Query 012445
Match_columns 463
No_of_seqs 231 out of 1578
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 09:35:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hr6_A Alpha-MPP, mitochondria 100.0 4.3E-58 1.5E-62 473.3 47.3 379 77-458 4-391 (475)
2 3eoq_A Putative zinc protease; 100.0 4.4E-54 1.5E-58 434.5 43.4 364 79-459 2-369 (406)
3 3hdi_A Processing protease; CA 100.0 9.1E-53 3.1E-57 426.7 45.2 363 79-458 2-368 (421)
4 1hr6_B Beta-MPP, mitochondrial 100.0 3.3E-52 1.1E-56 425.3 45.5 377 76-458 4-391 (443)
5 1pp9_A Ubiquinol-cytochrome C 100.0 3.4E-52 1.2E-56 425.8 43.2 374 77-458 12-391 (446)
6 1pp9_B Ubiquinol-cytochrome C 100.0 5.2E-51 1.8E-55 415.6 48.5 374 75-457 20-393 (439)
7 3ami_A Zinc peptidase; alpha/b 100.0 6.5E-51 2.2E-55 416.2 43.3 364 77-454 5-381 (445)
8 3gwb_A Peptidase M16 inactive 100.0 1.4E-49 4.9E-54 404.4 40.7 363 76-455 11-380 (434)
9 3amj_B Zinc peptidase inactive 100.0 1.2E-48 4E-53 396.6 42.7 362 77-456 2-374 (424)
10 3cx5_A Cytochrome B-C1 complex 100.0 3.4E-48 1.2E-52 393.8 39.6 363 80-458 2-376 (431)
11 3d3y_A Uncharacterized protein 100.0 2.2E-44 7.4E-49 364.9 41.1 356 82-457 6-386 (425)
12 1q2l_A Protease III; hydrolase 100.0 2.8E-44 9.5E-49 399.6 40.7 364 75-452 17-398 (939)
13 3go9_A Insulinase family prote 100.0 2.4E-43 8.3E-48 364.3 31.3 351 77-454 24-403 (492)
14 3cww_A Insulysin, insulin-degr 100.0 6.1E-41 2.1E-45 374.7 39.4 362 75-451 31-413 (990)
15 2fge_A Atprep2;, zinc metallop 100.0 2.4E-40 8.4E-45 369.8 32.2 364 77-458 36-438 (995)
16 3s5m_A Falcilysin; M16 metallo 100.0 3.9E-39 1.3E-43 358.2 35.0 368 75-457 83-542 (1193)
17 3cx5_B Cytochrome B-C1 complex 100.0 4.9E-39 1.7E-43 318.0 29.6 311 88-439 1-316 (352)
18 1q2l_A Protease III; hydrolase 100.0 5.1E-32 1.7E-36 301.0 30.4 351 78-455 499-862 (939)
19 2fge_A Atprep2;, zinc metallop 100.0 4.6E-29 1.6E-33 278.7 31.7 347 78-455 553-933 (995)
20 3cww_A Insulysin, insulin-degr 100.0 1E-28 3.4E-33 276.0 31.1 350 79-454 519-886 (990)
21 3s5m_A Falcilysin; M16 metallo 99.9 6.1E-24 2.1E-28 236.5 20.8 342 85-455 724-1129(1193)
22 3ih6_A Putative zinc protease; 99.8 2.6E-17 8.8E-22 148.4 17.0 132 309-456 23-155 (197)
23 3ih6_A Putative zinc protease; 98.2 2.1E-05 7.1E-10 69.8 13.8 161 97-265 22-192 (197)
24 3hdi_A Processing protease; CA 97.8 9.3E-05 3.2E-09 73.7 12.0 164 95-267 230-405 (421)
25 3cx5_A Cytochrome B-C1 complex 97.8 0.0004 1.4E-08 69.1 16.5 175 89-267 222-414 (431)
26 3eoq_A Putative zinc protease; 97.8 0.00012 3.9E-09 72.7 12.1 159 98-265 234-402 (406)
27 1hr6_B Beta-MPP, mitochondrial 97.8 0.0011 3.9E-08 66.2 19.1 167 95-265 242-426 (443)
28 3amj_B Zinc peptidase inactive 97.7 0.00082 2.8E-08 66.7 17.1 164 96-265 239-412 (424)
29 1pp9_A Ubiquinol-cytochrome C 97.7 0.00095 3.3E-08 66.9 16.1 168 95-267 246-429 (446)
30 3gwb_A Peptidase M16 inactive 97.6 0.00017 5.8E-09 72.0 9.3 163 96-265 246-419 (434)
31 1hr6_A Alpha-MPP, mitochondria 97.6 0.0025 8.5E-08 64.5 18.0 167 96-266 240-437 (475)
32 1pp9_B Ubiquinol-cytochrome C 97.4 0.0039 1.3E-07 62.1 16.9 165 96-265 249-428 (439)
33 3ami_A Zinc peptidase; alpha/b 97.2 0.0011 3.7E-08 66.5 9.6 163 99-267 244-423 (445)
34 3d3y_A Uncharacterized protein 96.9 0.0049 1.7E-07 61.0 11.2 162 95-265 250-420 (425)
35 3go9_A Insulinase family prote 96.4 0.038 1.3E-06 56.1 14.2 162 94-265 261-445 (492)
36 3cx5_B Cytochrome B-C1 complex 93.0 2.5 8.6E-05 40.0 15.5 122 309-451 11-134 (352)
37 1g6u_A Domain swapped dimer; d 37.6 45 0.0015 20.2 3.6 23 401-424 3-25 (48)
38 2fcw_A Alpha-2-macroglobulin r 22.2 71 0.0024 24.4 3.2 23 407-429 12-34 (109)
39 1l7b_A DNA ligase; BRCT, autos 21.0 1.4E+02 0.0049 21.9 4.8 64 128-196 14-78 (92)
No 1
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=4.3e-58 Score=473.32 Aligned_cols=379 Identities=36% Similarity=0.567 Sum_probs=349.1
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeeec
Q 012445 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (463)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (463)
+.++.++|+||++|++.+.+.+.+++++++++|+++|++...|++||++||+|+||.+++..++.+.++.+|++++++++
T Consensus 4 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~ 83 (475)
T 1hr6_A 4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS 83 (475)
T ss_dssp TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 57899999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 012445 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 235 (463)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~ 235 (463)
.++++|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|+++..++|..++.+.++..+| ++|++++..|+.
T Consensus 84 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~ 163 (475)
T 1hr6_A 84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR 163 (475)
T ss_dssp SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 9999999999999999999999999999999999999999999999999889999999999999999 999999999999
Q ss_pred HhhccCCHHHHHHHHHhhccCCCeEEEEeCCCHHHHHHHHHhhhCCCCCCCCC-CCCCCCCCCCceEEecC----CCCCc
Q 012445 236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR-EEPKSVYTGGDYRCQAD----SGDQL 310 (463)
Q Consensus 236 ~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G~~~~~l~~l~~~~~~~lp~~~~~-~~~~~~~~~~~~~~~~~----~~~~~ 310 (463)
+.|++++.++|++||+++|.|++|+++++|+++++++++++++|+.||....+ ..+.+.+.++..++... .+.++
T Consensus 164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (475)
T 1hr6_A 164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL 243 (475)
T ss_dssp GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCC
T ss_pred HHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccc
Confidence 99999999999999999999999999999999999999999999999865443 22233444544444421 23378
Q ss_pred eEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEEEEE
Q 012445 311 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 390 (463)
Q Consensus 311 ~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~~~ 390 (463)
+++.++|++++ .++++.+++.|++.||||+++||+|||||||+++||++||++.|++|+++++...+.+.|.|.|++.
T Consensus 244 ~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~ 321 (475)
T 1hr6_A 244 FHIQIGFEGLP--IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLS 321 (475)
T ss_dssp EEEEEEEECCC--TTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEE
T ss_pred eEEEEEEecCC--CCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEE
Confidence 99999999875 5778999999999999999999999999999999999999999999999999888888899999999
Q ss_pred eCcccHHHHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCccCC
Q 012445 391 TGSDFVSKAIDLAARELISVAT---PGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERYG 458 (463)
Q Consensus 391 ~~~~~~~~~i~~~~~~l~~l~~---~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~~~~ 458 (463)
++|+++.++++.+.+++.++.+ .| +|++||+++|+.++.++.+..++...+++.++++++.+|...+
T Consensus 322 ~~~~~~~~~~~~~~~~l~~l~~~~~~~-~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 391 (475)
T 1hr6_A 322 CIPQAAPQAVEVIAQQMYNTFANKDLR-LTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIP 391 (475)
T ss_dssp ECGGGHHHHHHHHHHHHHTTTTCTTSC-CCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCC
T ss_pred eCHHHHHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999987 66 9999999999999999999999999999999999888887654
No 2
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=4.4e-54 Score=434.45 Aligned_cols=364 Identities=20% Similarity=0.250 Sum_probs=331.9
Q ss_pred eEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeeecc
Q 012445 79 TKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (463)
Q Consensus 79 ~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (463)
++.++|+||++|++.+.+ .+.+++.+++++|+.+|++...|++|+++||+|+||.+++..++.+.++.+|+.++++++.
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE 81 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS
T ss_pred ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC
Confidence 478999999999976665 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChH
Q 012445 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPES 236 (463)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~ 236 (463)
++++|++++++++++.+|+++.+++ +|.|++++|+++|+.+.+|++...++|...+.+.++..+| +||++++..|+.+
T Consensus 82 d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 160 (406)
T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRE 160 (406)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHH
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999 9999999999999
Q ss_pred hhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCCCC-CCCCCceEEecCCCCCceEEE
Q 012445 237 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKS-VYTGGDYRCQADSGDQLTHFV 314 (463)
Q Consensus 237 ~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~ 314 (463)
+|++++.++|++||+++|.|+||+++++| +++++++++++++|++||..+.+....+ .+.++...+..+. .+++++.
T Consensus 161 ~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~q~~~~ 239 (406)
T 3eoq_A 161 SITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYEK-ARALYLV 239 (406)
T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEEECTT-CSSEEEE
T ss_pred HHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEecCC-ccceEEE
Confidence 99999999999999999999999999999 9999999999999999986543322111 2223333333332 2689999
Q ss_pred EEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEEEEEeCcc
Q 012445 315 LAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSD 394 (463)
Q Consensus 315 l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~~~~~~~ 394 (463)
++|++|. .++++.+++.|++.+|||+ ++|+||++||+ .|++|+++++...+.+.|.|.+++.++|+
T Consensus 240 ~~~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lre-~gl~y~~~s~~~~~~~~g~~~i~~~~~~~ 305 (406)
T 3eoq_A 240 ALFPGVA--YQEEARFPGQVLAHLLGEE-----------GSGRLHFALVD-KGLAEVASFGLEEADRAGTFHAYVQADPA 305 (406)
T ss_dssp EEEECCC--TTCTTHHHHHHHHHHHHCT-----------TTSHHHHHTTT-TTSEEEEEEEEEECSSCEEEEEEEEECGG
T ss_pred EEecCCC--CCCchHHHHHHHHHHhCCC-----------cchHHHHHHHH-cCCeeEEEEEecccCCceEEEEEEEeCcc
Confidence 9999986 6788999999999999976 45999999999 89999999999888889999999999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCccCCC
Q 012445 395 FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERYGW 459 (463)
Q Consensus 395 ~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~~~~~ 459 (463)
+..++++.+.+++++++++| +|++||+++|+.++.++..+++++..++..++++++..|....+
T Consensus 306 ~~~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 369 (406)
T 3eoq_A 306 RKGEVLAVLQEELDRLGREG-VGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSL 369 (406)
T ss_dssp GHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCH
T ss_pred hHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCH
Confidence 99999999999999998888 99999999999999999999999999999999999977766543
No 3
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=9.1e-53 Score=426.70 Aligned_cols=363 Identities=26% Similarity=0.402 Sum_probs=333.0
Q ss_pred eEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeeecc
Q 012445 79 TKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (463)
Q Consensus 79 ~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (463)
++.++|+||++|++.+.+ .+.+++.+++++|+++|++...|++|+++||+|+||.+++..++.+.++.+|++++++++.
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSK 81 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECS
T ss_pred ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeecc
Confidence 578999999999976655 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChH
Q 012445 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPES 236 (463)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~ 236 (463)
+.++|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|++...++|...+.+.+...+| ++|++++..|+.+
T Consensus 82 d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 161 (421)
T 3hdi_A 82 EYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVE 161 (421)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHH
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCC-CCCCCCCceEEecCCCCCceEEE
Q 012445 237 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP-KSVYTGGDYRCQADSGDQLTHFV 314 (463)
Q Consensus 237 ~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~ 314 (463)
.|++++.++|++||+++|.|++|+++++| ++ ++++++++++|+.||....+... .+.+.+.......+. +++++.
T Consensus 162 ~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~q~~v~ 238 (421)
T 3hdi_A 162 TLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQGEKPMFLPNRIVRKKET--EQAHLC 238 (421)
T ss_dssp HHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCCCCCCCCCCCEEEEECCC--SEEEEE
T ss_pred HHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEecCCC--CceEEE
Confidence 99999999999999999999999999999 99 99999999999999876543322 223333333334444 789999
Q ss_pred EEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEEEEEeCcc
Q 012445 315 LAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSD 394 (463)
Q Consensus 315 l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~~~~~~~ 394 (463)
++|+.+. .++++.+++.|++.+|||+ ++++||++||++.|++|+++++...+.+.|.|.+++.++|+
T Consensus 239 ~~~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~ 305 (421)
T 3hdi_A 239 LGYPGLP--IGDKDVYALVLLNNVLGGS-----------MSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHD 305 (421)
T ss_dssp EEEECCC--TTCTTHHHHHHHHHHHTSS-----------SSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGG
T ss_pred EEEecCC--CCCchHHHHHHHHHHhCCC-----------cccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHH
Confidence 9999986 6789999999999999975 55999999999999999999988888889999999999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCccCC
Q 012445 395 FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERYG 458 (463)
Q Consensus 395 ~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~~~~ 458 (463)
+..++++.+.++++++++.| ++++||+++|+.+++++...++++..++..++++.+..|...+
T Consensus 306 ~~~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 368 (421)
T 3hdi_A 306 QLDDLVYSIQETTSALAEKG-LTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRS 368 (421)
T ss_dssp GHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999888 9999999999999999999999999999999998887776543
No 4
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=3.3e-52 Score=425.32 Aligned_cols=377 Identities=28% Similarity=0.436 Sum_probs=339.5
Q ss_pred CCceEEEEcCCCcEEEEecCCCC-eEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeee
Q 012445 76 PGKTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (463)
Q Consensus 76 ~~~~~~~~L~NG~~v~~~~~~~~-~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (463)
.+.++.++|+||++|++.+++.+ .+++.+++++|+..|++...|++|+++||+|+||++++..++.+.++.+|++++++
T Consensus 4 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~ 83 (443)
T 1hr6_B 4 IPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAY 83 (443)
T ss_dssp -CCCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEE
T ss_pred CCCceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEEE
Confidence 46789999999999998777755 99999999999999999999999999999999999999999999999999999999
Q ss_pred eccceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 012445 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLA 233 (463)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~ 233 (463)
++.+++.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.++++...++|...+.+.++..+| ++|++++..|
T Consensus 84 t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 163 (443)
T 1hr6_B 84 TSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILG 163 (443)
T ss_dssp ECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSC
T ss_pred ECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999899
Q ss_pred ChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCC------CCCCCCCceEEecCC
Q 012445 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP------KSVYTGGDYRCQADS 306 (463)
Q Consensus 234 ~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~~------~~~~~~~~~~~~~~~ 306 (463)
+.+.|++++.++|++||+++|.|++|+++++| +++++++++++++|+.||....+... .+.+.++...+..+
T Consensus 164 ~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 242 (443)
T 1hr6_B 164 PIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKEN- 242 (443)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCCCEEEEEECT-
T ss_pred CHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCCeEEeccC-
Confidence 99999999999999999999999999999999 99999999999999999865433211 22333333333222
Q ss_pred CCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEE
Q 012445 307 GDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 386 (463)
Q Consensus 307 ~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~ 386 (463)
+.+++++.++|+.++ +++++.+++.|++.+||++. ...|+|+|+.++||++||++.|++|+++++...+.+.|.|.
