Query 012445
Match_columns 463
No_of_seqs 231 out of 1578
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 02:43:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2067 Mitochondrial processi 100.0 3.9E-80 8.5E-85 575.7 31.4 383 75-461 21-411 (472)
2 KOG0960 Mitochondrial processi 100.0 2.6E-62 5.7E-67 455.9 33.5 377 77-461 32-415 (467)
3 COG0612 PqqL Predicted Zn-depe 100.0 5.9E-48 1.3E-52 394.2 37.0 370 77-459 15-395 (438)
4 TIGR02110 PQQ_syn_pqqF coenzym 100.0 5.3E-45 1.2E-49 380.8 41.8 331 81-430 2-348 (696)
5 PRK15101 protease3; Provisiona 100.0 2.5E-41 5.3E-46 377.1 39.3 361 75-451 40-420 (961)
6 PTZ00432 falcilysin; Provision 100.0 1.5E-33 3.2E-38 312.5 36.6 360 77-454 90-525 (1119)
7 KOG2583 Ubiquinol cytochrome c 100.0 1.2E-31 2.6E-36 251.9 34.5 348 78-438 22-370 (429)
8 PRK15101 protease3; Provisiona 100.0 8.1E-31 1.7E-35 292.7 34.5 374 53-455 499-885 (961)
9 COG1025 Ptr Secreted/periplasm 100.0 4.9E-30 1.1E-34 266.4 34.7 344 75-434 20-381 (937)
10 KOG0959 N-arginine dibasic con 100.0 1.7E-28 3.7E-33 259.3 35.5 360 75-450 24-403 (974)
11 PF00675 Peptidase_M16: Insuli 99.9 1.5E-22 3.3E-27 175.8 16.0 146 89-234 1-148 (149)
12 COG1026 Predicted Zn-dependent 99.9 3.6E-21 7.9E-26 201.4 27.3 343 78-438 21-393 (978)
13 PF05193 Peptidase_M16_C: Pept 99.9 7.3E-22 1.6E-26 176.8 17.6 175 240-428 1-184 (184)
14 COG1025 Ptr Secreted/periplasm 99.9 3.7E-19 8.1E-24 185.8 33.2 343 82-450 505-860 (937)
15 KOG0959 N-arginine dibasic con 99.8 5.8E-16 1.3E-20 164.8 33.9 346 80-452 511-877 (974)
16 KOG2019 Metalloendoprotease HM 99.8 1.9E-16 4.1E-21 158.2 23.5 336 85-438 60-429 (998)
17 KOG0961 Predicted Zn2+-depende 99.7 5.8E-16 1.3E-20 154.5 23.2 334 87-440 29-392 (1022)
18 COG1026 Predicted Zn-dependent 99.7 5.5E-15 1.2E-19 155.5 27.7 339 71-434 520-896 (978)
19 KOG2019 Metalloendoprotease HM 99.6 1.3E-13 2.7E-18 138.3 23.7 331 80-433 562-925 (998)
20 PTZ00432 falcilysin; Provision 99.6 4.2E-13 9.1E-18 150.1 29.3 327 83-435 664-1043(1119)
21 KOG0961 Predicted Zn2+-depende 98.9 5.2E-08 1.1E-12 98.6 18.3 323 93-436 556-922 (1022)
22 PF03410 Peptidase_M44: Protei 98.3 3.5E-05 7.7E-10 75.5 17.5 185 82-289 2-196 (590)
23 PF08367 M16C_assoc: Peptidase 98.3 1.5E-05 3.2E-10 75.1 13.7 132 70-203 62-206 (248)
24 PHA03081 putative metalloprote 98.2 0.00012 2.6E-09 72.0 16.8 183 82-288 2-195 (595)
25 PF00675 Peptidase_M16: Insuli 96.5 0.25 5.4E-06 42.2 16.1 132 304-455 6-139 (149)
26 KOG0960 Mitochondrial processi 95.8 0.22 4.7E-06 48.7 13.2 177 87-267 258-450 (467)
27 TIGR02110 PQQ_syn_pqqF coenzym 95.7 0.12 2.6E-06 55.6 12.2 80 309-405 614-693 (696)
28 KOG2067 Mitochondrial processi 94.6 0.16 3.6E-06 49.5 8.3 121 143-265 320-442 (472)
29 COG0612 PqqL Predicted Zn-depe 92.4 3 6.5E-05 42.7 14.0 80 187-267 352-432 (438)
30 PF05193 Peptidase_M16_C: Pept 87.3 5.1 0.00011 34.6 9.5 108 87-199 67-184 (184)
31 PF09851 SHOCT: Short C-termin 84.2 1.4 3.1E-05 26.6 2.9 26 404-429 5-30 (31)
32 PF08367 M16C_assoc: Peptidase 80.7 50 0.0011 30.9 13.8 120 309-440 90-214 (248)
33 PF01729 QRPTase_C: Quinolinat 36.8 34 0.00075 29.9 3.0 42 236-277 104-147 (169)
34 COG5023 Tubulin [Cytoskeleton] 35.1 1.7E+02 0.0037 29.0 7.5 96 346-446 139-250 (443)
35 PF05120 GvpG: Gas vesicle pro 31.3 1.5E+02 0.0034 22.3 5.3 34 401-434 34-67 (79)
36 KOG1374 Gamma tubulin [Cytoske 30.6 39 0.00084 33.4 2.4 45 331-375 118-174 (448)
37 COG0157 NadC Nicotinate-nucleo 26.1 1.2E+02 0.0027 28.7 4.8 42 236-277 212-254 (280)
38 cd04922 ACT_AKi-HSDH-ThrA_2 AC 24.2 1.9E+02 0.0042 19.9 4.8 46 138-183 19-65 (66)
39 PRK06978 nicotinate-nucleotide 23.5 1.5E+02 0.0031 28.6 4.9 40 236-277 229-269 (294)
40 PRK09016 quinolinate phosphori 23.0 1.5E+02 0.0032 28.7 4.8 40 236-277 232-272 (296)
41 PRK07896 nicotinate-nucleotide 22.9 1.6E+02 0.0034 28.4 5.0 42 236-277 223-266 (289)
42 cd04916 ACT_AKiii-YclM-BS_2 AC 22.6 2.2E+02 0.0048 19.6 4.8 46 139-184 20-66 (66)
43 PRK08385 nicotinate-nucleotide 22.6 1.5E+02 0.0032 28.3 4.8 41 237-277 207-251 (278)
44 PF09186 DUF1949: Domain of un 22.4 2.5E+02 0.0054 18.7 6.1 46 137-182 8-53 (56)
45 PRK06559 nicotinate-nucleotide 22.2 1.5E+02 0.0032 28.5 4.7 40 236-277 221-261 (290)
46 cd04936 ACT_AKii-LysC-BS-like_ 20.6 2.4E+02 0.0051 19.0 4.6 44 138-182 18-61 (63)
No 1
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-80 Score=575.68 Aligned_cols=383 Identities=50% Similarity=0.757 Sum_probs=365.4
Q ss_pred CCCceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeee
Q 012445 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (463)
Q Consensus 75 ~~~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (463)
++..++.++|+||+||++++++++.+.++++|++|+++|.+...|++|++|+|+|++|.+++..++.+.||.+||+++++
T Consensus 21 ~~~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cq 100 (472)
T KOG2067|consen 21 EPSNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQ 100 (472)
T ss_pred ccccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCccccc
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 012445 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLA 233 (463)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~ 233 (463)
++++.+.|..++.+++++.++++|+|.+++|+|++|+++.++..++-|+.+...+|+..+.+.+|.++| +++++.|.++
T Consensus 101 sSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~c 180 (472)
T KOG2067|consen 101 SSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLC 180 (472)
T ss_pred ccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8899999999
Q ss_pred ChHhhccCCHHHHHHHHHhhccCCCeEEEEeCCCHHHHHHHHHhhhCCCCCCC--CCCCCCCCCCCCceEEecCC-----
Q 012445 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIH--PREEPKSVYTGGDYRCQADS----- 306 (463)
Q Consensus 234 ~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G~~~~~l~~l~~~~~~~lp~~~--~~~~~~~~~~~~~~~~~~~~----- 306 (463)
+++.|++|+.+.|.+|.+++|+|.||+++.|||+||++++++++||++||+.. ....++.+|+||...+..+.
T Consensus 181 p~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~~aQYtGG~~~~~~d~~~~~~ 260 (472)
T KOG2067|consen 181 PEENIDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQVTG 260 (472)
T ss_pred ChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccchhhccccccccCCCCccccC
Confidence 99999999999999999999999999999999999999999999999999853 33456679999976665442
Q ss_pred CCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEE
Q 012445 307 GDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 386 (463)
Q Consensus 307 ~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~ 386 (463)
+..-+||+++|++++ ++++|.+++.+|+.+||||||||||||||||+||||.+|.++++|+|++.|++..|.|+|+|+
T Consensus 261 g~EltHv~lg~Eg~~--~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfg 338 (472)
T KOG2067|consen 261 GPELTHVVLGFEGCS--WNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFG 338 (472)
T ss_pred ccceeeeeEeeccCC--CCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeE
Confidence 115799999999996 588899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCccCCCCC
Q 012445 387 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERYGWRP 461 (463)
Q Consensus 387 i~~~~~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~~~~~~~ 461 (463)
|+.+++|+++.+++..+.+|+..+.. | ++++|++|||.++++.++||+|++...+||+|||++++|.|++++|
T Consensus 339 i~~s~~P~~a~~aveli~~e~~~~~~-~-v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g~rk~p~e 411 (472)
T KOG2067|consen 339 IYASAPPQAANDAVELIAKEMINMAG-G-VTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTGERKPPDE 411 (472)
T ss_pred EeccCCHHHHHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhccCcCCHHH
Confidence 99999999999999999999999987 5 9999999999999999999999999999999999999999999875
No 2
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-62 Score=455.87 Aligned_cols=377 Identities=31% Similarity=0.564 Sum_probs=354.0
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeeec
Q 012445 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (463)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (463)
|+++.++|+||++|+.++.....+++++||++||++|++++.|.+||||||+|+||++++...++.+++.+|+.+|+|++
T Consensus 32 P~t~vttL~NGlrVaTE~~~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAytS 111 (467)
T KOG0960|consen 32 PETEVTTLPNGLRVATEHNSASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYTS 111 (467)
T ss_pred CcceEEEcCCCcEEEeccCCCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhccccc
Confidence 57799999999999999887789999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 012445 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 235 (463)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~ 235 (463)
|+++.|+.+++++++++++++|.|++.+..+.+.+++++|+.++.|+.+...+-...+++.+|..+| ++|++++.+|+.
T Consensus 112 ReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~ 191 (467)
T KOG0960|consen 112 REQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPS 191 (467)
T ss_pred ccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCC---CC-CCCCCCCCCceEEecCCCCCc
Q 012445 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHP---RE-EPKSVYTGGDYRCQADSGDQL 310 (463)
Q Consensus 236 ~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~---~~-~~~~~~~~~~~~~~~~~~~~~ 310 (463)
+.|++|+.+||++|.+.||.++||+++.+| |+||++++++++||+++|.... ++ .+++.|.|.++++..+. .|.
T Consensus 192 enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~~~~~~~~~FtgsEvR~rdd~-lP~ 270 (467)
T KOG0960|consen 192 ENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVPLVPPARFTGSEVRVRDDD-LPL 270 (467)
T ss_pred hhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcCCCCCCCccccCceeeecCCC-Cch
Confidence 999999999999999999999999999999 9999999999999999875332 22 23467899998887663 289
Q ss_pred eEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEEEEE
Q 012445 311 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 390 (463)
Q Consensus 311 ~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~~~ 390 (463)
+++++++++.+ | .++|+.++.|.++|+|....+-.||+--| |+|-+.+-+. +++.++.+|+..|.++|+|++|+.
T Consensus 271 a~~AiAVEG~~-w-~~pD~~~l~van~iiG~wdr~~g~g~~~~--s~La~~~~~~-~l~~sfqsFnt~YkDTGLwG~y~V 345 (467)
T KOG0960|consen 271 AHIAIAVEGVS-W-AHPDYFALMVANTIIGNWDRTEGGGRNLS--SRLAQKIQQD-QLCHSFQSFNTSYKDTGLWGIYFV 345 (467)
T ss_pred hheeeeEecCC-c-CCccHHHHHHHHHHhhhhhcccCCccCCc--cHHHHHHHHH-HHHHHHhhhhcccccccceeEEEE
Confidence 99999999996 4 99999999999999999888887777777 9999888776 789999999999999999999999
Q ss_pred e-CcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCccCCCCC
Q 012445 391 T-GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERYGWRP 461 (463)
Q Consensus 391 ~-~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~~~~~~~ 461 (463)
| ++..++.++..+..+..++.. .+|+.|++|||++++.++...+++..-++++||||+|+||++.++.|
T Consensus 346 ~~~~~~iddl~~~vl~eW~rL~~--~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grri~l~E 415 (467)
T KOG0960|consen 346 TDNLTMIDDLIHSVLKEWMRLAT--SVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRRIPLAE 415 (467)
T ss_pred ecChhhHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCcCChHH
Confidence 9 789999999999999999987 49999999999999999999999999999999999999999999864
No 3
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=5.9e-48 Score=394.23 Aligned_cols=370 Identities=27% Similarity=0.411 Sum_probs=320.6
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeee
Q 012445 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 155 (463)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 155 (463)
.+++..+|+||+++++.+.+ .+.+++.+++++|+..|++...|++|++|||+|+|+.+++..++.+.++..|+..++++
T Consensus 15 ~~~~~~~L~nGl~~~~~~~~~~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~t 94 (438)
T COG0612 15 PGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFT 94 (438)
T ss_pred ccceEEEcCCCCEEEEEeCCCCCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeeccc
Confidence 35899999999999987777 68999999999999999999999999999999999999888899999999999999999
Q ss_pred ccceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 012445 156 SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAP 234 (463)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~ 234 (463)
+.+.+.|++++.+++++.+|+++.+.+.+|.|++++|+++|+.+.+|++...++|...+.+.++..+| +||+++++.|+
T Consensus 95 s~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~ 174 (438)
T COG0612 95 SFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGT 174 (438)
T ss_pred cchhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCC-CCCCCCCCCCCCCC-ceEE-ec--CCCC
Q 012445 235 ESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPS-IHPREEPKSVYTGG-DYRC-QA--DSGD 308 (463)
Q Consensus 235 ~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~-~~~~~~~~~~~~~~-~~~~-~~--~~~~ 308 (463)
.+.|.+++.++|++||++||+|+||+++||| ++++++..+++++|+.||. .+....+..++..+ .... .. ....
