Query 012447
Match_columns 463
No_of_seqs 193 out of 1094
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 02:44:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012447.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012447hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2099 Glycogen phosphorylase 100.0 3E-161 6E-166 1252.6 27.0 451 10-462 6-462 (843)
2 TIGR02093 P_ylase glycogen/sta 100.0 1E-147 3E-152 1208.2 37.8 422 36-462 1-426 (794)
3 cd04300 GT1_Glycogen_Phosphory 100.0 4E-146 8E-151 1199.7 39.2 425 33-462 1-429 (797)
4 PRK14985 maltodextrin phosphor 100.0 5E-146 1E-150 1194.0 39.4 424 27-462 5-428 (798)
5 PRK14986 glycogen phosphorylas 100.0 5E-145 1E-149 1189.8 40.4 437 19-462 4-442 (815)
6 PF00343 Phosphorylase: Carboh 100.0 2E-127 5E-132 1039.3 24.4 341 116-462 1-343 (713)
7 COG0058 GlgP Glucan phosphoryl 100.0 9E-115 2E-119 942.6 18.9 382 28-462 5-386 (750)
8 TIGR02094 more_P_ylases alpha- 100.0 2.1E-70 4.4E-75 593.6 20.4 273 87-462 1-274 (601)
9 cd04299 GT1_Glycogen_Phosphory 100.0 1.4E-69 2.9E-74 598.6 22.7 277 84-461 85-362 (778)
10 cd03791 GT1_Glycogen_synthase_ 97.7 0.00029 6.2E-09 74.1 11.6 214 131-461 8-221 (476)
11 TIGR02095 glgA glycogen/starch 97.3 0.0025 5.4E-08 67.5 12.3 204 134-460 12-215 (473)
12 PF08323 Glyco_transf_5: Starc 97.2 0.00049 1.1E-08 67.7 6.0 211 136-460 13-225 (245)
13 PF11897 DUF3417: Protein of u 96.5 0.0014 3E-08 58.5 1.8 44 54-100 73-118 (118)
14 PLN02939 transferase, transfer 96.4 0.16 3.4E-06 59.4 17.9 78 51-167 449-526 (977)
15 PRK14098 glycogen synthase; Pr 95.5 0.11 2.4E-06 56.2 11.4 109 298-460 122-230 (489)
16 PRK00654 glgA glycogen synthas 95.2 0.11 2.3E-06 55.5 9.8 36 133-168 11-46 (466)
17 PRK14099 glycogen synthase; Pr 89.7 0.56 1.2E-05 50.7 5.7 36 132-167 13-48 (485)
18 PF14474 RTC4: RTC4-like domai 52.4 7 0.00015 35.2 1.1 32 344-375 85-117 (124)
19 COG0297 GlgA Glycogen synthase 45.1 58 0.0013 35.9 7.0 40 130-171 8-47 (487)
20 PF00782 DSPc: Dual specificit 42.5 48 0.001 28.6 4.8 47 313-372 64-113 (133)
21 COG0380 OtsA Trehalose-6-phosp 41.9 32 0.0007 37.9 4.4 55 332-407 147-201 (486)
22 cd00127 DSPc Dual specificity 41.5 47 0.001 28.7 4.7 38 331-372 81-121 (139)
23 PF14407 Frankia_peptide: Ribo 37.8 11 0.00023 30.3 -0.0 42 92-133 2-43 (61)
24 COG5405 HslV ATP-dependent pro 35.5 34 0.00073 32.7 2.8 39 348-386 134-176 (178)
25 smart00195 DSPc Dual specifici 31.1 75 0.0016 27.7 4.3 39 331-373 78-119 (138)
26 cd03788 GT1_TPS Trehalose-6-Ph 26.9 78 0.0017 34.1 4.3 55 332-407 131-185 (460)
27 PF00814 Peptidase_M22: Glycop 25.9 28 0.0006 35.0 0.6 53 109-163 33-88 (268)
28 PF13443 HTH_26: Cro/C1-type H 23.4 42 0.0009 25.5 1.1 24 110-133 40-63 (63)
29 TIGR00244 transcriptional regu 22.0 87 0.0019 29.3 3.0 59 4-69 52-117 (147)
30 PF14737 DUF4470: Domain of un 21.7 78 0.0017 26.9 2.5 51 289-347 16-67 (100)
31 PF08466 IRK_N: Inward rectifi 21.7 31 0.00066 26.1 0.0 34 425-463 5-38 (45)
32 PF11212 DUF2999: Protein of u 20.5 95 0.002 26.0 2.6 21 111-131 58-78 (82)
No 1
>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-161 Score=1252.65 Aligned_cols=451 Identities=50% Similarity=0.858 Sum_probs=436.6
Q ss_pred chhhhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCceEEE
Q 012447 10 NEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~at~~~~y~Ala~~vrd~l~~~w~~t~~~~~~~~~k~vyY 89 (463)
.+.++||||++++.+...++.+++++|.+|+++++.+|+..+++.++|.|+|++|||+|+.+|++|+++|++.++|||||
T Consensus 6 ~~~~~r~qis~r~~~~~~~~~e~~~~f~~H~~ftl~k~~~~~~~~~~yfA~a~tvRD~Lv~~W~rTqqhy~~~dpKrvYY 85 (843)
T KOG2099|consen 6 IDSEKRKQISVRGIAGVEDVAEVKKSFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRVYY 85 (843)
T ss_pred cccchhhhcchhcccCCccHHHHHHHHHhheeeeeecCcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeE
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EechhcccchhHHHhhcCCcHHHHHHHHHHcCCCHHHHHhhhcccCCCCCCcccchhhhHhhhhccCCCeEEEEeccCCc
Q 012447 90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYG 169 (463)
Q Consensus 90 lSmEFl~Gr~L~nnL~NLgl~~~~~e~l~~lg~~l~~i~~~E~D~~LgnGGLGrLAacfldS~AtLglP~~G~GirY~yG 169 (463)
|||||+|||+|.|.++||||...+.+||.++|+|+|+|+|+|+||||||||||||||||||||||||+|++||||||+||
T Consensus 86 LSlEf~mGRaL~Ntm~Nlglq~~~deAl~qlG~dlEel~e~E~DagLGNGGLGRLAaCFlDSMATlglpA~GYGlRYeyG 165 (843)
T KOG2099|consen 86 LSLEFYMGRALQNTMINLGLQNACDEALYQLGLDLEELEEQEEDAGLGNGGLGRLAACFLDSMATLGLPAYGYGLRYEYG 165 (843)
T ss_pred eehHHhhhhHHHHHHHhccCcchhHHHHHHhCcCHHHHHhcCcCcCcCCcchHHHHHHHHHHHhhcCCccccccceeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCeeeeecccccccCCCccccccCeEEEEEECCeEeecCCCceeeeCCeeEEEEEeeeccCCCCCCceEEEEE
Q 012447 170 LFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRL 249 (463)
Q Consensus 170 ~FkQ~i~dG~QvE~pd~Wl~~~~pwe~~r~~~~~~V~f~G~~~~~~~g~~~w~~~~~V~av~yD~pi~Gy~~~~vn~LRL 249 (463)
+|+|+|.+|||+|.||+||+.|||||+.|++..+||+|+|+|+..++| .+|.+++.|.|+|||+|||||+|++||||||
T Consensus 166 iF~QkI~~g~Q~E~~ddWL~~gnPWE~~R~e~~lPV~FyGkV~~~~~g-~kWid~q~V~A~~YD~PvPGyk~n~vntlRL 244 (843)
T KOG2099|consen 166 IFKQKITDGWQVEEPDDWLRYGNPWEKARPEVMLPVHFYGKVEHTPDG-SKWIDTQVVLAMPYDTPVPGYKNNTVNTLRL 244 (843)
T ss_pred hHHHHhcCCccccchHHHHHcCCchhhcCcceEeEEEEEEEEEeCCCc-ceeecceeEEEeccCCCCCCcccCcceeeee
Confidence 999999999999999999999999999999999999999999987778 5699999999999999999999999999999
