Query 012442
Match_columns 463
No_of_seqs 628 out of 3238
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 09:32:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.9E-33 1.3E-37 276.0 36.8 369 77-455 113-577 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.8E-33 3E-37 273.5 38.9 367 79-456 82-544 (597)
3 4g26_A Pentatricopeptide repea 100.0 2E-33 6.7E-38 267.5 24.4 207 236-444 9-224 (501)
4 4g26_A Pentatricopeptide repea 100.0 5.6E-32 1.9E-36 257.5 25.4 203 202-407 9-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.8E-27 9.7E-32 221.1 43.0 343 90-443 44-386 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 7.2E-27 2.5E-31 218.3 43.5 355 90-455 10-366 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2.4E-23 8.1E-28 198.4 40.3 323 102-437 15-370 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.5E-23 5.3E-28 199.7 37.7 347 90-446 37-441 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.5E-22 5E-27 196.3 35.3 355 90-456 17-477 (514)
10 3ieg_A DNAJ homolog subfamily 99.9 8.9E-21 3E-25 174.6 40.2 318 112-441 2-351 (359)
11 3fp2_A TPR repeat-containing p 99.9 3.4E-20 1.2E-24 180.7 39.9 358 90-456 36-490 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 2.4E-20 8.1E-25 171.7 35.2 307 90-405 14-350 (359)
13 2gw1_A Mitochondrial precursor 99.9 1.2E-20 4.3E-25 182.6 34.2 337 79-425 37-479 (514)
14 3hym_B Cell division cycle pro 99.9 2.9E-20 9.8E-25 169.2 31.8 290 108-405 17-314 (330)
15 3hym_B Cell division cycle pro 99.9 2.6E-19 8.8E-24 162.8 30.5 295 75-377 18-322 (330)
16 3fp2_A TPR repeat-containing p 99.9 1.8E-18 6.3E-23 168.4 35.8 334 112-456 24-456 (537)
17 1fch_A Peroxisomal targeting s 99.9 1.7E-19 5.7E-24 166.9 25.7 280 114-420 65-355 (368)
18 1fch_A Peroxisomal targeting s 99.8 3.2E-19 1.1E-23 165.0 25.6 256 184-446 66-346 (368)
19 4eqf_A PEX5-related protein; a 99.8 1.3E-19 4.4E-24 167.6 21.8 266 147-420 65-352 (365)
20 4eqf_A PEX5-related protein; a 99.8 1.9E-19 6.6E-24 166.4 20.5 268 110-385 62-352 (365)
21 3cv0_A Peroxisome targeting si 99.8 3.6E-18 1.2E-22 155.0 25.6 277 114-420 22-311 (327)
22 3cv0_A Peroxisome targeting si 99.8 8.3E-18 2.8E-22 152.6 27.4 273 149-452 23-310 (327)
23 2ooe_A Cleavage stimulation fa 99.8 4.4E-15 1.5E-19 144.2 44.9 213 235-457 256-488 (530)
24 3spa_A Mtrpol, DNA-directed RN 99.8 6.1E-20 2.1E-24 180.0 10.1 120 289-408 127-249 (1134)
25 3spa_A Mtrpol, DNA-directed RN 99.8 5.2E-20 1.8E-24 180.5 9.4 151 253-409 126-286 (1134)
26 3mkr_A Coatomer subunit epsilo 99.8 3E-17 1E-21 146.0 26.1 251 156-424 8-264 (291)
27 2xm6_A Protein corresponding t 99.8 1.2E-14 4.2E-19 139.6 46.3 335 92-457 56-432 (490)
28 1b89_A Protein (clathrin heavy 99.8 2.7E-18 9.2E-23 156.2 19.2 314 84-446 9-344 (449)
29 3mkr_A Coatomer subunit epsilo 99.8 1.3E-16 4.3E-21 141.9 25.1 220 151-388 38-263 (291)
30 2xm6_A Protein corresponding t 99.8 2.8E-14 9.7E-19 137.1 41.6 307 92-426 92-434 (490)
31 4g1t_A Interferon-induced prot 99.8 1.1E-14 3.8E-19 139.3 36.2 339 111-456 49-458 (472)
32 2ooe_A Cleavage stimulation fa 99.7 2.9E-14 9.8E-19 138.5 36.3 369 80-456 12-453 (530)
33 4g1t_A Interferon-induced prot 99.7 9.4E-15 3.2E-19 139.8 31.6 339 79-425 49-460 (472)
34 1b89_A Protein (clathrin heavy 99.7 8.7E-17 3E-21 146.4 16.2 277 125-446 15-298 (449)
35 3u4t_A TPR repeat-containing p 99.7 5E-15 1.7E-19 130.6 26.5 246 113-364 3-259 (272)
36 2pl2_A Hypothetical conserved 99.7 3.4E-15 1.2E-19 126.8 22.6 113 303-420 98-210 (217)
37 3uq3_A Heat shock protein STI1 99.7 1.6E-14 5.6E-19 126.0 26.2 223 114-352 6-234 (258)
38 2ho1_A Type 4 fimbrial biogene 99.7 2.4E-14 8.3E-19 124.6 27.0 199 113-317 37-237 (252)
39 3uq3_A Heat shock protein STI1 99.7 1.6E-14 5.3E-19 126.1 25.3 223 148-423 6-235 (258)
40 2h6f_A Protein farnesyltransfe 99.7 1.2E-14 4.1E-19 133.6 25.2 247 112-368 96-361 (382)
41 2vq2_A PILW, putative fimbrial 99.7 1.9E-14 6.4E-19 122.7 24.1 203 216-424 7-211 (225)
42 2pl2_A Hypothetical conserved 99.7 9.7E-15 3.3E-19 124.0 21.6 195 183-386 6-211 (217)
43 2ho1_A Type 4 fimbrial biogene 99.7 2.8E-14 9.7E-19 124.2 24.9 201 217-424 37-238 (252)
44 2q7f_A YRRB protein; TPR, prot 99.7 1.1E-14 3.6E-19 126.0 19.8 201 111-317 21-221 (243)
45 3u4t_A TPR repeat-containing p 99.6 5.7E-14 1.9E-18 123.7 24.3 233 148-389 4-250 (272)
46 2vq2_A PILW, putative fimbrial 99.6 2.1E-13 7.2E-18 116.2 26.9 199 149-352 10-209 (225)
47 2h6f_A Protein farnesyltransfe 99.6 1.3E-13 4.5E-18 126.7 27.2 231 146-386 96-344 (382)
48 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.5E-15 1.9E-19 130.4 17.4 219 161-388 19-243 (275)
49 1xi4_A Clathrin heavy chain; a 99.6 1.6E-12 5.3E-17 132.3 36.1 308 90-446 996-1330(1630)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 7.7E-15 2.6E-19 129.5 17.1 216 93-315 19-241 (275)
51 2q7f_A YRRB protein; TPR, prot 99.6 5E-14 1.7E-18 121.7 20.8 199 90-294 34-232 (243)
52 3sf4_A G-protein-signaling mod 99.6 3.3E-14 1.1E-18 132.9 21.1 301 110-411 6-363 (406)
53 3sf4_A G-protein-signaling mod 99.6 7.6E-14 2.6E-18 130.5 23.2 299 146-446 8-363 (406)
54 1ouv_A Conserved hypothetical 99.6 2E-12 6.7E-17 114.0 30.6 223 146-389 5-251 (273)
55 4a1s_A PINS, partner of inscut 99.6 5.6E-14 1.9E-18 131.8 21.5 273 115-388 50-371 (411)
56 4a1s_A PINS, partner of inscut 99.6 5.3E-14 1.8E-18 132.0 21.2 276 147-424 48-372 (411)
57 1xi4_A Clathrin heavy chain; a 99.6 3E-11 1E-15 123.1 41.7 292 113-444 1105-1415(1630)
58 1ouv_A Conserved hypothetical 99.6 4.1E-12 1.4E-16 112.0 31.3 223 112-354 5-251 (273)
59 3ro2_A PINS homolog, G-protein 99.6 4.6E-14 1.6E-18 128.1 18.5 278 116-424 8-332 (338)
60 3ro2_A PINS homolog, G-protein 99.6 7.1E-14 2.4E-18 126.9 19.2 263 90-388 16-331 (338)
61 2ond_A Cleavage stimulation fa 99.6 1.6E-12 5.3E-17 116.8 27.6 218 96-319 33-271 (308)
62 3vtx_A MAMA; tetratricopeptide 99.6 5E-13 1.7E-17 110.2 21.8 169 111-284 3-171 (184)
63 2ond_A Cleavage stimulation fa 99.6 3.4E-12 1.2E-16 114.6 28.4 219 130-353 33-269 (308)
64 3vtx_A MAMA; tetratricopeptide 99.5 2.1E-12 7.2E-17 106.4 21.8 166 216-388 4-169 (184)
65 4abn_A Tetratricopeptide repea 99.5 4.1E-13 1.4E-17 128.0 19.0 214 198-420 83-317 (474)
66 3e4b_A ALGK; tetratricopeptide 99.5 9.2E-12 3.1E-16 117.9 27.2 304 92-426 48-389 (452)
67 3e4b_A ALGK; tetratricopeptide 99.5 1.7E-12 5.7E-17 123.0 21.6 308 90-426 14-353 (452)
68 4abn_A Tetratricopeptide repea 99.5 2E-12 7E-17 123.2 21.6 214 129-351 84-318 (474)
69 3nf1_A KLC 1, kinesin light ch 99.5 3.2E-13 1.1E-17 121.2 14.9 241 146-423 26-306 (311)
70 3ulq_A Response regulator aspa 99.5 9.3E-12 3.2E-16 115.5 24.8 232 188-423 109-367 (383)
71 3nf1_A KLC 1, kinesin light ch 99.5 2.7E-13 9.3E-18 121.7 13.6 174 108-282 22-223 (311)
72 3ulq_A Response regulator aspa 99.5 1.9E-11 6.4E-16 113.5 25.4 296 90-388 23-367 (383)
73 3as5_A MAMA; tetratricopeptide 99.5 8.9E-12 3E-16 102.4 19.1 162 115-281 10-171 (186)
74 4e6h_A MRNA 3'-END-processing 99.4 3.7E-09 1.3E-13 103.8 40.0 369 80-459 65-568 (679)
75 1hz4_A MALT regulatory protein 99.4 3.1E-10 1E-14 104.8 31.0 204 220-423 96-321 (373)
76 3q15_A PSP28, response regulat 99.4 7.9E-11 2.7E-15 109.0 26.6 309 111-423 8-364 (378)
77 4gyw_A UDP-N-acetylglucosamine 99.4 7.1E-12 2.4E-16 124.3 20.0 168 110-282 6-173 (723)
78 3as5_A MAMA; tetratricopeptide 99.4 5.3E-11 1.8E-15 97.7 19.7 162 185-353 11-172 (186)
79 3q15_A PSP28, response regulat 99.4 3.1E-10 1.1E-14 105.0 25.6 295 90-388 23-364 (378)
80 4i17_A Hypothetical protein; T 99.4 1.3E-10 4.4E-15 99.2 21.2 197 110-319 4-210 (228)
81 4gyw_A UDP-N-acetylglucosamine 99.4 4.6E-11 1.6E-15 118.5 20.6 166 216-388 8-173 (723)
82 1hz4_A MALT regulatory protein 99.4 6.8E-10 2.3E-14 102.4 26.8 271 117-388 18-321 (373)
83 4e6h_A MRNA 3'-END-processing 99.3 7.2E-09 2.5E-13 101.7 34.7 355 95-456 48-532 (679)
84 3edt_B KLC 2, kinesin light ch 99.3 2.9E-11 9.9E-16 106.6 15.5 206 217-423 43-280 (283)
85 4i17_A Hypothetical protein; T 99.3 6.4E-10 2.2E-14 94.8 20.6 209 145-369 5-223 (228)
86 3edt_B KLC 2, kinesin light ch 99.3 6E-11 2E-15 104.6 14.6 118 91-209 13-153 (283)
87 2fo7_A Synthetic consensus TPR 99.2 1E-09 3.4E-14 84.6 17.0 129 115-245 3-131 (136)
88 3qky_A Outer membrane assembly 99.2 1.1E-09 3.9E-14 95.5 19.1 136 110-246 12-177 (261)
89 1qqe_A Vesicular transport pro 99.2 1.2E-09 4.2E-14 97.0 18.8 126 156-282 46-186 (292)
90 2pzi_A Probable serine/threoni 99.2 2.4E-10 8.4E-15 113.8 15.3 171 90-266 402-580 (681)
91 2fo7_A Synthetic consensus TPR 99.2 2.1E-09 7.2E-14 82.8 16.7 129 149-282 3-131 (136)
92 3qou_A Protein YBBN; thioredox 99.2 1.4E-09 4.6E-14 96.3 16.9 173 103-281 107-282 (287)
93 3mv2_B Coatomer subunit epsilo 99.1 4E-08 1.4E-12 85.8 25.4 180 166-354 85-282 (310)
94 3qky_A Outer membrane assembly 99.1 3.6E-09 1.2E-13 92.3 18.7 99 146-246 14-126 (261)
95 2pzi_A Probable serine/threoni 99.1 7.8E-10 2.7E-14 110.2 15.9 170 124-301 402-580 (681)
96 1qqe_A Vesicular transport pro 99.1 4.4E-09 1.5E-13 93.4 18.8 238 164-423 2-268 (292)
97 2uy1_A Cleavage stimulation fa 99.1 4.5E-07 1.5E-11 86.3 33.0 358 80-459 14-415 (493)
98 3urz_A Uncharacterized protein 99.1 5.3E-09 1.8E-13 87.7 17.4 74 188-265 60-133 (208)
99 2yhc_A BAMD, UPF0169 lipoprote 99.1 8.9E-09 3E-13 87.5 18.6 177 113-314 4-209 (225)
100 3dra_A Protein farnesyltransfe 99.1 1.3E-07 4.3E-12 83.5 25.7 219 92-315 46-284 (306)
101 3mv2_B Coatomer subunit epsilo 99.1 2.8E-08 9.5E-13 86.8 21.1 181 98-283 85-282 (310)
102 4ga2_A E3 SUMO-protein ligase 99.1 4.7E-10 1.6E-14 88.7 9.1 136 126-266 10-146 (150)
103 3urz_A Uncharacterized protein 99.1 1E-08 3.5E-13 85.9 17.9 171 115-293 6-194 (208)
104 2vsy_A XCC0866; transferase, g 99.1 4.7E-09 1.6E-13 102.6 17.6 163 92-259 2-167 (568)
105 2r5s_A Uncharacterized protein 99.0 1.5E-09 5.2E-14 88.4 11.6 158 116-279 9-169 (176)
106 3dra_A Protein farnesyltransfe 99.0 2.9E-07 1E-11 81.2 26.8 224 125-353 45-286 (306)
107 3qou_A Protein YBBN; thioredox 99.0 1.2E-08 4E-13 90.3 17.2 22 330-351 224-245 (287)
108 2vsy_A XCC0866; transferase, g 99.0 6.8E-09 2.3E-13 101.5 17.2 154 126-284 2-158 (568)
109 2r5s_A Uncharacterized protein 99.0 6.2E-09 2.1E-13 84.7 14.0 160 150-315 9-170 (176)
110 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.2E-07 4.2E-12 80.4 21.2 59 365-425 152-214 (225)
111 2ifu_A Gamma-SNAP; membrane fu 99.0 1.9E-08 6.5E-13 89.9 16.2 159 192-352 46-222 (307)
112 4ga2_A E3 SUMO-protein ligase 99.0 5.9E-09 2E-13 82.3 11.1 139 92-232 10-149 (150)
113 3rjv_A Putative SEL1 repeat pr 98.9 1.5E-07 5.3E-12 78.9 19.3 160 256-425 20-198 (212)
114 3q7a_A Farnesyltransferase alp 98.9 1.4E-06 4.8E-11 77.7 25.2 174 91-269 66-257 (349)
115 2ifu_A Gamma-SNAP; membrane fu 98.9 1.1E-07 3.9E-12 84.9 18.2 230 159-417 3-254 (307)
116 3u3w_A Transcriptional activat 98.9 2.8E-07 9.7E-12 81.7 20.5 165 222-387 80-264 (293)
117 3q7a_A Farnesyltransferase alp 98.9 5.1E-06 1.7E-10 74.1 28.1 179 122-305 63-258 (349)
118 2qfc_A PLCR protein; TPR, HTH, 98.9 1.1E-06 3.8E-11 77.8 23.9 97 219-315 157-263 (293)
119 3u3w_A Transcriptional activat 98.9 8.4E-07 2.9E-11 78.6 22.8 96 220-315 158-263 (293)
120 3rjv_A Putative SEL1 repeat pr 98.9 4.6E-07 1.6E-11 76.0 20.0 175 97-284 4-198 (212)
121 1a17_A Serine/threonine protei 98.8 2E-07 7E-12 74.5 16.0 128 114-243 14-143 (166)
122 2qfc_A PLCR protein; TPR, HTH, 98.8 8.6E-07 3E-11 78.5 21.4 168 255-422 76-264 (293)
123 1a17_A Serine/threonine protei 98.8 2.3E-07 8E-12 74.1 16.2 129 219-351 15-143 (166)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.5E-07 8.7E-12 77.5 16.9 130 150-284 9-151 (213)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.8 5.5E-07 1.9E-11 75.4 18.4 131 253-390 5-151 (213)
126 1na0_A Designed protein CTPR3; 98.8 3E-07 1E-11 69.3 15.2 97 113-211 9-105 (125)
127 4gco_A Protein STI-1; structur 98.8 2.1E-07 7.3E-12 70.7 14.1 94 150-245 16-109 (126)
128 3gw4_A Uncharacterized protein 98.8 1.8E-07 6.2E-12 77.7 14.9 119 197-315 6-133 (203)
129 4gco_A Protein STI-1; structur 98.8 2.6E-07 8.7E-12 70.3 14.2 111 113-225 13-123 (126)
130 2lni_A Stress-induced-phosphop 98.8 2.2E-07 7.6E-12 71.1 14.0 97 111-209 14-110 (133)
131 1na0_A Designed protein CTPR3; 98.7 3.8E-07 1.3E-11 68.7 14.7 112 147-263 9-120 (125)
132 2vgx_A Chaperone SYCD; alterna 98.7 1.3E-07 4.6E-12 74.2 12.0 99 216-318 20-118 (148)
133 4f3v_A ESX-1 secretion system 98.7 4.5E-08 1.5E-12 84.4 9.8 186 197-389 20-237 (282)
134 2vyi_A SGTA protein; chaperone 98.7 3.7E-07 1.3E-11 69.4 14.0 114 114-229 13-126 (131)
135 2c2l_A CHIP, carboxy terminus 98.7 5.3E-08 1.8E-12 85.7 10.2 95 113-209 4-98 (281)
136 2lni_A Stress-induced-phosphop 98.7 4.7E-07 1.6E-11 69.2 14.5 117 146-267 15-131 (133)
137 2uy1_A Cleavage stimulation fa 98.7 1.6E-05 5.4E-10 75.7 27.8 327 77-423 43-412 (493)
138 1p5q_A FKBP52, FK506-binding p 98.7 2.5E-08 8.5E-13 90.3 7.9 140 128-273 128-283 (336)
139 3gyz_A Chaperone protein IPGC; 98.7 4.5E-07 1.5E-11 71.2 14.0 103 248-353 30-132 (151)
140 2fbn_A 70 kDa peptidylprolyl i 98.7 2.7E-08 9.2E-13 82.6 7.2 150 121-274 12-176 (198)
141 3gyz_A Chaperone protein IPGC; 98.7 1.5E-07 5.2E-12 73.8 11.0 94 185-282 39-132 (151)
142 2e2e_A Formate-dependent nitri 98.7 1.2E-07 4E-12 77.1 10.6 96 183-282 45-143 (177)
143 3gw4_A Uncharacterized protein 98.7 2.1E-07 7.1E-12 77.3 12.3 82 93-174 6-93 (203)
144 2vyi_A SGTA protein; chaperone 98.7 6.8E-07 2.3E-11 67.9 14.3 115 148-267 13-127 (131)
145 2e2e_A Formate-dependent nitri 98.7 2.4E-07 8.3E-12 75.2 12.3 120 125-246 22-144 (177)
146 4f3v_A ESX-1 secretion system 98.7 1.2E-06 4E-11 75.6 16.8 50 125-174 18-74 (282)
147 2c2l_A CHIP, carboxy terminus 98.6 6.9E-07 2.3E-11 78.6 15.2 99 146-246 3-101 (281)
148 2vgx_A Chaperone SYCD; alterna 98.6 3.9E-07 1.3E-11 71.5 11.8 108 102-211 10-117 (148)
149 3dss_A Geranylgeranyl transfer 98.6 2.6E-05 8.9E-10 69.2 24.3 16 373-388 288-303 (331)
150 3dss_A Geranylgeranyl transfer 98.6 5.2E-05 1.8E-09 67.2 26.1 169 94-267 45-240 (331)
151 1p5q_A FKBP52, FK506-binding p 98.6 8.7E-07 3E-11 80.1 14.9 150 94-245 128-293 (336)
152 3sz7_A HSC70 cochaperone (SGT) 98.6 1.7E-06 6E-11 69.0 14.4 105 216-324 10-114 (164)
153 1elw_A TPR1-domain of HOP; HOP 98.6 3.2E-06 1.1E-10 62.7 15.1 96 114-211 5-100 (118)
154 2xcb_A PCRH, regulatory protei 98.6 8.7E-07 3E-11 68.9 12.2 96 218-317 19-114 (142)
155 3upv_A Heat shock protein STI1 98.6 1.4E-06 4.8E-11 66.1 13.1 95 114-210 5-99 (126)
156 2xcb_A PCRH, regulatory protei 98.6 4.4E-07 1.5E-11 70.7 10.2 99 111-211 16-114 (142)
157 3upv_A Heat shock protein STI1 98.5 3.5E-06 1.2E-10 63.8 14.3 96 148-245 5-100 (126)
158 1elw_A TPR1-domain of HOP; HOP 98.5 4.8E-06 1.6E-10 61.8 14.5 94 149-244 6-99 (118)
159 4gcn_A Protein STI-1; structur 98.5 2.6E-06 9E-11 64.7 12.3 107 326-435 9-121 (127)
160 3q49_B STIP1 homology and U bo 98.5 3.4E-06 1.2E-10 64.8 12.8 100 110-211 6-105 (137)
161 2dba_A Smooth muscle cell asso 98.4 1.1E-05 3.7E-10 62.7 15.8 98 146-246 27-128 (148)
162 3sz7_A HSC70 cochaperone (SGT) 98.4 5.8E-06 2E-10 65.9 14.2 99 111-211 9-107 (164)
163 4b4t_Q 26S proteasome regulato 98.4 3.5E-05 1.2E-09 72.2 21.5 169 220-388 58-244 (434)
164 4gcn_A Protein STI-1; structur 98.4 6.1E-06 2.1E-10 62.6 13.1 94 219-315 10-109 (127)
165 2dba_A Smooth muscle cell asso 98.4 8.6E-06 3E-10 63.3 14.3 99 111-211 26-127 (148)
166 2fbn_A 70 kDa peptidylprolyl i 98.4 4.8E-06 1.6E-10 68.8 13.1 132 112-245 37-185 (198)
167 2kck_A TPR repeat; tetratricop 98.4 4.4E-06 1.5E-10 61.3 11.7 15 228-242 17-31 (112)
168 2kck_A TPR repeat; tetratricop 98.4 4E-06 1.4E-10 61.6 11.4 96 184-283 8-106 (112)
169 4b4t_Q 26S proteasome regulato 98.4 2.7E-05 9.3E-10 72.9 19.5 195 120-314 11-241 (434)
170 3q49_B STIP1 homology and U bo 98.4 8E-06 2.7E-10 62.7 13.2 95 217-315 9-103 (137)
171 1elr_A TPR2A-domain of HOP; HO 98.4 4.3E-06 1.5E-10 63.4 11.4 26 218-243 39-64 (131)
172 1elr_A TPR2A-domain of HOP; HO 98.4 4.9E-06 1.7E-10 63.1 11.5 97 114-211 5-107 (131)
173 1wao_1 Serine/threonine protei 98.3 1E-05 3.6E-10 76.7 14.6 119 227-349 16-134 (477)
174 1hxi_A PEX5, peroxisome target 98.3 5.8E-06 2E-10 62.1 10.4 82 197-281 31-112 (121)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 7.4E-07 2.5E-11 84.2 6.4 122 146-273 267-404 (457)
176 1hxi_A PEX5, peroxisome target 98.3 1.1E-05 3.8E-10 60.5 11.4 91 118-210 22-112 (121)
177 1dce_A Protein (RAB geranylger 98.3 5.5E-05 1.9E-09 73.2 19.0 177 91-272 41-244 (567)
178 2xev_A YBGF; tetratricopeptide 98.3 2.6E-05 8.8E-10 59.0 13.3 92 153-246 8-105 (129)
179 2xev_A YBGF; tetratricopeptide 98.2 4.2E-05 1.4E-09 57.8 14.1 101 116-218 5-111 (129)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.8E-05 6.2E-10 74.7 14.3 149 95-245 250-414 (457)
181 3ro3_A PINS homolog, G-protein 98.2 5.5E-05 1.9E-09 59.5 15.0 135 218-352 10-156 (164)
182 1wao_1 Serine/threonine protei 98.2 5.1E-06 1.7E-10 78.9 9.9 118 156-278 15-134 (477)
183 3ro3_A PINS homolog, G-protein 98.2 1.2E-05 4.2E-10 63.4 10.7 24 220-243 92-115 (164)
184 1ihg_A Cyclophilin 40; ppiase 98.2 1.9E-05 6.6E-10 72.1 12.8 90 182-275 273-362 (370)
185 1ihg_A Cyclophilin 40; ppiase 98.2 2.5E-05 8.4E-10 71.4 13.3 139 149-311 225-363 (370)
186 3k9i_A BH0479 protein; putativ 98.1 7.1E-06 2.4E-10 61.2 7.6 61 254-315 27-87 (117)
187 3k9i_A BH0479 protein; putativ 98.1 9.5E-06 3.3E-10 60.5 8.1 84 161-245 4-89 (117)
188 3rkv_A Putative peptidylprolyl 98.1 4.9E-05 1.7E-09 60.3 12.5 28 148-175 12-39 (162)
189 1dce_A Protein (RAB geranylger 98.1 0.00016 5.6E-09 69.9 18.3 174 125-304 41-241 (567)
190 2if4_A ATFKBP42; FKBP-like, al 98.1 1.2E-05 4.1E-10 72.7 9.4 147 147-316 179-326 (338)
191 3rkv_A Putative peptidylprolyl 98.1 2.6E-05 8.9E-10 61.9 10.4 95 113-209 11-123 (162)
192 2if4_A ATFKBP42; FKBP-like, al 98.0 2.4E-05 8.4E-10 70.6 10.2 150 113-284 179-329 (338)
193 2l6j_A TPR repeat-containing p 97.9 1.6E-05 5.5E-10 58.3 5.8 65 112-176 3-67 (111)
194 2hr2_A Hypothetical protein; a 97.9 0.00024 8.3E-09 55.2 12.4 64 219-282 59-130 (159)
195 2kat_A Uncharacterized protein 97.9 0.00012 4.1E-09 54.1 10.5 79 97-175 3-81 (115)
196 2hr2_A Hypothetical protein; a 97.8 0.0004 1.4E-08 53.9 12.6 24 399-422 106-129 (159)
197 3n71_A Histone lysine methyltr 97.8 0.00028 9.6E-09 66.6 13.0 88 228-315 320-419 (490)
198 3n71_A Histone lysine methyltr 97.8 0.00014 4.7E-09 68.7 10.7 119 197-315 323-461 (490)
199 2kat_A Uncharacterized protein 97.8 0.0002 6.7E-09 52.9 9.6 80 130-211 2-81 (115)
200 2l6j_A TPR repeat-containing p 97.8 0.00017 5.7E-09 52.6 9.1 66 216-284 3-68 (111)
201 1klx_A Cysteine rich protein B 97.7 0.0012 4.1E-08 50.6 13.7 85 335-425 35-127 (138)
202 1na3_A Designed protein CTPR2; 97.7 0.00048 1.6E-08 48.0 10.4 80 112-192 8-87 (91)
203 1na3_A Designed protein CTPR2; 97.7 0.0004 1.4E-08 48.4 9.9 61 219-282 11-71 (91)
204 3ma5_A Tetratricopeptide repea 97.7 0.00019 6.6E-09 51.5 8.1 65 215-282 5-69 (100)
205 1klx_A Cysteine rich protein B 97.6 0.0019 6.4E-08 49.4 13.9 73 232-314 10-86 (138)
206 1zu2_A Mitochondrial import re 97.6 0.00017 5.9E-09 55.9 7.0 98 93-192 16-134 (158)
207 1zu2_A Mitochondrial import re 97.6 0.00014 4.8E-09 56.4 6.5 96 197-297 16-132 (158)
208 3ma5_A Tetratricopeptide repea 97.6 0.00045 1.5E-08 49.5 8.9 66 110-175 4-69 (100)
209 3mkq_A Coatomer beta'-subunit; 97.2 0.011 3.6E-07 60.2 17.4 97 124-243 610-707 (814)
210 3ly7_A Transcriptional activat 97.1 0.0072 2.5E-07 53.9 12.7 64 323-388 275-338 (372)
211 3ly7_A Transcriptional activat 97.1 0.024 8.3E-07 50.5 15.6 146 213-366 190-349 (372)
212 3qww_A SET and MYND domain-con 97.0 0.0023 7.8E-08 59.3 8.8 85 197-281 312-409 (433)
213 2kc7_A BFR218_protein; tetratr 97.0 0.0021 7.2E-08 45.6 6.8 49 197-245 14-63 (99)
214 3bee_A Putative YFRE protein; 96.9 0.015 5E-07 40.7 10.4 68 110-177 3-73 (93)
215 3qwp_A SET and MYND domain-con 96.9 0.0044 1.5E-07 57.5 9.8 84 197-280 301-397 (429)
216 3mkq_A Coatomer beta'-subunit; 96.9 0.01 3.4E-07 60.4 13.2 28 324-351 680-707 (814)
217 3qww_A SET and MYND domain-con 96.7 0.0067 2.3E-07 56.2 9.6 26 327-352 384-409 (433)
218 3bee_A Putative YFRE protein; 96.7 0.016 5.4E-07 40.5 9.3 68 214-284 3-73 (93)
219 2kc7_A BFR218_protein; tetratr 96.5 0.017 5.8E-07 40.7 8.9 58 119-176 6-64 (99)
220 3u64_A Protein TP_0956; tetrat 96.5 0.28 9.7E-06 42.0 17.4 84 306-392 180-272 (301)
221 3qwp_A SET and MYND domain-con 96.5 0.014 4.8E-07 54.1 10.1 92 153-245 293-399 (429)
222 1pc2_A Mitochondria fission pr 96.4 0.05 1.7E-06 41.6 10.7 82 341-424 14-100 (152)
223 1wy6_A Hypothetical protein ST 96.3 0.2 7E-06 37.0 13.7 140 228-392 18-157 (172)
224 1pc2_A Mitochondria fission pr 96.3 0.063 2.1E-06 41.1 11.0 66 180-246 30-100 (152)
225 3mkq_B Coatomer subunit alpha; 96.2 0.23 7.8E-06 39.0 14.0 23 149-171 36-58 (177)
226 3u64_A Protein TP_0956; tetrat 96.1 0.087 3E-06 45.1 12.1 94 341-436 179-283 (301)
227 2v5f_A Prolyl 4-hydroxylase su 96.0 0.1 3.5E-06 37.2 10.6 62 292-353 8-74 (104)
228 2v5f_A Prolyl 4-hydroxylase su 96.0 0.082 2.8E-06 37.7 10.0 66 111-176 3-75 (104)
229 4gns_B Protein CSD3, chitin bi 95.6 2 6.8E-05 42.6 25.0 89 356-446 609-710 (754)
230 3mkq_B Coatomer subunit alpha; 95.5 0.66 2.2E-05 36.4 16.3 127 89-243 15-141 (177)
231 1nzn_A CGI-135 protein, fissio 95.4 0.25 8.4E-06 36.3 10.6 85 338-424 14-103 (126)
232 4h7y_A Dual specificity protei 95.3 0.24 8.1E-06 37.5 10.1 110 324-439 12-137 (161)
233 4ady_A RPN2, 26S proteasome re 95.0 3.6 0.00012 41.7 22.9 259 153-423 380-657 (963)
234 1wy6_A Hypothetical protein ST 95.0 0.77 2.6E-05 34.0 14.7 62 292-355 94-155 (172)
235 4h7y_A Dual specificity protei 94.5 0.6 2.1E-05 35.3 10.5 51 303-355 74-124 (161)
236 3lvg_A Clathrin heavy chain 1; 94.4 1.6E-05 5.3E-10 72.3 -16.9 295 111-444 52-364 (624)
237 4b4t_P 26S proteasome regulato 94.2 3.4 0.00012 38.3 19.5 50 161-211 30-84 (445)
238 2ff4_A Probable regulatory pro 94.1 0.27 9.1E-06 44.8 9.7 68 151-220 175-248 (388)
239 4b4t_P 26S proteasome regulato 93.9 4.1 0.00014 37.8 21.9 100 220-319 140-248 (445)
240 1nzn_A CGI-135 protein, fissio 93.7 0.56 1.9E-05 34.4 8.9 26 221-246 78-103 (126)
241 4fhn_B Nucleoporin NUP120; pro 93.5 3.4 0.00012 43.7 18.1 190 260-458 818-1050(1139)
242 4fhn_B Nucleoporin NUP120; pro 93.5 3.1 0.0001 44.0 17.7 58 257-314 902-963 (1139)
243 1v54_E Cytochrome C oxidase po 93.2 0.61 2.1E-05 32.4 7.7 62 162-224 25-86 (109)
244 2ff4_A Probable regulatory pro 93.1 0.48 1.7E-05 43.1 9.8 71 328-399 174-249 (388)
245 4gns_B Protein CSD3, chitin bi 91.9 1.2 4.2E-05 44.0 11.2 129 115-244 250-398 (754)
246 3txn_A 26S proteasome regulato 91.1 8.5 0.00029 34.8 19.9 293 113-426 19-345 (394)
247 2y69_E Cytochrome C oxidase su 91.0 1.3 4.4E-05 32.6 7.7 62 162-224 68-129 (152)
248 3ffl_A Anaphase-promoting comp 89.6 2.2 7.5E-05 32.9 8.4 113 188-314 26-147 (167)
249 4ady_A RPN2, 26S proteasome re 88.8 22 0.00076 36.2 27.3 312 123-446 384-722 (963)
250 1v54_E Cytochrome C oxidase po 88.8 4.5 0.00015 28.1 9.3 47 341-387 26-72 (109)
251 2p58_C Putative type III secre 88.6 4.5 0.00016 28.0 8.5 28 157-188 50-77 (116)
252 2y69_E Cytochrome C oxidase su 87.1 7.4 0.00025 28.7 9.3 46 378-423 71-116 (152)
253 2p58_C Putative type III secre 86.3 6.1 0.00021 27.3 7.9 86 268-363 21-106 (116)
254 1zbp_A Hypothetical protein VP 86.1 8.7 0.0003 32.4 10.6 117 121-246 5-129 (273)
255 2nsz_A Programmed cell death p 85.8 8.3 0.00028 28.4 9.5 64 328-392 10-75 (129)
256 1zbp_A Hypothetical protein VP 85.7 15 0.00052 30.9 12.3 116 225-354 5-129 (273)
257 3lvg_A Clathrin heavy chain 1; 85.6 0.011 3.7E-07 54.2 -7.4 234 81-345 83-324 (624)
258 2uwj_G Type III export protein 85.2 4.3 0.00015 28.0 6.8 13 157-169 49-61 (115)
259 2uwj_G Type III export protein 84.5 5.9 0.0002 27.4 7.2 86 268-363 20-105 (115)
260 4b4t_R RPN7, 26S proteasome re 83.2 13 0.00045 34.1 11.8 94 187-282 136-236 (429)
261 2wpv_A GET4, UPF0363 protein Y 82.9 23 0.00078 30.8 22.6 166 116-316 36-215 (312)
262 3txn_A 26S proteasome regulato 82.9 27 0.00092 31.5 21.5 98 148-245 20-127 (394)
263 2ion_A PDCD4, programmed cell 82.2 6.3 0.00022 30.1 7.7 65 327-392 11-77 (152)
264 4b4t_R RPN7, 26S proteasome re 82.1 30 0.001 31.7 14.4 61 219-280 133-194 (429)
265 4a1g_A Mitotic checkpoint seri 81.7 14 0.00047 28.1 9.3 49 132-180 84-134 (152)
266 3esl_A Checkpoint serine/threo 81.7 9.8 0.00034 30.4 8.8 58 230-288 92-149 (202)
267 1y8m_A FIS1; mitochondria, unk 81.7 14 0.00049 27.6 10.7 23 366-388 83-105 (144)
268 3eiq_C Programmed cell death p 81.6 23 0.0008 31.4 12.2 232 219-462 56-326 (358)
269 3esl_A Checkpoint serine/threo 81.4 15 0.0005 29.5 9.7 73 108-180 72-148 (202)
270 3ffl_A Anaphase-promoting comp 81.1 8.2 0.00028 29.8 7.8 26 291-316 65-90 (167)
271 2zu6_B Programmed cell death p 79.6 30 0.001 30.0 12.2 99 363-462 169-275 (307)
272 3o48_A Mitochondria fission 1 78.9 17 0.00059 26.8 8.6 68 357-424 37-107 (134)
273 3o48_A Mitochondria fission 1 77.7 19 0.00064 26.6 9.3 13 197-209 92-104 (134)
274 4a1g_A Mitotic checkpoint seri 75.9 24 0.00081 26.8 9.0 51 379-429 84-135 (152)
275 1wdy_A 2-5A-dependent ribonucl 74.5 13 0.00043 31.4 8.5 82 373-459 192-277 (285)
276 1y8m_A FIS1; mitochondria, unk 74.4 25 0.00084 26.3 13.4 71 357-429 36-109 (144)
277 3lpz_A GET4 (YOR164C homolog); 74.4 44 0.0015 29.3 22.1 110 116-240 38-159 (336)
278 3lpz_A GET4 (YOR164C homolog); 70.9 54 0.0018 28.7 20.3 170 148-353 36-215 (336)
279 1qsa_A Protein (soluble lytic 70.8 79 0.0027 30.6 28.0 275 94-388 54-347 (618)
280 3t8k_A Uncharacterized protein 64.6 47 0.0016 26.0 9.2 115 332-446 42-167 (186)
281 3hra_A Ankyrin repeat family p 62.8 11 0.00036 29.9 5.1 15 123-137 12-26 (201)
282 2wpv_A GET4, UPF0363 protein Y 61.1 82 0.0028 27.3 20.5 189 128-352 12-215 (312)
283 3eiq_C Programmed cell death p 60.3 92 0.0031 27.6 14.5 23 292-314 220-242 (358)
284 2nsz_A Programmed cell death p 59.4 42 0.0015 24.5 7.3 61 117-177 11-73 (129)
285 4aez_C MAD3, mitotic spindle c 59.1 39 0.0013 27.5 7.5 52 378-429 132-184 (223)
286 3jxi_A Vanilloid receptor-rela 57.9 6 0.0002 33.2 2.9 23 436-460 228-250 (260)
287 2b7e_A PRE-mRNA processing pro 55.9 7 0.00024 24.0 2.0 35 412-446 3-38 (59)
288 1wdy_A 2-5A-dependent ribonucl 55.2 43 0.0015 27.9 8.0 121 296-429 152-280 (285)
289 3bu8_A Telomeric repeat-bindin 54.6 60 0.0021 26.1 7.6 48 129-176 88-143 (235)
290 1qsa_A Protein (soluble lytic 51.5 1.8E+02 0.006 28.2 32.2 273 64-353 54-347 (618)
291 4g8k_A 2-5A-dependent ribonucl 51.5 66 0.0023 27.9 8.8 100 345-458 219-324 (337)
292 2ion_A PDCD4, programmed cell 50.9 38 0.0013 25.7 6.0 62 116-177 12-75 (152)
293 2keb_A DNA polymerase subunit 50.6 46 0.0016 22.8 5.5 58 378-437 27-89 (101)
294 3d5l_A Regulatory protein RECX 49.5 1E+02 0.0035 25.0 8.8 149 281-446 40-195 (221)
295 2fu4_A Ferric uptake regulatio 49.1 53 0.0018 21.4 6.5 61 385-446 7-68 (83)
296 2wvi_A Mitotic checkpoint seri 49.1 88 0.003 24.0 10.6 72 108-182 58-131 (164)
297 1bpo_A Protein (clathrin); cla 48.6 1.7E+02 0.0057 27.0 11.0 125 80-208 330-454 (494)
298 4b4t_S RPN3, 26S proteasome re 48.3 1.4E+02 0.0049 28.0 10.4 65 289-354 231-299 (523)
299 1k1a_A B-cell lymphoma 3-encod 47.7 37 0.0013 27.6 6.2 86 223-314 12-101 (241)
300 3hra_A Ankyrin repeat family p 47.5 29 0.001 27.2 5.4 13 228-240 13-25 (201)
301 2d2s_A Exocyst complex compone 47.3 1.2E+02 0.004 25.0 9.4 31 215-245 89-119 (235)
302 3utm_A Tankyrase-1; tankyrase, 46.8 96 0.0033 26.7 9.2 52 152-208 26-80 (351)
303 3bu8_A Telomeric repeat-bindin 46.2 1.1E+02 0.0037 24.7 7.8 23 223-245 120-142 (235)
304 4ets_A Ferric uptake regulatio 45.5 81 0.0028 24.1 7.3 69 234-304 14-84 (162)
305 2rg8_A Programmed cell death p 45.0 51 0.0017 25.4 6.0 26 327-352 12-37 (165)
306 4aez_C MAD3, mitotic spindle c 45.0 1.2E+02 0.0043 24.6 9.2 53 234-287 131-183 (223)
307 2xig_A Ferric uptake regulatio 44.1 99 0.0034 23.2 7.7 59 137-195 16-74 (150)
308 2f6m_A Suppressor protein STP2 43.1 37 0.0013 21.3 3.9 46 115-160 4-49 (65)
309 3ltm_A Alpha-REP4; protein eng 42.6 1.2E+02 0.0042 23.8 19.5 16 180-195 93-108 (211)
310 1k1a_A B-cell lymphoma 3-encod 42.2 1.1E+02 0.0037 24.6 8.3 21 157-177 16-36 (241)
311 2fe3_A Peroxide operon regulat 42.1 90 0.0031 23.2 6.9 60 386-446 13-72 (145)
312 1mzb_A Ferric uptake regulatio 42.1 94 0.0032 22.8 7.0 34 411-444 34-67 (136)
313 2fe3_A Peroxide operon regulat 41.2 1E+02 0.0035 22.9 7.2 57 139-195 13-69 (145)
314 3pvs_A Replication-associated 41.1 2.1E+02 0.0073 26.2 12.2 136 304-455 166-318 (447)
315 2ijq_A Hypothetical protein; s 41.0 1.2E+02 0.0041 23.2 7.7 60 363-423 36-103 (161)
316 3eu9_A Huntingtin-interacting 40.8 20 0.00069 29.1 3.5 199 237-461 22-236 (240)
317 2rfa_A Transient receptor pote 40.4 1.2E+02 0.0041 24.2 8.2 76 382-460 136-222 (232)
318 2xig_A Ferric uptake regulatio 39.9 1.2E+02 0.004 22.8 7.3 60 386-446 18-77 (150)
319 3eu9_A Huntingtin-interacting 39.8 33 0.0011 27.7 4.7 14 406-419 218-231 (240)
320 3l6a_A Eukaryotic translation 39.4 81 0.0028 28.1 7.2 108 327-438 14-130 (364)
321 3ygs_P Procaspase 9; apoptosis 39.2 84 0.0029 21.5 5.8 65 134-204 25-89 (97)
322 4gq2_M Nucleoporin NUP120; bet 38.6 2.3E+02 0.008 29.1 11.4 109 188-303 816-950 (950)
323 3bqo_A Telomeric repeat-bindin 38.0 76 0.0026 25.2 5.8 23 223-245 123-145 (211)
324 2wvi_A Mitotic checkpoint seri 36.7 1.4E+02 0.0049 22.9 11.4 54 235-289 78-131 (164)
325 1bd8_A P19INK4D CDK4/6 inhibit 36.7 22 0.00074 26.6 2.8 49 403-456 106-154 (156)
326 1ug3_A EIF4GI, eukaryotic prot 36.2 1.9E+02 0.0065 25.3 9.1 24 117-140 15-38 (339)
327 1bpo_A Protein (clathrin); cla 36.1 2.6E+02 0.009 25.8 9.8 136 66-210 345-483 (494)
328 3kea_A K1L; tropism, ANK repea 35.8 61 0.0021 27.4 5.8 10 157-166 38-47 (285)
329 1mzb_A Ferric uptake regulatio 35.2 1.1E+02 0.0037 22.5 6.3 57 139-195 9-66 (136)
330 4b4t_S RPN3, 26S proteasome re 35.1 2.9E+02 0.0099 25.9 10.8 69 147-216 231-303 (523)
331 2w57_A Ferric uptake regulatio 35.0 1.1E+02 0.0037 23.0 6.4 34 411-444 33-66 (150)
332 3c1d_A Protein ORAA, regulator 34.6 1.5E+02 0.0051 22.5 10.7 102 340-446 45-146 (159)
333 2d2s_A Exocyst complex compone 34.4 1.9E+02 0.0066 23.7 10.5 27 288-314 90-116 (235)
334 2dod_A Transcription elongatio 34.3 54 0.0019 21.7 3.9 37 232-270 15-51 (82)
335 4gq2_M Nucleoporin NUP120; bet 34.3 2.5E+02 0.0085 28.9 10.8 108 331-444 816-950 (950)
336 3ltm_A Alpha-REP4; protein eng 33.6 1.7E+02 0.0059 22.9 19.9 17 288-304 125-141 (211)
337 4g8k_A 2-5A-dependent ribonucl 32.9 2.3E+02 0.008 24.2 11.4 14 90-103 33-46 (337)
338 2w57_A Ferric uptake regulatio 32.8 1.2E+02 0.0041 22.7 6.3 58 138-195 7-65 (150)
339 2jul_A Calsenilin; EF-hand, ca 32.8 2.1E+02 0.007 23.5 11.0 27 254-280 229-255 (256)
340 2f6m_A Suppressor protein STP2 32.6 81 0.0028 19.8 4.2 46 149-195 4-49 (65)
341 1n11_A Ankyrin; clathrin, BAND 31.9 98 0.0034 28.0 6.9 327 90-458 22-367 (437)
342 3eyy_A Putative iron uptake re 31.9 1E+02 0.0034 23.0 5.7 56 139-195 10-65 (145)
343 3twr_A Tankyrase-2; ankyrin re 31.8 75 0.0026 23.8 5.3 117 295-429 11-135 (165)
344 1n11_A Ankyrin; clathrin, BAND 31.5 94 0.0032 28.1 6.7 341 67-446 28-390 (437)
345 2r9g_A AAA ATPase, central reg 31.4 2E+02 0.0068 22.9 9.5 45 258-303 15-62 (204)
346 3ltj_A Alpharep-4; protein eng 31.2 1.8E+02 0.0063 22.5 18.8 16 180-195 88-103 (201)
347 3bge_A Predicted ATPase; struc 30.2 2.1E+02 0.0071 22.8 8.4 40 259-298 9-51 (201)
348 3kea_A K1L; tropism, ANK repea 30.2 72 0.0025 26.9 5.3 203 229-457 8-217 (285)
349 3eyy_A Putative iron uptake re 29.9 1.6E+02 0.0054 21.9 6.6 34 270-303 33-66 (145)
350 1ug3_A EIF4GI, eukaryotic prot 29.6 33 0.0011 30.2 3.0 65 327-392 13-78 (339)
351 2qq8_A TBC1 domain family memb 29.5 94 0.0032 27.2 6.0 44 347-390 215-258 (334)
352 2p1h_A APAF-1, apoptotic prote 29.2 1.3E+02 0.0045 20.2 7.2 61 132-200 24-84 (94)
353 3ygs_P Procaspase 9; apoptosis 29.0 1.4E+02 0.0047 20.4 6.8 34 375-412 52-85 (97)
354 4ets_A Ferric uptake regulatio 28.5 1.5E+02 0.0051 22.6 6.3 66 130-195 14-82 (162)
355 2etb_A Transient receptor pote 27.9 46 0.0016 27.4 3.6 23 436-460 224-246 (256)
356 3jxi_A Vanilloid receptor-rela 27.7 62 0.0021 26.7 4.4 53 334-386 11-72 (260)
357 3mwm_A ZUR, putative metal upt 26.8 81 0.0028 23.3 4.3 34 411-444 29-62 (139)
358 1uzc_A Hypothetical protein FL 26.6 45 0.0015 21.4 2.4 36 410-446 13-49 (71)
359 3b7b_A Euchromatic histone-lys 26.2 60 0.0021 26.2 4.0 21 368-388 215-235 (237)
360 2bwb_A Ubiquitin-like protein 25.8 99 0.0034 17.7 4.8 34 68-102 10-43 (46)
361 3mwm_A ZUR, putative metal upt 25.8 96 0.0033 22.9 4.6 46 150-195 16-61 (139)
362 2o03_A Probable zinc uptake re 25.1 88 0.003 22.8 4.3 37 408-444 23-59 (131)
363 2fu4_A Ferric uptake regulatio 25.0 1.4E+02 0.0049 19.2 6.1 33 163-195 33-65 (83)
364 2ijq_A Hypothetical protein; s 24.6 2.4E+02 0.008 21.6 7.6 50 159-209 44-101 (161)
365 1wty_A Hypothetical protein TT 24.4 1.9E+02 0.0066 20.5 6.4 65 163-234 4-70 (119)
366 2etb_A Transient receptor pote 24.2 1.2E+02 0.0042 24.7 5.6 53 335-387 9-70 (256)
367 3f3f_C Nucleoporin NUP85; stru 23.7 2.9E+02 0.0099 26.2 8.1 73 197-273 495-568 (570)
368 3ctd_A Putative ATPase, AAA fa 23.5 2.9E+02 0.0099 22.2 9.1 46 256-301 34-82 (213)
369 3lxu_X Tripeptidyl-peptidase 2 22.8 7.3E+02 0.025 26.6 13.5 155 128-288 1122-1350(1354)
370 3aji_A 26S proteasome non-ATPa 22.6 1.6E+02 0.0054 23.4 5.9 12 197-208 17-28 (231)
371 2yru_A Steroid receptor RNA ac 21.5 1.7E+02 0.0058 21.0 4.9 18 298-315 70-87 (118)
372 2o03_A Probable zinc uptake re 21.1 1.8E+02 0.0061 21.0 5.3 44 152-195 15-58 (131)
373 2zu6_B Programmed cell death p 20.8 2E+02 0.0069 24.8 6.2 69 150-219 169-239 (307)
374 4e2i_2 DNA polymerase alpha su 20.3 1.9E+02 0.0065 18.9 4.9 32 379-410 5-36 (78)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-33 Score=275.98 Aligned_cols=369 Identities=11% Similarity=0.030 Sum_probs=244.8
Q ss_pred CCCCHHHHHHHHH--hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-----------
Q 012442 77 IIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG----------- 143 (463)
Q Consensus 77 ~~~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----------- 143 (463)
..|+...+..+.. ...|+++.|+.+|+.+.. .+++..+++.++.+|.+.|++++|.++|+++....
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 191 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL-YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLM 191 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG-GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------C
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccc
Confidence 4466666665555 457899999999987753 47888899999999999999999999998533222
Q ss_pred -----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----------------------------------------
Q 012442 144 -----VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV---------------------------------------- 178 (463)
Q Consensus 144 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------------------------------------- 178 (463)
..+..+|+.++.+|.+.|++++|+++|++|.+.+.
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 192 QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 12477899999999999999999999988875431
Q ss_pred ------------------------------CcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 012442 179 ------------------------------EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228 (463)
Q Consensus 179 ------------------------------~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (463)
+++..+|+.++..|.+. |++++|+++|+++.+..+.+..+++.++.+|.