T Consensus 175 ~e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (438)
T COG0612 175 EESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDL 254 (438)
T ss_pred HHHHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCccCCCCCCCCccccCCCceEEecCCCCchh
Confidence 9999999999999999999999999999999 9999999999999999997 22222222223233 2222 21 1222
Q ss_pred CceEEEEEeecCCCCCCCc-chHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEE
Q 012445 309 QLTHFVLAFELPGGWHKDK-DAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI 387 (463)
Q Consensus 309 ~~~~v~l~f~~~~~~~~~~-~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i 387 (463)
.++++.++|+.+. ...+ +++++.+++.++||+ ++||||+++|+++|++|+++++...+.+.+.+.+
T Consensus 255 ~~~~~~~g~~~~~--~~~~~~~~~~~l~~~llgg~-----------~~SrLf~~~re~~glay~~~~~~~~~~~~~~~~~ 321 (438)
T COG0612 255 EQAWLALGYPGPD--YDSPDDYAALLLLNGLLGGG-----------FSSRLFQELREKRGLAYSVSSFSDFLSDSGLFSI 321 (438)
T ss_pred hhhhhhccccCcC--cCcchhhHHHHHHHHHhCCC-----------cchHHHHHHHHhcCceeeeccccccccccCCceE
Confidence 5788889999886 4444 788999999999876 5599999999999999999998888888899999
Q ss_pred EEEeCcccHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCccCCC
Q 012445 388 QGTTGSDFVSKAIDLAARELISVATP--GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERYGW 459 (463)
Q Consensus 388 ~~~~~~~~~~~~i~~~~~~l~~l~~~--g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~~~~~ 459 (463)
++.+.+.+..++.+.+.+++.++++. +.+++++++++|..+.+.+....+++...++.+++.....+....+
T Consensus 322 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 395 (438)
T COG0612 322 YAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSLITL 395 (438)
T ss_pred EEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCccCH
Confidence 99998666555555555555555443 2389999999999999999999999999999999877754554443
No 4
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=5.3e-45 Score=380.82 Aligned_cols=331 Identities=17% Similarity=0.165 Sum_probs=284.9
Q ss_pred EEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHH-HHHHHHHHcCCeeeeeeccc
Q 012445 81 ISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHL-RIVREVEAIGGNVQASASRE 158 (463)
Q Consensus 81 ~~~L~NG~~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~-~l~~~l~~~g~~~~~~~~~~ 158 (463)
..+|+||++|++...+ .+.+++.++|++||.+|+++..|++||+|||+|+||++++.. ++.+.++.+|+.+|++|+.+
T Consensus 2 ~~tL~NGLrVllv~~p~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d 81 (696)
T TIGR02110 2 RITLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLER 81 (696)
T ss_pred eEEcCCCCEEEEEECCCCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCC
Confidence 4689999999965554 689999999999999999999999999999999999999985 79999999999999999999
Q ss_pred eeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChHh
Q 012445 159 QMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESA 237 (463)
Q Consensus 159 ~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 237 (463)
+++|++++++++++.+|+++.+++.+|.|++++|+++|+.+++|+++..++|...+.+.+...+| +|||+++..|+.++
T Consensus 82 ~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~es 161 (696)
T TIGR02110 82 TTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRDS 161 (696)
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hccCC---HHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCC--CCCCCCCceEEecCCCCCce
Q 012445 238 INRLN---STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTGGDYRCQADSGDQLT 311 (463)
Q Consensus 238 l~~i~---~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 311 (463)
|+.++ .++|++||+++|.++||+++|+| +++++++++++++|+.||....+... .+.+..+...+... ..++.
T Consensus 162 L~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~q~ 240 (696)
T TIGR02110 162 LALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAAGGECAQAPPAPLLRFDRLTLAGG-SEPRL 240 (696)
T ss_pred HhCcccchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCceeEEEec-CcceE
Confidence 99876 99999999999999999999999 99999999999999999866543221 22223332333222 12566
Q ss_pred EEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcc--eEEEEE
Q 012445 312 HFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSG--MFGIQG 389 (463)
Q Consensus 312 ~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~--~~~i~~ 389 (463)
++.+.++.+. ..+ ..++.+++.+|+++ |.++|+.+||+ +|++|++++.. .+.+.+ .|.|++
T Consensus 241 ~l~~~~p~~~--~~d--~~al~lL~~iLg~g-----------~sSrL~~~LRe-~GLaysV~s~~-~~~~~g~~lf~I~~ 303 (696)
T TIGR02110 241 WLLFALAGLP--ATA--RDNVTLLCEFLQDE-----------APGGLLAQLRE-RGLAESVAATW-LYQDAGQALLALEF 303 (696)
T ss_pred EEEEeecCCC--CCC--hHHHHHHHHHhCCC-----------cchHHHHHHHH-CCCEEEEEEec-cccCCCCcEEEEEE
Confidence 6666665543 333 34579999999987 44999999997 79999999865 455555 899999
Q ss_pred Ee---CcccHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHH
Q 012445 390 TT---GSDFVSKAIDLAARELISVATP--GEVDQVQLDRAKQSTKS 430 (463)
Q Consensus 390 ~~---~~~~~~~~i~~~~~~l~~l~~~--g~vt~~el~~aK~~~~~ 430 (463)
.+ .+++.+++++.+.++|..++++ + ++.+|++++|+.-..
T Consensus 304 ~lt~~~~~~~~~v~~~i~~~L~~L~~~~~~-~~~eel~rlk~~~~~ 348 (696)
T TIGR02110 304 SARCISAAAAQQIEQLLTQWLGALAEQTWA-EQLEHYAQLAQRRFQ 348 (696)
T ss_pred EEcCCCccCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHhhhh
Confidence 97 3568999999999999999887 5 999999999998444
No 5
>PRK15101 protease3; Provisional
Probab=100.00 E-value=2.5e-41 Score=377.06 Aligned_cols=361 Identities=14% Similarity=0.158 Sum_probs=303.9
Q ss_pred CCCceEEEEcCCCcEEEE-ecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCC-HHHHHHHHHHcCCeee
Q 012445 75 EPGKTKISTLPNGVKIAS-ETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGNVQ 152 (463)
Q Consensus 75 ~~~~~~~~~L~NG~~v~~-~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s-~~~l~~~l~~~g~~~~ 152 (463)
++..++..+|+||++|++ .+...+.+.+.+++++|+.+|++...|+|||+|||+|+||++++ ..++.+.++.+||.+|
T Consensus 40 d~~~~~~~~L~NGL~v~l~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~N 119 (961)
T PRK15101 40 DPRQYQAIRLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHN 119 (961)
T ss_pred CccceEEEEeCCCCEEEEEeCCCCcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCcc
Confidence 346888999999999996 45456899999999999999999999999999999999999996 5789999999999999
Q ss_pred eeeccceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCC
Q 012445 153 ASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 231 (463)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~ 231 (463)
++|+.++|.|++++++++++.+|+++.+++.+|.|++++++++|+.+.+|++...++|...+.+.+...+| +||++++.
T Consensus 120 A~T~~d~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~ 199 (961)
T PRK15101 120 ASTASYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDGMRMAQVSAETINPAHPGSRFS 199 (961)
T ss_pred ceECCCceEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999998888999999999999999 99999999
Q ss_pred CCChHhhccC----CHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCC--CCCCCC---CCceE
Q 012445 232 LAPESAINRL----NSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--PKSVYT---GGDYR 301 (463)
Q Consensus 232 ~~~~~~l~~i----~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~--~~~~~~---~~~~~ 301 (463)
.|+.++|.++ +.++|++||++||.|++|+++|+| ++++++.++++++|++||+...+.. ..+.+. .+...
T Consensus 200 ~G~~etl~~~~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (961)
T PRK15101 200 GGNLETLSDKPGSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPEITVPVVTDAQKGIII 279 (961)
T ss_pred CCCHHHhhcCCchHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCHHHcCeEE
Confidence 9999999997 699999999999999999999999 9999999999999999987643211 112221 12222
Q ss_pred EecCCCCCceEEEEEeecCCCCCC-CcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeeccc-
Q 012445 302 CQADSGDQLTHFVLAFELPGGWHK-DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIY- 379 (463)
Q Consensus 302 ~~~~~~~~~~~v~l~f~~~~~~~~-~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~- 379 (463)
...+ ..++..+.+.|+.|. .. ..+.....++..+|+++++ +.|+..|+ ++||+|+++++...+
T Consensus 280 ~~~~-~~~~~~l~l~~~~p~--~~~~~~~~~~~~l~~ll~~~~~-----------g~l~~~L~-~~gla~~v~s~~~~~~ 344 (961)
T PRK15101 280 HYVP-AQPRKVLRVEFRIDN--NSAKFRSKTDEYISYLIGNRSP-----------GTLSDWLQ-KQGLAEGISAGADPMV 344 (961)
T ss_pred EEEE-CCCCcEEEEEEecCC--cHHHHhhCHHHHHHHHhcCCCC-----------CcHHHHHH-HcCccceeeecccccc
Confidence 2122 226788999999986 22 2223356789999987643 56776664 779999999876533
Q ss_pred -CCcceEEEEEEeCcc---cHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHH
Q 012445 380 -NHSGMFGIQGTTGSD---FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN-LESRMVVSEDIGRQVL 451 (463)
Q Consensus 380 -~~~~~~~i~~~~~~~---~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~-~~s~~~~~~~l~~~~l 451 (463)
.+.+.|.|++.+.++ +.+++++.+.++|+.++++| +++++|+++|+.+...+... ...+...+..++..+.
T Consensus 345 ~~~~g~f~i~~~~~~~~~~~~~~v~~~i~~~i~~l~~~g-~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (961)
T PRK15101 345 DRNSGVFAISVSLTDKGLAQRDQVVAAIFSYLNLLREKG-IDKSYFDELAHVLDLDFRYPSITRDMDYIEWLADTML 420 (961)
T ss_pred CCCceEEEEEEEcChHHHHhHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHhccccCCCCCChHHHHHHHHHHhh
Confidence 467899999999884 78999999999999999998 99999999999988877543 3445556677777654
No 6
>PTZ00432 falcilysin; Provisional
Probab=100.00 E-value=1.5e-33 Score=312.54 Aligned_cols=360 Identities=15% Similarity=0.145 Sum_probs=285.8
Q ss_pred CceEEEEcCCCcEEEEecCCC---CeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcC--Cee
Q 012445 77 GKTKISTLPNGVKIASETSVS---PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIG--GNV 151 (463)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~~---~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g--~~~ 151 (463)
..+...-.+||++|++...+. +...+.++++.|+ ....|++|++|||+|+|+++++..++...++..| +.+
T Consensus 90 ~~~~~~H~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~----~d~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~l 165 (1119)
T PTZ00432 90 VATVYSHKKTGLQVISLKTNDSSGKEMCFDFYVPTPP----HNDKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFL 165 (1119)
T ss_pred EEEEEEEcCCCCEEEEEecCCCccceeEEEEEecCCC----CCCcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCc
Confidence 355667778999999655443 4789999999997 3468999999999999999999999999998866 679
Q ss_pred eeeeccceeEEEEEccCC-CHHHHHHHHHHhhhCCCCCHHHH--HH---------H--------------------HHHH
Q 012445 152 QASASREQMGYSFDALKT-YVPEMVELLIDCVRNPVFLDWEV--NE---------Q--------------------LTKV 199 (463)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~-~l~~~l~ll~~~~~~p~~~~~~~--~~---------~--------------------k~~~ 199 (463)
|++|+.|+|+|.+.+.++ ++..+|+++.|++.+|.|+++++ .+ + +..|
T Consensus 166 NA~T~~D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV 245 (1119)
T PTZ00432 166 NAYTFKDRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIV 245 (1119)
T ss_pred cccCCCCceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHH
Confidence 999999999999999885 79999999999999999988763 22 1 6779
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhh
Q 012445 200 KSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPL 278 (463)
Q Consensus 200 ~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~ 278 (463)
.+|++...++|...+.+.+.+.+|+|||+++..|++++|..++.+++++||+++|.|+|++++++| ++++++.++++++
T Consensus 246 ~~Emk~~~~~p~~~~~~~~~~~lf~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~ 325 (1119)
T PTZ00432 246 YSEMKKRFSDPLSFGYSVIYQNLFSNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNY 325 (1119)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHH
Confidence 999999999999999999988888889999999999999999999999999999999999999999 9999999999999
Q ss_pred hCCCCCCCCC--------CC-CCC--CCCCCceEEe--c-CCCCCceEEEEE-eecCCCC----------CCCcchHHHH
Q 012445 279 LSDLPSIHPR--------EE-PKS--VYTGGDYRCQ--A-DSGDQLTHFVLA-FELPGGW----------HKDKDAMTLT 333 (463)
Q Consensus 279 ~~~lp~~~~~--------~~-~~~--~~~~~~~~~~--~-~~~~~~~~v~l~-f~~~~~~----------~~~~~~~~~~ 333 (463)
|+.+|..... .. +.+ .+..+..++. . .....+.++.++ |..++.. .+.++..++.
T Consensus 326 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~~~~d~~~~~AL~ 405 (1119)
T PTZ00432 326 LTKHPKTGQLSHTAYREDADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDKSLIDPVDYLALL 405 (1119)
T ss_pred HhhcccccccccccccccccccccccccccCCeEEEeccCCCccccccEEEEEEEcCCccccccccccccCCHHHHHHHH
Confidence 9888755211 00 011 1111222221 1 111135666665 9874210 1236789999
Q ss_pred HHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEE-EEeecccCCcceEEEEEE-eCc-------ccHHHHHHHHH
Q 012445 334 VLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSF-SAFSNIYNHSGMFGIQGT-TGS-------DFVSKAIDLAA 404 (463)
Q Consensus 334 vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~-~a~~~~~~~~~~~~i~~~-~~~-------~~~~~~i~~~~ 404 (463)
||+.+|+|+++ |+|++.||+ .|++|++ .++.....+.+.|.|++. +++ ++++++.+.+.
T Consensus 406 VLs~lLggg~s-----------S~L~q~LrE-~GLa~svv~~~~~~~~~~~~f~I~l~g~~~~~~~~~~~~~~ev~~~I~ 473 (1119)
T PTZ00432 406 VLNYLLLGTPE-----------SVLYKALID-SGLGKKVVGSGLDDYFKQSIFSIGLKGIKETNEKRKDKVHYTFEKVVL 473 (1119)
T ss_pred HHHHHHcCCCc-----------cHHHHHHHh-cCCCcCCCcCcccCCCCceEEEEEEEcCChHhccchhhhHHHHHHHHH
Confidence 99999998754 999999996 6999996 444555667788988876 332 34779999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccC----hHHHHHHHHHHHHhcC
Q 012445 405 RELISVATPGEVDQVQLDRAKQSTKSAILMNLES----RMVVSEDIGRQVLTYG 454 (463)
Q Consensus 405 ~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s----~~~~~~~l~~~~l~~g 454 (463)
++|.+++++| +++++|+++|+++..++.....+ -...+..++..|+ +|
T Consensus 474 ~~L~~l~~eG-i~~eele~a~~qlef~~rE~~~~~~p~gl~~~~~~~~~~~-~g 525 (1119)
T PTZ00432 474 NALTKVVTEG-FNKSAVEASLNNIEFVMKELNLGTYPKGLMLIFLMQSRLQ-YG 525 (1119)
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHh-cC
Confidence 9999999999 99999999999998888764321 2445566666665 44
No 7
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=100.00 E-value=1.2e-31 Score=251.85 Aligned_cols=348 Identities=27% Similarity=0.422 Sum_probs=288.5
Q ss_pred ceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeeecc
Q 012445 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (463)
Q Consensus 78 ~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (463)
..+..+|.||++|...+.+.+...+.+.|++||++|+..+.|++|+++...++.|.+++...+.+..+..|++++.+++|
T Consensus 22 ~~~~~kl~ngL~Vas~e~~~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~tR 101 (429)
T KOG2583|consen 22 ISKTTKLVNGLTVASREAPTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTATR 101 (429)
T ss_pred hhhhhccccceEEEeccCCCcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeeec
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHH-HHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChH
Q 012445 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQL-TKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPES 236 (463)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k-~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (463)
|.+.|+++++.++++..|.+|.+.+.+|.|.+||+++.. .++..++.. .+|+..+.+.+|+++|.+.+|++++.+.-
T Consensus 102 e~~~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l~~--~t~~~~a~e~lH~aAfRngLgnslY~p~~ 179 (429)
T KOG2583|consen 102 ELIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADLAY--QTPYTIAIEQLHAAAFRNGLGNSLYSPGY 179 (429)
T ss_pred ceEEEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHhhh--cChHHHHHHHHHHHHHhcccCCcccCCcc
Confidence 999999999999999999999999999999999999998 777666654 68999999999999994489999999988
Q ss_pred hhccCCHHHHHHHHHhhccCCCeEEEEeCCCHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCceEEecCCCCCceEEEEE
Q 012445 237 AINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLA 316 (463)
Q Consensus 237 ~l~~i~~~~l~~f~~~~~~~~~~~l~i~G~~~~~l~~l~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 316 (463)
.+.+++.++|.+|.+++|...|++++.+|++|+.++.+++++ ..++........+..|.|++.+..... ...++.++
T Consensus 180 ~vg~vss~eL~~Fa~k~fv~gn~~lvg~nvd~~~L~~~~~~~-~~~~~~~~~k~a~a~~~gGe~Rk~~~g--~~~~v~va 256 (429)
T KOG2583|consen 180 QVGSVSSSELKDFAAKHFVKGNAVLVGVNVDHDDLKQFADEY-APIRDGLPLKPAPAKYSGGEARKDARG--NRVHVAVA 256 (429)
T ss_pred cccCccHHHHHHHHHHHhhccceEEEecCCChHHHHHHHHHh-ccccCCCCCCCCCccccCCccccccCC--ceeEEEEe
Confidence 999999999999999999999999999999999999999998 334433333333457788888766555 56777766
Q ss_pred eecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEEEEEeCcccH
Q 012445 317 FELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFV 396 (463)
Q Consensus 317 f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~~~~~~~~~ 396 (463)
-+.-.. .+.+...+..++.+.|+... |=|--.+.|-+-.-...+..-++.+++.+|.|.|+|++|+..+..++
T Consensus 257 gegAAa-~~~k~~~a~av~~~~Lg~~~------~~k~~t~~~~~aa~~a~~~~~s~sA~~a~ysDsGL~gv~~~~~~~~a 329 (429)
T KOG2583|consen 257 GEGAAA-GNLKVLAAQAVLLAALGNSA------PVKRGTGLLSEAAGAAGEQGASASAFNAPYSDSGLFGVYVSAQGSQA 329 (429)
T ss_pred cCcccc-cchHHHHHHHHHHHHHhccc------ccccccchHHHHHhhccccCceeeeecccccCCceEEEEEEecCccH
Confidence 554432 35788889999999998642 10000122322222222234478889999999999999999999889
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccC
Q 012445 397 SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLES 438 (463)
Q Consensus 397 ~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s 438 (463)
.+++......++..+..+ ++....+.+++.++....+..+.