T Consensus 243 ~~~~~~v~~~~~~~~--~~~~~~~~l~vl~~iLg~~~--r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~ 318 (443)
T 1hr6_B 243 TLPTTHIAIALEGVS--WSAPDYFVALATQAIVGNWD--RAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWG 318 (443)
T ss_dssp TCSEEEEEEEEECCC--TTCTTHHHHHHHHHHHCEEE--TTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEE
T ss_pred CccceEEEEEEecCC--CCCccHHHHHHHHHHhCCCc--ccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEE
Confidence 237899999999986 58899999999999998743 23457888999999999999999999999888777889999
Q ss_pred EEEEeC--cccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCccCC
Q 012445 387 IQGTTG--SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERYG 458 (463)
Q Consensus 387 i~~~~~--~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~~~~ 458 (463)
+++.++ |++..++++.+.++++++.+.| ++++||+++|+.++.++....+++..+++.++++++.+|...+
T Consensus 319 i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 391 (443)
T 1hr6_B 319 MYIVTDSNEHNVRLIVNEILKEWKRIKSGK-ISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLS 391 (443)
T ss_dssp EEEEEETTTCCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCC
T ss_pred EEEEecCChhHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCC
Confidence 999999 9999999999999999999877 9999999999999999999999999999999998877887543
No 5
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=3.4e-52 Score=425.82 Aligned_cols=374 Identities=29% Similarity=0.483 Sum_probs=338.2
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeeec
Q 012445 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (463)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (463)
+.++..+|+||++|++.+.+.+.+++.+++++|+..|++...|++|+++||+|+||.+++..++.+.++.+|++++++++
T Consensus 12 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~ 91 (446)
T 1pp9_A 12 PETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYST 91 (446)
T ss_dssp CCCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEEC
T ss_pred cCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 57789999999999987777789999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 012445 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 235 (463)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~ 235 (463)
.+++.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|++...++|...+.+.++..+| ++|++++..|+.
T Consensus 92 ~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 171 (446)
T 1pp9_A 92 REHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPS 171 (446)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCH
T ss_pred CCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCC--C--CCCCCCCceEEecCCCCCc
Q 012445 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--P--KSVYTGGDYRCQADSGDQL 310 (463)
Q Consensus 236 ~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~--~--~~~~~~~~~~~~~~~~~~~ 310 (463)
+.|++++.++|++||+++|.|+||+++++| +++++++++++++|+.||....+.. . .+.+.++...+..+ ..++
T Consensus 172 ~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (446)
T 1pp9_A 172 ENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHRED-GLPL 250 (446)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCCCCCCCEEEEEEET-TSSS
T ss_pred HHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccccCCCCCCCCceEEEecC-Cccc
Confidence 999999999999999999999999999999 9999999999999999986543321 1 22333434333322 2278
Q ss_pred eEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEEEEE
Q 012445 311 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 390 (463)
Q Consensus 311 ~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~~~ 390 (463)
+++.++|+.++ .++++..++.|++.+|||+.+ +.| +|+|++++||++||++ |++|+++++...+.+.|.|.+++.
T Consensus 251 ~~v~~~~~~~~--~~~~d~~al~vl~~iLg~~~~-~~~-~g~~~~srL~~~lr~~-glay~~~s~~~~~~~~g~~~i~~~ 325 (446)
T 1pp9_A 251 AHVAIAVEGPG--WAHPDNVALQVANAIIGHYDC-TYG-GGAHLSSPLASIAATN-KLCQSFQTFNICYADTGLLGAHFV 325 (446)
T ss_dssp EEEEEEEEECC--TTCTHHHHHHHHHHHHCEEET-TCS-CGGGCSSHHHHHHHHH-TCCSEEEEEEEECSSCEEEEEEEE
T ss_pred eEEEEEEecCC--CCCccHHHHHHHHHHhCCCcc-cCC-CCCCCCCHHHHHHHhc-CCeEEEEEecccCCCCeEEEEEEE
Confidence 99999999986 578899999999999987654 444 6889999999999965 899999998877778899999999
Q ss_pred eCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCccCC
Q 012445 391 TGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERYG 458 (463)
Q Consensus 391 ~~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~~~~ 458 (463)
++|++..++++.+.++++++.+ | ++++||+++|+.++.++....+++..+++.++++++.+|...+
T Consensus 326 ~~~~~~~~~~~~i~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 391 (446)
T 1pp9_A 326 CDHMSIDDMMFVLQGQWMRLCT-S-ATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIP 391 (446)
T ss_dssp ECTTSHHHHHHHHHHHHHHHHH-H-CCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCC
T ss_pred ECHHHHHHHHHHHHHHHHHHhc-c-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999987 7 9999999999999999999999999999999999887887654
No 6
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=5.2e-51 Score=415.65 Aligned_cols=374 Identities=30% Similarity=0.499 Sum_probs=339.9
Q ss_pred CCCceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeee
Q 012445 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (463)
Q Consensus 75 ~~~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (463)
..++++.++|+||++|++.+...+.+++.+++++|+..|++...|++|+++||+|+|+++++..++.+.++.+|++++++
T Consensus 20 ~~~~~~~~~L~nGl~v~~~~~~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~ 99 (439)
T 1pp9_B 20 HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVT 99 (439)
T ss_dssp -CCCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEE
T ss_pred cCCCceEEECCCCcEEEEEeCCCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEE
Confidence 45788999999999999755577899999999999999999999999999999999999999999999999999999999
Q ss_pred eccceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCC
Q 012445 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAP 234 (463)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~ 234 (463)
++.+.+.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.++++...++|..++.+.++..+|.+|++++..|+
T Consensus 100 t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~ 179 (439)
T 1pp9_B 100 STRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCP 179 (439)
T ss_dssp ECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCSSCC
T ss_pred ecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999988999999999999998877889998999
Q ss_pred hHhhccCCHHHHHHHHHhhccCCCeEEEEeCCCHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCceEEecCCCCCceEEE
Q 012445 235 ESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFV 314 (463)
Q Consensus 235 ~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G~~~~~l~~l~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 314 (463)
.+.|++++.++|++||+++|.+++++++++|-++++++++++++|+ ||....+....+.+.++..++..+. +++++.
T Consensus 180 ~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~ 256 (439)
T 1pp9_B 180 DYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN-IRGGLGLSGAKAKYHGGEIREQNGD--SLVHAA 256 (439)
T ss_dssp GGGTTTCCHHHHHHHHHHHCSGGGEEEEEESSCHHHHHHHHHHHCC-CCCCC-CCCCCCCBCCEEEEEECCC--SEEEEE
T ss_pred HHHHhhcCHHHHHHHHHHhCCCCceEEEEeCCCHHHHHHHHHHHhC-CCCCCCCCCCCCCCcCCeEEecCCc--cceEEE
Confidence 9999999999999999999999999999999889999999999998 9865433222233444444444444 789999
Q ss_pred EEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEEEEEeCcc
Q 012445 315 LAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSD 394 (463)
Q Consensus 315 l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~~~~~~~ 394 (463)
++|+.|+ .++++.+++.+++.+|+++++|++|| ||.++||++||++.|++|+++++...+.+.|.|.+++.++|+
T Consensus 257 ~~~~~~~--~~~~~~~~~~ll~~iLg~~~~~~~~~---g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~ 331 (439)
T 1pp9_B 257 LVAESAA--IGSAEANAFSVLQHVLGAGPHVKRGS---NATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAA 331 (439)
T ss_dssp EEEECCC--TTSHHHHHHHHHHHHHCCSCSBTTCC---CTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEGG
T ss_pred EEecCCC--CCchHHHHHHHHHHHhCCCcccCCCC---CccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEeCHH
Confidence 9999986 57899999999999999999999888 788999999999999999999988777788999999999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCccC
Q 012445 395 FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERY 457 (463)
Q Consensus 395 ~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~~~ 457 (463)
++.++++.+.++++++++.| ++++||+++|+.++.++....+++..+++.++++++..|...
T Consensus 332 ~~~~~~~~~~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (439)
T 1pp9_B 332 SAGDVIKAAYNQVKTIAQGN-LSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYT 393 (439)
T ss_dssp GHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999877 999999999999999999999999999999999888767554
No 7
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=6.5e-51 Score=416.20 Aligned_cols=364 Identities=21% Similarity=0.298 Sum_probs=325.8
Q ss_pred CceEEEEcCCCcEEEEecC-CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeee
Q 012445 77 GKTKISTLPNGVKIASETS-VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 155 (463)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~-~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 155 (463)
++++.++|+||++|++.+. ..+.+.+.+++++|+..|++...|++|+++||+|+||++++..++.+.++.+|+.+++++
T Consensus 5 ~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t 84 (445)
T 3ami_A 5 ASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFT 84 (445)
T ss_dssp GGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEE
T ss_pred cCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCcccccc
Confidence 5789999999999996544 467999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHH-hhcCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 012445 156 SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEIS-EVSNNPQSLLLEAIHSAGY-SGALANPLLA 233 (463)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~-~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~ 233 (463)
+.+.++|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|++ ...++|...+.+.++..+| ++|++++..|
T Consensus 85 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G 164 (445)
T 3ami_A 85 TRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIG 164 (445)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTC
T ss_pred CCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999 6788999999999999999 9999999999
Q ss_pred ChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCC--C-CCCCCCc-eEEecCCCC
Q 012445 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--K-SVYTGGD-YRCQADSGD 308 (463)
Q Consensus 234 ~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~~--~-~~~~~~~-~~~~~~~~~ 308 (463)
+.++|++++.++|++||+++|.|++|+++|+| +++++++++++++|+.||....+... . +...+.. ..+..+.
T Consensus 165 ~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 242 (445)
T 3ami_A 165 WMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPA-- 242 (445)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCCCCCCCSCEEEEEEEEC--
T ss_pred CHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCceEEEEecCC--
Confidence 99999999999999999999999999999999 99999999999999999865433211 1 2222222 2333344
Q ss_pred CceEEEEEeecCCC--CCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecc-cCC-cce
Q 012445 309 QLTHFVLAFELPGG--WHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNI-YNH-SGM 384 (463)
Q Consensus 309 ~~~~v~l~f~~~~~--~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~-~~~-~~~ 384 (463)
.++++.++|++|.. +.++++.+++.+++.+|+|+ +++||+++||++.|++|+++++... ..+ .+.
T Consensus 243 ~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~-----------~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~ 311 (445)
T 3ami_A 243 ELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGY-----------DGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGL 311 (445)
T ss_dssp SSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSS-----------TTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEE
T ss_pred CccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCC-----------cchHHHHHHhhcCCcEEEEEeeccccccCCCCe
Confidence 78899999999852 33378999999999999975 4599999999999999999998774 456 899
Q ss_pred EEEEEEeCccc-HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcC
Q 012445 385 FGIQGTTGSDF-VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYG 454 (463)
Q Consensus 385 ~~i~~~~~~~~-~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g 454 (463)
|.|++.+.|+. .+++++.+.++|+++.+.| ++++||+++|+.++.++..+.+++..|++.++++++..+
T Consensus 312 ~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (445)
T 3ami_A 312 FILEGVPSKGVTIAQLETDLRAQVRDIAAKG-VTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGL 381 (445)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCC
Confidence 99999999884 9999999999999999888 999999999999999999999999999999999887543
No 8
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=1.4e-49 Score=404.42 Aligned_cols=363 Identities=17% Similarity=0.185 Sum_probs=327.8
Q ss_pred CCceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeee
Q 012445 76 PGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (463)
Q Consensus 76 ~~~~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (463)
.++++.++|+||++|++.+.+ .+.+++.+++++|+..+ +...|++|+++||+|+|+++++..++.+.++.+|++++++
T Consensus 11 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~ 89 (434)
T 3gwb_A 11 NLNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNG 89 (434)
T ss_dssp -CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEE
T ss_pred CCCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEee
Confidence 367899999999999976555 58999999999999999 8899999999999999999999999999999999999999
Q ss_pred eccceeEEEEEccCCC--HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCC
Q 012445 155 ASREQMGYSFDALKTY--VPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 231 (463)
Q Consensus 155 ~~~~~~~~~~~~~~~~--l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~ 231 (463)
++.+.+.|++++++++ ++.+|+++.+++.+|.|++++|+++|+.+..++++..++|...+.+.++..+| ++|++++.
T Consensus 90 t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 169 (434)
T 3gwb_A 90 AYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHAS 169 (434)
T ss_dssp ECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCT
T ss_pred ecCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 9999999999999998 99999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCCC--CCCCCCceEEecCCCC
Q 012445 232 LAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVYTGGDYRCQADSGD 308 (463)
Q Consensus 232 ~~~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~~~--~~~~~~~~~~~~~~~~ 308 (463)
.|+.+.|++++.++|++||+++|.+++++++++| ++++++.++++++|+.||..+.+..+. ..+.++...+..+.
T Consensus 170 ~G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 247 (434)
T 3gwb_A 170 DGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAEPKASIGHIEFPS-- 247 (434)
T ss_dssp TCCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCCCCEEEEEECCS--
T ss_pred CCCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEeCCC--
Confidence 9999999999999999999999999999999999 999999999999999998764333221 12233344455555
Q ss_pred CceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEEE
Q 012445 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 388 (463)
Q Consensus 309 ~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~ 388 (463)
.++++.++|..+. .++++.+++.+++.+|||+ ||+++||++||++.|++|+++++...+.+.+.|.++
T Consensus 248 ~~~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~----------~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~ 315 (434)
T 3gwb_A 248 SQTSLMLAQLGID--RDDPDYAAVSLGNQILGGG----------GFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMIN 315 (434)
T ss_dssp SEEEEEEEEECCB--TTCTTHHHHHHHHHHHHSS----------SSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEE
T ss_pred CceeEEecCcCCC--CCCcchHHHHHHHHHhCCC----------cccchhHHHHHhhcCCcceeeeecccCCCceeEEEE
Confidence 7899999999886 6789999999999999964 366999999999999999999998888888999999
Q ss_pred EEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCc
Q 012445 389 GTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE 455 (463)
Q Consensus 389 ~~~~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~ 455 (463)
++++|+++.++++.+.++++++.+.| ++++||+++|+.++.++....+++..|+..++++.+ +|.