T Consensus 272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR-SRFIDVLAITTKILEIDPYNLDVYPLHLASLH 350 (597)
T ss_dssp HHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHH
Confidence 13444555555555555 55555555555555433345555555555555
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 012442 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308 (463)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 308 (463)
+.|++++|.++|+++.+. .|++..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|
T Consensus 351 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 426 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQA 426 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555443 44456666677777777777777777777766543 23456677777777777777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 309 VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
.++|+++... .+.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+
T Consensus 427 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 427 ISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777764332 12355667777777777777777777777776654 45666777777777777777777777777765
Q ss_pred c----CCCCC--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch--hhhHHHHHH
Q 012442 389 N----GILPL--EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLE 455 (463)
Q Consensus 389 ~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--a~~~~~~~~ 455 (463)
. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++ |.+.+++++
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4 44565 5577777777777777777777777776654 23566777777777777776 444444333
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.8e-33 Score=273.48 Aligned_cols=367 Identities=10% Similarity=-0.071 Sum_probs=310.9
Q ss_pred CCHHHHHHHHH--hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 012442 79 PTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDS 156 (463)
Q Consensus 79 ~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 156 (463)
++...++.++. ...|++++|+.+|+.+.. ..|+..++..++.+|.+.|++++|..+|+.+... ..+..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD-ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh-hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 45667777777 557999999999998873 4568899999999999999999999999988543 4578899999999
Q ss_pred HHhcCChHHHHHHHHHHH-hC--------------CCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCC--------
Q 012442 157 YCGAGKYDEAVMSFDVMS-MH--------------GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV-------- 213 (463)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~-~~--------------g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-------- 213 (463)
|.+.|++++|+++|+++. .. |.+.+..+|+.++.+|.+. |++++|+++|+++.+..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL-SNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCchhhHHHH
Confidence 999999999999999533 21 2344689999999999999 99999999998875411
Q ss_pred ---------------------------------------------------------------CCCHHHHHHHHHHHHhc
Q 012442 214 ---------------------------------------------------------------DPDGDSFAILLEGWEKE 230 (463)
Q Consensus 214 ---------------------------------------------------------------~~~~~~~~~l~~~~~~~ 230 (463)
+++..+|+.++.+|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 26777888888888888
Q ss_pred CCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 012442 231 GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQ 310 (463)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 310 (463)
|++++|.++|+++.+. .|++..+|+.++.++.+.|++++|.++++++.+.. +.+..++..++.+|.+.|++++|.+
T Consensus 319 g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 319 SRFIDVLAITTKILEI---DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp TCHHHHHHHHHHHHHH---CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999888765 45567788888899999999999999998887654 5578899999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 012442 311 LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390 (463)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 390 (463)
+|+++.... +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 395 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 395 YFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999965532 3467899999999999999999999999999886 6788999999999999999999999999999864
Q ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCccC--HHHHHHHHHHHHHhcch--hhhHHHHHHH
Q 012442 391 ILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR----RILIY--EVTMHKLKKAFYNESRS--MRDIFDSLER 456 (463)
Q Consensus 391 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~--~~~~~~ll~~~~~~g~~--a~~~~~~~~~ 456 (463)
+.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|+. |.+.++++++
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 347889999999999999999999999999876 66777 78999999999999999 5555554443
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2e-33 Score=267.55 Aligned_cols=207 Identities=12% Similarity=0.093 Sum_probs=155.0
Q ss_pred HHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---------Hh
Q 012442 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND---------ST 306 (463)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~---------~~ 306 (463)
+..+.+++.++ +..+.....++.+|++|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k-~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKK-AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHh-cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34445555553 444323345677777777777777777777777777777777777777777776554 57
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 012442 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386 (463)
Q Consensus 307 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 386 (463)
.|.++|++ |...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|
T Consensus 88 ~A~~lf~~-M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 88 RGFDIFKQ-MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHH-HHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78888888 67778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhc
Q 012442 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444 (463)
Q Consensus 387 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 444 (463)
.+.|+.||..+|++||.+|++.|++++|.+++++|++.|+.|+..||+.++..|...+
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 8888888888888888888888888888888888888888888888888888877654
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.6e-32 Score=257.55 Aligned_cols=203 Identities=13% Similarity=0.162 Sum_probs=140.5
Q ss_pred HHHHHHHhhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCC---------H
Q 012442 202 ALEFLNRVKK-IVDPD-GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ---------V 270 (463)
Q Consensus 202 a~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~---------~ 270 (463)
+..+.+++++ +.... ..+++.+|++|++.|++++|.++|++|.+. |+.| |..+||+||.+|++.+. +
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQL-SQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3344444443 33322 234566666677777777777777777664 6666 56667777776665543 5
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350 (463)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (463)
++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++ |...|+.||..+|++||.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~-M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQ-MKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 67777777777777777777777777777777777777777777 56677777777777777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 012442 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRN 407 (463)
Q Consensus 351 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 407 (463)
|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|..
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777777777777777777777765
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.8e-27 Score=221.09 Aligned_cols=343 Identities=12% Similarity=0.071 Sum_probs=257.5
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...++.+.|..+++.+.+..+.+..+|..+...+.+.|++++|...|+++.+..+.+..+|..+..++.+.|++++|.+.
T Consensus 44 ~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 123 (388)
T 1w3b_A 44 FQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45678888888888777766778888888888888888888888888888877776777788888888888888888888
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 012442 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249 (463)
Q Consensus 170 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 249 (463)
|+++.+.. +.+...+..+...+... |++++|.+.|+++.+..+.+..+|..+...+.+.|++++|.+.|+++.+.
T Consensus 124 ~~~al~~~-p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 198 (388)
T 1w3b_A 124 YVSALQYN-PDLYCVRSDLGNLLKAL-GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--- 198 (388)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 88887653 22344555566666666 88888888888877755666778888888888888888888888888764
Q ss_pred CCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHH
Q 012442 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329 (463)
Q Consensus 250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 329 (463)
.|++...|..+...+...|++++|...|++..+.. +.+..++..+...|.+.|++++|...|+.++... +.+..+|.
T Consensus 199 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 275 (388)
T 1w3b_A 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYC 275 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHH
Confidence 66667778888888888888888888888877654 3356777888888888888888888888855432 22456777
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCC
Q 012442 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409 (463)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 409 (463)
.+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+..+|.+.|
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 88888888888888888888887764 6677788888888888888888888888887642 334667778888888888
Q ss_pred CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHh
Q 012442 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE 443 (463)
Q Consensus 410 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 443 (463)
++++|.+.|+++.+.. +-+...|..+-..+.+.
T Consensus 354 ~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 354 KLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEM 386 (388)
T ss_dssp CCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHc
Confidence 8888888888887643 12344455554444433
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=7.2e-27 Score=218.34 Aligned_cols=355 Identities=11% Similarity=0.035 Sum_probs=314.9
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...|++++|++.|+.+.+..+.+...+..+...+...|++++|...++...+..+.+..+|..+...+.+.|++++|++.
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 35699999999999887777888889999999999999999999999999998888999999999999999999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 012442 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249 (463)
Q Consensus 170 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 249 (463)
|+++.+.. +.+..+|..+..++.+. |++++|.+.|+++.+..+.+...+..+...+...|++++|.+.|+++.+.
T Consensus 90 ~~~al~~~-p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 164 (388)
T 1w3b_A 90 YRHALRLK-PDFIDGYINLAAALVAA-GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--- 164 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHH-SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH---
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 99998763 44566899999999999 99999999999988765667788899999999999999999999999876
Q ss_pred CCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHH
Q 012442 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329 (463)
Q Consensus 250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 329 (463)
.|++..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++.+... +.+..++.
T Consensus 165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 241 (388)
T 1w3b_A 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHG 241 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHH
Confidence 77778899999999999999999999999999875 4457789999999999999999999999965543 23578899
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCC
Q 012442 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG 409 (463)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 409 (463)
.+...|.+.|++++|.+.|+++.+.+ +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+..+|..+...+.+.|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC
Confidence 99999999999999999999999986 6678899999999999999999999999999864 457789999999999999
Q ss_pred CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch--hhhHHHHHH
Q 012442 410 RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLE 455 (463)
Q Consensus 410 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--a~~~~~~~~ 455 (463)
++++|.+.++++.+.. +.+..++..+...+.+.|+. |.+.+++++
T Consensus 320 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp CHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999998753 34578899999999999999 444444443
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.4e-23 Score=198.41 Aligned_cols=323 Identities=11% Similarity=0.014 Sum_probs=246.3
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC
Q 012442 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181 (463)
Q Consensus 102 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 181 (463)
|..+....+.+...|..++..+.+.|++++|+.+|+.+.+..+.+..+|..+..++...|++++|++.|+++.+.+ +.+
T Consensus 15 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 93 (450)
T 2y4t_A 15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDF 93 (450)
T ss_dssp --------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred ccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCc
Confidence 3333334566777888888888888888888888888888777778888888888888888888888888888764 455
Q ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCH---HHHHHHH------------HHHHhcCCHHHHHHHHHHHHHh
Q 012442 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDG---DSFAILL------------EGWEKEGNVEEANKTFGEMVER 246 (463)
Q Consensus 182 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~g~~~~a~~~~~~~~~~ 246 (463)
..++..+...|.+. |++++|...|+++.+..+.+. ..+..++ ..+.+.|++++|.+.|+++.+.
T Consensus 94 ~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 172 (450)
T 2y4t_A 94 TAARLQRGHLLLKQ-GKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172 (450)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77788888888888 888888888888877555555 6665553 4488889999999999888765
Q ss_pred cCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHH
Q 012442 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326 (463)
Q Consensus 247 ~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 326 (463)
.|.+..++..+...|.+.|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+.+.... +.+..
T Consensus 173 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~ 246 (450)
T 2y4t_A 173 ---CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKR 246 (450)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred ---CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHH
Confidence 56677788888888999999999999998887754 4467888888888899999999999998865432 22334
Q ss_pred HHHHH------------HHHHHHcCCHhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 012442 327 TYNMI------------FECLIKNKRVHEVEKFFHEMIKNEWQPT-----PLNCATAITMLLDADEPEIAIEIWNYILEN 389 (463)
Q Consensus 327 ~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 389 (463)
.+..+ ...+...|++++|..+|+++.+.. |+ ...+..+..++.+.|++++|...++++.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44444 677888899999999999988753 43 346788888899999999999999988875
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccC-HHHHHHHH
Q 012442 390 GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY-EVTMHKLK 437 (463)
Q Consensus 390 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll 437 (463)
. +.+...|..+..+|...|++++|.+.++++.+.. |+ ...+..+-
T Consensus 325 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 370 (450)
T 2y4t_A 325 E-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN--ENDQQIREGLE 370 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cchHHHHHHHH
Confidence 3 3356788888889999999999999999888643 44 34444443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.5e-23 Score=199.71 Aligned_cols=347 Identities=14% Similarity=0.090 Sum_probs=284.6
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...|+++.|+.+|+.+....+.+..+|..+..++...|++++|+..|+.+.+.++.+..++..+..+|.+.|++++|.+.
T Consensus 37 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 37 LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45799999999999988777888999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHhCCCCcCH----HHHHHHH------------HHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 012442 170 FDVMSMHGVEQDV----VAVNSLL------------SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233 (463)
Q Consensus 170 ~~~m~~~g~~~~~----~~~~~ll------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 233 (463)
|+++.+.. |+. ..+..+. ..+... |++++|+.+|+++.+..+.+..++..+..+|.+.|++
T Consensus 117 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 193 (450)
T 2y4t_A 117 FKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGS-GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP 193 (450)
T ss_dssp HHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCH
Confidence 99999763 443 5555553 347888 9999999999999887778899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHH------------HHHHHH
Q 012442 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA------------LDILVK 301 (463)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------l~~~~~ 301 (463)
++|.++|+++.+. .|.+..+|..+...|...|++++|+..|+++.+.. +.+...+..+ ...|.+
T Consensus 194 ~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (450)
T 2y4t_A 194 RKAISDLKAASKL---KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIR 269 (450)
T ss_dssp GGGHHHHHHHHHH---HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999875 56678899999999999999999999999998764 3344455444 788999
Q ss_pred cCCHhHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHH
Q 012442 302 LNDSTHAVQLWDIMMVFHGAFPD--SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIA 379 (463)
Q Consensus 302 ~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 379 (463)
.|++++|...|+.++....-.+. ...|..+...+.+.|++++|...++++.+.. +.+..+|..+..+|...|++++|
T Consensus 270 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A 348 (450)
T 2y4t_A 270 DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEA 348 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999997664322222 4578889999999999999999999998875 66789999999999999999999
Q ss_pred HHHHHHHHHcCCCCC-hhhHHHHHH------------HHHcCC-----CHHHHHHHHHHH-HHCC--CccC-------HH
Q 012442 380 IEIWNYILENGILPL-EASANELLV------------GLRNLG-----RLSDVRRFAEEM-LNRR--ILIY-------EV 431 (463)
Q Consensus 380 ~~~~~~~~~~~~~p~-~~~~~~li~------------~~~~~g-----~~~~a~~~~~~m-~~~~--~~~~-------~~ 431 (463)
...++++.+. .|+ ...+..+.. .|...| +.+++.+.++++ .+.. ..++ ..
T Consensus 349 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~ 426 (450)
T 2y4t_A 349 IQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEK 426 (450)
T ss_dssp HHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHH
T ss_pred HHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHH
Confidence 9999999984 443 455555552 233444 567778888763 3221 1122 23
Q ss_pred HHHHHHHHHHHhcch
Q 012442 432 TMHKLKKAFYNESRS 446 (463)
Q Consensus 432 ~~~~ll~~~~~~g~~ 446 (463)
.|..+..+|...|+.
T Consensus 427 ~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 427 KFIDIAAAKEVLSDP 441 (450)
T ss_dssp HHHHHHHHHHHSSGG
T ss_pred HHHHHHHHHHHhCCH
Confidence 666777777777665
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.5e-22 Score=196.25 Aligned_cols=355 Identities=11% Similarity=0.070 Sum_probs=281.6
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...|+++.|+..|+.+.... ||..+|..+..++.+.|++++|+..|+.+.+.++.+..+|..+..++.+.|++++|...
T Consensus 17 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 17 FRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp HHTSCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcC-ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45789999999999887633 58899999999999999999999999999888888888999999999999999999999
Q ss_pred HHHHHhCCCCcC--------------------------------------------------------------------
Q 012442 170 FDVMSMHGVEQD-------------------------------------------------------------------- 181 (463)
Q Consensus 170 ~~~m~~~g~~~~-------------------------------------------------------------------- 181 (463)
|+++.+.+ +++
T Consensus 96 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 96 LSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 99887654 111
Q ss_pred -----------HHHHHHHHHHHHc---cCCcHHHHHHHHHHhhc-----C--C-------CCCHHHHHHHHHHHHhcCCH
Q 012442 182 -----------VVAVNSLLSAICR---QENQTSRALEFLNRVKK-----I--V-------DPDGDSFAILLEGWEKEGNV 233 (463)
Q Consensus 182 -----------~~~~~~ll~~~~~---~~~~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~l~~~~~~~g~~ 233 (463)
...+......+.. . |++++|+.+|+++.+ . . +.+..++..+...+...|++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSP-ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCT-THHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence 2222222232332 6 899999999988765 1 1 33466788888999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 012442 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313 (463)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 313 (463)
++|.+.|+++.+. .|. ..++..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++
T Consensus 254 ~~A~~~~~~~l~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 254 LGAHEDIKKAIEL---FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp HHHHHHHHHHHHH---CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhh---Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999998775 564 7788889999999999999999999988765 4466788888999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-
Q 012442 314 IMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL- 392 (463)
Q Consensus 314 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~- 392 (463)
.+.... +.+...+..+...+...|++++|..+++++.+.. +.+..++..+...|...|++++|...++++.+....
T Consensus 329 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 329 KAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 865532 2355678888888899999999999999988764 556788888999999999999999999988864211
Q ss_pred CC----hhhHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch--hhhHHHHHHH
Q 012442 393 PL----EASANELLVGLRN---LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLER 456 (463)
Q Consensus 393 p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--a~~~~~~~~~ 456 (463)
++ ...|..+...+.. .|++++|.+.++++.+.. +.+..++..+...+.+.|+. |.+.+++.++
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 11 2378888888999 999999999999988764 34567788888999999988 5555555544
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=8.9e-21 Score=174.61 Aligned_cols=318 Identities=11% Similarity=0.015 Sum_probs=251.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012442 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191 (463)
Q Consensus 112 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 191 (463)
|+..+..+...+...|++++|+..|+++.+..+.+..++..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456677788888888888888888888888877778888888888888888888888888887653 3466778888888
Q ss_pred HHccCCcHHHHHHHHHHhhcCCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhh
Q 012442 192 ICRQENQTSRALEFLNRVKKIVD---PDGDSFAIL------------LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256 (463)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 256 (463)
+... |++++|...|+++.+..+ .+...+..+ ...+...|++++|.++++++.+. .|.+...
T Consensus 81 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 156 (359)
T 3ieg_A 81 LLKQ-GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV---CVWDAEL 156 (359)
T ss_dssp HHHH-TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred HHHc-CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCchHH
Confidence 8888 888888888888877544 455555555 57888999999999999998775 6667788
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHH-------
Q 012442 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN------- 329 (463)
Q Consensus 257 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------- 329 (463)
+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...++.+.....- +...+.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD--HKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--chHHHHHHHHHHH
Confidence 9999999999999999999999998874 556788889999999999999999999987654432 223222
Q ss_pred -----HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 012442 330 -----MIFECLIKNKRVHEVEKFFHEMIKNEWQPTP----LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANE 400 (463)
Q Consensus 330 -----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 400 (463)
.+...+.+.|++++|...++++.+.. +.+. ..+..+..++...|++++|...++++.+.. +.+...|..
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 311 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 23566888999999999999998864 3333 235567788999999999999999999863 336778889
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCccC-HHHHHHHHHHHH
Q 012442 401 LLVGLRNLGRLSDVRRFAEEMLNRRILIY-EVTMHKLKKAFY 441 (463)
Q Consensus 401 li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~ 441 (463)
+...|...|++++|.+.|++..+.. |+ ...+..+..+..
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEHN--ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHH
Confidence 9999999999999999999998764 44 444554444433
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=3.4e-20 Score=180.68 Aligned_cols=358 Identities=12% Similarity=0.089 Sum_probs=282.8
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...|+++.|+..|+.+....+.+..+|..+..+|.+.|++++|++.|+++.+.++.+..++..+..++...|++++|++.
T Consensus 36 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp HHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45799999999999988877889999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHhCCC------------------------------------CcCHH------------------------------
Q 012442 170 FDVMSMHGV------------------------------------EQDVV------------------------------ 183 (463)
Q Consensus 170 ~~~m~~~g~------------------------------------~~~~~------------------------------ 183 (463)
|+.+....- .|+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (537)
T 3fp2_A 116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL 195 (537)
T ss_dssp HHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHH
Confidence 964421100 01111
Q ss_pred HHHHHHHHHHcc-------CCcHHHHHHHHHHhhcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 012442 184 AVNSLLSAICRQ-------ENQTSRALEFLNRVKKIVDPDGD-------SFAILLEGWEKEGNVEEANKTFGEMVERFEW 249 (463)
Q Consensus 184 ~~~~ll~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 249 (463)
....+...+... .|++++|..+|+++.+..+.+.. ++..+...+...|++++|.+.|++..+.
T Consensus 196 ~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--- 272 (537)
T 3fp2_A 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--- 272 (537)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---
Confidence 111122121111 13788899999998875555543 4667778888999999999999999875
Q ss_pred CCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHH
Q 012442 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329 (463)
Q Consensus 250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 329 (463)
.|+ ..+|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+..... .+...|.
T Consensus 273 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~ 348 (537)
T 3fp2_A 273 HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP--ENVYPYI 348 (537)
T ss_dssp CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCSHHHH
T ss_pred CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHH
Confidence 674 7789999999999999999999999998865 44678899999999999999999999999766442 3457788
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-----CChhhHHHHHHH
Q 012442 330 MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGIL-----PLEASANELLVG 404 (463)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~li~~ 404 (463)
.+...+...|++++|..+|+++.+.. +.+...+..+...|...|++++|.+.|+++.+.... .....+..+...
T Consensus 349 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 349 QLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 89999999999999999999999875 667788999999999999999999999998864211 111223444566
Q ss_pred HHcC----------CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch--hhhHHHHHHH
Q 012442 405 LRNL----------GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLER 456 (463)
Q Consensus 405 ~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--a~~~~~~~~~ 456 (463)
+... |++++|...+++..+.. +.+...+..+...+.+.|+. |.+.+++.++
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777 99999999999998764 34667889999999999998 6666665554
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=2.4e-20 Score=171.74 Aligned_cols=307 Identities=14% Similarity=0.092 Sum_probs=257.9
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...|+++.|+..|+.+....+.+..+|..+...+...|++++|...|+.+.+..+.+...+..+...+...|++++|.+.
T Consensus 14 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 93 (359)
T 3ieg_A 14 LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDD 93 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHH
Confidence 45799999999999988877788999999999999999999999999999998888889999999999999999999999
Q ss_pred HHHHHhCCCC---cCHHHHHHH------------HHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 012442 170 FDVMSMHGVE---QDVVAVNSL------------LSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE 234 (463)
Q Consensus 170 ~~~m~~~g~~---~~~~~~~~l------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 234 (463)
|+++.+.. + .+...+..+ ...+... |++++|..+++.+.+..+.+...+..+...+...|+++
T Consensus 94 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (359)
T 3ieg_A 94 FKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDG-ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR 171 (359)
T ss_dssp HHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHH
Confidence 99999763 2 244444444 4677788 99999999999998877788999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHH------------HHHHHHHHc
Q 012442 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS------------NALDILVKL 302 (463)
Q Consensus 235 ~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~------------~ll~~~~~~ 302 (463)
+|.+.+++..+. .|.+..++..+...+...|++++|...|++..+.. +.+...+. .+...+.+.
T Consensus 172 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (359)
T 3ieg_A 172 KAISDLKAASKL---KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRD 247 (359)
T ss_dssp HHHHHHHHHHTT---CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999764 67788899999999999999999999999998764 23344333 236678999
Q ss_pred CCHhHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHH
Q 012442 303 NDSTHAVQLWDIMMVFHGAFPDS--LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380 (463)
Q Consensus 303 g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 380 (463)
|++++|...++.+.....-.+.. ..+..+...+...|++++|...+++..+.. +.+..++..+...|...|++++|.
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~ 326 (359)
T 3ieg_A 248 GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAI 326 (359)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999976654322211 235567788999999999999999999875 668899999999999999999999
Q ss_pred HHHHHHHHcCCCCC-hhhHHHHHHHH
Q 012442 381 EIWNYILENGILPL-EASANELLVGL 405 (463)
Q Consensus 381 ~~~~~~~~~~~~p~-~~~~~~li~~~ 405 (463)
+.|+++.+.. |+ ...+..+..+.
T Consensus 327 ~~~~~a~~~~--p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 327 QDYEAAQEHN--ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHTTC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCChHHHHHHHHHH
Confidence 9999999853 43 44555555444
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.2e-20 Score=182.65 Aligned_cols=337 Identities=12% Similarity=-0.015 Sum_probs=280.4
Q ss_pred CCHHHHHHHHH--hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC----------
Q 012442 79 PTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---------- 146 (463)
Q Consensus 79 ~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---------- 146 (463)
|++..+..+-. ...|+++.|+..|+.+.+..+.+..+|..+..++.+.|++++|...|+.+...++.+
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 116 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLER 116 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence 57666665544 457999999999999888678889999999999999999999999999987766422
Q ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Q 012442 147 ---------------------------------------------------------------------LPTFASIFDSY 157 (463)
Q Consensus 147 ---------------------------------------------------------------------~~~~~~li~~~ 157 (463)
...+......+
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (514)
T 2gw1_A 117 NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSN 196 (514)
T ss_dssp HHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 22333333334
Q ss_pred Hh---cCChHHHHHHHHHHHh-----CCC--------CcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHH
Q 012442 158 CG---AGKYDEAVMSFDVMSM-----HGV--------EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221 (463)
Q Consensus 158 ~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 221 (463)
.. .|++++|..+|+++.+ ..- +.+..++..+...+... |++++|..+|+++.+..+. ..++.
T Consensus 197 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~~~-~~~~~ 274 (514)
T 2gw1_A 197 LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK-NDPLGAHEDIKKAIELFPR-VNSYI 274 (514)
T ss_dssp HSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHCCC-HHHHH
T ss_pred HHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCcc-HHHHH
Confidence 43 8999999999999987 311 22356777888889999 9999999999998773333 88999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 012442 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301 (463)
Q Consensus 222 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 301 (463)
.+...+...|++++|.+.++++.+. .|.+..++..+...+...|++++|...|++..+.. +.+...+..+...|..
T Consensus 275 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 275 YMALIMADRNDSTEYYNYFDKALKL---DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHTSSCCTTGGGHHHHHHTT---CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhc---CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHH
Confidence 9999999999999999999999764 66677899999999999999999999999998875 3467788999999999
Q ss_pred cCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHhC---
Q 012442 302 LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT------PLNCATAITMLLD--- 372 (463)
Q Consensus 302 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~--- 372 (463)
.|++++|...++.+.... +.+...+..+...+...|++++|...|+++.+.. +.+ ...+..+...|..
T Consensus 351 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTRNPT 427 (514)
T ss_dssp TTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred cCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999976543 2355788899999999999999999999998753 112 3488999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 012442 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRR 425 (463)
Q Consensus 373 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 425 (463)
.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++..+.+
T Consensus 428 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 428 VENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp TTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 999999999999999864 3356788899999999999999999999998865
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=2.9e-20 Score=169.18 Aligned_cols=290 Identities=9% Similarity=-0.049 Sum_probs=205.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 012442 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187 (463)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 187 (463)
..+.+...+..+...+...|++++|.++|+++.+..+.+...+..++..+...|++++|..+++++.+.. +.+...|..
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 4456666777888888888888888888888888877777777778888888888888888888887653 345667777
Q ss_pred HHHHHHccCC-cHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHc
Q 012442 188 LLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266 (463)
Q Consensus 188 ll~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~ 266 (463)
+...+... | ++++|...|++..+..+.+...|..+...+...|++++|.+.|++..+. .|.+...+..+...+..
T Consensus 96 l~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 96 VGCYYLMV-GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL---MKGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHS-CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHh-hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHH
Confidence 77777777 7 8888888888877755667778888888888888888888888888765 45455567777888888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHHcC
Q 012442 267 GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA-------FPDSLTYNMIFECLIKNK 339 (463)
Q Consensus 267 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~~li~~~~~~~ 339 (463)
.|++++|...+++..+.. +.+...+..+...+...|++++|...++.++....- +.....+..+...|...|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 888888888888887764 445667777777777788888887777775443211 223456666666666777
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 012442 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGL 405 (463)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 405 (463)
++++|...|++..+.. +.+...+..+..+|...|++++|.+.++++.+.. +.+...+..+..++
T Consensus 251 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 251 KYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 7777777777666654 4455666666666666666666666666665532 22344555555555
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.6e-19 Score=162.85 Aligned_cols=295 Identities=8% Similarity=-0.004 Sum_probs=248.8
Q ss_pred CCCCCCHHHHHHHHHhccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHH
Q 012442 75 TGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIF 154 (463)
Q Consensus 75 ~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li 154 (463)
.+..++............|+++.|+++|+.+....+.+...+..++..+...|++++|..+++++.+..+.+...|..+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 33344444333334456799999999999988777777888888999999999999999999999998888888999999
Q ss_pred HHHHhcC-ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 012442 155 DSYCGAG-KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233 (463)
Q Consensus 155 ~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 233 (463)
..+...| ++++|.+.|++..+.. +.+...|..+...+... |++++|+..++++.+..+.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVE-SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 9999999 9999999999999764 44577888999999999 9999999999998886666778888899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC--------CCCCHHHHHHHHHHHHHcCCH
Q 012442 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN--------CFPTLKFFSNALDILVKLNDS 305 (463)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~~~~~~ll~~~~~~g~~ 305 (463)
++|.+.|++..+. .|++..++..+...+...|++++|...+++..+.. .+....++..+...|...|++
T Consensus 176 ~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQALSI---APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999754 67788899999999999999999999999987632 133457899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hCCCCHH
Q 012442 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITML-LDADEPE 377 (463)
Q Consensus 306 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 377 (463)
++|...++.+.... +.+...+..+...|.+.|++++|.+.|+++.+.. +.+...+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999999976643 2356788899999999999999999999998875 56788888888888 4556543
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=1.8e-18 Score=168.43 Aligned_cols=334 Identities=9% Similarity=-0.040 Sum_probs=262.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012442 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191 (463)
Q Consensus 112 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 191 (463)
....|..+...+.+.|++++|+..|+++....+.+..+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+...
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 345788899999999999999999999999998899999999999999999999999999998765 5568888999999
Q ss_pred HHccCCcHHHHHHHHHHhhcCCC-------------------------------------CCHH----------------
Q 012442 192 ICRQENQTSRALEFLNRVKKIVD-------------------------------------PDGD---------------- 218 (463)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~~~~-------------------------------------~~~~---------------- 218 (463)
+... |++++|+..|+.+..... |+..
T Consensus 103 ~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESL-GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHH-TCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 9999 999999999965432110 1110
Q ss_pred --------------HHHHHHHHHH--------hcCCHHHHHHHHHHHHHhcCCCCchHh-------hHHHHHHHHHccCC
Q 012442 219 --------------SFAILLEGWE--------KEGNVEEANKTFGEMVERFEWNPEHVL-------AYETFLITLIRGKQ 269 (463)
Q Consensus 219 --------------~~~~l~~~~~--------~~g~~~~a~~~~~~~~~~~~~~p~~~~-------~~~~li~~~~~~~~ 269 (463)
....+...+. ..|++++|.++|+++.+. .|++.. ++..+...+...|+
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA---NTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---CCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 1112222211 124788999999998754 565433 46677788889999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 012442 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349 (463)
Q Consensus 270 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 349 (463)
+++|...|++..+.. |+...+..+...+...|++++|...++.+.... +.+..+|..+...+...|++++|...|+
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999998865 668889999999999999999999999976543 3467789999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC---
Q 012442 350 EMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI--- 426 (463)
Q Consensus 350 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--- 426 (463)
++.+.. +.+...+..+...|...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++++.+...
T Consensus 335 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 335 KAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 999875 5567889999999999999999999999999864 34567888999999999999999999999876431
Q ss_pred --ccCHHHHHHHHHHHHHh----------cch--hhhHHHHHHH
Q 012442 427 --LIYEVTMHKLKKAFYNE----------SRS--MRDIFDSLER 456 (463)
Q Consensus 427 --~~~~~~~~~ll~~~~~~----------g~~--a~~~~~~~~~ 456 (463)
......+......+.+. |+. |...+++.++
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 11222234445566666 777 5555555443
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=1.7e-19 Score=166.91 Aligned_cols=280 Identities=10% Similarity=-0.041 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012442 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193 (463)
Q Consensus 114 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 193 (463)
..+..+...+.+.|++++|...|+++.+..+.+..++..+..++.+.|++++|++.|+++.+.. +.+..++..+...+.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4455555555555566666665555555555555555555555555555555555555555443 334445555555555
Q ss_pred ccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHH
Q 012442 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273 (463)
Q Consensus 194 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a 273 (463)
.. |++++|...++++....+.+...+..+... . . ...+ ...+.. +..+...|++++|
T Consensus 144 ~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~----------~--~~~~--~~~~~~-~~~~~~~~~~~~A 200 (368)
T 1fch_A 144 NE-SLQRQACEILRDWLRYTPAYAHLVTPAEEG-------A----------G--GAGL--GPSKRI-LGSLLSDSLFLEV 200 (368)
T ss_dssp HT-TCHHHHHHHHHHHHHTSTTTGGGCC------------------------------------CT-THHHHHHHHHHHH
T ss_pred Hc-CCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------h----------h--hhcc--cHHHHH-HHHHhhcccHHHH
Confidence 55 555555555555444222222222111000 0 0 0000 000001 2222255666666
Q ss_pred HHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 012442 274 LKFLRVMKGENCFP-TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352 (463)
Q Consensus 274 ~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (463)
...|+++.+..... +..++..+...|.+.|++++|...++.++... +.+...|..+...+...|++++|...|+++.
T Consensus 201 ~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 278 (368)
T 1fch_A 201 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRAL 278 (368)
T ss_dssp HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666665543111 35566666666666666666666666644432 2245566666666666666666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC----------ChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 012442 353 KNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP----------LEASANELLVGLRNLGRLSDVRRFAEE 420 (463)
Q Consensus 353 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----------~~~~~~~li~~~~~~g~~~~a~~~~~~ 420 (463)
+.. +.+...+..+..+|.+.|++++|...|+++.+..... ...+|..+..+|...|++++|..++++
T Consensus 279 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 279 ELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 653 4456666666666767777777777766666532110 145667777777777777777766553
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=3.2e-19 Score=165.01 Aligned_cols=256 Identities=13% Similarity=0.008 Sum_probs=183.0
Q ss_pred HHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHH
Q 012442 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263 (463)
Q Consensus 184 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~ 263 (463)
.+..+...+... |++++|...|+++.+..+.+..++..+..++...|++++|.+.|+++.+. .|++..++..+...
T Consensus 66 ~~~~~~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~ 141 (368)
T 1fch_A 66 QPFEEGLRRLQE-GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL---KPDNQTALMALAVS 141 (368)
T ss_dssp SHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHH
Confidence 344455555555 55555555555555544445555555566666666666666666655543 34455555556666
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCHHHHH---------------HHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHH
Q 012442 264 LIRGKQVDEALKFLRVMKGENCFPTLKFFS---------------NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTY 328 (463)
Q Consensus 264 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 328 (463)
+...|++++|.+.|+++.+... .+...+. ..+..+...|++++|...++.+.......++..++
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 6666666666666665555431 1111111 12333448999999999999976655443468899
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcC
Q 012442 329 NMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL 408 (463)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 408 (463)
..+...|...|++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...+..+..+|.+.
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 999999999999999999999999875 6678899999999999999999999999999864 34577899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCcc----------CHHHHHHHHHHHHHhcch
Q 012442 409 GRLSDVRRFAEEMLNRRILI----------YEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 409 g~~~~a~~~~~~m~~~~~~~----------~~~~~~~ll~~~~~~g~~ 446 (463)
|++++|...|+++.+..... ...+|..+..++...|+.
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 99999999999988643111 268899999999999998
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=1.3e-19 Score=167.60 Aligned_cols=266 Identities=9% Similarity=0.013 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 012442 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226 (463)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 226 (463)
...+..+...+.+.|++++|++.|+++.+.. +.+..+|..+...+... |++++|+..|+++.+..+.+..+|..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAEN-ENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4446677777777777777777777776653 44566777777777777 777777777777766555667777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCchHhhHH----------HHHHHHHccCCHHHHHHHHHHHhhCCCC-CCHHHHHHH
Q 012442 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYE----------TFLITLIRGKQVDEALKFLRVMKGENCF-PTLKFFSNA 295 (463)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----------~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l 295 (463)
|...|++++|.+.|+++.+. .|++...+. .+...+...|++++|...|+++.+.... .+..++..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 88888888888888777654 443333333 3366777777788888888777765411 146677777
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCC
Q 012442 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375 (463)
Q Consensus 296 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 375 (463)
...|...|++++|...|++++... +.+..+|+.+...|...|++++|...|+++.+.. +.+..++..+..+|...|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 777777788888877777755432 2356677777777777778888887777777764 4557777777777777777
Q ss_pred HHHHHHHHHHHHHcCCC-----------CChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 012442 376 PEIAIEIWNYILENGIL-----------PLEASANELLVGLRNLGRLSDVRRFAEE 420 (463)
Q Consensus 376 ~~~a~~~~~~~~~~~~~-----------p~~~~~~~li~~~~~~g~~~~a~~~~~~ 420 (463)
+++|...|+++.+.... .+...|..+..++...|+.+.+.++.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 77777777777653211 0245677777777777777776665543
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=1.9e-19 Score=166.40 Aligned_cols=268 Identities=9% Similarity=-0.088 Sum_probs=219.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012442 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189 (463)
Q Consensus 110 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 189 (463)
..+...|..+...+.+.|++++|...|+.+....+.+..+|..+...+.+.|++++|++.|+++.+.. +.+..+|..+.
T Consensus 62 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 34556699999999999999999999999999888889999999999999999999999999998764 45688899999
Q ss_pred HHHHccCCcHHHHHHHHHHhhcCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc--hHhhH
Q 012442 190 SAICRQENQTSRALEFLNRVKKIVDPD----------GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE--HVLAY 257 (463)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~ 257 (463)
..|... |++++|+..|+++.+..+.+ ...+..+...+...|++++|.++|+++.+. .|. +..++
T Consensus 141 ~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 216 (365)
T 4eqf_A 141 VSYTNT-SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ---NGDMIDPDLQ 216 (365)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH---SCSSCCHHHH
T ss_pred HHHHcc-ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---CcCccCHHHH
Confidence 999999 99999999999986622222 233445688999999999999999999876 565 67789
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 012442 258 ETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK 337 (463)
Q Consensus 258 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (463)
..+...+...|++++|.+.|++..+.. +.+..++..+..+|.+.|++++|...|++++... +.+..++..+...|.+
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHH
Confidence 999999999999999999999998864 4568899999999999999999999999976643 3357889999999999
Q ss_pred cCCHhHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 012442 338 NKRVHEVEKFFHEMIKNEW-----------QPTPLNCATAITMLLDADEPEIAIEIWNY 385 (463)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 385 (463)
.|++++|...|+++.+..- ..+...|..+..++...|+.+.+.++.++
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999887420 11367889999999999999988887654
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=3.6e-18 Score=155.02 Aligned_cols=277 Identities=9% Similarity=-0.058 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012442 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193 (463)
Q Consensus 114 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 193 (463)
..|..+...+...|++++|..+|+++.+..+.+..++..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3455566666666777777777776666665566666666666666666666666666666542 334555555555565
Q ss_pred ccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHH-HH-HHHccCCHH
Q 012442 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETF-LI-TLIRGKQVD 271 (463)
Q Consensus 194 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~l-i~-~~~~~~~~~ 271 (463)
.. |++++|.+.++++....+.+...+..+...+ | +......+ .. .+...|+++
T Consensus 101 ~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 101 NE-HNANAALASLRAWLLSQPQYEQLGSVNLQAD-----------------------V-DIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HT-TCHHHHHHHHHHHHHTSTTTTTC--------------------------------------------CCTTSHHHHH
T ss_pred Hc-CCHHHHHHHHHHHHHhCCccHHHHHHHhHHH-----------------------H-HHHHHHHHHHhHHHHHcccHH
Confidence 55 6666666666665443222222222220000 0 00000000 11 244445555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 272 EALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351 (463)
Q Consensus 272 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 351 (463)
+|.+.++++.+.. +.+...+..+...|...|++++|...++.+.... +.+...+..+...+...|++++|...|+++
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555554432 2234455555555555555555555555533321 223445555555556666666666666665
Q ss_pred HHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 012442 352 IKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP-----------LEASANELLVGLRNLGRLSDVRRFAEE 420 (463)
Q Consensus 352 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~ 420 (463)
.+.. +.+..++..+..+|...|++++|.+.++++.+..... +...|..+..++.+.|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5543 3445556666666666666666666666655432111 244566666666666666666666554
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=8.3e-18 Score=152.64 Aligned_cols=273 Identities=11% Similarity=0.027 Sum_probs=186.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 012442 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228 (463)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (463)
.+..+...+...|++++|..+|+++.+.. +.+...+..+...+... |++++|...++++.+..+.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 34555566666666666666666665543 33455555555556655 66666666666655544445555666666666
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHH-HH-HHHHcCCHh
Q 012442 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA-LD-ILVKLNDST 306 (463)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~-~~~~~g~~~ 306 (463)
..|++++|.+.++++.+. .|.+...+..+...+ |+......+ .. .+...|+++
T Consensus 101 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLS---QPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HTTCHHHHHHHHHHHHHT---STTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh---CCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 666666666666665543 332222222221100 111111122 22 377889999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 012442 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386 (463)
Q Consensus 307 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 386 (463)
+|...++.+.... +.+...+..+...|...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++
T Consensus 156 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 156 ECRTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999965543 3467889999999999999999999999999875 667889999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCcc-----------CHHHHHHHHHHHHHhcch--hhhHHH
Q 012442 387 LENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI-----------YEVTMHKLKKAFYNESRS--MRDIFD 452 (463)
Q Consensus 387 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-----------~~~~~~~ll~~~~~~g~~--a~~~~~ 452 (463)
.+.. +.+...|..+...|.+.|++++|.+.++++.+..... +...+..+..++.+.|+. |...+.
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8864 3467789999999999999999999999988754221 467899999999999998 444443
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=4.4e-15 Score=144.24 Aligned_cols=213 Identities=10% Similarity=0.028 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHhcCCCCchHhhHHHHHHHHHc-------cCCHH-------HHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 012442 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIR-------GKQVD-------EALKFLRVMKGENCFPTLKFFSNALDILV 300 (463)
Q Consensus 235 ~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 300 (463)
++..+|++.... .|.+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.
T Consensus 256 ~a~~~y~~al~~---~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 256 RVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 666778877765 56677788888888875 68887 89999999987323446888999999999
Q ss_pred HcCCHhHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhCCCCHH
Q 012442 301 KLNDSTHAVQLWDIMMVFHGAFPD--SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM-LLDADEPE 377 (463)
Q Consensus 301 ~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~ 377 (463)
+.|++++|..+|+.++. +.|+ ...|..++..+.+.|++++|.++|++..+.. +.+...|...... +...|+.+
T Consensus 333 ~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp HTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHH
T ss_pred hcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChh
Confidence 99999999999999765 3443 2578888988889999999999999999864 3334444333322 33589999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-cc--CHHHHHHHHHHHHHhcchhhhHHHHH
Q 012442 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI-LI--YEVTMHKLKKAFYNESRSMRDIFDSL 454 (463)
Q Consensus 378 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~--~~~~~~~ll~~~~~~g~~a~~~~~~~ 454 (463)
+|.++|++..+.. +-+...|..++..+.+.|+.++|..+|++....+. .| ....|...+....+.|+. +.+..+
T Consensus 409 ~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~--~~~~~~ 485 (530)
T 2ooe_A 409 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL--ASILKV 485 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH--HHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHH
Confidence 9999999998753 33578999999999999999999999999988642 22 244788888888888988 444444
Q ss_pred HHH
Q 012442 455 ERR 457 (463)
Q Consensus 455 ~~~ 457 (463)
.++
T Consensus 486 ~~r 488 (530)
T 2ooe_A 486 EKR 488 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 24
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=6.1e-20 Score=180.00 Aligned_cols=120 Identities=11% Similarity=0.029 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHH--HhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 012442 289 LKFFSNALDILVKLNDSTHAVQLWDIMM--VFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATA 366 (463)
Q Consensus 289 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (463)
..||+++|++||+.|++++|.++|+.|. ...|+.||+.|||+||.+||+.|++++|.++|++|.+.|+.||..||++|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4678888888888888888888887742 23467788888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHcC
Q 012442 367 ITMLLDADEP-EIAIEIWNYILENGILPLEASANELLVGLRNL 408 (463)
Q Consensus 367 i~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 408 (463)
|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 8888887764 67778888888888888888888777655433
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=5.2e-20 Score=180.47 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=124.7
Q ss_pred hHhhHHHHHHHHHccCCHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHH
Q 012442 253 HVLAYETFLITLIRGKQVDEALKFLRVMKG---ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN 329 (463)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 329 (463)
-..+||++|++|++.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++ |...|+.||.+|||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~e-M~~~G~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM-VKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHH-HHHcCCCCcHHHHH
Confidence 456899999999999999999999988764 57999999999999999999999999999999 78999999999999
Q ss_pred HHHHHHHHcCC-HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC------hhhHHHHH
Q 012442 330 MIFECLIKNKR-VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPL------EASANELL 402 (463)
Q Consensus 330 ~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~li 402 (463)
+||.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+. ..++..+++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999998 478999999999999999999999998765543 333444443 3345544 33444455
Q ss_pred HHHHcCC
Q 012442 403 VGLRNLG 409 (463)
Q Consensus 403 ~~~~~~g 409 (463)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666554
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=3e-17 Score=145.98 Aligned_cols=251 Identities=14% Similarity=0.112 Sum_probs=145.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCH--HHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 012442 156 SYCGAGKYDEAVMSFDVMSMHGVEQDV--VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV 233 (463)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 233 (463)
-....|+++.|+..++..... .|+. .....+.++|... |+++.|+..++. ..+|+..++..+...+...|+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~-g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQ-RKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHT-TCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHC-CCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence 344456666666665554332 2332 2334455566666 666666654432 2344555666666666666666
Q ss_pred HHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 012442 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWD 313 (463)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 313 (463)
++|.+.++++... +..|++...+..+...+...|++++|++.+++ +.+...+..+...|.+.|++++|.+.|+
T Consensus 82 ~~A~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 82 DAIVAELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666666666553 44565555666666666666666666666665 3455566666666666666666666666
Q ss_pred HHHHhcCCCCCHHH---HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 012442 314 IMMVFHGAFPDSLT---YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390 (463)
Q Consensus 314 ~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 390 (463)
.+.... |+... ...++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++.+..
T Consensus 155 ~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 155 KMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 644432 33211 1122233333466777777777766653 5566666667777777777777777777766643
Q ss_pred CCCChhhHHHHHHHHHcCCCHHH-HHHHHHHHHHC
Q 012442 391 ILPLEASANELLVGLRNLGRLSD-VRRFAEEMLNR 424 (463)
Q Consensus 391 ~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~ 424 (463)
+-+..++..++..+...|+.++ +.++++++.+.
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 2245566666666666666654 45666666654
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=1.2e-14 Score=139.61 Aligned_cols=335 Identities=12% Similarity=0.030 Sum_probs=236.8
Q ss_pred cCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCh
Q 012442 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGK----NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG----AGKY 163 (463)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~ 163 (463)
.++.+.|...|+.+.+. -+...+..|...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence 56778888888776542 466777888888887 788888888888877765 55666777777777 7788
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc----cCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 012442 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICR----QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK----EGNVEE 235 (463)
Q Consensus 164 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 235 (463)
++|++.|++..+.| +...+..|...|.. . +++++|.++|++..+. .+...+..+...|.. .+++++
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVT-RDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHH
Confidence 88888888887754 45566666666665 5 7888888888876552 366777777777777 788888
Q ss_pred HHHHHHHHHHhcCCCCchHhhHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHhH
Q 012442 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK----LNDSTH 307 (463)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~ 307 (463)
|.++|++..+. + +..++..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++
T Consensus 206 A~~~~~~a~~~-~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 206 SAQWYRKSATS-G----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 88888877663 2 34466777777765 678888888888877765 45566666666766 778888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCC---CHHHH
Q 012442 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKN-----KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD---EPEIA 379 (463)
Q Consensus 308 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a 379 (463)
|...|+.... . -+...+..|...|... +++++|...|++..+.| +...+..+...|...| +.++|
T Consensus 278 A~~~~~~a~~-~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A 350 (490)
T 2xm6_A 278 ALEWYRKSAE-Q---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKA 350 (490)
T ss_dssp HHHHHHHHHT-T---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHH-c---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHH
Confidence 8888887433 2 2455666677777766 78888888888887765 4556666766666555 67788
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHH----hcch--hhh
Q 012442 380 IEIWNYILENGILPLEASANELLVGLRN----LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN----ESRS--MRD 449 (463)
Q Consensus 380 ~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~--a~~ 449 (463)
.+.|++..+.| +...+..|...|.. .+++++|.++|++..+.| +...+..|-..|.+ .++. |..
T Consensus 351 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 351 VEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88888877754 45677777777777 678888888888877765 45566666666665 4555 555
Q ss_pred HHHHHHHH
Q 012442 450 IFDSLERR 457 (463)
Q Consensus 450 ~~~~~~~~ 457 (463)
.+++.++.
T Consensus 425 ~~~~A~~~ 432 (490)
T 2xm6_A 425 WFDTASTN 432 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHC
Confidence 55544443
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2.7e-18 Score=156.24 Aligned_cols=314 Identities=10% Similarity=0.085 Sum_probs=152.4
Q ss_pred HHHHHHhccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCh
Q 012442 84 VHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKY 163 (463)
Q Consensus 84 ~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~ 163 (463)
+..+|. ..|+.++|.++++.+ ++..+|..++.++.+.|++++|++.|.+. ++..+|..++..+...|++
T Consensus 9 ~~~ll~-~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 9 VQVLIE-HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH-HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCH
Confidence 444444 567899999999976 33459999999999999999999999653 4666899999999999999
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012442 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243 (463)
Q Consensus 164 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 243 (463)
++|++.++...+. .++..+.+.++.+|.+. |+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Kl-g~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKT-NRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ----------------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHh-CCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999988777664 56678899999999999 99999988875 377789999999999999999999999966
Q ss_pred HHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCC
Q 012442 244 VERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323 (463)
Q Consensus 244 ~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 323 (463)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +..
T Consensus 149 -----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~ 205 (449)
T 1b89_A 149 -----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVV 205 (449)
T ss_dssp -----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTT
T ss_pred -----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHh
Confidence 26999999999999999999999988 2689999999999999999999665543 233
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCCC------Ch
Q 012442 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA--DEPEIAIEIWNYILENGILP------LE 395 (463)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~ 395 (463)
.+.....++..|.+.|++++|..+++...... +-....|+-|.-+|++- +++.+.++.|.. ..+++| +.
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~ 282 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQA 282 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTT
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHH
Confidence 44445678999999999999999999999876 77788888888888765 344444444432 122333 45
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHCC--------------CccCHHHHHHHHHHHHHhcch
Q 012442 396 ASANELLVGLRNLGRLSDVRRFAEEMLNRR--------------ILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 396 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------------~~~~~~~~~~ll~~~~~~g~~ 446 (463)
..|.-+.-.|.+.++++.|... |.+.- -..+...|-..+..|......
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~ 344 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL 344 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH
Confidence 6899999999999999988763 33331 124567777777777754433
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=1.3e-16 Score=141.92 Aligned_cols=220 Identities=12% Similarity=0.138 Sum_probs=99.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc-C-CCCCHHHHHHHHHHHH
Q 012442 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-I-VDPDGDSFAILLEGWE 228 (463)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~l~~~~~ 228 (463)
..+.++|...|+++.|+..++.. -.|+..++..+...+... ++.++|++.++++.. + .+.+...+..+...+.
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~-~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~ 112 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASH-SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYF 112 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCS-TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCC-CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 33444444444444444433221 133344444444444444 444444444444432 2 1223334444444444
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHH---HHHHHHHHHcCCH
Q 012442 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFF---SNALDILVKLNDS 305 (463)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~g~~ 305 (463)
..|++++|++.+++ |++..++..++..+.+.|++++|.+.|+++.+.. |+.... ...+..+...|++
T Consensus 113 ~~g~~~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~ 182 (291)
T 3mkr_A 113 YDQNPDAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKL 182 (291)
T ss_dssp HTTCHHHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHH
T ss_pred HCCCHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHH
Confidence 55555555444443 2234444444455555555555555555544432 221100 1111222233555
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHH-HHHHHH
Q 012442 306 THAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI-AIEIWN 384 (463)
Q Consensus 306 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~ 384 (463)
++|..+|+++... .+.+...++.+..++.+.|++++|...|+++++.. +-+..++..++..+...|+.++ +.++++
T Consensus 183 ~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~ 259 (291)
T 3mkr_A 183 QDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLS 259 (291)
T ss_dssp HHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5555555554333 22344555555555555555555555555555543 4455555555555555555543 345555
Q ss_pred HHHH
Q 012442 385 YILE 388 (463)
Q Consensus 385 ~~~~ 388 (463)
++.+
T Consensus 260 ~~~~ 263 (291)
T 3mkr_A 260 QLKD 263 (291)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=2.8e-14 Score=137.07 Aligned_cols=307 Identities=13% Similarity=0.066 Sum_probs=259.6
Q ss_pred cCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCh
Q 012442 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGK----NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG----AGKY 163 (463)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~ 163 (463)
.++.+.|...|+.+.+ ..+...+..|...|.. .+++++|...|+...+.+ +...+..+...|.. .++.
T Consensus 92 ~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAAL--KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence 6789999999998765 3477888999999998 899999999999988876 56778888888887 8899
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc----cCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 012442 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICR----QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK----EGNVEE 235 (463)
Q Consensus 164 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 235 (463)
++|++.|++..+.| +...+..+...|.. . ++.++|.++|++..+. .+...+..+...|.. .+++++
T Consensus 168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 168 VMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVE-RNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCC-cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999999864 67778888888877 6 9999999999997662 366788888888886 899999
Q ss_pred HHHHHHHHHHhcCCCCchHhhHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-----CCHh
Q 012442 236 ANKTFGEMVERFEWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKL-----NDST 306 (463)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----g~~~ 306 (463)
|.++|+...+. + +..++..+...|.. .+++++|+..|++..+.| +...+..+...|... ++++
T Consensus 242 A~~~~~~a~~~-~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 242 SRVLFSQSAEQ-G----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHHHHHHHHTT-T----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHHHHHHHHHC-C----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHH
Confidence 99999998764 2 44577778888877 899999999999998876 566777888888887 8999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhC----CCCHHHH
Q 012442 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK---RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEIA 379 (463)
Q Consensus 307 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a 379 (463)
+|...|+.... .+ +...+..+...|...| +.++|.+.|++..+.| +...+..|...|.. .++.++|
T Consensus 314 ~A~~~~~~a~~-~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 314 QAISWYTKSAE-QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp HHHHHHHHHHH-TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHh-cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99999999644 33 5567777888887766 8899999999999886 67888888888888 8999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHHHHHCCC
Q 012442 380 IEIWNYILENGILPLEASANELLVGLRN----LGRLSDVRRFAEEMLNRRI 426 (463)
Q Consensus 380 ~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~ 426 (463)
.+.|++..+.| +...+..|...|.+ .+++++|..+|++..+.+.
T Consensus 387 ~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 387 AIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999876 46688888888888 8999999999999998874
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.1e-14 Score=139.30 Aligned_cols=339 Identities=12% Similarity=0.032 Sum_probs=174.6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----
Q 012442 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED---------GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH----- 176 (463)
Q Consensus 111 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 176 (463)
.....||.|..++...|++++|++.|++..+. .+....+|+.+...|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 33455666666666666666666666654331 1223556666666666666666666666655431
Q ss_pred C-C-CcCHHHHHHHHHHHHcc-CCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHhcCCC
Q 012442 177 G-V-EQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGW---EKEGNVEEANKTFGEMVERFEWN 250 (463)
Q Consensus 177 g-~-~~~~~~~~~ll~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~ 250 (463)
+ . .....++..+..++... .+++++|++.|++..+..+.+...+..+..++ ...++.++|++.+++..+. .
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l---~ 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL---N 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH---C
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc---C
Confidence 0 0 11233343333333322 14566666666666554444455554444442 3345556666666665543 4
Q ss_pred CchHhhHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHH
Q 012442 251 PEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326 (463)
Q Consensus 251 p~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 326 (463)
|++..++..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...++++.... +.+..
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~ 282 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAY 282 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHH
Confidence 5455555544444333 245566666666665543 3345566666666666666666666666654432 12334
Q ss_pred HHHHHHHHHHHc-------------------CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 012442 327 TYNMIFECLIKN-------------------KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387 (463)
Q Consensus 327 ~~~~li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 387 (463)
++..+...|... +..++|...|++..+.. +.+..++..+...|...|++++|.+.|++..
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 444444333221 22455666666665544 4445556666666667777777777777666
Q ss_pred HcCCCCChh--hHHHHHH-HHHcCCCHHHHHHHHHHHHHCC-----------------------CccCHHHHHHHHHHHH
Q 012442 388 ENGILPLEA--SANELLV-GLRNLGRLSDVRRFAEEMLNRR-----------------------ILIYEVTMHKLKKAFY 441 (463)
Q Consensus 388 ~~~~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~~~-----------------------~~~~~~~~~~ll~~~~ 441 (463)
+....+... .+..+.. .+...|++++|+..|++..+.. -+.+..+|..+-..+.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~ 441 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQE 441 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 543322111 1222222 2335566666666666554332 1234567888888888
Q ss_pred Hhcch--hhhHHHHHHH
Q 012442 442 NESRS--MRDIFDSLER 456 (463)
Q Consensus 442 ~~g~~--a~~~~~~~~~ 456 (463)
..|+. |++.+++.++
T Consensus 442 ~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 442 LNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHCC-----------
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 88888 7776666654
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=2.9e-14 Score=138.47 Aligned_cols=369 Identities=9% Similarity=0.005 Sum_probs=265.4
Q ss_pred CHHHHHHHHH-hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHH-
Q 012442 80 TPDLVHEVLQ-LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY- 157 (463)
Q Consensus 80 ~~~~~~~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~- 157 (463)
+...+..++. ...++.+.|..+|+.+....|.+...|..++..+.+.|++++|..+|+++....+ +...|...+...