T Consensus 330 ~~~v~s~v~~lks~~~~~-id~~~~~a~~~~l~~~~~ss~~a 370 (429)
T KOG2583|consen 330 GKVVSSEVKKLKSALVSD-IDNAKVKAAIKALKASYLSSVEA 370 (429)
T ss_pred HHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhhcchHH
Confidence 999999999998887766 87777777777777766665544
No 8
>PRK15101 protease3; Provisional
Probab=100.00 E-value=8.1e-31 Score=292.69 Aligned_cols=374 Identities=9% Similarity=0.048 Sum_probs=290.8
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCceEEEEcCCCcEEEEe-cC---CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhh
Q 012445 53 SSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASE-TS---VSPVASISLYVGCGSIYESPISFGTTHLLERMA 128 (463)
Q Consensus 53 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~L~NG~~v~~~-~~---~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~ 128 (463)
.+|+.|..+|......+... ....++.+.++||++||.. ++ ..|++.+.+.+.+|...+++...|++.++..|+
T Consensus 499 ~lP~~n~fip~~~~~~~~~~--~~~~p~~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll 576 (961)
T PRK15101 499 SLPELNPYIPDDFSLIKADK--AYKHPELIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFALNDYLA 576 (961)
T ss_pred CCCCCCCccCCCCeeccCCC--CCCCCeEEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 35666766666542222111 2234688999999999964 44 358999999999999999999999999999997
Q ss_pred cCCCCCCCHHHHHHHHHHcCCeeeeeeccceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcC
Q 012445 129 FRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSN 208 (463)
Q Consensus 129 ~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~ 208 (463)
+.+..++....+..|..++.. +.+++.+++++++++++.+|+++.+.+.+|.|++++|+++|+.+.+++++...
T Consensus 577 -----~~~l~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~ 650 (961)
T PRK15101 577 -----GLALDQLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDSAEK 650 (961)
T ss_pred -----HHHHHHHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 445667777788889999999 79999999999999999999999999999999999999999999999996543
Q ss_pred -ChHHHHHHHHHHHhc-CCCCCCCCCCChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCC
Q 012445 209 -NPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSI 285 (463)
Q Consensus 209 -~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~ 285 (463)
.|..++...+ ..+ .||++.+ .++.+.|+++|.+++++|++++|.+.+++++|+| ++.+++.++++++++.++..
T Consensus 651 ~~~~~~~~~~~--~~~~~~py~~~-~~~~~~l~~it~edl~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~ 727 (961)
T PRK15101 651 GKAYEQAIMPA--QMLSQVPYFER-DERRKLLPSITLKDVLAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGAD 727 (961)
T ss_pred cCcHHHHHHHH--HHHhcCCCCCH-HHHHHHHhcCCHHHHHHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccC
Confidence 4444333322 235 8898864 5688999999999999999999999999999999 99999999999998888653
Q ss_pred CCCC-CC--CCCCCCCceEEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHH
Q 012445 286 HPRE-EP--KSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRV 362 (463)
Q Consensus 286 ~~~~-~~--~~~~~~~~~~~~~~~~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~l 362 (463)
+... .. .....+....+.......++.+.+.|..++ . +.....++..+|+++ |+++||++|
T Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~---~~~~~~v~~~lLg~~-----------~ssrlf~~L 791 (961)
T PRK15101 728 GTEWWRGKDVVVDKKQSVNFEKAGSSTDSALAAVYVPTG--Y---DEYQSSAYSSLLGQI-----------IQPWFYNQL 791 (961)
T ss_pred CcccccccceEeCCCCeEEEecCCCCCCCeEEEEEEeCC--C---CCHHHHHHHHHHHHH-----------HhHHHHHHH
Confidence 2211 11 111122223333222224566666665554 2 236677888888765 569999999
Q ss_pred HhhCCCeEEEEEeecccCCcceEEEEEEeC---cccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccCh
Q 012445 363 LNEFPQVQSFSAFSNIYNHSGMFGIQGTTG---SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR 439 (463)
Q Consensus 363 R~~~~~~Y~~~a~~~~~~~~~~~~i~~~~~---~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~ 439 (463)
|+++|++|+|+++.....+.+.+.++++++ |+.+.+.++.+.+++.+... | +|++||+++|+.++.++....++.
T Consensus 792 Rtk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~~~l~~~i~~f~~~~~~~l~-~-lt~eE~~~~k~~l~~~~~~~~~sl 869 (961)
T PRK15101 792 RTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPAYLWQRYQAFFPQAEAKLR-A-MKPEEFAQYQQALINQLLQAPQTL 869 (961)
T ss_pred HHHhhhceEEEEEeeccCCeeeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHHhcCCCCCH
Confidence 999999999999988777777777777654 56678888888887655444 6 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCc
Q 012445 440 MVVSEDIGRQVLTYGE 455 (463)
Q Consensus 440 ~~~~~~l~~~~l~~g~ 455 (463)
...+..++.++..++.
T Consensus 870 ~~~a~~~~~~i~~~~~ 885 (961)
T PRK15101 870 GEEASRLSKDFDRGNM 885 (961)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999875444
No 9
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-30 Score=266.40 Aligned_cols=344 Identities=19% Similarity=0.224 Sum_probs=283.2
Q ss_pred CCCceEEEEcCCCcEEEE-ecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCC-HHHHHHHHHHcCCeee
Q 012445 75 EPGKTKISTLPNGVKIAS-ETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGNVQ 152 (463)
Q Consensus 75 ~~~~~~~~~L~NG~~v~~-~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s-~~~l~~~l~~~g~~~~ 152 (463)
+..+++..+|+||+++.+ .+...+++...+.|+.|+..+|.+.+|+||++|||+|.|+++++ ...+..+|..+||..|
T Consensus 20 d~r~y~~I~LpNGl~~LlisDP~a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~N 99 (937)
T COG1025 20 DDRKYRAIKLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHN 99 (937)
T ss_pred cCcceeEEECCCCceEEEecCCCCCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCccc
Confidence 447899999999999995 55556799999999999999999999999999999999999975 5679999999999999
Q ss_pred eeeccceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCC
Q 012445 153 ASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 231 (463)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~ 231 (463)
|+|..+.|+|.+++.++.++.+|+.++++|.+|.|+++..++++..|.+|......+...++.......+- +||+.+..
T Consensus 100 A~T~~~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R~~~~~~~~~np~HP~srFs 179 (937)
T COG1025 100 ASTAGERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQVQALTANPGHPLSKFS 179 (937)
T ss_pred cccCCCceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHHHHHHHHhhcCCCCCccccC
Confidence 99999999999999999999999999999999999999999999999999998888878788877777777 99999999
Q ss_pred CCChHhhcc----CCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCCC--CCC----CCCce
Q 012445 232 LAPESAINR----LNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVY----TGGDY 300 (463)
Q Consensus 232 ~~~~~~l~~----i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~~~--~~~----~~~~~ 300 (463)
.|..++|.. ...++|.+||+++|.+++|+++|.| -+.+++.+++.++|+++|......++. +++ .+...
T Consensus 180 ~GN~~TL~~~p~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~~p~~p~p~~~d~~t~~ii 259 (937)
T COG1025 180 TGNLETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIPPIPVPVVTDEQTGKII 259 (937)
T ss_pred CCChhhhccCCCchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCChHHhCceE
Confidence 999999987 5579999999999999999999999 999999999999999999765433322 222 22223
Q ss_pred EEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccC
Q 012445 301 RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYN 380 (463)
Q Consensus 301 ~~~~~~~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~ 380 (463)
++.... +...+.+.|++++. ...-..-....+..++|..+ +| +.+ ....+.||+-++.++...+.
T Consensus 260 ~i~p~~--~~~~L~i~f~i~~~-~~~~~~~~~~~~s~Lig~es--------~g--sL~--~~Lk~~Glit~l~a~~~~~~ 324 (937)
T COG1025 260 HIVPAK--PRPRLRIYFPIDDN-SAKFRSKPDEYLSHLIGNES--------PG--SLL--AWLKKQGLITELSAGLDPIS 324 (937)
T ss_pred EeccCC--CCceEEEEEEcCCc-ccccccCCHHHHHHHhccCC--------Cc--hHH--HHHHhccchhhhcccccccc
Confidence 333223 67889999999973 22223456788888998643 33 444 34556799999999887655
Q ss_pred -CcceEEEEEEeC---cccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Q 012445 381 -HSGMFGIQGTTG---SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM 434 (463)
Q Consensus 381 -~~~~~~i~~~~~---~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~ 434 (463)
|.+.|.|.+.-. -++.+++|..+++-++-+...| +....|+...+-.-.....
T Consensus 325 ~n~~~f~is~~LT~~Gl~~~~~VI~~~F~yl~~l~~~~-~~~~~f~Elq~v~~l~f~y 381 (937)
T COG1025 325 GNYGVFAISYELTDKGLAHYDRVIALTFQYLNLLREKG-IPKYTFDELQNVLDLDFRY 381 (937)
T ss_pred CCcceEEEEeehhhcchhhHHHHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHhhhcc
Confidence 778888875542 4789999999999999999888 8888887655544333333
No 10
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-28 Score=259.30 Aligned_cols=360 Identities=16% Similarity=0.176 Sum_probs=284.5
Q ss_pred CCCceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCC-HHHHHHHHHHcCCeee
Q 012445 75 EPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGNVQ 152 (463)
Q Consensus 75 ~~~~~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s-~~~l~~~l~~~g~~~~ 152 (463)
+...++..+|+||+++.+...| .+..+..+.|+.||..||.+.+|+||++|||+|.|+++++ ..+....+..+||.-|
T Consensus 24 d~r~yr~~~L~Ngl~alLisDp~tD~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssN 103 (974)
T KOG0959|consen 24 DTREYRGIELTNGLRALLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSN 103 (974)
T ss_pred CccceeEEEecCCceEEEecCCCCCccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccc
Confidence 4468999999999999954335 4588889999999999999999999999999999999976 5667888899999999
Q ss_pred eeeccceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCC
Q 012445 153 ASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 231 (463)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~ 231 (463)
|+|..++|+|++.+..++++.+|+.+++++..|.|++++.++++..|..|..+...+...+..+.....+- +||+++..
T Consensus 104 A~T~~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~~ql~~~l~~~~hp~~kF~ 183 (974)
T KOG0959|consen 104 AYTDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRFDQLLRSLSNPGHPYSKFS 183 (974)
T ss_pred cccccccceEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHHHHHHHHhcCCCCcchhcc
Confidence 99999999999999999999999999999999999999999999999999999888888888888888888 99999999
Q ss_pred CCChHhhccCC-----HHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCCC--CCC----CCCc
Q 012445 232 LAPESAINRLN-----STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVY----TGGD 299 (463)
Q Consensus 232 ~~~~~~l~~i~-----~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~~~--~~~----~~~~ 299 (463)
.|..++|.... .+.|.+||++||.+++|+++|+| .+.+++..++...|+.+++...+.+.. +++ .++.
T Consensus 184 tGN~~tL~~~p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~~~p~f~~~p~~~e~~~~~ 263 (974)
T KOG0959|consen 184 TGNKKTLLEGPREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPEPPFLPEELKKL 263 (974)
T ss_pred ccchhhhhhccccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCCCCCcccCCCCChHHhCcE
Confidence 99999999988 89999999999999999999999 999999999999999998776544321 222 2333
Q ss_pred eEEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeec-c
Q 012445 300 YRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSN-I 378 (463)
Q Consensus 300 ~~~~~~~~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~-~ 378 (463)
+.++... +...+.+.|+.|+. ...-+......+..++|.-| .| | |...|+. .||+-+..++.. .
