BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012445
(463 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 475
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 128/387 (33%), Positives = 208/387 (53%), Gaps = 14/387 (3%)
Query: 80 KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
K+S+L NG+K+A+ + +++ LY+ GS +E G TH+L+R+AF+ST +
Sbjct: 7 KLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRA 66
Query: 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKV 199
+ +E +GGN Q ++SRE + Y V +M++L+ + VR P + E+ EQ
Sbjct: 67 MAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSA 126
Query: 200 KSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPR 258
+ EI EV P+ +L E +H+A YSG L +PL+ P I ++ L ++ + YT
Sbjct: 127 EYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPEN 186
Query: 259 MVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPK-SVYTGGDYRCQADS---GD--QLTH 312
V A GV H++ + + L D S HP K + YTGG+ C + G+ +L H
Sbjct: 187 TVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGE-SCIPPAPVFGNLPELFH 245
Query: 313 FVLAFELPGGWHKDK-DAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 371
+ FE G D D L LQ LL MYSRLY VLN++ V++
Sbjct: 246 IQIGFE---GLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVEN 302
Query: 372 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGE--VDQVQLDRAKQSTK 429
AF++ Y+ SG+FGI + +A+++ A+++ + + + + ++ RAK K
Sbjct: 303 CVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLK 362
Query: 430 SAILMNLESRMVVSEDIGRQVLTYGER 456
S++LMNLES++V ED+GRQVL +G +
Sbjct: 363 SSLLMNLESKLVELEDMGRQVLMHGRK 389
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|O Chain O, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|B Chain B, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|O Chain O, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|O Chain O, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|O Chain O, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|B Chain B, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|O Chain O, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|B Chain B, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|O Chain O, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|B Chain B, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|O Chain O, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|B Chain B, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|O Chain O, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|B Chain B, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|O Chain O, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|B Chain B, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|O Chain O, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|B Chain B, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|O Chain O, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|B Chain B, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|O Chain O, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|B Chain B, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|O Chain O, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 441
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 191/375 (50%), Gaps = 9/375 (2%)
Query: 80 KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
+I+ LPNG+ IAS + SP + I +++ GS YE+ + GT HLL + +T+ S R
Sbjct: 27 EITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANLGTAHLLRLASPLTTKGASSFR 86
Query: 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKV 199
I R +EA+GG++ ++RE+M Y + L+ +V ++E L++ P F WEV + ++
Sbjct: 87 ITRGIEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEYLLNVTTAPEFRPWEVTDLQPQL 146
Query: 200 KSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRM 259
K + + +PQ +LE +H+A Y ALANPL P+ I ++ S L FV N+T RM