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 4555655555 3478999999999999998899999999999999999999999999999988764 777888877643
Q ss_pred HhcCChHHHHH----HHHHHHh-CCCCc-CHHHHHHHHHHHHc---------cCCcHHHHHHHHHHhhcCCCCC--HHHH
Q 012442 158 CGAGKYDEAVM----SFDVMSM-HGVEQ-DVVAVNSLLSAICR---------QENQTSRALEFLNRVKKIVDPD--GDSF 220 (463)
Q Consensus 158 ~~~g~~~~A~~----~~~~m~~-~g~~~-~~~~~~~ll~~~~~---------~~~~~~~a~~~~~~~~~~~~~~--~~~~ 220 (463)
...|+.++|.+ +|+.... .|..| +...|...+....+ . |+++.|..+|++... .+.+ ...|
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~a~~~y~~al~-~P~~~~~~~~ 168 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAEN-QRITAVRRVYQRGCV-NPMINIEQLW 168 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHH-HHHHHHHHHHHHHTT-SCCTTHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHH-hHHHHHHHHHHHHHh-chhhhHHHHH
Confidence 45678877765 7777654 35443 56778777776654 5 899999999999887 3222 2344
Q ss_pred HHHHHHH-------------HhcCCHHHHHHHHHHHHH---hcC-----CCCch-------HhhHHHHHHHHHcc----C
Q 012442 221 AILLEGW-------------EKEGNVEEANKTFGEMVE---RFE-----WNPEH-------VLAYETFLITLIRG----K 268 (463)
Q Consensus 221 ~~l~~~~-------------~~~g~~~~a~~~~~~~~~---~~~-----~~p~~-------~~~~~~li~~~~~~----~ 268 (463)
....... .+.++++.|..++.+... ... +.|.. ...|...+...... +
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 4333211 134567778877776321 111 23321 24566655443332 2
Q ss_pred CH----HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-------cCCHh-------HHHHHHHHHHHhcCCCCCHHHHHH
Q 012442 269 QV----DEALKFLRVMKGENCFPTLKFFSNALDILVK-------LNDST-------HAVQLWDIMMVFHGAFPDSLTYNM 330 (463)
Q Consensus 269 ~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~~ 330 (463)
+. +.+..+|++..... +.+...|......+.+ .|+++ +|..+|++.... -.+.+...|..
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~ 326 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFA 326 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHH
Confidence 32 47788999988763 4567888888888776 79987 899999985321 12345788999
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHcC
Q 012442 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTP-LNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVG-LRNL 408 (463)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~ 408 (463)
++..+.+.|++++|..+|+++++.. +.+. ..|..++..+.+.|++++|.++|++..+.. +.+...|...... +...
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHc
Confidence 9999999999999999999999863 2233 588899999999999999999999998753 2223333332222 3468
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch--hhhHHHHHHH
Q 012442 409 GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLER 456 (463)
Q Consensus 409 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--a~~~~~~~~~ 456 (463)
|+.++|..+|++..+.. +-+...|..++..+.+.|+. |+.++++.+.
T Consensus 405 ~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 99999999999988753 23578888999999999988 6666666554
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=9.4e-15 Score=139.79 Aligned_cols=339 Identities=13% Similarity=0.008 Sum_probs=233.3
Q ss_pred CCHHHHHHH--HHhccCCchHHHHHHHHhcC---------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC----
Q 012442 79 PTPDLVHEV--LQLSYDSPSSAVDFFRWAGR---------GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG---- 143 (463)
Q Consensus 79 ~~~~~~~~~--l~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---- 143 (463)
.....|+.+ +....|+.++|++.|+.+.+ ..+....+|+.+..+|...|++++|...+++.....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 334455433 33567999999999987643 245567889999999999999999999998876531
Q ss_pred ----CCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCcCHHHHHHHHHH---HHccCCcHHHHHHHHHHhhcCCC
Q 012442 144 ----VLSLPTFASIFDSYCGA--GKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA---ICRQENQTSRALEFLNRVKKIVD 214 (463)
Q Consensus 144 ----~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~~~~~a~~~~~~~~~~~~ 214 (463)
.....++..+..++... +++++|++.|++..+.. +-+...+..+..+ +... ++.++|++.+++..+..+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~-~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNW-PPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHS-CCCCCTHHHHHHHHHHCS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHhhcCC
Confidence 12466777766666554 57999999999998763 2344445444444 3345 777889999888777556
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH
Q 012442 215 PDGDSFAILLEGWEK----EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK 290 (463)
Q Consensus 215 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 290 (463)
.+..++..+...+.. .|++++|.+++++.... .|.+..++..+...|...|++++|...|++..+.. +-+..
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK---APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 677777777666554 46788999999998765 67778899999999999999999999999998864 33566
Q ss_pred HHHHHHHHHHHc-------------------CCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 291 FFSNALDILVKL-------------------NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351 (463)
Q Consensus 291 ~~~~ll~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 351 (463)
++..+..+|... +..+.|...++....... .+...+..+...|...|++++|...|++.
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND--NLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT--TTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC--chhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 677666655432 235677777777554432 34456788889999999999999999999
Q ss_pred HHCCCCCCHH--HHHHHHH-HHhCCCCHHHHHHHHHHHHHcCC-----------------------CCChhhHHHHHHHH
Q 012442 352 IKNEWQPTPL--NCATAIT-MLLDADEPEIAIEIWNYILENGI-----------------------LPLEASANELLVGL 405 (463)
Q Consensus 352 ~~~~~~~~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~-----------------------~p~~~~~~~li~~~ 405 (463)
++....+... .+..+.. .+...|+.++|...|++..+... +.+..+|..+..+|
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~ 440 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQ 440 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9875332221 2233332 34578999999999888765321 23456888999999
Q ss_pred HcCCCHHHHHHHHHHHHHCC
Q 012442 406 RNLGRLSDVRRFAEEMLNRR 425 (463)
Q Consensus 406 ~~~g~~~~a~~~~~~m~~~~ 425 (463)
...|++++|.+.|++..+.|
T Consensus 441 ~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 441 ELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHCC-------------
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999998764
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=8.7e-17 Score=146.38 Aligned_cols=277 Identities=13% Similarity=0.062 Sum_probs=128.4
Q ss_pred hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHH
Q 012442 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204 (463)
Q Consensus 125 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~ 204 (463)
+.|++++|.++++++. +..+|..++.++.+.|++++|++.|.+ .+|..+|..++.++... |++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~-----~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~-g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTS-GNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhC-CCHHHHHH
Confidence 5688999999999983 335899999999999999999999965 36777999999999998 99999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 012442 205 FLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (463)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (463)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .| +..+|+.+...|...|++++|..+|..+
T Consensus 83 yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN--------GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT--------CC-----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc--------CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 88887764 4557889999999999999999988774 24 5569999999999999999999999977
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 012442 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCA 364 (463)
Q Consensus 285 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (463)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.-..
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 37999999999999999999999984 37899999999999999999996655442 33445566
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCcc------CHHHHHHHH
Q 012442 365 TAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN-RRILI------YEVTMHKLK 437 (463)
Q Consensus 365 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~------~~~~~~~ll 437 (463)
.++..|.+.|++++|..+++...... .-....|+-|.-+|++- +.++..+.++.... .+++| +...|.-+.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 79999999999999999999988654 33456788777777766 34444444443322 23333 355677777
Q ss_pred HHHHHhcch
Q 012442 438 KAFYNESRS 446 (463)
Q Consensus 438 ~~~~~~g~~ 446 (463)
-.|.+.+++
T Consensus 290 ~ly~~~~e~ 298 (449)
T 1b89_A 290 FLYDKYEEY 298 (449)
T ss_dssp HHHHHTTCH
T ss_pred HHHHhhchH
Confidence 777777776
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=5e-15 Score=130.57 Aligned_cols=246 Identities=9% Similarity=-0.024 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC--HHHHHHHHH
Q 012442 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD--VVAVNSLLS 190 (463)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~ 190 (463)
...+......+...|++++|+..|++..+..+.+...+..+...+...|++++|++.+++..+.+-.++ ...|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344556677777888888888888888777766666777788888888888888888888776321111 233667777
Q ss_pred HHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCH
Q 012442 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270 (463)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 270 (463)
.+... |++++|+..|++..+..+.+..+|..+...|...|++++|.+.|++..+ ..|.+...|..+...+...+++
T Consensus 83 ~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKK-GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHc-ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHH
Confidence 77777 8888888888777665556667777777788888888888887777754 3666666777666333334577
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---HhHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHHcCCH
Q 012442 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLND---STHAVQLWDIMMVFHGAFPD------SLTYNMIFECLIKNKRV 341 (463)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~ 341 (463)
++|.+.|++..+.. +.+...+..+..++...|+ ++.|...++++.....-.|+ ...|..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 77777777777653 2335566666666666666 66677777665444322233 13555566666666777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHH
Q 012442 342 HEVEKFFHEMIKNEWQPTPLNCA 364 (463)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~ 364 (463)
++|.+.|++..+.. +.+.....
T Consensus 238 ~~A~~~~~~al~~~-p~~~~a~~ 259 (272)
T 3u4t_A 238 VKADAAWKNILALD-PTNKKAID 259 (272)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHhcC-ccHHHHHH
Confidence 77777777766653 33444333
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=3.4e-15 Score=126.78 Aligned_cols=113 Identities=12% Similarity=-0.054 Sum_probs=44.5
Q ss_pred CCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHH
Q 012442 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEI 382 (463)
Q Consensus 303 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 382 (463)
|++++|...|++.+... +-+...|..+...+...|++++|...|++.++.. .+...+..+..+|...|++++|...
T Consensus 98 g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~ 173 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQ 173 (217)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444444444433321 1123344444444444455555555554444443 3444444444444444555555555
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 012442 383 WNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEE 420 (463)
Q Consensus 383 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 420 (463)
|+++.+.. +.+...+..+...+.+.|++++|.+.+++
T Consensus 174 ~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 174 YAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55444432 11333444444444455555555444444
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.6e-14 Score=125.98 Aligned_cols=223 Identities=13% Similarity=0.021 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CcC----HHHHHH
Q 012442 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV--EQD----VVAVNS 187 (463)
Q Consensus 114 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~~ 187 (463)
..|..+...+...|++++|...|++..+.. .+..+|..+...+...|++++|.+.+++..+... .++ ..+|..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 455566666666666666666666666555 5556666666666666666666666666554210 011 344455
Q ss_pred HHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHcc
Q 012442 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267 (463)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~ 267 (463)
+...+... |++++|...|++.... .|+ ...+.+.|++++|.+.++.+... .|.+...+..+...+...
T Consensus 85 l~~~~~~~-~~~~~A~~~~~~a~~~-~~~-------~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 85 IGNAYHKL-GDLKKTIEYYQKSLTE-HRT-------ADILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHH-CCC-------HHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-ccHHHHHHHHHHHHhc-Cch-------hHHHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHh
Confidence 55555555 5555555555554431 122 12334444555555555555432 333444455555555555
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 012442 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347 (463)
Q Consensus 268 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 347 (463)
|++++|...|++..+.. +.+..++..+..+|...|++++|...++.++... +.+...|..+...+.+.|++++|...
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 55555555555544432 2233444444444444444444444444432221 11233344444444444444444444
Q ss_pred HHHHH
Q 012442 348 FHEMI 352 (463)
Q Consensus 348 ~~~~~ 352 (463)
|++..
T Consensus 230 ~~~a~ 234 (258)
T 3uq3_A 230 LDAAR 234 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.69 E-value=2.4e-14 Score=124.60 Aligned_cols=199 Identities=11% Similarity=-0.014 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012442 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (463)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 192 (463)
...|..+...+...|++++|.+.|+++.+..+.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45566777777777777777777777777666667777777777777777777777777776543 33556666666666
Q ss_pred HccCCcHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCH
Q 012442 193 CRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270 (463)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 270 (463)
... |++++|.++++++.. ..+.+...+..+...+...|++++|.+.|++..+. .|.+...+..+...+...|++
T Consensus 116 ~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 116 YEQ-KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHT-TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCH
T ss_pred HHH-hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCH
Confidence 666 777777777777655 33445566666677777777777777777776654 444555666666667777777
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 012442 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317 (463)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 317 (463)
++|...++++.+.. +.+...+..+...+...|+.++|.++++.+..
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77777777666543 33455566666666666666666666666433
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.6e-14 Score=126.10 Aligned_cols=223 Identities=13% Similarity=0.090 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcC---CCCC----HHHH
Q 012442 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI---VDPD----GDSF 220 (463)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~ 220 (463)
..|..+...+...|++++|++.|++..+.. .+...|..+...+... |++++|+..+++..+. ..++ ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEK-GEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 345556666666666666666666666554 4555555566666666 6666666666654441 1111 3455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 012442 221 AILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILV 300 (463)
Q Consensus 221 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 300 (463)
..+...|...|++++|.+.|++..+. .| +. ..+...|++++|...++++.... +.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~---~~-~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~------------- 137 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE---HR-TA-------DILTKLRNAEKELKKAEAEAYVN-PE------------- 137 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CC-CH-------HHHHHHHHHHHHHHHHHHHHHCC-HH-------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc---Cc-hh-------HHHHHHhHHHHHHHHHHHHHHcC-cc-------------
Confidence 55555555555555555555555543 22 11 22333344455555555544432 11
Q ss_pred HcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHH
Q 012442 301 KLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAI 380 (463)
Q Consensus 301 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 380 (463)
+...+..+...+...|++++|...|+++.+.. +.+..++..+..+|...|++++|.
T Consensus 138 -----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 193 (258)
T 3uq3_A 138 -----------------------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAI 193 (258)
T ss_dssp -----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------------------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHH
Confidence 22334444444555555555555555554443 334445555555555555555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012442 381 EIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 381 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
..++++.+.. +.+...|..+...+.+.|++++|.+.+++..+
T Consensus 194 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 194 ADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5555555432 12344455555555555555555555555443
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=1.2e-14 Score=133.64 Aligned_cols=247 Identities=7% Similarity=-0.022 Sum_probs=176.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012442 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK-YDEAVMSFDVMSMHGVEQDVVAVNSLLS 190 (463)
Q Consensus 112 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 190 (463)
+...|+.+...+.+.|++++|+..|+.+.+.++.+..+|+.+..++...|+ +++|++.|++.++.. +-+...|+.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 456788888888888999999999988888888888888888888888886 888888888888764 446777888888
Q ss_pred HHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHc-cCC
Q 012442 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR-GKQ 269 (463)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~-~~~ 269 (463)
++... |++++|+..|+++.+..+.+...|..+..++.+.|++++|++.|+++.+. .|++..+|+.+...+.. .|.
T Consensus 175 ~~~~~-g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWL-RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHH-TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHc-cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCc
Confidence 88888 88888888888887766777888888888888888888888888888765 67777788888888877 555
Q ss_pred HHHH-----HHHHHHHhhCCCCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC---
Q 012442 270 VDEA-----LKFLRVMKGENCFPTLKFFSNALDILVKLN--DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK--- 339 (463)
Q Consensus 270 ~~~a-----~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--- 339 (463)
.++| ++.|++..+.. +-+...|..+...+...| ++++|.+.+..+ .....+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~---~~~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL---QPSHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH---TTTCCCHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh---ccCCCCHHHHHHHHHHHHHHhccc
Confidence 4666 46677666653 334556666666666666 466676666663 222334556666666666653
Q ss_pred ------CHhHHHHHHHHH-HHCCCCCCHHHHHHHHH
Q 012442 340 ------RVHEVEKFFHEM-IKNEWQPTPLNCATAIT 368 (463)
Q Consensus 340 ------~~~~a~~~~~~~-~~~~~~~~~~~~~~li~ 368 (463)
..++|.++|+++ .+.. +.....|..+..
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~ 361 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGR 361 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 246666666666 4442 333334443333
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=1.9e-14 Score=122.75 Aligned_cols=203 Identities=11% Similarity=0.035 Sum_probs=120.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012442 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295 (463)
Q Consensus 216 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 295 (463)
+...+..+...+...|++++|.+.|+++.+. .|.+...+..+...+...|++++|.+.+++..+.. +.+..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS---DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 3445555566666666666666666666543 34445556666666666666666666666665543 2345556666
Q ss_pred HHHHHHc-CCHhHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCC
Q 012442 296 LDILVKL-NDSTHAVQLWDIMMVFHGAFP-DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA 373 (463)
Q Consensus 296 l~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 373 (463)
...+... |++++|...++.+.. .+..| +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 6666666 666666666666433 22222 24555666666666666666666666666553 34466666666666667
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 012442 374 DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424 (463)
Q Consensus 374 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 424 (463)
|++++|..+++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777766665432134555555666666677777777776666543
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=9.7e-15 Score=123.97 Aligned_cols=195 Identities=14% Similarity=0.051 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHH
Q 012442 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLI 262 (463)
Q Consensus 183 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~ 262 (463)
..+..+...+.+. |++++|+..|++..+..+.+...+..+...+.+.|++++|...|++..+. .|++...+..+..
T Consensus 6 ~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 6 QNPLRLGVQLYAL-GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR---TPRYLGGYMVLSE 81 (217)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHH
Confidence 3344444444444 44444444444444433444444444444444444444444444444433 3444444444444
Q ss_pred HHHcc-----------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 012442 263 TLIRG-----------KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331 (463)
Q Consensus 263 ~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 331 (463)
.+... |++++|+..|++..+.. +-+...+..+..++...|++++|...|++++... .+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~l 157 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHH
Confidence 44444 55555555555554432 2234444555555555555555555555543332 344455555
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 012442 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYI 386 (463)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 386 (463)
...|...|++++|...|++..+.. +.+...+..+...+...|++++|...|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555555555555555543 444555555555556666666665555543
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=2.8e-14 Score=124.17 Aligned_cols=201 Identities=13% Similarity=0.110 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012442 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296 (463)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 296 (463)
...|..+...+...|++++|.+.|+++.+. .|.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI---DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 345555666666666666666666666553 44455566666666666666666666666665543 23455666666
Q ss_pred HHHHHcCCHhHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCC
Q 012442 297 DILVKLNDSTHAVQLWDIMMVFHGAFP-DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375 (463)
Q Consensus 297 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 375 (463)
..|...|++++|.++++++.. .+..| +...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|+
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC
Confidence 666666666666666666433 22223 34556666666667777777777777766654 4456666677777777777
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 012442 376 PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424 (463)
Q Consensus 376 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 424 (463)
+++|...++++.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 191 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 191 YVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777777766543 234556666666777777777777777777654
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=1.1e-14 Score=126.03 Aligned_cols=201 Identities=14% Similarity=0.084 Sum_probs=109.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012442 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190 (463)
Q Consensus 111 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 190 (463)
.....|..+...+...|++++|...|+++.+..+.+...+..+...+...|++++|++.|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4445566666666677777777777777666666566666667777777777777777777666543 334555666666
Q ss_pred HHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCH
Q 012442 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270 (463)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 270 (463)
.+... |++++|.++++++.+..+.+...+..+...+.+.|++++|.+.++++.+. .|.+...+..+...+...|++
T Consensus 100 ~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 100 VYVVK-EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHh-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCCH
Confidence 66666 66666666666665544455566666666666666666666666666553 344455566666666666666
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 012442 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317 (463)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 317 (463)
++|...|++..+.. +.+..++..+..+|...|++++|...++.+..
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 66666666655543 23345555555556666666666666655433
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=5.7e-14 Score=123.72 Aligned_cols=233 Identities=10% Similarity=0.002 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCC----HHHHHHH
Q 012442 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD----GDSFAIL 223 (463)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l 223 (463)
..+......+...|++++|++.|++..+.. +.+...+..+...+... |++++|+..+++..+ .+++ ...|..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYEL-AKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHT-TCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 345566777778888888888888887653 23444677777777777 888888888887766 2222 2347777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 012442 224 LEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303 (463)
Q Consensus 224 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 303 (463)
...+...|++++|.+.|+...+. .|.+..+|..+...|...|++++|...|++..+.. +.+...+..+...+...+
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDR---DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHH
Confidence 78888888888888888877664 55566677777788888888888888887776653 334555555552344445
Q ss_pred CHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC---HhHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHhCC
Q 012442 304 DSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKR---VHEVEKFFHEMIKNE-WQPT------PLNCATAITMLLDA 373 (463)
Q Consensus 304 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~ 373 (463)
++++|...|+.+.... +.+...+..+...+...|+ +++|...|+++.+.. -.|+ ..+|..+...|...
T Consensus 157 ~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp CHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 7777777777754432 2234555556666666666 666666666665431 0122 13455555566666
Q ss_pred CCHHHHHHHHHHHHHc
Q 012442 374 DEPEIAIEIWNYILEN 389 (463)
Q Consensus 374 g~~~~a~~~~~~~~~~ 389 (463)
|++++|.+.|+++.+.
T Consensus 235 ~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 235 RDKVKADAAWKNILAL 250 (272)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 6666666666666653
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=2.1e-13 Score=116.17 Aligned_cols=199 Identities=9% Similarity=-0.066 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 012442 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228 (463)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (463)
.+..+...+...|++++|.+.|+++.+.. +.+...+..+...+... |++++|.++++++.+..+.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYL-KVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34444444444444444444444444322 22233344444444444 44444444444443323334444444555555
Q ss_pred hc-CCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 012442 229 KE-GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307 (463)
Q Consensus 229 ~~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 307 (463)
.. |++++|.+.++++.+ .+..|.+...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++
T Consensus 88 ~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 55 555555555555444 12333334444445555555555555555555444432 1223444444444444444444
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 012442 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352 (463)
Q Consensus 308 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (463)
|..+++.+..... ..+...+..+...+...|+.+.+..+++.+.
T Consensus 166 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 166 ADYYFKKYQSRVE-VLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4444444332211 0233333344444444444444444444443
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=1.3e-13 Score=126.69 Aligned_cols=231 Identities=8% Similarity=0.027 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc-HHHHHHHHHHhhcCCCCCHHHHHHHH
Q 012442 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ-TSRALEFLNRVKKIVDPDGDSFAILL 224 (463)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~ 224 (463)
+...|..+...+.+.|++++|++.+++.++.. +-+...|+.+..++... |+ +++|+..|+++....+.+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~-g~d~~eAl~~~~~al~l~P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSL-QKDLHEEMNYITAIIEEQPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 46678888888888888888888888888754 44567777777777777 75 88888888887776667778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-cC
Q 012442 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK-LN 303 (463)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g 303 (463)
.++...|++++|+..|+++.+. .|++..+|..+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.+ .|
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~l---dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHh---CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC
Confidence 8888888888888888888665 67777788888888888888888888888877765 3356677777777776 44
Q ss_pred CHhHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCC--
Q 012442 304 DSTHA-----VQLWDIMMVFHGAFPDSLTYNMIFECLIKNK--RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD-- 374 (463)
Q Consensus 304 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 374 (463)
..++| ...|++.+... +-+...|+.+...+...| ++++|.+.+.++ +.. +.+...+..+..+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcc
Confidence 44555 35555543322 123445555555555555 455566555555 222 344455555555555442
Q ss_pred -------CHHHHHHHHHHH
Q 012442 375 -------EPEIAIEIWNYI 386 (463)
Q Consensus 375 -------~~~~a~~~~~~~ 386 (463)
..++|.++++++
T Consensus 326 ~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEIL 344 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHH
Confidence 135555555555
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=5.5e-15 Score=130.43 Aligned_cols=219 Identities=12% Similarity=0.037 Sum_probs=102.8
Q ss_pred CChHHHHHHHHHHHhCCC---CcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012442 161 GKYDEAVMSFDVMSMHGV---EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237 (463)
Q Consensus 161 g~~~~A~~~~~~m~~~g~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 237 (463)
|++++|++.|+++.+... +.+..++..+...+... |++++|...|+++.+..+.+..+|..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL-GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555555554321 01233444444455555 55555555555544433444555555555555555555555
Q ss_pred HHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 012442 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMV 317 (463)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 317 (463)
+.|++..+. .|.+..++..+...+...|++++|...|+++.+.. |+.......+..+...|++++|...++....
T Consensus 98 ~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 98 EAFDSVLEL---DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 555555443 34344455555555555555555555555555432 2222222333333444555555555544333
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 318 FHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQ---PTPLNCATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 318 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
... ++...+ .++..+...++.++|...+.+..+.... .+..++..+...|...|++++|...|+++.+
T Consensus 173 ~~~--~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 173 KSD--KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HSC--CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCC--cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 221 121122 2333444444555555555554432100 0134445555555555555555555555554
No 49
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.64 E-value=1.6e-12 Score=132.29 Aligned_cols=308 Identities=14% Similarity=0.137 Sum_probs=154.5
Q ss_pred hccCCchHHHHHHHHhcCCC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQ---RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 166 (463)
...|.+.+|+++++.+.-.. ..+....+.++....+. +..+..++.+..... + ...+...+...|.+++|
T Consensus 996 ~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~---d---~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 996 MTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY---D---APDIANIAISNELFEEA 1068 (1630)
T ss_pred HhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc---c---HHHHHHHHHhCCCHHHH
Confidence 34566666666666555321 13334444454444443 233333333333211 0 12244455556666666
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012442 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246 (463)
Q Consensus 167 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 246 (463)
..+|++.. -.....+.++. .. +++++|.++.++. -+..+|..+..++.+.|++++|.+.|...
T Consensus 1069 f~IYkKa~-----~~~~A~~VLie---~i-~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1069 FAIFRKFD-----VNTSAVQVLIE---HI-GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHcC-----CHHHHHHHHHH---HH-hhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 66666642 11111222222 23 5555555555544 23455556666666666666666665432
Q ss_pred cCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHH
Q 012442 247 FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSL 326 (463)
Q Consensus 247 ~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 326 (463)
+|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+.+ .++..
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~--------~~n~a 1196 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN--------GPNNA 1196 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh--------CCCHH
Confidence 144455556666666666666666665544433 222222235555555555543222211 12334
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------------
Q 012442 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILEN----------------- 389 (463)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------------- 389 (463)
.|..+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++....
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence 4444555555555555555555553 24555555555555555555544433110
Q ss_pred -------CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 390 -------GILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 390 -------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
++..+...+..++..|.+.|.+++|+.+++...... +-....|.-|...+.+..-.
T Consensus 1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 122244566677778888888888888887766443 33445666666666666544
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=7.7e-15 Score=129.47 Aligned_cols=216 Identities=11% Similarity=-0.049 Sum_probs=132.4
Q ss_pred CCchHHHHHHHHhcCCC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHH
Q 012442 93 DSPSSAVDFFRWAGRGQ----RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168 (463)
Q Consensus 93 ~~~~~a~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (463)
++++.|+..|+.+.... +.+..+|..+...+...|++++|...|+++.+.++.+..+|..+...+...|++++|.+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 55677777777666521 23456677777777777777777777777777766667777777777777777777777
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 012442 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFE 248 (463)
Q Consensus 169 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 248 (463)
.|++..+.. +.+...+..+...+... |++++|...|+++.+..+.+. .....+..+...|++++|...+++....
T Consensus 99 ~~~~al~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~-- 173 (275)
T 1xnf_A 99 AFDSVLELD-PTYNYAHLNRGIALYYG-GRDKLAQDDLLAFYQDDPNDP-FRSLWLYLAEQKLDEKQAKEVLKQHFEK-- 173 (275)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHH--
T ss_pred HHHHHHhcC-ccccHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 777776643 33456666666777776 777777777777665322232 3333334445567777777777666554
Q ss_pred CCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 249 WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP---TLKFFSNALDILVKLNDSTHAVQLWDIM 315 (463)
Q Consensus 249 ~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 315 (463)
.|++...+ .++..+...++.++|...+++..+..... +..++..+...|.+.|++++|...|+.+
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33233333 35555666666667777776665442110 1344555555566666666666666654
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=5e-14 Score=121.73 Aligned_cols=199 Identities=16% Similarity=0.147 Sum_probs=170.6
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMS 169 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (463)
...|+++.|..+|+.+....+.+...+..+...+...|++++|+..|+++.+..+.+..++..+...+...|++++|.+.
T Consensus 34 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 113 (243)
T 2q7f_A 34 SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDM 113 (243)
T ss_dssp --------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHH
Confidence 35689999999999988877888999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 012442 170 FDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW 249 (463)
Q Consensus 170 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 249 (463)
++++.+.. +.+...+..+...+... |++++|...++++.+..+.+...+..+...+.+.|++++|.+.|++..+.
T Consensus 114 ~~~~~~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 188 (243)
T 2q7f_A 114 FEKALRAG-MENGDLFYMLGTVLVKL-EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--- 188 (243)
T ss_dssp HHHHHHHT-CCSHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 99998764 55778888899999999 99999999999988866778899999999999999999999999999875
Q ss_pred CCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 012442 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSN 294 (463)
Q Consensus 250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 294 (463)
.|++..++..+...+...|++++|.+.|+++.+.. +.+...+..
T Consensus 189 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 232 (243)
T 2q7f_A 189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHA 232 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHH
Confidence 56677899999999999999999999999998864 233444433
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=3.3e-14 Score=132.93 Aligned_cols=301 Identities=12% Similarity=0.019 Sum_probs=198.9
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCc-
Q 012442 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS----LPTFASIFDSYCGAGKYDEAVMSFDVMSMH----GVEQ- 180 (463)
Q Consensus 110 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~- 180 (463)
......+......+...|++++|...|++..+.++.+ ..++..+...+...|++++|...+++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 4556677778888889999999999999888876655 357788888889999999999988876532 2112
Q ss_pred CHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCC--CCC----HHHHHHHHHHHHhcCC--------------------HH
Q 012442 181 DVVAVNSLLSAICRQENQTSRALEFLNRVKKIV--DPD----GDSFAILLEGWEKEGN--------------------VE 234 (463)
Q Consensus 181 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~--------------------~~ 234 (463)
...++..+...+... |++++|...+++..... ..+ ..++..+...|...|+ ++
T Consensus 86 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 86 EAKASGNLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 244566777777777 88999988888765411 112 4477788888888888 88
Q ss_pred HHHHHHHHHHHh---cCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCCHh
Q 012442 235 EANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC-FPT----LKFFSNALDILVKLNDST 306 (463)
Q Consensus 235 ~a~~~~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~g~~~ 306 (463)
+|.+.+++..+. .+..+....++..+...+...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888766432 122222345677778888888888888888887754310 011 236677777788888888
Q ss_pred HHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhCCCCHH
Q 012442 307 HAVQLWDIMMVFHGAFPD----SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW-QPT----PLNCATAITMLLDADEPE 377 (463)
Q Consensus 307 ~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~ 377 (463)
+|...+++......-..+ ..++..+...|...|++++|...+++..+..- ..+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 888888775432211111 44666777777778888888888777665310 011 445667777777777888
Q ss_pred HHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHcCCCH
Q 012442 378 IAIEIWNYILEN----GILP-LEASANELLVGLRNLGRL 411 (463)
Q Consensus 378 ~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~ 411 (463)
+|.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 777777776542 1111 123444555555555544
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=7.6e-14 Score=130.48 Aligned_cols=299 Identities=15% Similarity=0.039 Sum_probs=225.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCcHHHHHHHHHHhhc-----C-CCC
Q 012442 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----VVAVNSLLSAICRQENQTSRALEFLNRVKK-----I-VDP 215 (463)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~-~~~ 215 (463)
....+......+...|++++|...|++..+.+ +.+ ...+..+...+... |++++|...+++... + .+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYL-HDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhccccHH
Confidence 45667788889999999999999999998764 223 35677888889988 999999999998654 1 122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCchHhhHHHHHHHHHccCC--------------------HHH
Q 012442 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERF---EWNPEHVLAYETFLITLIRGKQ--------------------VDE 272 (463)
Q Consensus 216 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~~li~~~~~~~~--------------------~~~ 272 (463)
...++..+...|...|++++|...+++..+.. +-.+....++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 35678889999999999999999999876531 1111124478889999999999 999
Q ss_pred HHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHcCCHhH
Q 012442 273 ALKFLRVMKGE----NCFP-TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD----SLTYNMIFECLIKNKRVHE 343 (463)
Q Consensus 273 a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~ 343 (463)
|...+++..+. +..+ ...++..+...|...|++++|...+++.+....-.++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999886542 2111 2346888889999999999999999987543322233 3378888899999999999
Q ss_pred HHHHHHHHHHCCC-CCC----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHcCCCHHH
Q 012442 344 VEKFFHEMIKNEW-QPT----PLNCATAITMLLDADEPEIAIEIWNYILENGIL-PL----EASANELLVGLRNLGRLSD 413 (463)
Q Consensus 344 a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~ 413 (463)
|...+++..+..- ..+ ..++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999875310 011 557888999999999999999999988753111 11 4577788889999999999
Q ss_pred HHHHHHHHHHC----CCc-cCHHHHHHHHHHHHHhcch
Q 012442 414 VRRFAEEMLNR----RIL-IYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 414 a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~ 446 (463)
|.+.+++..+. +.. ....++..+...+...|+.
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 99999987643 221 2245666677777777755
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=2e-12 Score=113.98 Aligned_cols=223 Identities=10% Similarity=0.028 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc----cCCcHHHHHHHHHHhhcCCCCCHHHHH
Q 012442 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR----QENQTSRALEFLNRVKKIVDPDGDSFA 221 (463)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~ 221 (463)
+..++..+...+...|++++|++.|++..+. -+...+..+...+.. . +++++|+.+|++..+. .+...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~--~~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVE-KNLKKAASFYAKACDL--NYSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcC-CCHHHHHHHHHHHHHC--CCHHHHH
Confidence 3455556666666666666666666666652 233445555555555 5 5666666666554441 1455555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 012442 222 ILLEGWEK----EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFS 293 (463)
Q Consensus 222 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~ 293 (463)
.+...|.. .+++++|.+.|++..+. + +..++..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL-K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc-C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 55555555 55555555555555542 2 33345555555555 555555555555555543 334444
Q ss_pred HHHHHHHH----cCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 012442 294 NALDILVK----LNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK----NKRVHEVEKFFHEMIKNEWQPTPLNCAT 365 (463)
Q Consensus 294 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 365 (463)
.+...|.. .+++++|...|+..... .+...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 44444444 45555555555553221 123344444444444 455555555555554443 1334444
Q ss_pred HHHHHhC----CCCHHHHHHHHHHHHHc
Q 012442 366 AITMLLD----ADEPEIAIEIWNYILEN 389 (463)
Q Consensus 366 li~~~~~----~g~~~~a~~~~~~~~~~ 389 (463)
+...|.. .+++++|.+.|++..+.
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 4444444 44455555555444443
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=5.6e-14 Score=131.79 Aligned_cols=273 Identities=10% Similarity=0.011 Sum_probs=156.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CcCHHHH
Q 012442 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL----PTFASIFDSYCGAGKYDEAVMSFDVMSMH----GV-EQDVVAV 185 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~ 185 (463)
.+..+...+...|++++|+..|+++.+.++.+. .+|..+...|...|++++|++.+++..+. +- .....++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 445566677778888888888888777765543 46777777888888888888888776542 11 2233456
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHhhcC------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 012442 186 NSLLSAICRQENQTSRALEFLNRVKKI------VDPDGDSFAILLEGWEKEGN-----------------VEEANKTFGE 242 (463)
Q Consensus 186 ~~ll~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~ 242 (463)
..+...+... |++++|...+++.... .+....++..+...|...|+ +++|.+.+++
T Consensus 130 ~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 130 GNLGNTLKVM-GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 6666677777 7888887777775441 12234566777777777777 7777777766
Q ss_pred HHHh---cCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 243 MVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PT----LKFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 243 ~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
..+. .+..+....++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5432 1112223346666777777777777777777766442100 01 12455556666666666666666665
Q ss_pred HHHhcCCCC----CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 012442 315 MMVFHGAFP----DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE-----WQPTPLNCATAITMLLDADEPEIAIEIWNY 385 (463)
Q Consensus 315 ~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 385 (463)
.+....-.. ...++..+...|...|++++|...+++..+.. ......++..+...|...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 433211111 12344455555555555555555555544321 000122344444445555555555555544
Q ss_pred HHH
Q 012442 386 ILE 388 (463)
Q Consensus 386 ~~~ 388 (463)
..+
T Consensus 369 al~ 371 (411)
T 4a1s_A 369 HLQ 371 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=5.3e-14 Score=131.96 Aligned_cols=276 Identities=14% Similarity=0.059 Sum_probs=211.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHccCCcHHHHHHHHHHhhcC------CCCC
Q 012442 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV----VAVNSLLSAICRQENQTSRALEFLNRVKKI------VDPD 216 (463)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~------~~~~ 216 (463)
...+..+...+...|++++|++.|+++.+.+ +.+. ..|..+...+... |++++|+..+++..+. .+..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYL-GDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3445567788999999999999999998764 2233 4678888889999 9999999999987551 2334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---cCCCCchHhhHHHHHHHHHccCC-----------------HHHHHHH
Q 012442 217 GDSFAILLEGWEKEGNVEEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQ-----------------VDEALKF 276 (463)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~-----------------~~~a~~~ 276 (463)
..++..+...|...|++++|.+.|++..+. .+-.+....++..+...|...|+ +++|++.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 577888999999999999999999987653 12233345688899999999999 9999999
Q ss_pred HHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHcCCHhHHHHH
Q 012442 277 LRVMKGE----NCFP-TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD----SLTYNMIFECLIKNKRVHEVEKF 347 (463)
Q Consensus 277 ~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~ 347 (463)
+++..+. +..+ ...++..+...|...|++++|...+++.+....-..+ ...+..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9886542 1111 2347788889999999999999999986543321122 23678888899999999999999
Q ss_pred HHHHHHCCC--C---CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CC-CCChhhHHHHHHHHHcCCCHHHHHHH
Q 012442 348 FHEMIKNEW--Q---PTPLNCATAITMLLDADEPEIAIEIWNYILEN----GI-LPLEASANELLVGLRNLGRLSDVRRF 417 (463)
Q Consensus 348 ~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~ 417 (463)
|++..+..- . ....++..+...|...|++++|...+++..+. +. .....++..+...|...|++++|.++
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 998876420 0 12567888999999999999999999988753 11 11134777888899999999999999
Q ss_pred HHHHHHC
Q 012442 418 AEEMLNR 424 (463)
Q Consensus 418 ~~~m~~~ 424 (463)
+++..+.
T Consensus 366 ~~~al~~ 372 (411)
T 4a1s_A 366 AEQHLQL 372 (411)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 57
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.61 E-value=3e-11 Score=123.14 Aligned_cols=292 Identities=9% Similarity=0.056 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012442 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (463)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 192 (463)
..+|..+..++...|++++|++.|.+. .+...|..++.+|.+.|++++|.+.|....+.. ++....+.+..+|
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 1177 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHH
Confidence 334444444444444444444444332 233334444444444444444444444433321 2222222244444
Q ss_pred HccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHH
Q 012442 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272 (463)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~ 272 (463)
++. +++++...+. + .++...|..+...|...|++++|..+|... ..|..+..+|++.|++++
T Consensus 1178 AKl-~rleele~fI----~--~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~ 1239 (1630)
T 1xi4_A 1178 AKT-NRLAELEEFI----N--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQA 1239 (1630)
T ss_pred Hhh-cCHHHHHHHH----h--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHH
Confidence 444 4444322221 0 123334444555555555555555555442 134555555555555555
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 012442 273 ALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352 (463)
Q Consensus 273 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (463)
|.+.+++. .+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++..+
T Consensus 1240 AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1240 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55555443 1234555555555555555555444332 22355566788888889999999999998887
Q ss_pred HCCCCCCHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCCC------ChhhHHHHHHHHHcCCCHHHHHHH-------
Q 012442 353 KNEWQPTPLNCATAITMLLDA--DEPEIAIEIWNYILENGILP------LEASANELLVGLRNLGRLSDVRRF------- 417 (463)
Q Consensus 353 ~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~a~~~------- 417 (463)
... +-....|+-+...|++- +++.++.++|..-.. +++ +...|.-++..|.+.|+++.|...
T Consensus 1308 ~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~ 1384 (1630)
T 1xi4_A 1308 GLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 1384 (1630)
T ss_pred ccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHh
Confidence 665 55566676666666653 345555555543222 222 456899999999999999999832
Q ss_pred -HHHHHH---CCCccCHHHHHHHHHHHHHhc
Q 012442 418 -AEEMLN---RRILIYEVTMHKLKKAFYNES 444 (463)
Q Consensus 418 -~~~m~~---~~~~~~~~~~~~ll~~~~~~g 444 (463)
|++-.- ..-..+...|...+.-|....
T Consensus 1385 a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1385 AWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred hhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 221110 012457778888888887666
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=4.1e-12 Score=111.95 Aligned_cols=223 Identities=10% Similarity=-0.033 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 012442 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG----AGKYDEAVMSFDVMSMHGVEQDVVAVNS 187 (463)
Q Consensus 112 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 187 (463)
++.++..+...+...|++++|.+.|++..+. .+..++..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444444444444445555555555444442 133344444444444 445555555555444432 3344444
Q ss_pred HHHHHHc----cCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCchHhhHHH
Q 012442 188 LLSAICR----QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK----EGNVEEANKTFGEMVERFEWNPEHVLAYET 259 (463)
Q Consensus 188 ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~ 259 (463)
+...|.. . +++++|+..|++..+. .+...+..+...|.. .+++++|.+.|++..+. + +..++..
T Consensus 80 lg~~~~~g~~~~-~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~----~~~a~~~ 151 (273)
T 1ouv_A 80 LGNLYYSGQGVS-QNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N----DGDGCTI 151 (273)
T ss_dssp HHHHHHHTSSSC-CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T----CHHHHHH
T ss_pred HHHHHhCCCCcc-cCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C----cHHHHHH
Confidence 4444444 4 4555555554444331 134444444444444 44555555555444442 1 1223444
Q ss_pred HHHHHHc----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 012442 260 FLITLIR----GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK----LNDSTHAVQLWDIMMVFHGAFPDSLTYNMI 331 (463)
Q Consensus 260 li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 331 (463)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+..... + +...+..+
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l 224 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-C---CHHHHHHH
Confidence 4444444 445555555555444433 23344444444444 44555555555443221 1 13334444
Q ss_pred HHHHHH----cCCHhHHHHHHHHHHHC
Q 012442 332 FECLIK----NKRVHEVEKFFHEMIKN 354 (463)
Q Consensus 332 i~~~~~----~~~~~~a~~~~~~~~~~ 354 (463)
...|.+ .+++++|.+.|++..+.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 444444 44445555555544444
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=4.6e-14 Score=128.13 Aligned_cols=278 Identities=13% Similarity=0.028 Sum_probs=150.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-cCHHHHHHHHH
Q 012442 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS----LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVE-QDVVAVNSLLS 190 (463)
Q Consensus 116 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~ 190 (463)
+......+...|++++|...|+++.+..+.+ ...+..+...+...|++++|.+.+++..+..-. .+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------- 78 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD--------- 78 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc---------
Confidence 4444555566666666666666665554433 245555566666666666666666554421000 00
Q ss_pred HHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC---chHhhHHHHHHHHHcc
Q 012442 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP---EHVLAYETFLITLIRG 267 (463)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~~li~~~~~~ 267 (463)
.+....++..+...|...|++++|.+.+++..+...-.+ ....++..+...+...
T Consensus 79 ----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 79 ----------------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 136 (338)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc
Confidence 001123334444444444555544444444332100000 0122444445555555
Q ss_pred CC--------------------HHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCC
Q 012442 268 KQ--------------------VDEALKFLRVMKGE----NCFP-TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF 322 (463)
Q Consensus 268 ~~--------------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 322 (463)
|+ +++|.+.+++.... +..+ ...++..+...+...|++++|...+++.+....-.
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 55 55555555443221 1011 12345556666667777777777766653321111
Q ss_pred CC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Q 012442 323 PD----SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW-QPT----PLNCATAITMLLDADEPEIAIEIWNYILEN---- 389 (463)
Q Consensus 323 ~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---- 389 (463)
++ ..++..+...+...|++++|...+++..+..- ..+ ..++..+...|...|++++|...++++.+.
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 11 23566777777778888888888877664310 011 456677778888888888888888877652
Q ss_pred CCC-CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 012442 390 GIL-PLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424 (463)
Q Consensus 390 ~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 424 (463)
+.. ....++..+...|.+.|++++|.+.+++..+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111 11336667778888889999998888887754
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=7.1e-14 Score=126.85 Aligned_cols=263 Identities=10% Similarity=0.011 Sum_probs=151.5
Q ss_pred hccCCchHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHcC----C--CCHHHHHHHHHHHHh
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLS----PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG----V--LSLPTFASIFDSYCG 159 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~--~~~~~~~~li~~~~~ 159 (463)
...|+++.|+.+|+.+.+..+.+ ...|..+...+...|++++|.+.+++..... . ....++..+...+..
T Consensus 16 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 95 (338)
T 3ro2_A 16 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 95 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 45799999999999887744445 4688899999999999999999999865542 1 235678888889999
Q ss_pred cCChHHHHHHHHHHHhCCC-CcC----HHHHHHHHHHHHccCCc--------------------HHHHHHHHHHhhc---
Q 012442 160 AGKYDEAVMSFDVMSMHGV-EQD----VVAVNSLLSAICRQENQ--------------------TSRALEFLNRVKK--- 211 (463)
Q Consensus 160 ~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~ll~~~~~~~~~--------------------~~~a~~~~~~~~~--- 211 (463)
.|++++|.+.+++..+..- .++ ..++..+...+... |+ +++|...+++...
T Consensus 96 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~ 174 (338)
T 3ro2_A 96 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc-CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888764310 111 22555666666666 66 6666666655432
Q ss_pred --C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 012442 212 --I-VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF---EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC 285 (463)
Q Consensus 212 --~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 285 (463)
+ .+....++..+...+...|++++|.+.+++..+.. +..+....++..+..
T Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~----------------------- 231 (338)
T 3ro2_A 175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN----------------------- 231 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------------------
T ss_pred hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----------------------
Confidence 1 11112344555555555555555555555554320 000001113444444
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC-----C
Q 012442 286 FPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD----SLTYNMIFECLIKNKRVHEVEKFFHEMIKNE-----W 356 (463)
Q Consensus 286 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~ 356 (463)
.+...|++++|...+++......-..+ ..++..+...|...|++++|...+++..+.. .
T Consensus 232 ------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 232 ------------AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp ------------HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred ------------HHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 444445555554444443221111111 2344455555555566666665555554321 0
Q ss_pred CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 357 QPTPLNCATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
.....++..+...|...|++++|...+++..+
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 00123455556666666666666666666554
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=1.6e-12 Score=116.80 Aligned_cols=218 Identities=8% Similarity=-0.015 Sum_probs=166.8
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-------CCCh-------HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhc
Q 012442 96 SSAVDFFRWAGRGQRLSPYAWNLMVDVLGK-------NGRF-------EQMWNAVRVMKE-DGVLSLPTFASIFDSYCGA 160 (463)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~m~~-~~~~~~~~~~~li~~~~~~ 160 (463)
+.|..+|+.+....+.++..|..++..+.. .|++ ++|..+|++..+ ..+.+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 577788888877778888899988888763 5776 889999999888 4666788888899999999
Q ss_pred CChHHHHHHHHHHHhCCCCcC-HH-HHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 012442 161 GKYDEAVMSFDVMSMHGVEQD-VV-AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE-KEGNVEEAN 237 (463)
Q Consensus 161 g~~~~A~~~~~~m~~~g~~~~-~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~ 237 (463)
|++++|.++|++..+. .|+ .. .|..+...+.+. |++++|..+|++..+..+.+...|........ ..|++++|.
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA-EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHH-HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999998874 443 33 788888888888 88888888888887755556666654444432 268888888
Q ss_pred HHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC-CCC--CHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 238 KTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN-CFP--TLKFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
++|+...+. .|++...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.+.|..++++
T Consensus 190 ~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888765 56667788888888888888888888888887763 344 356777777777778888888888877
Q ss_pred HHHhc
Q 012442 315 MMVFH 319 (463)
Q Consensus 315 ~~~~~ 319 (463)
++...
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 65543
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=5e-13 Score=110.15 Aligned_cols=169 Identities=16% Similarity=0.183 Sum_probs=138.7
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012442 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190 (463)
Q Consensus 111 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 190 (463)
-++..|..+...|.+.|++++|++.|++..+.++.+..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3567888899999999999999999999888888888888889999999999999999888887654 445666666667
Q ss_pred HHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCH
Q 012442 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270 (463)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 270 (463)
.+... ++++.+...+.+.....+.+...+..+...|.+.|++++|++.|++..+. .|.+..+|..+...|.+.|++
T Consensus 82 ~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMI-DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHc-CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cchhhhHHHHHHHHHHHCCCH
Confidence 77777 88888888888877766677888888888888888888888888888765 677777888888888888888
Q ss_pred HHHHHHHHHHhhCC
Q 012442 271 DEALKFLRVMKGEN 284 (463)
Q Consensus 271 ~~a~~~~~~m~~~~ 284 (463)
++|++.|++..+..
T Consensus 158 ~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 158 DEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 88888888887753
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=3.4e-12 Score=114.60 Aligned_cols=219 Identities=11% Similarity=0.047 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 130 EQMWNAVRVMKEDGVLSLPTFASIFDSYCG-------AGKY-------DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 130 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
++|..+|++.....+.+...|..++..+.. .|++ ++|..+|++..+.--+-+...|..+...+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 567777777777666677777777766653 3554 56666666665421122344555555555555
Q ss_pred CCcHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHH-ccCCHHHH
Q 012442 196 ENQTSRALEFLNRVKKIVDPDGD-SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI-RGKQVDEA 273 (463)
Q Consensus 196 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~-~~~~~~~a 273 (463)
|++++|..+|++..+..+.+.. +|..++..+.+.|++++|.++|++..+. .|.+...|........ ..|++++|
T Consensus 113 -~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 -MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp -TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred -CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 5666666666655542222232 5555555555555666666555555432 2323333332222211 13555555
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 274 LKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP--DSLTYNMIFECLIKNKRVHEVEKFFHEM 351 (463)
Q Consensus 274 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~ 351 (463)
..+|++..+.. +-+...|..++..+.+.|++++|..+|++.+....+.| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555544432 22344444444444455555555555554333211222 2334444444444445555555555444
Q ss_pred HH
Q 012442 352 IK 353 (463)
Q Consensus 352 ~~ 353 (463)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=2.1e-12 Score=106.37 Aligned_cols=166 Identities=8% Similarity=0.030 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012442 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295 (463)
Q Consensus 216 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 295 (463)
+..+|..+...|.+.|++++|++.|++..+. .|++..+|..+...|.+.|++++|...+....... +.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA---DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHH
Confidence 5567777777777777777777777777654 66677777777777777777777777777776654 3345566666
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCC
Q 012442 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375 (463)
Q Consensus 296 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 375 (463)
...+...++++.|...+....... +.+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|+
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCC
Confidence 667777777777777777654432 2345566666777777777777777777777654 5566667777777777777
Q ss_pred HHHHHHHHHHHHH
Q 012442 376 PEIAIEIWNYILE 388 (463)
Q Consensus 376 ~~~a~~~~~~~~~ 388 (463)
+++|.+.|++..+
T Consensus 157 ~~~A~~~~~~al~ 169 (184)
T 3vtx_A 157 RDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777766
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=4.1e-13 Score=127.96 Aligned_cols=214 Identities=12% Similarity=0.075 Sum_probs=149.7
Q ss_pred cHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHH
Q 012442 198 QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNV-EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276 (463)
Q Consensus 198 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~ 276 (463)
.+++++..++......+.+...+..+...|...|++ ++|++.|++..+. .|++..+|..+...|...|++++|.+.
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL---EPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345555556555554455667777777777777777 7777777777654 565666777777777777777777777
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHc---------CCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc--------C
Q 012442 277 LRVMKGENCFPTLKFFSNALDILVKL---------NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKN--------K 339 (463)
Q Consensus 277 ~~~m~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~ 339 (463)
|++..+.. |+...+..+...|... |++++|...|++++... +.+...|..+...|... |
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 77777654 5566677777777777 77777777777755533 23466677777777777 7
Q ss_pred CHhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHH
Q 012442 340 RVHEVEKFFHEMIKNEWQ---PTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRR 416 (463)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 416 (463)
++++|.+.|++..+.. + .+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..++...|++++|.+
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888877753 3 477778888888888888888888888877753 2244567777777777777777776
Q ss_pred HHHH
Q 012442 417 FAEE 420 (463)
Q Consensus 417 ~~~~ 420 (463)
.+.+
T Consensus 314 ~~~~ 317 (474)
T 4abn_A 314 SKGK 317 (474)
T ss_dssp HTTT
T ss_pred Hhcc
Confidence 5544
No 66
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.52 E-value=9.2e-12 Score=117.88 Aligned_cols=304 Identities=11% Similarity=0.016 Sum_probs=205.7
Q ss_pred cCCc---hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCh
Q 012442 92 YDSP---SSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNG-----RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKY 163 (463)
Q Consensus 92 ~~~~---~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~ 163 (463)
.|++ ++|+.+|+.+.+. ++..+..+...+...+ ++++|...|+...+.+.++ .+..|...|...+..
T Consensus 48 ~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~ 122 (452)
T 3e4b_A 48 TRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN--TLIPLAMLYLQYPHS 122 (452)
T ss_dssp --------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHCGGG
T ss_pred cCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCCC
Confidence 4555 7888888877643 6777788887666655 7788999999888877654 566777777766554
Q ss_pred H---HHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc----HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC---CH
Q 012442 164 D---EAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ----TSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG---NV 233 (463)
Q Consensus 164 ~---~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~ 233 (463)
+ ++.+.+......| +...+..|...|... +. .+.+..+++....+ +...+..|...|.+.| +.
