..-|++..+.+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~-~w~~---~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEE-SWAA---IVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccc-cHHH---HHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 445556667777777776666543 2221 123333456666677777777777666654
No 468
>PRK14700 recombination factor protein RarA; Provisional
Probab=44.20 E-value=2.4e+02 Score=25.32 Aligned_cols=106 Identities=11% Similarity=0.007 Sum_probs=63.5
Q ss_pred CCCCCHHHHHHHHHhccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-C---CCHHHHH
Q 012442 76 GIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-V---LSLPTFA 151 (463)
Q Consensus 76 ~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~---~~~~~~~ 151 (463)
.+..+......+...+.|+...|+..++.+..... ..+...--.+.+++..... . .+...+-
T Consensus 62 ~~~i~~~al~~ia~~a~GDaR~aLN~LE~a~~~~~--------------~~~~~~it~~~~~~~~~~~~~~yDk~gd~HY 127 (300)
T PRK14700 62 KFKIDDGLYNAMHNYNEGDCRKILNLLERMFLIST--------------RGDEIYLNKELFDQAVGETSRDFHREGKEFY 127 (300)
T ss_pred CCCcCHHHHHHHHHhcCCHHHHHHHHHHHHHhhcc--------------ccCCCccCHHHHHHHHhHHHhcccCCcchhH
Confidence 46788999999999999999999999997542110 0000000112222222111 1 1222233
Q ss_pred HHHHHHHh---cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 152 SIFDSYCG---AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 152 ~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
-+|+++.+ -.|.+.|+-.+..|++.|-.|.-..-..++.+.-.-
T Consensus 128 d~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDI 174 (300)
T PRK14700 128 EQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDI 174 (300)
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 44555544 468899999999999998777666666666665544
No 469
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.09 E-value=1.1e+02 Score=21.58 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=8.3
Q ss_pred HHHcCCHhHHHHHHHHH
Q 012442 299 LVKLNDSTHAVQLWDIM 315 (463)
Q Consensus 299 ~~~~g~~~~a~~~~~~~ 315 (463)
....|++++|.+.+++.
T Consensus 51 ~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 34445555555555444
No 470
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.08 E-value=3.1e+02 Score=26.66 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHH
Q 012442 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVA 184 (463)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 184 (463)
...++.+ .+.++.+.|..++..|...|..|....
T Consensus 247 i~~li~s-i~~~d~~~Al~~l~~ll~~Gedp~~i~ 280 (472)
T PRK14962 247 VRDYINA-IFNGDVKRVFTVLDDVYYSGKDYEVLI 280 (472)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 3344443 345778888888888887776665443
No 471
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=43.81 E-value=2.3e+02 Score=25.10 Aligned_cols=148 Identities=10% Similarity=0.019 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-----
Q 012442 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL----- 302 (463)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----- 302 (463)
+..+|.++|....+. |. ......|...|.. ..+..+|...|++..+.|..+...+...+-..|..-
T Consensus 92 ~~~~A~~~~~~~a~~-g~----~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 92 DKTKAADWYRCAAAD-GL----AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred cHHHHHHHHHHHhhc-cc----HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc
Confidence 355555555544432 21 1133334444433 235666666666666666333211222233333221
Q ss_pred C--CHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCC--
Q 012442 303 N--DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK----NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD-- 374 (463)
Q Consensus 303 g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 374 (463)
- +...|...+..+ ...+ +......+...|.. ..+.++|...|.+..+.|. ......+. .+...|
T Consensus 167 ~~~~~~~A~~~~~~a-a~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g 238 (292)
T COG0790 167 VAYDDKKALYLYRKA-AELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEG 238 (292)
T ss_pred ccHHHHhHHHHHHHH-HHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCC
Confidence 1 223566666663 3232 23333333333332 2367778888888777763 22222222 333333
Q ss_pred -------------CHHHHHHHHHHHHHcCCC
Q 012442 375 -------------EPEIAIEIWNYILENGIL 392 (463)
Q Consensus 375 -------------~~~~a~~~~~~~~~~~~~ 392 (463)
+...|...+......+..
T Consensus 239 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 239 VKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred chhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 556666666666665544
No 472
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=43.41 E-value=3.3e+02 Score=26.77 Aligned_cols=37 Identities=5% Similarity=0.099 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH
Q 012442 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182 (463)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 182 (463)
.+......++.+..+ |+...|+.+++++...|..|..