Sbjct: 147 KVDKAVAFQSPQVGVLENLHAAAYKTALANPLYCPDYRIGKITSEQLHHFVQNNFTSARM 206
Query: 260 VLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFEL 319
L GV+H L VAE L ++ S K+ Y GG+ R Q +G L H + E
Sbjct: 207 ALVGIGVKHSDLKQVAEQFL-NIRSGAGTSSAKATYWGGEIREQ--NGHSLVHAAVVTE- 262
Query: 320 PGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIY 379
G +A +VLQ +L + S+LY+ V Q SAF+ Y
Sbjct: 263 -GAAVGSAEANAFSVLQHVL---GAGPLIKRGSSVTSKLYQGVAKATTQPFDASAFNVNY 318
Query: 380 NHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR 439
+ SG+FG + + + I A +L A G V + + +AK K+ LM++E+
Sbjct: 319 SDSGLFGFYTISQAAHAGEVIRAAMNQL-KAAAQGGVTEEDVTKAKNQLKATYLMSVETA 377
Query: 440 MVVSEDIGRQVLTYG 454
+ +IG + L G
Sbjct: 378 QGLLNEIGSEALLSG 392
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 177 bits (450), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 194/381 (50%), Gaps = 13/381 (3%)
Query: 76 PGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR 135
P +I+ LPNG+ IAS + SP ++I +++ GS YE+ + GT+HLL + +T+
Sbjct: 4 PQDLEITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLLRLASSLTTKGA 63
Query: 136 SHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQ 195
S +I R +EA+GG + ++RE M Y+ + L+ V ++E L++ P F WEV +
Sbjct: 64 SSFKITRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVADL 123
Query: 196 LTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYT 255
++K + + NPQ+ ++E +H+A Y ALA+ L P+ I ++ S L +FV ++T
Sbjct: 124 QPQLKIDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKVTSVELHDFVQNHFT 183
Query: 256 GPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVL 315
RM L GV H L +VAE LL+ + K+ Y GG+ R Q +GD L H +
Sbjct: 184 SARMALVGLGVSHPVLKNVAEQLLNIRGGL-GLSGAKAKYRGGEIREQ--NGDSLVHAAI 240
Query: 316 AFELP--GGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFS 373
E GG +A +VLQ +L S LY+ V Q S
Sbjct: 241 VAESAAIGG----AEANAFSVLQHVLGANPHVKRGLNAT---SSLYQAVAKGVHQPFDVS 293
Query: 374 AFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAIL 433
AF+ Y+ SG+FG + + + + I A ++ ++A G V + AK K+ L
Sbjct: 294 AFNASYSDSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQ-GNVSNENVQAAKNKLKAKYL 352
Query: 434 MNLESRMVVSEDIGRQVLTYG 454
M++ES E++G Q L G
Sbjct: 353 MSVESSEGFLEEVGSQALAAG 373
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/382 (31%), Positives = 195/382 (51%), Gaps = 15/382 (3%)
Query: 76 PGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR 135
P +I+ LPNG+ IAS + SP ++I +++ GS YE+ + GT+HLL + +T+
Sbjct: 4 PQDLEITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLLRLASSLTTKGA 63
Query: 136 SHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQ 195
S +I R +EA+GG + ++RE M Y+ + L+ V ++E L++ P F WEV +
Sbjct: 64 SSFKITRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVADL 123
Query: 196 LTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYT 255
++K + + NPQ+ ++E +H+A Y ALA+ L P+ I ++ S L +FV ++T
Sbjct: 124 QPQLKIDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKVTSVELHDFVQNHFT 183
Query: 256 GPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVL 315
RM L GV H L +VAE LL+ + K+ Y GG+ R Q +GD L H +
Sbjct: 184 SARMALVGLGVSHPVLKNVAEQLLNIRGGL-GLSGAKAKYRGGEIREQ--NGDSLVHAAI 240
Query: 316 AFELP--GGWHKDKDAMTLTVLQMLLXXX-XXXXXXXXXXXMYSRLYRRVLNEFPQVQSF 372
E GG +A +VLQ +L +Y + + V N F
Sbjct: 241 VAESAAIGG----AEANAFSVLQHVLGANPHVKRGLNATSSLYQAVAKGVHNPF----DV 292
Query: 373 SAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAI 432
SAF+ Y+ SG+FG + + + + I A ++ ++A G V + AK K+
Sbjct: 293 SAFNASYSDSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQ-GNVSNENVQAAKNKLKAKY 351
Query: 433 LMNLESRMVVSEDIGRQVLTYG 454
LM++ES E++G Q L G
Sbjct: 352 LMSVESSEGFLEEVGSQALAAG 373