T Consensus 123 ~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~-~~~~~~~~~a~~~~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~ 195 (452)
T 3e4b_A 123 FPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ-GTYDQHLDDVERICKAALNT---TDICYVELATVYQKKQQPEQQ 195 (452)
T ss_dssp CTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH-TCGGGGHHHHHHHHHHHTTT---CTTHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC-CCcccCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcccH
Confidence 3 3455555555444 234555566666665 63 44444455544443 3338888999999999 99
Q ss_pred HHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHcc----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-H--HHcCCHh
Q 012442 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRG----KQVDEALKFLRVMKGENCFPTLKFFSNALDI-L--VKLNDST 306 (463)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~g~~~ 306 (463)
++|++.|+...+. | +.+...+..+...|... +++++|+..|++.. .| +...+..+... | ...++++
T Consensus 196 ~~A~~~~~~aa~~-g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 196 AELLKQMEAGVSR-G--TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHHHHHHHHHHHT-T--CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHH
T ss_pred HHHHHHHHHHHHC-C--CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHH
Confidence 9999999999875 3 33455557777777665 79999999999988 43 45566666666 4 5689999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-----CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhC----CCCHH
Q 012442 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK-----RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEPE 377 (463)
Q Consensus 307 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 377 (463)
+|...|++.. ..| +...+..|...|. .| ++++|.+.|++.. .| +...+..|...|.. ..+.+
T Consensus 269 ~A~~~~~~Aa-~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~ 339 (452)
T 3e4b_A 269 QMMKYLDNGR-AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQ 339 (452)
T ss_dssp HHHHHHHHHH-HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHH
T ss_pred HHHHHHHHHH-HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHH
Confidence 9999999954 344 6677777777776 55 9999999999988 54 67778888888876 44999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHHHHHCCC
Q 012442 378 IAIEIWNYILENGILPLEASANELLVGLRN----LGRLSDVRRFAEEMLNRRI 426 (463)
Q Consensus 378 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~ 426 (463)
+|.+.|++..+.|. ......|...|.. ..+.++|..+|+...+.|.
T Consensus 340 ~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 340 KALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999998774 3456666666664 4689999999999998885
No 67
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=1.7e-12 Score=123.01 Aligned_cols=308 Identities=10% Similarity=-0.015 Sum_probs=205.1
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-----
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRF---EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG----- 161 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----- 161 (463)
...|++++|.++|+.+.+. -+..++..+...|...|+. ++|...|+...+. +...+..+...+...|
T Consensus 14 ~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHH
T ss_pred HhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCc
Confidence 4568899999999887652 2445666777778788888 8999999988765 5556777777555555
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHH--
Q 012442 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANK-- 238 (463)
Q Consensus 162 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~-- 238 (463)
+.++|++.|++..+.|. ++ .+..|...|... +..+.+.+.++.+.. .-..+...+..+...|...+.++++..
T Consensus 89 ~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~-~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGE-GN--TLIPLAMLYLQY-PHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHC-GGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred CHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHH
Confidence 78999999999998763 33 666677777766 544443333333332 112245677788888888885555444
Q ss_pred --HHHHHHHhcCCCCchHhhHHHHHHHHHccC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc----CCHhHHH
Q 012442 239 --TFGEMVERFEWNPEHVLAYETFLITLIRGK---QVDEALKFLRVMKGENCFPTLKFFSNALDILVKL----NDSTHAV 309 (463)
Q Consensus 239 --~~~~~~~~~~~~p~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~ 309 (463)
+++..... +..++..|...|...| +.++|++.|++..+.| .++...+..+...|... +++++|.
T Consensus 165 ~~~~~~a~~~------~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 165 ERICKAALNT------TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp HHHHHHHTTT------CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred HHHHHHHHcC------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 44444322 3348889999999999 9999999999999988 45666666777777655 7999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHH-H--HHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCC-----CHHHHHH
Q 012442 310 QLWDIMMVFHGAFPDSLTYNMIFEC-L--IKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD-----EPEIAIE 381 (463)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~ 381 (463)
..|+... . -+...+..|... + ...+++++|.+.|++..+.| +...+..|...|. .| +.++|.+
T Consensus 238 ~~~~~aa--~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA--P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG--G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc--C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999953 2 345566666665 3 45889999999999999987 7778888888887 45 9999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHHHHHCCC
Q 012442 382 IWNYILENGILPLEASANELLVGLRN----LGRLSDVRRFAEEMLNRRI 426 (463)
Q Consensus 382 ~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~ 426 (463)
.|++.. .| +...+..|...|.. ..++++|.++|++..+.|.
T Consensus 309 ~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 309 HFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 999887 44 55677777777766 3499999999999887663
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=2e-12 Score=123.18 Aligned_cols=214 Identities=9% Similarity=-0.058 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHH
Q 012442 129 FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKY-DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLN 207 (463)
Q Consensus 129 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 207 (463)
+++++..+++.....+.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+...|... |++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~-g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKK-GDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 44555555554444444555555555666666666 66666666555442 23355555555555555 66666666666
Q ss_pred HhhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHcc--------CCH
Q 012442 208 RVKKIVDPDGDSFAILLEGWEKE---------GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG--------KQV 270 (463)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~--------~~~ 270 (463)
+..+. .|+...+..+...|... |++++|.+.|++..+. .|++...|..+...|... |++
T Consensus 162 ~al~~-~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH-CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT-CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh-CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 55542 23355555666666666 6677777777766554 555666666676666666 667
Q ss_pred HHHHHHHHHHhhCCCC---CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 012442 271 DEALKFLRVMKGENCF---PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347 (463)
Q Consensus 271 ~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 347 (463)
++|++.|++..+.. + -+...|..+..+|...|++++|...|+++.... +.+...+..+...+...|++++|.+.
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766643 2 356666677777777777777777777654433 22445566666666666777777665
Q ss_pred HHHH
Q 012442 348 FHEM 351 (463)
Q Consensus 348 ~~~~ 351 (463)
+.++
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 5554
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=3.2e-13 Score=121.22 Aligned_cols=241 Identities=15% Similarity=0.126 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcC------
Q 012442 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMH-------GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI------ 212 (463)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~------ 212 (463)
...++..+...+...|++++|..+|+++.+. .......++..+...+... |++++|..++++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHhC
Confidence 3556777777777777777777777777652 1122344455555666666 6666666666654431
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhC--
Q 012442 213 --VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF-----EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-- 283 (463)
Q Consensus 213 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-- 283 (463)
.+....++..+...|...|++++|.+.|++..+.. +-.|....++..+...+...|++++|.++|++..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 12223445555555555566666655555554421 112323344455555555555555555555554332
Q ss_pred ----CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-----
Q 012442 284 ----NCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN----- 354 (463)
Q Consensus 284 ----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----- 354 (463)
+..| ....++..+...|...|++++|.+.++++.+.
T Consensus 185 ~~~~~~~~-----------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 229 (311)
T 3nf1_A 185 TKLGPDDP-----------------------------------NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229 (311)
T ss_dssp HTSCTTCH-----------------------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCH-----------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 1011 11233444444555555555555555554431
Q ss_pred --CCCCC-------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012442 355 --EWQPT-------PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 355 --~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
...+. ...+..+...+...+.+.++...++...... +.+..++..+..+|.+.|++++|.+++++..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00111 1112222333334445555555555555422 22445677777788888888888888877654
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=9.3e-12 Score=115.48 Aligned_cols=232 Identities=9% Similarity=-0.008 Sum_probs=164.5
Q ss_pred HHHHHHccCCcHHHHHHHHHHhhcC---CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC----CCchHhhH
Q 012442 188 LLSAICRQENQTSRALEFLNRVKKI---VDP---DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEW----NPEHVLAY 257 (463)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~p~~~~~~ 257 (463)
....+... |++++|+..|++..+. .+. ...++..+...|...|++++|.+.+.+..+...- .+....++
T Consensus 109 ~g~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQ-REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHh-cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 33445566 8888888888887651 221 2467788888888899999998888877653111 12234578
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHh---cCC-CCCHHHH
Q 012442 258 ETFLITLIRGKQVDEALKFLRVMKGENCF-PT----LKFFSNALDILVKLNDSTHAVQLWDIMMVF---HGA-FPDSLTY 328 (463)
Q Consensus 258 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~ 328 (463)
+.+...|...|++++|...|++..+.... .+ ..++..+...|...|++++|...+++.... .+. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 88888899999999999998887643110 11 246788888899999999999999886442 122 2345678
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCCCC-hhhHHH
Q 012442 329 NMIFECLIKNKRVHEVEKFFHEMIKN----EWQPTPLNCATAITMLLDADE---PEIAIEIWNYILENGILPL-EASANE 400 (463)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~ 400 (463)
..+...|.+.|++++|...+++..+. +-+.....+..+...|...|+ +++|..++++. +..++ ...+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 88888899999999999999887753 112223335677888888898 66777776655 22222 346677
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Q 012442 401 LLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 401 li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
+...|...|++++|.+.+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999999999998764
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=2.7e-13 Score=121.71 Aligned_cols=174 Identities=13% Similarity=0.089 Sum_probs=138.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---
Q 012442 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED--------GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH--- 176 (463)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 176 (463)
..+.+..++..+...+...|++++|..+|+++.+. .+....++..+...|...|++++|.+.+++..+.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34455678889999999999999999999988773 2335678888999999999999999999988753
Q ss_pred ---C-CCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012442 177 ---G-VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKI--------VDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244 (463)
Q Consensus 177 ---g-~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (463)
+ ......++..+...+... |++++|..++++..+. .+....++..+...+...|++++|.++|++..
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 123456777888888888 9999999999887652 13345678889999999999999999999887
Q ss_pred Hhc-----CCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 012442 245 ERF-----EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 245 ~~~-----~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (463)
+.. +..|....++..+...|...|++++|...|+++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 631 22454566788899999999999999999998875
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=1.9e-11 Score=113.45 Aligned_cols=296 Identities=8% Similarity=-0.046 Sum_probs=209.4
Q ss_pred hccCCchHHHHHHHHhcC---CC--CCCHHHHHHHHHHH--HhCCChHHHH-----------HHHHHHHHcCCC-----C
Q 012442 90 LSYDSPSSAVDFFRWAGR---GQ--RLSPYAWNLMVDVL--GKNGRFEQMW-----------NAVRVMKEDGVL-----S 146 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~li~~~--~~~g~~~~a~-----------~~~~~m~~~~~~-----~ 146 (463)
...++.+.|..+++.+.. .. ..+...|-.++..- ...++++.+. +.++.+...... .
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 457899999999988765 33 33344444444332 1224444444 666666543221 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHccCCcHHHHHHHHHHhhc---CC----C
Q 012442 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMH----GVEQ-DVVAVNSLLSAICRQENQTSRALEFLNRVKK---IV----D 214 (463)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~----~ 214 (463)
...+......+...|++++|.+.|++..+. +-.+ ...++..+...+... |+++.|+..+++..+ .. +
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM-KQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCccchH
Confidence 112333667788999999999999999763 1111 346778888888888 999999999998765 11 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhC----CC-C
Q 012442 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERF---EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE----NC-F 286 (463)
Q Consensus 215 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~ 286 (463)
....+++.+...|...|++++|.+.|++..+.. +-.+....++..+...|...|++++|.+.|++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 124678889999999999999999999886531 111112347889999999999999999999998762 22 3
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCC---HhHHHHHHHHHHHCCCCCCH
Q 012442 287 PTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD---SLTYNMIFECLIKNKR---VHEVEKFFHEMIKNEWQPTP 360 (463)
Q Consensus 287 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~ 360 (463)
....++..+...|.+.|++++|...+++.+....-..+ ...+..+...|...|+ +++|..++++.. ..+...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~ 339 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLE 339 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHH
Confidence 34677899999999999999999999987553221112 2335667777888888 777777777662 112234
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 361 LNCATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 361 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
..+..+...|...|++++|.+.+++..+
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4677889999999999999999999875
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.45 E-value=8.9e-12 Score=102.39 Aligned_cols=162 Identities=13% Similarity=0.084 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 012442 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 194 (463)
.|..+...+...|++++|...|+++....+.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 444555555555666666666655555444455555555555555555665555555555432 2334444555555555
Q ss_pred cCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHH
Q 012442 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL 274 (463)
Q Consensus 195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~ 274 (463)
. |++++|.+.++++....+.+...+..+...+...|++++|.+.+++..+. .|.+..++..+...+...|++++|.
T Consensus 89 ~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 89 V-QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp H-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred h-cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHcCCHHHHH
Confidence 5 55555555555554433444455555555555555555555555555443 3334444555555555555555555
Q ss_pred HHHHHHh
Q 012442 275 KFLRVMK 281 (463)
Q Consensus 275 ~~~~~m~ 281 (463)
+.+++..
T Consensus 165 ~~~~~~~ 171 (186)
T 3as5_A 165 PHFKKAN 171 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.44 E-value=3.7e-09 Score=103.77 Aligned_cols=369 Identities=9% Similarity=-0.006 Sum_probs=227.9
Q ss_pred CHHHHHHHHHh--ccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHcCC--CCHHHHHH
Q 012442 80 TPDLVHEVLQL--SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGR---FEQMWNAVRVMKEDGV--LSLPTFAS 152 (463)
Q Consensus 80 ~~~~~~~~l~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~--~~~~~~~~ 152 (463)
+...+..++.. ..+..+.+..+|+.+...++.+...|...+..-.+.|+ ++.+..+|+......+ ++...|..
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~ 144 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLS 144 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 55556566552 24566677777777766667777777777777666666 7777777777666553 56666666
Q ss_pred HHHHHHhcCCh--------HHHHHHHHHHH-hCCC-Cc-CHHHHHHHHHHHHc---------cCCcHHHHHHHHHHhhcC
Q 012442 153 IFDSYCGAGKY--------DEAVMSFDVMS-MHGV-EQ-DVVAVNSLLSAICR---------QENQTSRALEFLNRVKKI 212 (463)
Q Consensus 153 li~~~~~~g~~--------~~A~~~~~~m~-~~g~-~~-~~~~~~~ll~~~~~---------~~~~~~~a~~~~~~~~~~ 212 (463)
.+....+.++. +.+.++|+..+ ..|. .+ +...|...+..... . ++++.+..+|+....
T Consensus 145 Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq-~~~~~~R~iy~raL~- 222 (679)
T 4e6h_A 145 YITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ-QRVQYIRKLYKTLLC- 222 (679)
T ss_dssp HHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH-hHHHHHHHHHHHHHh-
Confidence 66655554443 22335565544 2344 33 34455555543321 1 234445555555443
Q ss_pred CCCC--H-------------------------------------------------------------------------
Q 012442 213 VDPD--G------------------------------------------------------------------------- 217 (463)
Q Consensus 213 ~~~~--~------------------------------------------------------------------------- 217 (463)
+|.. .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 1110 1
Q ss_pred HHHHHHHHHHHhcC-------CHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHH-HHHHHHhhCCCCCCH
Q 012442 218 DSFAILLEGWEKEG-------NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEAL-KFLRVMKGENCFPTL 289 (463)
Q Consensus 218 ~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~~~~ 289 (463)
..|...+..--..+ ..+.+..+|++.... .|.+...|...+..+...|+.++|. ++|++.... ++.+.
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~ 378 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSA 378 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCH
Confidence 12222222111111 012334455555544 3434556766677777778888886 999988764 45566
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHhc---------CCCC------------CHHHHHHHHHHHHHcCCHhHHHHHH
Q 012442 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFH---------GAFP------------DSLTYNMIFECLIKNKRVHEVEKFF 348 (463)
Q Consensus 290 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~~li~~~~~~~~~~~a~~~~ 348 (463)
..|...+...-+.|+++.|.++|+.++... .. | ....|...+....+.|..+.|..+|
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD-PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc-CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667778888889999999999999865431 11 3 1346777787777888999999999
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 012442 349 HEMIKN-EWQPTPLNCATAITMLLDA-DEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRI 426 (463)
Q Consensus 349 ~~~~~~-~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 426 (463)
.+.++. + ......|...+..-.+. ++.+.|.++|+...+. ++-+...|...+......|+.+.|..+|++......
T Consensus 458 ~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 458 GKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 999876 3 22334444333333343 4589999999998875 444666777888888888999999999999887643
Q ss_pred cc--CHHHHHHHHHHHHHhcchhhhHHHHHHHHHh
Q 012442 427 LI--YEVTMHKLKKAFYNESRSMRDIFDSLERRCK 459 (463)
Q Consensus 427 ~~--~~~~~~~ll~~~~~~g~~a~~~~~~~~~~~~ 459 (463)
.+ ....|..+++.-.+.|+. +.+..+.+++.
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~--~~~~~v~~R~~ 568 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSL--NSVRTLEKRFF 568 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCS--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHH
Confidence 21 345788888888888888 55555555543
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.44 E-value=3.1e-10 Score=104.79 Aligned_cols=204 Identities=14% Similarity=0.009 Sum_probs=106.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCC--CchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCC----CCHH
Q 012442 220 FAILLEGWEKEGNVEEANKTFGEMVERF---EWN--PEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF----PTLK 290 (463)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~--p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~ 290 (463)
+..+...+...|++++|.+.+++..+.. +.. |.....+..+...+...|++++|...+++....... ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 3445555556666666666665554321 111 222334455555666666666666666665432211 1123
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHHcCCHhHHHHHHHHHHHCCCCCC---HHH
Q 012442 291 FFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN-----MIFECLIKNKRVHEVEKFFHEMIKNEWQPT---PLN 362 (463)
Q Consensus 291 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 362 (463)
++..+...+...|++++|...+++.............+. ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 455566666666777777776666433211111101111 122335566777777777766654321111 223
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012442 363 CATAITMLLDADEPEIAIEIWNYILEN----GILPLE-ASANELLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 363 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
+..+...+...|++++|...+++..+. |..++. ..+..+..++...|+.++|...+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666677777777777777666532 211122 2444555667777777777777776543
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=7.9e-11 Score=108.97 Aligned_cols=309 Identities=8% Similarity=-0.058 Sum_probs=199.8
Q ss_pred CCHHHHHHHHHHH--HhCCChHHHHHHHHHHHHcCC---CC--HHHHHHHHHH--HHhcCChHHHH---------HHHHH
Q 012442 111 LSPYAWNLMVDVL--GKNGRFEQMWNAVRVMKEDGV---LS--LPTFASIFDS--YCGAGKYDEAV---------MSFDV 172 (463)
Q Consensus 111 ~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~---~~--~~~~~~li~~--~~~~g~~~~A~---------~~~~~ 172 (463)
++..+-+.|-..| .+.+++++|..+++++..... .+ ...|-.++.. ..-.+.++.+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4444555555555 778888888888888765321 22 2233333332 11112222233 55665
Q ss_pred HHhCCCCcCH-H---HHHHHHHHHHccCCcHHHHHHHHHHhhcC--CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012442 173 MSMHGVEQDV-V---AVNSLLSAICRQENQTSRALEFLNRVKKI--VDP----DGDSFAILLEGWEKEGNVEEANKTFGE 242 (463)
Q Consensus 173 m~~~g~~~~~-~---~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 242 (463)
+.....+.+. . .+......+... |++++|+..|++..+. ..+ ...++..+...|...|+++.|...+++
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQ-KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 5432111111 1 122223334556 9999999999987651 112 245778888999999999999999888
Q ss_pred HHHhcCC----CCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHH
Q 012442 243 MVERFEW----NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE----NCFP-TLKFFSNALDILVKLNDSTHAVQLWD 313 (463)
Q Consensus 243 ~~~~~~~----~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~ 313 (463)
..+...- .+....+++.+...|...|++++|.+.|++..+. +..+ ...++..+..+|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7653211 1123557888899999999999999999887653 2111 13467788888999999999999998
Q ss_pred HHHHhc---CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHhCCCC---HHHHHHHH
Q 012442 314 IMMVFH---GAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE----WQPTPLNCATAITMLLDADE---PEIAIEIW 383 (463)
Q Consensus 314 ~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~ 383 (463)
+..... +.+....++..+...|.+.|++++|...+++..+.. -+.....+..+...|...++ +.+|..++
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 864411 222236678888889999999999999999988742 12223456666677778888 67777766
Q ss_pred HHHHHcCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012442 384 NYILENGILPL-EASANELLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 384 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
++ .+..++ ...+..+...|...|++++|.+.|++..+
T Consensus 327 ~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 65 222222 23566788899999999999999988764
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.43 E-value=7.1e-12 Score=124.34 Aligned_cols=168 Identities=15% Similarity=0.102 Sum_probs=152.3
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012442 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189 (463)
Q Consensus 110 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 189 (463)
|.++.+|+.|...|.+.|++++|++.|++..+..+.+..+|..+..+|.+.|++++|++.|++.++.. +-+...|..+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45578899999999999999999999999999988889999999999999999999999999998764 44578899999
Q ss_pred HHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCC
Q 012442 190 SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269 (463)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~ 269 (463)
.++.+. |++++|++.|++..+..+-+...|+.+..+|.+.|++++|++.|++..+. .|++..+|..+...+...|+
T Consensus 85 ~~l~~~-g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 85 NTLKEM-QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhccc
Confidence 999999 99999999999988866778899999999999999999999999999775 78888899999999999999
Q ss_pred HHHHHHHHHHHhh
Q 012442 270 VDEALKFLRVMKG 282 (463)
Q Consensus 270 ~~~a~~~~~~m~~ 282 (463)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=5.3e-11 Score=97.66 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=86.5
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHH
Q 012442 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264 (463)
Q Consensus 185 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~ 264 (463)
|..+...+... |++++|...++++.+..+.+..++..+...+...|++++|.+.++++.+. .|.+...+..+...+
T Consensus 11 ~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 11 YRDKGISHAKA-GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHH
Confidence 33344444444 55555555555554433444555555555555555555555555555443 343444555555555
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 012442 265 IRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEV 344 (463)
Q Consensus 265 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 344 (463)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555555442 2344555555555556666666666665543332 22345555556666666666666
Q ss_pred HHHHHHHHH
Q 012442 345 EKFFHEMIK 353 (463)
Q Consensus 345 ~~~~~~~~~ 353 (463)
.+.++++.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=3.1e-10 Score=104.98 Aligned_cols=295 Identities=9% Similarity=-0.051 Sum_probs=204.4
Q ss_pred hccCCchHHHHHHHHhcC---CC--CCCHHHHHHHHHHH--HhCCChHHHH---------HHHHHHHHcCCC-----CHH
Q 012442 90 LSYDSPSSAVDFFRWAGR---GQ--RLSPYAWNLMVDVL--GKNGRFEQMW---------NAVRVMKEDGVL-----SLP 148 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~li~~~--~~~g~~~~a~---------~~~~~m~~~~~~-----~~~ 148 (463)
....+.+.|..+++.+.. .. ..+...|-.++..- .-.+.+..+. +.++.+.....+ ...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~ 102 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY 102 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence 446889999999987654 22 23344445554431 1112333333 666665443221 111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-Cc----CHHHHHHHHHHHHccCCcHHHHHHHHHHhhc---CCC----CC
Q 012442 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGV-EQ----DVVAVNSLLSAICRQENQTSRALEFLNRVKK---IVD----PD 216 (463)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~----~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~~----~~ 216 (463)
.+......+...|++++|+..|++..+..- .+ ...++..+...|... |+++.|...+++..+ ... ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM-KQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 344456667889999999999999875421 12 245677788888888 999999999998655 111 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhh-----CCCCCC
Q 012442 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERF---EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG-----ENCFPT 288 (463)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~ 288 (463)
..+++.+..+|...|++++|.+.|++..+.. +-.+....++..+...|...|++++|.+.|++..+ .. +..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLL 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhH
Confidence 5678889999999999999999999876531 11121345788899999999999999999999877 43 333
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCC--C-CHHHHHHHHHHHHHcCC---HhHHHHHHHHHHHCCCCCCHHH
Q 012442 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAF--P-DSLTYNMIFECLIKNKR---VHEVEKFFHEMIKNEWQPTPLN 362 (463)
Q Consensus 289 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~ 362 (463)
..++..+...|.+.|++++|...+++......-. + ....+..+...|...++ +++|..++++.. ..+.....
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~ 338 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHH
Confidence 6788889999999999999999999976654332 2 23345556566667777 777777777621 11222345
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 363 CATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 363 ~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
+..+...|...|++++|.+.|++..+
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67888999999999999999998875
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=1.3e-10 Score=99.25 Aligned_cols=197 Identities=11% Similarity=0.003 Sum_probs=153.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 012442 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188 (463)
Q Consensus 110 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 188 (463)
+.|+..|......+...|++++|+..|+...+..+ .+...+..+..++...|++++|++.|++..+.. +.+...|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 35678888899999999999999999999988887 777778889999999999999999999998764 3356678888
Q ss_pred HHHHHccCCcHHHHHHHHHHhhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc--hHhhHHH
Q 012442 189 LSAICRQENQTSRALEFLNRVKKIVDPDG-------DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE--HVLAYET 259 (463)
Q Consensus 189 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~ 259 (463)
...+... |++++|+..+++..+..+.+. .+|..+...+...|++++|.+.|++..+ ..|+ +..+|..
T Consensus 83 ~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDM-KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 8888888 999999999999887555666 5688888888999999999999999865 4887 6778888
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhc
Q 012442 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFH 319 (463)
Q Consensus 260 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 319 (463)
+...|...| ..+++++...+ ..+...|.... ....+.+++|...+++.....
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 888886544 44455555543 23344444433 334566899999999876643
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=4.6e-11 Score=118.55 Aligned_cols=166 Identities=16% Similarity=0.094 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012442 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295 (463)
Q Consensus 216 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 295 (463)
+..+|+.|...|.+.|++++|++.|++..+. .|++..+|+.+...|.+.|++++|++.|++..+.. +-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4556666666667777777777777666554 56566666667777777777777777776666643 2235566666
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCC
Q 012442 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE 375 (463)
Q Consensus 296 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 375 (463)
..+|.+.|++++|.+.|++++... +-+...|+.+...|.+.|++++|++.|++.++.. +-+...+..+..+|...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhccc
Confidence 666777777777777776654432 1245566666667777777777777777766654 4456666677777777777
Q ss_pred HHHHHHHHHHHHH
Q 012442 376 PEIAIEIWNYILE 388 (463)
Q Consensus 376 ~~~a~~~~~~~~~ 388 (463)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777666666553
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=6.8e-10 Score=102.44 Aligned_cols=271 Identities=11% Similarity=0.009 Sum_probs=168.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CcC----HHHHH
Q 012442 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLS-L----PTFASIFDSYCGAGKYDEAVMSFDVMSMHGV-EQD----VVAVN 186 (463)
Q Consensus 117 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~ 186 (463)
......+...|++++|...+++.....+.+ . .+++.+...+...|++++|.+.+++.....- ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455666778888888777766654322 2 2455666677777888888887777653210 111 12244
Q ss_pred HHHHHHHccCCcHHHHHHHHHHhhc-----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCC-chHhh
Q 012442 187 SLLSAICRQENQTSRALEFLNRVKK-----IVD--P-DGDSFAILLEGWEKEGNVEEANKTFGEMVERFE-WNP-EHVLA 256 (463)
Q Consensus 187 ~ll~~~~~~~~~~~~a~~~~~~~~~-----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~p-~~~~~ 256 (463)
.+...+... |++++|...+++... +.. | ....+..+...+...|++++|...+++...... ..+ ....+
T Consensus 98 ~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 98 QQSEILFAQ-GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 555666667 888888888877544 111 2 234566677788888888888888887765311 011 12345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--HHHHH----HHHHHHHHcCCHhHHHHHHHHHHHhcCCC--CCHHHH
Q 012442 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPT--LKFFS----NALDILVKLNDSTHAVQLWDIMMVFHGAF--PDSLTY 328 (463)
Q Consensus 257 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~ 328 (463)
+..+...+...|++++|...+++.....-.++ ..... ..+..+...|++++|...++......... .....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 67777788888888888888887754311111 11111 23344678888888888888742211100 112345
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 329 NMIFECLIKNKRVHEVEKFFHEMIKN----EWQPTP-LNCATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66777888889999998888887543 211122 2556667778888999999988888775
No 83
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=7.2e-09 Score=101.70 Aligned_cols=355 Identities=9% Similarity=0.002 Sum_probs=222.4
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC---hHHHHHHHH
Q 012442 95 PSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK---YDEAVMSFD 171 (463)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~ 171 (463)
..+.+..|+......+.|...|..++..+.+.+.++.+..+|+.+...-+.....|...+..-.+.|+ ++.+.++|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 44455555555556688999999999999999999999999999999988889999999999999999 999999999
Q ss_pred HHHhCC-CCcCHHHHHHHHHHHHccCCcH--------HHHHHHHHHhhc--CC-CC-CHHHHHHHHHHHH---------h
Q 012442 172 VMSMHG-VEQDVVAVNSLLSAICRQENQT--------SRALEFLNRVKK--IV-DP-DGDSFAILLEGWE---------K 229 (463)
Q Consensus 172 ~m~~~g-~~~~~~~~~~ll~~~~~~~~~~--------~~a~~~~~~~~~--~~-~~-~~~~~~~l~~~~~---------~ 229 (463)
+.+... ..|+...|...+....+. ++. +.+.++|+.... |. .+ +...|...+.... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~-~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKK-NDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHH-SCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHh-cccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 998763 238888998888766555 432 445578887655 55 44 4578888876643 2
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCchHhhHH---HHHHHHH----------ccCCHHHHHH---------------------
Q 012442 230 EGNVEEANKTFGEMVERFEWNPEHVLAYE---TFLITLI----------RGKQVDEALK--------------------- 275 (463)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~---~li~~~~----------~~~~~~~a~~--------------------- 275 (463)
.++++.+.++|+..... .... -..+|. .+...+. ...+++.|..
T Consensus 207 q~~~~~~R~iy~raL~i-P~~~-~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQ-PMDC-LESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHTTS-CCSS-HHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HhHHHHHHHHHHHHHhC-ccHH-HHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 34567788888877641 1111 112221 1111100 0011122222
Q ss_pred ----------------------------------------------HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 012442 276 ----------------------------------------------FLRVMKGENCFPTLKFFSNALDILVKLNDSTHAV 309 (463)
Q Consensus 276 ----------------------------------------------~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 309 (463)
+|++.... ++-....|...+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 22222222 1223334444445555667777775
Q ss_pred -HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC---------CCCC------------HHHHHHHH
Q 012442 310 -QLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE---------WQPT------------PLNCATAI 367 (463)
Q Consensus 310 -~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~li 367 (463)
++|+..+.. ++.+...|...+...-+.|++++|.++|+++++.. -.|+ ..+|...+
T Consensus 364 r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 364 TKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 788775442 33455666677777777888888888888877531 0121 23566667
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcC-CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 368 TMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNL-GRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 368 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
....+.|+.+.|..+|.++.+.-.......|...+..-.+. ++.+.|.++|+...+. ..-+...+..++......|+.
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCH
Confidence 77677778888888888887641111223443333333333 4478888888887765 333555566777777777776
Q ss_pred --hhhHHHHHHH
Q 012442 447 --MRDIFDSLER 456 (463)
Q Consensus 447 --a~~~~~~~~~ 456 (463)
|+.+++..+.
T Consensus 521 ~~AR~lferal~ 532 (679)
T 4e6h_A 521 SQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 5555555544
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.33 E-value=2.9e-11 Score=106.64 Aligned_cols=206 Identities=10% Similarity=0.063 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhC------C-
Q 012442 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERF-----EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE------N- 284 (463)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~- 284 (463)
..++..+...|...|++++|.+.|++..+.. +-.|....++..+...|...|++++|.+.|++..+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 4556666666666666666666666665421 223434556666777777777777777777766543 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHh------cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC----
Q 012442 285 CFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF------HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN---- 354 (463)
Q Consensus 285 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---- 354 (463)
.+....++..+...|...|++++|...+++++.. ...+....++..+...|...|++++|..+++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1122445666677777777777777777775443 111123456677777777788888888888777653
Q ss_pred ---CC-CCCHHHHHHHHHHHhCCCCHHHHHH------HHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012442 355 ---EW-QPTPLNCATAITMLLDADEPEIAIE------IWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 355 ---~~-~~~~~~~~~li~~~~~~g~~~~a~~------~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
.. ......+..+...+...+....+.. .++.... .......++..+...|...|++++|..++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 1222233333333333333222222 2111110 1112234677788889999999999999988764
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=6.4e-10 Score=94.84 Aligned_cols=209 Identities=8% Similarity=-0.016 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 012442 145 LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224 (463)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 224 (463)
.++..+......+.+.|++++|++.|++..+..-.++...+..+..++... |++++|+..|++..+..+.+..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI-KKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 356788899999999999999999999998875337778888788888888 9999999999998886677888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCchH-------hhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC---HHHHHH
Q 012442 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHV-------LAYETFLITLIRGKQVDEALKFLRVMKGENCFPT---LKFFSN 294 (463)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ 294 (463)
.+|...|++++|.+.|++..+. .|++. ..|..+...+...|++++|++.|++..+.. |+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHH
Confidence 9999999999999999999876 66555 568888899999999999999999998864 54 456777
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012442 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITM 369 (463)
Q Consensus 295 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 369 (463)
+..+|...|+ .+++.+ ...+ ..+...|..... ...+.+++|...|++..+.. +-+..+...+...
T Consensus 159 l~~~~~~~~~-----~~~~~a-~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~i 223 (228)
T 4i17_A 159 LGVLFYNNGA-----DVLRKA-TPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHH-GGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHH-Hhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHH
Confidence 7777765543 334442 2221 223444544432 34567899999999999875 4455555544433
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=6e-11 Score=104.60 Aligned_cols=118 Identities=14% Similarity=0.054 Sum_probs=56.6
Q ss_pred ccCCchHHHHHHHHhcC--------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--------CCCHHHHHHHH
Q 012442 91 SYDSPSSAVDFFRWAGR--------GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--------VLSLPTFASIF 154 (463)
Q Consensus 91 ~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~~~~~~~~li 154 (463)
..++++.|+.+|+.+.+ ..+....++..+...|...|++++|+..|++..+.. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34566666666655443 112234455555555555566666665555544331 11234455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhC------C-CCcCHHHHHHHHHHHHccCCcHHHHHHHHHHh
Q 012442 155 DSYCGAGKYDEAVMSFDVMSMH------G-VEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209 (463)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 209 (463)
..|...|++++|.+.|++.... . .+....++..+...+... |++++|..++++.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 153 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ-GKAEEVEYYYRRA 153 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 5555555555555555555432 0 011233344444444444 4444444444443
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.21 E-value=1e-09 Score=84.61 Aligned_cols=129 Identities=19% Similarity=0.273 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 012442 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 194 (463)
.|..+...+...|++++|..+|+++...++.+...+..+...+...|++++|.+.++++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 455555666666666666666666655555555556666666666666666666666655443 2334445555555555
Q ss_pred cCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012442 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
. |++++|.++++++....+.+..++..+...+.+.|++++|.+.++++.+
T Consensus 82 ~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 Q-GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp T-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred h-cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5 5555555555555443334445555555555555555555555555543
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.21 E-value=1.1e-09 Score=95.47 Aligned_cols=136 Identities=12% Similarity=0.022 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-C-cCHHH
Q 012442 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV-E-QDVVA 184 (463)
Q Consensus 110 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-~~~~~ 184 (463)
+.+...+-.+...+.+.|++++|...|+.+....+.+ ..++..+..+|.+.|++++|+..|++..+... . .....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4455666666677777777777777777777666544 56677777777777777777777777765421 1 11334
Q ss_pred HHHHHHHHHc--------cCCcHHHHHHHHHHhhcCCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHH
Q 012442 185 VNSLLSAICR--------QENQTSRALEFLNRVKKIVDPDGDSF-----------------AILLEGWEKEGNVEEANKT 239 (463)
Q Consensus 185 ~~~ll~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~a~~~ 239 (463)
+..+..++.. . |++++|+..|+++.+..+.+.... ..+...|.+.|++++|...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQ-TDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCC-HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccc-hhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 4455555555 5 777777777777655333333332 3344455555555555555
Q ss_pred HHHHHHh
Q 012442 240 FGEMVER 246 (463)
Q Consensus 240 ~~~~~~~ 246 (463)
|+++.+.
T Consensus 171 ~~~~l~~ 177 (261)
T 3qky_A 171 YEAVFDA 177 (261)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=1.2e-09 Score=96.95 Aligned_cols=126 Identities=13% Similarity=-0.025 Sum_probs=53.5
Q ss_pred HHHhcCChHHHHHHHHHHHhC----CCCcC-HHHHHHHHHHHHccCCcHHHHHHHHHHhhcCC----CC--CHHHHHHHH
Q 012442 156 SYCGAGKYDEAVMSFDVMSMH----GVEQD-VVAVNSLLSAICRQENQTSRALEFLNRVKKIV----DP--DGDSFAILL 224 (463)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~l~ 224 (463)
.|...|++++|.+.|++..+. |-.++ ..+|+.+..+|... |++++|+..|++..... .+ -..+++.+.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG-GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555566655555554421 11111 23444445555555 55555555554433200 00 022344445
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHhcCCCC---chHhhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 012442 225 EGWEKE-GNVEEANKTFGEMVERFEWNP---EHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 225 ~~~~~~-g~~~~a~~~~~~~~~~~~~~p---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (463)
..|... |++++|+..|++..+...-.. ....+++.+...+...|++++|+..|++..+
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555553 555555555554443200000 0012344444444444555555555544444
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.19 E-value=2.4e-10 Score=113.80 Aligned_cols=171 Identities=17% Similarity=0.020 Sum_probs=87.4
Q ss_pred hccCCchHHHHHHHHhc--------CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 012442 90 LSYDSPSSAVDFFRWAG--------RGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG 161 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g 161 (463)
...+++++|++.|+.+. ...+.+...|..+...+.+.|++++|++.|++..+.++.+...|..+..++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 34455555555555554 3334445555555555555555555555555555555555555555555555555
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012442 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241 (463)
Q Consensus 162 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (463)
++++|++.|++..+.. +-+...|..+..++.+. |++++ ++.|++..+..+.+...|..+..++.+.|++++|.+.|+
T Consensus 482 ~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTF-PGELAPKLALAATAELA-GNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc-CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555432 22334444455555555 55555 555555444334444555555555555555555555555
Q ss_pred HHHHhcCCCCchHhhHHHHHHHHHc
Q 012442 242 EMVERFEWNPEHVLAYETFLITLIR 266 (463)
Q Consensus 242 ~~~~~~~~~p~~~~~~~~li~~~~~ 266 (463)
+..+ +.|++..+|..+..++..
T Consensus 559 ~al~---l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 559 EVPP---TSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp TSCT---TSTTHHHHHHHHHHHTC-
T ss_pred hhcc---cCcccHHHHHHHHHHHHc
Confidence 5432 244444445444444444
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=2.1e-09 Score=82.76 Aligned_cols=129 Identities=18% Similarity=0.280 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 012442 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228 (463)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (463)
.|..+...+...|++++|.++++++.+.+ +.+...+..+...+... |++++|..+++++....+.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 35556666666677777777776666543 33455555566666666 66666666666665544445556666666666
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 012442 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (463)
..|++++|.++++++.+. .|.+...+..+...+...|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666666553 343445556666666666666666666666554
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.15 E-value=1.4e-09 Score=96.34 Aligned_cols=173 Identities=10% Similarity=-0.037 Sum_probs=121.9
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH
Q 012442 103 RWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182 (463)
Q Consensus 103 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 182 (463)
+++....+.+...+..+...+.+.|++++|...|++..+..+.+...+..+...+.+.|++++|...++++... .|+.
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~ 184 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDT 184 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSH
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcch
Confidence 33333335666677778888888888888888888888887777888888888888888888888888877654 4554
Q ss_pred HHHHHHHHH-HHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch--HhhHHH
Q 012442 183 VAVNSLLSA-ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH--VLAYET 259 (463)
Q Consensus 183 ~~~~~ll~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~~ 259 (463)
......... +... ++.+.|...+++.....+.+...+..+...+...|++++|.+.|.++.+. .|++ ...+..
T Consensus 185 ~~~~~~~~~~l~~~-~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~ 260 (287)
T 3qou_A 185 RYQGLVAQIELLXQ-AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXT 260 (287)
T ss_dssp HHHHHHHHHHHHHH-HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHH
T ss_pred HHHHHHHHHHHHhh-cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHH
Confidence 433333322 4444 66667777777766656667777777777777778888887777777765 4543 556777
Q ss_pred HHHHHHccCCHHHHHHHHHHHh
Q 012442 260 FLITLIRGKQVDEALKFLRVMK 281 (463)
Q Consensus 260 li~~~~~~~~~~~a~~~~~~m~ 281 (463)
++..+...|+.++|...|++..
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHH
Confidence 7777777777777777776543
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=4e-08 Score=85.79 Aligned_cols=180 Identities=9% Similarity=0.055 Sum_probs=89.3
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012442 166 AVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIV--DPDGDSFAILLEGWEKEGNVEEANKTFGEM 243 (463)
Q Consensus 166 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 243 (463)
|+..|++....+ .++..++..+..++... |++++|++++.+..... .-+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~-g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAIL-GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555555443 34444444555556665 66666666666653322 234555556666666666666666666666
Q ss_pred HHhcCCCCc----hHhhHHHHHHH--HHc--cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 244 VERFEWNPE----HVLAYETFLIT--LIR--GKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315 (463)
Q Consensus 244 ~~~~~~~p~----~~~~~~~li~~--~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 315 (463)
.+. .|+ +..+...+..+ ... .+++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 543 331 11233333333 221 225666666666665432 33223333333566666666666666543
Q ss_pred HHhc----C----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 012442 316 MVFH----G----AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKN 354 (463)
Q Consensus 316 ~~~~----~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 354 (463)
.... . -+-+..+...+|......|+ +|.++++++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 2211 0 01234444333333333444 555666666554
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=3.6e-09 Score=92.27 Aligned_cols=99 Identities=18% Similarity=0.122 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCC---CCHHH
Q 012442 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD---VVAVNSLLSAICRQENQTSRALEFLNRVKKIVD---PDGDS 219 (463)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ 219 (463)
+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+. |++++|+..|+...+..+ .....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQN-KEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34445555555555555555555555555432 111 33444444555555 555555555555444211 12334
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHh
Q 012442 220 FAILLEGWEK--------EGNVEEANKTFGEMVER 246 (463)
Q Consensus 220 ~~~l~~~~~~--------~g~~~~a~~~~~~~~~~ 246 (463)
+..+..++.. .|++++|...|+++.+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 4445555555 55555555555555443
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.13 E-value=7.8e-10 Score=110.17 Aligned_cols=170 Identities=13% Similarity=-0.033 Sum_probs=96.4
Q ss_pred HhCCChHHHHHHHHHHH--------HcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 124 GKNGRFEQMWNAVRVMK--------EDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 124 ~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
...|++++|++.|++.. +..+.+...+..+...+.+.|++++|++.|++..+.. +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45566666666666665 4444455556666666666666666666666665442 33445555555555655
Q ss_pred CCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHH
Q 012442 196 ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275 (463)
Q Consensus 196 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~ 275 (463)
|++++|+..|++..+..+.+...|..+..+|.+.|++++ .+.|++..+. .|++..+|..+...+.+.|++++|++
T Consensus 481 -g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 -GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp -TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666555444455566666666666666666 6666665543 45555566666666666666666666
Q ss_pred HHHHHhhCCCCCC-HHHHHHHHHHHHH
Q 012442 276 FLRVMKGENCFPT-LKFFSNALDILVK 301 (463)
Q Consensus 276 ~~~~m~~~~~~~~-~~~~~~ll~~~~~ 301 (463)
.|++..+.+ |+ ...+..+..++..
T Consensus 556 ~~~~al~l~--P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 556 TLDEVPPTS--RHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHTSCTTS--TTHHHHHHHHHHHTC-
T ss_pred HHHhhcccC--cccHHHHHHHHHHHHc
Confidence 666555543 33 3344444444433
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=4.4e-09 Score=93.36 Aligned_cols=238 Identities=11% Similarity=0.009 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC--CcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012442 164 DEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE--NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFG 241 (463)
Q Consensus 164 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (463)
.+|.+++.+..+. ++++...| .+ .+.+ +++++|...|++. ...|...|++++|.+.|.
T Consensus 2 ~~a~~~~~~a~k~-~~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 2 SDPVELLKRAEKK-GVPSSGFM-KL----FSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CCHHHHHHHHHHH-SSCCCTHH-HH----HSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHH
T ss_pred CcHHHHHHHHHHH-hCcCCCcc-hh----cCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHH
Confidence 3566777776654 13222222 22 2331 3588998888876 456788999999999998
Q ss_pred HHHHh---cCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHc-CCHhHHHHHH
Q 012442 242 EMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF-PT----LKFFSNALDILVKL-NDSTHAVQLW 312 (463)
Q Consensus 242 ~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~-g~~~~a~~~~ 312 (463)
+..+- .+-.+....+|+.+...|...|++++|+..|++..+.... .+ ..++..+...|... |++++|...|
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 87653 1212212568999999999999999999999988653211 01 35788889999996 9999999999
Q ss_pred HHHHHhcCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhCCCCHHHHHHH
Q 012442 313 DIMMVFHGAFPD----SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP------LNCATAITMLLDADEPEIAIEI 382 (463)
Q Consensus 313 ~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~ 382 (463)
++.+....-..+ ..+++.+...+.+.|++++|...|++..+....... ..|..+..++...|++++|...
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 987553321111 356888899999999999999999999986422221 1567788889999999999999
Q ss_pred HHHHHHcCCCCCh------hhHHHHHHHHH--cCCCHHHHHHHHHHHHH
Q 012442 383 WNYILENGILPLE------ASANELLVGLR--NLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 383 ~~~~~~~~~~p~~------~~~~~li~~~~--~~g~~~~a~~~~~~m~~ 423 (463)
|++..+. .|+. ..+..++.++. ..+++++|+..|+++..
T Consensus 222 ~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 222 LQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 9998763 3321 13344556664 45678888888877643
No 97
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.11 E-value=4.5e-07 Score=86.32 Aligned_cols=358 Identities=9% Similarity=0.001 Sum_probs=224.7
Q ss_pred CHHHHHHHHH-hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHc-C--CCCHHHHHHHH
Q 012442 80 TPDLVHEVLQ-LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGR-FEQMWNAVRVMKED-G--VLSLPTFASIF 154 (463)
Q Consensus 80 ~~~~~~~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-~--~~~~~~~~~li 154 (463)
-...|...+. .-.++.+.+..+|+.+... .|+...|...+....+.+. .+....+|+..... | +.+...|...+
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~~-~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKK-SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 3445666655 2238899999999988864 4699999999999888764 45677788876654 3 45778888888
Q ss_pred HHHH----hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-------------ccCCcHHHHHHHHHHhhcCCC-CC
Q 012442 155 DSYC----GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC-------------RQENQTSRALEFLNRVKKIVD-PD 216 (463)
Q Consensus 155 ~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~-------------~~~~~~~~a~~~~~~~~~~~~-~~ 216 (463)
..+. ..|+.+.+.++|+..+......-...|......-. .. +.+..|..+++.+....+ .+
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~-~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL-PIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh-HHHHHHHHHHHHHHHHHhhcc
Confidence 8765 34678899999999987432211222222211110 01 233444555555443111 24
Q ss_pred HHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 012442 217 GDSFAILLEGWEKEG--N-----VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289 (463)
Q Consensus 217 ~~~~~~l~~~~~~~g--~-----~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 289 (463)
...|...+..-...+ - .+.+..+|+++... .|.+...|...+..+.+.|+.++|..+|++.... +.+.
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~ 246 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGM 246 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSS
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcH
Confidence 456666555533221 1 34577899998875 3546678988889899999999999999999887 3333
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHhcC--------C---CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 012442 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHG--------A---FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358 (463)
Q Consensus 290 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--------~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (463)
..+. .|....+.++. ++.+....- . ......|...+....+.+..+.|..+|++. +.. ..
T Consensus 247 ~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~ 317 (493)
T 2uy1_A 247 FLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GV 317 (493)
T ss_dssp HHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CC
T ss_pred HHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CC
Confidence 2222 23332222222 222211110 0 011245667777777788899999999999 322 23
Q ss_pred CHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 012442 359 TPLNCATAITMLLD-ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLK 437 (463)
Q Consensus 359 ~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll 437 (463)
+...|......-.. .++.+.|..+|+...+.. .-+...|...++...+.|+.+.|..+|+++. .....|...+
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~ 391 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMI 391 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 44555432222222 236999999999998753 2245567778888888999999999999972 2467788887
Q ss_pred HHHHHhcch--hhhHHHHHHHHHh
Q 012442 438 KAFYNESRS--MRDIFDSLERRCK 459 (463)
Q Consensus 438 ~~~~~~g~~--a~~~~~~~~~~~~ 459 (463)
..=...|+. +++++++.++.++
T Consensus 392 ~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 392 EYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhc
Confidence 777778887 4455666555554
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.10 E-value=5.3e-09 Score=87.71 Aligned_cols=74 Identities=12% Similarity=0.093 Sum_probs=34.5
Q ss_pred HHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHH
Q 012442 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265 (463)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~ 265 (463)
+..++.+. |++++|+..|++..+..+.+...+..+..++...|++++|.+.|++..+. .|++..+|..+...|.
T Consensus 60 lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKN-RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHH
Confidence 33444444 45555555554444433344444444555555555555555555544433 4444444444444443
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=8.9e-09 Score=87.52 Aligned_cols=177 Identities=7% Similarity=-0.031 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHH----HH
Q 012442 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV----AV 185 (463)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~ 185 (463)
...+..+...+.+.|++++|+..|+.+....+.+ ...+..+..++.+.|++++|+..|+++.+.. |+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 4455556666777777777777777777655422 3566667777777777777777777776542 3211 22
Q ss_pred HHHHHHHHc------------------cCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 012442 186 NSLLSAICR------------------QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247 (463)
Q Consensus 186 ~~ll~~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 247 (463)
..+..++.. . |++++|+..|+++.+..+-+...+..... ...+...
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~P~~~~a~~a~~~--------------l~~~~~~- 145 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDP-QQARAAFSDFSKLVRGYPNSQYTTDATKR--------------LVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHHC--------------CC-HHHHHHHHHHHHHHTTCTTCTTHHHHHHH--------------HHHHHHH-
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCc-HHHHHHHHHHHHHHHHCcCChhHHHHHHH--------------HHHHHHH-
Confidence 223333322 3 56666777776666544444333321110 0000000
Q ss_pred CCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC-H---HHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT-L---KFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 248 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~---~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
.......+...|.+.|++++|...|+++.+.. |+ . ..+..+..+|.+.|+.++|.+.++.
T Consensus 146 -----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 146 -----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp -----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 00011234455556666666666666665542 22 1 3455556666666666666666665
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.08 E-value=1.3e-07 Score=83.48 Aligned_cols=219 Identities=7% Similarity=-0.023 Sum_probs=161.9
Q ss_pred cCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHcCCCCHHHHHHHHHHH----Hhc---CC
Q 012442 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNG--RFEQMWNAVRVMKEDGVLSLPTFASIFDSY----CGA---GK 162 (463)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~li~~~----~~~---g~ 162 (463)
....++|+.+++.+....+-+..+|+.-..++...| ++++++++++.+...++.+..+|+.--..+ ... ++
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 46 EEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 345568888888888777788888999888888888 999999999999998887777777665555 455 78
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHH--HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC------HH
Q 012442 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS--RALEFLNRVKKIVDPDGDSFAILLEGWEKEGN------VE 234 (463)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 234 (463)
+++++++++++.+.. +-+-.+|+.-.-.+.+. |.++ ++++.++.+.+..+.|-..|+.-...+...+. ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l-~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTF-DLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-cccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 888888888888764 55777777776666667 7777 88888888877667777888777666666665 77
Q ss_pred HHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHH-HHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 012442 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE-ALKFLRVMKGEN--CFPTLKFFSNALDILVKLNDSTHAVQL 311 (463)
Q Consensus 235 ~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~ 311 (463)
++++.++.+... .|.|..+|+-+...+.+.|+... +..+..++.+.+ -+.+...+..+..+|.+.|+.++|.++
T Consensus 204 eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 204 EELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 788888877665 77777888877777777776443 445555554432 133566677777777777777777777
Q ss_pred HHHH
Q 012442 312 WDIM 315 (463)
Q Consensus 312 ~~~~ 315 (463)
++.+
T Consensus 281 ~~~l 284 (306)
T 3dra_A 281 YDLL 284 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7774
No 101
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=2.8e-08 Score=86.79 Aligned_cols=181 Identities=9% Similarity=0.051 Sum_probs=87.8
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 012442 98 AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV--LSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175 (463)
Q Consensus 98 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (463)
|+..|+.......++..++..+..++...|++++|++++.+....+. .+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45555544332234444445555566666666666666665544443 3455555666666666666666666666654
Q ss_pred CCCCc-----CHHHHHHHHHHHHc--c-CCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 012442 176 HGVEQ-----DVVAVNSLLSAICR--Q-ENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERF 247 (463)
Q Consensus 176 ~g~~~-----~~~~~~~ll~~~~~--~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 247 (463)
. .| +..+...|..+++. . +++...|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+..
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 34 23333333333211 1 135566666666654422 222222233335555666666666655443310
Q ss_pred -------CCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 012442 248 -------EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE 283 (463)
Q Consensus 248 -------~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 283 (463)
+..|++..+.-.+|......|+ +|.+++.++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 0024455555344433333444 555555555554
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.07 E-value=4.7e-10 Score=88.67 Aligned_cols=136 Identities=16% Similarity=0.002 Sum_probs=57.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHH
Q 012442 126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205 (463)
Q Consensus 126 ~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 205 (463)
.|++++|+..+.......+.+...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..++.+. |++++|+..
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~-~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELE-ENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CchHHHHHH
Confidence 3444444444444333322223333444444444444444444444444332 22334444444444444 444444444
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhcCCCCchHhhHHHHHHHHHc
Q 012442 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKT-FGEMVERFEWNPEHVLAYETFLITLIR 266 (463)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~p~~~~~~~~li~~~~~ 266 (463)
|++..+..+.+..+|..+...|.+.|++++|.+. +++..+. .|++..+|......+..
T Consensus 88 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l---~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 88 YRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL---FPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH---STTCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHH
Confidence 4444443333444444444444444444443332 2333332 34444444444443333
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.07 E-value=1e-08 Score=85.93 Aligned_cols=171 Identities=10% Similarity=0.025 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHhCCC
Q 012442 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFAS----------------IFDSYCGAGKYDEAVMSFDVMSMHGV 178 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~ 178 (463)
.+-.....+.+.|++++|+..|+...+..+.+...|.. +..+|.+.|++++|+..|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 33344455666777777777777776665555555655 7777788888888888888777653
Q ss_pred CcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhcCCCCchHhh
Q 012442 179 EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN--VEEANKTFGEMVERFEWNPEHVLA 256 (463)
Q Consensus 179 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~ 256 (463)
+-+...+..+...+... |++++|+..|++..+..+.+..+|..+..+|...|+ .+.+...++.... ..| ....