T Consensus 256 ~~~~~if~L~~ai~~-~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 256 VDSSVIIEFVEYIIH-RETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 444555566665554 8999999999999998866543
No 473
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.33 E-value=3.4e+02 Score=26.78 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH
Q 012442 144 VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182 (463)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 182 (463)
..+......++.++.. |+.+.+++++++|...|..+..
T Consensus 243 ~~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 243 TIEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred CCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 3455556666666554 8889999999999998877653
No 474
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.21 E-value=2.1e+02 Score=24.45 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 012442 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407 (463)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 407 (463)
|..+++++.-..+ .+-.+.++.+.+-.+.|+-... ++.++...|+.+.|..+++...- ...+......++.. ..
T Consensus 79 ~~~~~~g~W~LD~-~~~~~A~~~L~~ps~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~~p--~l~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDH-GDFEEALELLSHPSLIPWFPDK--ILQALLRRGDPKLALRYLRAVGP--PLSSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHHHhCh-HhHHHHHHHhCCCCCCcccHHH--HHHHHHHCCChhHHHHHHHhcCC--CCCCHHHHHHHHHH-HH
Q ss_pred CCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhc-chhhhHHHHHHH
Q 012442 408 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES-RSMRDIFDSLER 456 (463)
Q Consensus 408 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~a~~~~~~~~~ 456 (463)
+|.+.+|..+-+...+ .-....+..+++.+.... +. ..+.+++.
T Consensus 153 ~~~v~EAf~~~R~~~~---~~~~~l~e~l~~~~~~~~~~~--~~~~~Ll~ 197 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPD---ELRRRLFEQLLEHCLEECARS--GRLDELLS 197 (226)
T ss_pred cCCHHHHHHHHHhCch---hhhHHHHHHHHHHHHHHhhhh--hHHHHHHh
No 475
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.09 E-value=3.7e+02 Score=27.20 Aligned_cols=92 Identities=11% Similarity=0.142 Sum_probs=61.1
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHh------HHHHHHHHHHHCCCCCCHHHHHHH
Q 012442 294 NALDILVKLNDSTHAVQLWDIMMVFH-GAFPDSLTYNMIFECLIKNKRVH------EVEKFFHEMIKNEWQPTPLNCATA 366 (463)
Q Consensus 294 ~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 366 (463)
+|+.+|...|++..+.++++...... |-+.-...||..|..+.+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 88999999999999999998853322 22233567888888889988754 3445555544 44588888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH
Q 012442 367 ITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 367 i~~~~~~g~~~~a~~~~~~~~~ 388 (463)
+++-..--+-.-..-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8776653333334444444443
No 476
>PRK10941 hypothetical protein; Provisional
Probab=42.88 E-value=2.4e+02 Score=24.95 Aligned_cols=52 Identities=15% Similarity=0.027 Sum_probs=20.3
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 262 ITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
.+|.+.++++.|+++.+.+.... +.+..-+.--.-.|.+.|.+..|..=++.
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~ 240 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSY 240 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 33444444444444444444432 11222233333334444444444444433
No 477
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=42.57 E-value=3.8e+02 Score=27.16 Aligned_cols=195 Identities=12% Similarity=0.106 Sum_probs=113.4
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CC---CHHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCcCHH
Q 012442 109 QRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-VL---SLPTFASIFDSYC-GAGKYDEAVMSFDVMSMHGVEQDVV 183 (463)
Q Consensus 109 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~---~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~ 183 (463)
.+.+...|..||.. |++-++-+.+.. ++ ...++-.+...+. ...++++|+..+.+....--.++..
T Consensus 26 ~~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~ 96 (608)
T PF10345_consen 26 SEEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT 96 (608)
T ss_pred ChhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 35566677777754 455555555433 22 3446666666666 6788999999999875432223222
Q ss_pred -----HHHHHHHHHHccCCcHHHHHHHHHHhhc---C--CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhcC--CC
Q 012442 184 -----AVNSLLSAICRQENQTSRALEFLNRVKK---I--VDPDGDSFAIL-LEGWEKEGNVEEANKTFGEMVERFE--WN 250 (463)
Q Consensus 184 -----~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~--~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~--~~ 250 (463)
....++..+.+. +... |....++..+ + ..+-...|..+ +..+...++...|.+.++.+..... ..