Q ss_pred EeeecCcccccccccCCcchhHHHhhhhhhhcccccccCCCCccccchhhhhhhhhhhhccHHHHHHHHHHhcCC-----
Q 012447 250 WDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324 (463)
Q Consensus 250 W~a~v~~~~f~l~~~~~g~y~~a~~~~~~~e~It~~LYp~Ds~~~Gk~lRLkQeyfl~sa~lqdiir~~~~~~~~----- 324 (463)
|+|+ ++++|||..||.|+|.+|+..++.+|+||+||||+|+..+||+||||||||+|+||||||||||+...++
T Consensus 245 Wsak-a~~df~l~~fN~Gdy~~av~~~~~AenI~~VLYPnDnf~eGKeLRLKQqyf~caAtLqDIirRFk~sk~~~r~~~ 323 (843)
T KOG2099|consen 245 WSAK-APNDFDLKDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQQYFLCAATLQDIIRRFKSSKFGCREPV 323 (843)
T ss_pred eccC-CCCCCCHHhccCchHHHHHHHHHhhhhceEEecCCCccccchhhhhhhhhhhhHHHHHHHHHHHhhcccCccccc
Confidence 9999 7789999999999999999999999999999999999999999999999999999999999999865431
Q ss_pred -CcccCCCCceeEeecCCcccchHHHHHHHHHHhcCCCHHHHHHhhccceEEeeccccccccccccHHHHHHhchHHHHH
Q 012447 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEI 403 (463)
Q Consensus 325 -~~l~~l~~~~~ihlNDtHPalai~ELmR~L~de~gl~wd~A~~i~~~~~~yTnHT~lpealE~wp~~l~~~llpr~~~I 403 (463)
..|+.||++++||||||||+||||||||+|||.+|++|++||+||.|||+|||||+||||||+||++||+++||||+||
T Consensus 324 ~~~~~~FPdkVAiQlNDTHPtLaIpELmRiLvD~e~l~W~~AWdit~kT~AYTNHTVlpEALErWp~~L~e~LLPRHleI 403 (843)
T KOG2099|consen 324 RTNFEEFPDKVAIQLNDTHPTLAIPELMRILVDLEGLDWDKAWDITQKTCAYTNHTVLPEALERWPVSLMEKLLPRHLEI 403 (843)
T ss_pred ccchhhCcHhheeeccCCCccccHHHHHHHHHhcccCCHHHHHHHhhhheeeccccccHHHHHHhhHHHHHHhhhHHHHH
Confidence 2399999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhhhcccccccCCCCCCeeehhHHhHhhCCccceeccccc
Q 012447 404 IEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVRGLFLELL 462 (463)
Q Consensus 404 I~eIn~rf~~~~~~~~~~d~~~~~~l~ii~~~~~~~~v~Ma~Lai~~S~~vNGVs~l~~ 462 (463)
||+||.+|++.+.++||.|.|++++||||+++++..++|||||||+|||+|||||+||+
T Consensus 404 Iy~In~~~l~~i~~~fp~D~drlrrmsiiee~~~~k~i~MA~L~ivgsHaVNGVa~iHS 462 (843)
T KOG2099|consen 404 IYEINQRFLQTVAAKFPGDVDRLRRMSIIEENSPEKRINMAHLCIVGSHAVNGVAEIHS 462 (843)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHhhhhhhhcCCccceeeeeeeeeecccccccHHHHHH
Confidence 99999999999999999999999999999983221299999999999999999999996
No 2
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=100.00 E-value=1.2e-147 Score=1208.16 Aligned_cols=422 Identities=53% Similarity=0.881 Sum_probs=410.8
Q ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCceEEEEechhcccchhHHHhhcCCcHHHHHH
Q 012447 36 ISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYAD 115 (463)
Q Consensus 36 ~~~~l~~~~~~~~~~at~~~~y~Ala~~vrd~l~~~w~~t~~~~~~~~~k~vyYlSmEFl~Gr~L~nnL~NLgl~~~~~e 115 (463)
|.+||++++|+++.+||+.++|.|||.+|||+++++|.+|++.|.+.++|+||||||||||||+|.|||+|||+++++++
T Consensus 1 ~~~~l~~~~~~~~~~a~~~~~y~ala~~vrd~l~~~w~~t~~~~~~~~~k~vyYlS~EfL~Gr~l~nnl~nlgl~~~~~~ 80 (794)
T TIGR02093 1 ILYHLEYTYGKTIDDATPRDLYTALAKAVRDRLVDRWLETQEKYRDNNQKQVYYLSAEFLMGRLLGNNLLNLGLYDEVKE 80 (794)
T ss_pred CHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEEehhhhcchHHHHHHHhCCCHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHhhhcccCCCCCCcccchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCCeeeeecccccccCCCcc
Q 012447 116 ALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWE 195 (463)
Q Consensus 116 ~l~~lg~~l~~i~~~E~D~~LgnGGLGrLAacfldS~AtLglP~~G~GirY~yG~FkQ~i~dG~QvE~pd~Wl~~~~pwe 195 (463)
+|+++|+|+++|+++|+||||||||||||||||||||||||+|++||||||+||||+|+|.||||+|.||+|+..++|||
T Consensus 81 ~l~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~Atl~~P~~GyGirY~yG~F~Q~I~dG~Q~E~pd~Wl~~~~pwe 160 (794)
T TIGR02093 81 ALRELGLDLEEILEIENDAGLGNGGLGRLAACFLDSLATLGLPATGYGIRYEYGLFKQKIVDGWQVELPDDWLRYGNPWE 160 (794)
T ss_pred HHHHhCCCHHHHHhcCCCCCCCCCchHHHHHHHHHHHHhCCCCeEEEEeeecCCceEEEEECCEEEEcCCCcCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCeEEEEEECCeEeecCC-Ccee--eeCCeeEEEEEeeeccCCCCCCceEEEEEEeeecCcccccccccCCcchhHH
Q 012447 196 VVRHDVVFPVRFFGSVMVNPN-GTRK--WVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESA 272 (463)
Q Consensus 196 ~~r~~~~~~V~f~G~~~~~~~-g~~~--w~~~~~V~av~yD~pi~Gy~~~~vn~LRLW~a~v~~~~f~l~~~~~g~y~~a 272 (463)
++|++.+++|+|+|+++...+ |+.+ |++++.|+|||||+|||||+|+++|+||||+++ +.+.|||..||.|+|.+|
T Consensus 161 ~~r~~~~~~V~f~G~v~~~~~~g~~~~~w~~~~~v~avpyD~pi~Gy~~~~vn~LRLW~a~-~~~~f~l~~fn~gdy~~a 239 (794)
T TIGR02093 161 IRRPDRSYEVRFGGRVELQPDSDRLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLRLWSAE-APEEFDLDAFNAGDYYEA 239 (794)
T ss_pred eecCCcEEEEEeCCEEeeeccCCcceeEeeCceEEEEeecceeecCCCCCceEEEEEEEec-CccccCHhhccCccHhhh
Confidence 999999999999999975444 6555 999999999999999999999999999999999 677899999999999999
Q ss_pred HhhhhhhhcccccccCCCCccccchhhhhhhhhhhhccHHHHHHHHHHhcCCCcccCCCCceeEeecCCcccchHHHHHH
Q 012447 273 AQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMR 352 (463)
Q Consensus 273 ~~~~~~~e~It~~LYp~Ds~~~Gk~lRLkQeyfl~sa~lqdiir~~~~~~~~~~l~~l~~~~~ihlNDtHPalai~ELmR 352 (463)
+++++.+|+||++|||+||+++||+|||||||||||||+|||||+|++.+ .+|++||++++|||||||||||||||||
T Consensus 240 ~~~~~~~e~It~vLYp~D~~~~Gk~lRLkQeyfl~~aglqdiir~~~~~~--~~l~~l~~~~~ihlNDtHpalai~ElmR 317 (794)
T TIGR02093 240 VEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIRRHLETH--PDLSDFPKKVAIQLNDTHPALAIPELMR 317 (794)
T ss_pred hhChhhcCccccCCcCCCCccchHHHHHHHHHHhhhhHHHHHHHHHHHhC--CChhhCCcceEEEecCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 5899999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHhhccceEEeeccccccccccccHHHHHHhchHHHHHHHHHHHHHHHHHHhhCCCChhhhcccccc