T Consensus 264 ~~v~pik--~~~~l~is~~~p~~-~~~y~~kP~~y~~hLigheg--------~G--S-L~~~Lk~-~gw~~sl~a~~~~~ 328 (974)
T KOG0959|consen 264 VRVVPIK--DGRSLMISWPVPPL-NHHYKSKPLRYLSHLIGHEG--------PG--S-LLSYLKR-LGWATSLEAGIPEF 328 (974)
T ss_pred EEEEecc--ccceEEEEEecCCc-ccccccCcHHHHHHHhccCC--------cc--h-HHHHHHH-hhchheeecCCCcc
Confidence 3333333 56788899999974 34445566788888888653 33 4 4456665 599999988876 3
Q ss_pred cCCcceEEEEEEeC---cccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-hccChHHHHHHHHHHH
Q 012445 379 YNHSGMFGIQGTTG---SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM-NLESRMVVSEDIGRQV 450 (463)
Q Consensus 379 ~~~~~~~~i~~~~~---~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~-~~~s~~~~~~~l~~~~ 450 (463)
..+.+.|.+.+.-. -+++++++..+.+-+..+.+-| ....-++.....-...... .-+.+...+..++.++
T Consensus 329 as~~~~f~v~idLtd~G~e~~~~ii~~~f~yi~~l~~~~-~~~~i~~E~~~~~~~~Frf~~k~~p~~~~~~~~~nl 403 (974)
T KOG0959|consen 329 ASGYSFFNVSIDLTDEGLEHVDEIIGLVFNYIKLLQSAG-PEKWIFKELQLISEVKFRFQDKEPPMEYASEIASNL 403 (974)
T ss_pred ccccceEEEEEEeccccchhHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHhhhhheeecccCCcHHHHHHHHhhc
Confidence 33556666655543 4788999999999999887766 4433344332221122222 2235566666666544
No 11
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.89 E-value=1.5e-22 Score=175.77 Aligned_cols=146 Identities=37% Similarity=0.565 Sum_probs=138.5
Q ss_pred EEEEe-cCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeeeccceeEEEEEcc
Q 012445 89 KIASE-TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDAL 167 (463)
Q Consensus 89 ~v~~~-~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 167 (463)
||++. ++..+.+.+++++++|+++|++...|++|+++||+++|+.+++..++.+.++..|+.++++++++++.|+++++
T Consensus 1 ~V~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~ 80 (149)
T PF00675_consen 1 KVVLVEDPGSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSASVL 80 (149)
T ss_dssp EEEEEESTTSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEEEe
Confidence 67754 44688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 012445 168 KTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAP 234 (463)
Q Consensus 168 ~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~ 234 (463)
+++++.+|+++.+++.+|.|++++|+++|+.+..++++...+|...+.+.+++.+| ++||++++.|+
T Consensus 81 ~~~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p~~~~~~~~ 148 (149)
T PF00675_consen 81 SEDLEKALELLADMLFNPSFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGHPYGNPLLGP 148 (149)
T ss_dssp GGGHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSGGGSHSS-T
T ss_pred cccchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999 99999998876
No 12
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.89 E-value=3.6e-21 Score=201.43 Aligned_cols=343 Identities=13% Similarity=0.142 Sum_probs=266.5
Q ss_pred ceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCC-e-eeeee
Q 012445 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGG-N-VQASA 155 (463)
Q Consensus 78 ~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~-~-~~~~~ 155 (463)
.+....-+.|++++...++.+.....+.|+. ++....|++|.|||+.+.|+.+++-.+.--.+..... + +||.|
T Consensus 21 ~~~~~H~~TGa~l~hi~~~d~~~vFsi~F~T----~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T 96 (978)
T COG1026 21 GYILEHEKTGAELAHIKNEDPNNVFSIAFKT----EPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFT 96 (978)
T ss_pred eEEEeeccCCceEEEecCCCcCceEEEEeec----CCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhcc
Confidence 3344444589999977666776666777754 4456889999999999999999987775444444333 3 89999
Q ss_pred ccceeEEEEEcc-CCCHHHHHHHHHHhhhCCCCCHHHHHHH--------------HHHHHHHHHhhcCChHHHHHHHHHH
Q 012445 156 SREQMGYSFDAL-KTYVPEMVELLIDCVRNPVFLDWEVNEQ--------------LTKVKSEISEVSNNPQSLLLEAIHS 220 (463)
Q Consensus 156 ~~~~~~~~~~~~-~~~l~~~l~ll~~~~~~p~~~~~~~~~~--------------k~~~~~e~~~~~~~p~~~~~~~l~~ 220 (463)
..|.|+|-+++. .+|+-.++.+..|.+.+|.+.+|.|.++ +..|..|++....++..++++.+.+
T Consensus 97 ~~D~T~YP~sS~~~~Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss~~~~~~~~~~~ 176 (978)
T COG1026 97 FPDKTVYPASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSSGESVLSRAMQQ 176 (978)
T ss_pred CCCcceeeccccCcchHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccCchhHHHHHHHH
Confidence 999999999776 4689999999999999999999998876 3455678888889999999999999
Q ss_pred Hhc-CCCCCCCCCCChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhh-hCCCCCCCCCCC-CC-CCC
Q 012445 221 AGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPL-LSDLPSIHPREE-PK-SVY 295 (463)
Q Consensus 221 ~~~-~~~~~~~~~~~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~-~~~lp~~~~~~~-~~-~~~ 295 (463)
.+| +..|+....|.+..|..++.|++++||+++|+|+|+.++++| ++.++.+..++.. +..++......+ +. ..+
T Consensus 177 slfp~~ty~~~SGG~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~~~~~i~~~~~~ 256 (978)
T COG1026 177 SLFPGTTYGVNSGGDPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRELDVPIPDQKAF 256 (978)
T ss_pred hhCCCccccccCCCCcccccccCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccccCCCCCccccc
Confidence 999 888998889999999999999999999999999999999999 9999999999887 665554432111 11 111
Q ss_pred ---CCCceEEe---cCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCe
Q 012445 296 ---TGGDYRCQ---ADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQV 369 (463)
Q Consensus 296 ---~~~~~~~~---~~~~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~ 369 (463)
........ ...+..+..+.+.|.++.. .+..+..++.||..+|-++.+ ++|++.|.+. |++
T Consensus 257 ~~~~~~~~~ypi~~~~~de~q~~~~lsWl~~~~-~d~~~~lal~vL~~iLl~~~a-----------sPl~~~lies-glg 323 (978)
T COG1026 257 KKPRRKVLEYPISFDEEDEDQGLLSLSWLGGSA-SDAEDSLALEVLEEILLDSAA-----------SPLTQALIES-GLG 323 (978)
T ss_pred CcccccceeeccCCCCCCCceeEEEEEEecCCc-ccHHHHHHHHHHHHHHccCcc-----------cHHHHHHHHc-CCC
Confidence 11111111 1234468899999999974 466788999999999988766 9999999986 555
Q ss_pred -EEEEEeecccCCcceEEEEEE-eCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccC
Q 012445 370 -QSFSAFSNIYNHSGMFGIQGT-TGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLES 438 (463)
Q Consensus 370 -Y~~~a~~~~~~~~~~~~i~~~-~~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s 438 (463)
+.+...+...-....|.+.++ ++.++.++.-+.+++.|+++.++| ++.+.++.++.++.-++......
T Consensus 324 ~~~~~g~~~~~~~~~~f~v~~~gv~~ek~~~~k~lV~~~L~~l~~~g-i~~~~ie~~~~q~E~s~ke~~s~ 393 (978)
T COG1026 324 FADVSGSYDSDLKETIFSVGLKGVSEEKIAKLKNLVLSTLKELVKNG-IDKKLIEAILHQLEFSLKEVKSY 393 (978)
T ss_pred cccccceeccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhhhhhcCC
Confidence 444433443334456665555 456788889999999999999999 99999999999988887775333
No 13
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.89 E-value=7.3e-22 Score=176.76 Aligned_cols=175 Identities=25% Similarity=0.363 Sum_probs=145.2
Q ss_pred cCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCC---CCC-CCC--C--CCCCCceEEecCCCCCc
Q 012445 240 RLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH---PRE-EPK--S--VYTGGDYRCQADSGDQL 310 (463)
Q Consensus 240 ~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~---~~~-~~~--~--~~~~~~~~~~~~~~~~~ 310 (463)
+||.++|++||++||.|+||+++++| ++++++.++++++|+.||... ... ... + ...+.......... ++
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 79 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSKDE-SQ 79 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEESSS-SS
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhccccccccccccccccccccccccccccccccc-cc
Confidence 47899999999999999999999999 999999999999999998653 111 111 1 11222223322222 68
Q ss_pred eEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEEEEE
Q 012445 311 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 390 (463)
Q Consensus 311 ~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~~~ 390 (463)
..+.++|++++. .+.++..++.++..+|+++ ++++|+..||++.+++|++.++...+.+.+.|.+++.
T Consensus 80 ~~v~~~~~~~~~-~~~~~~~~~~~l~~~l~~~-----------~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~ 147 (184)
T PF05193_consen 80 SIVSIAFPGPPI-KDSKDYFALNLLSSLLGNG-----------MSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQ 147 (184)
T ss_dssp EEEEEEEEEEET-GTSTTHHHHHHHHHHHHCS-----------TTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEE
T ss_pred cccccccccccc-cccchhhHHHHHHHHHhcC-----------ccchhHHHHHhccccceEEEeeeeccccceEEEEEEE
Confidence 999999999972 2889999999999999976 5699999999999999999999877778999999999
Q ss_pred eCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 012445 391 TGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQST 428 (463)
Q Consensus 391 ~~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~ 428 (463)
+.+++..++++.+.++++.+.+.| ++++||+++|+++
T Consensus 148 ~~~~~~~~~~~~~~~~l~~l~~~~-~s~~el~~~k~~L 184 (184)
T PF05193_consen 148 VTPENLDEAIEAILQELKRLREGG-ISEEELERAKNQL 184 (184)
T ss_dssp EEGGGHHHHHHHHHHHHHHHHHHC-S-HHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHhcC
Confidence 999999999999999999999988 9999999999875
No 14
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.7e-19 Score=185.80 Aligned_cols=343 Identities=11% Similarity=0.122 Sum_probs=271.8
Q ss_pred EEcCCCcEEEE-ecCC--C-CeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeeecc
Q 012445 82 STLPNGVKIAS-ETSV--S-PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (463)
Q Consensus 82 ~~L~NG~~v~~-~~~~--~-~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (463)
..-..|.++|. ++.. . |++.+.+.++...+..++....+..|+..+++. ...++.......|..++...+.
T Consensus 505 l~~~~~~~~wy~~~d~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~la~d-----al~~~~y~A~~aG~sfs~~~~~ 579 (937)
T COG1025 505 LSEDPNLRLWYLKEDYFAVEPKASVSLAIRSPHASRSPRNQVLTELYAYLAND-----ALDKLSYQASLAGLSFSLAANS 579 (937)
T ss_pred hhcCCCceEEEecCCccccCCcceeEEEEeCcccccCHHHHHHHHHHHHHHHH-----HHHhhhhHHHhcceEEEeecCC
Confidence 33334677774 4433 4 899999999999999988888888888888844 3445555677889999999999
Q ss_pred ceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHH-hhcCChHHHHHHHHHHHhcCCCCCCCCCCChH
Q 012445 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEIS-EVSNNPQSLLLEAIHSAGYSGALANPLLAPES 236 (463)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~-~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (463)
++..++++++++.+++++..+.+.+..-.++++.|+..|+.+.++++ ....+|..+..+.+....- +..++.....+
T Consensus 580 ~Gl~ltisGft~~lp~L~~~~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l~~--~~~~s~~e~~~ 657 (937)
T COG1025 580 NGLDLTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQ--VPYWSREERRN 657 (937)
T ss_pred CceEEEeeccccchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhhhC--CCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999 4568899999988888765 22233333558
Q ss_pred hhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCC---CCCCCCCCCceEEecC-CCCCce
Q 012445 237 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPRE---EPKSVYTGGDYRCQAD-SGDQLT 311 (463)
Q Consensus 237 ~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~ 311 (463)
.++.++.+++..|....++.....+.++| +..+++.++++.....++...... +......++......- ...+..
T Consensus 658 ~l~~v~~~e~~~f~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~e~~~~~~~~a 737 (937)
T COG1025 658 ALESVSVEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAIGSTWYRNPSVYLLKGGTRIFETVGGESDSA 737 (937)
T ss_pred HhhhccHHHHHHHHHHhhhccceeeeeeccchHHHHHHHHHHHHhhhcccCCcccCCCceeccCCCeeEeeeccCCcccc
Confidence 88999999999999999999999999999 999999999998777776554422 1112233444333322 211333
Q ss_pred EEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEEEEEe
Q 012445 312 HFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTT 391 (463)
Q Consensus 312 ~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~~~~ 391 (463)
..++.+...- .+.++.+...++.+++. ..+|.+||++.+++|.|.+++....++..+.|++++
T Consensus 738 n~~i~~~~~~--~~~~~~a~s~Ll~~l~~---------------~~ff~~LRTkeQLGY~Vfs~~~~v~~~~gi~f~vqS 800 (937)
T COG1025 738 NAAILYPQQY--DEIKSSALSSLLGQLIH---------------PWFFDQLRTKEQLGYAVFSGPREVGRTPGIGFLVQS 800 (937)
T ss_pred cceeEecccc--chHHHHHHHHHHHHHHh---------------HHhHHHhhhhhhcceEEEecceeecCccceEEEEeC
Confidence 3344444332 23556666678888887 899999999999999999999988888888889998
Q ss_pred C---cccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Q 012445 392 G---SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQV 450 (463)
Q Consensus 392 ~---~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~ 450 (463)
+ |+.+.+.++.+.+.+..... ++++++|+..|+.++++++....+....+..++..+
T Consensus 801 ~~~~p~~L~~r~~~F~~~~~~~l~--~ms~e~Fe~~k~alin~il~~~~nl~e~a~r~~~~~ 860 (937)
T COG1025 801 NSKSPSYLLERINAFLETAEPELR--EMSEEDFEQIKKALINQILQPPQNLAEEASRLWKAF 860 (937)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHh
Confidence 6 56788889999999988877 499999999999999999999999999999888433
No 15
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=5.8e-16 Score=164.81 Aligned_cols=346 Identities=12% Similarity=0.111 Sum_probs=272.5
Q ss_pred EEEEcCCCcEEEE-ecCC--CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeeec
Q 012445 80 KISTLPNGVKIAS-ETSV--SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (463)
Q Consensus 80 ~~~~L~NG~~v~~-~~~~--~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (463)
+.+.-....++|. +++. -|++.+.+.+.+.-+...+...+++.++..++.. ...+..+.....|..++.+.+
T Consensus 511 ~Li~~~~~~~lw~k~dd~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~l~d-----~l~E~~Y~A~~aGl~~~~~~s 585 (974)
T KOG0959|consen 511 VLISDTPFSELWYKQDDKFNVPKAYTKFDFICPGATQSPLNSVLSTLYVRLLKD-----QLNEYLYPALLAGLTYSLSSS 585 (974)
T ss_pred eeeecCCcceeEEecccccccchhheeeeecCcccccCHHHHHHHHHHHHHHHH-----HHhHHHHHHHhccceEEeeec
Confidence 4444445789995 4444 4799999999999999999999999999999843 334556677888999999999
Q ss_pred cceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHHHhcCCCCCCCCCCCh
Q 012445 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISE-VSNNPQSLLLEAIHSAGYSGALANPLLAPE 235 (463)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~-~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (463)
..+..+++.+.+++++.+++.+.+++.+-..+++.|+..++.+..++++ ...+|..+..+.+...+-...|... ...
T Consensus 586 ~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~lll~~~~W~~~--e~~ 663 (974)
T KOG0959|consen 586 SKGVELRVSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLLLLEESIWSKE--ELL 663 (974)
T ss_pred CCceEEEEeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhccccchH--HHH
Confidence 9999999999999999999999999999899999999999999999997 6778888777776665544444333 356
Q ss_pred HhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCC-CC-----------CCCCCCCceEE
Q 012445 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPRE-EP-----------KSVYTGGDYRC 302 (463)
Q Consensus 236 ~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~-~~-----------~~~~~~~~~~~ 302 (463)
+.++.++.+++..|...++.+--+.++|.| ++.++..++++.....+ +...+. .+ .....|..+.+
T Consensus 664 ~al~~~~le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l-~~~~~~~~p~~~~~~~~~~~~~lp~G~~~~~ 742 (974)
T KOG0959|consen 664 EALDDVTLEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDIL-KSAAPNSRPLFRSEHLPRREIQLPNGDYYFY 742 (974)
T ss_pred HHhhcccHHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhh-hccCCCCccccccccCcccceeccCCceEEE
Confidence 888999999999999999999999999999 99999999866665555 222111 11 01223444433
Q ss_pred ecC--CCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccC
Q 012445 303 QAD--SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYN 380 (463)
Q Consensus 303 ~~~--~~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~ 380 (463)
... ...+.+.+...+.+.. .+..+...+.++.+++. .++|+.||++.+++|.+++......
T Consensus 743 ~~~~n~~~~ns~i~~~~Q~~~--~~~~~~~~~~L~~~li~---------------ep~Fd~LRTkeqLGYiv~~~~r~~~ 805 (974)
T KOG0959|consen 743 RHLLNKTDDNSCIEVYYQIGV--QDTRDNAVLGLLEQLIK---------------EPAFDQLRTKEQLGYIVSTGVRLNY 805 (974)
T ss_pred EcccccCCCCceEEEEEEccc--chhHHHHHHHHHHHHhc---------------cchHHhhhhHHhhCeEeeeeeeeec
Confidence 322 2335677778888643 57788889999999998 8899999999999999998877666
Q ss_pred CcceEEEEEEe--CcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHh
Q 012445 381 HSGMFGIQGTT--GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLT 452 (463)
Q Consensus 381 ~~~~~~i~~~~--~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~ 452 (463)
+...+.|.+++ .++.+++.|+.+++.+.+... ++++++++.-+..++...+....+......+++..+..