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 193/385 (50%), Gaps = 14/385 (3%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T++S L NGV++ASE S P ++ +++ GS YES + G + LE +AF+ T+NR
Sbjct: 13 ETQVSQLDNGVRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFLEHLAFKGTKNRPQ 72
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLT 197
+ +EVE++G ++ A +SRE Y AL VP+ VELL D V+N D ++ ++
Sbjct: 73 NALEKEVESMGAHLNAYSSREHTAYYIKALSKDVPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 198 KVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTG 256
+ E+ E + + ++ +H+ + G LA + P I +L+ L E+++ +YT
Sbjct: 133 VIVRELQENDTSMREVVFNYLHATAFQGTGLAQSVEGPSENIRKLSRADLTEYLSTHYTA 192
Query: 257 PRMVLAAS-GVEHDQLVSVAEPLLSDLPSIHPREE----PKSVYTGGDYRCQADSGDQLT 311
PRMVLAA+ GVEH QL+ +A+ +P + + K +TG R + D G L
Sbjct: 193 PRMVLAAAGGVEHQQLLELAQKHFGGVPFTYDDDAVPTLSKCRFTGSQIRHRED-GLPLA 251
Query: 312 HFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 371
H +A E PG H D L LQ+ S + QS
Sbjct: 252 HVAIAVEGPGWAHPD-----LVALQVANAIIGHYDRTYGGGLHSSSPLASIAVTNKLCQS 306
Query: 372 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSA 431
F FS Y+ +G+FG + + + + + + T + + ++ R K ++A
Sbjct: 307 FQTFSICYSETGLFGFYFVCDRMSIDDMMFVLQGQWMRLCT--SISESEVLRGKNFLRNA 364
Query: 432 ILMNLESRMVVSEDIGRQVLTYGER 456
++ +L+ V EDIGR++LTYG R
Sbjct: 365 LVSHLDGTTPVCEDIGRELLTYGRR 389
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 186/380 (48%), Gaps = 9/380 (2%)
Query: 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRN 134
P + + LPNG+ IAS + +P + I L++ GS YE+ + GT+HLL + +T+
Sbjct: 4 HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKG 63
Query: 135 RSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNE 194
S +I R +EA+GG + +++RE M Y+ + L+ V ++E L++ P F WEV
Sbjct: 64 ASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAA 123
Query: 195 QLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENY 254
+++ + + NPQ+ ++E +H+A Y ALAN L P+ I ++ L ++V ++
Sbjct: 124 LQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHF 183
Query: 255 TGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFV 314
T RM L GV H L VAE L+ + K+ Y GG+ R Q +GD L H
Sbjct: 184 TSARMALIGLGVSHPVLKQVAEQFLNIRGGL-GLSGAKAKYHGGEIREQ--NGDSLVHAA 240
Query: 315 LAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSA 374
L E + +A +VLQ +L S LY+ V Q SA
Sbjct: 241 LVAESAAIGSAEANA--FSVLQHVLGAGPHVKRGSNAT---SSLYQAVAKGVHQPFDVSA 295
Query: 375 FSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM 434
F+ Y+ SG+FG + + I A ++ ++A G + + AK K+ LM
Sbjct: 296 FNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKLKAGYLM 354
Query: 435 NLESRMVVSEDIGRQVLTYG 454
++ES +++G Q L G
Sbjct: 355 SVESSEGFLDEVGSQALAAG 374
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 185/380 (48%), Gaps = 9/380 (2%)
Query: 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRN 134
P + + LPNG+ IAS + +P + I L++ GS YE+ + GT+HLL + +T+
Sbjct: 34 HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKG 93
Query: 135 RSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNE 194
S +I R +EA+GG + +++RE M Y+ + L+ V ++E L++ P F WEV
Sbjct: 94 ASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAA 153
Query: 195 QLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENY 254
+++ + + NPQ+ ++E +H+A Y ALAN L P+ I ++ L ++V ++
Sbjct: 154 LQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHF 213
Query: 255 TGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFV 314
T RM L GV H L VAE L+ + K+ Y GG+ R Q +GD L H
Sbjct: 214 TSARMALIGLGVSHPVLKQVAEQFLNIRGGL-GLSGAKAKYHGGEIREQ--NGDSLVHAA 270
Query: 315 LAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSA 374
L E +A +VLQ +L S LY+ V Q SA
Sbjct: 271 LVAE--SAAIGSAEANAFSVLQHVLGAGPHVKRGSNAT---SSLYQAVAKGVHQPFDVSA 325
Query: 375 FSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM 434
F+ Y+ SG+FG + + I A ++ ++A G + + AK K+ LM