Q 012447 353 LLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCIL 432 (463)
Q Consensus 353 ~L~de~gl~wd~A~~i~~~~~~yTnHT~lpealE~wp~~l~~~llpr~~~II~eIn~rf~~~~~~~~~~d~~~~~~l~ii 432 (463)
+|||++|++||+||+||+++|+||||||||||||+||++||+++||||++||++||+||++.++.++|+|++++.+||||
T Consensus 318 ~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~wp~~l~~~~Lpr~~~iI~~In~~fl~~~~~~~p~d~~~~~~~sii 397 (794)
T TIGR02093 318 LLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFQKLLPRHLEIIYEINRRFLAELAAKGPGDEAKIRRMSII 397 (794)
T ss_pred HHHHhcCCCHHHHHHHHHhheecccCCCChHHhCCcCHHHHHHHHhHHHHHHHHHhHHHHHHHHHhCCCcHHHHhheeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-eeehhHHhHhhCCccceeccccc
Q 012447 433 DNNPKKP-VVRMANLCVVSAHTVRGLFLELL 462 (463)
Q Consensus 433 ~~~~~~~-~v~Ma~Lai~~S~~vNGVs~l~~ 462 (463)
++ +++ +||||+|||++||+|||||+||.
T Consensus 398 ~~--~~~~~v~Ma~LAi~~S~~vNGVS~lH~ 426 (794)
T TIGR02093 398 EE--GQSKRVRMANLAIVGSHSVNGVAALHT 426 (794)
T ss_pred ec--CCCCEEehHHHHHHhhhhhhhhHHHHH
Confidence 98 444 89999999999999999999995
No 3
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=3.9e-146 Score=1199.73 Aligned_cols=425 Identities=53% Similarity=0.885 Sum_probs=413.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCceEEEEechhcccchhHHHhhcCCcHHH
Q 012447 33 ASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNA 112 (463)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~at~~~~y~Ala~~vrd~l~~~w~~t~~~~~~~~~k~vyYlSmEFl~Gr~L~nnL~NLgl~~~ 112 (463)
++.|.+||++++|+++.+||+.++|.|||.+|||+++++|.+|++.+.+.++|+||||||||||||+|.|||+|||++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~a~~~~~y~al~~~vrd~l~~~w~~t~~~~~~~~~k~vyYlS~EfL~Gr~L~nnl~nLgl~~~ 80 (797)
T cd04300 1 KKAIVDHLEYTLGKDPEEATDRDLYQALAYAVRDRLVERWNRTQQYYYDKDAKRVYYLSLEFLMGRLLGNNLLNLGLYDE 80 (797)
T ss_pred ChHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEchhhhcchHHHHHHHhCCcHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHhhhcccCCCCCCcccchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCCeeeeecccccccCC
Q 012447 113 YADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFS 192 (463)
Q Consensus 113 ~~e~l~~lg~~l~~i~~~E~D~~LgnGGLGrLAacfldS~AtLglP~~G~GirY~yG~FkQ~i~dG~QvE~pd~Wl~~~~ 192 (463)
++++|+++|+|+++|+++|+||||||||||||||||||||||||+|++||||||+||||+|+|++|||+|.||+|+..++
T Consensus 81 ~~~~L~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~AtLglP~~G~GirY~yG~F~Q~i~~G~Q~E~pd~Wl~~~~ 160 (797)
T cd04300 81 VREALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDSLATLGLPGYGYGIRYEYGLFKQKIVDGYQVELPDNWLRYGN 160 (797)
T ss_pred HHHHHHHhCCCHHHHHhcCCCCCCCCCCcchhHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEEEecCCCccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCeEEEEEECCeEeecCC-Ccee--eeCCeeEEEEEeeeccCCCCCCceEEEEEEeeecCcccccccccCCcch
Q 012447 193 PWEVVRHDVVFPVRFFGSVMVNPN-GTRK--WVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269 (463)
Q Consensus 193 pwe~~r~~~~~~V~f~G~~~~~~~-g~~~--w~~~~~V~av~yD~pi~Gy~~~~vn~LRLW~a~v~~~~f~l~~~~~g~y 269 (463)
|||++|++.+++|+|+|+++...+ |+.+ |++++.|+|||||+|||||+|+++|+||||+++ +...||++.||.|+|
T Consensus 161 pwe~~r~~~~~~V~f~G~~~~~~~~G~~~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LRLW~a~-~~~~~dl~~fn~gdy 239 (797)
T cd04300 161 PWEIRRPDVAVPVRFGGRVEHYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSAE-ASEEFDLDAFNRGDY 239 (797)
T ss_pred CceEecCCcEEEEEECCEEEEeecCCcceeeecCcceEEeeecceeecCCCCCceEEEEEEEee-CCCCcCHHHhcCCch
Confidence 999999999999999999975443 7555 999999999999999999999999999999999 677899999999999
Q ss_pred hHHHhhhhhhhcccccccCCCCccccchhhhhhhhhhhhccHHHHHHHHHHhcCCCcccCCCCceeEeecCCcccchHHH
Q 012447 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPE 349 (463)
Q Consensus 270 ~~a~~~~~~~e~It~~LYp~Ds~~~Gk~lRLkQeyfl~sa~lqdiir~~~~~~~~~~l~~l~~~~~ihlNDtHPalai~E 349 (463)
.+|+++++.+|+||++|||+||+++||+|||||||||||||+|||||+|++.+ .++++||++++||||||||||||||
T Consensus 240 ~~a~~~~~~~~~It~~LYp~Ds~~~Gk~lRL~Qeyfl~sag~qdilr~~~~~~--~~~~~l~~~~~ihlNDtHpalai~E 317 (797)
T cd04300 240 IRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKTH--GPLSEFPDKVAIQLNDTHPALAIPE 317 (797)
T ss_pred hhHHhhHHHhhhhhcccCCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHhC--CChhhCCCceEEEecCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988 4899999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHhhccceEEeeccccccccccccHHHHHHhchHHHHHHHHHHHHHHHHHHhhCCCChhhhccc
Q 012447 350 LMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSM 429 (463)
Q Consensus 350 LmR~L~de~gl~wd~A~~i~~~~~~yTnHT~lpealE~wp~~l~~~llpr~~~II~eIn~rf~~~~~~~~~~d~~~~~~l 429 (463)
|||+|||++|++||+||+||++||+||||||||||||+||++||+++||||++||++||+||+..++.++|.|.+++.+|
T Consensus 318 lmR~L~d~~gl~w~~Aw~i~~~~~~yTnHT~lpealE~wp~~l~~~~lpr~~~II~~In~~~~~~~~~~~~~~~~~~~~l 397 (797)
T cd04300 318 LMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFERLLPRHLEIIYEINRRFLEEVRAKYPGDEDRIRRM 397 (797)
T ss_pred HHHHHHHhcCCCHHHHHHHHHhheeeecCCCchHHhCccCHHHHHHHChHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCC-eeehhHHhHhhCCccceeccccc
Q 012447 430 CILDNNPKKP-VVRMANLCVVSAHTVRGLFLELL 462 (463)
Q Consensus 430 ~ii~~~~~~~-~v~Ma~Lai~~S~~vNGVs~l~~ 462 (463)
+||++ +++ +||||+|||++||+|||||+||.