T Consensus 806 G~~~~~i~Vqs~~~~~~le~rIe~fl~~~~~~i~--~m~~e~Fe~~~~~lI~~~~ek~~~l~~e~~~~w~ei~~ 877 (974)
T KOG0959|consen 806 GTVGLQITVQSEKSVDYLEERIESFLETFLEEIV--EMSDEEFEKHKSGLIASKLEKPKNLSEESSRYWDEIII 877 (974)
T ss_pred CcceeEEEEccCCCchHHHHHHHHHHHHHHHHHH--hcchhhhhhhHHHHHHHHhhcCcchhHHHHHHHHHHHh
Confidence 56566666664 467899999999999998887 59999999999999999999888777777666666654
No 16
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.9e-16 Score=158.21 Aligned_cols=336 Identities=14% Similarity=0.126 Sum_probs=254.4
Q ss_pred CCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHH-HHHHHHHc-CCeeeeeeccceeEE
Q 012445 85 PNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR-IVREVEAI-GGNVQASASREQMGY 162 (463)
Q Consensus 85 ~NG~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~-l~~~l~~~-g~~~~~~~~~~~~~~ 162 (463)
.-|.++.+-+...+--.+++.++.. ++...|+.|+|||-...|+.+++-.+ +.+.|..- .--+|+++..+++.|
T Consensus 60 ~Tgae~lhl~reD~N~vFsI~FrTp----p~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~pD~T~y 135 (998)
T KOG2019|consen 60 KTGAEVLHLDREDENNVFSIVFRTP----PKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTAPDYTFY 135 (998)
T ss_pred CCCceeEeeccCCCCceeEEEeecC----CCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccCCCccee
Confidence 4688988666655544455556544 45678999999999999999876443 33333332 224789999999999
Q ss_pred EEEcc-CCCHHHHHHHHHHhhhCCCCCHHHHHHH------------------HHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 012445 163 SFDAL-KTYVPEMVELLIDCVRNPVFLDWEVNEQ------------------LTKVKSEISEVSNNPQSLLLEAIHSAGY 223 (463)
Q Consensus 163 ~~~~~-~~~l~~~l~ll~~~~~~p~~~~~~~~~~------------------k~~~~~e~~~~~~~p~~~~~~~l~~~~~ 223 (463)
-+.+. ++|+..+.++..|....|.+-..+|.++ |..+-+|++..-.+|...+...+.+.+|
T Consensus 136 PfattN~kDf~NL~dVYLDAtffPklr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if~~~~Qq~L~ 215 (998)
T KOG2019|consen 136 PFATTNTKDFYNLRDVYLDATFFPKLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIFGMLFQQALF 215 (998)
T ss_pred ecccCChHHHHHHHHHhhhcccchHHHhhhhhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHHHHHHHHhhC
Confidence 98665 5699999999999999999887777764 4567788888888999999999999999
Q ss_pred -CCCCCCCCCCChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCC-CC-CCCCC-
Q 012445 224 -SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP-KS-VYTGG- 298 (463)
Q Consensus 224 -~~~~~~~~~~~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~~-~~-~~~~~- 298 (463)
.+.||....|.+..|..++.+++.+||+++|.|+|..+..+| +..++.+++++.-|....+.....+. .. .+...
T Consensus 216 p~~tYgv~SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~kv~~qk~f~kp~ 295 (998)
T KOG2019|consen 216 PENTYGVNSGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSKVTFQKLFDKPR 295 (998)
T ss_pred ccccccccCCCCcccCccccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCccccccccccCc
Confidence 999999989999999999999999999999999999999999 99999999998877766443322211 11 22111
Q ss_pred ceEE--ecC---CCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCe--EE
Q 012445 299 DYRC--QAD---SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQV--QS 371 (463)
Q Consensus 299 ~~~~--~~~---~~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~--Y~ 371 (463)
++.. ..+ ....++...+.|..+.. .+..+..++.+|..+|-+|.+ |++|+.|.|. |+. .+
T Consensus 296 rvve~~p~d~~~~p~Kq~~~s~s~L~~~p-~d~~etfaL~~L~~Ll~~gps-----------Sp~yk~LiES-GLGtEfs 362 (998)
T KOG2019|consen 296 RVVEKGPADPGDLPKKQTKCSNSFLSNDP-LDTYETFALKVLSHLLLDGPS-----------SPFYKALIES-GLGTEFS 362 (998)
T ss_pred eeeeecCCCCCCCccceeEEEEEeecCCc-hhHHHHHHHHHHHHHhcCCCc-----------cHHHHHHHHc-CCCcccc
Confidence 1111 111 12256777788887764 466788999999999988755 9999999886 544 56
Q ss_pred EEEeecccCCcceEEEEEEeC-cccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccC
Q 012445 372 FSAFSNIYNHSGMFGIQGTTG-SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLES 438 (463)
Q Consensus 372 ~~a~~~~~~~~~~~~i~~~~~-~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s 438 (463)
+.+.+..+.-.+.|++-.+.- .++++++-+.+...+++++..| ++.+.++...+++.-++..+-..
T Consensus 363 vnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae~g-fd~drieAil~qiEislk~qst~ 429 (998)
T KOG2019|consen 363 VNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAETG-FDNDRIEAILHQIEISLKHQSTG 429 (998)
T ss_pred cCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHhhhhhhccccc
Confidence 666666666678888877654 4668888889999999999988 99999888777766665554333
No 17
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.8e-16 Score=154.54 Aligned_cols=334 Identities=14% Similarity=0.154 Sum_probs=241.6
Q ss_pred CcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHc-CCeeeeeeccceeEEEEE
Q 012445 87 GVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAI-GGNVQASASREQMGYSFD 165 (463)
Q Consensus 87 G~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~ 165 (463)
|++|++..++++.+.=.+.+.. |-..+.|+.|-|||+.|+|+++++...+.+.+... -++.|++++.+++.|+++
T Consensus 29 kl~va~~~~pts~vhG~f~v~T----Ea~~d~G~PHTLEHL~FMGSKkYP~kGvLd~~anr~l~dtNAwTDtD~T~YtLS 104 (1022)
T KOG0961|consen 29 KLRVAIGEVPTSMVHGAFSVVT----EADSDDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYTLS 104 (1022)
T ss_pred ceEEEEeecCCcceeeeEEeee----eecCCCCCchhHHHHhhhccccCCcccHHHHhhcchhcccccccccCcceEEee
Confidence 8999987777664443333322 33457899999999999999999998887777665 468999999999999998
Q ss_pred cc-CCCHHHHHHHHHHhhhCCCCCHHHHHHHH----------HHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCCCCCC
Q 012445 166 AL-KTYVPEMVELLIDCVRNPVFLDWEVNEQL----------TKVKSEISEVSNNPQSLLLEAIHSAGY--SGALANPLL 232 (463)
Q Consensus 166 ~~-~~~l~~~l~ll~~~~~~p~~~~~~~~~~k----------~~~~~e~~~~~~~p~~~~~~~l~~~~~--~~~~~~~~~ 232 (463)
+. .+.+-.+|.+..|.+..|.+++++|-.+. ..+..|++..+..-.....+......| ..+|.....
T Consensus 105 tag~dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~eTG 184 (1022)
T KOG0961|consen 105 TAGSDGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVETG 184 (1022)
T ss_pred cccccchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcccchhhhhhhheeecCCCCCceeccC
Confidence 76 45799999999999999999999998764 556677777666666677777888888 667877888
Q ss_pred CChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCC-----CCC----CCCC---CCc
Q 012445 233 APESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPRE-----EPK----SVYT---GGD 299 (463)
Q Consensus 233 ~~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~-----~~~----~~~~---~~~ 299 (463)
|..+.|+.++.+++++||+++|.++||++.|+| +++++++...+..-..++...... +|. ..+. .-.
T Consensus 185 G~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~~~~rPf~~tn~~~~i~e~t~ 264 (1022)
T KOG0961|consen 185 GRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPDHFPRPFSFTNALSDIKESTV 264 (1022)
T ss_pred CChhhHHHhhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCCCCCCCcccccCcccCCccce
Confidence 899999999999999999999999999999999 999999999887765554332211 111 1111 112
Q ss_pred eEEecCC-CCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHh-hCCCeEEEEEeec
Q 012445 300 YRCQADS-GDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLN-EFPQVQSFSAFSN 377 (463)
Q Consensus 300 ~~~~~~~-~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~-~~~~~Y~~~a~~~ 377 (463)
.++..+. +..+..+.++|-+++. .+.....++.+|..+|.... -+++-+.+-+ +-.++-++++...
T Consensus 265 ~tVefp~~Des~G~v~~aW~g~s~-sD~~t~~a~~vL~dyls~sa-----------vapf~~~fVeieDP~assv~f~~~ 332 (1022)
T KOG0961|consen 265 HTVEFPTDDESRGAVEVAWFGHSP-SDLETHSALHVLFDYLSNSA-----------VAPFQKDFVEIEDPLASSVSFHIA 332 (1022)
T ss_pred eeeecCCcccccceEEEEEcCCCH-HHhhhHHHHHHHHHHhcccc-----------ccccccceEEecCccccceeeeee
Confidence 2333332 2246789999999873 35566789999999998642 2445444433 2245555554333
Q ss_pred ccCCcceEEEEEEe-CcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChH
Q 012445 378 IYNHSGMFGIQGTT-GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRM 440 (463)
Q Consensus 378 ~~~~~~~~~i~~~~-~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~ 440 (463)
+.-...+.+.++. +.+++++.-..+++.+.+-.+ ++-+.+.....+.+-+++.+++.+.
T Consensus 333 -~~vrc~i~L~f~gVP~EKi~~~~~k~l~~l~et~~---iDm~Rm~~~i~~t~~~yL~nlE~n~ 392 (1022)
T KOG0961|consen 333 -EGVRCDIRLNFAGVPVEKIDECAPKFLDKLVETAN---IDMERMGYLIDQTILNYLVNLETNA 392 (1022)
T ss_pred -cccceeEEEeecCCcHHHhhhhhHHHHHHHHHhcc---cCHHHHHHHHHHHHHHHHHhhhcCC
Confidence 3333445555554 457777777777776655443 8888888888888888888888664
No 18
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.71 E-value=5.5e-15 Score=155.51 Aligned_cols=339 Identities=18% Similarity=0.200 Sum_probs=230.2
Q ss_pred CCCCCCCceEEEEcCCCcEEEE-ecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCC
Q 012445 71 PDYVEPGKTKISTLPNGVKIAS-ETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGG 149 (463)
Q Consensus 71 ~~~~~~~~~~~~~L~NG~~v~~-~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~ 149 (463)
|..++... ....-.|..+|+. ...++..+++.++++.+. ......+.+.-+...+...||++++..++..+++.+.|
T Consensus 520 p~~~~k~~-l~~~~~~~~~v~~~~~~tn~i~yl~~~~~~~~-l~~~llpyL~L~~~~l~~lgt~~~~y~e~~~~i~~~TG 597 (978)
T COG1026 520 PDPIEKTS-LETEVSNEAKVLHHDLFTNGITYLRLYFDLDM-LPSELLPYLPLFAFALTNLGTETYSYKELLNQIERHTG 597 (978)
T ss_pred CCcccccc-eeeeccCCcceEEeecCCCCeEEEEEEeecCC-CChhhhhhHHHHHHHHHhcCCCCcCHHHHHHHHHHHhC
Confidence 44443333 3344456777774 555577999999999954 44446677777777777789999999999999999877
Q ss_pred eeeeeec-----------cceeEEEEEccCCCHHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHHHHhhcCC-hHHHHHH
Q 012445 150 NVQASAS-----------REQMGYSFDALKTYVPEMVELLIDCVRNPVF-LDWEVNEQLTKVKSEISEVSNN-PQSLLLE 216 (463)
Q Consensus 150 ~~~~~~~-----------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~-~~~~~~~~k~~~~~e~~~~~~~-p~~~~~~ 216 (463)
++++..+ +..+.|++.++..+.+++++++.+++.++.| |.+.+....++++..+.....+ +...+..
T Consensus 598 gis~~~~~~~~~~~~~~~~~~~~i~~K~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~A~~ 677 (978)
T COG1026 598 GISVSLSVDTDPGDDGEYRPSFSISGKALRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSIASS 677 (978)
T ss_pred CceeeEeeccCCCccccccceEEEEEEehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHHHHH
Confidence 6555433 3568899999999999999999999999999 6777888888888888755444 5555555
Q ss_pred HHHHHhc-CCCCCCCCCCC--hHhhccCC-----------HHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCC
Q 012445 217 AIHSAGY-SGALANPLLAP--ESAINRLN-----------STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSD 281 (463)
Q Consensus 217 ~l~~~~~-~~~~~~~~~~~--~~~l~~i~-----------~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~ 281 (463)
......+ ...+.....|. .+-|..+. .+.|++.+++++...++-+++.| .+ ++.+.+++-|-+
T Consensus 678 ~~~s~~~~~~~l~e~~~Gl~q~k~i~~l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~~~~--~~~~~~e~~l~~ 755 (978)
T COG1026 678 LANSRLSSAGALKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDID--KILDLLENPLLK 755 (978)
T ss_pred HhhcccccchhHHHHhcChhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCceEEEEecChh--hhHHHHHHHhhh
Confidence 5554444 33322211111 12222222 35688888899999999888888 33 334444444433
Q ss_pred CCC-----CCCCCCC---CCCCCC-CceEEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCC
Q 012445 282 LPS-----IHPREEP---KSVYTG-GDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGK 352 (463)
Q Consensus 282 lp~-----~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~ 352 (463)
+.. ...+..+ .....+ .......++ +.++.+++|..-...+.++|.+++.|++.+|+.
T Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~--p~a~~~l~fs~~~~~y~hpd~~~l~vls~~L~~----------- 822 (978)
T COG1026 756 FLEHLLPGFELPTPPKNPHLDLISSLSEATIIPS--PVAYNALAFSIGGLPYTHPDYAALQVLSEYLGS----------- 822 (978)
T ss_pred hhcccCcccccCCCCCCcchhhhccccceEEecc--HHHHHHHhhhccCCCCCCccchHHHHHHHHhcc-----------
Confidence 321 1111111 111112 222333344 455555666433323789999999999999994
Q ss_pred CcccHHHHHHHhhCCCeEEEEEeecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 012445 353 GMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAI 432 (463)
Q Consensus 353 g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~ 432 (463)
..||..||++ |++|++++..+. +.|.|.++...+|+ ..+..+.+.+.++.+.+. ++++.++++++-..++.+
T Consensus 823 ---~~lw~~IR~~-GGAYGa~as~~~--~~G~f~f~sYRDPn-~~kt~~v~~~~v~~l~s~-~~~~~d~~~~ilg~i~~~ 894 (978)
T COG1026 823 ---GYLWNKIREK-GGAYGASASIDA--NRGVFSFASYRDPN-ILKTYKVFRKSVKDLASG-NFDERDLEEAILGIISTL 894 (978)
T ss_pred ---chhHHHHHhh-cccccccccccc--CCCeEEEEecCCCc-HHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhhccc
Confidence 7999999998 889999876654 45677766666666 667777888888888775 599999999999998886
Q ss_pred HH
Q 012445 433 LM 434 (463)
Q Consensus 433 ~~ 434 (463)
.+
T Consensus 895 d~ 896 (978)
T COG1026 895 DT 896 (978)
T ss_pred cc
Confidence 65
No 19
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.3e-13 Score=138.28 Aligned_cols=331 Identities=15% Similarity=0.081 Sum_probs=227.4
Q ss_pred EEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeeec--
Q 012445 80 KISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS-- 156 (463)
Q Consensus 80 ~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~-- 156 (463)
.....-||++|...+.+ +...++++.+..++.-+. -.+-+.-+++.++..||...+..++.+++..+.|+++++..