Sbjct: 326 FNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKLKAGYLM 384
Query: 435 NLESRMVVSEDIGRQVLTYG 454
++ES +++G Q L G
Sbjct: 385 SVESSEGFLDEVGSQALAAG 404
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 185/380 (48%), Gaps = 9/380 (2%)
Query: 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRN 134
P + + LPNG+ IAS + +P + I L++ GS YE+ + GT+HLL + +T+
Sbjct: 20 HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKG 79
Query: 135 RSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNE 194
S +I R +EA+GG + +++RE M Y+ + L+ V ++E L++ P F WEV
Sbjct: 80 ASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAA 139
Query: 195 QLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENY 254
+++ + + NPQ+ ++E +H+A Y ALAN L P+ I ++ L ++V ++
Sbjct: 140 LQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHF 199
Query: 255 TGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFV 314
T RM L GV H L VAE L+ + K+ Y GG+ R Q +GD L H
Sbjct: 200 TSARMALIGLGVSHPVLKQVAEQFLNIRGGLG-LSGAKAKYHGGEIREQ--NGDSLVHAA 256
Query: 315 LAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSA 374
L E +A +VLQ +L S LY+ V Q SA
Sbjct: 257 LVAE--SAAIGSAEANAFSVLQHVLGAGPHVKRGSNAT---SSLYQAVAKGVHQPFDVSA 311
Query: 375 FSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM 434
F+ Y+ SG+FG + + I A ++ ++A G + + AK K+ LM
Sbjct: 312 FNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKLKAGYLM 370
Query: 435 NLESRMVVSEDIGRQVLTYG 454
++ES +++G Q L G
Sbjct: 371 SVESSEGFLDEVGSQALAAG 390
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 187/385 (48%), Gaps = 14/385 (3%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T++S L NG+++ASE S P ++ +++ GS YES + G + +E +AF+ T+NR
Sbjct: 47 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG 106
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLT 197
+ +EVE++G ++ A ++RE Y AL +P+ VELL D V+N D ++ ++
Sbjct: 107 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 166
Query: 198 KVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTG 256
+ E+ E + + ++ +H+ + G LA + P + +L+ L E+++ +Y
Sbjct: 167 VILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKA 226
Query: 257 PRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKSV----YTGGDYRCQADSGDQLT 311
PRMVLAA+G +EH QL+ +A+ S L + + ++ +TG C + G L
Sbjct: 227 PRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQI-CHREDGLPLA 285
Query: 312 HFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 371
H +A E PG H D A LQ+ S + QS
Sbjct: 286 HVAIAVEGPGWAHPDNVA-----LQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQS 340
Query: 372 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSA 431
F F+ Y +G+ G + + + + + + T +V R K ++A
Sbjct: 341 FQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVL--RGKNLLRNA 398
Query: 432 ILMNLESRMVVSEDIGRQVLTYGER 456
++ +L+ V EDIGR +LTYG R
Sbjct: 399 LVSHLDGTTPVCEDIGRSLLTYGRR 423
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 187/385 (48%), Gaps = 14/385 (3%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T++S L NG+++ASE S P ++ +++ GS YES + G + +E +AF+ T+NR
Sbjct: 13 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG 72
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLT 197
+ +EVE++G ++ A ++RE Y AL +P+ VELL D V+N D ++ ++
Sbjct: 73 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 198 KVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTG 256
+ E+ E + + ++ +H+ + G LA + P + +L+ L E+++ +Y
Sbjct: 133 VILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKA 192
Query: 257 PRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKSV----YTGGDYRCQADSGDQLT 311
PRMVLAA+G +EH QL+ +A+ S L + + ++ +TG C + G L
Sbjct: 193 PRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQI-CHREDGLPLA 251