T Consensus 398 ~ii~~--~~~~~v~Ma~LAi~~S~~vNGVS~lH~ 429 (797)
T cd04300 398 SIIEE--GGEKQVRMAHLAIVGSHSVNGVAALHS 429 (797)
T ss_pred ccccc--CCCCEEehHHHHHhcCcchhhhHHHHH
Confidence 99987 433 89999999999999999999995
No 4
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=100.00 E-value=5.5e-146 Score=1194.01 Aligned_cols=424 Identities=40% Similarity=0.663 Sum_probs=412.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCceEEEEechhcccchhHHHhhc
Q 012447 27 NEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGS 106 (463)
Q Consensus 27 ~~~~~~~~~~~~~l~~~~~~~~~~at~~~~y~Ala~~vrd~l~~~w~~t~~~~~~~~~k~vyYlSmEFl~Gr~L~nnL~N 106 (463)
.++++|++.|.+||++++|+++.+||+.++|.|||.+|||+++++ ++.|.+.++|+||||||||||||+|.|||+|
T Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~ala~~vrd~l~~~----~~~~~~~~~k~vyYlS~EfL~Gr~l~nnl~n 80 (798)
T PRK14985 5 FNKKQFQAALTRQWQRFGLNSAAEMTPRQWWQAVSAALAELLRAQ----PAAKPVANQRHVNYISMEFLIGRLTGNNLLN 80 (798)
T ss_pred CCHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHH----HHHHhhcCCcEEEEechhhhccHHHHHHHHh
Confidence 468899999999999999999999999999999999999999998 5667788899999999999999999999999
Q ss_pred CCcHHHHHHHHHHcCCCHHHHHhhhcccCCCCCCcccchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCCeeeeeccc
Q 012447 107 LDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAED 186 (463)
Q Consensus 107 Lgl~~~~~e~l~~lg~~l~~i~~~E~D~~LgnGGLGrLAacfldS~AtLglP~~G~GirY~yG~FkQ~i~dG~QvE~pd~ 186 (463)
||++++++++|+++|+|+++|+++|+||||||||||||||||||||||||+|++||||||+||||+|+|+||+|+|.||.
T Consensus 81 lgl~~~~~~al~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~AtL~lP~~GyGirY~yG~F~Q~I~dG~Q~E~pd~ 160 (798)
T PRK14985 81 LGWYDDVQDVLKAYDINLTDLLEEETDPALGNGGLGRLAACFLDSMATVGQPATGYGLNYQYGLFRQSFVDGKQVEAPDD 160 (798)
T ss_pred cCCHHHHHHHHHHcCCCHHHHhccCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEeccCCCCeEEEEECCeEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccccCeEEEEEECCeEeecCCCceeeeCCeeEEEEEeeeccCCCCCCceEEEEEEeeecCcccccccccCC
Q 012447 187 WLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFND 266 (463)
Q Consensus 187 Wl~~~~pwe~~r~~~~~~V~f~G~~~~~~~g~~~w~~~~~V~av~yD~pi~Gy~~~~vn~LRLW~a~v~~~~f~l~~~~~ 266 (463)
|+..++||+++|++..++|+|+|+++.. +|+..|++++.|+|||||+|||||+|+++|+||||+++ +..+|||..||.
T Consensus 161 Wl~~~~pwe~~r~~~~~~V~f~G~v~~~-~G~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LRLW~a~-~~~~~~l~~fn~ 238 (798)
T PRK14985 161 WHRDSYPWFRHNEALDVQVGIGGKVTKQ-DGRERWEPAFTITGEAWDLPVVGYRNGVAQPLRLWQAT-HAHPFDLTKFND 238 (798)
T ss_pred cccCCCCceecCCCceEEEeeCCEEEee-CCcEEEECCEEEEEEeccccccCCCCCceEEEEEeEcC-CCCccCHHHcCC
Confidence 9999999999999999999999999754 78778999999999999999999999999999999999 455999999999
Q ss_pred cchhHHHhhhhhhhcccccccCCCCccccchhhhhhhhhhhhccHHHHHHHHHHhcCCCcccCCCCceeEeecCCcccch
Q 012447 267 GQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLA 346 (463)
Q Consensus 267 g~y~~a~~~~~~~e~It~~LYp~Ds~~~Gk~lRLkQeyfl~sa~lqdiir~~~~~~~~~~l~~l~~~~~ihlNDtHPala 346 (463)
|+|.+|+++++.+|+||++|||+|++++||+|||||||||||||+|||||+|++.+ ++|++||++++|||||||||||
T Consensus 239 gdy~~a~en~~~~e~It~~LYp~D~~~~Gk~lRLkQEyfl~sa~vqdilr~~~~~~--~~l~~l~~~~~ihlNDtHpala 316 (798)
T PRK14985 239 GDFLRAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHLAG--RKLHELPDYEVIQLNDTHPTIA 316 (798)
T ss_pred cchhhccccchhhcchhceecCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChhhCCCCcEEEecCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999876 6899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHhhccceEEeeccccccccccccHHHHHHhchHHHHHHHHHHHHHHHHHHhhCCCChhhh
Q 012447 347 IPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKI 426 (463)
Q Consensus 347 i~ELmR~L~de~gl~wd~A~~i~~~~~~yTnHT~lpealE~wp~~l~~~llpr~~~II~eIn~rf~~~~~~~~~~d~~~~ 426 (463)
||||||+|||++|++||+||+||++||+||||||||||||+||++||+++||||++||++||+||++.++..+|.+.+++
T Consensus 317 i~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~w~~~l~~~~Lpr~~~ii~~in~~fl~~~~~~~~~d~~~~ 396 (798)
T PRK14985 317 IPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDEKLVKSLLPRHMQIIKEINTRFKTLVEKTWPGDKKVW 396 (798)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHheeeecCCCChhhhCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCcHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCeeehhHHhHhhCCccceeccccc
Q 012447 427 PSMCILDNNPKKPVVRMANLCVVSAHTVRGLFLELL 462 (463)
Q Consensus 427 ~~l~ii~~~~~~~~v~Ma~Lai~~S~~vNGVs~l~~ 462 (463)
.+||||++ ++||||+|||++||+|||||+||.