T Consensus 316 ~~~~~~~~~~~~~~i~~~l~~l~~~~-~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 380 (434)
T 3gwb_A 316 LQTRAEMSEGTLKLVQDVFAEYLKNG-PTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGF-YNL 380 (434)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHH-TTC
T ss_pred EecchhhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHH-cCC
Confidence 99999999999999999999998877 999999999999999999999999999999998765 554
No 9
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=1.2e-48 Score=396.62 Aligned_cols=362 Identities=18% Similarity=0.257 Sum_probs=325.8
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCC----CCCHHHHHHHHHHcCCee
Q 012445 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTR----NRSHLRIVREVEAIGGNV 151 (463)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~----~~s~~~l~~~l~~~g~~~ 151 (463)
++++.++|+||++|++.+.+ .+.+.+.+++++|+..|+++..|++|+++||+|+||+ +++..++.+.++.+|+++
T Consensus 2 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~ 81 (424)
T 3amj_B 2 IKIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARL 81 (424)
T ss_dssp CCCEEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEE
T ss_pred CccEEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEE
Confidence 46789999999999976555 6799999999999999999999999999999999999 999999999999999999
Q ss_pred eeeeccceeEEEEEccCCCH--HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCC
Q 012445 152 QASASREQMGYSFDALKTYV--PEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALA 228 (463)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l--~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~ 228 (463)
+++++.+.+.|+++++++++ +.+|+++.+++.+|.|++++|+++|+.+.++++...++|...+.+.+...+| ++|++
T Consensus 82 ~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~ 161 (424)
T 3amj_B 82 GGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYG 161 (424)
T ss_dssp EEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGG
T ss_pred EeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999998 9999999999999999999999999999999999889999999999999999 89999
Q ss_pred CCCCCChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCC-CCC-CCCCCceEEecC
Q 012445 229 NPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-PKS-VYTGGDYRCQAD 305 (463)
Q Consensus 229 ~~~~~~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~-~~~-~~~~~~~~~~~~ 305 (463)
.+. +.+.|++++.++|++||+++|.|++|+++++| +++++++++++++|+.||....+.. +.+ ...+....+..+
T Consensus 162 ~~~--~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (424)
T 3amj_B 162 HVS--SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPAMPRATVERIANP 239 (424)
T ss_dssp CCC--CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCCCCCCCCCCEEEEEECS
T ss_pred CCC--CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEeeCC
Confidence 886 88999999999999999999999999999999 9999999999999999986543322 111 222223334444
Q ss_pred CCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceE
Q 012445 306 SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 385 (463)
Q Consensus 306 ~~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~ 385 (463)
. +++++.++|+.+. .++++.+++.+++.+||++ |++++||++||++.|++|+++++...+.+.+.|
T Consensus 240 ~--~~~~v~~~~~~~~--~~~~~~~~~~vl~~iLg~~----------~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~ 305 (424)
T 3amj_B 240 A--TQAHIAIGMPTLK--RGDPDFFPLVVGNYALGGG----------GFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLF 305 (424)
T ss_dssp S--SEEEEEEEEEEEB--TTCTTHHHHHHHHHHHTTS----------GGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEE
T ss_pred C--CccEEEeeccCCC--CCCcchHHHHHHHHHhCCC----------CccchhHHHHHHhCCeEEEeeeeeccCCCceeE
Confidence 4 7899999999886 5788999999999999864 266999999999999999999998887888999
Q ss_pred EEEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCcc
Q 012445 386 GIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 456 (463)
Q Consensus 386 ~i~~~~~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~~ 456 (463)
.++++++|++..++++.+.++++++++.| ++++||+++|+.++.++....+++..|+..++...+ +|..
T Consensus 306 ~i~~~~~~~~~~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 374 (424)
T 3amj_B 306 QIGFETRAEKADEAVQVANDTLDAFLREG-PTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGY-YGLP 374 (424)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHH-TTCC
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHH-cCCC
Confidence 99999999999999999999999998877 999999999999999999999999999999986554 6654
No 10
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=3.4e-48 Score=393.80 Aligned_cols=363 Identities=18% Similarity=0.294 Sum_probs=322.3
Q ss_pred EEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeeeccc
Q 012445 80 KISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASRE 158 (463)
Q Consensus 80 ~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~ 158 (463)
+.++|+||++|++.+.+ .+.+.+.+++++|+..|+++..|++|+++||+|+|+.+ +.++..|++++++++.+
T Consensus 2 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~-------~~~~~~G~~~na~t~~~ 74 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS-------AVAAKEGLALSSNISRD 74 (431)
T ss_dssp CCEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH-------HHHHHTTCEEEEEECSS
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc-------ccHHHcCCeeeeeecCC
Confidence 46789999999976555 57999999999999999999999999999999998643 34788999999999999
Q ss_pred eeEEEEEccCCCHHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHhc-CCCCCCCCCC
Q 012445 159 QMGYSFDALKTYVPEMVELLIDCVRNPV---FLDWEVNEQLTKVKSEISEVSNNP-QSLLLEAIHSAGY-SGALANPLLA 233 (463)
Q Consensus 159 ~~~~~~~~~~~~l~~~l~ll~~~~~~p~---~~~~~~~~~k~~~~~e~~~~~~~p-~~~~~~~l~~~~~-~~~~~~~~~~ 233 (463)
++.|++++++++++.+|+++.+++.+|. |++++|+++|+.+.++++...++| ...+.+.++..+| ++|++++..|
T Consensus 75 ~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g 154 (431)
T 3cx5_A 75 FQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRG 154 (431)
T ss_dssp CEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTC
T ss_pred eEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCC
Confidence 9999999999999999999999999999 999999999999999999888899 9999999999999 8999999899
Q ss_pred ChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCCC-CCCCCCceEEecCCCCCce
Q 012445 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK-SVYTGGDYRCQADSGDQLT 311 (463)
Q Consensus 234 ~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 311 (463)
+.+.|++++.++|++||+++|.+++|+++++| +++++++++++++|+.||....+.... +.+.++...+..+ ..+++
T Consensus 155 ~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 233 (431)
T 3cx5_A 155 TLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDD-TLPKA 233 (431)
T ss_dssp CHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCCCCCCCCCCEEEEEECT-TSSSE
T ss_pred CHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCcccCceEEEcCC-CCCce
Confidence 99999999999999999999999999999999 999999999999888998654332111 2233333333332 23789
Q ss_pred EEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCC-cccHHHHHHHhhCCCeEEEEEeecccCCcceEEEEEE
Q 012445 312 HFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKG-MYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 390 (463)
Q Consensus 312 ~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g-~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~~~ 390 (463)
++.++|+.++ .++++.+++.+++.+|+++ ++||||+| |+++|++.||+ +|++|+++++...+.+.+.|.+++.
T Consensus 234 ~v~~~~~~~~--~~~~~~~~~~vl~~iL~~~---~~~~~~~~~~~s~L~~~lRe-~gl~y~v~~~~~~~~~~g~~~i~~~ 307 (431)
T 3cx5_A 234 WISLAVEGEP--VNSPNYFVAKLAAQIFGSY---NAFEPASRLQGIKLLDNIQE-YQLCDNFNHFSLSYKDSGLWGFSTA 307 (431)
T ss_dssp EEEEEEECCC--TTCTTHHHHHHHHHHHCEE---ETTCTTGGGSSCTHHHHHHT-TTCCSEEEEEEEECSSCEEEEEEEE
T ss_pred EEEEEeecCC--CCCccHHHHHHHHHHcCCC---ccCCCCccccccHHHHHHHh-cCceeeEeEeecccCCCceEEEEEe
Confidence 9999999986 5789999999999999965 46899996 78999999997 5999999998877778899999999
Q ss_pred eCc-ccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH--hccChHHHHHHHHHHHHhcCccCC
Q 012445 391 TGS-DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM--NLESRMVVSEDIGRQVLTYGERYG 458 (463)
Q Consensus 391 ~~~-~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~--~~~s~~~~~~~l~~~~l~~g~~~~ 458 (463)
++| ++..++++.+.++++++.+ | ++++||+++|+.++.++.. ..+++..+++.++++++.+|....
T Consensus 308 ~~~~~~~~~~~~~~~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 376 (431)
T 3cx5_A 308 TRNVTMIDDLIHFTLKQWNRLTI-S-VTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLS 376 (431)
T ss_dssp ESCTTCHHHHHHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCC
T ss_pred eCchhhHHHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCC
Confidence 999 9999999999999999988 7 9999999999999999999 999999999999998877786543
No 11
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=2.2e-44 Score=364.92 Aligned_cols=356 Identities=14% Similarity=0.146 Sum_probs=311.2
Q ss_pred EEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCC-CHHHHHHHHHHc-CCeeeeeeccc
Q 012445 82 STLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR-SHLRIVREVEAI-GGNVQASASRE 158 (463)
Q Consensus 82 ~~L~NG~~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~-s~~~l~~~l~~~-g~~~~~~~~~~ 158 (463)
++|+||++|++.+.+ .+.+.+.+++++|+..++ .|++|+++||+++|++++ +..++.+.++.+ |++++++++.+
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 889999999976664 689999999999997654 699999999999999998 889999999998 99999999988
Q ss_pred e----eEEEEEccCC-------CHHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 012445 159 Q----MGYSFDALKT-------YVPEMVELLIDCVRNPV-----FLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAG 222 (463)
Q Consensus 159 ~----~~~~~~~~~~-------~l~~~l~ll~~~~~~p~-----~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~ 222 (463)
. +.|+++++++ +++.+|+++.+++.+|. |++++|+++|+.+.+++++...+|...+.+.++..+
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~ 162 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVY 162 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Confidence 8 5899999987 69999999999999999 999999999999999999988999999999999999
Q ss_pred c--CCCCCCCCCCChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCC-C-CCCCC
Q 012445 223 Y--SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP-K-SVYTG 297 (463)
Q Consensus 223 ~--~~~~~~~~~~~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~~-~-~~~~~ 297 (463)
| +||++++..|+.+.|++++.++|++||+++|.+++++++++| ++++++++++ ++|+ ||....+... . ..+.+
T Consensus 163 ~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 240 (425)
T 3d3y_A 163 FNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKAAIFYNQPIR 240 (425)
T ss_dssp TTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCCCSCCCCCCC
T ss_pred ccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCccccccccccccccCC
Confidence 9 689999989999999999999999999999999999999999 9999999999 9999 9865432211 1 11112
Q ss_pred C-ceEEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEee
Q 012445 298 G-DYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFS 376 (463)
Q Consensus 298 ~-~~~~~~~~~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~ 376 (463)
. ........+.+++++.++|+.|.. .++++.+++.|++.+|||+ ++++||++||++.|++|++++..
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~vl~~iLg~~-----------~~s~L~~~lRe~~glaY~v~~~~ 308 (425)
T 3d3y_A 241 NVIEERTEREVLAQSKLNLAYNTDIY-YGDSYYFALQVFNGIFGGF-----------PHSKLFMNVREKEHLAYYASSSI 308 (425)
T ss_dssp SSCEEEEEEEECSSEEEEEEEECCCC-TTSTTHHHHHHHHHHHTTS-----------TTSHHHHHTTTTSCCCSEEEEEE
T ss_pred CcceeEEecCCccccEEEEEeecCCC-CCCchHHHHHHHHHHhCCC-----------hhhHHHHHHHHhcCeEEEEeccc
Confidence 1 222222222278999999998633 4778999999999999875 45999999999999999999876
Q ss_pred cccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCcc
Q 012445 377 NIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 456 (463)
Q Consensus 377 ~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~~ 456 (463)
.. ..|.|.|++.++|+++.++++.+.++++.+++.| ++++||+++|+.++.++....+++..|++.++.+++.+|..
T Consensus 309 ~~--~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 385 (425)
T 3d3y_A 309 DT--FRGFMTVQTGIDGKNRNQVLRLISTELENIRLGK-IRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTM 385 (425)
T ss_dssp ET--TTTEEEEEEEECGGGHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSC
T ss_pred cc--cCceEEEEEecCHhhHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCC
Confidence 64 3789999999999999999999999999999877 99999999999999999999999999999999888854654
Q ss_pred C
Q 012445 457 Y 457 (463)
Q Consensus 457 ~ 457 (463)
.
T Consensus 386 ~ 386 (425)
T 3d3y_A 386 L 386 (425)
T ss_dssp C
T ss_pred C
Confidence 3
No 12
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=2.8e-44 Score=399.60 Aligned_cols=364 Identities=14% Similarity=0.143 Sum_probs=317.5
Q ss_pred CCCceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCC-HHHHHHHHHHcCCeee
Q 012445 75 EPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGNVQ 152 (463)
Q Consensus 75 ~~~~~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s-~~~l~~~l~~~g~~~~ 152 (463)
++..++..+|+||++|++.+.+ .+.+.+.+++++|+.+|++...|++|++|||+|+||.+++ ..++.+.++.+|+.+|
T Consensus 17 d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~N 96 (939)
T 1q2l_A 17 DNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHN 96 (939)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEE
T ss_pred CCcceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcce
Confidence 4456899999999999965544 6789999999999999999999999999999999999987 4799999999999999
Q ss_pred eeeccceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCC
Q 012445 153 ASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 231 (463)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~ 231 (463)
++|+.++|+|++++++++++.+|+++.+++.+|.|++++|++++..+.+|++...++|...+.+.+...+| +||++++.
T Consensus 97 A~T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 176 (939)
T 1q2l_A 97 ASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFS 176 (939)
T ss_dssp EEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCC
T ss_pred EEECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCChHhhcc----CCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCC--CCCCCCC--ceEE
Q 012445 232 LAPESAINR----LNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTGG--DYRC 302 (463)
Q Consensus 232 ~~~~~~l~~----i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~~--~~~~~~~--~~~~ 302 (463)
.|+.++|++ ++.++|++||++||.|+||+++|+| +++++++++++++|++||+...+... .+.+... ...+
T Consensus 177 ~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (939)
T 1q2l_A 177 GGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIII 256 (939)
T ss_dssp SCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSCSCCGGGSSEEE
T ss_pred CCCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCHHHcCEEE
Confidence 999999999 9999999999999999999999999 99999999999999999875433221 1222221 1233
Q ss_pred ecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEee--cccC
Q 012445 303 QADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFS--NIYN 380 (463)
Q Consensus 303 ~~~~~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~--~~~~ 380 (463)
......+++++.++|+.|.. .+..+..++.+++.+||++++ ++|+..||+ .|++|+++++. ..+.
T Consensus 257 ~~~~~~~~~~l~i~~~~~~~-~~~~~~~~~~~l~~lLg~~~~-----------s~L~~~L~~-~gl~~~~~a~~~~~~~~ 323 (939)
T 1q2l_A 257 HYVPALPRKVLRVEFRIDNN-SAKFRSKTDELITYLIGNRSP-----------GTLSDWLQK-QGLVEGISANSDPIVNG 323 (939)
T ss_dssp EECCSSCCCEEEEEEEEECC-GGGGGGCHHHHHHHHHHCCCT-----------TSHHHHHHH-TTCEEEEEEEEESSTTS
T ss_pred EEEeCCCCcEEEEEEEcCCh-HHhhhhCHHHHHHHHhcCCCC-----------CcHHHHHHH-cCCchheeeccccccCC
Confidence 33233378999999999962 233366788999999997643 899999995 69999999874 3445
Q ss_pred CcceEEEEEEeCc---ccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHh
Q 012445 381 HSGMFGIQGTTGS---DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNL-ESRMVVSEDIGRQVLT 452 (463)
Q Consensus 381 ~~~~~~i~~~~~~---~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~-~s~~~~~~~l~~~~l~ 452 (463)
+.+.|.|++.+.+ ++.+++++.+.++|+.+.+.| ++++||+++|+.+..++.... ++....++.++.+++.
T Consensus 324 ~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 398 (939)
T 1q2l_A 324 NSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKG-IDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIR 398 (939)
T ss_dssp SEEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHTT
T ss_pred CceEEEEEEEEChhhhhhHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhhc
Confidence 7799999999887 589999999999999998888 999999999999999998876 6778889999988763
No 13
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=2.4e-43 Score=364.26 Aligned_cols=351 Identities=17% Similarity=0.143 Sum_probs=291.0
Q ss_pred CceEEEEcCCCcEEEEe-cC--CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHH----HcCC
Q 012445 77 GKTKISTLPNGVKIASE-TS--VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE----AIGG 149 (463)
Q Consensus 77 ~~~~~~~L~NG~~v~~~-~~--~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~----~~g~ 149 (463)
+.++.++|+||++|++. +. +.+.+++++++++|+++|++...|++||++||+|+||++++..++.+.++ ..|+
T Consensus 24 p~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~ 103 (492)
T 3go9_A 24 PAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERP 103 (492)
T ss_dssp TTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSC
T ss_pred CCeEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCC
Confidence 57899999999999853 32 35689999999999999999999999999999999999999999988665 4789
Q ss_pred eeeeeeccceeEEEEEccC---CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CC
Q 012445 150 NVQASASREQMGYSFDALK---TYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SG 225 (463)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~---~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~ 225 (463)
.++++++.++++|++++++ ++++.+|+++.+++.+|.|++++|+++|..+.++++....+|....+ ....+ .+
T Consensus 104 ~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 180 (492)
T 3go9_A 104 LPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWW---RYRLKGSS 180 (492)
T ss_dssp CCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHH---HHHTTTST
T ss_pred CcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHH---HHHhccCC
Confidence 9999999999999999999 67999999999999999999999999998877777777677765433 23345 55
Q ss_pred CCCCCCCCChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCC--C-CCCCCCCceE
Q 012445 226 ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--P-KSVYTGGDYR 301 (463)
Q Consensus 226 ~~~~~~~~~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~--~-~~~~~~~~~~ 301 (463)
+++++..+ +.|++++.++|++||++||.|+||+++++| +++++++++++++|++||.....+. + .++..+....