T Consensus 97 d~k~~~~~ll~~i~~~~-~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d 174 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKT-NPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD 174 (608)
T ss_pred HHHHHHHHHHHHHHHhc-CHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC
Confidence 122455666665 5444 8888888655 2 12223334444 3344444899999999998876422 22
Q ss_pred CchHhhHHHHHHHHH--ccCCHHHHHHHHHHHhhCC---------CCCCHHHHHHHHHHHH--HcCCHhHHHHHHHHH
Q 012442 251 PEHVLAYETFLITLI--RGKQVDEALKFLRVMKGEN---------CFPTLKFFSNALDILV--KLNDSTHAVQLWDIM 315 (463)
Q Consensus 251 p~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~---------~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~ 315 (463)
| ...++-.++.+.. +.+..+++.+.+..+.... ..|...+|..+++.++ ..|+++.+...++++
T Consensus 175 ~-~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 175 P-AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred H-HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 3344444444444 3455677777777663322 1334567777766654 567766666665554
No 478
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.10 E-value=2.9e+02 Score=25.68 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012442 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189 (463)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 189 (463)
.....++++. ..|+..+|..+++.+...|..| ......++
T Consensus 236 ~~if~l~~ai-~~~~~~~a~~~~~~l~~~~~~~-~~il~~l~ 275 (367)
T PRK14970 236 DTYINVTDLI-LENKIPELLLAFNEILRKGFDG-HHFIAGLA 275 (367)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCH-HHHHHHHH
Confidence 3344466655 4478999999999988877655 33333333
No 479
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=41.44 E-value=1.6e+02 Score=23.76 Aligned_cols=63 Identities=11% Similarity=0.033 Sum_probs=40.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHH
Q 012442 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSD 413 (463)
Q Consensus 350 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 413 (463)
.+.+.|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|...-+..+.+.|-+.+
T Consensus 16 ~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 16 LCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 34556766665544 4444554556666788888888887766666665556667777776543
No 480
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.37 E-value=81 Score=30.01 Aligned_cols=22 Identities=9% Similarity=-0.142 Sum_probs=10.0
Q ss_pred HHHHHcCCHhHHHHHHHHHHHC
Q 012442 333 ECLIKNKRVHEVEKFFHEMIKN 354 (463)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~ 354 (463)
.++.+.+++..|+.=+.++++.
T Consensus 46 ~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 46 LAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhheeechhhhHHHHHHhhhhc
Confidence 3444444444444444444443
No 481
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=41.13 E-value=1.3e+02 Score=23.05 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcch-hhhHHHHH
Q 012442 431 VTMHKLKKAFYNESRS-MRDIFDSL 454 (463)
Q Consensus 431 ~~~~~ll~~~~~~g~~-a~~~~~~~ 454 (463)
..|+.++..+.+.|+. +.+.++.+
T Consensus 91 ~~y~~~~~~A~~e~d~~~~~~f~~i 115 (134)
T cd01041 91 EMYPEFAEVAEEEGFKEAARSFEAI 115 (134)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555555555555 33444433
No 482
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.00 E-value=1.7e+02 Score=22.92 Aligned_cols=61 Identities=13% Similarity=0.137 Sum_probs=32.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCH
Q 012442 350 EMIKNEWQPTPLNCATAITMLLD-ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL 411 (463)
Q Consensus 350 ~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 411 (463)
.+.+.|++.+..-. .++..+.. .+..-.|.++++.+.+.+...+..|.-.-+..+.+.|-+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34555655554433 33334433 244566777777777666555555444445555555544
No 483
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.99 E-value=1.6e+02 Score=22.38 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHH
Q 012442 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLR 278 (463)
Q Consensus 235 ~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~ 278 (463)
.+.++|..|..+ |+--.-+..|......+...|++++|.++|.
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555556555553 4444344455555555555566666655554
No 484
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.39 E-value=4.2e+02 Score=27.11 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=19.9
Q ss_pred HhhCCCCCCHHHHHHHHHhccCCchHHHHHHHH
Q 012442 72 LACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRW 104 (463)
Q Consensus 72 l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~ 104 (463)
+...|+..+......+...+.|+...|+.+++.
T Consensus 190 l~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQ 222 (702)
T PRK14960 190 LEKEQIAADQDAIWQIAESAQGSLRDALSLTDQ 222 (702)
T ss_pred HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344566666666666666666666666666554
No 485
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.32 E-value=1.7e+02 Score=23.65 Aligned_cols=57 Identities=12% Similarity=-0.002 Sum_probs=34.3
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 139 m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
++..|......-..++..+...++.-.|.++++.+.+.+...+..|..--|..+.+.