T Consensus 397 ~~~sii~~----~~v~Ma~LAi~~S~~vNGVS~lH~ 428 (798)
T PRK14985 397 AKLAVVHD----KQVRMANLCVVSGFAVNGVAALHS 428 (798)
T ss_pred hhhhhccC----CeeehHHHHHHhcchhHhhHHHHh
Confidence 99999987 499999999999999999999996
No 5
>PRK14986 glycogen phosphorylase; Provisional
Probab=100.00 E-value=5.3e-145 Score=1189.79 Aligned_cols=437 Identities=42% Similarity=0.725 Sum_probs=423.0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCceEEEEechhcccc
Q 012447 19 PAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGR 98 (463)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~at~~~~y~Ala~~vrd~l~~~w~~t~~~~~~~~~k~vyYlSmEFl~Gr 98 (463)
|-+-..+.+++++|+++|.+||++++|+++++||+.++|.|||.+|||+++++|.+|++.|.++++|+||||||||||||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~ala~~vrd~l~~~w~~t~~~~~~~~~k~vyYlS~EfL~Gr 83 (815)
T PRK14986 4 PFTYASPTLSVEALKHSIAYKLMFTIGKDPVIANKHEWLNATLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGR 83 (815)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcEEEEEchhhhccH
Confidence 44545566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhcCCcHHHHHHHHHHcCCCHHHHHhhhcccCCCCCCcccchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCC
Q 012447 99 TLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQ 178 (463)
Q Consensus 99 ~L~nnL~NLgl~~~~~e~l~~lg~~l~~i~~~E~D~~LgnGGLGrLAacfldS~AtLglP~~G~GirY~yG~FkQ~i~dG 178 (463)
+|.|||+|||++++++++|+++|+|+++|+++|+||||||||||||||||||||||||+|++||||||+||||+|+|.||
T Consensus 84 ~l~nnl~nlg~~~~~~~al~~lg~~l~~l~~~E~Da~LGnGGLGrLAac~ldS~A~LglP~~G~Gi~Y~yG~F~Q~I~dG 163 (815)
T PRK14986 84 TLSNALLSLGIYDDVQGALEAMGLDLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNG 163 (815)
T ss_pred HHHHHHHhcCcHHHHHHHHHHcCCCHHHHHhcCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecccccccCCCccccccCeEEEEEECCeEeecCCCc-eeeeCCeeEEEEEeeeccCCCCCCceEEEEEEeeecCcc
Q 012447 179 GQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGT-RKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAE 257 (463)
Q Consensus 179 ~QvE~pd~Wl~~~~pwe~~r~~~~~~V~f~G~~~~~~~g~-~~w~~~~~V~av~yD~pi~Gy~~~~vn~LRLW~a~v~~~ 257 (463)
||+|.||+|+..++||+++|++.+++|+|+|+++.. |. .+|+++++|+|||||+|||||+|+++|+||||+++ +.+
T Consensus 164 ~Q~E~pd~w~~~~~pwe~~r~~~~~~V~f~g~~~~~--g~~~~w~~~~~v~avpyD~pipgy~t~~vn~lRLW~a~-~~~ 240 (815)
T PRK14986 164 RQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQE--GKKTRWIETEEILAVAYDQIIPGYDTDATNTLRLWSAQ-ASS 240 (815)
T ss_pred EEEEcCCCccCCCCceeEecCCcEEEEEeCCEEEec--CceeEeeCCeeEEEEeCCccccCCCCCceEEEEEEEee-cCc
Confidence 999999999999999999999999999999999753 63 33999999999999999999999999999999999 677
Q ss_pred cccccccCCcchhHHHhhhhhhhcccccccCCCCccccchhhhhhhhhhhhccHHHHHHHHHHhcCCCcccCCCCceeEe
Q 012447 258 DFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQ 337 (463)
Q Consensus 258 ~f~l~~~~~g~y~~a~~~~~~~e~It~~LYp~Ds~~~Gk~lRLkQeyfl~sa~lqdiir~~~~~~~~~~l~~l~~~~~ih 337 (463)
+||+..||.|+|..|+.+++.+|+||++|||+|++++||+|||||||||||||+|||||+|++.+ .+|++||++++||
T Consensus 241 ~fd~~~fn~g~y~~a~~~~n~~e~Is~~LYp~D~~y~Gk~lRLkQEyfl~~agv~di~r~~~~~~--~~l~~l~~~v~ih 318 (815)
T PRK14986 241 EINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILSRHYQLH--KTYDNLADKIAIH 318 (815)
T ss_pred ccCHhhcccccHHHHhhccchhhccccccCCCCCCcccHHHHHHHHHHhhhHHHHHHHHHHHHhC--CCHhhCCcccEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999988 6899999999999
Q ss_pred ecCCcccchHHHHHHHHHHhcCCCHHHHHHhhccceEEeeccccccccccccHHHHHHhchHHHHHHHHHHHHHHHHHHh
Q 012447 338 LNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRS 417 (463)
Q Consensus 338 lNDtHPalai~ELmR~L~de~gl~wd~A~~i~~~~~~yTnHT~lpealE~wp~~l~~~llpr~~~II~eIn~rf~~~~~~ 417 (463)
||||||||+||||||+|||++|++|++||+||+++|+||||||||||||+||++||+++||||++||++||+||+..++.
T Consensus 319 lNDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnHT~lpealE~w~~~l~~~~lpr~l~Ii~eIn~~fl~~~~~ 398 (815)
T PRK14986 319 LNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYFLKTLQE 398 (815)
T ss_pred ecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecccCChHHhCcCCHHHHHHHccHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChhhhcccccccCCCCCC-eeehhHHhHhhCCccceeccccc
Q 012447 418 TRSDLESKIPSMCILDNNPKKP-VVRMANLCVVSAHTVRGLFLELL 462 (463)
Q Consensus 418 ~~~~d~~~~~~l~ii~~~~~~~-~v~Ma~Lai~~S~~vNGVs~l~~ 462 (463)
++|.|.+++.+||||++ +++ +||||+||+++||+|||||+||.