T Consensus 85 p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~a 159 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCR-GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS---PTK-MQYA 159 (208)
T ss_dssp TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C---CCH-HHHH
T ss_pred CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC---CCc-hhHH
Confidence 44566777777777777 888888888887777556677777777777765543 3334444444421 122 2223
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 012442 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFS 293 (463)
Q Consensus 257 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 293 (463)
+.....++...|++++|...|++..+.. |+.....
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~ 194 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRF--PSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTS--CCHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--CCHHHHH
Confidence 4445555666777888888888777643 6654433
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.06 E-value=4.7e-09 Score=102.60 Aligned_cols=163 Identities=14% Similarity=-0.016 Sum_probs=126.4
Q ss_pred cCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 012442 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171 (463)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (463)
.|+.++|++.|+.+.+..+.+...|..+...+.+.|++++|.+.|++..+..+.+...+..+...|...|++++|.+.|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36788999999988877778899999999999999999999999999999888889999999999999999999999999
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhcC
Q 012442 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE---GNVEEANKTFGEMVERFE 248 (463)
Q Consensus 172 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~ 248 (463)
+..+.. +.+...+..+...+.+. |++++|.+.|++..+..+.+...+..+...+... |++++|.+.+++..+.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~-- 157 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDA-GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ-- 157 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH--
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc--
Confidence 998764 45677888899999999 9999999999998876667788999999999999 9999999999999876
Q ss_pred CCCchHhhHHH
Q 012442 249 WNPEHVLAYET 259 (463)
Q Consensus 249 ~~p~~~~~~~~ 259 (463)
.|.+...|..
T Consensus 158 -~p~~~~~~~~ 167 (568)
T 2vsy_A 158 -GVGAVEPFAF 167 (568)
T ss_dssp -TCCCSCHHHH
T ss_pred -CCcccChHHH
Confidence 4544444443
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=1.5e-09 Score=88.38 Aligned_cols=158 Identities=15% Similarity=0.054 Sum_probs=78.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHc
Q 012442 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA-ICR 194 (463)
Q Consensus 116 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~ 194 (463)
+..+...+.+.|++++|...|+...+..+.+...+..+...+.+.|++++|+..|++.... .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 4445555666666677766666666655556666666666666666666666666665543 2233222211111 111
Q ss_pred cCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc--hHhhHHHHHHHHHccCCHHH
Q 012442 195 QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDE 272 (463)
Q Consensus 195 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~ 272 (463)
. +....++..+++..+..+.+...+..+...+...|++++|...|+++.+. .|+ +...+..+...+...|+.++
T Consensus 87 ~-~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 87 Q-AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV---NLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp H-HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred h-cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CcccChHHHHHHHHHHHHHhCCCCc
Confidence 1 11122344444444333334455555555555555555555555554432 221 12244444455555555555
Q ss_pred HHHHHHH
Q 012442 273 ALKFLRV 279 (463)
Q Consensus 273 a~~~~~~ 279 (463)
|...|++
T Consensus 163 A~~~y~~ 169 (176)
T 2r5s_A 163 IASKYRR 169 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.05 E-value=2.9e-07 Score=81.15 Aligned_cols=224 Identities=8% Similarity=0.052 Sum_probs=152.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH----HccC--
Q 012442 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG--KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI----CRQE-- 196 (463)
Q Consensus 125 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~----~~~~-- 196 (463)
+...-++|++.++.+...++.+..+|+.--..+...| +++++++.++.+.... +-+..+|+.--..+ ...+
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 45 AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3344578999999999999888889998888888888 9999999999988764 34445555443333 2221
Q ss_pred CcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCC-----
Q 012442 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE--EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ----- 269 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~----- 269 (463)
+++++++.+++.+.+..+.|-.+|+.-.-.+.+.|.++ ++++.++.+.+. .|.|..+|+.-...+.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhh
Confidence 56788888888887777778888888777777778777 888888888765 66677788777766666665
Q ss_pred -HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhH-HHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 012442 270 -VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH-AVQLWDIMMVFH-GAFPDSLTYNMIFECLIKNKRVHEVEK 346 (463)
Q Consensus 270 -~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~ 346 (463)
++++++.++++.... +-|...|+.+-..+.+.|+... +..+...+.... .-..+...+..+...|.+.|+.++|.+
T Consensus 201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 677777777776654 3456666666666666666333 333444321111 012344556666666666666666666
Q ss_pred HHHHHHH
Q 012442 347 FFHEMIK 353 (463)
Q Consensus 347 ~~~~~~~ 353 (463)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666654
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.03 E-value=1.2e-08 Score=90.31 Aligned_cols=22 Identities=14% Similarity=0.019 Sum_probs=8.1
Q ss_pred HHHHHHHHcCCHhHHHHHHHHH
Q 012442 330 MIFECLIKNKRVHEVEKFFHEM 351 (463)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~ 351 (463)
.+...+...|++++|...|.++
T Consensus 224 ~la~~l~~~g~~~~A~~~l~~~ 245 (287)
T 3qou_A 224 QLALQLHQVGRNEEALELLFGH 245 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHH
Confidence 3333333333333333333333
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.03 E-value=6.8e-09 Score=101.51 Aligned_cols=154 Identities=14% Similarity=0.059 Sum_probs=117.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHH
Q 012442 126 NGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205 (463)
Q Consensus 126 ~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 205 (463)
.|++++|.+.|++..+..+.+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~-g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQ-QRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC-CCHHHHHHH
Confidence 4788999999999888877788899999999999999999999999998764 44577888888888888 999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHcc---CCHHHHHHHHHHHhh
Q 012442 206 LNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG---KQVDEALKFLRVMKG 282 (463)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~ 282 (463)
+++..+..+.+...+..+..+|.+.|++++|.+.|++..+. .|++...+..+...+... |++++|.+.+++..+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99987766677889999999999999999999999998775 676777888899999999 999999999999877
Q ss_pred CC
Q 012442 283 EN 284 (463)
Q Consensus 283 ~~ 284 (463)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 65
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.02 E-value=6.2e-09 Score=84.71 Aligned_cols=160 Identities=13% Similarity=0.068 Sum_probs=95.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HH
Q 012442 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG-WE 228 (463)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~ 228 (463)
+..+...+.+.|++++|+..|++..+.. +.+...+..+...+... |++++|+..++.+....+ +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~-g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLET-KQFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHT-TCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHC-CCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 4455566677777777777777765432 33455666666666666 777777777777655333 44333322211 11
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHhH
Q 012442 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP-TLKFFSNALDILVKLNDSTH 307 (463)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~ 307 (463)
..++..+|.+.|++..+. .|++...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 222333456666666554 56566667777777777777777777777766654221 23456666666667777777
Q ss_pred HHHHHHHH
Q 012442 308 AVQLWDIM 315 (463)
Q Consensus 308 a~~~~~~~ 315 (463)
|...|++.
T Consensus 163 A~~~y~~a 170 (176)
T 2r5s_A 163 IASKYRRQ 170 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666653
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.98 E-value=1.2e-07 Score=80.41 Aligned_cols=59 Identities=7% Similarity=0.018 Sum_probs=38.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 012442 365 TAITMLLDADEPEIAIEIWNYILENGILPL----EASANELLVGLRNLGRLSDVRRFAEEMLNRR 425 (463)
Q Consensus 365 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 425 (463)
.+...|.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 34556667777777777777777642 22 1356666777777777777777777776654
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.96 E-value=1.9e-08 Score=89.93 Aligned_cols=159 Identities=8% Similarity=-0.034 Sum_probs=85.9
Q ss_pred HHccCCcHHHHHHHHHHhhc---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCchHhhHHHHHH
Q 012442 192 ICRQENQTSRALEFLNRVKK---IVD---PDGDSFAILLEGWEKEGNVEEANKTFGEMVERF---EWNPEHVLAYETFLI 262 (463)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~---~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~~li~ 262 (463)
|... |++++|...|.+... ... .-..+|+.+..+|.+.|++++|...|++..+-. |-......+++.+..
T Consensus 46 ~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 46 FKNA-KQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444 556666555555433 000 012355566666666677777776666554321 100111345666666
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCC----HHHHHHHHH
Q 012442 263 TLIRGKQVDEALKFLRVMKGENCFP-----TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD----SLTYNMIFE 333 (463)
Q Consensus 263 ~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~ 333 (463)
.|.. |++++|+..|++..+..... ...++..+...|.+.|++++|...|++.+....-.++ ...+..+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 6666 77777777777664421000 1245666667777777777777777765432211111 124455555
Q ss_pred HHHHcCCHhHHHHHHHHHH
Q 012442 334 CLIKNKRVHEVEKFFHEMI 352 (463)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~ 352 (463)
.+...|++++|...|++..
T Consensus 204 ~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 5666677777777777766
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.95 E-value=5.9e-09 Score=82.29 Aligned_cols=139 Identities=9% Similarity=0.025 Sum_probs=117.5
Q ss_pred cCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 012442 92 YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFD 171 (463)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (463)
.++.+.|+..|+.+....+.+...+-.+...|.+.|++++|++.|++..+.++.+..+|..+..+|.+.|++++|+..|+
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 89 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYR 89 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 46778899999888766566677788899999999999999999999999999899999999999999999999999999
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHH-HHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 012442 172 VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF-LNRVKKIVDPDGDSFAILLEGWEKEGN 232 (463)
Q Consensus 172 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 232 (463)
+..+.. +-+...|..+...+.+. |+++++.+. +++..+-.|.+..+|......+...|+
T Consensus 90 ~al~~~-p~~~~~~~~la~~~~~~-~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 90 RSVELN-PTQKDLVLKIAELLCKN-DVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHH-CSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 998764 44678888899999999 888766554 577777667788888888887777664
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.92 E-value=1.5e-07 Score=78.93 Aligned_cols=160 Identities=8% Similarity=-0.038 Sum_probs=72.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC----CHhHHHHHHHHHHHhcCCCCCHHHHHHH
Q 012442 256 AYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN----DSTHAVQLWDIMMVFHGAFPDSLTYNMI 331 (463)
Q Consensus 256 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~l 331 (463)
++..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|.++|+.... .+ +...+..|
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~g---~~~a~~~L 91 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-AG---SKSGEIVL 91 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-TT---CHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-CC---CHHHHHHH
Confidence 44444444444444444444444444433 23333344444433 3 44445555444321 11 33334444
Q ss_pred HHHHHH----cCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 012442 332 FECLIK----NKRVHEVEKFFHEMIKNEWQ-PTPLNCATAITMLLD----ADEPEIAIEIWNYILENGILPLEASANELL 402 (463)
Q Consensus 332 i~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 402 (463)
...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .++.++|...|++..+. ..+...+..|.
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg 169 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAG 169 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHH
Confidence 444443 44555555555555544310 013444445555544 45555566555555553 11223444444
Q ss_pred HHHHcC-C-----CHHHHHHHHHHHHHCC
Q 012442 403 VGLRNL-G-----RLSDVRRFAEEMLNRR 425 (463)
Q Consensus 403 ~~~~~~-g-----~~~~a~~~~~~m~~~~ 425 (463)
..|... | ++++|.++|++..+.|
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 444332 2 5566666666555554
No 114
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.89 E-value=1.4e-06 Score=77.67 Aligned_cols=174 Identities=7% Similarity=-0.009 Sum_probs=136.7
Q ss_pred ccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-C-ChHHHH
Q 012442 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNG-RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA-G-KYDEAV 167 (463)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~-g-~~~~A~ 167 (463)
.....++|+++++.+....+-+..+|+.--.++...| .+++++++++.+...++.+..+|+.-...+.+. + ++++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 4456678999999888877888889999888888888 599999999999999999999999888887777 7 889999
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHH--------HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-------
Q 012442 168 MSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS--------RALEFLNRVKKIVDPDGDSFAILLEGWEKEGN------- 232 (463)
Q Consensus 168 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------- 232 (463)
++++++.+.. +-|-.+|+...-.+.+. |.++ ++++.++++.+..+.|...|+.....+.+.+.
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l-~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHF-STLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHH
Confidence 9999998765 55677777655555555 5555 78888888777667788888888777777775
Q ss_pred HHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCC
Q 012442 233 VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269 (463)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~ 269 (463)
++++++.+++.... .|.|..+|+-+-..+.+.|+
T Consensus 224 ~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 224 LQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 67788888777665 77788888776666666554
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=1.1e-07 Score=84.86 Aligned_cols=230 Identities=13% Similarity=0.055 Sum_probs=158.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc-cCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 012442 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR-QENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN 237 (463)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 237 (463)
..|++++|.+++++..+.. +.. +.+ . ++++.|...|++. ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~-~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWK-PDYDSAASEYAKA--------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCS-CCHHHHHHHHHHH--------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCC-CCHHHHHHHHHHH--------------HHHHHHcCCHHHHH
Confidence 3578889999998877531 111 122 4 8888888888765 45778899999999
Q ss_pred HHHHHHHHh---cCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHhHHH
Q 012442 238 KTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE----NCFP-TLKFFSNALDILVKLNDSTHAV 309 (463)
Q Consensus 238 ~~~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~ 309 (463)
..|.+..+. .+-...-..+|+.+...|...|++++|+..|++..+. |-.. ...++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999887653 1111112457888999999999999999999987543 2111 13567788888888 9999999
Q ss_pred HHHHHHHHhcCCCC----CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhCCCCHHHHH
Q 012442 310 QLWDIMMVFHGAFP----DSLTYNMIFECLIKNKRVHEVEKFFHEMIKN----EWQPT-PLNCATAITMLLDADEPEIAI 380 (463)
Q Consensus 310 ~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~ 380 (463)
..|++.+....-.. ...+++.+...|.+.|++++|...|++..+. +..+. ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998654322111 1457788888999999999999999998763 21111 235667777888889999999
Q ss_pred HHHHHHHHcCCCC-Ch---hhHHHHHHHHHcCCCHHHHHHH
Q 012442 381 EIWNYILENGILP-LE---ASANELLVGLRNLGRLSDVRRF 417 (463)
Q Consensus 381 ~~~~~~~~~~~~p-~~---~~~~~li~~~~~~g~~~~a~~~ 417 (463)
..|++.. ..... +. .....++.++ ..|+.+.+.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999987 32111 11 1334455555 56777666553
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.88 E-value=2.8e-07 Score=81.65 Aligned_cols=165 Identities=8% Similarity=-0.060 Sum_probs=94.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchH----hhHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-CC----HHHH
Q 012442 222 ILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV----LAYETFLITLIRGKQVDEALKFLRVMKGENCF-PT----LKFF 292 (463)
Q Consensus 222 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~ 292 (463)
..+..+...|++++|.+++++..+.....| +. ..+..+...+...+++++|+..|++..+.... .+ ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHP-EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCCh-HHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 346667778888888888887766422222 21 12334556666667778888888777663221 12 2256
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCCC-HHH
Q 012442 293 SNALDILVKLNDSTHAVQLWDIMMVFH----GAFPD-SLTYNMIFECLIKNKRVHEVEKFFHEMIKN----EWQPT-PLN 362 (463)
Q Consensus 293 ~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~ 362 (463)
+.+...|...|++++|...|+++.... +..+. ..++..+...|.+.|++++|...+++.++. +..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 677777777777777777777654211 11111 225556666666666666666666665532 11111 445
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHH
Q 012442 363 CATAITMLLDADE-PEIAIEIWNYIL 387 (463)
Q Consensus 363 ~~~li~~~~~~g~-~~~a~~~~~~~~ 387 (463)
|..+..+|.+.|+ .++|.+.+++..
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5556666666663 466666655554
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.87 E-value=5.1e-06 Score=74.07 Aligned_cols=179 Identities=7% Similarity=0.031 Sum_probs=140.5
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC-cH
Q 012442 122 VLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG-KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QT 199 (463)
Q Consensus 122 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~ 199 (463)
...+.+..++|+++++.+...++.+..+|+.--..+...| .++++++.++.+.... +-+..+|+.--..+....+ ++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 3444566678999999999999999999999888888888 5999999999999875 5567777776655554324 78
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCC--
Q 012442 200 SRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVE--------EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ-- 269 (463)
Q Consensus 200 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~-- 269 (463)
++++++++.+.+..+.|..+|+--.-.+.+.|.++ ++++.++++.+. .|.|..+|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccc
Confidence 89999999999888889999988776666666666 899999999876 77788899998888888776
Q ss_pred -----HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 012442 270 -----VDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDS 305 (463)
Q Consensus 270 -----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 305 (463)
++++++.+++..... +-|...|+.+-..+.+.|+.
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 678888888887764 44667777666666655543
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.86 E-value=1.1e-06 Score=77.81 Aligned_cols=97 Identities=10% Similarity=0.085 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc----hHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC----CCCC-H
Q 012442 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE----HVLAYETFLITLIRGKQVDEALKFLRVMKGEN----CFPT-L 289 (463)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~-~ 289 (463)
+|+.+...|...|++++|...|++..+.....|+ ...+++.+...|...|++++|+..+++..+.. .... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4555555555555555555555554411011111 11345555555555555555555555543221 1111 3
Q ss_pred HHHHHHHHHHHHcCCHhHH-HHHHHHH
Q 012442 290 KFFSNALDILVKLNDSTHA-VQLWDIM 315 (463)
Q Consensus 290 ~~~~~ll~~~~~~g~~~~a-~~~~~~~ 315 (463)
.+|..+..+|.+.|++++| ...++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4455555556666666655 4444443
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.86 E-value=8.4e-07 Score=78.58 Aligned_cols=96 Identities=10% Similarity=0.096 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh---c-CCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhh----CCCCCC-HH
Q 012442 220 FAILLEGWEKEGNVEEANKTFGEMVER---F-EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG----ENCFPT-LK 290 (463)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~ 290 (463)
++.+...|...|++++|...|++..+. . +..+....++..+...|.+.|++++|...+++..+ .+..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 444444444445555444444444321 0 11111223445555555555555555555554432 111111 33
Q ss_pred HHHHHHHHHHHcCC-HhHHHHHHHHH
Q 012442 291 FFSNALDILVKLND-STHAVQLWDIM 315 (463)
Q Consensus 291 ~~~~ll~~~~~~g~-~~~a~~~~~~~ 315 (463)
+|..+..+|.+.|+ +++|.+.+++.
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 45555555555552 35555555543
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.86 E-value=4.6e-07 Score=75.99 Aligned_cols=175 Identities=13% Similarity=0.059 Sum_probs=124.3
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHH
Q 012442 97 SAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG----KYDEAVMSFDV 172 (463)
Q Consensus 97 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~ 172 (463)
+|++.|+.+.+ .-++.++..+...|...+++++|++.|+...+.+ +...+..+...|.. + ++++|++.|++
T Consensus 4 eA~~~~~~aa~--~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAE--AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 45666665554 3577788888888888888888888888877765 56667777777777 6 78888888888
Q ss_pred HHhCCCCcCHHHHHHHHHHHHc----cCCcHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 012442 173 MSMHGVEQDVVAVNSLLSAICR----QENQTSRALEFLNRVKKIVDP--DGDSFAILLEGWEK----EGNVEEANKTFGE 242 (463)
Q Consensus 173 m~~~g~~~~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 242 (463)
..+.| +...+..|-..|.. . +++++|+.+|++..+..+. +...+..|...|.. .+++++|.+.|++
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGA-TDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSS-CCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCc-cCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 87654 45566666666665 5 7888888888887663221 26777777777777 7778888888888
Q ss_pred HHHhcCCCCchHhhHHHHHHHHHcc-C-----CHHHHHHHHHHHhhCC
Q 012442 243 MVERFEWNPEHVLAYETFLITLIRG-K-----QVDEALKFLRVMKGEN 284 (463)
Q Consensus 243 ~~~~~~~~p~~~~~~~~li~~~~~~-~-----~~~~a~~~~~~m~~~~ 284 (463)
..+. +- +..++..|...|... | ++++|...|++..+.|
T Consensus 155 A~~~-~~---~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL-SR---TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT-SC---TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc-CC---CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7663 11 334566666666543 2 7888888888777766
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.82 E-value=2e-07 Score=74.49 Aligned_cols=128 Identities=12% Similarity=-0.072 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012442 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193 (463)
Q Consensus 114 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 193 (463)
..|..+...+...|++++|...|+......+.+..++..+...+...|++++|.+.+++..+.. +.+...|..+...+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3455566666666666666666666666655566666666666666666666666666665542 334455555555555
Q ss_pred ccCCcHHHHHHHHHHhhcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 012442 194 RQENQTSRALEFLNRVKKIVDPDGDSFAI--LLEGWEKEGNVEEANKTFGEM 243 (463)
Q Consensus 194 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~ 243 (463)
.. |++++|...|++.....+.+...+.. ++..+.+.|++++|.+.+...
T Consensus 93 ~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 AL-GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 55 66666666666655433334444422 223355556666666555544
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=8.6e-07 Score=78.50 Aligned_cols=168 Identities=11% Similarity=-0.014 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH-----HHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCC--CCC--H
Q 012442 255 LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL-----KFFSNALDILVKLNDSTHAVQLWDIMMVFHGA--FPD--S 325 (463)
Q Consensus 255 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~--~ 325 (463)
..+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++......- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555566677777777777777766654321111 12333455566777888888888775432211 111 3
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CCC-C
Q 012442 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKN--EWQPT----PLNCATAITMLLDADEPEIAIEIWNYILENG----ILP-L 394 (463)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p-~ 394 (463)
.+|+.+...|...|++++|...|++..+. ..+.+ ..++..+..+|...|++++|.+.+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47777888888888888888888887631 11111 2577788888888999999998888876521 111 1
Q ss_pred hhhHHHHHHHHHcCCCHHHH-HHHHHHHH
Q 012442 395 EASANELLVGLRNLGRLSDV-RRFAEEML 422 (463)
Q Consensus 395 ~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 422 (463)
..+|..+...|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45777788889999999999 77677654
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.81 E-value=2.3e-07 Score=74.13 Aligned_cols=129 Identities=13% Similarity=0.060 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012442 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI 298 (463)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 298 (463)
.+..+...+...|++++|...|++..+. .|.+..++..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3444555555566666666666655543 34445555555555666666666666666555543 2234455555555
Q ss_pred HHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 299 LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEM 351 (463)
Q Consensus 299 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 351 (463)
+...|++++|...|+++.....-.+....+..+...+...|++++|...+.+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 55556666666555554433221111111122222344455555555555543
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.81 E-value=2.5e-07 Score=77.53 Aligned_cols=130 Identities=7% Similarity=-0.048 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 012442 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229 (463)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (463)
+..+...+...|++++|++.|++.. .|+...|..+...+... |++++|+..|++.....+.+...|..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTIL-KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3344555556666666666665553 44555666666666666 666666666666555444555666666666666
Q ss_pred cCCHHHHHHHHHHHHHhcC-------------CCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 012442 230 EGNVEEANKTFGEMVERFE-------------WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (463)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~-------------~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (463)
.|++++|.+.|++..+... ..|.....+..+...+...|++++|...|++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 6666666666666655310 122233566666667777777777777777666654
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=5.5e-07 Score=75.43 Aligned_cols=131 Identities=11% Similarity=-0.045 Sum_probs=102.9
Q ss_pred hHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 012442 253 HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIF 332 (463)
Q Consensus 253 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 332 (463)
+...+..+...+...|++++|...|++.. .|+...+..+...|...|++++|...|+..+... +.+...|..+.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg 78 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHH
Confidence 34456677788888899999999888773 5677888888888889999999999988865543 34567788888
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 012442 333 ECLIKNKRVHEVEKFFHEMIKNEWQPTP----------------LNCATAITMLLDADEPEIAIEIWNYILENG 390 (463)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 390 (463)
..|...|++++|.+.|++..+.. +.+. ..+..+..+|...|++++|.+.|+++.+..
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88888899999999998888764 3333 677788888888888888888888888743
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.79 E-value=3e-07 Score=69.29 Aligned_cols=97 Identities=18% Similarity=0.241 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012442 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (463)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 192 (463)
...|..+...+...|++++|.+.|+++....+.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 34455555555555555555555555555444444555555555555555555555555554432 22333444444444
Q ss_pred HccCCcHHHHHHHHHHhhc
Q 012442 193 CRQENQTSRALEFLNRVKK 211 (463)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~ 211 (463)
... |++++|...++++.+
T Consensus 88 ~~~-~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQ-GDYDEAIEYYQKALE 105 (125)
T ss_dssp HHT-TCHHHHHHHHHHHHH
T ss_pred HHh-cCHHHHHHHHHHHHH
Confidence 444 444444444444433
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.78 E-value=2.1e-07 Score=70.70 Aligned_cols=94 Identities=9% Similarity=0.109 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 012442 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229 (463)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (463)
+......|.+.|++++|++.|++.++.. +.+...|..+..++.+. |++++|+..|++..+..+.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKL-MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhh-ccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3334444444444444444444444332 22334444444444444 444444444444443333344445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 012442 230 EGNVEEANKTFGEMVE 245 (463)
Q Consensus 230 ~g~~~~a~~~~~~~~~ 245 (463)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555543
No 128
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.78 E-value=1.8e-07 Score=77.66 Aligned_cols=119 Identities=10% Similarity=-0.036 Sum_probs=52.5
Q ss_pred CcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---cCCCCchHhhHHHHHHHHHccCCHHHH
Q 012442 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER---FEWNPEHVLAYETFLITLIRGKQVDEA 273 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~~~li~~~~~~~~~~~a 273 (463)
|++++|.++++.+.........++..+...+...|++++|...+++..+. .+..+....++..+...+...|++++|
T Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 85 (203)
T 3gw4_A 6 HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85 (203)
T ss_dssp -CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 45555555333332222223444555555555555555555555544431 111222334455555555555555555
Q ss_pred HHHHHHHhhC----CCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 274 LKFLRVMKGE----NCFP--TLKFFSNALDILVKLNDSTHAVQLWDIM 315 (463)
Q Consensus 274 ~~~~~~m~~~----~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 315 (463)
.+.+++..+. +-.+ ....+..+...+...|++++|...+++.
T Consensus 86 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5555544332 1000 1123444444455555555555555443
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.77 E-value=2.6e-07 Score=70.26 Aligned_cols=111 Identities=5% Similarity=-0.057 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012442 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (463)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 192 (463)
...|......|.+.|++++|++.|++..+.++.+..+|..+..+|.+.|++++|++.|++.++.. +.+...|..+..++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 45677788888999999999999999888888888889999999999999999999999988764 45677888888888
Q ss_pred HccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 012442 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225 (463)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 225 (463)
... |++++|++.|++..+..|.+...+..+..
T Consensus 92 ~~~-~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAM-REWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHC-CCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 888 99999999999887755666666655543
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.76 E-value=2.2e-07 Score=71.07 Aligned_cols=97 Identities=6% Similarity=-0.016 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012442 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190 (463)
Q Consensus 111 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 190 (463)
.+...|..+...+.+.|++++|...|++..+..+.+..++..+...+...|++++|++.+++..+.. +.+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3344455555555555555555555555544444444444455555555555555555554444332 222333333334
Q ss_pred HHHccCCcHHHHHHHHHHh
Q 012442 191 AICRQENQTSRALEFLNRV 209 (463)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~ 209 (463)
.+... |++++|.+.|++.
T Consensus 93 ~~~~~-~~~~~A~~~~~~~ 110 (133)
T 2lni_A 93 ALEAM-KDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHT-TCHHHHHHHHHHH
T ss_pred HHHHH-hhHHHHHHHHHHH
Confidence 44444 4444444444443
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.75 E-value=3.8e-07 Score=68.69 Aligned_cols=112 Identities=18% Similarity=0.278 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 012442 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226 (463)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 226 (463)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+... |++++|..+++++....+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 3455556666666666666666666665442 23445555555555555 666666666666555444455555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHH
Q 012442 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT 263 (463)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~ 263 (463)
+...|++++|.+.|+++.+. .|.+...+..+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL---DPNNAEAKQNLGNA 120 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 66666666666666665543 34344444444333
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.73 E-value=1.3e-07 Score=74.18 Aligned_cols=99 Identities=12% Similarity=-0.001 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012442 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295 (463)
Q Consensus 216 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 295 (463)
+...+..+...+.+.|++++|...|+..... .|.+...|..+..+|...|++++|+..|++..... +.+...+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 3444555555566666666666666655543 45455555566666666666666666666655543 2234455555
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHh
Q 012442 296 LDILVKLNDSTHAVQLWDIMMVF 318 (463)
Q Consensus 296 l~~~~~~g~~~~a~~~~~~~~~~ 318 (463)
..+|...|++++|...|+..+..
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666666666666666654443
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.73 E-value=4.5e-08 Score=84.37 Aligned_cols=186 Identities=6% Similarity=-0.103 Sum_probs=97.3
Q ss_pred CcHHHHHHHHHHhhcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHhcCCCCchH---------------
Q 012442 197 NQTSRALEFLNRVKKIVDPDGDSFAIL-------LEGWEKEGNVEEANKTFGEMVERFEWNPEHV--------------- 254 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~--------------- 254 (463)
++...|.+.|.++.+-.+-....|..+ ...+...++..+++..+..- .++.|...
T Consensus 20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~---l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGS---VQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHT---TTCCGGGGCCEEECCTTTCCCEE
T ss_pred CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHH---hcCChhhhhhhhccCCccccccc
Confidence 566666666666555444555555555 34444444444444433333 23333211
Q ss_pred ------hhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCC--HH
Q 012442 255 ------LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD--SL 326 (463)
Q Consensus 255 ------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~ 326 (463)
..+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.. .... .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a-~~~~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSA-GKWP-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTG-GGCS-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHh-hccC-CcccHHH
Confidence 122334555666677777777776666544 33334444445666666777776666542 1110 110 22
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 012442 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT--PLNCATAITMLLDADEPEIAIEIWNYILEN 389 (463)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 389 (463)
.+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 455555666666666666666666654322132 224445555566666666666666666653
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.72 E-value=3.7e-07 Score=69.45 Aligned_cols=114 Identities=14% Similarity=0.010 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012442 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193 (463)
Q Consensus 114 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 193 (463)
..+..+...+...|++++|...|++.....+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3444444555555555555555555444444444444445555555555555555554444331 222333333444444
Q ss_pred ccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 012442 194 RQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEK 229 (463)
Q Consensus 194 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (463)
.. |++++|...|++.....+.+...+..+..++.+
T Consensus 92 ~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 92 SL-NKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred Hh-CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 44 444444444444333222333333333333333
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=5.3e-08 Score=85.70 Aligned_cols=95 Identities=12% Similarity=-0.040 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012442 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (463)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 192 (463)
...+..+...+.+.|++++|+..|+......+.+...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34444455555555555555555555555444444455555555555555555555555544432 22333444444444
Q ss_pred HccCCcHHHHHHHHHHh
Q 012442 193 CRQENQTSRALEFLNRV 209 (463)
Q Consensus 193 ~~~~~~~~~a~~~~~~~ 209 (463)
... |++++|+..|++.
T Consensus 83 ~~~-g~~~~A~~~~~~a 98 (281)
T 2c2l_A 83 LEM-ESYDEAIANLQRA 98 (281)
T ss_dssp HHT-TCHHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHHHH
Confidence 444 4444444444443
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.72 E-value=4.7e-07 Score=69.19 Aligned_cols=117 Identities=8% Similarity=0.028 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 012442 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225 (463)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 225 (463)
+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+...+... |++++|+..+++..+..+.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKL-LEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 45667777777777778888877777777653 33566666666677666 77777777777766644556677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHcc
Q 012442 226 GWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267 (463)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~ 267 (463)
++.+.|++++|.+.|++..+. .|.+...+..+...+...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL---DSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CGGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHh
Confidence 777777777777777777654 454455555555555443
No 137
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.71 E-value=1.6e-05 Score=75.67 Aligned_cols=327 Identities=10% Similarity=-0.009 Sum_probs=205.2
Q ss_pred CCCCHHHHHHHHHhc--cC-CchHHHHHHHHhcC--C-CCCCHHHHHHHHHHHH----hCCChHHHHHHHHHHHHcCCCC
Q 012442 77 IIPTPDLVHEVLQLS--YD-SPSSAVDFFRWAGR--G-QRLSPYAWNLMVDVLG----KNGRFEQMWNAVRVMKEDGVLS 146 (463)
Q Consensus 77 ~~~~~~~~~~~l~~~--~~-~~~~a~~~~~~~~~--~-~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~ 146 (463)
..|+...+...+... .+ ..+....+|+.+.. | .+.+...|...+..+. .+++.+.+..+|+........+
T Consensus 43 ~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~ 122 (493)
T 2uy1_A 43 KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGS 122 (493)
T ss_dssp TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTT
T ss_pred cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhh
Confidence 357888888887722 22 34667788887765 3 3567788988888764 3467889999999988743323
Q ss_pred -HHHHHHHHHHHH-------------hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccC-C--c---HHHHHHHH
Q 012442 147 -LPTFASIFDSYC-------------GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE-N--Q---TSRALEFL 206 (463)
Q Consensus 147 -~~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~--~---~~~a~~~~ 206 (463)
...|......-. ..+.+..|..+++.+...--..+...|...+.--.... + + .+.+..+|
T Consensus 123 ~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y 202 (493)
T 2uy1_A 123 LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH 202 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence 223332222111 11233344555554442100113345655555432210 1 1 34577889
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhC---
Q 012442 207 NRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE--- 283 (463)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 283 (463)
+++....+.+...|...+..+.+.|+.+.|.++|++.... |.+...|.. |....+.++. ++.+.+.
T Consensus 203 e~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~----P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~ 271 (493)
T 2uy1_A 203 NYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM----SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC-
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcHHHHHH----HHhhcchhHH---HHHHHHHHHh
Confidence 9887777788999999999999999999999999999873 645434432 2222122222 2222211
Q ss_pred C------CCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-cCCHhHHHHHHHHHHH
Q 012442 284 N------CFP---TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIK-NKRVHEVEKFFHEMIK 353 (463)
Q Consensus 284 ~------~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~ 353 (463)
. ..+ ....|...+..+.+.++.+.|..+|+.+ ...+ .+...|......-.. .++.+.|..+|+...+
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 0 001 1245667777777788999999999995 3222 244444432222222 3469999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012442 354 NEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
.- +-+...+...++.....|+.+.|..+|+.+. .....|...+..-...|+.+.+.++++++.+
T Consensus 349 ~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 53 3345556667777778899999999999972 2466888888877888999999998888764
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.71 E-value=2.5e-08 Score=90.28 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC----------------HHHHHHHHHH
Q 012442 128 RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----------------VVAVNSLLSA 191 (463)
Q Consensus 128 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~ll~~ 191 (463)
++++|...|+......+.+...+..+...+.+.|++++|+..|++..+.. |+ ...|..+..+
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433332222245556666667777777777777777666542 22 2445555555
Q ss_pred HHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHH
Q 012442 192 ICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVD 271 (463)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~ 271 (463)
+.+. |++++|+..|++..+..+.+...|..+..+|...|++++|...|++..+. .|++..++..+...+.+.|+.+
T Consensus 206 ~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 206 HLKL-QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHH
Confidence 5555 55555555555554433445555555555555555555555555555443 4444445555555555555555
Q ss_pred HH
Q 012442 272 EA 273 (463)
Q Consensus 272 ~a 273 (463)
++
T Consensus 282 ~a 283 (336)
T 1p5q_A 282 AR 283 (336)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.70 E-value=4.5e-07 Score=71.16 Aligned_cols=103 Identities=13% Similarity=0.173 Sum_probs=46.7
Q ss_pred CCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHH
Q 012442 248 EWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLT 327 (463)
Q Consensus 248 ~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 327 (463)
.+.|++...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++++.... .+...
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P--~~~~~ 106 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK--NDYTP 106 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--SCCHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--CCcHH
Confidence 3344444445555555555555555555555554432 22344444444444444444444444444333221 12233
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHH
Q 012442 328 YNMIFECLIKNKRVHEVEKFFHEMIK 353 (463)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (463)
|..+..+|.+.|++++|...|++.++
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444444444444
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.69 E-value=2.7e-08 Score=82.63 Aligned_cols=150 Identities=12% Similarity=0.060 Sum_probs=75.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-cC--------------HHHH
Q 012442 121 DVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVE-QD--------------VVAV 185 (463)
Q Consensus 121 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~--------------~~~~ 185 (463)
......|+++++.+.++.-....+.....+..+...+.+.|++++|++.|++..+..-. ++ ...|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 33344455555555544322222223445566666666777777777777766653210 10 1445
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHH
Q 012442 186 NSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLI 265 (463)
Q Consensus 186 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~ 265 (463)
..+..++... |++++|+..++...+..+.+...+..+..+|...|++++|.+.|++..+. .|++...+..+...+.
T Consensus 92 ~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 92 LNLATCYNKN-KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHH
Confidence 5555555555 66666666666655544455566666666666666666666666666543 4545555555555555
Q ss_pred ccCCHHHHH
Q 012442 266 RGKQVDEAL 274 (463)
Q Consensus 266 ~~~~~~~a~ 274 (463)
..++.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 555444444
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.69 E-value=1.5e-07 Score=73.85 Aligned_cols=94 Identities=10% Similarity=-0.038 Sum_probs=46.1
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHH
Q 012442 185 VNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264 (463)
Q Consensus 185 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~ 264 (463)
+..+...+.+. |++++|+..|++.....+.+...|..+..+|...|++++|...|++..+. .|++...|..+..+|
T Consensus 39 ~~~lg~~~~~~-g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 39 IYSYAYDFYNK-GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---GKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CCCCcHHHHHHHHHH
Confidence 33344444444 55555555555544433444445555555555555555555555555433 444444455555555
Q ss_pred HccCCHHHHHHHHHHHhh
Q 012442 265 IRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 265 ~~~~~~~~a~~~~~~m~~ 282 (463)
...|++++|...|++..+
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555444
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.69 E-value=1.2e-07 Score=77.10 Aligned_cols=96 Identities=9% Similarity=0.071 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHhcCCCCchHhhHHH
Q 012442 183 VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG-WEKEGNV--EEANKTFGEMVERFEWNPEHVLAYET 259 (463)
Q Consensus 183 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~a~~~~~~~~~~~~~~p~~~~~~~~ 259 (463)
..|..+...+... |++++|...|++..+..+.+...+..+..+ +...|++ ++|...|++..+. .|.+...+..
T Consensus 45 ~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~ 120 (177)
T 2e2e_A 45 EQWALLGEYYLWQ-NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL---DSNEITALML 120 (177)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh---CCCcHHHHHH
Confidence 3333333334333 444444444444333222333344444444 3344444 4444444444433 3333444444
Q ss_pred HHHHHHccCCHHHHHHHHHHHhh
Q 012442 260 FLITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 260 li~~~~~~~~~~~a~~~~~~m~~ 282 (463)
+...+...|++++|...|++..+
T Consensus 121 la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 121 LASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 44444444444444444444444
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.68 E-value=2.1e-07 Score=77.30 Aligned_cols=82 Identities=12% Similarity=-0.009 Sum_probs=37.8
Q ss_pred CCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHhcCChHHH
Q 012442 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG------VLSLPTFASIFDSYCGAGKYDEA 166 (463)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~li~~~~~~g~~~~A 166 (463)
|++++|.+.++.+.........++..+...+...|++++|...+++..... .....++..+...+...|++++|
T Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 85 (203)
T 3gw4_A 6 HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85 (203)
T ss_dssp -CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 455555553333332222344455555555555555555555555544310 11233444445555555555555
Q ss_pred HHHHHHHH
Q 012442 167 VMSFDVMS 174 (463)
Q Consensus 167 ~~~~~~m~ 174 (463)
.+.+++..
T Consensus 86 ~~~~~~al 93 (203)
T 3gw4_A 86 RRCFLEER 93 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=6.8e-07 Score=67.94 Aligned_cols=115 Identities=10% Similarity=0.046 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 012442 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227 (463)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (463)
..+..+...+...|++++|.+.|++..... +.+...+..+...+... |++++|...++......+.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKL-GNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh-hchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 344445555555555555555555554332 22344444444444444 5555555555444443333344444444445
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHcc
Q 012442 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267 (463)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~ 267 (463)
...|++++|.+.|++..+. .|.+...+..+...+...
T Consensus 91 ~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL---DPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHH
Confidence 5555555555555444432 333333444444444333
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.67 E-value=2.4e-07 Score=75.17 Aligned_cols=120 Identities=8% Similarity=0.106 Sum_probs=76.7
Q ss_pred hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHccCCcH--HH
Q 012442 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA-ICRQENQT--SR 201 (463)
Q Consensus 125 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~~~~~--~~ 201 (463)
..|++++|...++......+.+...|..+...|...|++++|...|++..+.. +.+...+..+... +... |++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~-~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQA-SQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHT-TTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc-CCcchHH
Confidence 34666677777776666666666667777777777777777777777766543 2345555555555 4455 666 77
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012442 202 ALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER 246 (463)
Q Consensus 202 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 246 (463)
|...++......+.+...+..+...|...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777766644556667777777777777777777777777654
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.67 E-value=1.2e-06 Score=75.56 Aligned_cols=50 Identities=2% Similarity=-0.221 Sum_probs=33.4
Q ss_pred hCCChHHHHHHHHHHHHcCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHH
Q 012442 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASI-------FDSYCGAGKYDEAVMSFDVMS 174 (463)
Q Consensus 125 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~ 174 (463)
+.++...|.+.|.++.+..+.....|..+ ...+.+.++..+++..+..-.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l 74 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV 74 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 56888888888888888877777777777 455555555555555444443
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=6.9e-07 Score=78.56 Aligned_cols=99 Identities=13% Similarity=0.014 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 012442 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLE 225 (463)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 225 (463)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+...+.+. |++++|+..+++..+..+.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKM-QQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45567777778888888888888888877653 33667777777777777 88888888888877766667777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 012442 226 GWEKEGNVEEANKTFGEMVER 246 (463)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~ 246 (463)
+|...|++++|.+.|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888777654
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.63 E-value=3.9e-07 Score=71.51 Aligned_cols=108 Identities=9% Similarity=-0.018 Sum_probs=66.7
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC
Q 012442 102 FRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD 181 (463)
Q Consensus 102 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 181 (463)
|+.+....+.+...+..+...+.+.|++++|...|+.....++.+...|..+..+|...|++++|++.|++..... +.+
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~ 88 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXE 88 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 3333333344555566666666677777777777777666666666666666667777777777777776666543 234
Q ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHhhc
Q 012442 182 VVAVNSLLSAICRQENQTSRALEFLNRVKK 211 (463)
Q Consensus 182 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 211 (463)
...+..+..++... |++++|+..|+...+
T Consensus 89 ~~~~~~lg~~~~~~-g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 89 PRFPFHAAECLLQX-GELAEAESGLFLAQE 117 (148)
T ss_dssp THHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 45555556666666 666666666666544
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.62 E-value=2.6e-05 Score=69.16 Aligned_cols=16 Identities=0% Similarity=-0.043 Sum_probs=9.5
Q ss_pred CCCHHHHHHHHHHHHH
Q 012442 373 ADEPEIAIEIWNYILE 388 (463)
Q Consensus 373 ~g~~~~a~~~~~~~~~ 388 (463)
.|..+++...+.++.+
T Consensus 288 ~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 288 LLYEKETLQYFSTLKA 303 (331)
T ss_dssp TTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 4555566666666665
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.61 E-value=5.2e-05 Score=67.24 Aligned_cols=169 Identities=9% Similarity=-0.059 Sum_probs=120.7
Q ss_pred CchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-
Q 012442 94 SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGR----------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK- 162 (463)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~- 162 (463)
..++|+.+++.+....|-+..+|+.--.++...++ +++++.+++.+...++.+..+|+.-...+.+.|+
T Consensus 45 ~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 45 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc
Confidence 34578888888887777777777766555554443 5778888888888888888888877777777773
Q ss_pred -hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCc-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc----------
Q 012442 163 -YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQ-TSRALEFLNRVKKIVDPDGDSFAILLEGWEKE---------- 230 (463)
Q Consensus 163 -~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 230 (463)
+++++++++++.+.. +-|..+|+.-.-.+... |. ++++++.++.+.+..+.|...|+.....+.+.
T Consensus 125 ~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l-~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 125 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 788888888888764 55677777666666666 66 57888888887776677778887766666554
Q ss_pred ----CCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHcc
Q 012442 231 ----GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG 267 (463)
Q Consensus 231 ----g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~ 267 (463)
+.++++++.++..... .|+|..+|+-+-..+.+.
T Consensus 203 ~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSS
T ss_pred ccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhc
Confidence 3467777777777655 777777776555544444
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.60 E-value=8.7e-07 Score=80.11 Aligned_cols=150 Identities=11% Similarity=-0.005 Sum_probs=123.9
Q ss_pred CchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHH
Q 012442 94 SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---------------LPTFASIFDSYC 158 (463)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---------------~~~~~~li~~~~ 158 (463)
+++.|+..|+......+.+...|..+...+.+.|++++|+..|++.....+.+ ..+|..+..+|.
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445444443222223456789999999999999999999999999887755 689999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH-H
Q 012442 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEA-N 237 (463)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~ 237 (463)
+.|++++|+..|++.++.. +.+...|..+..++... |++++|+..|++..+..+.+...+..+..++.+.|++++| .
T Consensus 208 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAV-NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764 55788899999999999 9999999999999886677889999999999999999988 4
Q ss_pred HHHHHHHH
Q 012442 238 KTFGEMVE 245 (463)
Q Consensus 238 ~~~~~~~~ 245 (463)
++|..|..
T Consensus 286 ~~~~~~~~ 293 (336)
T 1p5q_A 286 KLYANMFE 293 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666654
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.57 E-value=1.7e-06 Score=69.04 Aligned_cols=105 Identities=10% Similarity=-0.024 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 012442 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295 (463)
Q Consensus 216 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 295 (463)
+...+..+...+.+.|++++|++.|++..+. .|.+...|..+..+|...|++++|+..|++..+.. +.+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4456666777777777777777777777654 56566677777777777777777777777777654 3346677777
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHhcCCCCC
Q 012442 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPD 324 (463)
Q Consensus 296 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 324 (463)
..+|...|++++|...|++.+....-.++
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 77777777777777777776555444444
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.57 E-value=3.2e-06 Score=62.74 Aligned_cols=96 Identities=9% Similarity=-0.087 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012442 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193 (463)
Q Consensus 114 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 193 (463)
..+..+...+...|++++|...|+......+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444555555555555555555555555544445555555555555555555555555554432 223344444444444
Q ss_pred ccCCcHHHHHHHHHHhhc
Q 012442 194 RQENQTSRALEFLNRVKK 211 (463)
Q Consensus 194 ~~~~~~~~a~~~~~~~~~ 211 (463)
.. |++++|...++...+
T Consensus 84 ~~-~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FL-NRFEEAKRTYEEGLK 100 (118)
T ss_dssp HT-TCHHHHHHHHHHHHT
T ss_pred HH-hhHHHHHHHHHHHHH
Confidence 44 444444444444443
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.57 E-value=8.7e-07 Score=68.92 Aligned_cols=96 Identities=13% Similarity=-0.001 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012442 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297 (463)
Q Consensus 218 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 297 (463)
..+..+...+.+.|++++|...|+..... .|.+...|..+..++...|++++|+..|++....+ +.+...+..+..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34444555555666666666666665543 45455555566666666666666666666655543 223445555555
Q ss_pred HHHHcCCHhHHHHHHHHHHH
Q 012442 298 ILVKLNDSTHAVQLWDIMMV 317 (463)
Q Consensus 298 ~~~~~g~~~~a~~~~~~~~~ 317 (463)
+|...|++++|...|+.++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666655433
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.4e-06 Score=66.07 Aligned_cols=95 Identities=13% Similarity=0.002 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 012442 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAIC 193 (463)
Q Consensus 114 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 193 (463)
..|..+...+.+.|++++|+..|++..+..+.+...|..+..++.+.|++++|+..|++..+.. +.+...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555555432 223444444444444
Q ss_pred ccCCcHHHHHHHHHHhh
Q 012442 194 RQENQTSRALEFLNRVK 210 (463)
Q Consensus 194 ~~~~~~~~a~~~~~~~~ 210 (463)
.. |++++|...|++..
T Consensus 84 ~~-~~~~~A~~~~~~al 99 (126)
T 3upv_A 84 AV-KEYASALETLDAAR 99 (126)
T ss_dssp HT-TCHHHHHHHHHHHH
T ss_pred HH-hCHHHHHHHHHHHH
Confidence 44 55555555544443
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.56 E-value=4.4e-07 Score=70.65 Aligned_cols=99 Identities=7% Similarity=-0.044 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012442 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190 (463)
Q Consensus 111 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 190 (463)
.+...+..+...+.+.|++++|...|+.....++.+...|..+..++.+.|++++|+..|++..... +.+...+..+..
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 3444555566666666777777777777666666666666666667777777777777776666543 334445555556
Q ss_pred HHHccCCcHHHHHHHHHHhhc
Q 012442 191 AICRQENQTSRALEFLNRVKK 211 (463)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~ 211 (463)
++... |++++|+..|+...+
T Consensus 95 ~~~~~-g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQL-GDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHH
Confidence 66666 666666666666544
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.52 E-value=3.5e-06 Score=63.82 Aligned_cols=96 Identities=10% Similarity=-0.001 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 012442 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGW 227 (463)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (463)
..|..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+. |++++|+..+++..+..+.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKL-MSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 345555556666666666666666665543 33455555555555555 6666666666665554444555566666666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 012442 228 EKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~ 245 (463)
...|++++|.+.|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666665544
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.51 E-value=4.8e-06 Score=61.79 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 012442 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228 (463)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (463)
.+..+...+...|++++|.+.|++..... +.+...+..+...+... |++++|...+++..+..+.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKK-GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34445555555555555555555554432 22344444444445444 55555555555544433334444555555555
Q ss_pred hcCCHHHHHHHHHHHH
Q 012442 229 KEGNVEEANKTFGEMV 244 (463)
Q Consensus 229 ~~g~~~~a~~~~~~~~ 244 (463)
..|++++|.+.|++..
T Consensus 84 ~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 5555555555555543
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.47 E-value=2.6e-06 Score=64.67 Aligned_cols=107 Identities=8% Similarity=0.052 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--CCC----hhhHH
Q 012442 326 LTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGI--LPL----EASAN 399 (463)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~ 399 (463)
..+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++.++... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566667777777777777777777764 55667777777777777777777777777765321 111 12555
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHH
Q 012442 400 ELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHK 435 (463)
Q Consensus 400 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 435 (463)
.+..++...|++++|++.|++.... .|+..+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 6667777888888888888877653 355554443
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.45 E-value=3.4e-06 Score=64.82 Aligned_cols=100 Identities=12% Similarity=-0.046 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 012442 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLL 189 (463)
Q Consensus 110 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 189 (463)
+.+...|..+...+...|++++|...|+......+.+...|..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 44566677777777777777777777777766666666677777777777777777777777766543 33455666666
Q ss_pred HHHHccCCcHHHHHHHHHHhhc
Q 012442 190 SAICRQENQTSRALEFLNRVKK 211 (463)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~ 211 (463)
.++... |++++|+..|++...
T Consensus 85 ~~~~~~-~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEM-ESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHH-hhHHHHHHHHHHHHH
Confidence 666666 666666666666543
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.1e-05 Score=62.73 Aligned_cols=98 Identities=12% Similarity=0.072 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHH
Q 012442 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFA 221 (463)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 221 (463)
+...+..+...+...|++++|.+.|++..+. .|+ ...|..+...+... |++++|+..+++..+..+.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKL-EDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCccCHHHHH
Confidence 3444555555555555555555555555543 233 34444455555555 5666666655555443344455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh
Q 012442 222 ILLEGWEKEGNVEEANKTFGEMVER 246 (463)
Q Consensus 222 ~l~~~~~~~g~~~~a~~~~~~~~~~ 246 (463)
.+..++...|++++|.+.|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666666666666666543
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.44 E-value=5.8e-06 Score=65.94 Aligned_cols=99 Identities=8% Similarity=-0.046 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012442 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190 (463)
Q Consensus 111 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 190 (463)
.+...|..+...+.+.|++++|+..|++..+..+.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456677788888888888888888888888777778888888888888888888888888887654 345667777777
Q ss_pred HHHccCCcHHHHHHHHHHhhc
Q 012442 191 AICRQENQTSRALEFLNRVKK 211 (463)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~ 211 (463)
++... |++++|+..|++..+
T Consensus 88 ~~~~~-g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDM-ADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHc-cCHHHHHHHHHHHHH
Confidence 77777 888888888887765
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.43 E-value=3.5e-05 Score=72.15 Aligned_cols=169 Identities=6% Similarity=-0.095 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCch---HhhHHHHHHHHHccCCHHHHHHHHHHHhh----CCCCCC-HHH
Q 012442 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPEH---VLAYETFLITLIRGKQVDEALKFLRVMKG----ENCFPT-LKF 291 (463)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~ 291 (463)
+..+...|.+.|++++|.+.+..+.+..+..+.. ..+.+.+...+...|+++++..+++.... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666777777777777776665432222211 11223333334445677777777666532 222222 345
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHhcCCC---C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC--CCCCC----HH
Q 012442 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAF---P-DSLTYNMIFECLIKNKRVHEVEKFFHEMIKN--EWQPT----PL 361 (463)
Q Consensus 292 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~ 361 (463)
+..+...|...|++++|..+++.+.....-. + ...++..++..|...|++++|..++++.... .+..+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6667777777777777777777654332211 1 2346667777777777777777777776542 11111 23
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 362 NCATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 362 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
.+..+...+...|++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455666667777777777777666553
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.42 E-value=6.1e-06 Score=62.60 Aligned_cols=94 Identities=20% Similarity=0.189 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC--CCCC----HHHH
Q 012442 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN--CFPT----LKFF 292 (463)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~----~~~~ 292 (463)
.+..+...+.+.|++++|++.|++..+. .|++..+|+.+..+|...|++++|++.+++..+.+ ...+ ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4455566666666666666666666543 55556666666666666666666666666654432 0111 1234
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHH
Q 012442 293 SNALDILVKLNDSTHAVQLWDIM 315 (463)
Q Consensus 293 ~~ll~~~~~~g~~~~a~~~~~~~ 315 (463)
..+..++...|++++|.+.|++.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 44445555555555555555554
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=8.6e-06 Score=63.34 Aligned_cols=99 Identities=15% Similarity=-0.024 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 012442 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNS 187 (463)
Q Consensus 111 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 187 (463)
.+...+..+...+...|++++|.+.|++..+..+.+ ...|..+...|...|++++|++.+++..+.. +.+...+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 344445555555555555555555555555444332 4445555555555555555555555554432 223444444
Q ss_pred HHHHHHccCCcHHHHHHHHHHhhc
Q 012442 188 LLSAICRQENQTSRALEFLNRVKK 211 (463)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~ 211 (463)
+..++... |++++|...|++...