Query: 312 HFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 371
H +A E PG H D A LQ+ S + QS
Sbjct: 252 HVAIAVEGPGWAHPDNVA-----LQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQS 306
Query: 372 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSA 431
F F+ Y +G+ G + + + + + + T +V R K ++A
Sbjct: 307 FQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVL--RGKNLLRNA 364
Query: 432 ILMNLESRMVVSEDIGRQVLTYGER 456
++ +L+ V EDIGR +LTYG R
Sbjct: 365 LVSHLDGTTPVCEDIGRSLLTYGRR 389
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 187/385 (48%), Gaps = 14/385 (3%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T++S L NG+++ASE S P ++ +++ GS YES + G + +E +AF+ T+NR
Sbjct: 13 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG 72
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLT 197
+ +EVE++G ++ A ++RE Y AL +P+ VELL D V+N D ++ ++
Sbjct: 73 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 198 KVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTG 256
+ E+ E + + ++ +H+ + G LA + P + +L+ L E+++ +Y
Sbjct: 133 VILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKA 192
Query: 257 PRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKSV----YTGGDYRCQADSGDQLT 311
PRMVLAA+G +EH QL+ +A+ S L + + ++ +TG C + G L
Sbjct: 193 PRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQI-CHREDGLPLA 251
Query: 312 HFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 371
H +A E PG H D A LQ+ S + QS
Sbjct: 252 HVAIAVEGPGWAHPDNVA-----LQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQS 306
Query: 372 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSA 431
F F+ Y +G+ G + + + + + + T +V R K ++A
Sbjct: 307 FQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVL--RGKNLLRNA 364
Query: 432 ILMNLESRMVVSEDIGRQVLTYGER 456
++ +L+ V EDIGR +LTYG R
Sbjct: 365 LVSHLDGTTPVCEDIGRSLLTYGRR 389
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 159 bits (401), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 186/385 (48%), Gaps = 14/385 (3%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T ++TL NG+++ASE S P ++ +++G GS YE+ + G + +E +AF+ T+ R
Sbjct: 13 ETNVTTLDNGLRVASEESSQPTCTVGVWIGAGSRYENEKNNGAGYFVEHLAFKGTKKRPC 72
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLT 197
+EVE++G + SREQ + AL +P++VELL D V+N + ++ ++
Sbjct: 73 AAFEKEVESMGAHFNGYTSREQTAFYIKALSKDMPKVVELLADVVQNCALEESQIEKERG 132
Query: 198 KVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTG 256
+ E+ E+ N+ ++ + +H+ + G ALA + I L L ++ ++
Sbjct: 133 VILQELKEMDNDMTNVTFDYLHATAFQGTALARTVEGTTENIKHLTRADLASYIDTHFKA 192
Query: 257 PRMVLAAS-GVEHDQLVSVAEPLLSDLPSIHPREE----PKSVYTGGDYRCQADSGDQLT 311
PRMVLAA+ G+ H +LV A S + + + P+ +TG + R + D +
Sbjct: 193 PRMVLAAAGGISHKELVDAARQHFSGVSFTYKEDAVPILPRCRFTGSEIRAR-DDALPVA 251
Query: 312 HFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 371
H LA E P GW D D + L V ++ + SRL + E S
Sbjct: 252 HVALAVEGP-GW-ADPDNVVLHVANAII--GRYDRTFGGGKHLSSRLAALAV-EHKLCHS 306
Query: 372 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSA 431
F F+ Y+ +G+FG + + A E + + T +V+ RAK +SA
Sbjct: 307 FQTFNTSYSDTGLFGFHFVADPLSIDDMMFCAQGEWMRLCTSTTESEVK--RAKNHLRSA 364
Query: 432 ILMNLESRMVVSEDIGRQVLTYGER 456
++ L+ V E IG +L YG R
Sbjct: 365 MVAQLDGTTPVCETIGSHLLNYGRR 389
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 112/394 (28%), Positives = 185/394 (46%), Gaps = 22/394 (5%)
Query: 76 PGKTKISTLPNGVKIASE-TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRN 134
PG T+ S LPNG+ IA+E + A++ ++V GS E+ + GT H LE +AF+ T+N
Sbjct: 5 PG-TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQN 63
Query: 135 RSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNE 194
R I E+E IG ++ A SRE Y +L+ +P+ V++L D + V + +
Sbjct: 64 RPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIER 123