T Consensus 399 ~~~~~~~~~~~~sii~~--~~~~~v~Ma~LAl~~S~~vNGVS~lH~ 442 (815)
T PRK14986 399 QYPNDTDLLGRASIIDE--SNGRRVRMAWLAVVVSHKVNGVSELHS 442 (815)
T ss_pred hCCCcHHHHhhhhcccc--CCCCEEeeHHHHhhccchhhHHHHHHH
Confidence 99999999999999997 434 89999999999999999999995
No 6
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=100.00 E-value=2.5e-127 Score=1039.27 Aligned_cols=341 Identities=54% Similarity=0.928 Sum_probs=313.7
Q ss_pred HHHHcCCCHHHHHhhhcccCCCCCCcccchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCCeeeeecccccccCCCcc
Q 012447 116 ALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWE 195 (463)
Q Consensus 116 ~l~~lg~~l~~i~~~E~D~~LgnGGLGrLAacfldS~AtLglP~~G~GirY~yG~FkQ~i~dG~QvE~pd~Wl~~~~pwe 195 (463)
||++||+|+++|+++|+||||||||||||||||||||||||+|++||||||+||+|||+|.||+|+|.||+||..|+|||
T Consensus 1 Al~~lg~~~~~l~~~E~da~LGNGGLGRLAacfldSlAtl~~p~~GygirY~yG~F~Q~i~dG~QvE~pd~Wl~~g~pWe 80 (713)
T PF00343_consen 1 ALKELGFDLEELEEQEPDAGLGNGGLGRLAACFLDSLATLGIPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRYGNPWE 80 (713)
T ss_dssp HHHHTT--HHHHHTTS--EEESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEEETTEEEEEEEBTTTTG-TTS
T ss_pred ChhHhCCCHHHHHhhCcCccccCcccchhHHHHHHHHHhCCCCceEEEeeecCCCceeEeecCCcccCCCCccCCCCceE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCeEEEEEECCeEeecCCCcee-eeCCeeEEEEEeeeccCCCCCCceEEEEEEeeecCcccccccccCCcchhHHHh
Q 012447 196 VVRHDVVFPVRFFGSVMVNPNGTRK-WVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQ 274 (463)
Q Consensus 196 ~~r~~~~~~V~f~G~~~~~~~g~~~-w~~~~~V~av~yD~pi~Gy~~~~vn~LRLW~a~v~~~~f~l~~~~~g~y~~a~~ 274 (463)
++|++.+|+|+|+|+|+ +.+|+.. |+++++|+|||||+|||||+|++|||||||+|+ ++++|||..||.|+|.+|++
T Consensus 81 ~~r~~~~~~V~f~G~v~-~~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~vn~LRLw~a~-~~~~fd~~~fn~gdy~~a~~ 158 (713)
T PF00343_consen 81 IRRPDESYEVKFGGRVE-DDGGRKVRWEDGETVLAVPYDMPIPGYRTKTVNTLRLWSAE-PSEEFDLESFNRGDYIKAVE 158 (713)
T ss_dssp EEEGGGEEEEEESEEEE--EETTEEEEESCEEEEEEEEEEEEE-SSSS-EEEEEEEEEE-ESSSTTHHHHHTTCHHHHHH
T ss_pred EecCCceEEEeccceEE-ecCCCcccccCCeEEEEEecCceeecCCCCceEEEEEeccC-CCcccChhhcCCCcHHHHHH
Confidence 99999999999999998 4445544 999999999999999999999999999999999 89999999999999999999
Q ss_pred hhhhhhcccccccCCCCccccchhhhhhhhhhhhccHHHHHHHHHHhcCCCcccCCCCceeEeecCCcccchHHHHHHHH
Q 012447 275 LHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLL 354 (463)
Q Consensus 275 ~~~~~e~It~~LYp~Ds~~~Gk~lRLkQeyfl~sa~lqdiir~~~~~~~~~~l~~l~~~~~ihlNDtHPalai~ELmR~L 354 (463)
+++.+|+||+||||+||+++||+|||||||||||||+|||||+|++.+ .++++||++++||||||||||+||||||+|
T Consensus 159 ~~~~~e~is~vLYP~d~~~~Gk~LRLkQqyf~vsa~lqdiir~~~~~~--~~~~~~~~~~~ihlNdtHpa~ai~ElmR~L 236 (713)
T PF00343_consen 159 EKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKSH--GDLREFPDKVVIHLNDTHPAFAIPELMRIL 236 (713)
T ss_dssp HHHHHHGGGTBSS-SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCGGGHHHHEEEEEESSTTTTHHHHHHHHH
T ss_pred HHHHhhceeeecCCCCccccchhhhhhhHhhhhhhHHHHHHHHHHHhC--CChHHCCcceEEeecCCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 699999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHhhccceEEeeccccccccccccHHHHHHhchHHHHHHHHHHHHHHHHHHhhCCCChhhhcccccccC
Q 012447 355 MDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDN 434 (463)
Q Consensus 355 ~de~gl~wd~A~~i~~~~~~yTnHT~lpealE~wp~~l~~~llpr~~~II~eIn~rf~~~~~~~~~~d~~~~~~l~ii~~ 434 (463)
||++|++|++||+||+++|+||||||||||||+||++||+++||||+|||++||+||+..+..++|.|.+++.+|+|+++
T Consensus 237 ~de~gl~~~eA~eiv~~~~~fTnHT~vpealE~wp~~l~~~~Lpr~~~ii~ein~~f~~~~~~~~~~d~~~~~~l~ii~~ 316 (713)
T PF00343_consen 237 MDEEGLSWDEAWEIVRKTFAFTNHTPVPEALEKWPVDLFERYLPRHLEIIYEINRRFLDELRRKYPGDEDQIRRLSIIEE 316 (713)
T ss_dssp HHTT---HHHHHHHHHHHEEEEE--SSGGGS-EEEHHHHHHHSHHHHHHHHHHHHHHHHHHHHHSTT-HHHHHHHSSEET
T ss_pred HHHcCCCHHHHHHHHHhceeeeccccccccccccCHHHHHHHChHHHHHHHHHhHHHHHHHHHHhcCcchhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCC-eeehhHHhHhhCCccceeccccc
Q 012447 435 NPKKP-VVRMANLCVVSAHTVRGLFLELL 462 (463)
Q Consensus 435 ~~~~~-~v~Ma~Lai~~S~~vNGVs~l~~ 462 (463)
+++ +||||+||+++||+|||||+||.
T Consensus 317 --~~~~~~~Ma~LAl~~S~~vNGVS~LH~ 343 (713)
T PF00343_consen 317 --GNSKRFRMANLALRGSHSVNGVSKLHG 343 (713)
T ss_dssp --SSSCEEEHHHHHHHCESEEEESSHHHH
T ss_pred --cchhhcchhHHHHHhcccccchHHHHH
Confidence 434 99999999999999999999995
No 7
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9e-115 Score=942.63 Aligned_cols=382 Identities=46% Similarity=0.739 Sum_probs=363.2
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCceEEEEechhcccchhHHHhhcC
Q 012447 28 EPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSL 107 (463)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~at~~~~y~Ala~~vrd~l~~~w~~t~~~~~~~~~k~vyYlSmEFl~Gr~L~nnL~NL 107 (463)
+.++|+.+|..++.+..++++..||+++||.|++..||+.+...|.+|++.+...+.|+|||+|||||+||++.|||+|+
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~a~~~~v~~~~~~~~~~~~~~~~~~~~~~~yy~s~efL~grl~~~~l~n~ 84 (750)
T COG0058 5 RLEQLAYNLWWSLDTTAGKLFRDADPEDWYEALHNPVRELLAADWLRLNQLARDEDFKQVYYLSMEFLIGRLLGNNLWNL 84 (750)
T ss_pred cHHHHHHHHHHHHHHHhccChhhCCHHHHHHHhhHHHHHHHhcCHHHHHHhhcchhHHHHHHHHHHHHHHHhhhcchhhh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHcCCCHHHHHhhhcccCCCCCCcccchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCCeeeeecccc
Q 012447 108 DIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDW 187 (463)
Q Consensus 108 gl~~~~~e~l~~lg~~l~~i~~~E~D~~LgnGGLGrLAacfldS~AtLglP~~G~GirY~yG~FkQ~i~dG~QvE~pd~W 187 (463)
|+++.++++|+++|+++.|+.+.|+||++| ||||||||||||||||||+|++||||||+||||+|++.||||+|.||.|
T Consensus 85 g~~~~~~~~l~~~~~~~~e~~~~e~~p~lg-GGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w 163 (750)