T Consensus 105 ~a~~~~~~-~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKL-GRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHH
Confidence 55555555 555555555555444
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.40 E-value=4.8e-06 Score=68.84 Aligned_cols=132 Identities=14% Similarity=0.018 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 012442 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL----------------PTFASIFDSYCGAGKYDEAVMSFDVMSM 175 (463)
Q Consensus 112 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (463)
....+..+...+.+.|++++|+..|++.....+.+. .+|..+..+|.+.|++++|+..+++..+
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344677778888888999999999988887654332 7788888889999999999999998887
Q ss_pred CCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 012442 176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN-KTFGEMVE 245 (463)
Q Consensus 176 ~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~ 245 (463)
.. +.+...+..+..++... |++++|+..|++.....+.+...+..+..++...++.+++. ..|..+..
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYF-GFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred hC-cccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 63 45677788888888888 99999999999887755667788888888888777777666 45555543
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=4.4e-06 Score=61.34 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=5.4
Q ss_pred HhcCCHHHHHHHHHH
Q 012442 228 EKEGNVEEANKTFGE 242 (463)
Q Consensus 228 ~~~g~~~~a~~~~~~ 242 (463)
...|++++|...|++
T Consensus 17 ~~~~~~~~A~~~~~~ 31 (112)
T 2kck_A 17 YDAGNYTESIDLFEK 31 (112)
T ss_dssp HSSCCHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHH
Confidence 333333333333333
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.39 E-value=4e-06 Score=61.58 Aligned_cols=96 Identities=8% Similarity=-0.056 Sum_probs=54.3
Q ss_pred HHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc--hHhhHHHHH
Q 012442 184 AVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE--HVLAYETFL 261 (463)
Q Consensus 184 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~li 261 (463)
.+..+...+... |++++|...|++..+..+.+...+..+...+...|++++|.+.|++..+. .|. +...+..+.
T Consensus 8 ~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 8 EYYLEGVLQYDA-GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV---IEDEYNKDVWAAKA 83 (112)
T ss_dssp GGGGHHHHHHSS-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---SCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHh-hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccchHHHHHHHH
Confidence 344444455555 55555555555554433445555556666666666666666666665543 344 455566666
Q ss_pred HHHHcc-CCHHHHHHHHHHHhhC
Q 012442 262 ITLIRG-KQVDEALKFLRVMKGE 283 (463)
Q Consensus 262 ~~~~~~-~~~~~a~~~~~~m~~~ 283 (463)
..+... |++++|.+.+++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666665554
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=2.7e-05 Score=72.94 Aligned_cols=195 Identities=7% Similarity=-0.043 Sum_probs=106.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC-----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCcC
Q 012442 120 VDVLGKNGRFEQMWNAVRVMKEDGVLS-----------------LPTFASIFDSYCGAGKYDEAVMSFDVMSMHG-VEQD 181 (463)
Q Consensus 120 i~~~~~~g~~~~a~~~~~~m~~~~~~~-----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~ 181 (463)
...+.+.|++++|++.|..+.+..... ..++..+...|...|++++|.+.+..+...- -.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 445667788888888888877765421 1235667777777777777777777665321 0111
Q ss_pred H---HHHHHHHHHHHccCCcHHHHHHHHHHhhc-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC---C
Q 012442 182 V---VAVNSLLSAICRQENQTSRALEFLNRVKK-----IVDP-DGDSFAILLEGWEKEGNVEEANKTFGEMVERFE---W 249 (463)
Q Consensus 182 ~---~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~ 249 (463)
. ......+..+....|+.+.+..+++.... +..+ -..++..+...|...|++++|..+++++..... -
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12223333333333677777777666432 2222 234556666777777777777777766654311 1
Q ss_pred CCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhC----CCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 250 NPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE----NCFPT--LKFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 250 ~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
.+....++..++..|...|++++|..++++.... +.++. ...+..+...+...|+++.|...|..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1222345566666666666666666666655331 11111 12334444445555666666555555
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.38 E-value=8e-06 Score=62.68 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012442 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL 296 (463)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 296 (463)
...+..+...+...|++++|...|+..... .|++...|..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 344444444444444444444444444432 33334444444444444444444444444444432 22334444444
Q ss_pred HHHHHcCCHhHHHHHHHHH
Q 012442 297 DILVKLNDSTHAVQLWDIM 315 (463)
Q Consensus 297 ~~~~~~g~~~~a~~~~~~~ 315 (463)
.+|...|++++|...|+.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 4444444444444444443
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=4.3e-06 Score=63.38 Aligned_cols=26 Identities=4% Similarity=0.038 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012442 218 DSFAILLEGWEKEGNVEEANKTFGEM 243 (463)
Q Consensus 218 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 243 (463)
..+..+...+...|++++|...+++.
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33333333333334444443333333
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.36 E-value=4.9e-06 Score=63.07 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CcC----HHHHHH
Q 012442 114 YAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV--EQD----VVAVNS 187 (463)
Q Consensus 114 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~~ 187 (463)
..|..+...+...|++++|...|+......+.+...+..+...+...|++++|...+++...... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45566666666667777777776666666555666666666666666666666666666654320 011 334444
Q ss_pred HHHHHHccCCcHHHHHHHHHHhhc
Q 012442 188 LLSAICRQENQTSRALEFLNRVKK 211 (463)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~ 211 (463)
+...+... |++++|.+.|+...+
T Consensus 85 la~~~~~~-~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKE-EKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-ccHHHHHHHHHHHHH
Confidence 44455555 555555555555443
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.30 E-value=1e-05 Score=76.71 Aligned_cols=119 Identities=14% Similarity=0.069 Sum_probs=57.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHh
Q 012442 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDST 306 (463)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 306 (463)
+.+.|++++|.+.|++..+. .|++..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 44455555555555555443 44445555555555555555555555555555543 223445555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 012442 307 HAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFH 349 (463)
Q Consensus 307 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 349 (463)
+|.+.|++++....-.+........+..+.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555544433222222222222222555555566665555
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=5.8e-06 Score=62.11 Aligned_cols=82 Identities=11% Similarity=0.039 Sum_probs=32.9
Q ss_pred CcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHH
Q 012442 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~ 276 (463)
|++++|+..|++..+..+.+...|..+..++...|++++|+..|++..+. .|++...+..+...+...|++++|+..
T Consensus 31 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~la~~~~~~g~~~~A~~~ 107 (121)
T 1hxi_A 31 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTNEHNANAALAS 107 (121)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444444444433333333344444444444444444444444443332 333333444444444444444444444
Q ss_pred HHHHh
Q 012442 277 LRVMK 281 (463)
Q Consensus 277 ~~~m~ 281 (463)
|++..
T Consensus 108 ~~~al 112 (121)
T 1hxi_A 108 LRAWL 112 (121)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.29 E-value=7.4e-07 Score=84.23 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC----------------HHHHHHHHHHHHccCCcHHHHHHHHHHh
Q 012442 146 SLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD----------------VVAVNSLLSAICRQENQTSRALEFLNRV 209 (463)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 209 (463)
....|..+...+.+.|++++|+..|++..+.. |+ ...|..+..+|.+. |++++|+..+++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~a 343 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKL-REYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 34456666667777777777777777666431 21 23444444444444 5555555555554
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHH
Q 012442 210 KKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273 (463)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a 273 (463)
.+..+.+...|..+..+|...|++++|...|++..+ +.|++..++..+...+.+.++.+++
T Consensus 344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 443334444555555555555555555555555432 2444444444444444444444443
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.27 E-value=1.1e-05 Score=60.51 Aligned_cols=91 Identities=12% Similarity=0.008 Sum_probs=45.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC
Q 012442 118 LMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN 197 (463)
Q Consensus 118 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 197 (463)
.+...+.+.|++++|+..|+...+..+.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++... |
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~-g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE-H 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-C
Confidence 344445555555555555555555555455555555555555555555555555554432 22334444444444444 5
Q ss_pred cHHHHHHHHHHhh
Q 012442 198 QTSRALEFLNRVK 210 (463)
Q Consensus 198 ~~~~a~~~~~~~~ 210 (463)
++++|+..+++..
T Consensus 100 ~~~~A~~~~~~al 112 (121)
T 1hxi_A 100 NANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
No 177
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.27 E-value=5.5e-05 Score=73.16 Aligned_cols=177 Identities=9% Similarity=-0.053 Sum_probs=148.4
Q ss_pred ccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 012442 91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGR----------FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160 (463)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~ 160 (463)
.....++|++.++.+....+-+..+|+.--.++...|+ ++++++.++.+.+.++.+..+|+.-...+.+.
T Consensus 41 ~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34455788999998888778888889888888777777 89999999999999999999999999999999
Q ss_pred C--ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCC-cHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc-------
Q 012442 161 G--KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQEN-QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKE------- 230 (463)
Q Consensus 161 g--~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 230 (463)
| +++++++.++++.+.. +-+..+|+..-.++.+. | .++++++.++++.+..+.|...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l-~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 9 6799999999999875 56788888887777787 7 899999999999887888999999888777663
Q ss_pred -------CCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHH
Q 012442 231 -------GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDE 272 (463)
Q Consensus 231 -------g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~ 272 (463)
+.++++.+.+++.... .|+|..+|+-+-..+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~---~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH---CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhh---CCCCccHHHHHHHHHhcCCCccc
Confidence 5578899999888765 78888899988888888776444
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.25 E-value=2.6e-05 Score=59.02 Aligned_cols=92 Identities=17% Similarity=0.062 Sum_probs=41.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcCH---HHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCC---HHHHHHHHHH
Q 012442 153 IFDSYCGAGKYDEAVMSFDVMSMHGVEQDV---VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD---GDSFAILLEG 226 (463)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~ 226 (463)
+...+.+.|++++|.+.|++..+.. +.+. ..+..+..++... |++++|...|+.+.+..+.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYAT-RNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3344444555555555555544321 1111 2333344444444 55555555555444322222 3444455555
Q ss_pred HHhcCCHHHHHHHHHHHHHh
Q 012442 227 WEKEGNVEEANKTFGEMVER 246 (463)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~ 246 (463)
+.+.|++++|...|+.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55555555555555555443
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.23 E-value=4.2e-05 Score=57.82 Aligned_cols=101 Identities=12% Similarity=0.014 Sum_probs=68.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---HHHHHHHH
Q 012442 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSL---PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQD---VVAVNSLL 189 (463)
Q Consensus 116 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll 189 (463)
+..+...+...|++++|...|+.+.+..+.+. ..+..+..++.+.|++++|...|++..+.. +.+ ...+..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 34455667777888888888877777665443 567777777778888888888887777643 222 45566666
Q ss_pred HHHHccCCcHHHHHHHHHHhhcCCCCCHH
Q 012442 190 SAICRQENQTSRALEFLNRVKKIVDPDGD 218 (463)
Q Consensus 190 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 218 (463)
.++... |++++|...|+.+....+.+..
T Consensus 84 ~~~~~~-g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 84 LSQYGE-GKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHCCCChH
Confidence 777777 8888888888777664433333
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.22 E-value=1.8e-05 Score=74.71 Aligned_cols=149 Identities=13% Similarity=0.030 Sum_probs=116.5
Q ss_pred chHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHh
Q 012442 95 PSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLS---------------LPTFASIFDSYCG 159 (463)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---------------~~~~~~li~~~~~ 159 (463)
++.|+..|+......+.+...|..+...+.+.|++++|+..|++..+..+.+ ..+|..+..+|.+
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444432222223345688899999999999999999999988876654 6889999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH-H
Q 012442 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEAN-K 238 (463)
Q Consensus 160 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~ 238 (463)
.|++++|+..|++.++.. +.+...|..+..+|... |++++|+..|++..+..+.+...+..+..++.+.++.+++. .
T Consensus 330 ~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998764 45688899999999999 99999999999998866777889999999999999988776 4
Q ss_pred HHHHHHH
Q 012442 239 TFGEMVE 245 (463)
Q Consensus 239 ~~~~~~~ 245 (463)
.+..|..
T Consensus 408 ~~~~~f~ 414 (457)
T 1kt0_A 408 IYANMFK 414 (457)
T ss_dssp HHHHC--
T ss_pred HHHHHHh
Confidence 5555543
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.21 E-value=5.5e-05 Score=59.52 Aligned_cols=135 Identities=10% Similarity=-0.025 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC---chHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC----CCC-CH
Q 012442 218 DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNP---EHVLAYETFLITLIRGKQVDEALKFLRVMKGEN----CFP-TL 289 (463)
Q Consensus 218 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~-~~ 289 (463)
.++..+...+...|++++|.+.+++..+...-.+ ....++..+...+...|++++|.+.+++..+.. ..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3455666667777777777777766654210001 011356666666677777777777776654321 000 02
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 012442 290 KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP----DSLTYNMIFECLIKNKRVHEVEKFFHEMI 352 (463)
Q Consensus 290 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (463)
..+..+...+...|++++|...+++.+....-.. ....+..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444555555666666666666655432211001 12234444444555555555555555443
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.20 E-value=5.1e-06 Score=78.88 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=66.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 012442 156 SYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235 (463)
Q Consensus 156 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 235 (463)
.+.+.|++++|++.|++..+.. +.+...|..+..++.+. |++++|++.+++..+..+.+...|..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445556666666666555442 23355555555555555 666666666666555444556666666666666677777
Q ss_pred HHHHHHHHHHhcCCCCchHhhHHHHHHH--HHccCCHHHHHHHHH
Q 012442 236 ANKTFGEMVERFEWNPEHVLAYETFLIT--LIRGKQVDEALKFLR 278 (463)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~~li~~--~~~~~~~~~a~~~~~ 278 (463)
|.+.|++..+. .|++...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777666554 44444455555444 566667777777666
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.19 E-value=1.2e-05 Score=63.39 Aligned_cols=24 Identities=13% Similarity=-0.105 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 012442 220 FAILLEGWEKEGNVEEANKTFGEM 243 (463)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~~ 243 (463)
+..+...+...|++++|.+.+++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334444444455555555444444
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.17 E-value=1.9e-05 Score=72.12 Aligned_cols=90 Identities=13% Similarity=0.102 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHH
Q 012442 182 VVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFL 261 (463)
Q Consensus 182 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li 261 (463)
...|..+..++.+. |++++|+..+++..+..+.+...|..+..+|...|++++|.+.|++..+. .|++...+..+.
T Consensus 273 ~~~~~nla~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKM-SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 44555566666666 66666666666666544555666666666677777777777777766554 555555666666
Q ss_pred HHHHccCCHHHHHH
Q 012442 262 ITLIRGKQVDEALK 275 (463)
Q Consensus 262 ~~~~~~~~~~~a~~ 275 (463)
..+...++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655543
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.16 E-value=2.5e-05 Score=71.41 Aligned_cols=139 Identities=12% Similarity=0.021 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 012442 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE 228 (463)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (463)
.+..+...+.+.|++++|++.|++.++. .++. ... ... +......+.+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~-~~~-------~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAA-AED-------ADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHH-SCH-------HHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccc-cCh-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777888888888888777642 0100 001 111 1111112235577888888999
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 012442 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308 (463)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 308 (463)
+.|++++|++.+++..+. .|++..+|..+..+|...|++++|++.|++..+.. +.+...+..+...+...++.+++
T Consensus 285 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEI---DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988653 77778888899999999999999999999888764 33567777777888888877776
Q ss_pred HHH
Q 012442 309 VQL 311 (463)
Q Consensus 309 ~~~ 311 (463)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 653
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.13 E-value=7.1e-06 Score=61.20 Aligned_cols=61 Identities=13% Similarity=-0.080 Sum_probs=25.7
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 254 VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM 315 (463)
Q Consensus 254 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 315 (463)
..++..+...|...|++++|+..|++..+.. +-+...+..+..++.+.|++++|...++..
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444444444444444444332 122333444444444444444444444443
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.12 E-value=9.5e-06 Score=60.47 Aligned_cols=84 Identities=13% Similarity=0.007 Sum_probs=39.7
Q ss_pred CChHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012442 161 GKYDEAVMSFDVMSMHG--VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238 (463)
Q Consensus 161 g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 238 (463)
|++++|+..|++..+.+ -+.+...+..+...+... |++++|+..|++..+..+.+..++..+..++.+.|++++|.+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL-GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555555555432 012233344444444444 555555555555444334445555555555555555555555
Q ss_pred HHHHHHH
Q 012442 239 TFGEMVE 245 (463)
Q Consensus 239 ~~~~~~~ 245 (463)
.|++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.10 E-value=4.9e-05 Score=60.27 Aligned_cols=28 Identities=11% Similarity=0.072 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 012442 148 PTFASIFDSYCGAGKYDEAVMSFDVMSM 175 (463)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (463)
..+......+.+.|++++|+..|.+.+.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~ 39 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALT 39 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455556666666666666666666553
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.10 E-value=0.00016 Score=69.86 Aligned_cols=174 Identities=7% Similarity=-0.098 Sum_probs=131.5
Q ss_pred hCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 012442 125 KNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK----------YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICR 194 (463)
Q Consensus 125 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 194 (463)
....-++|++.++.+...++.+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-.-.+.+
T Consensus 41 ~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 33445678999999999988888888887777777777 888999999988764 5567778877777777
Q ss_pred cCC--cHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHcc----
Q 012442 195 QEN--QTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEG-NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG---- 267 (463)
Q Consensus 195 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~---- 267 (463)
. + +++++++.++++.+..+.|..+|+.-...+.+.| .++++++.++++.+. .|.|..+|+.....+.+.
T Consensus 120 l-~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 120 L-PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp C-SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---TCCCHHHHHHHHHHHHHHSCCC
T ss_pred c-ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---CCCCccHHHHHHHHHHhhcccc
Confidence 7 7 6788999998888877778888888888888888 888888888888654 777888888777776653
Q ss_pred ----------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 012442 268 ----------KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLND 304 (463)
Q Consensus 268 ----------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 304 (463)
+.++++++.+++..... +-|...|..+-..+.+.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 44677777777776654 3355666666655555555
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.08 E-value=1.2e-05 Score=72.65 Aligned_cols=147 Identities=9% Similarity=-0.088 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 012442 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226 (463)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 226 (463)
...+..+...+.+.|++++|+..|++.... .|+... +... ++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~-~~~~~~~~~l~---------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLY-GKYQDMALAVK---------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCC-HHHHHHHHHHH---------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhc-ccHHHHHHHHH---------HHHHHHHHHH
Confidence 344666777777888888888888887653 343321 1222 44444332221 1356667777
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHHcCCH
Q 012442 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI-LVKLNDS 305 (463)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~g~~ 305 (463)
|.+.|++++|+..++...+. .|++..+|..+..+|...|++++|...|++..+.. +-+...+..+... ....+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777654 56566677777777777777777777777776543 1223344444433 2334556
Q ss_pred hHHHHHHHHHH
Q 012442 306 THAVQLWDIMM 316 (463)
Q Consensus 306 ~~a~~~~~~~~ 316 (463)
+.+...|..++
T Consensus 316 ~~a~~~~~~~l 326 (338)
T 2if4_A 316 QKQKEMYKGIF 326 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHHhh
Confidence 66666666643
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.08 E-value=2.6e-05 Score=61.93 Aligned_cols=95 Identities=17% Similarity=0.072 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 012442 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKED------------------GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMS 174 (463)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 174 (463)
...+......+.+.|++++|+..|...... .+.+...|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 446777888888999999999999887664 11122344444444444444444444444444
Q ss_pred hCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHh
Q 012442 175 MHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209 (463)
Q Consensus 175 ~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 209 (463)
+.. +.+...|..+..++... |++++|...|+..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~-g~~~~A~~~~~~a 123 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAA-WKLDEAEEDLKLL 123 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHH-hcHHHHHHHHHHH
Confidence 332 22333344444444444 4444444444443
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.02 E-value=2.4e-05 Score=70.58 Aligned_cols=150 Identities=9% Similarity=0.054 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012442 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (463)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 192 (463)
...|..+...+.+.|++++|...|++.....+.+. .+...|+.+++...+ . ...|..+..++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l---~-------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAV---K-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence 45678888889999999999999999877643221 122233333333222 1 12566677777
Q ss_pred HccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHH-HHccCCHH
Q 012442 193 CRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLIT-LIRGKQVD 271 (463)
Q Consensus 193 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~-~~~~~~~~ 271 (463)
.+. |++++|+..+++..+..+.+...|..+..+|...|++++|.+.|++..+ +.|++...+..+... ....+..+
T Consensus 241 ~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~---l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 241 IKL-KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK---YAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HTT-TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHH
Confidence 777 8888888888877665566777888888888888888888888887743 366666666666655 33446677
Q ss_pred HHHHHHHHHhhCC
Q 012442 272 EALKFLRVMKGEN 284 (463)
Q Consensus 272 ~a~~~~~~m~~~~ 284 (463)
++...|..|....
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 7777777776543
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.91 E-value=1.6e-05 Score=58.31 Aligned_cols=65 Identities=9% Similarity=-0.029 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012442 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176 (463)
Q Consensus 112 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (463)
+...|..+...+.+.|++++|++.|++..+..+.+...|..+..++.+.|++++|++.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45567777888888888888888888888777777778888888888888888888888888765
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.90 E-value=0.00024 Score=55.16 Aligned_cols=64 Identities=16% Similarity=0.025 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh----cCCCCchHhhH----HHHHHHHHccCCHHHHHHHHHHHhh
Q 012442 219 SFAILLEGWEKEGNVEEANKTFGEMVER----FEWNPEHVLAY----ETFLITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~p~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~ 282 (463)
.|..+..++.+.|++++|+..++...+. ..+.|++...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666666667766666666666431 23367677777 7777777777777777777777654
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.90 E-value=0.00012 Score=54.07 Aligned_cols=79 Identities=6% Similarity=-0.044 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 012442 97 SAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175 (463)
Q Consensus 97 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (463)
.|+..|+.+.+..+.+...|..+...|...|++++|+..|++..+..+.+...|..+..++...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4667777776666777888888888888888888888888888877777777888888888888888888888887764
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.84 E-value=0.0004 Score=53.94 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=12.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q 012442 399 NELLVGLRNLGRLSDVRRFAEEML 422 (463)
Q Consensus 399 ~~li~~~~~~g~~~~a~~~~~~m~ 422 (463)
.....++...|++++|+..|++..
T Consensus 106 ~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 106 YSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHCCCHHHHHHHHHHHH
Confidence 444445555555555555555443
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.77 E-value=0.00028 Score=66.60 Aligned_cols=88 Identities=16% Similarity=-0.048 Sum_probs=42.9
Q ss_pred HhcCCHHHHHHHHHHHHHh----cC-CCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhC-----C-CCCC-HHHHHHH
Q 012442 228 EKEGNVEEANKTFGEMVER----FE-WNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE-----N-CFPT-LKFFSNA 295 (463)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~----~~-~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~-~~~~~~l 295 (463)
...|++++|+.++++..+. +| -.|+...+++.|...|...|++++|+.++++..+. | --|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456666666665554432 11 12223345556666666666666666655554321 1 0111 2345555
Q ss_pred HHHHHHcCCHhHHHHHHHHH
Q 012442 296 LDILVKLNDSTHAVQLWDIM 315 (463)
Q Consensus 296 l~~~~~~g~~~~a~~~~~~~ 315 (463)
...|...|++++|..+++++
T Consensus 400 a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555555543
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=0.00014 Score=68.72 Aligned_cols=119 Identities=11% Similarity=0.025 Sum_probs=71.3
Q ss_pred CcHHHHHHHHHHhhc----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----c-CCCCchHhhHHHHHHH
Q 012442 197 NQTSRALEFLNRVKK----IVDP----DGDSFAILLEGWEKEGNVEEANKTFGEMVER----F-EWNPEHVLAYETFLIT 263 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~p~~~~~~~~li~~ 263 (463)
|++++|+.++++..+ -+.+ ...+++.|...|...|++++|..++++..+- + .-.|+...+++.|...
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 402 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLT 402 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 666666666665432 1112 2355666777777777777777766665432 1 2345455667777777
Q ss_pred HHccCCHHHHHHHHHHHhh-----CCCC-CC-HHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 264 LIRGKQVDEALKFLRVMKG-----ENCF-PT-LKFFSNALDILVKLNDSTHAVQLWDIM 315 (463)
Q Consensus 264 ~~~~~~~~~a~~~~~~m~~-----~~~~-~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 315 (463)
|...|++++|+.++++..+ .|-. |+ ..+.+.+-.++...+.++.|+.+|..+
T Consensus 403 ~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 403 NWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776543 2311 11 234455566666777777777777774
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.75 E-value=0.0002 Score=52.89 Aligned_cols=80 Identities=13% Similarity=0.057 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHh
Q 012442 130 EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRV 209 (463)
Q Consensus 130 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 209 (463)
+.|+..|++..+..+.+...+..+...|...|++++|+..|++..+.. +.+...|..+..++... |++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQ-GDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 356677777777776677777788888888888888888888777653 34456677777777777 7777777777775
Q ss_pred hc
Q 012442 210 KK 211 (463)
Q Consensus 210 ~~ 211 (463)
..
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00017 Score=52.65 Aligned_cols=66 Identities=14% Similarity=0.162 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 012442 216 DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (463)
Q Consensus 216 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (463)
+...+..+...+...|++++|.+.|++..+. .|.+...|..+..++...|++++|++.|++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3445566666666666777777666666554 45555666666666666666666666666666543
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.71 E-value=0.0012 Score=50.56 Aligned_cols=85 Identities=5% Similarity=-0.072 Sum_probs=42.3
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc---
Q 012442 335 LIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD----ADEPEIAIEIWNYILENGILPLEASANELLVGLRN--- 407 (463)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~--- 407 (463)
|...+.+++|.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...+..|...|..
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKG 108 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred HHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCC
Confidence 333344444555555555443 34444444444444 455555555555555543 23344444445544
Q ss_pred -CCCHHHHHHHHHHHHHCC
Q 012442 408 -LGRLSDVRRFAEEMLNRR 425 (463)
Q Consensus 408 -~g~~~~a~~~~~~m~~~~ 425 (463)
.+++++|.++|++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 455555555555555554
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.69 E-value=0.00048 Score=47.99 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 012442 112 SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSA 191 (463)
Q Consensus 112 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 191 (463)
+...|..+...+...|++++|...|++..+..+.+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345666777777777777777777777777666667777777777777777777777777776542 2334444444444
Q ss_pred H
Q 012442 192 I 192 (463)
Q Consensus 192 ~ 192 (463)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.68 E-value=0.0004 Score=48.37 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 012442 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (463)
.+..+...+...|++++|...|++..+. .|.+...+..+...+...|++++|...|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3344444444444444444444444432 233334444444444444444444444444444
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.67 E-value=0.00019 Score=51.48 Aligned_cols=65 Identities=23% Similarity=0.154 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 012442 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 215 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (463)
.+...+..+...|.+.|++++|...|++..+. .|++..+|..+..+|...|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVET---DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555666666666666666666665544 444455555666666666666666666655543
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.65 E-value=0.0019 Score=49.43 Aligned_cols=73 Identities=11% Similarity=0.036 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHhH
Q 012442 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVK----LNDSTH 307 (463)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~ 307 (463)
++++|.+.|++..+. | .| + .. +...|...+.+++|++.|++..+.| +...+..|...|.. .+++++
T Consensus 10 d~~~A~~~~~~aa~~-g-~~-~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EM-F--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CT-T--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CHHHHHHHHHHHHcC-C-CH-h--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 455555555555443 2 11 1 22 4444444445555555555554443 33444444444444 444444
Q ss_pred HHHHHHH
Q 012442 308 AVQLWDI 314 (463)
Q Consensus 308 a~~~~~~ 314 (463)
|.++|++
T Consensus 80 A~~~~~~ 86 (138)
T 1klx_A 80 AAQYYSK 86 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.58 E-value=0.00017 Score=55.87 Aligned_cols=98 Identities=11% Similarity=-0.069 Sum_probs=78.9
Q ss_pred CCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCh----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-
Q 012442 93 DSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRF----------EQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG- 161 (463)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g- 161 (463)
+.+++|++.++.+.+..+.+...|+.+..++...+++ ++|+..|++..+.++.+..+|..+..+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 4567888888888777788999999999999888775 49999999999988888889999999998774
Q ss_pred ----------ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 012442 162 ----------KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAI 192 (463)
Q Consensus 162 ----------~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 192 (463)
++++|++.|++.++. .|+...|...+...
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT 134 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 788899988888875 67766665555443
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.58 E-value=0.00014 Score=56.37 Aligned_cols=96 Identities=16% Similarity=0.064 Sum_probs=58.9
Q ss_pred CcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHc
Q 012442 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGN----------VEEANKTFGEMVERFEWNPEHVLAYETFLITLIR 266 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~ 266 (463)
+.+++|.+.++...+..+.+...|+.+..++...++ +++|+..|++..+- .|++..+|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHH
Confidence 445556666655555445556666666666655554 34777777777554 67666777777777776
Q ss_pred cC-----------CHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012442 267 GK-----------QVDEALKFLRVMKGENCFPTLKFFSNALD 297 (463)
Q Consensus 267 ~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 297 (463)
.| ++++|++.|++..+.. |+...|...+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 53 6777777777776643 55544444433
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.57 E-value=0.00045 Score=49.50 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 012442 110 RLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175 (463)
Q Consensus 110 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 175 (463)
+.+...|..+...|.+.|++++|+..|++..+.++.+...|..+..+|...|++++|++.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556778888888888888888888888888888777777888888888888888888888888764
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.22 E-value=0.011 Score=60.21 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=51.8
Q ss_pred HhCCChHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHH
Q 012442 124 GKNGRFEQMWN-AVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRA 202 (463)
Q Consensus 124 ~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a 202 (463)
...+++++|.+ ++..+ ++......++..+.+.|..++|.++.+.-. . -....... |+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~i-----~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-------~-----~f~~~l~~-~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV-----EGKDSLTKIARFLEGQEYYEEALNISPDQD-------Q-----KFELALKV-GQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC-----CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH-------H-----HHHHHHHH-TCHHHH
T ss_pred HHhCCHHHHHHHHHhcC-----CchHHHHHHHHHHHhCCChHHheecCCCcc-------h-----heehhhhc-CCHHHH
Confidence 34566666655 33111 112223556666666666666665542111 0 01222334 666666
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012442 203 LEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243 (463)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 243 (463)
.++.+.+ .+...|..+...+.+.|+++.|.+.|..+
T Consensus 672 ~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 672 RDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 6665443 34566666777777777777777666655
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.11 E-value=0.0072 Score=53.89 Aligned_cols=64 Identities=13% Similarity=-0.000 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 323 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|+.++|.+.+++...
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345555555554555566666666666666653 4555555555566666666666666666665
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.07 E-value=0.024 Score=50.54 Aligned_cols=146 Identities=10% Similarity=0.057 Sum_probs=91.6
Q ss_pred CCCCHHHHHHHHHHHH--hc---CCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHcc---C-----CHHHHHHHHHH
Q 012442 213 VDPDGDSFAILLEGWE--KE---GNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRG---K-----QVDEALKFLRV 279 (463)
Q Consensus 213 ~~~~~~~~~~l~~~~~--~~---g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~---~-----~~~~a~~~~~~ 279 (463)
.+.+...|...+.+.. .. .+..+|..+|++..+. .|+....|..+..+|... + ........++.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3445555555554433 22 2346677777777665 665555555444444311 1 11111112222
Q ss_pred Hhh-CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 012442 280 MKG-ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQP 358 (463)
Q Consensus 280 m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (463)
... ...+.+..+|..+...+...|+++.|...++++.... |+...|..+...+.-.|++++|.+.|++.... .|
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 111 1125567788888777777899999999999976653 67777777788888899999999999998887 56
Q ss_pred CHHHHHHH
Q 012442 359 TPLNCATA 366 (463)
Q Consensus 359 ~~~~~~~l 366 (463)
...+|...
T Consensus 342 ~~~t~~~~ 349 (372)
T 3ly7_A 342 GANTLYWI 349 (372)
T ss_dssp SHHHHHHH
T ss_pred CcChHHHH
Confidence 77776533
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.98 E-value=0.0023 Score=59.34 Aligned_cols=85 Identities=9% Similarity=-0.023 Sum_probs=51.7
Q ss_pred CcHHHHHHHHHHhhc----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----cC-CCCchHhhHHHHHHH
Q 012442 197 NQTSRALEFLNRVKK----IVDP----DGDSFAILLEGWEKEGNVEEANKTFGEMVER----FE-WNPEHVLAYETFLIT 263 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~p~~~~~~~~li~~ 263 (463)
|++++|+.++++..+ -+.| ...+++.|..+|...|++++|+.++++..+- +| -.|+...+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 667777777766432 1222 2356667777777777777777777665432 12 234344566666777
Q ss_pred HHccCCHHHHHHHHHHHh
Q 012442 264 LIRGKQVDEALKFLRVMK 281 (463)
Q Consensus 264 ~~~~~~~~~a~~~~~~m~ 281 (463)
|...|++++|+.++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 777777777776666654
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.98 E-value=0.0021 Score=45.57 Aligned_cols=49 Identities=16% Similarity=0.288 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012442 197 NQTSRALEFLNRVKKIVDPDGD-SFAILLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
|++++|+..|++..+..+.+.. .+..+..+|...|++++|.+.|++..+
T Consensus 14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555444443333444 444555555555555555555555544
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.89 E-value=0.015 Score=40.71 Aligned_cols=68 Identities=6% Similarity=-0.035 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 012442 110 RLSPYAWNLMVDVLGKNGR---FEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHG 177 (463)
Q Consensus 110 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 177 (463)
+.|+..+..+..++...++ .++|..+|++..+.++.+......+...+.+.|++++|+..|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5677788888888765554 7899999999999988889999999999999999999999999998763
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.88 E-value=0.0044 Score=57.47 Aligned_cols=84 Identities=13% Similarity=0.010 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHhhc----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----cCCCCchHhhHHHHHHH
Q 012442 197 NQTSRALEFLNRVKK----IVDP----DGDSFAILLEGWEKEGNVEEANKTFGEMVER-----FEWNPEHVLAYETFLIT 263 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~p~~~~~~~~li~~ 263 (463)
|++++|+.++++..+ -+.+ ...+++.+...|...|++++|+.++++...- ....|+...+++.|...
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~ 380 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKL 380 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHH
Confidence 555555555555432 1111 1234455555555555555555555544321 11223233444555555
Q ss_pred HHccCCHHHHHHHHHHH
Q 012442 264 LIRGKQVDEALKFLRVM 280 (463)
Q Consensus 264 ~~~~~~~~~a~~~~~~m 280 (463)
|...|++++|+.++++.
T Consensus 381 ~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 381 QLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 55555555555555443
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.85 E-value=0.01 Score=60.39 Aligned_cols=28 Identities=4% Similarity=0.096 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 012442 324 DSLTYNMIFECLIKNKRVHEVEKFFHEM 351 (463)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~ 351 (463)
+...|..+...+.+.++++.|.+.|.++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3444555555555555555555555544
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.72 E-value=0.0067 Score=56.24 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHH
Q 012442 327 TYNMIFECLIKNKRVHEVEKFFHEMI 352 (463)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (463)
+++.|...|...|++++|..+|++..
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 44555555555555555555555544
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.70 E-value=0.016 Score=40.53 Aligned_cols=68 Identities=10% Similarity=0.030 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 012442 214 DPDGDSFAILLEGWEKEGN---VEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGEN 284 (463)
Q Consensus 214 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 284 (463)
+.|...+..+..++...++ .++|.+++++..+. .|++..+...+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL---EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4555666666666654433 57777777777654 66666777777777777777777777777776654
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.54 E-value=0.017 Score=40.65 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=45.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012442 119 MVDVLGKNGRFEQMWNAVRVMKEDGVLSLP-TFASIFDSYCGAGKYDEAVMSFDVMSMH 176 (463)
Q Consensus 119 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (463)
....+.+.|++++|...|+...+..+.+.. .+..+..++...|++++|++.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445566778888888888888777776777 7888888888888888888888887765
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.53 E-value=0.28 Score=41.96 Aligned_cols=84 Identities=12% Similarity=0.054 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCC-CCH
Q 012442 306 THAVQLWDIMMVFHGAFPD---SLTYNMIFECLIKN-----KRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDA-DEP 376 (463)
Q Consensus 306 ~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 376 (463)
..|...+++++. +.|+ -..|..|...|.+. |+.++|.+.|++.++.+-.-+..++......++.. |+.
T Consensus 180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 445555555444 2333 34566666666663 66666666666666653111255555666666663 666
Q ss_pred HHHHHHHHHHHHcCCC
Q 012442 377 EIAIEIWNYILENGIL 392 (463)
Q Consensus 377 ~~a~~~~~~~~~~~~~ 392 (463)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 6666666666664444
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.48 E-value=0.014 Score=54.14 Aligned_cols=92 Identities=10% Similarity=0.078 Sum_probs=72.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC---CCc----CHHHHHHHHHHHHccCCcHHHHHHHHHHhhc----CC----CCCH
Q 012442 153 IFDSYCGAGKYDEAVMSFDVMSMHG---VEQ----DVVAVNSLLSAICRQENQTSRALEFLNRVKK----IV----DPDG 217 (463)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~g---~~~----~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~----~~----~~~~ 217 (463)
.+..+.+.|++++|+.++++.++.. +.| ...+++.+..+|... |++++|+.++++... -. +...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~-g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL-GLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 3556778899999999999987532 222 256788899999999 999999999998654 12 2234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012442 218 DSFAILLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 218 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
.+++.|...|...|++++|+.++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6789999999999999999999987754
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.36 E-value=0.05 Score=41.62 Aligned_cols=82 Identities=15% Similarity=0.117 Sum_probs=58.1
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHcCCCHHHHH
Q 012442 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD---EPEIAIEIWNYILENGILP--LEASANELLVGLRNLGRLSDVR 415 (463)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~ 415 (463)
...+.+-|.+..+.| .++..+...+..++++.+ +.+++..++++..+.+ .| +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 445666666666666 467777777778888877 5668888888877754 23 3445555666778888888888
Q ss_pred HHHHHHHHC
Q 012442 416 RFAEEMLNR 424 (463)
Q Consensus 416 ~~~~~m~~~ 424 (463)
++++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888765
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.32 E-value=0.2 Score=36.98 Aligned_cols=140 Identities=15% Similarity=0.119 Sum_probs=78.4
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhH
Q 012442 228 EKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTH 307 (463)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 307 (463)
.-.|..++..++..+.... . +..-||-+|--....-+-+-..++++..-+. .|. ..+|++..
T Consensus 18 ildG~v~qGveii~k~~~s---s--ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKr 79 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---S--TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKS 79 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---S--CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHH
T ss_pred HHhhhHHHHHHHHHHHcCC---C--CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHH
Confidence 3457777777777666554 1 3444555555555555555555555554332 111 12333333
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 012442 308 AVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387 (463)
Q Consensus 308 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 387 (463)
....+-.+ ..+......-++.+...|+-++-.+++..+.... +|++...-.+..+|.+.|+..+|.+++.++.
T Consensus 80 Vi~C~~~~------n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 80 VVECGVIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHh------cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 33333321 1233445555666666777777777777753332 6666777777777777777777777777777
Q ss_pred HcCCC
Q 012442 388 ENGIL 392 (463)
Q Consensus 388 ~~~~~ 392 (463)
+.|++
T Consensus 153 ~kG~k 157 (172)
T 1wy6_A 153 KKGEK 157 (172)
T ss_dssp HTTCH
T ss_pred HhhhH
Confidence 76654
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.31 E-value=0.063 Score=41.07 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=29.1
Q ss_pred cCHHHHHHHHHHHHccCC---cHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012442 180 QDVVAVNSLLSAICRQEN---QTSRALEFLNRVKKIVDP--DGDSFAILLEGWEKEGNVEEANKTFGEMVER 246 (463)
Q Consensus 180 ~~~~~~~~ll~~~~~~~~---~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 246 (463)
++..+...+..++++. + +.++++.+++.+.+...| +...+-.+.-+|.+.|++++|.+.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S-~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRS-KYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344433344444443 3 334444444444332112 2333344444455555555555555555443
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.23 Score=39.04 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 012442 149 TFASIFDSYCGAGKYDEAVMSFD 171 (463)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~ 171 (463)
.|..|.....+.|+++-|++.|.
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHH
Confidence 33333333333333333333333
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.14 E-value=0.087 Score=45.08 Aligned_cols=94 Identities=10% Similarity=-0.082 Sum_probs=75.1
Q ss_pred HhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcC-CCH
Q 012442 341 VHEVEKFFHEMIKNEWQPT---PLNCATAITMLLDA-----DEPEIAIEIWNYILENGILPLEASANELLVGLRNL-GRL 411 (463)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~ 411 (463)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++..+.+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 56788888888876 355 56888999999884 99999999999999954322467888888888885 999
Q ss_pred HHHHHHHHHHHHCCCc--cCHHHHHHH
Q 012442 412 SDVRRFAEEMLNRRIL--IYEVTMHKL 436 (463)
Q Consensus 412 ~~a~~~~~~m~~~~~~--~~~~~~~~l 436 (463)
+++.+.+++....... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999998877 775555544
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.01 E-value=0.1 Score=37.20 Aligned_cols=62 Identities=3% Similarity=-0.020 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 012442 292 FSNALDILVKLNDSTHAVQLWDIMMVFHG-----AFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353 (463)
Q Consensus 292 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (463)
+..+...+.+.|+++.|...|+.++.... -......+..|..++.+.|++++|..+++++.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444444444444444444444333210 012233344444444444444444444444443
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.97 E-value=0.082 Score=37.69 Aligned_cols=66 Identities=8% Similarity=-0.031 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012442 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED-------GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH 176 (463)
Q Consensus 111 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (463)
.+...+..|...+.+.|++..|...|+...+. +.....++..+..++.+.|+++.|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45556677778888888888888888776553 2344667777778888888888888888777754
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.63 E-value=2 Score=42.56 Aligned_cols=89 Identities=10% Similarity=-0.070 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCC---------CHHHHHHHHHHHHHCC-
Q 012442 356 WQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLG---------RLSDVRRFAEEMLNRR- 425 (463)
Q Consensus 356 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~~- 425 (463)
.+-+..=|..|.....+.+++++|.+.|+...... -+...+..|+..|.+.+ +.+.++.+.-++..-+
T Consensus 609 ~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R--Fs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~~ 686 (754)
T 4gns_B 609 EKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVAR--FDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDC 686 (754)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS--CCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHhh
Confidence 34466668899999899999999999999988744 57789999999998877 7777777666664211
Q ss_pred ---CccCHHHHHHHHHHHHHhcch
Q 012442 426 ---ILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 426 ---~~~~~~~~~~ll~~~~~~g~~ 446 (463)
...+......|.+.+.+.|-.
T Consensus 687 RwY~efs~~l~~~l~kLi~~~G~~ 710 (754)
T 4gns_B 687 RYYNYCQIFNLQLLEKLCNELGTH 710 (754)
T ss_dssp HTTBCCCHHHHHHHHHHHHHHCHH
T ss_pred hcccccCHHHHHHHHHHHHHhChH
Confidence 124556667777777777766
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.66 Score=36.43 Aligned_cols=127 Identities=12% Similarity=0.118 Sum_probs=88.9
Q ss_pred HhccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHH
Q 012442 89 QLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM 168 (463)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (463)
....|+.+.|.++.+.+ .+...|..|.....+.|+++-|.+.|..... +..+.-.|.-.|+.+.-.+
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHH
Confidence 34679999999998865 4688999999999999999999999998653 6677777788888888777
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012442 169 SFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEM 243 (463)
Q Consensus 169 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 243 (463)
+-+.....| -++.....+... |+++++.++|.+..+ |..-.-..-..|..+.|.++.+++
T Consensus 82 la~iA~~~g------~~n~af~~~l~l-Gdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYN-NSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHH-TCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHc-CCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 766666554 234444445556 888888888876543 111111112245566666666554
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.45 E-value=0.25 Score=36.33 Aligned_cols=85 Identities=14% Similarity=0.091 Sum_probs=59.8
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCCC--ChhhHHHHHHHHHcCCCHH
Q 012442 338 NKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEI---AIEIWNYILENGILP--LEASANELLVGLRNLGRLS 412 (463)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~ 412 (463)
......+.+-|.+....| .++..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 344556666666666656 4777777778888888877666 778888877654 22 3334445566888999999
Q ss_pred HHHHHHHHHHHC
Q 012442 413 DVRRFAEEMLNR 424 (463)
Q Consensus 413 ~a~~~~~~m~~~ 424 (463)
+|.++++.+.+.
T Consensus 92 ~A~~~~~~lL~~ 103 (126)
T 1nzn_A 92 KALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999888765
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.27 E-value=0.24 Score=37.49 Aligned_cols=110 Identities=10% Similarity=0.071 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHcCCH------hHHHHHHHHHHHCCCCCCHHH----H------HHHHHHHhCCCCHHHHHHHHHHHH
Q 012442 324 DSLTYNMIFECLIKNKRV------HEVEKFFHEMIKNEWQPTPLN----C------ATAITMLLDADEPEIAIEIWNYIL 387 (463)
Q Consensus 324 ~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~----~------~~li~~~~~~g~~~~a~~~~~~~~ 387 (463)
|..+|-..+...-+.|+. ++..++|++.... ++|+... | -++. ...+++++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~---~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAEL---KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHH---HHHHCGGGCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHH
Confidence 455566666655555666 6666666666653 3443211 0 0111 12267777788887776
Q ss_pred HcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 012442 388 ENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKA 439 (463)
Q Consensus 388 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 439 (463)
+.+-.- ...|-....--.+.|+.+.|.+++.+....+.+|. ..+...++.
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~n 137 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALRN 137 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHHh
Confidence 542222 55666666666777888888888888777665433 444444443
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.99 E-value=3.6 Score=41.73 Aligned_cols=259 Identities=9% Similarity=-0.009 Sum_probs=137.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCC--------CCHHHHHH
Q 012442 153 IFDSYCGAGKYDEAVMSFDVMSMHG--VEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVD--------PDGDSFAI 222 (463)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~ 222 (463)
.--+....|+.++++.+++.....+ -.+....-..+.-+.... |..+++..++........ +....-..
T Consensus 380 aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~a-g~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAa 458 (963)
T 4ady_A 380 ASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYA-GFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGAS 458 (963)
T ss_dssp HHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHH
T ss_pred HHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHcCccccccccccHHHHHHHH
Confidence 3445677888888888887765421 012222223333344455 555566666555333111 11222223
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHhcCCCCchH--hhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-
Q 012442 223 LLEGWEKEGN-VEEANKTFGEMVERFEWNPEHV--LAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDI- 298 (463)
Q Consensus 223 l~~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~- 298 (463)
+.-+++-.|. -+++.+.+..+... ..... .+-..|...++-.|+.+....++..+.+.. +..+...+..+
T Consensus 459 LGLGla~~GS~~eev~e~L~~~L~d---d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgL 532 (963)
T 4ady_A 459 LGIGLAAMGSANIEVYEALKEVLYN---DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGL 532 (963)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHT---CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHhc---CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHH
Confidence 3333333332 23555655555543 11011 122233444556678777777777776542 33333333333
Q ss_pred -HHHcCCHhHHHHHHHHHHHhcCCCCCHHHHH---HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCC
Q 012442 299 -LVKLNDSTHAVQLWDIMMVFHGAFPDSLTYN---MIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD 374 (463)
Q Consensus 299 -~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 374 (463)
+...|+.+.+..+.+.+.. . ..|. .-|. ++.-+|+..|+.....++++.+.+.. ..+......+.-++...|
T Consensus 533 Gll~~g~~e~~~~li~~L~~-~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLA-S-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHH-C-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSS
T ss_pred HhhhCCChHHHHHHHHHHHh-C-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccC
Confidence 4467888888888887433 1 1222 2232 33445677888877777888888753 334444444455666677
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCH-HHHHHHHHHHHH
Q 012442 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRL-SDVRRFAEEMLN 423 (463)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 423 (463)
+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++..++..+..
T Consensus 609 ~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 609 DYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7777777776665543 44444334444455545443 567778877753
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.96 E-value=0.77 Score=33.99 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 012442 292 FSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355 (463)
Q Consensus 292 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 355 (463)
+...++.....|+.+.-.+++..+.. ..+|+....-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33344444444444444444444211 223344444444444555555555555555544444
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.50 E-value=0.6 Score=35.33 Aligned_cols=51 Identities=4% Similarity=0.080 Sum_probs=24.9
Q ss_pred CCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 012442 303 NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355 (463)
Q Consensus 303 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 355 (463)
+++++|.++|+.+... .+-=...|....+.-.+.|++..|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~--hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARAN--CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHH--CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 4555555555553332 11114444444444455566666666666665555
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.39 E-value=1.6e-05 Score=72.29 Aligned_cols=295 Identities=11% Similarity=0.096 Sum_probs=194.0
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 012442 111 LSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLS 190 (463)
Q Consensus 111 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 190 (463)
..+..|..|..+..+.+++.+|++.|-+ .. |+..|..+|....+.|.+++-.+.+....+. ..+...=+.|+-
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK--AD---DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC--CS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh--CC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 4456789999999999998888766532 22 3444888999999999999999888777655 333445567888
Q ss_pred HHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCH
Q 012442 191 AICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270 (463)
Q Consensus 191 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 270 (463)
+|++. ++..+..+++ ..||..-...+.+-|...|.++.|.-+|..+. -|..|..++.+.|++
T Consensus 125 ayAk~-~rL~elEefl------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----------N~akLAstLV~L~~y 186 (624)
T 3lvg_A 125 ALAKT-NRLAELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHLGEY 186 (624)
T ss_dssp HHHTS-CSSSTTTSTT------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----------CCTTTSSSSSSCSGG
T ss_pred HHHhh-CcHHHHHHHH------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----------cHHHHHHHHHHHHHH
Confidence 99998 7755433332 33777777788888888999888877765442 355556677788888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 271 DEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHE 350 (463)
Q Consensus 271 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (463)
.+|.+.-+ +. -++.||..+-.+|...+.+.-|...--.+... +| ....++..|-..|.+++-..+++.
T Consensus 187 q~AVdaAr---KA---ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh----ad--eL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 187 QAAVDGAR---KA---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH----AD--ELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp GSSTTTTT---TC---CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC----SS--CCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHHHH---hc---CChhHHHHHHHHHhCchHHHHHHHhcchhccc----HH--HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 87765443 22 25678888889999999888776665443221 21 233456678888999998888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCC------CChhhHHHHHHHHHcCCCHHHHHHH------
Q 012442 351 MIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE-NGIL------PLEASANELLVGLRNLGRLSDVRRF------ 417 (463)
Q Consensus 351 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~------p~~~~~~~li~~~~~~g~~~~a~~~------ 417 (463)
-.... +....+|+-|.-.|++- +.++..+.++.... .+++ -....|.-++-.|.+-.+++.|...
T Consensus 255 glglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~ 332 (624)
T 3lvg_A 255 ALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT 332 (624)
T ss_dssp HTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHH
T ss_pred HhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCCh
Confidence 87554 66788888888888875 44444444332221 1111 1335777777778877777766421
Q ss_pred --HHHHHHCCC---ccCHHHHHHHHHHHHHhc
Q 012442 418 --AEEMLNRRI---LIYEVTMHKLKKAFYNES 444 (463)
Q Consensus 418 --~~~m~~~~~---~~~~~~~~~ll~~~~~~g 444 (463)
|++..-+.+ ..+...|-..|+-|....
T Consensus 333 ~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~ 364 (624)
T 3lvg_A 333 DAWKEGQFKDIITKVANVELYYRAIQFYLEFK 364 (624)
T ss_dssp HHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSC
T ss_pred hhccHHHHHHHHHHcchHHHHHHHHHHHHHhC
Confidence 111111111 245566666666665554
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.25 E-value=3.4 Score=38.28 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=27.9
Q ss_pred CChHHHHHHHHHHHhC-----CCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc
Q 012442 161 GKYDEAVMSFDVMSMH-----GVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK 211 (463)
Q Consensus 161 g~~~~A~~~~~~m~~~-----g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 211 (463)
|+++.|++.+-.+.+. ...........++..|... ++++...+.+..+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~-~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASR-NKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHH
Confidence 5666666665554421 1233455556666666666 666666665555544
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.06 E-value=0.27 Score=44.84 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc------CCCCCHHHH
Q 012442 151 ASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK------IVDPDGDSF 220 (463)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~ 220 (463)
..++..+...|++++|...+..+.... +-+...|..+|.++.+. |+..+|++.|+...+ |+.|...+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~-Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLS-DRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 334444555555555555555554332 33444555555555555 555555555554322 555555443
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.87 E-value=4.1 Score=37.77 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCc--hHhhHHHHHHHHHccCCHHHHHHHHHHHhh----CCCCCCH--H
Q 012442 220 FAILLEGWEKEGNVEEANKTFGEMVERF-EWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKG----ENCFPTL--K 290 (463)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~--~ 290 (463)
...|...|...|++.+|.+++.++.... +.... -...+...+..|...+++..|..++.+... ....|+. .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 3456777777777777777777765431 21110 123555666777777777777777776532 2212221 3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHhc
Q 012442 291 FFSNALDILVKLNDSTHAVQLWDIMMVFH 319 (463)
Q Consensus 291 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 319 (463)
.+...+..+...+++.+|.+.|.++....
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 45556666677777777777776654433
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.66 E-value=0.56 Score=34.42 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 012442 221 AILLEGWEKEGNVEEANKTFGEMVER 246 (463)
Q Consensus 221 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 246 (463)
-.|.-++.+.|++++|.+.++.+.+.