T Consensus 181 ~~~~~~~~--~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (492)
T 3go9_A 181 LIGHDPGQ--PVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPLPPEPVS 258 (492)
T ss_dssp TTTCCTTC--CCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCCSSCEE
T ss_pred cccCCCch--hhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCceE
Confidence 66666532 578999999999999999999999999999 9999999999999999987643221 1 1122223333
Q ss_pred -EecCCCCCceEEEEEeecCCCCCCCcchHHH------HHHHHhhCCCCCCCCCCCCCCcccHHHHHHHh--hCCCeEEE
Q 012445 302 -CQADSGDQLTHFVLAFELPGGWHKDKDAMTL------TVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLN--EFPQVQSF 372 (463)
Q Consensus 302 -~~~~~~~~~~~v~l~f~~~~~~~~~~~~~~~------~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~--~~~~~Y~~ 372 (463)
+..+. +++++.++|..|. ..+++..++ .+++.+|+ ++|+.+||+ +.+++|++
T Consensus 259 ~~~~~~--~q~~v~l~~~~~~--~~~~d~~~l~~~~~~~v~~~iLg---------------~~L~~~lre~~~~gl~y~~ 319 (492)
T 3go9_A 259 LMNEQA--AQDTLSLMWDTPW--HPIQDSMALSRYWRSDLAREALF---------------WHIKQVLEKNNQKNLKLGF 319 (492)
T ss_dssp EEESSC--SSEEEEEEEEEEC--CCCCSHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHSCCTTCEEEE
T ss_pred EEcCCC--CCcEEEEEecCCC--CCcccHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhhcccccccc
Confidence 33444 7899999999986 456665544 89999998 799999999 88999999
Q ss_pred EEeecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcc-----ChHHHHHHHH
Q 012445 373 SAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLE-----SRMVVSEDIG 447 (463)
Q Consensus 373 ~a~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~-----s~~~~~~~l~ 447 (463)
+++.....+.+.| ++.+++++.+++++.+.++++++.+.| +|++||+++|+.+++++...++ ++..+++.+.
T Consensus 320 ~s~~~~~~~~~~~--~i~~~~~~~~~a~~~i~~el~~l~~~g-~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~ 396 (492)
T 3go9_A 320 DCRVQYQRAQCAI--HLNTPVENLTANMTFVARELAALRANG-LSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRL 396 (492)
T ss_dssp EEEEETTEEEEEE--EEEECGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHH
T ss_pred CchhhhhhcceEE--EEEcCcccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 9987766555544 556689999999999999999999888 9999999999999999988755 4677888888
Q ss_pred HHHHhcC
Q 012445 448 RQVLTYG 454 (463)
Q Consensus 448 ~~~l~~g 454 (463)
++++...
T Consensus 397 ~~~~~~~ 403 (492)
T 3go9_A 397 RSQQSGV 403 (492)
T ss_dssp HHHHHTC
T ss_pred HHHhcCC
Confidence 7777543
No 14
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=6.1e-41 Score=374.66 Aligned_cols=362 Identities=16% Similarity=0.151 Sum_probs=308.9
Q ss_pred CCCceEEEEcCCCcEEEEec-CCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCH-HHHHHHHHHcCCeee
Q 012445 75 EPGKTKISTLPNGVKIASET-SVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH-LRIVREVEAIGGNVQ 152 (463)
Q Consensus 75 ~~~~~~~~~L~NG~~v~~~~-~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~-~~l~~~l~~~g~~~~ 152 (463)
+...++..+|+||++|++.+ ...+.+.+.+++++|+..|+++..|++|++|||+|+||++++. .++.+.++.+|+.+|
T Consensus 31 d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~N 110 (990)
T 3cww_A 31 DKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSN 110 (990)
T ss_dssp CCCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEE
T ss_pred CCcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCcee
Confidence 45688999999999999654 4467999999999999999999999999999999999999986 799999999999999
Q ss_pred eeeccceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCC
Q 012445 153 ASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 231 (463)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~ 231 (463)
++|+.++|+|.+++++++++.+|+++.+++.+|.|++++|++++..+.+|++...++|...+.+.+...+| +|||+++.
T Consensus 111 A~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~ 190 (990)
T 3cww_A 111 AFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFG 190 (990)
T ss_dssp EEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCC
T ss_pred EEECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999889999999999998889 99999999
Q ss_pred CCChHhhccC-------CHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCC-C-CCCCC---C
Q 012445 232 LAPESAINRL-------NSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP-K-SVYTG---G 298 (463)
Q Consensus 232 ~~~~~~l~~i-------~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~~-~-~~~~~---~ 298 (463)
.|+.+.|..+ +.++|++||++||.|+||+++++| +++++++++++++|+.||....+... . +++.. +
T Consensus 191 ~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 270 (990)
T 3cww_A 191 TGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 270 (990)
T ss_dssp SCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSCSSCGGGSS
T ss_pred CCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCCCCCChHHcC
Confidence 9999999999 999999999999999999999999 99999999999999999876432211 1 12211 1
Q ss_pred ceEEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecc
Q 012445 299 DYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNI 378 (463)
Q Consensus 299 ~~~~~~~~~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~ 378 (463)
......+ ..+++++.++|..|.. .+..+..++.+++.+||+++ ..+ |+..||+ .|++|+++++...
T Consensus 271 ~~~~~~~-~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~lLg~~~----------~~s-l~~~Lr~-~g~~~~~~a~~~~ 336 (990)
T 3cww_A 271 QLYKIVP-IKDIRNLYVTFPIPDL-QKYYKSNPGHYLGHLIGHEG----------PGS-LLSELKS-KGWVNTLVGGQKA 336 (990)
T ss_dssp EEEEECC-SSSCCEEEEEEEECCC-GGGTTTCHHHHHHHHHTCCS----------TTC-HHHHHHH-TTSCSCEEEEEEE
T ss_pred eEEEEEE-CCCCcEEEEEEEcCCh-hhhhhhCHHHHHHHHhcCCC----------CCc-HHHHHHH-CCCcceeeecccc
Confidence 2222222 2268899999999962 23456788999999998632 125 5669996 5999999987663
Q ss_pred -cCCcceEEEEEEeCc---ccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHH
Q 012445 379 -YNHSGMFGIQGTTGS---DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN-LESRMVVSEDIGRQVL 451 (463)
Q Consensus 379 -~~~~~~~~i~~~~~~---~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~-~~s~~~~~~~l~~~~l 451 (463)
..+.+.|.|++.+.+ ++.+++++.+.++|+.+++.| +++++|+++|......+... .+++..++..++..+.
T Consensus 337 ~~~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 413 (990)
T 3cww_A 337 GARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEG-PQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILH 413 (990)
T ss_dssp EETTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTT
T ss_pred CCCCccEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHh
Confidence 456789999999765 489999999999999999888 99999999998888777654 4677788888876553
No 15
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=2.4e-40 Score=369.84 Aligned_cols=364 Identities=13% Similarity=0.087 Sum_probs=302.6
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHH-HHHHHH-cCCeeeee
Q 012445 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRI-VREVEA-IGGNVQAS 154 (463)
Q Consensus 77 ~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l-~~~l~~-~g~~~~~~ 154 (463)
..++..+|+||++|++.+.+.... ++.+|+..+++...|++|++|||+|+||.+++..++ .+.+.. .|+.+|++
T Consensus 36 ~~~~~~~l~nGl~v~~~~~~~~~~----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~ 111 (995)
T 2fge_A 36 KAILFKHKKTGCEVMSVSNEDENK----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAF 111 (995)
T ss_dssp EEEEEEETTTCCEEEEEECSCSSE----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCE
T ss_pred eEEEEEECCCCCEEEEEEcCCCcc----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceee
Confidence 456778999999999766655432 367788999999999999999999999999997774 444544 68899999
Q ss_pred eccceeEEEEEcc-CCCHHHHHHHHHHhhhCCCC--CHHHHHHH---------------HHHHHHHHHhhcCChHHHHHH
Q 012445 155 ASREQMGYSFDAL-KTYVPEMVELLIDCVRNPVF--LDWEVNEQ---------------LTKVKSEISEVSNNPQSLLLE 216 (463)
Q Consensus 155 ~~~~~~~~~~~~~-~~~l~~~l~ll~~~~~~p~~--~~~~~~~~---------------k~~~~~e~~~~~~~p~~~~~~ 216 (463)
|+.++|+|.+.+. .++++.+|+++.|++.+|.| ++++|+++ |..+.+|++...++|..++.+
T Consensus 112 T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~ 191 (995)
T 2fge_A 112 TYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGR 191 (995)
T ss_dssp ECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHH
T ss_pred ECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHH
Confidence 9999999999876 46999999999999999999 99999999 899999999999999999999
Q ss_pred HHHHHhc-CCCCCCCCCCChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCC--CCC--CCCC
Q 012445 217 AIHSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLP--SIH--PREE 290 (463)
Q Consensus 217 ~l~~~~~-~~~~~~~~~~~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp--~~~--~~~~ 290 (463)
.+...+| +|||+++..|+.+.|.+++.++|++||++||+|+||+++++| +++++++++++++|++|| ... ....
T Consensus 192 ~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~ 271 (995)
T 2fge_A 192 IAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIK 271 (995)
T ss_dssp HHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCC
T ss_pred HHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCcccC
Confidence 9999999 999999999999999999999999999999999999999999 999999999999999998 432 1111
Q ss_pred CCCCCCCCc---eEEec---CCCCCceEEEEEeecCCCCC-CCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHH
Q 012445 291 PKSVYTGGD---YRCQA---DSGDQLTHFVLAFELPGGWH-KDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVL 363 (463)
Q Consensus 291 ~~~~~~~~~---~~~~~---~~~~~~~~v~l~f~~~~~~~-~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR 363 (463)
..+++.... ..+.. +...+++++.++|..|. +. +.++..++.+|+.+|+|+ ++|+|++.||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~a~~vl~~~Lg~~-----------~~S~L~~~l~ 339 (995)
T 2fge_A 272 FQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSE-KPLDLQTQLALGFLDHLMLGT-----------PASPLRKILL 339 (995)
T ss_dssp CCCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCS-SCCCHHHHHHHHHHHHHHHSS-----------TTSHHHHHHH
T ss_pred CCCCCCCCceEEEecccCCCCCccCccEEEEEEEcCC-CcCCHHHHHHHHHHHHHHcCC-----------CCCHHHHHHH
Confidence 122333221 12221 22236899999999986 23 358899999999999865 4499999999
Q ss_pred hhCCCeEEEEEe-ecccCCcceEEEE-EEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcc--Ch
Q 012445 364 NEFPQVQSFSAF-SNIYNHSGMFGIQ-GTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLE--SR 439 (463)
Q Consensus 364 ~~~~~~Y~~~a~-~~~~~~~~~~~i~-~~~~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~--s~ 439 (463)
++ |++|+++++ +......+.|.|. ..+++++.+++++.+.++|+++.+.| ++++||+++|+.++.++..... +.
T Consensus 340 e~-gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~~~~el~~ak~~~~~~~~~~~~~~~~ 417 (995)
T 2fge_A 340 ES-GLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEELIMDTLKKLAEEG-FDNDAVEASMNTIEFSLRENNTGSFP 417 (995)
T ss_dssp HT-TSCSEECSCEEECSSSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCCCTTSC
T ss_pred hc-CCCcceeeccccccccCeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhccCCCCc
Confidence 86 999999876 5555567899985 46899999999999999999999888 9999999999999999887542 33
Q ss_pred H--HHHHHHHHHHHhcCccCC
Q 012445 440 M--VVSEDIGRQVLTYGERYG 458 (463)
Q Consensus 440 ~--~~~~~l~~~~l~~g~~~~ 458 (463)
. .++..++++++..|....
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~ 438 (995)
T 2fge_A 418 RGLSLMLQSISKWIYDMDPFE 438 (995)
T ss_dssp HHHHHHHHHHHHHTTTSCSSG
T ss_pred cHHHHHHHHHHHHhcCCChHH
Confidence 4 467788888876555443
No 16
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=3.9e-39 Score=358.16 Aligned_cols=368 Identities=14% Similarity=0.097 Sum_probs=300.7
Q ss_pred CCCceEEEEcCCCcEEEEecCCCC-eEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHH--cCCee
Q 012445 75 EPGKTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA--IGGNV 151 (463)
Q Consensus 75 ~~~~~~~~~L~NG~~v~~~~~~~~-~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~--~g~~~ 151 (463)
..+.++...|+||++|++.+.+.+ .+. ..+..|+..+++...|++|++|||+|+|+++++..++...+.. .|+.+
T Consensus 83 ~~~~~~~~~l~nGl~vl~i~~~~~~~~~--~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~l 160 (1193)
T 3s5m_A 83 KMTYTVYQHKKAKTQVISLGTNDPLDVE--QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHL 160 (1193)
T ss_dssp TEEEEEEEETTTCCEEEEEEECCTTCCC--EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEE
T ss_pred cccceEEEECCCCCEEEEEECCCCCeEE--EEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceE
Confidence 335778899999999996554433 222 2345577778999999999999999999999999999999998 88999
Q ss_pred eeeeccceeEEEEEccC-CCHHHHHHHHHHhhhCCCCCHHH--HHHH-----------------------------HHHH
Q 012445 152 QASASREQMGYSFDALK-TYVPEMVELLIDCVRNPVFLDWE--VNEQ-----------------------------LTKV 199 (463)
Q Consensus 152 ~~~~~~~~~~~~~~~~~-~~l~~~l~ll~~~~~~p~~~~~~--~~~~-----------------------------k~~~ 199 (463)
|++|+.++|+|.+++.+ ++++.+|+++.|.+.+|.|++++ |.++ |..+
T Consensus 161 NA~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV 240 (1193)
T 3s5m_A 161 NAYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIV 240 (1193)
T ss_dssp EEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHH
T ss_pred EeEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHH
Confidence 99999999999999887 89999999999999999998887 8776 5689
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHh
Q 012445 200 KSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 277 (463)
Q Consensus 200 ~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~ 277 (463)
.+|++...++|...+.+.+...+| +|||+++..|++++|.+++.++|++||++||.|+|++++++| ++++++++++++
T Consensus 241 ~~E~k~~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~ 320 (1193)
T 3s5m_A 241 YNEMKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQ 320 (1193)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999999999999999999999999999999 999999999999
Q ss_pred hhCCCCCCCCCC-----CC-CCCCCCC-ceEEec--CCCCCceEEEEEeecCCC---CCC--------------------
Q 012445 278 LLSDLPSIHPRE-----EP-KSVYTGG-DYRCQA--DSGDQLTHFVLAFELPGG---WHK-------------------- 325 (463)
Q Consensus 278 ~~~~lp~~~~~~-----~~-~~~~~~~-~~~~~~--~~~~~~~~v~l~f~~~~~---~~~-------------------- 325 (463)
+|+.||..+... .+ .++..+. ...... .....++++.++|..|+. ..+
T Consensus 321 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~ 400 (1193)
T 3s5m_A 321 YLGQLDYSKYRDDAVESVEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGS 400 (1193)
T ss_dssp HHTTCCGGGCCCCCCCCCCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CC
T ss_pred HhccCCCCCCCcccccccCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecCccccccccccccccccccccccccccc
Confidence 999998653311 11 1222222 222221 122378999999999841 012
Q ss_pred ---------CcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEE-EeecccCCcceEEEEEE-eCcc
Q 012445 326 ---------DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFS-AFSNIYNHSGMFGIQGT-TGSD 394 (463)
Q Consensus 326 ---------~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~-a~~~~~~~~~~~~i~~~-~~~~ 394 (463)
.++..++.+|+.+|+||. +||||+.||++ |++|+++ +++......+.|.|++. ++++
T Consensus 401 ~~~~~~~~~~~d~~al~vL~~iLggg~-----------sSrL~~~L~e~-gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~ 468 (1193)
T 3s5m_A 401 HSSDLSLENPTDYFVLLIINNLLIHTP-----------ESVLYKALTDC-GLGNNVIDRGLNDSLVQYIFSIGLKGIKRN 468 (1193)
T ss_dssp CCSTTCCCSHHHHHHHHHHHHHHHSST-----------TSHHHHHHHHH-CSCSEEEEEEEECSSSSCEEEEEEEEECTT
T ss_pred ccccccccCccHHHHHHHHHHHHCCCC-----------CCHHHHHHHhc-CCeeeecccccccccCCcEEEEEEecCChh
Confidence 478999999999999764 49999999985 9999998 56666667788988874 5554
Q ss_pred c--------H-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHh-ccChH--HHHHHHHHHHHhcCccC
Q 012445 395 F--------V-SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN-LESRM--VVSEDIGRQVLTYGERY 457 (463)
Q Consensus 395 ~--------~-~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~-~~s~~--~~~~~l~~~~l~~g~~~ 457 (463)
+ + +++.+.+.++|++++++| ++++||+++|+++..++... ..++. ..+..++..|+..|.+.