T COG0058 85 GIYDDVQEALKELGYFLMEFGEHESDPGLG-GGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEW 163 (750)
T ss_pred cchHHHHhhHHhhhccHHHHhhcccCcccc-ccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhh
Confidence 999999999999999999999999999999 9999999999999999999999999999999999998899999999999
Q ss_pred cccCCCccccccCeEEEEEECCeEeecCCCceeeeCCeeEEEEEeeeccCCCCCCceEEEEEEeeecCcccccccccCCc
Q 012447 188 LEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDG 267 (463)
Q Consensus 188 l~~~~pwe~~r~~~~~~V~f~G~~~~~~~g~~~w~~~~~V~av~yD~pi~Gy~~~~vn~LRLW~a~v~~~~f~l~~~~~g 267 (463)
+..++||++.|+. + |+|||+||+||+| ++|+||||+++++..+|+|..||.|
T Consensus 164 ~~~~~pwe~~r~~------------------------~---a~~~d~~V~g~~~-~~~~lrlW~a~~~~~~~~l~~~n~~ 215 (750)
T COG0058 164 LKYGNPWEFLRDA------------------------E---GVPYDVPVPGYDN-RVVTLRLWQAQVGRVPLYLLDFNVG 215 (750)
T ss_pred hccCCcceeeccc------------------------C---CceeeeeEEeccC-cEEEEEEEEEecCccceEeecCCCc
Confidence 9999999998750 1 6899999999999 9999999999977768888888887
Q ss_pred chhHHHhhhhhhhcccccccCCCCccccchhhhhhhhhhhhccHHHHHHHHHHhcCCCcccCCCCceeEeecCCcccchH
Q 012447 268 QYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAI 347 (463)
Q Consensus 268 ~y~~a~~~~~~~e~It~~LYp~Ds~~~Gk~lRLkQeyfl~sa~lqdiir~~~~~~~~~~l~~l~~~~~ihlNDtHPalai 347 (463)
++++.+|+||++|||+|| ++|||+|||||||||+|||++++...++ +++.++ .||||||||||+
T Consensus 216 ------e~~~~~~~iT~~LYp~Ds----~elRl~Qeyfl~~agvq~I~~~~~~~~~--~~~~~~----~~lNdtHpa~~i 279 (750)
T COG0058 216 ------ENKNDARNITRVLYPGDS----KELRLKQEYFLGSAGVQDILARGHLEHH--DLDVLA----DHLNDTHPALAI 279 (750)
T ss_pred ------ccchhhhhHHhhcCCCCc----HHHHHhhhheeeeHHHHHHHHHhhhccc--cccchh----hhhcCCChhHhH
Confidence 478899999999999999 8999999999999999999999544441 566655 459999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHhhccceEEeeccccccccccccHHHHHHhchHHHHHHHHHHHHHHHHHHhhCCCChhhhc
Q 012447 348 PELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIP 427 (463)
Q Consensus 348 ~ELmR~L~de~gl~wd~A~~i~~~~~~yTnHT~lpealE~wp~~l~~~llpr~~~II~eIn~rf~~~~~~~~~~d~~~~~ 427 (463)
|||||+|+|++|++|++||++|+++|+||||||||||||+||++||+++||||++||++||.||+.+++..+++| ++.
T Consensus 280 ~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~lpr~~~ii~~in~~~l~~~~~~~~~~--~~~ 357 (750)
T COG0058 280 PELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKLLPRHLQIIYEINARFLPEVRLLYLGD--LIR 357 (750)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHHhhhhhhhHHHHHhhhhHHHHhhcccc--ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred ccccccCCCCCCeeehhHHhHhhCCccceeccccc
Q 012447 428 SMCILDNNPKKPVVRMANLCVVSAHTVRGLFLELL 462 (463)
Q Consensus 428 ~l~ii~~~~~~~~v~Ma~Lai~~S~~vNGVs~l~~ 462 (463)
++++|++ ||||+||+++||+|||||+||.
T Consensus 358 ~~~~i~~------v~Ma~lal~~S~~vNGVsklH~ 386 (750)
T COG0058 358 RGSPIEE------VNMAVLALVGSHSVNGVSKLHS 386 (750)
T ss_pred cCCcccc------eehhhhhhhhhhhhHhHHHHHH
Confidence 9999975 9999999999999999999996
No 8
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=2.1e-70 Score=593.58 Aligned_cols=273 Identities=22% Similarity=0.358 Sum_probs=239.1
Q ss_pred EEEEechhcccchhHHHhhcCCcHHHHHHHHHHcCCCHHHHHhhhcccCCCCCCcccchhhhHhhhhccCCCeEEEEecc
Q 012447 87 TYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRY 166 (463)
Q Consensus 87 vyYlSmEFl~Gr~L~nnL~NLgl~~~~~e~l~~lg~~l~~i~~~E~D~~LgnGGLGrLAacfldS~AtLglP~~G~GirY 166 (463)
|+||||||.+..+|+ +||||||||||||||||||||+|++||||+|
T Consensus 1 ~ayf~~E~g~~~~~p----------------------------------~ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y 46 (601)
T TIGR02094 1 VAYFSMEYGLHESLP----------------------------------IYSGGLGVLAGDHLKSASDLGLPLVAVGLLY 46 (601)
T ss_pred CeEEeeccccCCCCC----------------------------------ccCchHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 689999999999999 9999999999999999999999999999999
Q ss_pred CCcceEEEEe-CCeeeeecccccccCCCccccccCeEEEEEECCeEeecCCCceeeeCCeeEEEEEeeeccCCCCCCceE
Q 012447 167 RYGLFKQKIT-KQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTI 245 (463)
Q Consensus 167 ~yG~FkQ~i~-dG~QvE~pd~Wl~~~~pwe~~r~~~~~~V~f~G~~~~~~~g~~~w~~~~~V~av~yD~pi~Gy~~~~vn 245 (463)
+||||+|+|+ ||||+|.|++|+..+.||+.. .+.+|+ . ++||+||+|. ++
T Consensus 47 ~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~---------------~~~~g~-------~---~~~~v~i~g~----~~ 97 (601)
T TIGR02094 47 KQGYFRQRLDEDGWQQEAYPNNDFESLPIEKV---------------LDTDGK-------W---LKISVRIRGR----DV 97 (601)
T ss_pred CCCceeEEECCCCceeecCCccccCCCceEEE---------------ecCCCC-------e---EEEEEecCCc----EE
Confidence 9999999998 999999999999999999861 234554 2 5899999994 89
Q ss_pred EEEEEeeecCcccccccccCCcchhHHHhhhhhhhcccccccCCCCccccchhhhhhhhhhhhccHHHHHHHHHHhcCCC
Q 012447 246 SLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGR 325 (463)
Q Consensus 246 ~LRLW~a~v~~~~f~l~~~~~g~y~~a~~~~~~~e~It~~LYp~Ds~~~Gk~lRLkQeyfl~sa~lqdiir~~~~~~~~~ 325 (463)
++|+|+++++ .+++++||++.. ++...+|.||++|||+| +++|++||||||+||+|++ + +.+
T Consensus 98 ~~rlw~~~~~--~v~lylld~~~~----~n~~~~R~it~~LY~~D-----~~~R~~Qe~fl~~a~l~~l-~---~l~--- 159 (601)
T TIGR02094 98 YAKVWRVQVG--RVPLYLLDTNIP----ENSEDDRWITGRLYGGD-----KEMRIAQEIVLGIGGVRAL-R---ALG--- 159 (601)
T ss_pred EEEEEEEEeC--CCCEEEecCCCc----ccchhhcCccCCCCCCC-----HHHHHHHHHHHHHHHHHHH-H---HcC---
Confidence 9999999964 588899998873 46778999999999988 5789999999999999865 2 222
Q ss_pred cccCCCCceeEeecCCcccchHHHHHHHHHHhcCCCHHHHHHhhccceEEeeccccccccccccHHHHHHhchHHHHHHH
Q 012447 326 QWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIE 405 (463)
Q Consensus 326 ~l~~l~~~~~ihlNDtHPalai~ELmR~L~de~gl~wd~A~~i~~~~~~yTnHT~lpealE~wp~~l~~~llpr~~~II~ 405 (463)
-++.+||+||+||||+++||||+|+ +++++|++||++|+.+++||||||+|+|+|+||.++|+++||| ++++.