T Consensus 562 ~~v~dingvkv~~~dl~tngi~Y~r~~~~l~~~p~e-L~PylPlfc~sll~lGt~~lsf~el~qqI~rkTGGiS~~p~~~ 640 (998)
T KOG2019|consen 562 LEVGDINGVKVQRCDLFTNGITYTRVVFDLNSLPEE-LLPYLPLFCQSLLNLGTGDLSFVELEQQIGRKTGGISVSPLVS 640 (998)
T ss_pred eeeeeccCceeEEeeccCCceEEEEEeeccccCcHH-hhcchHHHHHHHHhcCCCcccHHHHHHHhhhhcCceeecceec
Confidence 44566799999977766 459999999999996664 45678889999999999999999999999999888777653
Q ss_pred --------cceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHH-HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCC
Q 012445 157 --------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDW-EVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGA 226 (463)
Q Consensus 157 --------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~-~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~ 226 (463)
.-.+.|...++..+.+++++++...+.++.|.++ .|+.......+++.+.-.+....+...-..+++ ...
T Consensus 641 s~~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~~n~i~dsGH~~A~~rs~a~l~~ag 720 (998)
T KOG2019|consen 641 SDDGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAMLTPAG 720 (998)
T ss_pred cCCCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHhhccCCcccchhHhhhhhcccCccc
Confidence 1247788889999999999999999999999854 477777777777765444433322222222222 111
Q ss_pred CCCCCCCChHhh------ccCC-------HHHHHHHHHhhccCCCeEEEEeC--CCHHHHHHHHHhhhCCCCC-CCCCCC
Q 012445 227 LANPLLAPESAI------NRLN-------STLLEEFVAENYTGPRMVLAASG--VEHDQLVSVAEPLLSDLPS-IHPREE 290 (463)
Q Consensus 227 ~~~~~~~~~~~l------~~i~-------~~~l~~f~~~~~~~~~~~l~i~G--~~~~~l~~l~~~~~~~lp~-~~~~~~ 290 (463)
+-...++-.+.+ .+.. .+.|.++.+.....++|.+.|.- ..+..+++.+++++..+|. .+....
T Consensus 721 ~i~EqlgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q~~~vEkav~kFl~~lp~e~p~g~~ 800 (998)
T KOG2019|consen 721 WISEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNVEKAVEKFLDSLPRENPSGSK 800 (998)
T ss_pred chHhHhcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCcccchhHHHHHHHHHHhccccCCCCCc
Confidence 111112222221 1111 24566666666788999998888 8999999999999998884 222221
Q ss_pred --CCCCC-CCC-ceEEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhC
Q 012445 291 --PKSVY-TGG-DYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEF 366 (463)
Q Consensus 291 --~~~~~-~~~-~~~~~~~~~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~ 366 (463)
..+.. .+. ..++..+. -+..++.-+..+-+ +.+++-..+.|++.+|.. ..|+.+||++
T Consensus 801 st~d~r~p~~~~~i~~~~P~-fqvnyvgka~~~vp--yt~~d~asl~vlS~~lt~--------------k~Lh~evRek- 862 (998)
T KOG2019|consen 801 STWDARLPLRSEAIRVVIPT-FQVNYVGKAGLGVP--YTHPDGASLQVLSKLLTN--------------KWLHDEVREK- 862 (998)
T ss_pred cCccccCCCCceeEEEeccc-cchhhhhhhccccc--CCCCCCcHHHHHHHHHHH--------------HHHHHHHHHh-
Confidence 12221 222 22233332 13455555545544 788999999999999984 8999999998
Q ss_pred CCeEEEEEeecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q 012445 367 PQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAIL 433 (463)
Q Consensus 367 ~~~Y~~~a~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~ 433 (463)
|++|+.++.++.. .|.|.+|-.-+|+ .-+.++.+...-+-++. +.+++++|+.||-.++..+-
T Consensus 863 GGAYGgg~s~~sh--~GvfSf~SYRDpn-~lktL~~f~~tgd~~~~-~~~~~~dldeAkl~~f~~VD 925 (998)
T KOG2019|consen 863 GGAYGGGCSYSSH--SGVFSFYSYRDPN-PLKTLDIFDGTGDFLRG-LDVDQQDLDEAKLGTFGDVD 925 (998)
T ss_pred cCccCCccccccc--cceEEEEeccCCc-hhhHHHhhcchhhhhhc-CCccccchhhhhhhhccccc
Confidence 7799998877755 5677766666655 33555555555444444 34999999999988877643
No 20
>PTZ00432 falcilysin; Provisional
Probab=99.60 E-value=4.2e-13 Score=150.05 Aligned_cols=327 Identities=14% Similarity=0.086 Sum_probs=217.2
Q ss_pred EcCCCcEEEEecCCC-CeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeee----c-
Q 012445 83 TLPNGVKIASETSVS-PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA----S- 156 (463)
Q Consensus 83 ~L~NG~~v~~~~~~~-~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~----~- 156 (463)
...+|++|+..+.+. ..+++.++++.....+. ..+-+.-|..-+...||++++..++...++...|++++++ +
T Consensus 664 ~~~~~~~~~~~~~~TnGi~y~~~~fdl~~l~~e-~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~~ 742 (1119)
T PTZ00432 664 SDGGSVTVLVHPIESRGILYLDFAFSLDSLTVD-ELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFYSET 742 (1119)
T ss_pred ccCCCcceEEEecCCCCeEEEEEEecCCCCCHH-HHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEeccc
Confidence 346789999766664 49999999999976653 3333443434445569999999999999999877766542 2
Q ss_pred -----------cceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHh-
Q 012445 157 -----------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE-VNEQLTKVKSEISEVSN-NPQSLLLEAIHSAG- 222 (463)
Q Consensus 157 -----------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~-~~~~k~~~~~e~~~~~~-~p~~~~~~~l~~~~- 222 (463)
...+.+++.++.++++++++++.+++.++.|++.+ +....++.+..+.+... +....+...+.+..
T Consensus 743 ~~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~S 822 (1119)
T PTZ00432 743 NNLTYDDPYNGVGYLNVRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKFS 822 (1119)
T ss_pred cccccCcccccceEEEEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 23688999999999999999999999999998765 77777777777764433 44444433222211
Q ss_pred ---c--CCCCCCCCCCChHh---------hccCCHHHHHHHHHhhccCCCeEEEEeC-C-CHHHHHHHHHhhhCCCCCC-
Q 012445 223 ---Y--SGALANPLLAPESA---------INRLNSTLLEEFVAENYTGPRMVLAASG-V-EHDQLVSVAEPLLSDLPSI- 285 (463)
Q Consensus 223 ---~--~~~~~~~~~~~~~~---------l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~-~~~~l~~l~~~~~~~lp~~- 285 (463)
+ +.-.|.+.+--.+. .+.+ .++|.++++..|+.+++.+.++| . ..+.+.+.+...+..++..
T Consensus 823 ~~~~~~e~~~G~~~~~fl~~l~~~~~e~~~~~v-~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~~~ 901 (1119)
T PTZ00432 823 VSDYADELVNGYSQLLFLKETLVPLAEKDWSKV-ESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSSTF 901 (1119)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhccccc
Confidence 1 00011110000111 1112 35588888999999999999999 5 5566777667777777522
Q ss_pred ---C--CCCC-CCC------CCC--CCceEEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCC
Q 012445 286 ---H--PREE-PKS------VYT--GGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPG 351 (463)
Q Consensus 286 ---~--~~~~-~~~------~~~--~~~~~~~~~~~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g 351 (463)
. .... ... .+. .....+..++ ...+++.+..... ..+++..++.|+..+|..
T Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~--~V~yv~~~~~~~~--~~~~~~~~l~Vl~~~L~~---------- 967 (1119)
T PTZ00432 902 KENDNKSSDKVWVKEVLDKKLMESVDKNEFIVLPT--RVNFVGMGGKLFD--KSDKVDGSFQVIVHYLKN---------- 967 (1119)
T ss_pred ccccccccccccccccccccccCCcccceEEEccC--ceeEEEEeccccc--CCCccCHHHHHHHHHHcc----------
Confidence 1 0100 010 011 1223344455 6677777744333 467779999999999984
Q ss_pred CCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHH
Q 012445 352 KGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVAT--PGEVDQVQLDRAKQSTK 429 (463)
Q Consensus 352 ~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~l~~l~~--~g~vt~~el~~aK~~~~ 429 (463)
..||..||++ |++|++++.... .|.|.++..-+|. +.+.++.+.+....+.+ . .+|+++++++|-..+
T Consensus 968 ----~yLw~~IR~~-GGAYG~~~~~~~---~G~~~f~SYRDPn-~~~Tl~~f~~~~~~l~~~~~-~~~~~~l~~~iig~~ 1037 (1119)
T PTZ00432 968 ----SYLWKTVRMS-LGAYGVFADLLY---TGHVIFMSYADPN-FEKTLEVYKEVASALREAAE-TLTDKDLLRYKIGKI 1037 (1119)
T ss_pred ----ccchHHHccc-CCccccCCccCC---CCeEEEEEecCCC-HHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHH
Confidence 7999999998 779999865542 4666655555554 55666666666665555 3 399999999999999
Q ss_pred HHHHHh
Q 012445 430 SAILMN 435 (463)
Q Consensus 430 ~~~~~~ 435 (463)
+.+-.-
T Consensus 1038 ~~~D~p 1043 (1119)
T PTZ00432 1038 SNIDKP 1043 (1119)
T ss_pred hccCCC
Confidence 887653
No 21
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=5.2e-08 Score=98.57 Aligned_cols=323 Identities=13% Similarity=0.131 Sum_probs=203.4
Q ss_pred ecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhc------CCCCC----CCHHHHHHHHHHcCCeeeeee-----cc
Q 012445 93 ETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAF------RSTRN----RSHLRIVREVEAIGGNVQASA-----SR 157 (463)
Q Consensus 93 ~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~------~gt~~----~s~~~l~~~l~~~g~~~~~~~-----~~ 157 (463)
..-|+..+.+..+++.....- .....-.+...+++ .|+-+ .+..++.+.+....++.+..+ -+
T Consensus 556 ~h~ps~Fvel~fl~dss~i~~--sl~pYl~~f~~l~~~~pa~ldgtiptp~~~s~~~v~~~~~s~~id~si~~g~~G~~~ 633 (1022)
T KOG0961|consen 556 HHCPSKFVELFFLLDSSNISI--SLRPYLFLFTDLLFESPAMLDGTIPTPVLTSADDVAKHFTSDLIDHSIQVGVSGLYD 633 (1022)
T ss_pred ccCchHHHhHhhhhccccCch--hhhhHHHHHHHHHhcCHHHhcCCCCcchhhhHHHHHHHHHhhhhhhhhcccccccch
Confidence 334445666666666665552 23333333444433 35544 355666666655544433333 35
Q ss_pred ceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCC--CCCC
Q 012445 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANP--LLAP 234 (463)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~--~~~~ 234 (463)
+-..+.+.+..++.+..++++..++....||++.+....+++..++..++.|....+.......+| .+.+-.. .+-.
T Consensus 634 ~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg~~vlss~~~~~lY~~~slk~s~d~L~~ 713 (1022)
T KOG0961|consen 634 RLVNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDGCTVLSSAVASMLYGKNSLKISFDELVL 713 (1022)
T ss_pred hheeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcCccEehHHHHHHHHhcccchhhcccHHHH
Confidence 678899999999999999999999999999999999999999999999999998888989898888 5544322 2222
Q ss_pred hHhhccCCH----------HHHHHHHHhhccCCCeEEEEeC-CC-HHHHHHHHHhhhCCCCCCCCCCC----------CC
Q 012445 235 ESAINRLNS----------TLLEEFVAENYTGPRMVLAASG-VE-HDQLVSVAEPLLSDLPSIHPREE----------PK 292 (463)
Q Consensus 235 ~~~l~~i~~----------~~l~~f~~~~~~~~~~~l~i~G-~~-~~~l~~l~~~~~~~lp~~~~~~~----------~~ 292 (463)
++-++.|.. +.++...+-....+.+.+.++| ++ .+....-...++.+ |....|.. ..
T Consensus 714 Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~kid~~~~~Wn~l~~~-~~~~nP~~~f~~tf~~~~~~ 792 (1022)
T KOG0961|consen 714 EKLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDKIDPKMLSWNWLQAD-PRFGNPGHQFSATFEAGENV 792 (1022)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhcCCccccCchhhhcC-cccCCchhhcccccccCccc
Confidence 333343321 2222222212245788889999 64 22211112222222 11111110 11
Q ss_pred CC-CCCCce--EEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCe
Q 012445 293 SV-YTGGDY--RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQV 369 (463)
Q Consensus 293 ~~-~~~~~~--~~~~~~~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~ 369 (463)
+. +..+.. .+..+ ++..+.+....+....| .+++.+...+++++|+. |..++|..||-. |++
T Consensus 793 s~e~gsssk~~~I~~p-~sESs~l~~sip~~~~w-~dpel~~~~l~~~YL~~------------~eGPfW~~IRG~-GLA 857 (1022)
T KOG0961|consen 793 SLELGSSSKELLIGVP-GSESSFLYQSIPLDANW-NDPELIPAMLFGQYLSQ------------CEGPFWRAIRGD-GLA 857 (1022)
T ss_pred ceeccCCcceeEecCC-Cccccceeeeccccccc-CCcchhHHHHHHHHHHh------------cccchhhhhccc-chh
Confidence 11 112222 22222 22445444444454454 67899999999999986 558999999987 999
Q ss_pred EEEEEeecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHhc
Q 012445 370 QSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVAT-PGEVDQVQLDRAKQSTKSAILMNL 436 (463)
Q Consensus 370 Y~~~a~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~l~~l~~-~g~vt~~el~~aK~~~~~~~~~~~ 436 (463)
|++..+...-.+...|.||...++.++.+.- .+.++++.. .|++++.+|+.||...+..+....
T Consensus 858 YGanm~~~~d~~~~~~~iyr~ad~~kaye~~---rdiV~~~vsG~~e~s~~~~egAk~s~~~~~~~~E 922 (1022)
T KOG0961|consen 858 YGANMFVKPDRKQITLSIYRCADPAKAYERT---RDIVRKIVSGSGEISKAEFEGAKRSTVFEMMKRE 922 (1022)
T ss_pred ccceeEEeccCCEEEEEeecCCcHHHHHHHH---HHHHHHHhcCceeecHHHhccchHHHHHHHHHHh
Confidence 9999888777677777788777776554444 444455555 457999999999999998876544
No 22
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=98.34 E-value=3.5e-05 Score=75.54 Aligned_cols=185 Identities=19% Similarity=0.265 Sum_probs=113.9
Q ss_pred EEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeeeccceeE
Q 012445 82 STLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMG 161 (463)
Q Consensus 82 ~~L~NG~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~ 161 (463)
..|+||+||+..+.-...+++++. +.|.-.+-.+--|+||||||++- .+++..+ ..||+|+|.++.