T Consensus 469 ~~~~~~~~~~~~~~~~~I~~~L~~l~~~g-i~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~ 542 (1193)
T 3s5m_A 469 NEKIKNFDKVHYEVEDVIMNALKKVVKEG-FNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPL 542 (1193)
T ss_dssp CTTCSCGGGHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTT
T ss_pred hccccchhhHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHH
Confidence 3 5 699999999999999998 99999999999999998874 34443 33456677777666543
No 17
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=4.9e-39 Score=317.98 Aligned_cols=311 Identities=22% Similarity=0.290 Sum_probs=263.9
Q ss_pred cEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeeeccceeEEEEEcc
Q 012445 88 VKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDAL 167 (463)
Q Consensus 88 ~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 167 (463)
+||++++.+.|.+++++++++|+++|+ ..|++|+++||+|+||++++..++.+.++.+|++++++++.++++|+++++
T Consensus 1 l~v~~~~~~~~~v~~~~~~~~Gs~~e~--~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~ 78 (352)
T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFL 78 (352)
T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGCS--STTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEE
T ss_pred CEEEEeeCCCceEEEEEEEeeeccCCC--cccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEec
Confidence 588988888999999999999999973 789999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHHHH-HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChHhhccCCHHHH
Q 012445 168 KTYVPEMVELLIDCVRNPVFLDWEVN-EQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLL 246 (463)
Q Consensus 168 ~~~l~~~l~ll~~~~~~p~~~~~~~~-~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~l 246 (463)
+++++.+|+++.+++.+|.|++++|+ ++|+.+.++++...++|...+.+.++..+|.+|++++.. .+.|++++.++|
T Consensus 79 ~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~p~~~~~~--~~~l~~it~~~l 156 (352)
T 3cx5_B 79 KDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLL--YDGVERVSLQDI 156 (352)
T ss_dssp GGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCSS--CCSSSCCCHHHH
T ss_pred hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCccc--hhhhccCCHHHH
Confidence 99999999999999999999999998 999999999999999999999999999999889998874 689999999999
Q ss_pred HHHHHhhccCCCeEEEEeCCCHHHHHHHH-HhhhCCCCCCCCCCC--CCCCCCCCceEEecCCCCCceEEEEEeecCCCC
Q 012445 247 EEFVAENYTGPRMVLAASGVEHDQLVSVA-EPLLSDLPSIHPREE--PKSVYTGGDYRCQADSGDQLTHFVLAFELPGGW 323 (463)
Q Consensus 247 ~~f~~~~~~~~~~~l~i~G~~~~~l~~l~-~~~~~~lp~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~l~f~~~~~~ 323 (463)
++||+++|.|+||+++++|++++++++++ +++|+.||....+.. ..+.+.++..++. .. .++.+.+++.
T Consensus 157 ~~f~~~~y~~~n~~l~v~G~~~~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~----- 228 (352)
T 3cx5_B 157 KDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVR-FI--GDSVAAIGIP----- 228 (352)
T ss_dssp HHHHHHHCCGGGEEEEEESSCHHHHHHHHHHSTTTTSCCCCCCCCCSCCCCCCSCEEEEE-CS--SSEEEEEEEE-----
T ss_pred HHHHHHhCCcCcEEEEEeCCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccCCeEEEe-cC--CCceEEEecC-----
Confidence 99999999999999999999999999999 899999986543221 1123334444432 22 4566655432
Q ss_pred CCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEEEEEeC-cccHHHHHHH
Q 012445 324 HKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTG-SDFVSKAIDL 402 (463)
Q Consensus 324 ~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~~~~~-~~~~~~~i~~ 402 (463)
.++++.+++.+++.+|| . +||++.|++ ++++...+.+.|.|.++++++ ++++.++
T Consensus 229 ~~~~~~~~l~vl~~iLg---------------~----~lre~~gl~--~~~~~~~~~~~g~~~i~~~~~~~~~~~~~--- 284 (352)
T 3cx5_B 229 VNKASLAQYEVLANYLT---------------S----ALSELSGLI--SSAKLDKFTDGGLFTLFVRDQDSAVVSSN--- 284 (352)
T ss_dssp ECTTTHHHHHHHHHHHH---------------S----TTSTTGGGC--SEEEEEEETTEEEEEEEEEESCHHHHHHH---
T ss_pred CCChhHHHHHHHHHHhC---------------c----chhcccCce--EEEeecCcCcceeEEEEEEeCCHHHHHHH---
Confidence 35578999999999998 3 578888876 555555567789999999997 4444444
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccCh
Q 012445 403 AARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR 439 (463)
Q Consensus 403 ~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~ 439 (463)
+.+++.+ | ++++||+++|+.++.++..++++.
T Consensus 285 i~~~l~~----~-~t~~el~~ak~~~~~~~~~~~~~~ 316 (352)
T 3cx5_B 285 IKKIVAD----L-KKGKDLSPAINYTKLKNAVQNESV 316 (352)
T ss_dssp HHHHHHH----H-HSCEECGGGHHHHHHHHHHHCCST
T ss_pred HHHHHHh----c-CCHHHHHHHHHHHHHHHHhhhhcc
Confidence 4444432 4 889999999999999999998873
No 18
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=5.1e-32 Score=300.99 Aligned_cols=351 Identities=9% Similarity=0.030 Sum_probs=281.5
Q ss_pred ceEEEEcCCCcEEEEecCC---C-CeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeee
Q 012445 78 KTKISTLPNGVKIASETSV---S-PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQA 153 (463)
Q Consensus 78 ~~~~~~L~NG~~v~~~~~~---~-~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~ 153 (463)
.++.++|+||++|+.++++ . |.+.+.+.+.+|...++++..|+++++..|+..|+.++ ....+..|.++++
T Consensus 499 ~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~-----~~~~~l~G~~~~~ 573 (939)
T 1q2l_A 499 HPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQL-----SNQASVGGISFST 573 (939)
T ss_dssp SCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHH-----HHHHHHTTEEEEE
T ss_pred CCEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHH-----hhHHHHcCcEEEE
Confidence 3467899999999987666 2 49999999999999988878899999999998775533 3445556788888
Q ss_pred eeccceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHhcCCCCCCCCC
Q 012445 154 SASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEV-SNNPQSLLLEAIHSAGYSGALANPLL 232 (463)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~-~~~p~~~~~~~l~~~~~~~~~~~~~~ 232 (463)
+. .+.+.+++++.+++++.+|+++.+.+++|.|++++|+++|++++.++++. ..+|..++.+.++..+|.+ + ++..
T Consensus 574 ~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~-~-~~~~ 650 (939)
T 1q2l_A 574 NA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVP-Y-FSRD 650 (939)
T ss_dssp EE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSS-C-CCHH
T ss_pred ee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCC-C-CCHH
Confidence 88 99999999999999999999999999999999999999999999999987 5579999999999888732 2 4545
Q ss_pred CChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHHHHhhhCCCCCCCCCCCCC--CCCCCC-ceEEecCCCC
Q 012445 233 APESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVYTGG-DYRCQADSGD 308 (463)
Q Consensus 233 ~~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l~~~~~~~lp~~~~~~~~~--~~~~~~-~~~~~~~~~~ 308 (463)
++.+.|++++.+++++||+++|.+.+++++|+| +++++++++++++++.||......... ....++ ...+......
T Consensus 651 ~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (939)
T 1q2l_A 651 ERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNS 730 (939)
T ss_dssp HHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCSCCCCCEEECCCSCEEEEEEECCSS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCCccccccceEEeCCCceEEEecCCCC
Confidence 678999999999999999999999999999999 999999999999999887543222111 111223 3233333322
Q ss_pred CceEE-EEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeeccc-CCcc-eE
Q 012445 309 QLTHF-VLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIY-NHSG-MF 385 (463)
Q Consensus 309 ~~~~v-~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~-~~~~-~~ 385 (463)
.++.+ .+.|..+. .+.++.+++.+|..++. ++||++||++.|++|+|+++.... ...| .|
T Consensus 731 ~~~~~~~~~~~~~~--~~~~~~~~~~lL~~~~~---------------s~lf~~LRek~gl~Y~v~s~~~~~~~~~g~~~ 793 (939)
T 1q2l_A 731 TDSALAAVFVPTGY--DEYTSSAYSSLLGQIVQ---------------PWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGF 793 (939)
T ss_dssp SCEEEEEEEECSSC--CHHHHHHHHHHHHHHHH---------------HHHTHHHHTSCCSSSCEEEEEEEETTEEEEEE
T ss_pred CCceeEEEEEecCC--CCHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhCceeeeeEeecCCeeEEEE
Confidence 34555 56666542 34445556666665555 999999999999999999987633 3334 35
Q ss_pred EEEE-EeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCc
Q 012445 386 GIQG-TTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE 455 (463)
Q Consensus 386 ~i~~-~~~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~ 455 (463)
.|+. .++|+++.++++.+.+++.++.+ | +|++||+++|+.++.++....++....++.++.+++..+.
T Consensus 794 ~i~s~~~~p~~~~~~i~~~~~~~~~~~~-~-~t~~el~~~k~~l~~~~~~~~~s~~~~~~~~w~~i~~~~~ 862 (939)
T 1q2l_A 794 LLQSNDKQPSFLWERYKAFFPTAEAKLR-A-MKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNM 862 (939)
T ss_dssp EEEESSSCHHHHHHHHHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTCT
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCC
Confidence 5666 57899999999999999999874 6 9999999999999999999999999999999888886653
No 19
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.97 E-value=4.6e-29 Score=278.71 Aligned_cols=347 Identities=11% Similarity=0.024 Sum_probs=268.4
Q ss_pred ceEEEEcCCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcC-CCCCCCHHHHHHHHHHcCCeeee--
Q 012445 78 KTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFR-STRNRSHLRIVREVEAIGGNVQA-- 153 (463)
Q Consensus 78 ~~~~~~L~NG~~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-gt~~~s~~~l~~~l~~~g~~~~~-- 153 (463)
+++. .+.||++|+..+++ .+.+++.+++++|+. +++..+.++++.++++. ||++++..++.+.++...|++++
T Consensus 553 ~~~~-~~~nG~~v~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~~ 629 (995)
T 2fge_A 553 PTEV-GDINGVKVLRHDLFTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYP 629 (995)
T ss_dssp CCEE-EESSSSEEEEEECCCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEEE
T ss_pred Ccee-eecCCceEEEEecCCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEeec
Confidence 3443 44899999976665 579999999999886 45688899999888775 99999999999999966665655
Q ss_pred ---eecc-----ceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHH-HHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHhc
Q 012445 154 ---SASR-----EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDW-EVNEQLTKVKSEISEVS-NNPQSLLLEAIHSAGY 223 (463)
Q Consensus 154 ---~~~~-----~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~-~~~~~k~~~~~e~~~~~-~~p~~~~~~~l~~~~~ 223 (463)
+++. +.+.|++++++++++.+|+++.+++++|.|+++ +|++++++++.++++.. +++...+...++....
T Consensus 630 ~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~ 709 (995)
T 2fge_A 630 LTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLN 709 (995)
T ss_dssp EEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTC
T ss_pred cccccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhCC
Confidence 5544 889999999999999999999999999999999 99999999999999775 4677777777776544
Q ss_pred -CCCCCCCC-----CCC--------hHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCH-HHHHHHHHhhhCCC-CCCC
Q 012445 224 -SGALANPL-----LAP--------ESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEH-DQLVSVAEPLLSDL-PSIH 286 (463)
Q Consensus 224 -~~~~~~~~-----~~~--------~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~-~~l~~l~~~~~~~l-p~~~ 286 (463)
.++++... ... .+.++.+ .++|++||+++|.+++|+++++| +++ +++.++++++|+.+ |...
T Consensus 710 ~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~~ 788 (995)
T 2fge_A 710 IAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENPS 788 (995)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSCS
T ss_pred hhHHHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccCC
Confidence 44442211 111 1457889 99999999999999999999999 995 99999999999999 7544
Q ss_pred CCCCCCCCCCCCc--eEEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHh
Q 012445 287 PREEPKSVYTGGD--YRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLN 364 (463)
Q Consensus 287 ~~~~~~~~~~~~~--~~~~~~~~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~ 364 (463)
.+..+ ..+.++. ..+..+. ...++..++.... +++++.+++.|++.+|++ ++||++||+
T Consensus 789 ~~~~~-~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~--~~~~d~~al~vl~~iLg~--------------~~L~~~iRe 849 (995)
T 2fge_A 789 GGLVT-WDGRLPLRNEAIVIPT--QVNYVGKAGNIYS--TGYELDGSAYVISKHISN--------------TWLWDRVRV 849 (995)
T ss_dssp SCSCC-CCCCCCCCCEEEECSC--SSBEEEEEEEGGG--GTCCCCTHHHHHHHHHHH--------------THHHHHTTT
T ss_pred CCCCc-ccccCCccceEEEecC--ceEEEEEecCCCC--CCCcccHHHHHHHHHHCC--------------CccHHHhhh
Confidence 32211 1111221 1222222 5566666666554 688999999999999985 689999999
Q ss_pred hCCCeEEEEEeecccCCcceEE-EEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHH
Q 012445 365 EFPQVQSFSAFSNIYNHSGMFG-IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVS 443 (463)
Q Consensus 365 ~~~~~Y~~~a~~~~~~~~~~~~-i~~~~~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~ 443 (463)
.|++|+++++... .|.|+ ++...+| +..++++.+.+.+..+.+.+ +|++||++||..+++++ ....+....+
T Consensus 850 -~g~aYg~~s~~~~---~G~~~~~~s~~dp-~~~~~~~~~~~~~~~l~~~~-~te~el~~ak~~li~~~-~~~~~~~~~~ 922 (995)
T 2fge_A 850 -SGGAYGGFCDFDS---HSGVFSYLSYRDP-NLLKTLDIYDGTGDFLRGLD-VDQETLTKAIIGTIGDV-DSYQLPDAKG 922 (995)
T ss_dssp -TTCCSEEEEEEET---TTTEEEEEEESBS-CSHHHHHHHHTHHHHHHTCC-CCHHHHHHHHHHHHHHH-TCCCCHHHHH
T ss_pred -cCCCcccceEeCC---CccEEEEEEEcCC-CHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhc-cCCCCHHHHH
Confidence 7999999998765 48888 7777777 57888888888888777655 99999999999999998 4456666666
Q ss_pred HHHHHHHHhcCc
Q 012445 444 EDIGRQVLTYGE 455 (463)
Q Consensus 444 ~~l~~~~l~~g~ 455 (463)
......++ +|.