T Consensus 17 L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~ 73 (169)
T PRK11639 17 CAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQ 73 (169)
T ss_pred HHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHC
Confidence 344454333334455555555566667777777777776666666666666666665
No 486
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=40.05 E-value=3.2e+02 Score=25.57 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=14.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 363 CATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 363 ~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
|+.++....+.+.+-.+.+.++..-+
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~ 240 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYD 240 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhc
Confidence 55555555555555555555555443
No 487
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.05 E-value=2.6e+02 Score=24.55 Aligned_cols=192 Identities=12% Similarity=0.090 Sum_probs=0.0
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhC----CCCCCHHHHHHHHHHHHHcC
Q 012442 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE----NCFPTLKFFSNALDILVKLN 303 (463)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~~~~g 303 (463)
.+.+++++|.+++.+-... +.+.|+..-|.++-.-+.+. +.+.|......++..+...+
T Consensus 1 v~~kky~eAidLL~~Ga~~-----------------ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~ 63 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALI-----------------LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFP 63 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHH-----------------HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-
T ss_pred CccccHHHHHHHHHHHHHH-----------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q ss_pred CHh-HHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHH
Q 012442 304 DST-HAVQLWDIMMVFH----GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI 378 (463)
Q Consensus 304 ~~~-~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 378 (463)
.-+ .-.++.+.+++-. .-.-+......+...|.+.|++.+|...|-.-. .++...+..++......|...+
T Consensus 64 ~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~~~e 139 (260)
T PF04190_consen 64 PEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGYPSE 139 (260)
T ss_dssp TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--
T ss_pred CCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcCCcc
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHC-------------CCccCHHHHHHH--HHHHHHh
Q 012442 379 AIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR-------------RILIYEVTMHKL--KKAFYNE 443 (463)
Q Consensus 379 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------~~~~~~~~~~~l--l~~~~~~ 443 (463)
+ .......+--|...|+...|...++...+. ++.++....|-+ +-..++.
T Consensus 140 ~---------------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~ 204 (260)
T PF04190_consen 140 A---------------DLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCER 204 (260)
T ss_dssp H---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHH
T ss_pred h---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhc
Q ss_pred cchhhhHHHHHHHH
Q 012442 444 SRSMRDIFDSLERR 457 (463)
Q Consensus 444 g~~a~~~~~~~~~~ 457 (463)
+.. ..+..+.++
T Consensus 205 ~~~--~~F~~L~~~ 216 (260)
T PF04190_consen 205 DNL--PLFKKLCEK 216 (260)
T ss_dssp T-H--HHHHHHHHH
T ss_pred CcH--HHHHHHHHH
No 488
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=39.91 E-value=1.3e+02 Score=21.16 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=20.0
Q ss_pred CCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 012442 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (463)
Q Consensus 250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (463)
.|+|...-..+...+...|++++|++.+-++.+..
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45555566666666666666666666666665543
No 489
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=39.45 E-value=4.7e+02 Score=27.36 Aligned_cols=44 Identities=11% Similarity=-0.013 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 270 VDEALKFLRVMK-GENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315 (463)
Q Consensus 270 ~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 315 (463)
.++..+.+++.. ..|+..+......+.. ...|++.+|+.++++.
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQA 224 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQA 224 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHH
Confidence 345555555543 3455555555544443 2357777777776664
No 490
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=39.09 E-value=75 Score=30.22 Aligned_cols=88 Identities=9% Similarity=-0.058 Sum_probs=46.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH-HHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 012442 154 FDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS-LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN 232 (463)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 232 (463)
...+.+.++++.|..++.+..+. .||...|-+ --.++.+. +++..|+.=+....+.-+.....|.--..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~-e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKV-ESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheee-chhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 44455566777777777777664 454444332 23555566 666666655555444223233333333444445555
Q ss_pred HHHHHHHHHHHH
Q 012442 233 VEEANKTFGEMV 244 (463)
Q Consensus 233 ~~~a~~~~~~~~ 244 (463)
+.+|+..|+...