T Consensus 2 IvL~NGVRiFin~~M~KDIYlGIs-~FGFe~DI~~iLGiAHLLEHILI----sFD~~~F---------~ANASTaRsYMS 67 (590)
T PF03410_consen 2 IVLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILI----SFDSSKF---------LANASTARSYMS 67 (590)
T ss_pred eEecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHee----ecchHHh---------hcccchhhhhhh
Confidence 579999999988777778888875 45555555678999999999973 2333332 368899999999
Q ss_pred EEEEccCCC-HHHHHHHHHHhhhCC-----CCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCCCCCCC
Q 012445 162 YSFDALKTY-VPEMVELLIDCVRNP-----VFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY--SGALANPLLA 233 (463)
Q Consensus 162 ~~~~~~~~~-l~~~l~ll~~~~~~p-----~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~--~~~~~~~~~~ 233 (463)
|.+.+.... -.+++..+..+|..- .|+...++...+.+..|+-- .|-...-++. +.| ++.+.+ .|
T Consensus 68 FWC~si~g~~~~DAvrtliSWFF~~g~Lk~~F~~~~i~~hikELENEYYF--RnEvfHCmDv---LtfL~gGDLYN--GG 140 (590)
T PF03410_consen 68 FWCKSIRGRTYIDAVRTLISWFFDNGKLKDNFSRSKIKNHIKELENEYYF--RNEVFHCMDV---LTFLGGGDLYN--GG 140 (590)
T ss_pred hhhhhccCCChhHHHHHHHHHhhcCCcccccccHhHHHHHHHHHhhhhhh--hhhHHHHHHH---HHHhcCCcccC--Cc
Confidence 999888764 456666666655442 35555555555444444321 1111122222 334 333333 23
Q ss_pred ChHhhccCCH--HHHHHHHHhhccCCCeEEEEeCCCHHHHHHHHHhhhCCCCCCCCCC
Q 012445 234 PESAINRLNS--TLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPRE 289 (463)
Q Consensus 234 ~~~~l~~i~~--~~l~~f~~~~~~~~~~~l~i~G~~~~~l~~l~~~~~~~lp~~~~~~ 289 (463)
....+++++. +.|.+-.+ ....+++++.+--++ +.++.++++.||.+|+.+..-
T Consensus 141 Ri~ML~~l~~i~~mL~~RM~-~I~GpniVIFVk~l~-~~~l~lL~~TFGtLP~cP~~I 196 (590)
T PF03410_consen 141 RIDMLNNLNDIRNMLSNRMH-RIIGPNIVIFVKELN-PNILSLLSNTFGTLPSCPLTI 196 (590)
T ss_pred hHHHHhhhHHHHHHHHHHHH-hhcCCcEEEEEeccC-HHHHHHHHHhcCCCCCCcccc
Confidence 4444554431 22222222 235567666665577 567899999999999877543
No 23
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=98.29 E-value=1.5e-05 Score=75.09 Aligned_cols=132 Identities=21% Similarity=0.249 Sum_probs=87.4
Q ss_pred CCCCCCCCceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcC
Q 012445 70 LPDYVEPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIG 148 (463)
Q Consensus 70 ~~~~~~~~~~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g 148 (463)
++..++..+++...+ +|++|+..+.+ +..+++.++++.....+. ..+-+.-|..-+...||++++..++...+..+.
T Consensus 62 i~~~~~~~~~~~~~~-~~~~v~~~~~~TnGI~Y~~l~fdl~~l~~e-~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~~~t 139 (248)
T PF08367_consen 62 IPREIEKIPLEVEKL-GGIPVLFHEQPTNGIVYVRLYFDLSDLPEE-DLPYLPLLTDLLGELGTKNYSYEELSNEIDLYT 139 (248)
T ss_dssp S-SS------EECCC-TTCEEEEEE---TTEEEEEEEEE-TTS-CC-CHCCHHHHHHHCCCS-BSSS-HHHHHHHHHHHS
T ss_pred cCCCCCCCCceeeec-CCccEEEEEcCCCCeEEEEEEecCCCCCHH-HHHhHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 344444444444443 68999965555 569999999999966543 455565555555667999999999999999998
Q ss_pred Ceeeeeec-----------cceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHH
Q 012445 149 GNVQASAS-----------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE-VNEQLTKVKSEI 203 (463)
Q Consensus 149 ~~~~~~~~-----------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~-~~~~k~~~~~e~ 203 (463)
|++++++. .-.+.+++.|+.++++++++++.+++.+++|++.+ +.....+.+..+
T Consensus 140 GGis~~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil~~~~f~d~~rl~~ll~~~~s~~ 206 (248)
T PF08367_consen 140 GGISFSIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEILTETDFDDKERLKELLKELKSDM 206 (248)
T ss_dssp SEEEEEEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHHHCB-TT-HHHHHHHHHHHHHHH
T ss_pred CCeEEEeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHH
Confidence 88777763 23578999999999999999999999999998654 444444443333
No 24
>PHA03081 putative metalloprotease; Provisional
Probab=98.15 E-value=0.00012 Score=72.01 Aligned_cols=183 Identities=17% Similarity=0.243 Sum_probs=113.4
Q ss_pred EEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeeeccceeE
Q 012445 82 STLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMG 161 (463)
Q Consensus 82 ~~L~NG~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~ 161 (463)
.+|+||+||+..+.-...+++++. +.|.-.+-.+--|++||+||.+- .+++..+ ..++++.+.++.
T Consensus 2 i~~~ngvr~f~~~~m~kdiy~gi~-~fgfe~di~~~lg~ahllehili----~fd~~~f---------~anast~r~yms 67 (595)
T PHA03081 2 IVLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILI----SFDSSKF---------VANASTARSYMS 67 (595)
T ss_pred eEecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHee----ecchHHh---------cccchhhhhhHh
Confidence 579999999988777778888864 45555555678999999999973 2333222 357889999999
Q ss_pred EEEEccCCC-HHHHHHHHHHhhhCCCC-----CHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCCCCCCC
Q 012445 162 YSFDALKTY-VPEMVELLIDCVRNPVF-----LDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY--SGALANPLLA 233 (463)
Q Consensus 162 ~~~~~~~~~-l~~~l~ll~~~~~~p~~-----~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~--~~~~~~~~~~ 233 (463)
|.+.+.... ..+++..+..+|..+.- +...++...+.+..|+-- .|-...-++. +.| ++.+.+ .|
T Consensus 68 fwc~sirg~~y~DAvrtliSWFF~~~~Lr~~F~~~~ik~~ikELENEYYF--RnEvfHCmDv---LTfL~gGDLYN--GG 140 (595)
T PHA03081 68 FWCKSIRGRSYIDAIRTLISWFFDNGKLKDNFSLSKIRNHIKELENEYYF--RNEVFHCMDV---LTFLGGGDLYN--GG 140 (595)
T ss_pred HhhHhhcCCchHHHHHHHHHHhccCCccccccchhhHHHHHHHHhhhhhh--hhhhHHHHHH---HHHhcCCcccC--Cc
Confidence 988777653 46888888888877664 333343333333333221 1111122222 334 333333 23
Q ss_pred ChHhhccCCHHHHHHHHHh---hccCCCeEEEEeCCCHHHHHHHHHhhhCCCCCCCCC
Q 012445 234 PESAINRLNSTLLEEFVAE---NYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR 288 (463)
Q Consensus 234 ~~~~l~~i~~~~l~~f~~~---~~~~~~~~l~i~G~~~~~l~~l~~~~~~~lp~~~~~ 288 (463)
....|++++ ++++...+ ....+++++.+--++ +..+.++++.||.+|+.+..
T Consensus 141 Ri~ML~~l~--~i~~~L~~RM~~I~GpniVIFVk~ln-~~~l~lL~~TFGtLP~~P~~ 195 (595)
T PHA03081 141 RIDMLDNLN--DVRDMLSNRMHRISGPNIVIFVKELN-PNTLSLLNNTFGTLPSCPET 195 (595)
T ss_pred hHHHHhhhH--HHHHHHHHHHHhhcCCcEEEEEeccC-HHHHHHHHHhcCCCCCCccc
Confidence 445555543 33333322 235667666665577 56789999999999987743
No 25
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=96.48 E-value=0.25 Score=42.21 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=87.4
Q ss_pred cCCCCCceEEEEEeecCCCCCCCc--chHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCC
Q 012445 304 ADSGDQLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNH 381 (463)
Q Consensus 304 ~~~~~~~~~v~l~f~~~~~~~~~~--~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~ 381 (463)
.+...+...+.+.|.+.. ..++ ..-...++..++..++ +++.+.=..+..+..|..+++.+.
T Consensus 6 ~~~~~~~~~~~l~~~~Gs--~~e~~~~~G~a~ll~~l~~~gs--------~~~~~~~l~~~l~~~G~~~~~~t~------ 69 (149)
T PF00675_consen 6 EDPGSPVVSVSLVFKAGS--RYEPPGKPGLAHLLEHLLFRGS--------KKYSSDELQEELESLGASFNASTS------ 69 (149)
T ss_dssp ESTTSSEEEEEEEES-SG--GGSCTTTTTHHHHHHHHTTSBB--------SSSBHHHHHHHHHHTTCEEEEEEE------
T ss_pred EcCCCCEEEEEEEEeecc--CCCCCCCCchhhhhhhhccccc--------chhhhhhhHHHhhhhccccceEec------
Confidence 333336778888887754 3332 2356777877775442 223343334555666877655543
Q ss_pred cceEEEEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCc
Q 012445 382 SGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE 455 (463)
Q Consensus 382 ~~~~~i~~~~~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~ 455 (463)
.-.+.+++.+.+++..++++.+.+.+..- .++++++++.|..++.++....++....+.......+..|.
T Consensus 70 ~d~t~~~~~~~~~~~~~~l~~l~~~~~~P----~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~ 139 (149)
T PF00675_consen 70 RDSTSYSASVLSEDLEKALELLADMLFNP----SFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGH 139 (149)
T ss_dssp SSEEEEEEEEEGGGHHHHHHHHHHHHHSB----GGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTS
T ss_pred ccceEEEEEEecccchhHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccC
Confidence 23456778888888888888887766554 39999999999999999999888876666666666665544
No 26
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.22 Score=48.68 Aligned_cols=177 Identities=12% Similarity=0.115 Sum_probs=113.5
Q ss_pred CcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhh-----cCCCCCCCHHHHHHHHHHc-CCe--eee---ee
Q 012445 87 GVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMA-----FRSTRNRSHLRIVREVEAI-GGN--VQA---SA 155 (463)
Q Consensus 87 G~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~-----~~gt~~~s~~~l~~~l~~~-g~~--~~~---~~ 155 (463)
|-.|-..+.+-|.+.+.+.+.+-+-..++ +-...+...++ +.|.+......|.+.+... +++ .++ |.
T Consensus 258 gsEvR~rdd~lP~a~~AiAVEG~~w~~pD--~~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~sfqsFnt~Yk 335 (467)
T KOG0960|consen 258 GSEVRVRDDDLPLAHIAIAVEGVSWAHPD--YFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHSFQSFNTSYK 335 (467)
T ss_pred CceeeecCCCCchhheeeeEecCCcCCcc--HHHHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHHHhhhhcccc
Confidence 66677777888999999999988877653 33333333333 2355554455555554432 221 122 22
Q ss_pred ccceeEEEEEc-cCCCHHHHHHHHHHhhhC--CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCC
Q 012445 156 SREQMGYSFDA-LKTYVPEMVELLIDCVRN--PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 231 (463)
Q Consensus 156 ~~~~~~~~~~~-~~~~l~~~l~ll~~~~~~--p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~ 231 (463)
+..-.++++-+ ....++.++..+..-... ...++.+++++|..++..+-...+.......+.-.++++ +.. .|+
T Consensus 336 DTGLwG~y~V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grr--i~l 413 (467)
T KOG0960|consen 336 DTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRR--IPL 413 (467)
T ss_pred cccceeEEEEecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCc--CCh
Confidence 33345566666 566777777755443322 268999999999999999886544333345555555555 322 233
Q ss_pred CCChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CC
Q 012445 232 LAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VE 267 (463)
Q Consensus 232 ~~~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~ 267 (463)
-.....|+.|+.++++++..+++-...+.++++| +.
T Consensus 414 ~El~~rId~vt~~~Vr~va~k~iyd~~iAia~vG~ie 450 (467)
T KOG0960|consen 414 AELEARIDAVTAKDVREVASKYIYDKDIAIAAVGPIE 450 (467)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhhcCCcceeeecccc
Confidence 2244789999999999999999888889999999 63
No 27
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=95.69 E-value=0.12 Score=55.59 Aligned_cols=80 Identities=11% Similarity=0.037 Sum_probs=65.5
Q ss_pred CceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEEE
Q 012445 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 388 (463)
Q Consensus 309 ~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~ 388 (463)
..+.+.+.++.|. .+..+.++..+|.+++. .++|++||-+.+++|.|+|.+....+...+-+-
T Consensus 614 ~e~alllf~p~~~--~~~~~~aa~rlla~l~~---------------~~f~qrlRve~qlGY~v~~~~~~~~~~~gllf~ 676 (696)
T TIGR02110 614 GEQALLLFCPLPT--ADVASEAAWRLLAQLLE---------------PPFFQRLRVELQLGYVVFCRYRRVADRDGLLFA 676 (696)
T ss_pred CCcEEEEEecCCC--CCHHHHHHHHHHHHHhc---------------hhHHHHHHHhhccceEEEEeeEEcCCcceeEEE
Confidence 4667777788886 57788999999999999 899999999999999999999877766666667
Q ss_pred EEeCcccHHHHHHHHHH
Q 012445 389 GTTGSDFVSKAIDLAAR 405 (463)
Q Consensus 389 ~~~~~~~~~~~i~~~~~ 405 (463)
++++.-...++.+.+..
T Consensus 677 ~QSP~~~~~~l~~h~~~ 693 (696)
T TIGR02110 677 LQSPDASARELLQHIKR 693 (696)
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 88877767666665544
No 28
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.16 Score=49.54 Aligned_cols=121 Identities=16% Similarity=0.052 Sum_probs=86.2
Q ss_pred HHHHcCCeeeeeeccceeEEEEEccCCCHHHHHHHHHHhhhC--CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 012445 143 EVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRN--PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHS 220 (463)
Q Consensus 143 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~--p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~ 220 (463)
+++.+.+--..|.+..-++++++++++...++++++..-+.+ -..++++++++|.+++..+-.....-.-.+.|.-++
T Consensus 320 wv~sctAfnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQ 399 (472)
T KOG2067|consen 320 WVYSCTAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQ 399 (472)
T ss_pred HHHHhhhhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHH
Confidence 445556666777788889999999999999999999876654 337899999999999999885444433345555555
Q ss_pred HhcCCCCCCCCCCChHhhccCCHHHHHHHHHhhccCCCeEEEEeC
Q 012445 221 AGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 265 (463)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G 265 (463)
.+-.+ ...++..-.+.|++++.+|+.++-.+.++ .+.+++..|
T Consensus 400 VL~~g-~rk~p~e~~~~Ie~lt~~DI~rva~kvlt-~~p~va~~G 442 (472)
T KOG2067|consen 400 VLTTG-ERKPPDEFIKKIEQLTPSDISRVASKVLT-GKPSVAAFG 442 (472)
T ss_pred HHhcc-CcCCHHHHHHHHHhcCHHHHHHHHHHHhc-CCceeccCC
Confidence 54321 12232223477899999999999998875 445555555
No 29
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=92.38 E-value=3 Score=42.68 Aligned_cols=80 Identities=11% Similarity=0.057 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-
Q 012445 187 FLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG- 265 (463)
Q Consensus 187 ~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G- 265 (463)
+++++++..+..+...+-...++|...+........+..+.. ....-.+.|+.++.+++.++.++++.+.+++++++|
T Consensus 352 ~t~~~~~~~k~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~~~~~p 430 (438)
T COG0612 352 FTEEELDAAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSLI-TLEELLERIEAVTLEDVNAVAKKLLAPENLTIVVLGP 430 (438)
T ss_pred CCHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCcc-CHHHHHHHHHhcCHHHHHHHHHHhcCCCCcEEEEEcc
Confidence 889999999999988888888888877776666655432221 222345889999999999999999999999999999
Q ss_pred CC
Q 012445 266 VE 267 (463)
Q Consensus 266 ~~ 267 (463)
..