T Consensus 923 ~~~~~~~~-~g~ 933 (995)
T 2fge_A 923 YSSLLRHL-LGV 933 (995)
T ss_dssp HHHHHHHH-TTC
T ss_pred HHHHHHHH-cCc
Confidence 55544444 453
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.97 E-value=1e-28 Score=275.96 Aligned_cols=350 Identities=9% Similarity=0.039 Sum_probs=281.0
Q ss_pred eEEEEcCCCcEEEEecCC---CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeee
Q 012445 79 TKISTLPNGVKIASETSV---SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 155 (463)
Q Consensus 79 ~~~~~L~NG~~v~~~~~~---~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 155 (463)
+..+++.||++||..+++ .|...+.+.+.++...++++..++++++..++..+ ++..++...+ .|.++++++
T Consensus 519 p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~---~~~~~~~~~l--~G~~~~~~~ 593 (990)
T 3cww_A 519 PALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS---LNEYAYAAEL--AGLSYDLQN 593 (990)
T ss_dssp CEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH---HHHHHHHHHH--TTEEEEEEE
T ss_pred CeeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH---HHHhhhHHHh--CCeEEEEEE
Confidence 367889999999976555 46888888888888778878889999999997653 3444454444 588899999
Q ss_pred ccceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHhcCCCCCCCCCCC
Q 012445 156 SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSN-NPQSLLLEAIHSAGYSGALANPLLAP 234 (463)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~-~p~~~~~~~l~~~~~~~~~~~~~~~~ 234 (463)
+.+.+.+++++++++++.+|+++.+.+.+|.|++++|++.|+.++..+++... +|..++.+.+...++.+++.. .+.
T Consensus 594 ~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~~~~--~~~ 671 (990)
T 3cww_A 594 TIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTK--DEL 671 (990)
T ss_dssp ETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBSSCCCH--HHH
T ss_pred cCCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCCCCCCH--HHH
Confidence 99999999999999999999999999999999999999999999999998776 899999999999887544432 346
Q ss_pred hHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CCHHHHHHH---HHhhhCCCCCCCCCC-----C-CCCC-CCCCceEEe
Q 012445 235 ESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSV---AEPLLSDLPSIHPRE-----E-PKSV-YTGGDYRCQ 303 (463)
Q Consensus 235 ~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~~~~l~~l---~~~~~~~lp~~~~~~-----~-~~~~-~~~~~~~~~ 303 (463)
.+.|++++.++|.+|++++|.+.+++++++| ++.+++.++ ++++|+.+|...... . .... ..+....+.
T Consensus 672 ~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (990)
T 3cww_A 672 KEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVYQ 751 (990)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCCEECCGGGCCCCCBBCCCTTEEEEEE
T ss_pred HHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccCCCCCCchhhccccceEEcCCCCeEEEE
Confidence 7889999999999999999998999999999 999999888 677887665331111 0 1111 122232232
Q ss_pred -cCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCc
Q 012445 304 -ADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHS 382 (463)
Q Consensus 304 -~~~~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~ 382 (463)
......++.+.+++..+. ++.++.+++.||+.+|. ++||++||++.|++|++++......+.
T Consensus 752 ~~~~~~~~~~v~~~~~~~~--~~~~~~~~l~ll~~il~---------------~~lf~~LRek~~lgY~v~s~~~~~~g~ 814 (990)
T 3cww_A 752 QRNEVHNNSGIEIYYQTDM--QSTSENMFLELFAQIIS---------------EPAFNTLRTKEQLGYIVFSGPRRANGI 814 (990)
T ss_dssp EECSSCSSEEEEEEEEEEE--CCHHHHHHHHHHHHHHH---------------HHHHHHHTTTTCCCSEEEEEEEEETTE
T ss_pred ecCCCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHHH---------------HHHHHHHHhccCCcEEEEEEEEeeCCE
Confidence 233335666777777754 57889999999999998 999999999999999999987654433
Q ss_pred ceEEE--EEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcC
Q 012445 383 GMFGI--QGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYG 454 (463)
Q Consensus 383 ~~~~i--~~~~~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g 454 (463)
..|.+ +..++|+++.++++.+.+++..+++ + +|++||+++|..+++++....++....+..++.+++..+
T Consensus 815 ~~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~~-~-~te~el~~~k~~li~~~~~~~~~~~~~~~~~~~~i~~~~ 886 (990)
T 3cww_A 815 QGLRFIIQSEKPPHYLESRVEAFLITMEKSIE-D-MTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQ 886 (990)
T ss_dssp EEEEEEEEESSCHHHHHHHHHHHHHHHHHHHH-H-SCHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHTTC
T ss_pred EEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHH-h-cCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Confidence 33333 4446788999999999999999988 6 999999999999999999999999888888888877554
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.91 E-value=6.1e-24 Score=236.48 Aligned_cols=342 Identities=13% Similarity=0.061 Sum_probs=247.4
Q ss_pred CCCcEEEEecCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhh-cCCCCCCCHHHHHHHHHHcCCeeeeeec------
Q 012445 85 PNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMA-FRSTRNRSHLRIVREVEAIGGNVQASAS------ 156 (463)
Q Consensus 85 ~NG~~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~-~~gt~~~s~~~l~~~l~~~g~~~~~~~~------ 156 (463)
.||++|+..+.+ ++.+++.++++.|... .+..+...|+..++ ..||++++..++.+.++.++|+++++++
T Consensus 724 ~~gv~v~~~~~~TNGIvY~~l~fdl~~l~--~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~ 801 (1193)
T 3s5m_A 724 EGNVPILVYEMPTTGIVYLQFVFSLDHLT--VDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDD 801 (1193)
T ss_dssp TTCEEEEEEECCCTTEEEEEEEEECTTCC--HHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCB
T ss_pred cCCeEEEEEECCCCCeEEEEEEEECCCCC--HHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccc
Confidence 489999865555 6799999999999754 34666777777776 5599999999999999999999888864
Q ss_pred ----------cceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHHHhh-cCChHHHHHHHHHHHhc-
Q 012445 157 ----------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE-VNEQLTKVKSEISEV-SNNPQSLLLEAIHSAGY- 223 (463)
Q Consensus 157 ----------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~-~~~~k~~~~~e~~~~-~~~p~~~~~~~l~~~~~- 223 (463)
...+.+++.++.++++++++++.+++.+|+|++.+ +++.+++.+..+.+. ..+....+...+.+...
T Consensus 802 ~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~ 881 (1193)
T 3s5m_A 802 HLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNS 881 (1193)
T ss_dssp TTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCH
T ss_pred cccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCc
Confidence 34578999999999999999999999999999864 777777777766643 33333344443333332
Q ss_pred CCCCCCCCCCC-------------hHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CC-HHHHHHHHHhhhCCCCC----
Q 012445 224 SGALANPLLAP-------------ESAINRLNSTLLEEFVAENYTGPRMVLAASG-VE-HDQLVSVAEPLLSDLPS---- 284 (463)
Q Consensus 224 ~~~~~~~~~~~-------------~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~-~~~l~~l~~~~~~~lp~---- 284 (463)
.+++.....|. ++.++.| .++|++++++.|+++++++.++| .+ .+++.+.++++++.|+.
T Consensus 882 ~~~~~e~~~Gl~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~ 960 (1193)
T 3s5m_A 882 KHYAHNIIYGYENYLKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEE 960 (1193)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHHH
T ss_pred chhhhhhhCChHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhcccc
Confidence 22221111110 1112233 67999999999999999999999 75 57777777766665531
Q ss_pred CCC----------CCC-C---------CCCCC--CCceEEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCC
Q 012445 285 IHP----------REE-P---------KSVYT--GGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGG 342 (463)
Q Consensus 285 ~~~----------~~~-~---------~~~~~--~~~~~~~~~~~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~ 342 (463)
... ... . ..... .....+..+. ++++++.++.... ..+++++++.|++.|||+
T Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~--~v~yv~~~~~~~~--~~~~d~~al~Vl~~iLg~- 1035 (1193)
T 3s5m_A 961 NDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVLPT--FVNSVSMSGILFK--PGEYLDPSFTVIVAALKN- 1035 (1193)
T ss_dssp GGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEECCC--SSBEEEEEEECSC--TTCBCCTHHHHHHHHHHH-
T ss_pred ccccccccccccccccccccccccccccccccccccceeEecCC--cceEEEEEecCCC--CCCCchHHHHHHHHHHCc-
Confidence 000 000 0 00001 1122344455 7899999888776 688999999999999994
Q ss_pred CCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhcC--CCCCCHHH
Q 012445 343 GSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVAT--PGEVDQVQ 420 (463)
Q Consensus 343 ~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~l~~l~~--~g~vt~~e 420 (463)
++||++||++.| +|++++++. ..|.|.++...+| +..+.++.+.+++..+.+ +| +|++|
T Consensus 1036 -------------~~L~~eIREkgG-AYg~~s~~~---~~G~f~~~syrdp-~~~~tl~~~~~~~~~l~~~~~~-~teeE 1096 (1193)
T 3s5m_A 1036 -------------SYLWDTVRGLNG-AYGVFADIE---YDGSVVFLSARDP-NLEKTLATFRESAKGLRKMADT-MTEND 1096 (1193)
T ss_dssp -------------THHHHHHTTTTC-CSEEEEEEC---TTSEEEEEEESBS-CSHHHHHHHHTHHHHHHHHHHH-CCHHH
T ss_pred -------------cHHHHHHHhcCC-eeEEEEecc---CCCcEEEEEEeCC-CHHHHHHHHHHHHHHHHhhcCC-CCHHH
Confidence 799999999865 999999866 5688888877777 477888888777777765 56 99999
Q ss_pred HHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCc
Q 012445 421 LDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE 455 (463)
Q Consensus 421 l~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~ 455 (463)
|++||..+++++. ...++...+..++. +..+|.
T Consensus 1097 L~~ak~~~~~~~d-~p~~p~~~a~~~~~-~~~~Gl 1129 (1193)
T 3s5m_A 1097 LLRYIINTIGTID-KPRRGIELSKLSFL-RLISNE 1129 (1193)
T ss_dssp HHHHHHHHHHHHS-CCCCTHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHhccc-ccCChHHHHHHHHH-HHHcCc
Confidence 9999999999964 55666667766655 444665
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.75 E-value=2.6e-17 Score=148.39 Aligned_cols=132 Identities=17% Similarity=0.171 Sum_probs=121.9
Q ss_pred CceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEEE
Q 012445 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 388 (463)
Q Consensus 309 ~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~ 388 (463)
+++++.++|.+|+ .++++.+++.+++.+|+|| ++|+||++||++ |++|+++++...+.+.|.|.|+
T Consensus 23 ~~~~v~~~~~~~~--~~~~d~~al~vl~~iLggg-----------~sSrL~~~lre~-gl~y~~~~~~~~~~~~g~~~i~ 88 (197)
T 3ih6_A 23 GTPLVAAMYHLPA--AGSPDFVGLDLAATILADT-----------PSSRLYHALVPT-KLASGVFGFTMDQLDPGLAMFG 88 (197)
T ss_dssp CSCEEEEEEECCC--TTSTTHHHHHHHHHHHHSS-----------TTSHHHHHHTTT-TSCSEEEEEEETTSSSCEEEEE
T ss_pred CCceEEEEEecCC--CCCCcHHHHHHHHHHHcCC-----------CCchHHHHHHhc-CceEEEEeccccccCCeEEEEE
Confidence 7999999999997 6789999999999999976 459999999986 9999999988888889999999
Q ss_pred EEeCcc-cHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCcc
Q 012445 389 GTTGSD-FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 456 (463)
Q Consensus 389 ~~~~~~-~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~~ 456 (463)
+.++|+ +.+++++.+.++++++.++| ++++||+++|+.++.++..+++++..++..++++++ +|..
T Consensus 89 ~~~~~~~~~~~~~~~i~~~l~~l~~~~-it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~-~g~~ 155 (197)
T 3ih6_A 89 AQLQPGMDQDKALQTLTATLESLSSKP-FSQEELERARSKWLTAWQQTYADPEKVGVALSEAIA-SGDW 155 (197)
T ss_dssp EECCTTSCHHHHHHHHHHHHHCTTTSC-CCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH-TTCT
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-cCCH
Confidence 999998 59999999999999999888 999999999999999999999999999999999887 4743
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.21 E-value=2.1e-05 Score=69.83 Aligned_cols=161 Identities=5% Similarity=-0.044 Sum_probs=109.2
Q ss_pred CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeee------ccceeEEEEEccCC-
Q 012445 97 SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA------SREQMGYSFDALKT- 169 (463)
Q Consensus 97 ~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~------~~~~~~~~~~~~~~- 169 (463)
.+...+.+.+.+....+ ...-...++..++..|.. ..|.+.+...|...++++ +...+.+++.+.++
T Consensus 22 ~~~~~v~~~~~~~~~~~--~d~~al~vl~~iLggg~s----SrL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~ 95 (197)
T 3ih6_A 22 GGTPLVAAMYHLPAAGS--PDFVGLDLAATILADTPS----SRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGM 95 (197)
T ss_dssp CCSCEEEEEEECCCTTS--TTHHHHHHHHHHHHSSTT----SHHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTS
T ss_pred CCCceEEEEEecCCCCC--CcHHHHHHHHHHHcCCCC----chHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCC
Confidence 34455555566655443 245566777777765533 244444444454333332 23346677777777
Q ss_pred CHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChHhhccCCHHHH
Q 012445 170 YVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLL 246 (463)
Q Consensus 170 ~l~~~l~ll~~~~~~---p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~l 246 (463)
+.+.+++.+...+.+ -.++++++++.|..++..+....+++...+........++.+ .......+.|+++|.+++
T Consensus 96 ~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g~~--~~~~~~~~~i~~vT~~dv 173 (197)
T 3ih6_A 96 DQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGDW--RLFFLQRDRVREAKLDDV 173 (197)
T ss_dssp CHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTCT--THHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCCHHHH
Confidence 699888888777654 358999999999999999988778888777766555544211 111123477899999999
Q ss_pred HHHHHhhccCCCeEEEEeC
Q 012445 247 EEFVAENYTGPRMVLAASG 265 (463)
Q Consensus 247 ~~f~~~~~~~~~~~l~i~G 265 (463)
+++.++++.+.+.+++++|
T Consensus 174 ~~~a~~~l~~~~~~~~~~~ 192 (197)
T 3ih6_A 174 QRAAVAYLVRSNRTEGRYI 192 (197)
T ss_dssp HHHHHHHSSGGGCEEEEEC
T ss_pred HHHHHHhCCccCeEEEEEe
Confidence 9999999999999998887
No 24
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=97.84 E-value=9.3e-05 Score=73.71 Aligned_cols=164 Identities=9% Similarity=-0.021 Sum_probs=112.0
Q ss_pred CCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHH-HcCCeeeeeec------cceeEEEEEcc
Q 012445 95 SVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE-AIGGNVQASAS------REQMGYSFDAL 167 (463)
Q Consensus 95 ~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~-~~g~~~~~~~~------~~~~~~~~~~~ 167 (463)
.+.+...+.+.+.+..... .......++..++..|. ...|.+.+. ..|..+++++. ...+.++..+.
T Consensus 230 ~~~~q~~v~~~~~~~~~~~--~d~~~l~vl~~iLgg~~----~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~ 303 (421)
T 3hdi_A 230 KETEQAHLCLGYPGLPIGD--KDVYALVLLNNVLGGSM----SSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTG 303 (421)
T ss_dssp CCCSEEEEEEEEECCCTTC--TTHHHHHHHHHHHTSSS----SSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEE
T ss_pred CCCCceEEEEEEecCCCCC--chHHHHHHHHHHhCCCc----ccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeC
Confidence 4455667777777654332 34555667777775432 234555554 34654443322 34456777777
Q ss_pred CCCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChHhhccCCH
Q 012445 168 KTYVPEMVELLIDCVR---NPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNS 243 (463)
Q Consensus 168 ~~~l~~~l~ll~~~~~---~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~i~~ 243 (463)
+++.+++++.+.+.+. +-.++++++++.|..++..+....+++...+........+ +.+. ......+.|+++|.