T Consensus 88 ~~~A~~~l~~~~ 99 (476)
T KOG0376|consen 88 FKKALLDLEKVK 99 (476)
T ss_pred HHHHHHHHHHhh
Confidence 555555555553
No 491
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=38.68 E-value=3e+02 Score=24.97 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=25.7
Q ss_pred HHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 299 LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351 (463)
Q Consensus 299 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 351 (463)
..+.|+..+|.+.|+.+++...+..-......|+.++....-+.++..++-+-
T Consensus 285 ARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 285 ARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666666666665554332211222334555555544444444444433
No 492
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=37.83 E-value=1.1e+02 Score=20.58 Aligned_cols=33 Identities=12% Similarity=-0.001 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 012442 128 RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160 (463)
Q Consensus 128 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~ 160 (463)
+.+.|..++..++.....++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 457777888888777667888899888766554
No 493
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=37.80 E-value=3.5e+02 Score=25.34 Aligned_cols=91 Identities=10% Similarity=0.107 Sum_probs=60.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHH------------HHHHHHcCCHhHHHHHHHHHHHhcCCCCCH
Q 012442 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA------------LDILVKLNDSTHAVQLWDIMMVFHGAFPDS 325 (463)
Q Consensus 258 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 325 (463)
..|...+-..|+.++|..++.++. ..||.++ ++.|.-.+|+-.|.-+-+.+-.+.--.|+.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~ 207 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV 207 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH
Confidence 345566667788888888877653 3344333 466777788888877766643333224444
Q ss_pred -----HHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 012442 326 -----LTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355 (463)
Q Consensus 326 -----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 355 (463)
..|+.+++.....+.+=.+.+.|+.....|
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 357888887777888888888888887654
No 494
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=37.71 E-value=1.9e+02 Score=24.13 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHH
Q 012442 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272 (463)
Q Consensus 218 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~ 272 (463)
...+.+++.|...|+++.|.++|.-+.+..+++.. ..|..=+..+.+.+.-..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR--~~W~iG~eIL~~~~~~~~ 94 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIR--SLWGIGAEILMRRGEQNS 94 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChH--hcchHHHHHHHcCCCcch
Confidence 34566788888888888888888887764333332 134444444444444333
No 495
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=37.63 E-value=1.4e+02 Score=20.77 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=23.8
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHh
Q 012442 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306 (463)
Q Consensus 265 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 306 (463)
....+.+++.++++.+...| ...|..+.+++...|...
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTD 78 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchH
Confidence 34456677777777777776 556666666665555443
No 496
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=37.61 E-value=1.8e+02 Score=22.09 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=16.9
Q ss_pred HHHHHHHHHhCCCCcCHHHH-HHHHHHHHccCCcHHHHHHHHH
Q 012442 166 AVMSFDVMSMHGVEQDVVAV-NSLLSAICRQENQTSRALEFLN 207 (463)
Q Consensus 166 A~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~~~~~~~a~~~~~ 207 (463)
..++|..|...||--....| ......+-.. |++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~-g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAA-GRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 44455555544443333222 2222222233 55555555543
No 497
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.48 E-value=2.1e+02 Score=25.70 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=47.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----------CCCHHHH
Q 012442 345 EKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN----------LGRLSDV 414 (463)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----------~g~~~~a 414 (463)
.++|+.+.+.++.|.-..|..+.-.+.+.=.+.+...+|+.+.... .-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4677788888888888888888777888888888888888876421 225555555442 3555555
Q ss_pred HHHHH
Q 012442 415 RRFAE 419 (463)
Q Consensus 415 ~~~~~ 419 (463)
+++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55543
No 498
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=37.19 E-value=83 Score=23.24 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=26.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHH
Q 012442 366 AITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412 (463)
Q Consensus 366 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 412 (463)
++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44444444555566667777766655555555444555555555443
No 499
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=37.14 E-value=1.1e+02 Score=27.44 Aligned_cols=78 Identities=9% Similarity=-0.046 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH
Q 012442 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS-IFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVN 186 (463)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 186 (463)
....|+..|...+....+.|.+.+.-.+|.++...++.|+..|-. --.-+...++++.+..+|..-++.+ +.++..|.
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~ 180 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWI 180 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHH
Confidence 456788889888888888889999999999999998887776654 3344667788999999998887665 33444443
No 500
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.92 E-value=4.2e+02 Score=26.07 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC
Q 012442 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181 (463)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 181 (463)
......++.++ ..++.++|+.+++++...|..|.
T Consensus 242 ~~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 242 QERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 33455556655 45889999999999988885554
Done!