Query: 195 QLTKVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAEN 253
+ + E EV ++ + +H Y L +L P I + T L++++ +N
Sbjct: 124 ERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKN 183
Query: 254 YTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH-------PREEPKSVYTGGDYRCQAD 305
Y G RMVLA +G V+H++LV A+ +P PR P V+ G+ R +
Sbjct: 184 YKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPR-GPLPVFCRGE-RFIKE 241
Query: 306 SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNE 365
+ TH +A E G D Q ++ S L
Sbjct: 242 NTLPTTHIAIALE--GVSWSAPDYFVALATQAIVGNWDRAIGTGTNSP--SPLAVAASQN 297
Query: 366 FPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISV---ATPGEVDQVQLD 422
S+ +FS Y SG++G+ T S+ + L E++ G++ +++
Sbjct: 298 GSLANSYMSFSTSYADSGLWGMYIVTDSN--EHNVRLIVNEILKEWKRIKSGKISDAEVN 355
Query: 423 RAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 456
RAK K+A+L++L+ + EDIGRQV+T G+R
Sbjct: 356 RAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKR 389
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 185/394 (46%), Gaps = 22/394 (5%)
Query: 76 PGKTKISTLPNGVKIASE-TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRN 134
PG T+ S LPNG+ IA+E + A++ ++V GS E+ + GT H L+ +AF+ T+N
Sbjct: 5 PG-TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLQHLAFKGTQN 63
Query: 135 RSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNE 194
R I E+E IG ++ A SRE Y +L+ +P+ V++L D + V + +
Sbjct: 64 RPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIER 123
Query: 195 QLTKVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAEN 253
+ + E EV ++ + +H Y L +L P I + T L++++ +N
Sbjct: 124 ERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKN 183
Query: 254 YTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH-------PREEPKSVYTGGDYRCQAD 305
Y G RMVLA +G V+H++LV A+ +P PR P V+ G+ R +
Sbjct: 184 YKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPR-GPLPVFCRGE-RFIKE 241
Query: 306 SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNE 365
+ TH +A E G D Q ++ S L
Sbjct: 242 NTLPTTHIAIALE--GVSWSAPDYFVALATQAIVGNWDRAIGTGTNSP--SPLAVAASQN 297
Query: 366 FPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISV---ATPGEVDQVQLD 422
S+ +FS Y SG++G+ T S+ + L E++ G++ +++
Sbjct: 298 GSLANSYMSFSTSYADSGLWGMYIVTDSN--EHNVRLIVNEILKEWKRIKSGKISDAEVN 355
Query: 423 RAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 456
RAK K+A+L++L+ + EDIGRQV+T G+R
Sbjct: 356 RAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKR 389
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 163/359 (45%), Gaps = 19/359 (5%)
Query: 83 TLPNGVKIASET-SVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIV 141
TL NGV+I +E S SI ++VG GS YES G +H LE M F+ T RS I
Sbjct: 6 TLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIA 65
Query: 142 REVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
++IGG V A S+E Y L + + ++ L D + F E+ ++ V
Sbjct: 66 EFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFE 125
Query: 202 EISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMV 260
EI V + P ++ + + SA Y +L P+L +N N +L ++ YTG +V
Sbjct: 126 EIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFYTGDYVV 185
Query: 261 LAASGVEHDQLVSVAEPLLSDL-PSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFEL 319
++ +G HD+L+ + S + P+ + + K ++ R + H L +
Sbjct: 186 ISVAGNVHDELIDKIKETFSQVKPTTYNYQGEKPMFLPN--RIVRKKETEQAHLCLGY-- 241
Query: 320 PGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIY 379
PG DKD L +L +L M SRL++ + + S ++ + +
Sbjct: 242 PGLPIGDKDVYALVLLNNVL-----------GGSMSSRLFQDIREKRGLCYSVFSYHSSF 290
Query: 380 NHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLES 438
SGM I TG D + + + +E S + + +L+ K+ K +++++LES
Sbjct: 291 RDSGMLTIYAGTGHDQLDDLV-YSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLES 348