T Consensus 304 ~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~vt~ 381 (421)
T 3hdi_A 304 HDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHR--SLDEMIEQINAVQK 381 (421)
T ss_dssp GGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCC--CHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHcCCH
Confidence 8888888888877654 4469999999999999999987777887776665555444 3221 11123477899999
Q ss_pred HHHHHHHHhhccCCCeEEEEeC-CC
Q 012445 244 TLLEEFVAENYTGPRMVLAASG-VE 267 (463)
Q Consensus 244 ~~l~~f~~~~~~~~~~~l~i~G-~~ 267 (463)
++++++.++++ +.+++++++| .+
T Consensus 382 ~dv~~~a~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 382 QDVSRLAKILL-SASPSISLINANG 405 (421)
T ss_dssp HHHHHHHHHHT-TSCCEEEEEESSC
T ss_pred HHHHHHHHHHc-ccCcEEEEECchh
Confidence 99999999999 9999999999 64
No 25
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=97.83 E-value=0.0004 Score=69.14 Aligned_cols=175 Identities=13% Similarity=0.124 Sum_probs=111.9
Q ss_pred EEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCC----C-CCHHHHHHHHHHcCCeeeeeec------c
Q 012445 89 KIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTR----N-RSHLRIVREVEAIGGNVQASAS------R 157 (463)
Q Consensus 89 ~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~----~-~s~~~l~~~l~~~g~~~~~~~~------~ 157 (463)
++.....+.+...+.+.+.+..... .......++.+++..+.. . .....|.+.+...|..++++++ .
T Consensus 222 ~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe~gl~y~v~~~~~~~~~~ 299 (431)
T 3cx5_A 222 EVRLRDDTLPKAWISLAVEGEPVNS--PNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKDS 299 (431)
T ss_dssp EEEEECTTSSSEEEEEEEECCCTTC--TTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTTTCCSEEEEEEEECSSC
T ss_pred eEEEcCCCCCceEEEEEeecCCCCC--ccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHhcCceeeEeEeecccCCC
Confidence 3433333445667777777654332 344556677777753210 0 0012344444444554433332 2
Q ss_pred ceeEEEEEccC-CCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHHHHh--hcCChHHHHHHHHHHHhc-CCCCCCCC
Q 012445 158 EQMGYSFDALK-TYVPEMVELLIDCVRNP--VFLDWEVNEQLTKVKSEISE--VSNNPQSLLLEAIHSAGY-SGALANPL 231 (463)
Q Consensus 158 ~~~~~~~~~~~-~~l~~~l~ll~~~~~~p--~~~~~~~~~~k~~~~~e~~~--~~~~p~~~~~~~l~~~~~-~~~~~~~~ 231 (463)
..+.+++.+.+ ++++++++.+...+..- .+++++|++.|..+...+.. ...++...+........+ +.+.. .
T Consensus 300 g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~ 377 (431)
T 3cx5_A 300 GLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLS--L 377 (431)
T ss_dssp EEEEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCC--H
T ss_pred ceEEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCC--H
Confidence 34567777777 88888887776544321 59999999999999999988 778887777666555443 43321 1
Q ss_pred CCChHhhccCCHHHHHHHHHhhccCCCeEEEEeC-CC
Q 012445 232 LAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VE 267 (463)
Q Consensus 232 ~~~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G-~~ 267 (463)
....+.|+++|.++++++.++++.+.+++++++| .+
T Consensus 378 ~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 378 GEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHcccCCcEEEEEcchh
Confidence 1234678999999999999999998999999999 54
No 26
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=97.82 E-value=0.00012 Score=72.75 Aligned_cols=159 Identities=12% Similarity=0.013 Sum_probs=110.9
Q ss_pred CeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeeec------cceeEEEEEccCCCH
Q 012445 98 PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS------REQMGYSFDALKTYV 171 (463)
Q Consensus 98 ~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~------~~~~~~~~~~~~~~l 171 (463)
....+.+.+.+....++ ......++.+++..|. ...|.+.+...|...++++. ...+.++..+.+++.
T Consensus 234 ~q~~~~~~~~~~~~~~~--d~~~l~vl~~iLgg~~----~srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~ 307 (406)
T 3eoq_A 234 RALYLVALFPGVAYQEE--ARFPGQVLAHLLGEEG----SGRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPARK 307 (406)
T ss_dssp SSEEEEEEEECCCTTCT--THHHHHHHHHHHHCTT----TSHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGGH
T ss_pred cceEEEEEecCCCCCCc--hHHHHHHHHHHhCCCc----chHHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcchH
Confidence 56666666665554333 3445667777775442 23455555446654444432 234667777788889
Q ss_pred HHHHHHHHHhhhCC---CCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChHhhccCCHHHHH
Q 012445 172 PEMVELLIDCVRNP---VFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTLLE 247 (463)
Q Consensus 172 ~~~l~ll~~~~~~p---~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~i~~~~l~ 247 (463)
+++++.+.+.+... .++++++++.|..++..+....+++...+........+ ..+.. .....+.|+++|.++++
T Consensus 308 ~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~vt~~dv~ 385 (406)
T 3eoq_A 308 GEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLS--LEEVKARVQRVTSREVN 385 (406)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhCCHHHHH
Confidence 88888887766543 59999999999999999988888888877776666665 33321 12234788999999999
Q ss_pred HHHHhhccCCCeEEEEeC
Q 012445 248 EFVAENYTGPRMVLAASG 265 (463)
Q Consensus 248 ~f~~~~~~~~~~~l~i~G 265 (463)
++.++++.+.++ ++++|
T Consensus 386 ~~a~~~l~~~~~-~~vvG 402 (406)
T 3eoq_A 386 ALLERGFLEKGL-YYLVL 402 (406)
T ss_dssp HHHHTTTTTSCE-EEEEE
T ss_pred HHHHHhcCcccE-EEEEC
Confidence 999999999998 99998
No 27
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=97.79 E-value=0.0011 Score=66.18 Aligned_cols=167 Identities=10% Similarity=0.018 Sum_probs=111.3
Q ss_pred CCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcC-----CCCCCCHHHHHHHHH-HcCCeeeeee------ccceeEE
Q 012445 95 SVSPVASISLYVGCGSIYESPISFGTTHLLERMAFR-----STRNRSHLRIVREVE-AIGGNVQASA------SREQMGY 162 (463)
Q Consensus 95 ~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-----gt~~~s~~~l~~~l~-~~g~~~~~~~------~~~~~~~ 162 (463)
.+.+...+.+.+++..... .......++.+++.. |.+......|.+.+. ..|..++++. ....+.+
T Consensus 242 ~~~~~~~v~~~~~~~~~~~--~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~i 319 (443)
T 1hr6_B 242 NTLPTTHIAIALEGVSWSA--PDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGM 319 (443)
T ss_dssp TTCSEEEEEEEEECCCTTC--TTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEE
T ss_pred CCccceEEEEEEecCCCCC--ccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEEE
Confidence 3456777777777754332 344555667777632 111122245665665 4554333222 2345566
Q ss_pred EEEcc--CCCHHHHHHHHHHhh---hCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChH
Q 012445 163 SFDAL--KTYVPEMVELLIDCV---RNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPES 236 (463)
Q Consensus 163 ~~~~~--~~~l~~~l~ll~~~~---~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~ 236 (463)
++.+. +++.+++++.+...+ .+-.++++++++.|..+...+.....++...+........+ +.+.. .....+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~ 397 (443)
T 1hr6_B 320 YIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLS--PEEVFE 397 (443)
T ss_dssp EEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCC--HHHHHH
T ss_pred EEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCC--HHHHHH
Confidence 77777 789998888877655 45559999999999999999987777787666555554433 43322 112347
Q ss_pred hhccCCHHHHHHHHHhhccCCCeEEEEeC
Q 012445 237 AINRLNSTLLEEFVAENYTGPRMVLAASG 265 (463)
Q Consensus 237 ~l~~i~~~~l~~f~~~~~~~~~~~l~i~G 265 (463)
.|.++|.++++++.++++.+++++++++|
T Consensus 398 ~i~~vt~~dv~~~a~~~l~~~~~~~~v~g 426 (443)
T 1hr6_B 398 QVDKITKDDIIMWANYRLQNKPVSMVALG 426 (443)
T ss_dssp HHHTCCHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHhCCHHHHHHHHHHHhccCCcEEEEEC
Confidence 78999999999999999999999999999
No 28
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=97.75 E-value=0.00082 Score=66.75 Aligned_cols=164 Identities=12% Similarity=0.034 Sum_probs=111.4
Q ss_pred CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHH-HcCCeeeeeec------cceeEEEEEccC
Q 012445 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE-AIGGNVQASAS------REQMGYSFDALK 168 (463)
Q Consensus 96 ~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~-~~g~~~~~~~~------~~~~~~~~~~~~ 168 (463)
+.+...+.+.+.+..... .......++..++..| .....|.+.+. ..|..++++++ ...+.+++.+.+
T Consensus 239 ~~~~~~v~~~~~~~~~~~--~~~~~~~vl~~iLg~~---~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~ 313 (424)
T 3amj_B 239 PATQAHIAIGMPTLKRGD--PDFFPLVVGNYALGGG---GFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRA 313 (424)
T ss_dssp SSSEEEEEEEEEEEBTTC--TTHHHHHHHHHHHTTS---GGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEES
T ss_pred CCCccEEEeeccCCCCCC--cchHHHHHHHHHhCCC---CccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCc
Confidence 446677777777544322 3445566777776432 01234555564 35655544432 234667777778
Q ss_pred CCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChHhhccCCHHH
Q 012445 169 TYVPEMVELLIDCVR---NPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTL 245 (463)
Q Consensus 169 ~~l~~~l~ll~~~~~---~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~ 245 (463)
++.+++++.+...+. +-.+++++|++.|+.+...+.....++...+........++.++.. .....+.|+++|.++
T Consensus 314 ~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vt~~d 392 (424)
T 3amj_B 314 EKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYGLPLDY-LDHYTERVQAVTVEQ 392 (424)
T ss_dssp TTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHTTCCTTT-TTSHHHHHHTCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHHcCCChhH-HHHHHHHHHcCCHHH
Confidence 888888888777665 3358999999999999998887777887776665544433333322 122457899999999
Q ss_pred HHHHHHhhccCCCeEEEEeC
Q 012445 246 LEEFVAENYTGPRMVLAASG 265 (463)
Q Consensus 246 l~~f~~~~~~~~~~~l~i~G 265 (463)
++++.++++.+++++++++|
T Consensus 393 v~~~a~~~l~~~~~~~~~~~ 412 (424)
T 3amj_B 393 VREAFARHVKRENLITVVVG 412 (424)
T ss_dssp HHHHHHHHCCGGGCEEEEEE
T ss_pred HHHHHHHhcCccceEEEEEC
Confidence 99999999999999999999
No 29
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=97.66 E-value=0.00095 Score=66.92 Aligned_cols=168 Identities=11% Similarity=0.028 Sum_probs=108.9
Q ss_pred CCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCC-----CCCCCHHHHHHHHHHcCCeeeeee------ccceeEEE
Q 012445 95 SVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRS-----TRNRSHLRIVREVEAIGGNVQASA------SREQMGYS 163 (463)
Q Consensus 95 ~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~g-----t~~~s~~~l~~~l~~~g~~~~~~~------~~~~~~~~ 163 (463)
.+.+...+.+.+++..... .......++.+++..+ .+.-....|.+.+...|+.++++. ....+.++
T Consensus 246 ~~~~~~~v~~~~~~~~~~~--~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay~~~s~~~~~~~~g~~~i~ 323 (446)
T 1pp9_A 246 DGLPLAHVAIAVEGPGWAH--PDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAH 323 (446)
T ss_dssp TTSSSEEEEEEEEECCTTC--THHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEEEEEEEECSSCEEEEEE
T ss_pred CCccceEEEEEEecCCCCC--ccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHhcCCeEEEEEecccCCCCeEEEEE
Confidence 3345666667676554432 2445566777777421 000112345544544554333322 12345667
Q ss_pred EEccCCCHHHHHHHHHHhh---hCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChHhhc
Q 012445 164 FDALKTYVPEMVELLIDCV---RNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAIN 239 (463)
Q Consensus 164 ~~~~~~~l~~~l~ll~~~~---~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~ 239 (463)
..+.+++.+++++.+...+ .+. +++++++++|..+...+.....+|...+........+ +.+.. .....+.|.
T Consensus 324 ~~~~~~~~~~~~~~i~~~l~~l~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~i~ 400 (446)
T 1pp9_A 324 FVCDHMSIDDMMFVLQGQWMRLCTS-ATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIP--LAEWESRIA 400 (446)
T ss_dssp EEECTTSHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCC--HHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Confidence 7777788888888877655 334 9999999999999999987777887766665555433 33321 112346789
Q ss_pred cCCHHHHHHHHHhhccCCCeEEEEeC-CC
Q 012445 240 RLNSTLLEEFVAENYTGPRMVLAASG-VE 267 (463)
Q Consensus 240 ~i~~~~l~~f~~~~~~~~~~~l~i~G-~~ 267 (463)
++|.++++++.++++.+++++++++| .+
T Consensus 401 ~vt~edv~~~a~~~~~~~~~~~~~~g~~~ 429 (446)
T 1pp9_A 401 EVDARVVREVCSKYFYDQCPAVAGFGPIE 429 (446)
T ss_dssp TCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred cCCHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 99999999999999998999999999 53
No 30
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=97.59 E-value=0.00017 Score=71.98 Aligned_cols=163 Identities=12% Similarity=0.060 Sum_probs=106.9
Q ss_pred CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCC-CCCCCHHHHHHHHHH-cCCeeeeeec------cceeEEEEEcc
Q 012445 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRS-TRNRSHLRIVREVEA-IGGNVQASAS------REQMGYSFDAL 167 (463)
Q Consensus 96 ~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~g-t~~~s~~~l~~~l~~-~g~~~~~~~~------~~~~~~~~~~~ 167 (463)
+.....+.+.+.+..... .......++..++..| .. ..|.+.+.. .|+.++++++ ...+.+++.+.
T Consensus 246 ~~~~~~v~~~~~~~~~~~--~d~~~l~vl~~iLg~~~~~----s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~ 319 (434)
T 3gwb_A 246 PSSQTSLMLAQLGIDRDD--PDYAAVSLGNQILGGGGFG----TRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTR 319 (434)
T ss_dssp CSSEEEEEEEEECCBTTC--TTHHHHHHHHHHHHSSSSC----SHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEE
T ss_pred CCCceeEEecCcCCCCCC--cchHHHHHHHHHhCCCccc----chhHHHHHhhcCCcceeeeecccCCCceeEEEEEecc
Confidence 345666666666554333 2445566666676433 22 245444543 3544333322 24566777888
Q ss_pred CCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChHhhccCCHH
Q 012445 168 KTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNST 244 (463)
Q Consensus 168 ~~~l~~~l~ll~~~~~~---p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~i~~~ 244 (463)
+++.+++++.+.+.+.+ -.+++++|++.|..++..+.....++...+........++.+... .....+.|+++|.+
T Consensus 320 ~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vt~~ 398 (434)
T 3gwb_A 320 AEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLPLSY-LEDFMRQSQELTVE 398 (434)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTCCTTH-HHHHHHHHHHCCHH
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcCCCccH-HHHHHHHHHhCCHH
Confidence 88888888888776654 358999999999999999888777888777666655443322211 11134778999999
Q ss_pred HHHHHHHhhccCCCeEEEEeC
Q 012445 245 LLEEFVAENYTGPRMVLAASG 265 (463)
Q Consensus 245 ~l~~f~~~~~~~~~~~l~i~G 265 (463)
+++++.++++.+.+++++++|
T Consensus 399 dv~~~a~~~l~~~~~~~~vvg 419 (434)
T 3gwb_A 399 QVKAAMNKHLNVDKMVIVSAG 419 (434)
T ss_dssp HHHHHHHHHCCGGGCEEEEEE
T ss_pred HHHHHHHHhcChhhEEEEEEc
Confidence 999999999999999999999
No 31
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=97.58 E-value=0.0025 Score=64.49 Aligned_cols=167 Identities=14% Similarity=0.079 Sum_probs=110.5
Q ss_pred CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCC-------CCCCCHHHHHHHH-HHcCCeeeeee------ccceeE
Q 012445 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRS-------TRNRSHLRIVREV-EAIGGNVQASA------SREQMG 161 (463)
Q Consensus 96 ~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~g-------t~~~s~~~l~~~l-~~~g~~~~~~~------~~~~~~ 161 (463)
+.+...+.+.+.+..... .......++..++..| .+.--...|.+.+ +..|...+++. ....+.