T Consensus 431 ~~ 432 (438)
T COG0612 431 EK 432 (438)
T ss_pred cc
Confidence 54
No 30
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=87.33 E-value=5.1 Score=34.62 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=67.2
Q ss_pred CcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHH-HcCC--eeeeeec----cce
Q 012445 87 GVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE-AIGG--NVQASAS----REQ 159 (463)
Q Consensus 87 G~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~-~~g~--~~~~~~~----~~~ 159 (463)
+-.+.....+.+...+.+.+.+..... ........++.+++..+ ....+...+. ..+. +++++.. ...
T Consensus 67 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~l~~~l~~~----~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~ 141 (184)
T PF05193_consen 67 GKEIVIPSKDESQSIVSIAFPGPPIKD-SKDYFALNLLSSLLGNG----MSSRLFQELREKQGLAYSVSASNSSYRDSGL 141 (184)
T ss_dssp EEEEEEEESSSSSEEEEEEEEEEETGT-STTHHHHHHHHHHHHCS----TTSHHHHHHHTTTTSESEEEEEEEEESSEEE
T ss_pred ccccccccccccccccccccccccccc-cchhhHHHHHHHHHhcC----ccchhHHHHHhccccceEEEeeeeccccceE
Confidence 444555444546666667777666522 24666778888888654 3345555565 4443 3333322 244
Q ss_pred eEEEEEccCCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHH
Q 012445 160 MGYSFDALKTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKV 199 (463)
Q Consensus 160 ~~~~~~~~~~~l~~~l~ll~~~~~~---p~~~~~~~~~~k~~~ 199 (463)
+.+.+.+.++++.++++.+.+.+.. -.+++++|++.|+.+
T Consensus 142 ~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 142 FSISFQVTPENLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred EEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 6777788888888888877776644 248999999998764
No 31
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=84.22 E-value=1.4 Score=26.59 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=21.4
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHH
Q 012445 404 ARELISVATPGEVDQVQLDRAKQSTK 429 (463)
Q Consensus 404 ~~~l~~l~~~g~vt~~el~~aK~~~~ 429 (463)
++.|..+...|.+|++|+++.|+.++
T Consensus 5 L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 5 LEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 45677777778899999999998865
No 32
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=80.67 E-value=50 Score=30.87 Aligned_cols=120 Identities=18% Similarity=0.188 Sum_probs=71.5
Q ss_pred CceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCe-EEEEEeecc---cCCcce
Q 012445 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQV-QSFSAFSNI---YNHSGM 384 (463)
Q Consensus 309 ~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~-Y~~~a~~~~---~~~~~~ 384 (463)
.-+++.+.|..+. ...++...+.++..+|+.-|. ... =+.-|-..+...-|+. .++.+.... ..-...
T Consensus 90 GI~Y~~l~fdl~~--l~~e~l~yl~Ll~~ll~~lgT-----~~~-sy~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~ 161 (248)
T PF08367_consen 90 GIVYVRLYFDLSD--LPEEDLPYLPLLTDLLGELGT-----KNY-SYEELSNEIDLYTGGISFSIEVYTDYDDDDKYRPY 161 (248)
T ss_dssp TEEEEEEEEE-TT--S-CCCHCCHHHHHHHCCCS-B-----SSS--HHHHHHHHHHHSSEEEEEEEEEEEECTECCCEEE
T ss_pred CeEEEEEEecCCC--CCHHHHHhHHHHHHHHHhCCC-----CCC-CHHHHHHHHHHhCCCeEEEeeeccCCCCccceeEE
Confidence 5799999999997 677888899999999986432 111 1223333344444422 222222222 112356
Q ss_pred EEEEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHHHHHHhccChH
Q 012445 385 FGIQGTTGSDFVSKAIDLAARELISVATPGEVDQV-QLDRAKQSTKSAILMNLESRM 440 (463)
Q Consensus 385 ~~i~~~~~~~~~~~~i~~~~~~l~~l~~~g~vt~~-el~~aK~~~~~~~~~~~~s~~ 440 (463)
|.+.+.|-.++++++++.+.+.+.+. .+++. .+.....+.++.+..++.+++
T Consensus 162 l~is~k~L~~~~~~~~~ll~eil~~~----~f~d~~rl~~ll~~~~s~~~~~i~~~G 214 (248)
T PF08367_consen 162 LVISAKCLDEKLDEAFELLSEILTET----DFDDKERLKELLKELKSDMESSIISSG 214 (248)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHCB-----TT-HHHHHHHHHHHHHHHHHHHHH-H
T ss_pred EEEEEEeHhhhHHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHHHHHHhhhhhH
Confidence 77788888999999999988887664 36655 455555666665555544433
No 33
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=36.79 E-value=34 Score=29.94 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=33.8
Q ss_pred HhhccCCHHHHHHHHHhhc-cCCCeEEEEeC-CCHHHHHHHHHh
Q 012445 236 SAINRLNSTLLEEFVAENY-TGPRMVLAASG-VEHDQLVSVAEP 277 (463)
Q Consensus 236 ~~l~~i~~~~l~~f~~~~~-~~~~~~l~i~G-~~~~~l~~l~~~ 277 (463)
=.+++.+++++++..+..- .+.++.+.++| ++.+.+.++++.
T Consensus 104 I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~ 147 (169)
T PF01729_consen 104 IMLDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKT 147 (169)
T ss_dssp EEEES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHT
T ss_pred EEecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhc
Confidence 3467889999999998654 45679999999 999999988865
No 34
>COG5023 Tubulin [Cytoskeleton]
Probab=35.11 E-value=1.7e+02 Score=29.05 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=54.2
Q ss_pred CCCCCCCCcccHHHHHHHhhCC----CeEEEEEeec-------ccCCcceEEEEEEeCcccHHHHH----HHHHHHHH-H
Q 012445 346 SAGGPGKGMYSRLYRRVLNEFP----QVQSFSAFSN-------IYNHSGMFGIQGTTGSDFVSKAI----DLAARELI-S 409 (463)
Q Consensus 346 s~g~~g~g~~s~L~~~lR~~~~----~~Y~~~a~~~-------~~~~~~~~~i~~~~~~~~~~~~i----~~~~~~l~-~ 409 (463)
=+||.|.||.+.|-++||++++ +.|+|..... +|+. .+.++.. -++.+..+ +++.+... .
T Consensus 139 ~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p~~Sd~VVePYNs--vLt~h~l--~ensD~tf~~DNeal~di~~~~ 214 (443)
T COG5023 139 LGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVVVEPYNS--VLTLHRL--LENSDCTFVVDNEALYDICRRN 214 (443)
T ss_pred ccCcCcccHHHHHHHHHHHhcchhheeEEEeccCCccCcceecccHH--HHHHHHH--HhcCCceEEechHHHHHHHHHh
Confidence 3689999999999999999876 4555543110 1110 0000000 01111000 12222222 3
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHH
Q 012445 410 VATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDI 446 (463)
Q Consensus 410 l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l 446 (463)
+.- ++++=+++++....+.+.+...+.=+.+.-.++
T Consensus 215 L~i-~~P~y~~lN~LIs~VmSsvTtslRfpG~ln~dl 250 (443)
T COG5023 215 LRI-QNPSYDDLNQLISTVMSSVTTSLRFPGYLNVDL 250 (443)
T ss_pred cCC-CCCChHHHHHHHHHHHHhhhheeecCccccchH
Confidence 333 348899999999999999888876665554444
No 35
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=31.33 E-value=1.5e+02 Score=22.27 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Q 012445 401 DLAARELISVATPGEVDQVQLDRAKQSTKSAILM 434 (463)
Q Consensus 401 ~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~ 434 (463)
..-+.++......|++|++++++....++..+..
T Consensus 34 ~~~L~~L~~~~e~GEIseeEf~~~E~eLL~rL~~ 67 (79)
T PF05120_consen 34 RRELAELQEALEAGEISEEEFERREDELLDRLEE 67 (79)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3344445555566789999999999998887764
No 36
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=30.61 E-value=39 Score=33.35 Aligned_cols=45 Identities=29% Similarity=0.450 Sum_probs=33.9
Q ss_pred HHHHHHHhhCCCCCC--------CCCCCCCCcccHHHHHHHhhCC----CeEEEEEe
Q 012445 331 TLTVLQMLLGGGGSF--------SAGGPGKGMYSRLYRRVLNEFP----QVQSFSAF 375 (463)
Q Consensus 331 ~~~vl~~lL~g~~~f--------s~g~~g~g~~s~L~~~lR~~~~----~~Y~~~a~ 375 (463)
.+.++..=..|..+| -|||.|.||.+.|-++|++++. ..|+|...
T Consensus 118 ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~drypkkliqtysVfPn 174 (448)
T KOG1374|consen 118 IMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPKKLVQTYSVFPN 174 (448)
T ss_pred HHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHhchhhhheeeeeccC
Confidence 456666666777777 4899999999999999998764 46666543
No 37
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=26.07 E-value=1.2e+02 Score=28.73 Aligned_cols=42 Identities=24% Similarity=0.262 Sum_probs=36.6
Q ss_pred HhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHh
Q 012445 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 277 (463)
Q Consensus 236 ~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~ 277 (463)
=.+++++++++++..+..-.+.+..+-++| ++.+.+..+++.
T Consensus 212 ImLDNm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~t 254 (280)
T COG0157 212 IMLDNMSPEELKEAVKLLGLAGRALLEASGGITLENIREYAET 254 (280)
T ss_pred EEecCCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhc
Confidence 446899999999999987667899999999 999999888765
No 38
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=24.18 E-value=1.9e+02 Score=19.88 Aligned_cols=46 Identities=9% Similarity=-0.012 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCeeeeee-ccceeEEEEEccCCCHHHHHHHHHHhhh
Q 012445 138 LRIVREVEAIGGNVQASA-SREQMGYSFDALKTYVPEMVELLIDCVR 183 (463)
Q Consensus 138 ~~l~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~l~~~l~ll~~~~~ 183 (463)
.++.+.+...|.++..-. +.....+++.+..++.+.+++.|++.+.
T Consensus 19 ~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~ 65 (66)
T cd04922 19 ATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFF 65 (66)
T ss_pred HHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence 345666777888775443 2244788888888999999999888765
No 39
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.49 E-value=1.5e+02 Score=28.63 Aligned_cols=40 Identities=28% Similarity=0.396 Sum_probs=33.7
Q ss_pred HhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHh
Q 012445 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 277 (463)
Q Consensus 236 ~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~ 277 (463)
=.+++++++++++..... +.+..+-++| ++.+.+.++++.
T Consensus 229 ImLDnmspe~l~~av~~~--~~~~~lEaSGGIt~~ni~~yA~t 269 (294)
T PRK06978 229 VLLDNFTLDMMREAVRVT--AGRAVLEVSGGVNFDTVRAFAET 269 (294)
T ss_pred EEECCCCHHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhc
Confidence 446899999999988754 4689999999 999999998875
No 40
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=23.01 E-value=1.5e+02 Score=28.66 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=33.6
Q ss_pred HhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHh
Q 012445 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 277 (463)
Q Consensus 236 ~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~ 277 (463)
=.+++++++++++..+.. ..+..+-++| ++.+.+..+++.
T Consensus 232 I~LDn~s~e~~~~av~~~--~~~~~ieaSGGI~~~ni~~yA~t 272 (296)
T PRK09016 232 IMLDNFTTEQMREAVKRT--NGRALLEVSGNVTLETLREFAET 272 (296)
T ss_pred EEeCCCChHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhc
Confidence 346889999999999853 4589999999 999999988765
No 41
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.94 E-value=1.6e+02 Score=28.38 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=34.0
Q ss_pred HhhccCCHHHHHHHHHhhc-cCCCeEEEEeC-CCHHHHHHHHHh
Q 012445 236 SAINRLNSTLLEEFVAENY-TGPRMVLAASG-VEHDQLVSVAEP 277 (463)
Q Consensus 236 ~~l~~i~~~~l~~f~~~~~-~~~~~~l~i~G-~~~~~l~~l~~~ 277 (463)
=.+++++++++++.....- ..++..+.++| ++.+.+.++++.
T Consensus 223 I~LDnm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~t 266 (289)
T PRK07896 223 VLLDNFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAET 266 (289)
T ss_pred EEeCCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhc
Confidence 3467899999999987531 35789999999 999999998875
No 42
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.62 E-value=2.2e+02 Score=19.55 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCeeeeeec-cceeEEEEEccCCCHHHHHHHHHHhhhC
Q 012445 139 RIVREVEAIGGNVQASAS-REQMGYSFDALKTYVPEMVELLIDCVRN 184 (463)
Q Consensus 139 ~l~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~l~~~l~ll~~~~~~ 184 (463)
++...+...|.++.+-.. .....+++....++.+.+++.+.+.|.+
T Consensus 20 ~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~~~~~lh~~~~~ 66 (66)
T cd04916 20 RATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIYEEFFN 66 (66)
T ss_pred HHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 455667777777655432 2347788888889999999999887753
No 43
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.61 E-value=1.5e+02 Score=28.34 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=32.5
Q ss_pred hhccCCHHHHHHHHHhhc---cCCCeEEEEeC-CCHHHHHHHHHh
Q 012445 237 AINRLNSTLLEEFVAENY---TGPRMVLAASG-VEHDQLVSVAEP 277 (463)
Q Consensus 237 ~l~~i~~~~l~~f~~~~~---~~~~~~l~i~G-~~~~~l~~l~~~ 277 (463)
.+++++++++++.....- ..+++.+.++| ++.+.+.++++.
T Consensus 207 ~LDn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~t 251 (278)
T PRK08385 207 MLDNMTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKL 251 (278)
T ss_pred EECCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHc
Confidence 367888999888877542 13689999999 999999998875
No 44
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=22.40 E-value=2.5e+02 Score=18.74 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCeeeeeeccceeEEEEEccCCCHHHHHHHHHHhh
Q 012445 137 HLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCV 182 (463)
Q Consensus 137 ~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~ 182 (463)
...+.+.++..++.+.-..-.+...+.+.++.++.+.+.+.|.+..
T Consensus 8 ~~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~~t 53 (56)
T PF09186_consen 8 YGKVERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTDLT 53 (56)
T ss_dssp HHHHHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHHHc
Confidence 4567888999999887776777799999999999999999888754
No 45
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.20 E-value=1.5e+02 Score=28.49 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=33.6
Q ss_pred HhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHh
Q 012445 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 277 (463)
Q Consensus 236 ~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~ 277 (463)
=.+++++++++++..... +.+..+-++| ++.+.+..+++.
T Consensus 221 ImLDnmspe~l~~av~~~--~~~~~leaSGGI~~~ni~~yA~t 261 (290)
T PRK06559 221 IMLDNMSLEQIEQAITLI--AGRSRIECSGNIDMTTISRFRGL 261 (290)
T ss_pred EEECCCCHHHHHHHHHHh--cCceEEEEECCCCHHHHHHHHhc
Confidence 446899999999999743 4589999999 999999988866
No 46
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=20.62 E-value=2.4e+02 Score=19.05 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCeeeeeeccceeEEEEEccCCCHHHHHHHHHHhh
Q 012445 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCV 182 (463)
Q Consensus 138 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~ 182 (463)
.++...+...+.++...... ...+++....++.+.+++.+...|
T Consensus 18 ~~i~~~L~~~~i~v~~i~~s-~~~is~~v~~~d~~~~~~~l~~~~ 61 (63)
T cd04936 18 AKMFEALAEAGINIEMISTS-EIKISCLIDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHHCCCcEEEEEcc-CceEEEEEeHHHHHHHHHHHHHHh
Confidence 35666778888887777543 477888888888888888887765
Done!