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|B Chain B, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|M Chain M, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KB9|B Chain B, Yeast Cytochrome Bc1 Complex
pdb|1P84|B Chain B, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|B Chain B, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|B Chain B, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|M Chain M, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|B Chain B, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|M Chain M, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 352
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 9/208 (4%)
Query: 90 IASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGG 149
+++ + + ++++++ V GS Y + G HLL R F++T RS L++VRE E +GG
Sbjct: 3 VSARDAPTKISTLAVKVHGGSRYATKD--GVAHLLNRFNFQNTNTRSALKLVRESELLGG 60
Query: 150 NVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQ-LTKVKSEISEVSN 208
+++ RE + LK +P V L D + F E+ E L + + +
Sbjct: 61 TFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQ 120
Query: 209 NPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VE 267
P + +++ + L NPLL + R++ +++F + YT + ++ VE
Sbjct: 121 CPVKSAEDQLYAITFRKGLGNPLLY--DGVERVSLQDIKDFADKVYTKENLEVSGENVVE 178
Query: 268 HDQLVSVAEPLLSDLP---SIHPREEPK 292
D V E LLS LP S+ + EPK
Sbjct: 179 ADLKRFVDESLLSTLPAGKSLVSKSEPK 206
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 117/270 (43%), Gaps = 16/270 (5%)
Query: 82 STLPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRI 140
+TLPNG+K+ E +P ++ GS+ E+ + G H LE M F+ T++
Sbjct: 10 TTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEF 69
Query: 141 VREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK 200
+ V A+GG A +R+ Y + + +++ L D + N V D +++ +
Sbjct: 70 SKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIA 129
Query: 201 SEIS-EVSNNPQSLLLEAIHSAGYSGALANPLLAP----ESAINRLNSTLLEEFVAENYT 255
E + P+S EA+ +A Y +A+P P + I + + + ++ Y
Sbjct: 130 EERRWRTDDKPRSKAYEALMAASY---VAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWY- 185
Query: 256 GPR--MVLAASGVEHDQLVSVAEPLLSDLPSIH--PREEPKSVYTGGDYRCQADSGDQLT 311
GP V+ VEH+ + +AE L + R++ G R + +L
Sbjct: 186 GPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAELP 245
Query: 312 HFVLAFELPG--GWHKDKDAMTLTVLQMLL 339
+ LA+ +P K +DA L +L +L
Sbjct: 246 YLALAWHVPAIVDLDKSRDAYALEILAAVL 275
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 117/270 (43%), Gaps = 16/270 (5%)
Query: 82 STLPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRI 140
+TLPNG+K+ E +P ++ GS+ E+ + G H LE M F+ T++
Sbjct: 10 TTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEF 69
Query: 141 VREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK 200
+ V A+GG A +R+ Y + + +++ L D + N V D +++ +
Sbjct: 70 SKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIA 129
Query: 201 SEIS-EVSNNPQSLLLEAIHSAGYSGALANPLLAP----ESAINRLNSTLLEEFVAENYT 255
E + P+S EA+ +A Y +A+P P + I + + + ++ Y
Sbjct: 130 EERRWRTDDKPRSKAYEALMAASY---VAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWY- 185
Query: 256 GPR--MVLAASGVEHDQLVSVAEPLLSDLPSIH--PREEPKSVYTGGDYRCQADSGDQLT 311
GP V+ VEH+ + +AE L + R++ G R + +L
Sbjct: 186 GPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAELP 245
Query: 312 HFVLAFELPG--GWHKDKDAMTLTVLQMLL 339
+ LA+ +P K +DA L +L +L
Sbjct: 246 YLALAWHVPAIVDLDKSRDAYALEILAAVL 275
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 108/235 (45%), Gaps = 16/235 (6%)
Query: 80 KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
+++ L NG+ +A+E + + AS+ + G G+ E+P + G ++L + + F S N +
Sbjct: 2 EVTQLSNGIVVATEHNPAHTASVGVVFGSGAANENPYNNGVSNLWKNI-FLSKENSA--V 58
Query: 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDC-VRNPVFLDWEVNEQLTK 198