T Consensus 78 Y~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 78 FYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33444555555555555555555443
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.52 E-value=3.4 Score=43.65 Aligned_cols=190 Identities=11% Similarity=0.002 Sum_probs=118.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCC------------------
Q 012442 260 FLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA------------------ 321 (463)
Q Consensus 260 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~------------------ 321 (463)
++..+.+.+.++.+.++.... +-+....-.+..+|...|++++|.+.|.+. ..|+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka--a~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH--hhhhcccchhhhhhcccccccc
Confidence 444555556666665544332 223444445667889999999999999874 1111
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 012442 322 -----FPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP----LNCATAITMLLDADEPEIAIEIWNYILENGIL 392 (463)
Q Consensus 322 -----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (463)
..-..-|..++..+.+.+.++.+.++-...++..-..+. ..|..+.+++...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 112235777888888999999999888887764322222 2578889999999999999999887776443
Q ss_pred CChhhHHHHHHHHHcCCCHHH------------HHHHHHHHH-HC-CCccCHHHHHHHHHHHHHhcch--hhhHHHHHHH
Q 012442 393 PLEASANELLVGLRNLGRLSD------------VRRFAEEML-NR-RILIYEVTMHKLKKAFYNESRS--MRDIFDSLER 456 (463)
Q Consensus 393 p~~~~~~~li~~~~~~g~~~~------------a~~~~~~m~-~~-~~~~~~~~~~~ll~~~~~~g~~--a~~~~~~~~~ 456 (463)
-..+...|+..+++.|..+. ..+++..-- .. .+...+.-|..|-......|++ |-.+..+-..
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 34577777777776655444 444443221 11 1122224567777777778877 4444444443
Q ss_pred HH
Q 012442 457 RC 458 (463)
Q Consensus 457 ~~ 458 (463)
++
T Consensus 1049 RL 1050 (1139)
T 4fhn_B 1049 RY 1050 (1139)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.48 E-value=3.1 Score=43.98 Aligned_cols=58 Identities=12% Similarity=0.030 Sum_probs=28.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTL----KFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 257 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
|..++..+-+.+.++.+.++-....+...+-+. ..|..+.+.+...|++++|...+-.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 455555555555555555555444332211111 1345555555555555555555544
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.17 E-value=0.61 Score=32.36 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 012442 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224 (463)
Q Consensus 162 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 224 (463)
+.-+..+-++.+....+.|+.....+.+++|-+. +++..|.++|+.++.+......+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRv-ND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRL-NDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 4556777777777777788888888888888888 8888888888887764444444555544
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.12 E-value=0.48 Score=43.12 Aligned_cols=71 Identities=15% Similarity=0.017 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCCCChhhHH
Q 012442 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE-----NGILPLEASAN 399 (463)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~ 399 (463)
...++..+...|+++++...+..+.... +.+...+..+|.+|.+.|+..+|++.|+.+.+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4456667777888888888888877765 67888888888888888888888888877653 57887765443
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.85 E-value=1.2 Score=44.01 Aligned_cols=129 Identities=9% Similarity=0.025 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHhcCC-hHHHHHHHHHHHhC------CCCc-CHHH
Q 012442 115 AWNLMVDVLGKNGR-FEQMWNAVRVMKEDGVLSLPTFA-SIFDSYCGAGK-YDEAVMSFDVMSMH------GVEQ-DVVA 184 (463)
Q Consensus 115 ~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~-~li~~~~~~g~-~~~A~~~~~~m~~~------g~~~-~~~~ 184 (463)
.-..++..+...++ .+.|..+|+++....+.....+. .++..+.+.++ --+|.+++.+..+. ...+ +...
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34566666777777 58899999999888765433333 33333333332 22355555444321 1111 1110
Q ss_pred -----H-HHHH----HHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012442 185 -----V-NSLL----SAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244 (463)
Q Consensus 185 -----~-~~ll----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (463)
+ ..|+ ..+... |+++.|+++-++...-.+.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K-~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNR-GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhcc-CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 0 1123 234445 999999999999888777788999999999999999999999988874
No 246
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.11 E-value=8.5 Score=34.78 Aligned_cols=293 Identities=10% Similarity=0.023 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CC---CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCcCHHHH-
Q 012442 113 PYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG--VL---SLPTFASIFDSYCGAG-KYDEAVMSFDVMSMHGVEQDVVAV- 185 (463)
Q Consensus 113 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~- 185 (463)
..+...|...|.+.|+.++..+++.....-- ++ .......++..+.... ..+.-.++..+..+.. .-+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3566778888999999999888887764422 11 3445677788777653 3444445554444321 1222233
Q ss_pred -----HHHHHHHHccCCcHHHHHHHHHHhhcCCCC-C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCC-c
Q 012442 186 -----NSLLSAICRQENQTSRALEFLNRVKKIVDP-D-----GDSFAILLEGWEKEGNVEEANKTFGEMVERF-EWNP-E 252 (463)
Q Consensus 186 -----~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~p-~ 252 (463)
.-+...|... |++.+|.+++..+.+.++. | ..++..-+..|...+++.++...+....... .+.+ +
T Consensus 98 r~~l~~kL~~l~~~~-~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 98 RQSLEARLIALYFDT-ALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 1466777777 8888888888887662111 1 2345556777888888888888888776532 1212 1
Q ss_pred hHhhH--HHHHHHHH-ccCCHHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCC
Q 012442 253 HVLAY--ETFLITLI-RGKQVDEALKFLRVMKGENCFPTL------KFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFP 323 (463)
Q Consensus 253 ~~~~~--~~li~~~~-~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 323 (463)
..... ..-...+. ..++|..|...|-+..+.--..+. ..|..+ +-.-.++..+-..++..=....-..|
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL--~aLl~~~r~el~~~l~~~~~~~~~~p 254 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL--CKIMLGQSDDVNQLVSGKLAITYSGR 254 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HHHHTTCGGGHHHHHHSHHHHTTCSH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH--HHHHcCCHHHHHHHhccccccccCCc
Confidence 11111 11122344 678888888777765321101111 112111 11222333333333321011111234
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CCCChhhH
Q 012442 324 DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG-----ILPLEASA 398 (463)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~ 398 (463)
....+..++.+| ..+++.+...++..... .+..|...... ...+++.+.+++ .+-...++
T Consensus 255 ei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h-------------~~~L~~~Ir~~~L~~i~~pYsrIsl 319 (394)
T 3txn_A 255 DIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAH-------------LGTLYDTMLEQNLCRIIEPYSRVQV 319 (394)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHH-------------HHHHHHHHHHHHHHHHHTTCSEEEH
T ss_pred cHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHH-------------HHHHHHHHHHHHHHHHhHhhceeeH
Confidence 554555555543 44566666665555432 23444432111 112222222211 12244566
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 012442 399 NELLVGLRNLGRLSDVRRFAEEMLNRRI 426 (463)
Q Consensus 399 ~~li~~~~~~g~~~~a~~~~~~m~~~~~ 426 (463)
..+...+.- ..+++...+-+|...|.
T Consensus 320 ~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 320 AHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 666665543 67889999999887653
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.04 E-value=1.3 Score=32.63 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 012442 162 KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILL 224 (463)
Q Consensus 162 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 224 (463)
|.-+..+-++.+....+.|+.....+.+++|-+. +|+..|.++|+.++.+..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRv-NDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRL-NDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3445666777777777788888888888888888 8888888888887775544444555544
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.59 E-value=2.2 Score=32.94 Aligned_cols=113 Identities=5% Similarity=-0.020 Sum_probs=54.7
Q ss_pred HHHHHHccCCcHHHHHHHHHHhhc--CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHH
Q 012442 188 LLSAICRQENQTSRALEFLNRVKK--IVDPDG-------DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE 258 (463)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 258 (463)
-+..+... +.++.|+-+.+.+.. +..++. .++..+.+++...|++..|...|++..+.....+.+..++.
T Consensus 26 qik~L~d~-~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 26 HVRDMAAA-GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 34455555 677777666665443 222331 35556677777888888888888776443222222211111
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 259 TFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 259 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
.+.. ...... ......+...--.+..+|.+.++.++|+.+++.
T Consensus 105 ~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 105 STGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1100 000000 001112233333466677778888888887776
No 249
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.83 E-value=22 Score=36.16 Aligned_cols=312 Identities=9% Similarity=0.003 Sum_probs=166.6
Q ss_pred HHhCCChHHHHHHHHHHHHcC-CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----C---cCHHHHHHHHHHH
Q 012442 123 LGKNGRFEQMWNAVRVMKEDG-VLS--LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV----E---QDVVAVNSLLSAI 192 (463)
Q Consensus 123 ~~~~g~~~~a~~~~~~m~~~~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~---~~~~~~~~ll~~~ 192 (463)
....|+.++++.++......+ ..+ ...=..+.-+.+..|..+++..++...+...- . +....-.++--++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 556788888888877655422 122 23334455566677776778887777654210 0 1111122222223
Q ss_pred HccC-CcHHHHHHHHHHhhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCC
Q 012442 193 CRQE-NQTSRALEFLNRVKKIVDPDG--DSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQ 269 (463)
Q Consensus 193 ~~~~-~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~ 269 (463)
+-.+ ++- ++.+.+..+...-.... ..-.+|...++-.|+-+-...++..+.+. ..++..-.-.+.-++...|+
T Consensus 464 a~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCC
Confidence 2221 343 44444444332111111 11123344455667877778888877653 23233334444455667899
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHH---HHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 012442 270 VDEALKFLRVMKGENCFPTLKFFS---NALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEK 346 (463)
Q Consensus 270 ~~~a~~~~~~m~~~~~~~~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 346 (463)
.+.+..+++.+.... .| ..-|. .+.-+|+..|+.....+++..+.. . ...++.-...+.-++...|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~-d-~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS-D-SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-C-SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc-C-CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 999999999887642 22 22233 334567788998888889888543 2 22233333333334555677777888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCCCChhhH-HHHHH-HHHcCCC-------HHHHHH
Q 012442 347 FFHEMIKNEWQPTPLNCATAITMLLDADEP-EIAIEIWNYILENGILPLEASA-NELLV-GLRNLGR-------LSDVRR 416 (463)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~-~~li~-~~~~~g~-------~~~a~~ 416 (463)
+++.+.+.+ .|....-..+.-+....|.. .++..++..+.. .+|..+- ++++. +..-.|. +...++
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~ 691 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINK 691 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Confidence 888777765 55555555555566656554 577778888764 2333333 33222 3444432 333333
Q ss_pred HHHHHHHC-CCccCHHHHHHHHHHHHHhcch
Q 012442 417 FAEEMLNR-RILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 417 ~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
.+...... .-.++...-..+.++....|..
T Consensus 692 ~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 692 NFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 33333322 2234455566666777766654
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.80 E-value=4.5 Score=28.13 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 012442 341 VHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYIL 387 (463)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 387 (463)
.-++.+-++.+....+.|++....+.+.+|-+.+++..|.++|+-++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444445555555555555555555555555554444
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.62 E-value=4.5 Score=27.96 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=12.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 012442 157 YCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSL 188 (463)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 188 (463)
+.+.|++++|..+.+.+. .||...|-+|
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~AL 77 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLAL 77 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHH
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHH
Confidence 344444444444443332 3444444433
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.11 E-value=7.4 Score=28.71 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012442 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 378 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 423 (463)
+..+-++.+...++.|++.+..+-+++|.+.+++.-|.++|+-.+.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555555555555544
No 253
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.29 E-value=6.1 Score=27.33 Aligned_cols=86 Identities=15% Similarity=0.113 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 012442 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347 (463)
Q Consensus 268 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 347 (463)
...++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.. ..||...|.+|-. .+.|..+++..-
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHH
Confidence 345677777777766652 2222222344566778888887776652 4677777776654 456777777766
Q ss_pred HHHHHHCCCCCCHHHH
Q 012442 348 FHEMIKNEWQPTPLNC 363 (463)
Q Consensus 348 ~~~~~~~~~~~~~~~~ 363 (463)
+.++..+| .|....|
T Consensus 92 L~~la~sg-~p~~q~F 106 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCC-CHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 66666666 4444443
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.05 E-value=8.7 Score=32.36 Aligned_cols=117 Identities=11% Similarity=0.056 Sum_probs=74.8
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHH----HHHHHHHHHHccC
Q 012442 121 DVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVV----AVNSLLSAICRQE 196 (463)
Q Consensus 121 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~~ 196 (463)
..+.+.|+++++++....-.+..+.|...-..+++.++-.|++++|.+-++...+. .|+.. .|..+|.+=...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE~~R- 81 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQAR- 81 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHHHHH-
Confidence 34567899999999999888888889998999999999999999999988888764 34432 333333321111
Q ss_pred CcHHHHHHHHHHhhc-CC-CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHh
Q 012442 197 NQTSRALEFLNRVKK-IV-DPDGDSFAILLEGW--EKEGNVEEANKTFGEMVER 246 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~-~~-~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~ 246 (463)
.++|.--.. ++ .....-...++.+. ...|+.++|..+-.+..+.
T Consensus 82 ------~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 82 ------KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 111111111 11 11222333344444 3468999998888887654
No 255
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=85.76 E-value=8.3 Score=28.41 Aligned_cols=64 Identities=11% Similarity=0.222 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCC
Q 012442 328 YNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE--PEIAIEIWNYILENGIL 392 (463)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~ 392 (463)
...++.-|...|+.++|.+.++++.... --...+...+..++-+.++ .+....++..+.+.|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4566777777777777777777764111 1112333444445555432 34455566666555543
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.65 E-value=15 Score=30.92 Aligned_cols=116 Identities=11% Similarity=0.057 Sum_probs=69.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHc
Q 012442 225 EGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENC--FPTLKFFSNALDILVKL 302 (463)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~ 302 (463)
....+.|+++++++....-++. .|.|...-..++..+|-.|+++.|.+-++...+..- .|...+|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE--- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA--- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH---
Confidence 3456778888888888777766 777887888888888888888888888887766541 11223444444332
Q ss_pred CCHhHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHH--HcCCHhHHHHHHHHHHHC
Q 012442 303 NDSTHAVQLWDIMMVFHGAFP-----DSLTYNMIFECLI--KNKRVHEVEKFFHEMIKN 354 (463)
Q Consensus 303 g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~ 354 (463)
..=.. +-..+-.| ...-...++.+.. ..|+.++|.++-.++.+.
T Consensus 79 -------~~R~~-vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 -------QARKD-FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -------HHHHH-HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHH-HHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11111 11111111 2223334444443 358888888887777654
No 257
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=85.57 E-value=0.011 Score=54.23 Aligned_cols=234 Identities=12% Similarity=0.100 Sum_probs=117.7
Q ss_pred HHHHHHHHHhc--cCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 012442 81 PDLVHEVLQLS--YDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYC 158 (463)
Q Consensus 81 ~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~ 158 (463)
+..|..++..+ .|.+++-++++..+.+. ..++..=+.|+-+|++.+++.+..+++.. +|..-...+.+-|.
T Consensus 83 ps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL~elEefl~~------~N~A~iq~VGDrcf 155 (624)
T 3lvg_A 83 PSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFING------PNNAHIQQVGDRCY 155 (624)
T ss_dssp CCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSSSTTTSTTSC------CSSSCTHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHHHhhCcHHHHHHHHcC------CCcccHHHHHHHHH
Confidence 33444444422 34555555555544331 22233334455555555554443322211 22222344455555
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012442 159 GAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANK 238 (463)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 238 (463)
..|.++.|.-+|..+.. |.-|...+.+. |++..|.+.-++ -.++.||-.+-.+|...+++.-|.-
T Consensus 156 ~e~lYeAAKilys~isN---------~akLAstLV~L-~~yq~AVdaArK-----Ans~ktWKeV~~ACvd~~EfrLAqi 220 (624)
T 3lvg_A 156 DEKMYDAAKLLYNNVSN---------FGRLASTLVHL-GEYQAAVDGARK-----ANSTRTWKEVCFACVDGKEFRLAQM 220 (624)
T ss_dssp HSCCSTTSSTTGGGSCC---------CTTTSSSSSSC-SGGGSSTTTTTT-----CCSSCSHHHHTHHHHHSCTTTTTTH
T ss_pred HccCHHHHHHHHHhCcc---------HHHHHHHHHHH-HHHHHHHHHHHh-----cCChhHHHHHHHHHhCchHHHHHHH
Confidence 55555555444433321 11222223333 444333322211 2467788888888888888877755
Q ss_pred HHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHh
Q 012442 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVF 318 (463)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 318 (463)
.--.+.- .|+ -...++..|-..|.+++.+.+++.-.... ......|+-|.-.|++- ++++..+.++....+
T Consensus 221 cGLniIv----had---eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sr 291 (624)
T 3lvg_A 221 CGLHIVV----HAD---ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSR 291 (624)
T ss_dssp HHHHHHC----CSS---CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS
T ss_pred hcchhcc----cHH---HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence 5444432 221 23345677788888888888888766432 35567777777666654 344443333321111
Q ss_pred cCCCC------CHHHHHHHHHHHHHcCCHhHHH
Q 012442 319 HGAFP------DSLTYNMIFECLIKNKRVHEVE 345 (463)
Q Consensus 319 ~~~~~------~~~~~~~li~~~~~~~~~~~a~ 345 (463)
-+++. ....|.-++-.|++...++.|.
T Consensus 292 iNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 292 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 11211 2345777777777777777654
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.21 E-value=4.3 Score=28.01 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=5.4
Q ss_pred HHhcCChHHHHHH
Q 012442 157 YCGAGKYDEAVMS 169 (463)
Q Consensus 157 ~~~~g~~~~A~~~ 169 (463)
+.+.|++++|..+
T Consensus 49 LmNrG~Yq~Al~l 61 (115)
T 2uwj_G 49 LANQGRYQEALAF 61 (115)
T ss_dssp HHHTTCHHHHHGG
T ss_pred HHcchhHHHHHHh
Confidence 3344444444433
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.48 E-value=5.9 Score=27.37 Aligned_cols=86 Identities=9% Similarity=-0.007 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 012442 268 KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKF 347 (463)
Q Consensus 268 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 347 (463)
...++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.. ..||...|.+|-. .+.|..+++..-
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHH
Confidence 345667666666666552 2222222334566777777777766552 3677777766654 566777777776
Q ss_pred HHHHHHCCCCCCHHHH
Q 012442 348 FHEMIKNEWQPTPLNC 363 (463)
Q Consensus 348 ~~~~~~~~~~~~~~~~ 363 (463)
+.++..+| .|....|
T Consensus 91 L~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTCS-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 76776666 4444443
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.21 E-value=13 Score=34.14 Aligned_cols=94 Identities=11% Similarity=-0.051 Sum_probs=41.9
Q ss_pred HHHHHHHccCCcHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHH----H
Q 012442 187 SLLSAICRQENQTSRALEFLNRVKK---IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYE----T 259 (463)
Q Consensus 187 ~ll~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----~ 259 (463)
.+...|.+. |+++.|.+.|.++.. +...-...+-.++..+...+++..+...+........-.+ +....+ .
T Consensus 136 ~la~~~~~~-Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~-d~~~~~~lk~~ 213 (429)
T 4b4t_R 136 NLGEYYAQI-GDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG-DWERRNRYKTY 213 (429)
T ss_dssp HHHHHHHHH-CCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC-CTHHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC-CHHHHHHHHHH
Confidence 344444444 444444444444443 2222334445555555555666666555555543211111 111111 1
Q ss_pred HHHHHHccCCHHHHHHHHHHHhh
Q 012442 260 FLITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 260 li~~~~~~~~~~~a~~~~~~m~~ 282 (463)
-...+...+++..|...|-+...
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHHhc
Confidence 11223345667777666666543
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.91 E-value=23 Score=30.76 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=87.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHH----HHHHHHhCCCCcCHHHHHHHHHH
Q 012442 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM----SFDVMSMHGVEQDVVAVNSLLSA 191 (463)
Q Consensus 116 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~~~~~~~~~ll~~ 191 (463)
|.++..-|.+++++++|++++..- ...+.+.|+...|-+ +.+...+.+++++......++..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g--------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG--------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344556677778888888776542 222344455444433 34555566777777777777766
Q ss_pred HHccCCcHHHHHHHHHHhhc-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHH
Q 012442 192 ICRQENQTSRALEFLNRVKK-----I--VDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITL 264 (463)
Q Consensus 192 ~~~~~~~~~~a~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~ 264 (463)
+......-..-.++.+.+.+ + -.-++.....+...|.+.|++.+|...|-.-... +...+..++.-+
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~------s~~~~a~~l~~w 175 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD------SMIKYVDLLWDW 175 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH------HHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc------cHHHHHHHHHHH
Confidence 65531111112233333221 1 2346677777888888888888877766522111 344444444333
Q ss_pred Hcc---CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 012442 265 IRG---KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMM 316 (463)
Q Consensus 265 ~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 316 (463)
... |...++ +.. ....+-.|.-.|+...|..+|+...
T Consensus 176 ~~~~~~~~~~e~--------------dlf-~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTV--------------AEF-FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHH--------------HHH-HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchH--------------HHH-HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 322 222221 111 1222334556778888888877643
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.86 E-value=27 Score=31.54 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCC---cCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHH---
Q 012442 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMH-GVE---QDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSF--- 220 (463)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~---~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--- 220 (463)
.+...|...|.+.|+.++..+++...... +.- -.......++..+....+..+.-.++..+..+-......+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777766665421 000 11223444555555443333333333333222000111122
Q ss_pred -H--HHHHHHHhcCCHHHHHHHHHHHHH
Q 012442 221 -A--ILLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 221 -~--~l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
. -++..|...|++.+|.+++.++.+
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1 345555555555555555555544
No 263
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=82.22 E-value=6.3 Score=30.06 Aligned_cols=65 Identities=11% Similarity=0.218 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCC
Q 012442 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADE--PEIAIEIWNYILENGIL 392 (463)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~ 392 (463)
....++.-|...|+.++|.+.++++.... --...+...+..++-+.++ .+.+..++..+.+.|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45677888888888888888888874211 1123334455556655432 34566666666665543
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.15 E-value=30 Score=31.67 Aligned_cols=61 Identities=15% Similarity=0.087 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-chHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 012442 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNP-EHVLAYETFLITLIRGKQVDEALKFLRVM 280 (463)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~~li~~~~~~~~~~~a~~~~~~m 280 (463)
+...+...|.+.|+++.|.+.|.++... ...+ .-...+-.++..+...+++..+...+.+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444555555555555555555555443 1111 11233444444444444444444444443
No 265
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=81.74 E-value=14 Score=28.09 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc
Q 012442 132 MWNAVRVMKEDGV--LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180 (463)
Q Consensus 132 a~~~~~~m~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 180 (463)
+.++|..|..+++ .-...|......+-..|++.+|.++|+.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555555544 234445555555555555555555555555444444
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.70 E-value=9.8 Score=30.42 Aligned_cols=58 Identities=28% Similarity=0.330 Sum_probs=43.9
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 012442 230 EGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288 (463)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 288 (463)
++...++.++|..|... |+--.-+..|......+-..|++.+|.++|+.-.+.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44466888888888875 76665666777778888888888888888888887776663
No 267
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.67 E-value=14 Score=27.59 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=11.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHH
Q 012442 366 AITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 366 li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
|.-++.+.|++++|.++.+.+.+
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33344555555555555555444
No 268
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=81.59 E-value=23 Score=31.38 Aligned_cols=232 Identities=9% Similarity=0.060 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccC--CHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012442 219 SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGK--QVDEALKFLRVMKGENCFPTLKFFSNAL 296 (463)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll 296 (463)
....++.-|...++.++|.+.++++... .. .......+|......+ .-+.+-.++..+.. ++-+.......+.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p-~~---~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~ 130 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLG-EM---KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFD 130 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCC-GG---GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCc-hh---HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 4567899999999999999999987532 22 2223334444433333 23455566666663 5444444444433
Q ss_pred HHHHHcCC----HhHHHH----HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH---HC-----------
Q 012442 297 DILVKLND----STHAVQ----LWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI---KN----------- 354 (463)
Q Consensus 297 ~~~~~~g~----~~~a~~----~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~----------- 354 (463)
..+....+ ...|.. ++.+++....+.|....- ... + -.-+.+.+++++.. ..
T Consensus 131 ~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~-~~~----~-~~~~~~~~~l~~a~~~L~~~~~~~~~~~~W 204 (358)
T 3eiq_C 131 KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDS-YKG----T-VDCVQARAALDKATVLLSMSKGGKRKDSVW 204 (358)
T ss_dssp HHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGG-GC--------CCHHHHHHHHHHHHHHTC---------CC
T ss_pred HHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHH-Hhh----c-ccchHHHHHHHHHHHHHhccchHHHHHHhc
Confidence 33333222 112222 233323333344332110 000 0 01112222222211 10
Q ss_pred ----CCCCC---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCC--HHHHHHHHHHHHHCC
Q 012442 355 ----EWQPT---PLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR--LSDVRRFAEEMLNRR 425 (463)
Q Consensus 355 ----~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~ 425 (463)
|..|. ......++.=|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+.+++..+...|
T Consensus 205 G~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~g 283 (358)
T 3eiq_C 205 GSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 283 (358)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 11222 223578888899999999999999988532111 22344555566666543 456788999999888
Q ss_pred CccCHHHHHHHHHHHHHhcch------hhhHHHHHHHHHhhcC
Q 012442 426 ILIYEVTMHKLKKAFYNESRS------MRDIFDSLERRCKTSQ 462 (463)
Q Consensus 426 ~~~~~~~~~~ll~~~~~~g~~------a~~~~~~~~~~~~~~~ 462 (463)
+.+.......+.+.+....+. |...+.+++.+....+
T Consensus 284 lls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~varai~~g 326 (358)
T 3eiq_C 284 TITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 326 (358)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCC
Confidence 876666665555555554443 6667777776665543
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.40 E-value=15 Score=29.45 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=50.2
Q ss_pred CCCCCHHHHHHHHHHHHh--CCChHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc
Q 012442 108 GQRLSPYAWNLMVDVLGK--NGRFEQMWNAVRVMKEDGV--LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ 180 (463)
Q Consensus 108 ~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 180 (463)
..+.|..-....+...-. ++....+.++|..|...++ .-...|......+-..|++.+|.++|+.-++.+-+|
T Consensus 72 rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 72 TYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp GGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455666544444443333 4556788888888887776 346677788888888888888888888877776666
No 270
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.05 E-value=8.2 Score=29.79 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHH
Q 012442 291 FFSNALDILVKLNDSTHAVQLWDIMM 316 (463)
Q Consensus 291 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 316 (463)
++..+.+++...|++..|...|++.+
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33444555555555555555555543
No 271
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=79.60 E-value=30 Score=29.97 Aligned_cols=99 Identities=6% Similarity=0.076 Sum_probs=62.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 012442 363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGR--LSDVRRFAEEMLNRRILIYEVTMHKLKKAF 440 (463)
Q Consensus 363 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 440 (463)
...++.-|...|+.++|.+.++++.-..+. ...+...+..++-+.++ .+.+..++..+.+.|+.+.......+.+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 457888888899999999999888532111 12344455556665543 456678899998888766655544444444
Q ss_pred HHhcch------hhhHHHHHHHHHhhcC
Q 012442 441 YNESRS------MRDIFDSLERRCKTSQ 462 (463)
Q Consensus 441 ~~~g~~------a~~~~~~~~~~~~~~~ 462 (463)
....+. |...+.+++.+....+
T Consensus 248 ~~l~Dl~lDiP~A~~~la~~v~~ai~~g 275 (307)
T 2zu6_B 248 NEIPDINLDVPHSYSVLERFVEECFQAG 275 (307)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHT
T ss_pred HhccHhhcccccHHHHHHHHHHHHHHCC
Confidence 444333 6666677766665543
No 272
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.90 E-value=17 Score=26.79 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 012442 357 QPTPLNCATAITMLLDADE---PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNR 424 (463)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 424 (463)
.|+..+--.+..++.+..+ ..++..+++++.+.+..-....+-.|.-++.+.|++++|.++.+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 5566665556666665554 3457777777776542223445555666888888888888888887754
No 273
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=77.67 E-value=19 Score=26.58 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=5.2
Q ss_pred CcHHHHHHHHHHh
Q 012442 197 NQTSRALEFLNRV 209 (463)
Q Consensus 197 ~~~~~a~~~~~~~ 209 (463)
|+++.|.++.+.+
T Consensus 92 gdY~~Ar~y~d~l 104 (134)
T 3o48_A 92 GEYSMAKRYVDTL 104 (134)
T ss_dssp TCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 4444444443333
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=75.87 E-value=24 Score=26.80 Aligned_cols=51 Identities=12% Similarity=0.127 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCCCh-hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccC
Q 012442 379 AIEIWNYILENGILPLE-ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429 (463)
Q Consensus 379 a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 429 (463)
+.++|..|..+|+--.. ..|......+...|++++|.++|+.-++.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 56666666665554332 3455555566666777777777776666665554
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.51 E-value=13 Score=31.39 Aligned_cols=82 Identities=16% Similarity=0.072 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHH--HHHHHHHHHHHhcchhh
Q 012442 373 ADEPEIAIEIWNYILENGILPLEAS--ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEV--TMHKLKKAFYNESRSMR 448 (463)
Q Consensus 373 ~g~~~~a~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~g~~a~ 448 (463)
.++.....++++.+.+.|..++... -.+.+...++.|+.+-+..+++. .|..++.. .-.+.+....+.|..
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l~~A~~~~~~-- 266 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKLK-- 266 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTTCH--
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcHHHHHHHcCcH--
Confidence 3444444556666666666554321 12233444456666544443331 33333211 111233444556666
Q ss_pred hHHHHHHHHHh
Q 012442 449 DIFDSLERRCK 459 (463)
Q Consensus 449 ~~~~~~~~~~~ 459 (463)
++++.+++.+-
T Consensus 267 ~i~~~Ll~~Ga 277 (285)
T 1wdy_A 267 KIAELLCKRGA 277 (285)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHcCC
Confidence 66666666543
No 276
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.45 E-value=25 Score=26.34 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccC
Q 012442 357 QPTPLNCATAITMLLDADE---PEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429 (463)
Q Consensus 357 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 429 (463)
.|+..+--.+..++.+..+ ..++..+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+.+.. |+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e--P~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE--RN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC--CC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CC
Confidence 5677776677777777765 45688888888875433334455556679999999999999999998763 54
No 277
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.36 E-value=44 Score=29.25 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=61.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHH----HHHHHHhCCCCcCHHHHHHHHHH
Q 012442 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVM----SFDVMSMHGVEQDVVAVNSLLSA 191 (463)
Q Consensus 116 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~~~~~~~~~ll~~ 191 (463)
|.++..-|.+.+++++|++++..- ...+.+.|+...|-+ +++-+.+.++++|......++..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G--------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV--------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344556677788888888876442 222344455444333 33455566677777776666666
Q ss_pred HHccCCcH-HHHHHHHHHhhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012442 192 ICRQENQT-SRALEFLNRVKK-------IVDPDGDSFAILLEGWEKEGNVEEANKTF 240 (463)
Q Consensus 192 ~~~~~~~~-~~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 240 (463)
+... ..- ..-..+.+++.+ .-.-|......+...|.+.+++.+|...|
T Consensus 104 ~~~~-~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 104 LRLF-QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HTTS-CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhC-CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6655 321 111222222211 13345666667777777777777777666
No 278
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=70.91 E-value=54 Score=28.73 Aligned_cols=170 Identities=12% Similarity=0.048 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHH----HHhhc-CCCCCHHHHHH
Q 012442 148 PTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFL----NRVKK-IVDPDGDSFAI 222 (463)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~----~~~~~-~~~~~~~~~~~ 222 (463)
..|.++..-|.+.+++++|++++..-.. .+.+. |....+-++- +...+ +.++|......
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~-~Q~~sg~DL~~llvevy~~~~~~~~~~~~~r 99 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRS-GQGGSGGDLAVLLVDTFRQAGQRVDGASRGK 99 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHT-TCHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHC-CCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3567788889999999999998755321 12222 3333333332 22223 56666666666
Q ss_pred HHHHHHhcCCHHH-HHHHHHH----HHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 012442 223 LLEGWEKEGNVEE-ANKTFGE----MVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALD 297 (463)
Q Consensus 223 l~~~~~~~g~~~~-a~~~~~~----~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 297 (463)
++..+.....-+- =..+.+. -.+..+..-.|......+...|.+.+++.+|...|- .|-.++...|..++-
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEY 175 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHH
Confidence 6666655443110 1112221 222111222256677888899999999999988883 233333466655554
Q ss_pred HHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 012442 298 ILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353 (463)
Q Consensus 298 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (463)
.+...+...++ +...-.+++ .|...++...|..+++...+
T Consensus 176 ew~~~~~~~e~---------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 176 EWYKQDESHTA---------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTSCGGGH---------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCccH---------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 44443332222 222222333 35556788888877666553
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=70.80 E-value=79 Score=30.59 Aligned_cols=275 Identities=8% Similarity=0.031 Sum_probs=139.5
Q ss_pred CchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 012442 94 SPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVM 173 (463)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 173 (463)
.+.+...+++.-. +.+.....-+..+..+++.+++...+.++.. .+.+...-.....+....|+..+|......+
T Consensus 54 ~~~ev~~Fl~~~~-~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l 128 (618)
T 1qsa_A 54 PAVTVTNFVRANP-TLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL 128 (618)
T ss_dssp CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCC-CChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 4444444444321 3333334456666777777887777665543 2335555566677777788877777777777
Q ss_pred HhCCCCcCHHHHHHHHHHHHccCCcHHHHH--HHHHHhh------------cCCCCCHHH-HHHHHHHHHhcCCHHHHHH
Q 012442 174 SMHGVEQDVVAVNSLLSAICRQENQTSRAL--EFLNRVK------------KIVDPDGDS-FAILLEGWEKEGNVEEANK 238 (463)
Q Consensus 174 ~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~--~~~~~~~------------~~~~~~~~~-~~~l~~~~~~~g~~~~a~~ 238 (463)
-..| ......+..++..+.+. |...... .=++.+. ..++++... ...++..+.+- ..+..
T Consensus 129 W~~~-~~~p~~c~~l~~~~~~~-g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~ 203 (618)
T 1qsa_A 129 WLTG-KSQPNACDKLFSVWRAS-GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLT 203 (618)
T ss_dssp HSCS-SCCCTHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHH
T ss_pred HhCC-CCCcHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHH
Confidence 6655 44455666677777655 4322211 1111111 111122111 11122111111 11111
Q ss_pred HHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----HHcCCHhHHHHHHHH
Q 012442 239 TFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDIL----VKLNDSTHAVQLWDI 314 (463)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~g~~~~a~~~~~~ 314 (463)
..... +..+.+...+..-+.-+.+ .+.+.|...|....... ..+......+-... ...+...++...+..
T Consensus 204 ~~~~~----~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~ 277 (618)
T 1qsa_A 204 FARTT----GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDD 277 (618)
T ss_dssp HHHHS----CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHH
T ss_pred HHhcc----CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHh
Confidence 11110 0011011111122233333 47788988888886543 23433333332222 333424456666665
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442 315 MMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 315 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 388 (463)
.. ... .+.....-.+....+.|+++.|...|..|.... .....-.--+..++...|+.++|..+|+.+.+
T Consensus 278 ~~-~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 278 AI-MRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HH-HTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cc-ccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 32 222 333333344444557799999999998886532 22344455667777888999999999998875
No 280
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=64.56 E-value=47 Score=26.03 Aligned_cols=115 Identities=7% Similarity=-0.030 Sum_probs=54.1
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHH---HHHHHHHH-hCCCCHHHHHHHHHHHHHcCCCCChhh---HHHHHHH
Q 012442 332 FECLIKNKRVHEVEKFFHEMIKNEWQPTPLN---CATAITML-LDADEPEIAIEIWNYILENGILPLEAS---ANELLVG 404 (463)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~li~~ 404 (463)
+...+..|+.+.-.++.+.+++.|..++... .+.|..++ ....+.....++.+.+.+.|..++... .++.+..
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~ 121 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGG
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHH
Confidence 3334455555555666666677665554322 22222222 223344455666677777776665431 1122222
Q ss_pred HHcCCCH-HHHHHHHHHHHH-CCCccCHHHH--HHHHHHHHHhcch
Q 012442 405 LRNLGRL-SDVRRFAEEMLN-RRILIYEVTM--HKLKKAFYNESRS 446 (463)
Q Consensus 405 ~~~~g~~-~~a~~~~~~m~~-~~~~~~~~~~--~~ll~~~~~~g~~ 446 (463)
.+..|.. ..-..+++.+.+ .|..++.... .+-+....+.|..
T Consensus 122 A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~ 167 (186)
T 3t8k_A 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP 167 (186)
T ss_dssp GGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCH
T ss_pred HHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCH
Confidence 2233322 334456666666 6655443211 1233344555665
No 281
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=62.81 E-value=11 Score=29.94 Aligned_cols=15 Identities=0% Similarity=0.036 Sum_probs=8.2
Q ss_pred HHhCCChHHHHHHHH
Q 012442 123 LGKNGRFEQMWNAVR 137 (463)
Q Consensus 123 ~~~~g~~~~a~~~~~ 137 (463)
.+..|+.+....++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 345566665555554
No 282
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=61.07 E-value=82 Score=27.28 Aligned_cols=189 Identities=12% Similarity=0.099 Sum_probs=102.7
Q ss_pred ChHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHH
Q 012442 128 RFEQMWNAVRVMKEDGV--LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEF 205 (463)
Q Consensus 128 ~~~~a~~~~~~m~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 205 (463)
.+++.+.-++.-.+.|- .-...|.++..-|.+.+++++|++++..-.. .+.+. |....|-++
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~-~Q~~sa~DL 75 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKA-KQGGSGTDL 75 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHC-CCcchHHHH
Confidence 34555555555555552 2355688888889999999999998765431 12223 444333332
Q ss_pred ----HHHhhc-CCCCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHH
Q 012442 206 ----LNRVKK-IVDPDGDSFAILLEGWEKEGNV-----EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALK 275 (463)
Q Consensus 206 ----~~~~~~-~~~~~~~~~~~l~~~~~~~g~~-----~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~ 275 (463)
.+...+ +.+++......++..+.....- +-..+....-.+..+..-.+......+...|.+.|++.+|..
T Consensus 76 a~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 76 IFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp HHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 233333 5666666666666666543211 112222222222111122256678888899999999999888
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 012442 276 FLRVMKGENCFPTLKFFSNALDILVKL---NDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMI 352 (463)
Q Consensus 276 ~~~~m~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (463)
.|- .|-.-|...+..++--+... |...++--.+- .+++ .|...|+...|..+|+...
T Consensus 156 H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~---------------RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 156 YFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS---------------RLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH---------------HHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHH----hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHH---------------HHHH-HHHHhcCHHHHHHHHHHHH
Confidence 775 22111344555555444443 44333222211 2222 3455688888888887764
No 283
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=60.31 E-value=92 Score=27.61 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHH
Q 012442 292 FSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 292 ~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
...++.-|...|+.++|.+.+++
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~E 242 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKE 242 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHH
Confidence 45556666666666666666666
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=59.40 E-value=42 Score=24.54 Aligned_cols=61 Identities=5% Similarity=0.086 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCC
Q 012442 117 NLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK--YDEAVMSFDVMSMHG 177 (463)
Q Consensus 117 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g 177 (463)
+.++.-|...|+.++|.+.++++.........+...+..++-+.++ .+.+.+++..+...|
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 4556666666666666666666542211123333334444444322 244555555555544
No 285
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.10 E-value=39 Score=27.54 Aligned_cols=52 Identities=8% Similarity=0.073 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCCCCh-hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccC
Q 012442 378 IAIEIWNYILENGILPLE-ASANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429 (463)
Q Consensus 378 ~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 429 (463)
++..+|..|..+|+--.. ..|......+...|++.+|.++|+.-++.+-.|-
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 455666666665554332 2444555556666666666666666666555553
No 286
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=57.92 E-value=6 Score=33.15 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=16.1
Q ss_pred HHHHHHHhcchhhhHHHHHHHHHhh
Q 012442 436 LKKAFYNESRSMRDIFDSLERRCKT 460 (463)
Q Consensus 436 ll~~~~~~g~~a~~~~~~~~~~~~~ 460 (463)
-+...++.|.. ++++.++++...
T Consensus 228 pL~~A~~~g~~--~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 228 PLMMAAKTGKI--GIFQHIIRREIA 250 (260)
T ss_dssp HHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred HHHHHHHcCCH--HHHHHHHHhCCC
Confidence 34455677888 888888887654
No 287
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=55.86 E-value=7 Score=24.01 Aligned_cols=35 Identities=9% Similarity=0.093 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHH-HHhcch
Q 012442 412 SDVRRFAEEMLNRRILIYEVTMHKLKKAF-YNESRS 446 (463)
Q Consensus 412 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~g~~ 446 (463)
++|.+.|.+|++..-.+...||...++.+ ++..++
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY 38 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRY 38 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCcc
Confidence 56777777766443334447888888888 677766
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=55.18 E-value=43 Score=27.95 Aligned_cols=121 Identities=15% Similarity=0.050 Sum_probs=55.5
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHH--HHHHHHH
Q 012442 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPD---SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNC--ATAITML 370 (463)
Q Consensus 296 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~ 370 (463)
+...+..|+.+-+..+++. .|..++ ..-.+.+ ...+..++.....++++.+.+.|..++.... ...+...
T Consensus 152 L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A 226 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDE----MGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHT----SCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh----cCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 3444556666555444432 233322 1122223 2334556655566777777777765543211 1223333
Q ss_pred hCCCCHHHHHHHHHHHHH-cCCCCChhh--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCccC
Q 012442 371 LDADEPEIAIEIWNYILE-NGILPLEAS--ANELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429 (463)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~-~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 429 (463)
+..|+.+-+. .+.+ .|..++... -.+-+....+.|+.+- .+-+.+.|..++
T Consensus 227 ~~~~~~~~v~----~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i----~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 227 VEKKHLGLVQ----RLLEQEHIEINDTDSDGKTALLLAVELKLKKI----AELLCKRGASTD 280 (285)
T ss_dssp HHTTCHHHHH----HHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHH----HHHHHHHSSCSC
T ss_pred HHcCCHHHHH----HHHhccCCCccccCCCCCcHHHHHHHcCcHHH----HHHHHHcCCCCC
Confidence 4456655443 3444 454443221 1123333445565543 333444565554
No 289
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=54.56 E-value=60 Score=26.14 Aligned_cols=48 Identities=10% Similarity=0.073 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHcCCCCHHH--------HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 012442 129 FEQMWNAVRVMKEDGVLSLPT--------FASIFDSYCGAGKYDEAVMSFDVMSMH 176 (463)
Q Consensus 129 ~~~a~~~~~~m~~~~~~~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~~ 176 (463)
++.|+.+|+.+.+....+... -...+..|.+.|.+++|.++|++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 467888888887766433221 123455677888888888888887653
No 290
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=51.52 E-value=1.8e+02 Score=28.18 Aligned_cols=273 Identities=11% Similarity=0.131 Sum_probs=138.5
Q ss_pred ChhhHHHHHhhCCCCCCHHHHH-HHHH--hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 012442 64 SSDDIESALACTGIIPTPDLVH-EVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMK 140 (463)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~~~~~-~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 140 (463)
...++...+.+.+-.|-...+. ..+. ...+++...+.++. ..+.+...-.....+....|+..+|......+-
T Consensus 54 ~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~----~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW 129 (618)
T 1qsa_A 54 PAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELW 129 (618)
T ss_dssp CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 4567778888776666554332 3333 22456665555443 235667667778888888899888888887777
Q ss_pred HcCCCCHHHHHHHHHHHHhcCChHH--HHHHHHHHHhCC-----------CCcCHH-HHHHHHHHHHccCCcHHHHHHHH
Q 012442 141 EDGVLSLPTFASIFDSYCGAGKYDE--AVMSFDVMSMHG-----------VEQDVV-AVNSLLSAICRQENQTSRALEFL 206 (463)
Q Consensus 141 ~~~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~m~~~g-----------~~~~~~-~~~~ll~~~~~~~~~~~~a~~~~ 206 (463)
..+.........++..+.+.|.+.. ..+=++.+...| +.++.. ....++..+.. ...+....
T Consensus 130 ~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~----p~~~~~~~ 205 (618)
T 1qsa_A 130 LTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN----PNTVLTFA 205 (618)
T ss_dssp SCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC----GGGHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC----hHhHHHHH
Confidence 7776555567777777776665433 233333333332 111110 11111111111 11111111
Q ss_pred HHhhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchH-hhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 012442 207 NRVKKIVDPDGD---SFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHV-LAYETFLITLIRGKQVDEALKFLRVMKG 282 (463)
Q Consensus 207 ~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~ 282 (463)
.. ..++.. .+...+.-+.+ .+.+.|...+....+...+.+... ..+..+...+...+...++...+.....
T Consensus 206 ~~----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~ 280 (618)
T 1qsa_A 206 RT----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM 280 (618)
T ss_dssp HH----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH
T ss_pred hc----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Confidence 11 122222 11122222333 367788888877765423322111 1222233333344434455556655444
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 012442 283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIK 353 (463)
Q Consensus 283 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (463)
.. .+.....-.+....+.|+++.|...|+.+ ..... ....-.--+..++...|+.++|..+|..+.+
T Consensus 281 ~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l-~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 281 RS--QSTSLIERRVRMALGTGDRRGLNTWLARL-PMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHS-CTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cC--CChHHHHHHHHHHHHCCCHHHHHHHHHHc-ccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 32 33333444444555678888888888773 22111 1222223344566677888888888877654
No 291
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=51.45 E-value=66 Score=27.87 Aligned_cols=100 Identities=11% Similarity=-0.000 Sum_probs=46.2
Q ss_pred HHHHHHHHHCCCCCCHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHcCCCHHHHHHHH
Q 012442 345 EKFFHEMIKNEWQPTPL---NCATAITMLLDADEPEIAIEIWNYILENGILPLE---ASANELLVGLRNLGRLSDVRRFA 418 (463)
Q Consensus 345 ~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~ 418 (463)
..+.+.+++.|..++.. -.+.| ...+..|..+....+++ ..|..++. .-++.|. ..++.|+.+- .
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L-~~a~~~~~~~~v~~Ll~---~~~~~vn~~d~~G~TpL~-~A~~~g~~~i----v 289 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPL-ILAVEKKHLGLVQRLLE---QEHIEINDTDSDGKTALL-LAVELKLKKI----A 289 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHH-HHHHHTTCHHHHHHHHT---STTCCTTCBCTTSCBHHH-HHHHTTCHHH----H
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHH-HHHHHhhhhHHHHHHHH---hcCCcccCcCCCCCCHHH-HHHHcCCHHH----H
Confidence 33444456666554432 12223 33344555554443322 12333322 1222333 3345566543 3
Q ss_pred HHHHHCCCccCHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Q 012442 419 EEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRC 458 (463)
Q Consensus 419 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~a~~~~~~~~~~~ 458 (463)
+.+.+.|..++..+ .+...++.|.. ++++.+++.+
T Consensus 290 ~~Ll~~GAd~n~~~---~L~~A~~~~~~--~iv~~Ll~~G 324 (337)
T 4g8k_A 290 ELLCKRGASTDCGD---LVMTARRNYDH--SLVKVLLSHG 324 (337)
T ss_dssp HHHHTTSCSSTTCC---HHHHHHHTTCH--HHHHHHHHTT
T ss_pred HHHHHCCCCCCCCC---HHHHHHHcCCH--HHHHHHHHCc
Confidence 34455676666544 34445566777 6676666654
No 292
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.93 E-value=38 Score=25.70 Aligned_cols=62 Identities=5% Similarity=0.075 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCC
Q 012442 116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGK--YDEAVMSFDVMSMHG 177 (463)
Q Consensus 116 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g 177 (463)
.+.++.-|...|+.++|...++++.........+...+..++-+.++ .+.+..++..+...|
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~ 75 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 75 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 34556666666666666666666542211123333333444443222 334455555555444
No 293
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=50.63 E-value=46 Score=22.84 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH-----HHCCCccCHHHHHHHH
Q 012442 378 IAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEM-----LNRRILIYEVTMHKLK 437 (463)
Q Consensus 378 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m-----~~~~~~~~~~~~~~ll 437 (463)
.|.++.+++...|+.|+..+...++..|...+- + +.++.++. ...|..|+..+.+.+=
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 467788888888999988888888887776664 2 44433332 2446777776666553
No 294
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=49.45 E-value=1e+02 Score=25.04 Aligned_cols=149 Identities=11% Similarity=0.005 Sum_probs=74.9
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHHCCCCCC
Q 012442 281 KGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNK-RVHEVEKFFHEMIKNEWQPT 359 (463)
Q Consensus 281 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~ 359 (463)
+..|...|...+..+........-...|..++.. . ..+-.-|-.-+.+.| ..+.+..++..+.+.|.-.|
T Consensus 40 L~kg~el~~e~~~~i~~~~~~~~a~~~Al~~Ls~-------r--~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD 110 (221)
T 3d5l_A 40 LMKGTELDEKQIAAIATADQQAKAYSRMLDYLSY-------Q--MRTESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDD 110 (221)
T ss_dssp CCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHTT-------S--CCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH
T ss_pred CcCCCCCCHHHHHHHHHhHHHHHHHHHHHHHhcc-------c--cccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCH
Confidence 3445555666666555443332223333333322 0 111222333333444 45667778888888887666
Q ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCCChhhHHHHHH-HHHcCC---CHHHHHHHHHHHHHC-CCccCHHHH
Q 012442 360 PLNCATAITMLLD-ADEPEIAIEIWNYILENGILPLEASANELLV-GLRNLG---RLSDVRRFAEEMLNR-RILIYEVTM 433 (463)
Q Consensus 360 ~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~-~~~~~g---~~~~a~~~~~~m~~~-~~~~~~~~~ 433 (463)
..--...+....+ .|. ....+-.++..+|+..+ +|. ++.... ..+.|..++++-... .-.++....
T Consensus 111 ~rfA~~~v~~~~~~~~~--G~~~I~~eL~~KGI~~~------~I~~al~~~~~~~e~e~a~~l~~Kk~~~~~~~~~~~~k 182 (221)
T 3d5l_A 111 HAYAASYVRTMINTDLK--GPGIIRQHLRQKGIGES------DIDDALTQFTPEVQAELAKKLALKLFRRYRNQPERRRE 182 (221)
T ss_dssp HHHHHHHHHHHHHHCCC--CHHHHHHHHHHTTCCHH------HHHHHGGGCCHHHHHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhccc--cHHHHHHHHHHcCCCHH------HHHHHHHhCCHHHHHHHHHHHHHHHHhhccCCChHHHH
Confidence 6655666666554 222 24556677778887532 222 222221 123444555543322 112234457
Q ss_pred HHHHHHHHHhcch
Q 012442 434 HKLKKAFYNESRS 446 (463)
Q Consensus 434 ~~ll~~~~~~g~~ 446 (463)
..+++.+.+.|-.
T Consensus 183 ~K~~~~L~rrGFs 195 (221)
T 3d5l_A 183 QKVQQGLTTKGFS 195 (221)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCC
Confidence 7788888888854
No 295
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=49.08 E-value=53 Score=21.42 Aligned_cols=61 Identities=10% Similarity=0.056 Sum_probs=38.8
Q ss_pred HHHHcCCCCChhhHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 385 YILENGILPLEASANELLVGLRNLG-RLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 385 ~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-.
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3556666655433 34455555543 4455777777777776666777777777888777754
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.06 E-value=88 Score=24.02 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=47.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH
Q 012442 108 GQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGV--LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDV 182 (463)
Q Consensus 108 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 182 (463)
..+.|..-....|..--.+ +...++|..|..+++ .-...|......+-..|++.+|.+||+.-++.+-.|-.
T Consensus 58 ~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 58 RYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp GGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred hhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4556665555555433333 336677888777776 34667777777778888888888888887777666643
No 297
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=48.60 E-value=1.7e+02 Score=27.05 Aligned_cols=125 Identities=9% Similarity=0.067 Sum_probs=68.9
Q ss_pred CHHHHHHHHHhccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 012442 80 TPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCG 159 (463)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~ 159 (463)
+...+...+.....+++.|.++-... +.+--...|..-...+...|++++|.++--.....-..+..|.+.+-..=..
T Consensus 330 ~e~~ivpyi~~~l~n~~lA~~lA~R~--~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~ 407 (494)
T 1bpo_A 330 EEENIIPYITNVLQNPDLALRMAVRN--NLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQ 407 (494)
T ss_dssp CTTTHHHHHHHTTCCHHHHHHHHHHT--TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCC
T ss_pred ccccchhhhhhccCCHHHHHHHHHhc--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCC
Confidence 33433333333445666666655432 4444455566667777777888888777766554434566666555554444
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHH
Q 012442 160 AGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNR 208 (463)
Q Consensus 160 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 208 (463)
-|...-.+..|..+.+.| +.+..---.+++.-... |+.+-.++++.+
T Consensus 408 pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q-~r~~llekWl~e 454 (494)
T 1bpo_A 408 PGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQ-GRKQLLEKWLKE 454 (494)
T ss_dssp TTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhc-cHHHHHHHHHhc
Confidence 555566666666666655 44443333344444444 555555554443
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.26 E-value=1.4e+02 Score=27.96 Aligned_cols=65 Identities=8% Similarity=0.085 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCC-CCCH--HHHH-HHHHHHHHcCCHhHHHHHHHHHHHC
Q 012442 289 LKFFSNALDILVKLNDSTHAVQLWDIMMVFHGA-FPDS--LTYN-MIFECLIKNKRVHEVEKFFHEMIKN 354 (463)
Q Consensus 289 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~--~~~~-~li~~~~~~~~~~~a~~~~~~~~~~ 354 (463)
...+|.+++.|...+.++.|..+..+. ..... .++. ..|. .+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~-~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKL-EYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHH-CSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcC-cCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 467888999999999999999999883 32211 1121 1222 2334456678999999998888765
No 299
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.72 E-value=37 Score=27.57 Aligned_cols=86 Identities=12% Similarity=0.032 Sum_probs=46.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCc--hHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH--HHHHHHH
Q 012442 223 LLEGWEKEGNVEEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF--FSNALDI 298 (463)
Q Consensus 223 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~ 298 (463)
.+...++.|+.+.+..+++.+.+. +..++ +..-++.| ...+..|+.+ +++.+.+.|..++... -.+.+..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQG-GRELDIYNNLRQTPL-HLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHL 85 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT-TCCSCCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-CCCCCcccccCCCHH-HHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHH
Confidence 556667778888887777766653 54442 22223333 3344456554 4444455554443211 1233445
Q ss_pred HHHcCCHhHHHHHHHH
Q 012442 299 LVKLNDSTHAVQLWDI 314 (463)
Q Consensus 299 ~~~~g~~~~a~~~~~~ 314 (463)
.+..|+.+-...+++.