T Consensus 240 ~~~~~~v~~~~~~~~~~~--~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~ 317 (475)
T 1hr6_A 240 LPELFHIQIGFEGLPIDH--PDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFG 317 (475)
T ss_dssp SCCCEEEEEEEECCCTTC--TTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEE
T ss_pred CccceEEEEEEecCCCCC--ccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEE
Confidence 345666777777544332 2344456677776322 1111124555555 33465433332 224466
Q ss_pred EEEEccCCCHHHHHHHHHHhhhCC------CCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 012445 162 YSFDALKTYVPEMVELLIDCVRNP------VFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAP 234 (463)
Q Consensus 162 ~~~~~~~~~l~~~l~ll~~~~~~p------~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~ 234 (463)
+++.+.+++++++++.+...+..- .+++++|+++|..++..+.....++...+........+ +.+.. ....
T Consensus 318 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~ 395 (475)
T 1hr6_A 318 ISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIP--VNEM 395 (475)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCC--HHHH
T ss_pred EEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC--HHHH
Confidence 777888889999999887766542 38999999999999999987777887766665555443 43321 1123
Q ss_pred hHhhccCCHHHHHHHHHhhccC---------CCeEEEEeC-C
Q 012445 235 ESAINRLNSTLLEEFVAENYTG---------PRMVLAASG-V 266 (463)
Q Consensus 235 ~~~l~~i~~~~l~~f~~~~~~~---------~~~~l~i~G-~ 266 (463)
.+.|+++|.++++++.++++.+ .+++++++| .
T Consensus 396 ~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 396 ISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHHHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 4778999999999999999987 589999999 5
No 32
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=97.43 E-value=0.0039 Score=62.06 Aligned_cols=165 Identities=13% Similarity=0.077 Sum_probs=108.9
Q ss_pred CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCC----CCCCHHHHHHHHH-HcCCeeeeeec------cceeEEEE
Q 012445 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRST----RNRSHLRIVREVE-AIGGNVQASAS------REQMGYSF 164 (463)
Q Consensus 96 ~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt----~~~s~~~l~~~l~-~~g~~~~~~~~------~~~~~~~~ 164 (463)
+.+...+.+.+.+..... .......++.+++..|. +.--...|.+.+. ..|..++++++ ...+.+++
T Consensus 249 ~~~~~~v~~~~~~~~~~~--~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~ 326 (439)
T 1pp9_B 249 GDSLVHAALVAESAAIGS--AEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYT 326 (439)
T ss_dssp CCSEEEEEEEEECCCTTS--HHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEE
T ss_pred CccceEEEEEecCCCCCc--hHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceEEEEE
Confidence 456677777777654332 23445566677764321 0001234555554 45644433332 23455677
Q ss_pred EccCCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChHhhcc
Q 012445 165 DALKTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINR 240 (463)
Q Consensus 165 ~~~~~~l~~~l~ll~~~~~~---p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~ 240 (463)
.+.+++++++++.+...+.. -.++++++++.|..+...+.....++...+........+ +.+. ......+.|++
T Consensus 327 ~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~ 404 (439)
T 1pp9_B 327 ISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYT--PPSTVLQQIDA 404 (439)
T ss_dssp EEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHT
T ss_pred EeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHhc
Confidence 77778888888887766643 459999999999999999887777887776666555554 3322 11223477899
Q ss_pred CCHHHHHHHHHhhccCCCeEEEEeC
Q 012445 241 LNSTLLEEFVAENYTGPRMVLAASG 265 (463)
Q Consensus 241 i~~~~l~~f~~~~~~~~~~~l~i~G 265 (463)
+|.++++++.++++. .+++++++|
T Consensus 405 vt~~dv~~~a~~~~~-~~~~~~v~g 428 (439)
T 1pp9_B 405 VADADVINAAKKFVS-GRKSMAASG 428 (439)
T ss_dssp CCHHHHHHHHHHHHH-SCEEEEEEE
T ss_pred CCHHHHHHHHHHHhc-CCceEEEEC
Confidence 999999999999988 899999999
No 33
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=97.19 E-value=0.0011 Score=66.51 Aligned_cols=163 Identities=10% Similarity=-0.036 Sum_probs=103.7
Q ss_pred eEEEEEEEcccc---cCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHH-HHcCCeeeeeec-----c---ceeEEEEEc
Q 012445 99 VASISLYVGCGS---IYESPISFGTTHLLERMAFRSTRNRSHLRIVREV-EAIGGNVQASAS-----R---EQMGYSFDA 166 (463)
Q Consensus 99 ~~~i~l~~~~Gs---~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l-~~~g~~~~~~~~-----~---~~~~~~~~~ 166 (463)
...+.+.+.+.. ..+. ...-...++..++..|. ...|.+.+ +..|...+++++ . ..+.+++.+
T Consensus 244 ~~~v~l~~~~~~~~~~~~~-~~~~~~~vl~~iLg~~~----~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~ 318 (445)
T 3ami_A 244 LPYLALAWHVPAIVDLDKS-RDAYALEILAAVLDGYD----GARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVP 318 (445)
T ss_dssp SCEEEEEEEECCCSSTTCC-HHHHHHHHHHHHHHSST----TCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEE
T ss_pred ccEEEEEEEcCCcccccCC-hhHHHHHHHHHHHcCCc----chHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEEE
Confidence 334555555554 2212 23334566666765442 23455544 355654444321 2 234556666
Q ss_pred cCC-CHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChHhhccCC
Q 012445 167 LKT-YVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLN 242 (463)
Q Consensus 167 ~~~-~l~~~l~ll~~~~~~---p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~i~ 242 (463)
.++ +.+++++.+...+.. -.++++++++.|+.++..+.....++...+........++.+.. ......+.|+++|
T Consensus 319 ~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~i~~vt 397 (445)
T 3ami_A 319 SKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWR-DDDRFYQQLRSVT 397 (445)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTT-HHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChH-HHHHHHHHHHcCC
Confidence 666 488888877666544 34899999999999999998777777776665555444332221 1112347789999
Q ss_pred HHHHHHHHHhhccCCCeEEEEeC-CC
Q 012445 243 STLLEEFVAENYTGPRMVLAASG-VE 267 (463)
Q Consensus 243 ~~~l~~f~~~~~~~~~~~l~i~G-~~ 267 (463)
.+++.++.++++.+++++++++| ..
T Consensus 398 ~~dv~~~a~~~l~~~~~~~~~~~p~~ 423 (445)
T 3ami_A 398 AAEVKAAAARLLTDDTLTVANLVPLP 423 (445)
T ss_dssp HHHHHHHHHTTSCSTTEEEEEEEEEC
T ss_pred HHHHHHHHHHHcCcCCeEEEEEccCc
Confidence 99999999999999999999999 54
No 34
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=96.90 E-value=0.0049 Score=60.96 Aligned_cols=162 Identities=13% Similarity=0.051 Sum_probs=104.0
Q ss_pred CCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHH-HcCCeeeeeec----cceeEEEEEccCC
Q 012445 95 SVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE-AIGGNVQASAS----REQMGYSFDALKT 169 (463)
Q Consensus 95 ~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~-~~g~~~~~~~~----~~~~~~~~~~~~~ 169 (463)
.+.+...+.+.+.++..... .......++.+++..|. ...|.+.+. ..|..++++++ ...+.+++.+.++
T Consensus 250 ~~~~~~~v~~~~~~~~~~~~-~~~~~~~vl~~iLg~~~----~s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~ 324 (425)
T 3d3y_A 250 EVLAQSKLNLAYNTDIYYGD-SYYFALQVFNGIFGGFP----HSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGK 324 (425)
T ss_dssp EECSSEEEEEEEECCCCTTS-TTHHHHHHHHHHHTTST----TSHHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGG
T ss_pred CCccccEEEEEeecCCCCCC-chHHHHHHHHHHhCCCh----hhHHHHHHHHhcCeEEEEeccccccCceEEEEEecCHh
Confidence 34456667777776532222 34556677777775432 234555554 34554444332 3456677777778
Q ss_pred CHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCChHhhccCCHHH
Q 012445 170 YVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTL 245 (463)
Q Consensus 170 ~l~~~l~ll~~~~~~---p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~i~~~~ 245 (463)
+++++++.+...+.. -.+++++|++.|..+...+.....++...+........+ +.+. ......+.|+++|.++
T Consensus 325 ~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~i~~vt~ed 402 (425)
T 3d3y_A 325 NRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTML--TAEEWIARINAVTIPE 402 (425)
T ss_dssp GHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSCC--CHHHHHHHHHHCCHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCCC--CHHHHHHHHHhCCHHH
Confidence 888888877665543 458999999999999999988778888777666555544 3222 1112346789999999
Q ss_pred HHHHHHhhccCCCeEEEEeC
Q 012445 246 LEEFVAENYTGPRMVLAASG 265 (463)
Q Consensus 246 l~~f~~~~~~~~~~~l~i~G 265 (463)
++++.++++ +++. ++++|
T Consensus 403 v~~~a~~~~-~~~~-~~v~g 420 (425)
T 3d3y_A 403 IQEVAKRLE-LQAI-FFLEG 420 (425)
T ss_dssp HHHHHHHCE-EEEE-EEEEE
T ss_pred HHHHHHhcc-CceE-EEEeC
Confidence 999999865 4444 45554
No 35
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=96.43 E-value=0.038 Score=56.09 Aligned_cols=162 Identities=11% Similarity=0.078 Sum_probs=94.5
Q ss_pred cCCCCeEEEEEEEcccccCCCCCCCc-----HHHHHHHhhcCCCCCCCHHHHHHHHH---HcCCeeeeee----ccceeE
Q 012445 94 TSVSPVASISLYVGCGSIYESPISFG-----TTHLLERMAFRSTRNRSHLRIVREVE---AIGGNVQASA----SREQMG 161 (463)
Q Consensus 94 ~~~~~~~~i~l~~~~Gs~~e~~~~~g-----~a~ll~~l~~~gt~~~s~~~l~~~l~---~~g~~~~~~~----~~~~~~ 161 (463)
+.+.+...+.+.+++.....++ ... ...++..+++ ..+...+. ..|...+++. .++...
T Consensus 261 ~~~~~q~~v~l~~~~~~~~~~d-~~~l~~~~~~~v~~~iLg--------~~L~~~lre~~~~gl~y~~~s~~~~~~~~~~ 331 (492)
T 3go9_A 261 NEQAAQDTLSLMWDTPWHPIQD-SMALSRYWRSDLAREALF--------WHIKQVLEKNNQKNLKLGFDCRVQYQRAQCA 331 (492)
T ss_dssp ESSCSSEEEEEEEEEECCCCCS-HHHHHHHHHHHHHHHHHH--------HHHHHHHHHSCCTTCEEEEEEEEETTEEEEE
T ss_pred cCCCCCcEEEEEecCCCCCccc-HHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhccccccccCchhhhhhcceE
Confidence 3444555666666665443332 111 1244555553 13443343 3454444333 334556
Q ss_pred EEEEccCCCHHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHHhcCCCCCCCCC-
Q 012445 162 YSFDALKTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVSN-----NPQSLLLEAIHSAGYSGALANPLL- 232 (463)
Q Consensus 162 ~~~~~~~~~l~~~l~ll~~~~~~---p~~~~~~~~~~k~~~~~e~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~~~- 232 (463)
|.+.+..++.+++++.+...+.. -.++++++++.|..++..+..... ++...+...+........++.+..
T Consensus 332 ~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 411 (492)
T 3go9_A 332 IHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQY 411 (492)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHH
T ss_pred EEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHH
Confidence 77777888999888888776544 358999999999999988765422 334444444433332322222210
Q ss_pred -CC-hHhhccCCHHHHHHHHHhhccCCCeEEEEeC
Q 012445 233 -AP-ESAINRLNSTLLEEFVAENYTGPRMVLAASG 265 (463)
Q Consensus 233 -~~-~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G 265 (463)
.. .+.|+.+|.+++.++.++++.++ ..++++|
T Consensus 412 ~~~~~~~i~~vT~edV~~~a~~~l~~~-~~~vvvg 445 (492)
T 3go9_A 412 QKLRQAFLSGLTLAELNRELKQQLSQD-TTLVLMQ 445 (492)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTSC-CEEEEEE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCCC-CeEEEEc
Confidence 01 14488999999999999999865 4455555
No 36
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=93.05 E-value=2.5 Score=40.00 Aligned_cols=122 Identities=9% Similarity=-0.015 Sum_probs=80.2
Q ss_pred CceEEEEEeecCCCCCCCcchHHHHHHHHhhCCC-CCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEE
Q 012445 309 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGG-GSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI 387 (463)
Q Consensus 309 ~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~-~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i 387 (463)
+...+.+.+.+.. ..+.......++..++..| ..++ ...+.+ ..+..|..+++++. .-.+.+
T Consensus 11 ~~v~~~~~~~~Gs--~~e~~~G~ah~leh~lf~Gt~~~~--------~~~l~~-~l~~~G~~~na~t~------~~~t~~ 73 (352)
T 3cx5_B 11 KISTLAVKVHGGS--RYATKDGVAHLLNRFNFQNTNTRS--------ALKLVR-ESELLGGTFKSTLD------REYITL 73 (352)
T ss_dssp SEEEEEEEESCSG--GGCSSTTHHHHHHHHTTSCBSSSC--------HHHHHH-HHHHHTCEEEEEEC------SSCEEE
T ss_pred ceEEEEEEEeeec--cCCCcccHHHHHHHHhccCcCCCC--------HHHHHH-HHHHhCCeEEEEEc------cceEEE
Confidence 5555566665543 4445566778888887532 1111 013433 33455665444432 224566
Q ss_pred EEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 012445 388 QGTTGSDFVSKAIDLAARELISVATPGEVDQVQLD-RAKQSTKSAILMNLESRMVVSEDIGRQVL 451 (463)
Q Consensus 388 ~~~~~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~-~aK~~~~~~~~~~~~s~~~~~~~l~~~~l 451 (463)
++.+.+++.+.+++.+.+.+.+. .+++++|+ +.|..++..+.+..+++..++.+.....+
T Consensus 74 ~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~ 134 (352)
T 3cx5_B 74 KATFLKDDLPYYVNALADVLYKT----AFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAIT 134 (352)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHB----CCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred EEEechhhHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 77888888988888888777654 39999998 99999999999888888887766665555
No 37
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=37.58 E-value=45 Score=20.21 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHH
Q 012445 401 DLAARELISVATPGEVDQVQLDRA 424 (463)
Q Consensus 401 ~~~~~~l~~l~~~g~vt~~el~~a 424 (463)
..+..++..++++| ++.+|+...
T Consensus 3 aalkselqalkkeg-fspeelaal 25 (48)
T 1g6u_A 3 AALKSELQALKKEG-FSPEELAAL 25 (48)
T ss_dssp HHHHHHHHHHHHTT-CSHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHH
Confidence 45678888898999 999998644
No 38
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=22.18 E-value=71 Score=24.45 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=16.8
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHH
Q 012445 407 LISVATPGEVDQVQLDRAKQSTK 429 (463)
Q Consensus 407 l~~l~~~g~vt~~el~~aK~~~~ 429 (463)
|+.++..+++|++||+..|..+.
T Consensus 12 LW~lA~~~NFT~~ELeSlK~EL~ 34 (109)
T 2fcw_A 12 LWDLAQSANLTDKELEAFREELK 34 (109)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Confidence 45555445799999999887754
No 39
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=20.96 E-value=1.4e+02 Score=21.92 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=43.7
Q ss_pred hcCCCCCCCHHHHHHHHHHcCCeeeeeeccceeE-EEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHH
Q 012445 128 AFRSTRNRSHLRIVREVEAIGGNVQASASREQMG-YSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQL 196 (463)
Q Consensus 128 ~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k 196 (463)
.+.|+-..++.++...++.+|+.+..+++..... +.+.....++..+.++ -=|.+++++|-...
T Consensus 14 v~TG~l~~~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~l-----gI~Ii~E~~f~~~l 78 (92)
T 1l7b_A 14 VITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARAL-----GVPTLTEEELYRLL 78 (92)
T ss_dssp ECSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCS-----SSCCEEHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHc-----CCcEEeHHHHHHHH
Confidence 3456554588999999999999998888764333 3334344577777654 44667887776654
Done!