+E A+ N+ SR+ Y +L + ++ L ++ L N + TK
Sbjct: 59 AAKEGLALSSNI----SRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATK 114
Query: 199 VKSEISEV----SNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAEN 253
KS + +V N+ + +LE +HS + L+ P ++ L LE F +
Sbjct: 115 -KSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNH 173
Query: 254 YTGPRMVLAASG-VEHDQLV-SVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADS 306
+ V+ +G ++H+ LV S+ LS P + K+ + G + R + D+
Sbjct: 174 FLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDT 228
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 431
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 80 KISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHL 138
+++ L NG+ +A+E + S AS+ + G G+ E+P + G ++L + + F S N +
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNI-FLSKENSA-- 58
Query: 139 RIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDC-VRNPVFLDWEVNEQLT 197
+E A+ N+ SR+ Y +L + ++ L ++ L N + T
Sbjct: 59 VAAKEGLALSSNI----SRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEAT 114
Query: 198 KVKSEISEV----SNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAE 252
K KS + +V N+ + +LE +HS + L+ P ++ L LE F
Sbjct: 115 K-KSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANN 173
Query: 253 NYTGPRMVLAASG-VEHDQLV-SVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADS 306
++ V+ +G ++H+ LV S+ LS P + K+ + G + R + D+
Sbjct: 174 HFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDT 229
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H LE M F T+
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLEHMLFLGTKKYPKENEYS 99
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 100 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 159
Query: 202 E 202
E
Sbjct: 160 E 160
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 99
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 100 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 159
Query: 202 E 202
E
Sbjct: 160 E 160
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 99
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 100 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 159
Query: 202 E 202
E
Sbjct: 160 E 160
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 27 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 86
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 87 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 146
Query: 202 E 202
E
Sbjct: 147 E 147
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 99
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 100 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 159
Query: 202 E 202
E
Sbjct: 160 E 160
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 69 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 128
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 129 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 188
Query: 202 E 202
E
Sbjct: 189 E 189
>pdb|3V6O|A Chain A, Leptin Receptor-Antibody Complex
pdb|3V6O|B Chain B, Leptin Receptor-Antibody Complex
Length = 206
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 280 SDLPSIHPREEPKSVY--TGGDYRC 302
SD+PSIHP EPK Y + G Y C
Sbjct: 47 SDIPSIHPISEPKDCYLQSDGFYEC 71
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 122 HLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELL 178
++ E F+ R +H+ + +G N++ S R LK Y+ E V+L
Sbjct: 56 YIFENFVFQKNRKINHIIKTSKYSTVGFNIENSYDRLMKTIKEHKLKNYIKESVKLF 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,362,490
Number of Sequences: 62578
Number of extensions: 407620
Number of successful extensions: 1064
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 999
Number of HSP's gapped (non-prelim): 34
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)