T Consensus 86 A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDS 101 (241)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHc
Confidence 5567777666655554
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.46 E-value=29 Score=27.23 Aligned_cols=13 Identities=0% Similarity=0.248 Sum_probs=5.9
Q ss_pred HhcCCHHHHHHHH
Q 012442 228 EKEGNVEEANKTF 240 (463)
Q Consensus 228 ~~~g~~~~a~~~~ 240 (463)
+..|+.+....++
T Consensus 13 ~~~g~~~~v~~ll 25 (201)
T 3hra_A 13 ANQRDTKKVKEIL 25 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 3444544444444
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.31 E-value=1.2e+02 Score=24.98 Aligned_cols=31 Identities=19% Similarity=-0.051 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 012442 215 PDGDSFAILLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 215 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
.+.......+..+.+.|+-++|.++|-+...
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 3444555556666667777777776665543
No 302
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=46.79 E-value=96 Score=26.75 Aligned_cols=52 Identities=12% Similarity=0.020 Sum_probs=26.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCc---CHHHHHHHHHHHHccCCcHHHHHHHHHH
Q 012442 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQ---DVVAVNSLLSAICRQENQTSRALEFLNR 208 (463)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 208 (463)
..+...++.|+.+....++.. .+..+ |..-.+ .+...+.. |+.+-+..+++.
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t-~L~~A~~~-g~~~~v~~Ll~~ 80 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTP---LNVNCHASDGRKST-PLHLAAGY-NRVRIVQLLLQH 80 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCC-HHHHHHHT-TCHHHHHHHHHT
T ss_pred hhHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCC-HHHHHHHc-CCHHHHHHHHHc
Confidence 344455667787777666643 22222 222223 34444455 776666555543
No 303
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=46.19 E-value=1.1e+02 Score=24.74 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=17.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 012442 223 LLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 223 l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
.+-.|.+.|.+++|.++++....
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHhcchHHHHHHHHHHhc
Confidence 45567788888888888887744
No 304
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=45.55 E-value=81 Score=24.10 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCC
Q 012442 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGE--NCFPTLKFFSNALDILVKLND 304 (463)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~ 304 (463)
+.+.+-+.+..+..|+.. +. .-..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~-T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKY-TK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCC-CH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCC-CH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 334444444333345555 22 3445555555555566666666666655 444455555555555555553
No 305
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=45.01 E-value=51 Score=25.39 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHH
Q 012442 327 TYNMIFECLIKNKRVHEVEKFFHEMI 352 (463)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (463)
....++.-|...++.++|...++++.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 34677888888999999999998875
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.98 E-value=1.2e+02 Score=24.57 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC
Q 012442 234 EEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFP 287 (463)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 287 (463)
+++..+|..|... |+--.-...|......+-..|++.+|.++|..-.+.+-.|
T Consensus 131 ~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHH-HIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHT-TCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHC-CcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3555666666654 5554445556666666666666666666666666555554
No 307
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.14 E-value=99 Score=23.19 Aligned_cols=59 Identities=8% Similarity=0.110 Sum_probs=36.7
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 137 ~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
+.+.+.|......-..++..+...+..-.|.++++.+.+.+...+..|..-.|..+...
T Consensus 16 ~~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 74 (150)
T 2xig_A 16 MSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKE 74 (150)
T ss_dssp HHHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 34555665555555566666666666777778887777665556666666666666665
No 308
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=43.07 E-value=37 Score=21.29 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 012442 115 AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGA 160 (463)
Q Consensus 115 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~ 160 (463)
.++.++..++...-.+.++-.+++....|..+..+|---++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3455556666655666666666666666666655555555544443
No 309
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=42.60 E-value=1.2e+02 Score=23.82 Aligned_cols=16 Identities=19% Similarity=0.021 Sum_probs=7.1
Q ss_pred cCHHHHHHHHHHHHcc
Q 012442 180 QDVVAVNSLLSAICRQ 195 (463)
Q Consensus 180 ~~~~~~~~ll~~~~~~ 195 (463)
++..+-...+.++.+.
T Consensus 93 ~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQI 108 (211)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 4444444444444444
No 310
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=42.19 E-value=1.1e+02 Score=24.60 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=9.8
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 012442 157 YCGAGKYDEAVMSFDVMSMHG 177 (463)
Q Consensus 157 ~~~~g~~~~A~~~~~~m~~~g 177 (463)
.++.|+.+.+..+++.+.+.|
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 344455555555554444443
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.11 E-value=90 Score=23.24 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=31.4
Q ss_pred HHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 386 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
+.+.|+.++.. -..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-.
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 44555554432 2223334444444455666666666655555556655566666666543
No 312
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=42.10 E-value=94 Score=22.80 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhc
Q 012442 411 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444 (463)
Q Consensus 411 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 444 (463)
.-.|.++++.+.+.+...+..|.-.-++.+.+.|
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444444444444444444444444
No 313
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.19 E-value=1e+02 Score=22.90 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=30.9
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 139 m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
+.+.|......-..++..+...+..-.|.++++.+.+.+...+..|..--|..+...
T Consensus 13 l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 13 LKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 445554333334445555555555566666666666655445555555555555554
No 314
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=41.06 E-value=2.1e+02 Score=26.18 Aligned_cols=136 Identities=10% Similarity=-0.089 Sum_probs=68.4
Q ss_pred CHhHHHHHHHHHHHh-------cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-C---CCHHHHHHHHHHHhC
Q 012442 304 DSTHAVQLWDIMMVF-------HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEW-Q---PTPLNCATAITMLLD 372 (463)
Q Consensus 304 ~~~~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~---~~~~~~~~li~~~~~ 372 (463)
..++...+++..... .++..+......++.. -.|+..++..+++.+..... . ....+...+-.++.+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 455666666665443 2333455555555554 46778788777777654321 0 011222222222111
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH---HcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch---
Q 012442 373 ADEPEIAIEIWNYILENGILPLEASANELLVGL---RNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--- 446 (463)
Q Consensus 373 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--- 446 (463)
... ....+...+.-++.++ .+.++.+.|+.++.+|.+.|..|....-..+..+.-.-|.-
T Consensus 244 ~~~--------------~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~ 309 (447)
T 3pvs_A 244 RSA--------------RFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309 (447)
T ss_dssp CCC--------------C---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTH
T ss_pred hhh--------------ccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChh
Confidence 100 0001111222233333 24578889999999999888766655555555555555543
Q ss_pred hhhHHHHHH
Q 012442 447 MRDIFDSLE 455 (463)
Q Consensus 447 a~~~~~~~~ 455 (463)
|..++....
T Consensus 310 a~~~~~~~~ 318 (447)
T 3pvs_A 310 AMQVAIAAW 318 (447)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 315
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.04 E-value=1.2e+02 Score=23.21 Aligned_cols=60 Identities=7% Similarity=-0.054 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHH-H-----HHcCCCHHHHHHHHHHHHH
Q 012442 363 CATAITMLLDADEPEIAIEIWNYILENGILP--LEASANELLV-G-----LRNLGRLSDVRRFAEEMLN 423 (463)
Q Consensus 363 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 423 (463)
|..-+..|-. |++-+|.++++..-.....+ +...|..||. . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444 89999999998887654445 4557777777 2 3457999999999988765
No 316
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=40.76 E-value=20 Score=29.08 Aligned_cols=199 Identities=10% Similarity=-0.006 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCCCch--HhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHHcCCHhHHHHH
Q 012442 237 NKTFGEMVERFEWNPEH--VLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF---FSNALDILVKLNDSTHAVQL 311 (463)
Q Consensus 237 ~~~~~~~~~~~~~~p~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~g~~~~a~~~ 311 (463)
.++++.+.+. |..+.. .... +.+...+..|+.+-+ +.+.+.|..++... -...+...+..|+.+-+..+
T Consensus 22 ~~~~~~Ll~~-g~~~~~~~~~g~-t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~L 95 (240)
T 3eu9_A 22 YERCRELVEA-GYDVRQPDKENV-TLLHWAAINNRIDLV----KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95 (240)
T ss_dssp HHHHHHHHHT-TCCTTCCCTTSC-CHHHHHHHTTCHHHH----HHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHc-CCCcCCCCCCCC-CHHHHHHHhCCHHHH----HHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHH
Confidence 5667777764 655521 1112 344555666766544 44444443332111 12344455666776655444
Q ss_pred HHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHH
Q 012442 312 WDIMMVFHGAFPD---SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP---LNCATAITMLLDADEPEIAIEIWNY 385 (463)
Q Consensus 312 ~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~ 385 (463)
++ .|..++ ....+ .+...+..|+.+ +++.+.+.|..++. .-.+.+..+....+.. .+.+.
T Consensus 96 l~-----~g~~~~~~~~~g~t-~l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~----~~~~~ 161 (240)
T 3eu9_A 96 MK-----YGADPSLIDGEGCS-CIHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV----DPTRL 161 (240)
T ss_dssp HH-----TTCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS----TTHHH
T ss_pred HH-----cCCCCcccCCCCCC-HHHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCChH----HHHHH
Confidence 43 233332 12222 233445566655 44444555544432 2223444444333222 23333
Q ss_pred HHHcCCCCChhh---HHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHH--HHHHHHHHHHhcchhhhHHHHHHHHHhh
Q 012442 386 ILENGILPLEAS---ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT--MHKLKKAFYNESRSMRDIFDSLERRCKT 460 (463)
Q Consensus 386 ~~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~a~~~~~~~~~~~~~ 460 (463)
+.+.|..++... -.+.+...+..|+.+-+.-++ +.|..++... -.+.+....+.|.. ++++.+++...+
T Consensus 162 L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~--~~v~~L~~~~~~ 235 (240)
T 3eu9_A 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL----EAGANVDAQNIKGESALDLAKQRKNV--WMINHLQEARQA 235 (240)
T ss_dssp HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHH----HHTCCTTCBCTTSCBHHHHHHHTTCH--HHHHHHHHHC--
T ss_pred HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcH--HHHHHHHHhhhc
Confidence 455555544322 123445555677766444433 4455444221 12345566778888 788877776655
Q ss_pred c
Q 012442 461 S 461 (463)
Q Consensus 461 ~ 461 (463)
.
T Consensus 236 ~ 236 (240)
T 3eu9_A 236 K 236 (240)
T ss_dssp -
T ss_pred c
Confidence 4
No 317
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=40.37 E-value=1.2e+02 Score=24.22 Aligned_cols=76 Identities=16% Similarity=-0.009 Sum_probs=43.0
Q ss_pred HHHHHHHcCCCCChhh--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCcc---------CHHHHHHHHHHHHHhcchhhhH
Q 012442 382 IWNYILENGILPLEAS--ANELLVGLRNLGRLSDVRRFAEEMLNRRILI---------YEVTMHKLKKAFYNESRSMRDI 450 (463)
Q Consensus 382 ~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---------~~~~~~~ll~~~~~~g~~a~~~ 450 (463)
+++.+.+.|..++... -.+-+...+..|+.+-+..+++.+.+.|..+ |....+ -+...++.|.. ++
T Consensus 136 ~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~--~~ 212 (232)
T 2rfa_A 136 IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNI--VM 212 (232)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCH--HH
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCH--HH
Confidence 4444455565544321 1234445557777777777777777766533 222222 34455667777 77
Q ss_pred HHHHHHHHhh
Q 012442 451 FDSLERRCKT 460 (463)
Q Consensus 451 ~~~~~~~~~~ 460 (463)
++.++++...
T Consensus 213 v~~Ll~~g~~ 222 (232)
T 2rfa_A 213 FQHLMQKRKH 222 (232)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhcCcc
Confidence 7777776643
No 318
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=39.89 E-value=1.2e+02 Score=22.80 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=29.2
Q ss_pred HHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 386 ILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 386 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
+.+.|+.++. --..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-.
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3445554332 22233344444444455666666666555555555555555666555543
No 319
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.80 E-value=33 Score=27.71 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=5.8
Q ss_pred HcCCCHHHHHHHHH
Q 012442 406 RNLGRLSDVRRFAE 419 (463)
Q Consensus 406 ~~~g~~~~a~~~~~ 419 (463)
.+.|+.+-+.-+++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 34444444333333
No 320
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=39.43 E-value=81 Score=28.06 Aligned_cols=108 Identities=19% Similarity=0.216 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCCChhhHHHH
Q 012442 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT----PLNCATAITMLLDADE-PEIAIEIWNYILENGILPLEASANEL 401 (463)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l 401 (463)
....++.-|...|+.++|.+.++++. .|+ ...+..+..++-+... -+.+-.++..+...++-+.......+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~----~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf 89 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR----APKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAF 89 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT----CCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC----CchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 46788999999999999999999985 343 2334444444443321 23455667777766665444444444
Q ss_pred HHHHHcCCCH----HHHHHHHHHHHHCCCccCHHHHHHHHH
Q 012442 402 LVGLRNLGRL----SDVRRFAEEMLNRRILIYEVTMHKLKK 438 (463)
Q Consensus 402 i~~~~~~g~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~ 438 (463)
...+....+. ..|..++.++...-+.-+..+...+-+
T Consensus 90 ~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~ 130 (364)
T 3l6a_A 90 LNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQ 130 (364)
T ss_dssp HHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4444333322 234444444443333333344444333
No 321
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=39.17 E-value=84 Score=21.49 Aligned_cols=65 Identities=14% Similarity=0.050 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHH
Q 012442 134 NAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE 204 (463)
Q Consensus 134 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~ 204 (463)
.+++.+.+.++.+..-...+-. .......+.|.++++.+...| ...|..++.++... |....|..
T Consensus 25 ~vld~L~~~~vlt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et-~~~~La~l 89 (97)
T 3ygs_P 25 QLWDVLLSRELFRPHMIEDIQR-AGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDT-GQDMLASF 89 (97)
T ss_dssp TTHHHHHHTTSSCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHc-CcHHHHHH
Confidence 3667777777766554444332 101246778888888887654 34677777777665 65554443
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.57 E-value=2.3e+02 Score=29.08 Aligned_cols=109 Identities=11% Similarity=0.049 Sum_probs=70.3
Q ss_pred HHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc---------------
Q 012442 188 LLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPE--------------- 252 (463)
Q Consensus 188 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------------- 252 (463)
++..+... |..+-+.++. .-.+.+...--.+..+|...|++++|.+.|++.-. |+...
T Consensus 816 l~~~L~~~-~~~~~a~eL~----~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~--gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 816 LVEKLFLF-KQYNACMQLI----GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHT-TCHHHHHHHG----GGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--TTCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHh-cHHHHHHHHH----hhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcccCcccccchhhhhhccC
Confidence 45555555 7666554433 33344555555677778888888888888876532 22110
Q ss_pred -------hHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcC
Q 012442 253 -------HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL----KFFSNALDILVKLN 303 (463)
Q Consensus 253 -------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g 303 (463)
...-|..++..+-+.+.++.+.++-+...+.--.-|. ..|+.+.++.+..|
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1236889999999999999999988887764322233 35777777776654
No 323
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=38.02 E-value=76 Score=25.17 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=17.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 012442 223 LLEGWEKEGNVEEANKTFGEMVE 245 (463)
Q Consensus 223 l~~~~~~~g~~~~a~~~~~~~~~ 245 (463)
.+..|.+.|.+++|.++|+....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHccchHHHHHHHHHHhc
Confidence 45578888888888888888644
No 324
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.75 E-value=1.4e+02 Score=22.87 Aligned_cols=54 Identities=7% Similarity=-0.005 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCH
Q 012442 235 EANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTL 289 (463)
Q Consensus 235 ~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 289 (463)
++.++|..|..+ |+--.-+..|......+-..|++.+|.++|..-.+.+-.|-.
T Consensus 78 ~p~~if~~L~~~-~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQ-GIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHT-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 366677777764 665555566777777777777777777777777777766643
No 325
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=36.67 E-value=22 Score=26.62 Aligned_cols=49 Identities=14% Similarity=0.007 Sum_probs=22.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcchhhhHHHHHHH
Q 012442 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLER 456 (463)
Q Consensus 403 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~a~~~~~~~~~ 456 (463)
...+..|+.+-+.-+++. .+... .|..-. +.+...++.|.. ++++.+++
T Consensus 106 ~~A~~~~~~~~v~~Ll~~-~~~~~-~~~~g~-t~l~~A~~~~~~--~~v~~Ll~ 154 (156)
T 1bd8_A 106 HLAVQEGHTAVVSFLAAE-SDLHR-RDARGL-TPLELALQRGAQ--DLVDILQG 154 (156)
T ss_dssp HHHHHHTCHHHHHHHHTT-SCTTC-CCTTSC-CHHHHHHHSCCH--HHHHHHHT
T ss_pred HHHHHhChHHHHHHHHhc-cCCCC-cCCCCC-CHHHHHHHcCcH--HHHHHHHh
Confidence 334456666655444443 11111 121212 233444566776 66665554
No 326
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=36.19 E-value=1.9e+02 Score=25.28 Aligned_cols=24 Identities=4% Similarity=0.101 Sum_probs=15.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHH
Q 012442 117 NLMVDVLGKNGRFEQMWNAVRVMK 140 (463)
Q Consensus 117 ~~li~~~~~~g~~~~a~~~~~~m~ 140 (463)
..++.-|...|+.++|...++++.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 455666666677777766666653
No 327
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=36.10 E-value=2.6e+02 Score=25.77 Aligned_cols=136 Identities=13% Similarity=0.098 Sum_probs=91.3
Q ss_pred hhHHHHHh-hCCCCCCHHHHHHHHH--hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 012442 66 DDIESALA-CTGIIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142 (463)
Q Consensus 66 ~~~~~~l~-~~~~~~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 142 (463)
.++.-.+. +.|++=..+.|..-.. ...|++++|.++--...+|.-.+..+.+.+-.+=...|+..-.+.+|..+.+.
T Consensus 345 ~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~ 424 (494)
T 1bpo_A 345 PDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQ 424 (494)
T ss_dssp HHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhcc
Confidence 33444444 5566555666666555 55799999999998887788899999988887777778888899999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhh
Q 012442 143 GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVK 210 (463)
Q Consensus 143 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 210 (463)
|..+..----+++.-...|+.+-.++.+.+ ..+..+...=.. .+. .+...|+.+|.+..
T Consensus 425 g~Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEeLGDl-----vk~-~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 425 GQLNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEELGDL-----VKS-VDPTLALSVYLRAN 483 (494)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHHHHH-----HHH-HCSHHHHHHHHHHC
T ss_pred CccchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHHhHhh-----hhh-cCHHHHHHHHHHcC
Confidence 988765555567777777777666655543 223444332221 133 45556666665543
No 328
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.77 E-value=61 Score=27.39 Aligned_cols=10 Identities=0% Similarity=-0.197 Sum_probs=4.4
Q ss_pred HHhcCChHHH
Q 012442 157 YCGAGKYDEA 166 (463)
Q Consensus 157 ~~~~g~~~~A 166 (463)
.+..|+.+-+
T Consensus 38 A~~~g~~~~v 47 (285)
T 3kea_A 38 AIADNNVRLV 47 (285)
T ss_dssp HHHTTCHHHH
T ss_pred HHHcCCHHHH
Confidence 3444554433
No 329
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.22 E-value=1.1e+02 Score=22.47 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=31.5
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 139 MKEDGVLSLPTFASIFDSYCGAG-KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 139 m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
+++.|......-..++..+...+ ..-.|.++++.+.+.+...+..|..--|..+...
T Consensus 9 l~~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 9 LRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp HHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 44455433333445555555555 5666777777776665555555555555555554
No 330
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.05 E-value=2.9e+02 Score=25.93 Aligned_cols=69 Identities=13% Similarity=0.022 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CcC--HHHHHH-HHHHHHccCCcHHHHHHHHHHhhcCCCCC
Q 012442 147 LPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV-EQD--VVAVNS-LLSAICRQENQTSRALEFLNRVKKIVDPD 216 (463)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~--~~~~~~-ll~~~~~~~~~~~~a~~~~~~~~~~~~~~ 216 (463)
...+|.+++.|...+.++.|..+..+..--.. .++ ...|.. +...+.-. +++.+|.+.+.......+++
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q-~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQ-LDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCcc
Confidence 56788899999999999999999988751100 111 122332 22334445 88999988888876644433
No 331
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=35.04 E-value=1.1e+02 Score=22.96 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhc
Q 012442 411 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444 (463)
Q Consensus 411 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 444 (463)
.-.|.++++.+.+.+...+..|.-.-|+.+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344455555544444444444444444444444
No 332
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.55 E-value=1.5e+02 Score=22.47 Aligned_cols=102 Identities=9% Similarity=-0.013 Sum_probs=51.6
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHH
Q 012442 340 RVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAE 419 (463)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 419 (463)
..+.+..++..+.+.|.-.|..--...+....+.| .....+-.++..+|+..+ +....+..+. ....+.|.++++
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~--~i~~al~~~~-~d~~~~a~~l~~ 119 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISRE--ATEKAMREAD-IDWAALARDQAT 119 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHH--HHHHHHHHHC-CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHH--HHHHHHHHcC-HhHHHHHHHHHH
Confidence 34555666677777775555555555565555433 224456666777776532 2222222221 122344555544
Q ss_pred HHHHCCCccCHHHHHHHHHHHHHhcch
Q 012442 420 EMLNRRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 420 ~m~~~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
+-.......+......++..+.+.|-.
T Consensus 120 kk~~~~~~~~~~~~~K~~~~L~rrGF~ 146 (159)
T 3c1d_A 120 RKYGEPLPTVFSEKVKIQRFLLYRGYL 146 (159)
T ss_dssp HHHCSSCCCSHHHHHHHHHHHHHTTCC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 322111223445666777777777744
No 333
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.40 E-value=1.9e+02 Score=23.69 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 012442 288 TLKFFSNALDILVKLNDSTHAVQLWDI 314 (463)
Q Consensus 288 ~~~~~~~ll~~~~~~g~~~~a~~~~~~ 314 (463)
+.......+..+.+.|+-++|.++|-+
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 344455555666666666666666644
No 334
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=34.28 E-value=54 Score=21.72 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCH
Q 012442 232 NVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQV 270 (463)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~ 270 (463)
-.++|...|.+|....++.|. . +|...+...+...++
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~-~-tWe~~~~~i~~DpRY 51 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAF-S-TWEKELHKIVFDPRY 51 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSS-S-CHHHHHHHHHTCSGG
T ss_pred CHHHHHHHHHHHHHHcCcCCC-C-CHHHHHHHHccCCcc
Confidence 357888889888888888883 3 788777766655544
No 335
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.28 E-value=2.5e+02 Score=28.89 Aligned_cols=108 Identities=14% Similarity=0.044 Sum_probs=61.5
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-----------------
Q 012442 331 IFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILP----------------- 393 (463)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----------------- 393 (463)
++..+...|.++-|.++..- ++.+...--.+..+|...|++++|..+|+++.. |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 44455555665544433222 233443334556667777777777777765431 1110
Q ss_pred ------ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCH----HHHHHHHHHHHHhc
Q 012442 394 ------LEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYE----VTMHKLKKAFYNES 444 (463)
Q Consensus 394 ------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g 444 (463)
...-|..++..+.+.+-++.+.++-+...+.--.-|. ..|..++++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1125677788888888888888888877754222232 35666666665544
No 336
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=33.64 E-value=1.7e+02 Score=22.90 Aligned_cols=17 Identities=18% Similarity=-0.066 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHHcCC
Q 012442 288 TLKFFSNALDILVKLND 304 (463)
Q Consensus 288 ~~~~~~~ll~~~~~~g~ 304 (463)
+..+-...+.++.+.|+
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 34444444444444444
No 337
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=32.91 E-value=2.3e+02 Score=24.22 Aligned_cols=14 Identities=0% Similarity=0.105 Sum_probs=8.1
Q ss_pred hccCCchHHHHHHH
Q 012442 90 LSYDSPSSAVDFFR 103 (463)
Q Consensus 90 ~~~~~~~~a~~~~~ 103 (463)
...|+.+....+++
T Consensus 33 v~~g~~~~V~~LL~ 46 (337)
T 4g8k_A 33 VQNEDVDLVQQLLE 46 (337)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34566666665555
No 338
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.82 E-value=1.2e+02 Score=22.73 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=33.8
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 138 VMKEDGVLSLPTFASIFDSYCGAG-KYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 138 ~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
.+.+.|......-..++..+...+ ..-.|.++++.+.+.+...+..|..--|..+...
T Consensus 7 ~l~~~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 65 (150)
T 2w57_A 7 ALKDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDA 65 (150)
T ss_dssp HHHHTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 345555533333444555555555 5666777777777665555666666566666655
No 339
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=32.80 E-value=2.1e+02 Score=23.54 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=17.3
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHH
Q 012442 254 VLAYETFLITLIRGKQVDEALKFLRVM 280 (463)
Q Consensus 254 ~~~~~~li~~~~~~~~~~~a~~~~~~m 280 (463)
..++.-++..+.+.....+++..|+.+
T Consensus 229 ~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 229 VVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp SBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred cEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 345666666666666666666666654
No 340
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=32.65 E-value=81 Score=19.76 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 149 TFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
.++.++..+++..-.++++..+++..+.| ..+..+|---++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 46777888888888899999999999888 67777777777776654
No 341
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=31.93 E-value=98 Score=27.98 Aligned_cols=327 Identities=11% Similarity=0.075 Sum_probs=148.7
Q ss_pred hccCCchHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHH
Q 012442 90 LSYDSPSSAVDFFRWAGRGQRLSPY--AWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAV 167 (463)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 167 (463)
+..|+.+.+..+++. +..++.. .....+...++.|+.+-+.-+++.-...+..+..- .+.+...+..|+.+-+.
T Consensus 22 a~~g~~~~v~~Ll~~---g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A~~~g~~~~v~ 97 (437)
T 1n11_A 22 SFMGHLPIVKNLLQR---GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-QTPLHCAARIGHTNMVK 97 (437)
T ss_dssp HHHTCHHHHHHHHHT---TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS-CCHHHHHHHHTCHHHHH
T ss_pred HHCCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHHCCCHHHHH
Confidence 345777666666653 3322211 11234445556677665555554321111122221 23344455667765443
Q ss_pred HHHHHHHhCCCCcCH---HHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012442 168 MSFDVMSMHGVEQDV---VAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMV 244 (463)
Q Consensus 168 ~~~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (463)
.+.+.|..++. ...+. +...+.. |+.+.+..+++.-......+..- .+.+...+..|+.+-+..++
T Consensus 98 ----~Ll~~ga~~~~~~~~g~t~-L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll---- 166 (437)
T 1n11_A 98 ----LLLENNANPNLATTAGHTP-LHIAARE-GHVETVLALLEKEASQACMTKKG-FTPLHVAAKYGKVRVAELLL---- 166 (437)
T ss_dssp ----HHHHHTCCTTCCCTTCCCH-HHHHHHH-TCHHHHHHHHHTTCCSCCCCTTS-CCHHHHHHHTTCHHHHHHHH----
T ss_pred ----HHHhCCCCCCCCCCCCCcH-HHHHHHc-CCHHHHHHHHhCCCCCcCCCCCC-CCHHHHHHHcCCHHHHHHHH----
Confidence 34444544432 22233 3344455 77777777665432211112111 12344556677766544443
Q ss_pred HhcCCCCc--hHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHHcCCHhHHHHHHHHHHHhcC
Q 012442 245 ERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKF--FSNALDILVKLNDSTHAVQLWDIMMVFHG 320 (463)
Q Consensus 245 ~~~~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 320 (463)
+. |..++ +....+.+ ...+..|+.+ +++.+.+.|..++... -...+...+..|+.+-+..+++. |
T Consensus 167 ~~-g~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-----g 235 (437)
T 1n11_A 167 ER-DAHPNAAGKNGLTPL-HVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY-----G 235 (437)
T ss_dssp HT-TCCTTCCCSSCCCHH-HHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT-----T
T ss_pred hC-CCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-----C
Confidence 32 44432 11122233 3344555543 4455555554443321 12334455677777666555543 3
Q ss_pred CCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC
Q 012442 321 AFPD---SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP---LNCATAITMLLDADEPEIAIEIWNYILENGILPL 394 (463)
Q Consensus 321 ~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 394 (463)
..++ ..-.+. +...+..|+.+-+. .+.+.|..++. .-.+.|.. .+..|+.+ +++.+.+.|..++
T Consensus 236 ~~~~~~~~~g~t~-L~~A~~~g~~~~v~----~Ll~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~~~~Ll~~g~~~~ 305 (437)
T 1n11_A 236 GSANAESVQGVTP-LHLAAQEGHAEMVA----LLLSKQANGNLGNKSGLTPLHL-VAQEGHVP----VADVLIKHGVMVD 305 (437)
T ss_dssp CCTTCCCTTCCCH-HHHHHHTTCHHHHH----HHHTTTCCTTCCCTTCCCHHHH-HHHHTCHH----HHHHHHHHTCCTT
T ss_pred CCCCCCCCCCCCH-HHHHHHCCCHHHHH----HHHhcCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHhCCccCC
Confidence 2222 112222 33345567655443 33444433322 11222322 23345544 4444555565544
Q ss_pred hhh--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHH--HHHHHHHHHHhcchhhhHHHHHHHHH
Q 012442 395 EAS--ANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT--MHKLKKAFYNESRSMRDIFDSLERRC 458 (463)
Q Consensus 395 ~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~a~~~~~~~~~~~ 458 (463)
... -.+.+...+..|+.+-+ +.+.+.|..++... -.+-+...++.|.. +++..+++.+
T Consensus 306 ~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~--~iv~~Ll~~g 367 (437)
T 1n11_A 306 ATTRMGYTPLHVASHYGNIKLV----KFLLQHQADVNAKTKLGYSPLHQAAQQGHT--DIVTLLLKNG 367 (437)
T ss_dssp CCCSSCCCHHHHHHHSSCSHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHcCcHHHH----HHHHhcCCCCCCCCCCCCCHHHHHHHCChH--HHHHHHHHCc
Confidence 321 12233444566776543 34445565544322 12234445567777 7777777654
No 342
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.93 E-value=1e+02 Score=23.00 Aligned_cols=56 Identities=7% Similarity=0.027 Sum_probs=28.2
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 139 MKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 139 m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
+++.|......-..++..+...+ .-.|.++++.+.+.+...+..|..--|..+...
T Consensus 10 L~~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 10 LRQRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 34444432222334444444444 456666666666655455555555555555554
No 343
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=31.79 E-value=75 Score=23.76 Aligned_cols=117 Identities=10% Similarity=0.008 Sum_probs=55.7
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHH---HHHHHH
Q 012442 295 ALDILVKLNDSTHAVQLWDIMMVFHGAFP---DSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN---CATAIT 368 (463)
Q Consensus 295 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~ 368 (463)
.+...++.|+.+....+++. .+..+ +..-+ +.+...+..|+.+ +++.+.+.|..++... .+.|..
T Consensus 11 ~l~~A~~~g~~~~v~~ll~~----~~~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 81 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCTV----QSVNCRDIEGRQS-TPLHFAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPLHN 81 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCCT----TTTTCCCTTTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHc----CCCCccccccCCC-CHHHHHHHcChHH----HHHHHHhcCCCCCccCCCCCCHHHH
Confidence 34455677888777776653 22222 21112 2333445667754 4444455554443322 233333
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHcCCCHHHHHHHHHHHHHCCCccC
Q 012442 369 MLLDADEPEIAIEIWNYILENGILPLEASA--NELLVGLRNLGRLSDVRRFAEEMLNRRILIY 429 (463)
Q Consensus 369 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 429 (463)
+ +..|+.+ +.+.+.+.|..++.... .+-+...+..|+.+-+ +.+.+.|..++
T Consensus 82 A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~ga~~~ 135 (165)
T 3twr_A 82 A-CSYGHYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC----KLLLQHGADPT 135 (165)
T ss_dssp H-HHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTT
T ss_pred H-HHcCcHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHH----HHHHHcCCCCc
Confidence 3 3445554 44455566665543321 1233444556666533 33445565544
No 344
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=31.47 E-value=94 Score=28.13 Aligned_cols=341 Identities=10% Similarity=0.010 Sum_probs=152.2
Q ss_pred hHHHHHhhCCCCCCHHH---HHHHHH-hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 012442 67 DIESALACTGIIPTPDL---VHEVLQ-LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKED 142 (463)
Q Consensus 67 ~~~~~l~~~~~~~~~~~---~~~~l~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 142 (463)
++...|.+.|..++... ...+.. +..|+.+-+.-+++.-..-...+..-. ..+...++.|+.+-+.-+++.-...
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~~ 106 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNMVKLLLENNANP 106 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHHHHHHHHhCCCCC
Confidence 45555655665543211 111212 345776666666654221111222222 2344455667766554444431111
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc---CHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHH
Q 012442 143 GVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQ---DVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDS 219 (463)
Q Consensus 143 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 219 (463)
+..+..-. +.+...++.|+.+-+..+++ .|... +...++. +...+.. |+.+-+..+++.-..-...+..
T Consensus 107 ~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~-L~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~- 178 (437)
T 1n11_A 107 NLATTAGH-TPLHIAAREGHVETVLALLE----KEASQACMTKKGFTP-LHVAAKY-GKVRVAELLLERDAHPNAAGKN- 178 (437)
T ss_dssp TCCCTTCC-CHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCH-HHHHHHT-TCHHHHHHHHHTTCCTTCCCSS-
T ss_pred CCCCCCCC-cHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCH-HHHHHHc-CCHHHHHHHHhCCCCCCCCCCC-
Confidence 11222222 23445566788766655554 34332 2222333 4444556 8877666665542210111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCc--hHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHH--HHHHH
Q 012442 220 FAILLEGWEKEGNVEEANKTFGEMVERFEWNPE--HVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLK--FFSNA 295 (463)
Q Consensus 220 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l 295 (463)
-.+.+...+..|+.+-+ +.+.+. |..+. +...++. +...+..|+.+-+ +.+.+.|..++.. .-.+.
T Consensus 179 g~t~L~~A~~~~~~~~v----~~Ll~~-g~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~ 248 (437)
T 1n11_A 179 GLTPLHVAVHHNNLDIV----KLLLPR-GGSPHSPAWNGYTP-LHIAAKQNQVEVA----RSLLQYGGSANAESVQGVTP 248 (437)
T ss_dssp CCCHHHHHHHTTCHHHH----HHHGGG-TCCSCCCCTTCCCH-HHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCH
T ss_pred CCCHHHHHHHcCCHHHH----HHHHhC-CCCCCCcCCCCCCH-HHHHHHcCCHHHH----HHHHHcCCCCCCCCCCCCCH
Confidence 11234555667776544 444443 44442 1112333 3344556665544 4444555433321 11233
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH---HHHHHHHHH
Q 012442 296 LDILVKLNDSTHAVQLWDIMMVFHGAFPD---SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTP---LNCATAITM 369 (463)
Q Consensus 296 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~ 369 (463)
+...+..|..+-...+++ .+..++ ..-.+. +...++.|+.+-+..++ +.|..++. .-.+.|..+
T Consensus 249 L~~A~~~g~~~~v~~Ll~-----~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A 318 (437)
T 1n11_A 249 LHLAAQEGHAEMVALLLS-----KQANGNLGNKSGLTP-LHLVAQEGHVPVADVLI----KHGVMVDATTRMGYTPLHVA 318 (437)
T ss_dssp HHHHHHTTCHHHHHHHHT-----TTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHH----HHTCCTTCCCSSCCCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHh-----cCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHH----hCCccCCCCCCCCCCHHHHH
Confidence 445566777765554443 233322 222223 33345667766444444 44443332 222333333
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHH--HHHHHHHHHHhc
Q 012442 370 LLDADEPEIAIEIWNYILENGILPLEA---SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT--MHKLKKAFYNES 444 (463)
Q Consensus 370 ~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g 444 (463)
+..|+.+ +.+.+.+.|..++.. -++. +...++.|+.+ +.+.+.+.|..|+... -.+-+....+.|
T Consensus 319 -~~~g~~~----~v~~Ll~~gad~n~~~~~g~t~-L~~A~~~g~~~----iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g 388 (437)
T 1n11_A 319 -SHYGNIK----LVKFLLQHQADVNAKTKLGYSP-LHQAAQQGHTD----IVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388 (437)
T ss_dssp -HHSSCSH----HHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCSCCCCSSSCCHHHHHHHTT
T ss_pred -HHcCcHH----HHHHHHhcCCCCCCCCCCCCCH-HHHHHHCChHH----HHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence 3456654 445556667666543 2233 33444566655 3444556676665321 122334445566
Q ss_pred ch
Q 012442 445 RS 446 (463)
Q Consensus 445 ~~ 446 (463)
..
T Consensus 389 ~~ 390 (437)
T 1n11_A 389 YI 390 (437)
T ss_dssp CH
T ss_pred cH
Confidence 65
No 345
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.35 E-value=2e+02 Score=22.92 Aligned_cols=45 Identities=11% Similarity=0.021 Sum_probs=25.8
Q ss_pred HHHHHHHHcc---CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 012442 258 ETFLITLIRG---KQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303 (463)
Q Consensus 258 ~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 303 (463)
.-+|+++.++ .+.+.|+-.+.+|.+.| .|....-..++-+.-..|
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3344554443 77888888888888888 544333334444443333
No 346
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=31.20 E-value=1.8e+02 Score=22.49 Aligned_cols=16 Identities=19% Similarity=0.021 Sum_probs=6.6
Q ss_pred cCHHHHHHHHHHHHcc
Q 012442 180 QDVVAVNSLLSAICRQ 195 (463)
Q Consensus 180 ~~~~~~~~ll~~~~~~ 195 (463)
++...-...+.++.+.
T Consensus 88 ~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQI 103 (201)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 3444444444444444
No 347
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.22 E-value=2.1e+02 Score=22.76 Aligned_cols=40 Identities=13% Similarity=-0.008 Sum_probs=22.8
Q ss_pred HHHHHHHcc---CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 012442 259 TFLITLIRG---KQVDEALKFLRVMKGENCFPTLKFFSNALDI 298 (463)
Q Consensus 259 ~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 298 (463)
-+|+++.++ .+.+.|+-.+.+|++.|-.|....-..++-+
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344444433 6778888888888877755433333333333
No 348
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.22 E-value=72 Score=26.92 Aligned_cols=203 Identities=10% Similarity=0.040 Sum_probs=99.4
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 012442 229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA 308 (463)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 308 (463)
+..+..+..+++.. .++...|..-++.|.. .+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+
T Consensus 8 ~~~~~~~v~~lL~~----~~~~~~d~~g~t~L~~-A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v 78 (285)
T 3kea_A 8 NTWKSKQLKSFLSS----KDTFKADVHGHSASYY-AIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIV 78 (285)
T ss_dssp GGCCHHHHHHHHHS----TTTTCCCTTSCCHHHH-HHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHH
T ss_pred HhcCHHHHHHHHHh----CCCCccCCCCCCHHHH-HHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 34555556555543 2444434444444444 44567766554444 444333322123345555677777665
Q ss_pred HHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhCCCCHHHHHHH
Q 012442 309 VQLWDIMMVFHGAFPD---SLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPL---NCATAITMLLDADEPEIAIEI 382 (463)
Q Consensus 309 ~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~ 382 (463)
..+++ .|..++ ..-++.| ...+..|+.+-+..+++. |..++.. -+...+...+..|+.+ +
T Consensus 79 ~~Ll~-----~ga~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~----~ 144 (285)
T 3kea_A 79 KILLF-----SGLDDSQFDDKGNTAL-YYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVS----I 144 (285)
T ss_dssp HHHHH-----TTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHH----H
T ss_pred HHHHH-----CCCCCCCcCCCCCcHH-HHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHH----H
Confidence 55544 344333 2222333 334566776655554443 4333322 1123333344456654 4
Q ss_pred HHHHHHcCCCCChh-hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcchhhhHHHHHHHH
Q 012442 383 WNYILENGILPLEA-SANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERR 457 (463)
Q Consensus 383 ~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~a~~~~~~~~~~ 457 (463)
.+.+.+.|..+... .-.+.+...+..|+.+-+.-+++.-.+-+. .+..-....+...++.|.. ++++.+++.
T Consensus 145 v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~--~~v~~Ll~~ 217 (285)
T 3kea_A 145 VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI--EMLQALFKY 217 (285)
T ss_dssp HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH--HHHHHHTTS
T ss_pred HHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH--HHHHHHHHc
Confidence 44555555444222 334455556678888766666655433332 1222223334455567777 666666554
No 349
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.92 E-value=1.6e+02 Score=21.86 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 012442 270 VDEALKFLRVMKGENCFPTLKFFSNALDILVKLN 303 (463)
Q Consensus 270 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 303 (463)
.-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555555555444444444444444444443
No 350
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.62 E-value=33 Score=30.23 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCC
Q 012442 327 TYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDAD-EPEIAIEIWNYILENGIL 392 (463)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~ 392 (463)
-...++.-|...|+.++|.+.++++..... -...+...+..++-+.. .-+.+..++..+.+.|+-
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 356788899999999999999988852211 11222333333433322 234455667777766654
No 351
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=29.48 E-value=94 Score=27.19 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=32.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 012442 347 FFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENG 390 (463)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 390 (463)
++..+.+.|+.|...++..++..|.+.=.++.+..+|+.+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 45556667777777777777777777777888888888777655
No 352
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=29.15 E-value=1.3e+02 Score=20.17 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHH
Q 012442 132 MWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTS 200 (463)
Q Consensus 132 a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 200 (463)
...+++.+.+.++.+..-+..+-. .....+.|.++++.+...| ...|..++.++.+. +...
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~---~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~-~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRN---EPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHE-GYKD 84 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHT---SSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHT-TCHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHc---CCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHc-CHHH
Confidence 345677777777776655555444 2566777888887776443 56677777777665 5433
No 353
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.96 E-value=1.4e+02 Score=20.37 Aligned_cols=34 Identities=12% Similarity=0.069 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHH
Q 012442 375 EPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLS 412 (463)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 412 (463)
..++|.++++.+..+|.. .|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG~~----Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQ----ALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTT----HHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChH----HHHHHHHHHHHcCcHH
Confidence 455555555555554432 5555555554444433
No 354
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.51 E-value=1.5e+02 Score=22.57 Aligned_cols=66 Identities=5% Similarity=0.111 Sum_probs=36.6
Q ss_pred HHHHHHHH-HHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHcc
Q 012442 130 EQMWNAVR-VMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMH--GVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 130 ~~a~~~~~-~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~ 195 (463)
+.+++-+. .+.+.|......-..++..+...+..-.|.++++.+.+. +...+..|..--|..+...
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~ 82 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEA 82 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC
Confidence 33343333 344455533333455566666666666777777777665 4445555555556666655
No 355
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.92 E-value=46 Score=27.43 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=15.0
Q ss_pred HHHHHHHhcchhhhHHHHHHHHHhh
Q 012442 436 LKKAFYNESRSMRDIFDSLERRCKT 460 (463)
Q Consensus 436 ll~~~~~~g~~a~~~~~~~~~~~~~ 460 (463)
-+...++.|.. ++++.++++...
T Consensus 224 pL~~A~~~g~~--~~v~~Ll~~g~~ 246 (256)
T 2etb_A 224 PLKLAAKEGKI--EIFRHILQREFS 246 (256)
T ss_dssp HHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred HHHHHHHhCCH--HHHHHHHhCCCC
Confidence 34445667777 777777776643
No 356
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=27.69 E-value=62 Score=26.66 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=28.6
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHh--CCCCHHHHHHHHHHH
Q 012442 334 CLIKNKRVHEVEKFFHEMIKNEWQPTPLN-------CATAITMLL--DADEPEIAIEIWNYI 386 (463)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~li~~~~--~~g~~~~a~~~~~~~ 386 (463)
..++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34556777776667766666554444322 234444332 456666666555543
No 357
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.79 E-value=81 Score=23.32 Aligned_cols=34 Identities=3% Similarity=0.074 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhc
Q 012442 411 LSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444 (463)
Q Consensus 411 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 444 (463)
.-.|.++++.+.+.+...+..|.-.-|+.+.+.|
T Consensus 29 h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 29 FRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3334444444444443344444444444444444
No 358
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=26.57 E-value=45 Score=21.39 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHH-CCCccCHHHHHHHHHHHHHhcch
Q 012442 410 RLSDVRRFAEEMLN-RRILIYEVTMHKLKKAFYNESRS 446 (463)
Q Consensus 410 ~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~ 446 (463)
..++|...|.+|++ .+|.| ..+|...+..+....++
T Consensus 13 t~eea~~~F~~LL~e~~V~~-~~tWe~~~~~i~~DpRY 49 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPS-NASWEQAMKMIINDPRY 49 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCT-TCCHHHHHHHHHTSGGG
T ss_pred CHHHHHHHHHHHHHHcCcCC-CCCHHHHHHHHccCccc
Confidence 35677777777664 44433 36777777777777666
No 359
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=26.24 E-value=60 Score=26.17 Aligned_cols=21 Identities=5% Similarity=-0.086 Sum_probs=12.0
Q ss_pred HHHhCCCCHHHHHHHHHHHHH
Q 012442 368 TMLLDADEPEIAIEIWNYILE 388 (463)
Q Consensus 368 ~~~~~~g~~~~a~~~~~~~~~ 388 (463)
......|+...+.++.+.+.+
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 334455666666666665544
No 360
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=25.82 E-value=99 Score=17.65 Aligned_cols=34 Identities=24% Similarity=0.041 Sum_probs=23.9
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHhccCCchHHHHHH
Q 012442 68 IESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFF 102 (463)
Q Consensus 68 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~ 102 (463)
-...|...|+ .+.......|..+.|+.+.|.+++
T Consensus 10 ~i~~L~~MGF-~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 10 QLRQLNDMGF-FDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp HHHHHHHTTC-CCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCC-CcHHHHHHHHHHhCCCHHHHHHHH
Confidence 3456777886 455666677777889998888765
No 361
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.80 E-value=96 Score=22.89 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
-..++..+...+..-.|.++++.+.+.+...+..|..--|..+...
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~ 61 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADA 61 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 3455566666666667777777777766566666666666666665
No 362
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.11 E-value=88 Score=22.77 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhc
Q 012442 408 LGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNES 444 (463)
Q Consensus 408 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 444 (463)
.+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 23 ~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 23 LDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp CCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333445555555554444444444444444444444
No 363
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.01 E-value=1.4e+02 Score=19.19 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
.-.+.++++.+.+.+...+..|..-.|..+.+.
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 344445555554443333444444444444433
No 364
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.64 E-value=2.4e+02 Score=21.57 Aligned_cols=50 Identities=8% Similarity=0.100 Sum_probs=28.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCc--CHHHHHHHHH-HH-----HccCCcHHHHHHHHHHh
Q 012442 159 GAGKYDEAVMSFDVMSMHGVEQ--DVVAVNSLLS-AI-----CRQENQTSRALEFLNRV 209 (463)
Q Consensus 159 ~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ll~-~~-----~~~~~~~~~a~~~~~~~ 209 (463)
..|++-+|.++|+..-...-.+ +...|..||. .. .+. |+...|..++.+.
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~r-gN~~GA~~ll~~A 101 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDF-EDDDGMRSLFRTS 101 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHH
Confidence 3377778877777776543334 4445555555 21 223 5555555555554
No 365
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=24.44 E-value=1.9e+02 Score=20.50 Aligned_cols=65 Identities=14% Similarity=0.037 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCHH
Q 012442 163 YDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKK--IVDPDGDSFAILLEGWEKEGNVE 234 (463)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 234 (463)
+.+|+.-+++.... ..|......++..+-.. ++.++++.....+ |+ .+.++...+....+.|-++
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t---~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~ 70 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT---FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLP 70 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCC
Confidence 44555555555433 34444444455444433 4444444444332 33 2344444444444444443
No 366
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.24 E-value=1.2e+02 Score=24.69 Aligned_cols=53 Identities=8% Similarity=0.005 Sum_probs=25.4
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhC--CCCHHHHHHHHHHHH
Q 012442 335 LIKNKRVHEVEKFFHEMIKNEWQPTP-------LNCATAITMLLD--ADEPEIAIEIWNYIL 387 (463)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~--~g~~~~a~~~~~~~~ 387 (463)
.+..|+.+.+..+++.+.+.|..++. .-.+.|..+... .|+.+-+..+++.-.
T Consensus 9 A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 9 VVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCC
Confidence 45556666666666665555543332 223334333322 255555555554433
No 367
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=23.66 E-value=2.9e+02 Score=26.22 Aligned_cols=73 Identities=8% Similarity=-0.030 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHH
Q 012442 197 NQTSRALEFLNRVKKIVDP-DGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEA 273 (463)
Q Consensus 197 ~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a 273 (463)
.+.+......+++...++. +..-...++..|.+.|-.+.|.++++.+-.+ -+. +...+ .-+..|.++|+++.+
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k-~l~--~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQ-MLS--AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC----------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-HHH--CccHH-HHHHHHHHcCChhhc
Confidence 4455556666665554433 3455667788888888888888888887654 222 33344 555667787777654
No 368
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.49 E-value=2.9e+02 Score=22.19 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=27.6
Q ss_pred hHHHHHHHHHcc---CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 012442 256 AYETFLITLIRG---KQVDEALKFLRVMKGENCFPTLKFFSNALDILVK 301 (463)
Q Consensus 256 ~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 301 (463)
.+.-+|+++.++ .+.+.|+-.+.+|++.|-.|....-..++-+.-.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsED 82 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACED 82 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 344455555444 7888888888888888855544443444444333
No 369
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=22.80 E-value=7.3e+02 Score=26.64 Aligned_cols=155 Identities=12% Similarity=0.054 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC------------------------------------ChHHHHHHHH
Q 012442 128 RFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAG------------------------------------KYDEAVMSFD 171 (463)
Q Consensus 128 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g------------------------------------~~~~A~~~~~ 171 (463)
+.+++.++|+++.+..+.....+...++.+-... .+++.+++-+
T Consensus 1122 ~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~ad 1201 (1354)
T 3lxu_X 1122 ELEMAEKIYNDVVAAHPKHLQANLLLIQNIESNQLKSQLPLTFVNAQKTSPPEAGESADKQKEDQKKVRSALERIVKLAD 1201 (1354)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHSSCCCCHHHHHHTTSCCCSSCTTHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCccHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccchhhhhHHHHHHHHHHHHH
Q ss_pred HHHhC----------CCCcCHHH------------HHHHHHHHHc---------------cCCcHHHHHHHHHHhhc-CC
Q 012442 172 VMSMH----------GVEQDVVA------------VNSLLSAICR---------------QENQTSRALEFLNRVKK-IV 213 (463)
Q Consensus 172 ~m~~~----------g~~~~~~~------------~~~ll~~~~~---------------~~~~~~~a~~~~~~~~~-~~ 213 (463)
..++. |.+.|... -+.|+.++++ . ...+...+.|.++.+ --
T Consensus 1202 ~vi~~id~~~l~~~~g~k~d~~~~a~k~k~~m~~~k~~l~~al~~k~~ala~~~~~~~~~~-~~~~~~~~~~~el~k~~d 1280 (1354)
T 3lxu_X 1202 KVIQETDSEALLSYYGLKNDTRADAAKIKTNMDKQKNTLIEALSKKGIAVAKLAVLDDCIK-DSLAEINELYTEIIKFVD 1280 (1354)
T ss_dssp HTTCHHHHTTTSTTCCSTHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSG-GGHHHHHHHHHHHTTSSC
T ss_pred HHHHhcCHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHhhcc
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 012442 214 DPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPT 288 (463)
Q Consensus 214 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 288 (463)
.-|.......+..-...+++..|++++.++.+. .| ....|..++..+...| |+....+.+++.-...+++
T Consensus 1281 ~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~---k~-~~~~~~~~~~~~~~l~-w~h~~~~~~~~~~~~~p~~ 1350 (1354)
T 3lxu_X 1281 ANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE---KR-TRDHFVELAAINGALG-HEHIRTVINRMMITAFPSS 1350 (1354)
T ss_dssp TTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---TC-CHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHSCSS
T ss_pred cCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc---cc-cHHHHHHHHHHHHHcC-CHHHHHHHHhhhhhhCccc
No 370
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.60 E-value=1.6e+02 Score=23.40 Aligned_cols=12 Identities=8% Similarity=-0.058 Sum_probs=5.9
Q ss_pred CcHHHHHHHHHH
Q 012442 197 NQTSRALEFLNR 208 (463)
Q Consensus 197 ~~~~~a~~~~~~ 208 (463)
|+.+....+++.
T Consensus 17 g~~~~v~~ll~~ 28 (231)
T 3aji_A 17 GKLDELKERILA 28 (231)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 555555544443
No 371
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.54 E-value=1.7e+02 Score=20.96 Aligned_cols=18 Identities=6% Similarity=-0.104 Sum_probs=10.3
Q ss_pred HHHHcCCHhHHHHHHHHH
Q 012442 298 ILVKLNDSTHAVQLWDIM 315 (463)
Q Consensus 298 ~~~~~g~~~~a~~~~~~~ 315 (463)
.+...++++.|.++...+
T Consensus 70 ~al~~~dy~~A~~ih~~l 87 (118)
T 2yru_A 70 QELLHHQWDAADDIHRSL 87 (118)
T ss_dssp HHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 344556666666666554
No 372
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.12 E-value=1.8e+02 Score=21.04 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=26.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc
Q 012442 152 SIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ 195 (463)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 195 (463)
.++..+...+..-.|.++++.+.+.+...+..|..-.|..+...
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASS 58 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 34555555555666777777776665555666655566666655
No 373
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.77 E-value=2e+02 Score=24.75 Aligned_cols=69 Identities=12% Similarity=0.141 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcc-CCcHHHHHHHHHHhhc-CCCCCHHH
Q 012442 150 FASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQ-ENQTSRALEFLNRVKK-IVDPDGDS 219 (463)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~ 219 (463)
...++.-|...|+.++|.+.++++..-. --...+...+..++-+. ....+....++..+.. ++-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~-f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCc-chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4456666666777777777777765211 11123333444444432 0123445556665554 44443333
No 374
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=20.25 E-value=1.9e+02 Score=18.88 Aligned_cols=32 Identities=19% Similarity=0.049 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHcCCC
Q 012442 379 AIEIWNYILENGILPLEASANELLVGLRNLGR 410 (463)
Q Consensus 379 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 410 (463)
+..+-+++...|+.++..+...++..|...+.
T Consensus 5 ~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~~ 36 (78)
T 4e2i_2 5 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 36 (78)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHTHHHHSCC
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCC
Confidence 34455556666666666666666665555443
Done!