T Consensus 160 -----~~pdviH~ND~Htal~~~el~r~l~-~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~-~~~~~ 232 (601)
T TIGR02094 160 -----IDPDVYHLNEGHAAFVTLERIRELI-AQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGD-YAANL 232 (601)
T ss_pred -----CCceEEEeCCchHHHHHHHHHHHHH-HcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhh-hhhHh
Confidence 1789999999999999999999999 7899999999999999999999999999999999999999999 46666
Q ss_pred HHHHHHHHHHHhhCCCChhhhcccccccCCCCCCeeehhHHhHhhCCccceeccccc
Q 012447 406 EIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVRGLFLELL 462 (463)
Q Consensus 406 eIn~rf~~~~~~~~~~d~~~~~~l~ii~~~~~~~~v~Ma~Lai~~S~~vNGVs~l~~ 462 (463)
.||.+++..+...++ + ..++|||+++||++|++|||||++|.
T Consensus 233 gl~~~~~~~~~~~~~-------------~--~~~~vnm~~lai~~S~~vngVS~lh~ 274 (601)
T TIGR02094 233 GLPREQLLALGRENP-------------D--DPEPFNMTVLALRLSRIANGVSKLHG 274 (601)
T ss_pred CCCHHHHHhhhhhcc-------------C--ccCceeHHHHHHHhCCeeeeecHHHH
Confidence 777666544332222 1 12489999999999999999999995
No 9
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=100.00 E-value=1.4e-69 Score=598.61 Aligned_cols=277 Identities=25% Similarity=0.361 Sum_probs=244.6
Q ss_pred CceEEEEechhcccchhHHHhhcCCcHHHHHHHHHHcCCCHHHHHhhhcccCCCCCCcccchhhhHhhhhccCCCeEEEE
Q 012447 84 PKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYG 163 (463)
Q Consensus 84 ~k~vyYlSmEFl~Gr~L~nnL~NLgl~~~~~e~l~~lg~~l~~i~~~E~D~~LgnGGLGrLAacfldS~AtLglP~~G~G 163 (463)
.+.++||||||++..+|+ +||||||||||||||||||||+|++|||
T Consensus 85 ~~~~aYFs~E~gl~~~lp----------------------------------iYsGGLG~LAgd~lksasdLg~P~vgvG 130 (778)
T cd04299 85 PLVAAYFSMEFGLHESLP----------------------------------IYSGGLGILAGDHLKAASDLGLPLVGVG 130 (778)
T ss_pred CCeeEEeccccccCCCCC----------------------------------ccCchHHHHHHHHHHHHHhCCCCEEEEE
Confidence 455669999999999999 9999999999999999999999999999
Q ss_pred eccCCcceEEEEe-CCeeeeecccccccCCCccccccCeEEEEEECCeEeecCCCceeeeCCeeEEEEEeeeccCCCCCC
Q 012447 164 LRYRYGLFKQKIT-KQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTK 242 (463)
Q Consensus 164 irY~yG~FkQ~i~-dG~QvE~pd~Wl~~~~pwe~~r~~~~~~V~f~G~~~~~~~g~~~w~~~~~V~av~yD~pi~Gy~~~ 242 (463)
|+|+||||+|.|+ ||||+|.|+.|...+.||+.. .+.+|+ +.+++ +|++|+
T Consensus 131 llY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~---------------~~~~G~------~~~v~----v~l~g~--- 182 (778)
T cd04299 131 LLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPV---------------RDADGE------PVRVS----VELPGR--- 182 (778)
T ss_pred eCcCCCCeEEEECCCCceeecCCCcCCCCCceEEE---------------ecCCCC------eEEEE----EeeCCC---
Confidence 9999999999998 999999999999999999852 234454 23333 778997
Q ss_pred ceEEEEEEeeecCcccccccccCCcchhHHHhhhhhhhcccccccCCCCccccchhhhhhhhhhhhccHHHHHHHHHHhc
Q 012447 243 NTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERK 322 (463)
Q Consensus 243 ~vn~LRLW~a~v~~~~f~l~~~~~g~y~~a~~~~~~~e~It~~LYp~Ds~~~Gk~lRLkQeyfl~sa~lqdiir~~~~~~ 322 (463)
.+++|+|+++++ .+++++||++.+. |...+|.||++|||+| +++||+||||||+||++.+ +++ +
T Consensus 183 -~v~~rvw~~~vg--~v~lylLDtd~~~----n~~~~R~iT~~LYg~D-----~~~Rl~Qe~~Lg~agl~~L-r~l---g 246 (778)
T cd04299 183 -TVYARVWKAQVG--RVPLYLLDTDIPE----NSPDDRGITDRLYGGD-----QETRIQQEILLGIGGVRAL-RAL---G 246 (778)
T ss_pred -ceEEEEEEEEcC--CCCEEEecCCccc----cchhhcccccCCCCCc-----HHHHHHHHHHHHHHHHHHH-HHh---C
Confidence 679999999976 5889999999875 6677999999999998 4789999999999999855 443 2
Q ss_pred CCCcccCCCCceeEeecCCcccchHHHHHHHHHHhcCCCHHHHHHhhccceEEeeccccccccccccHHHHHHhchHHHH
Q 012447 323 SGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHME 402 (463)
Q Consensus 323 ~~~~l~~l~~~~~ihlNDtHPalai~ELmR~L~de~gl~wd~A~~i~~~~~~yTnHT~lpealE~wp~~l~~~llpr~~~ 402 (463)
+ ++.+||+||+||||+++||||+||+++|++|++||++|+.+++||||||+|+|||+||.++|+++||+|++
T Consensus 247 ----~----~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~ 318 (778)
T cd04299 247 ----I----KPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYAR 318 (778)
T ss_pred ----C----CCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHH
Confidence 1 58999999999999999999999998899999999999999999999999999999999999999998864
Q ss_pred HHHHHHHHHHHHHHhhCCCChhhhcccccccCCCCCCeeehhHHhHhhCCccceecccc
Q 012447 403 IIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVRGLFLEL 461 (463)
Q Consensus 403 II~eIn~rf~~~~~~~~~~d~~~~~~l~ii~~~~~~~~v~Ma~Lai~~S~~vNGVs~l~ 461 (463)
.+|.+.+.+..+++..+.+.+++|||+++||++|++|||||+||
T Consensus 319 ---------------~lgl~~~~~~~lg~e~~~~~~~~~nM~~laL~~S~~vNgVS~lH 362 (778)
T cd04299 319 ---------------ELGLSRDRFLALGRENPGDDPEPFNMAVLALRLAQRANGVSRLH 362 (778)
T ss_pred ---------------HcCCCHHHHhhhccccccCccCceeHHHHHHHhcCeeeeecHHH
Confidence 46888999999998764111248999999999999999999999
No 10
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.70 E-value=0.00029 Score=74.05 Aligned_cols=214 Identities=14% Similarity=0.092 Sum_probs=118.8
Q ss_pred hcccCCCCCCcccchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCCeeeeecccccccCCCccccccCeEEEEEECCe
Q 012447 131 EKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGS 210 (463)
Q Consensus 131 E~D~~LgnGGLGrLAacfldS~AtLglP~~G~GirY~yG~FkQ~i~dG~QvE~pd~Wl~~~~pwe~~r~~~~~~V~f~G~ 210 (463)
|..|-.-.||||...++.-++++.+|..+.-+.-+|....-+. .. .+. ....+.|.++++
T Consensus 8 E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~--------------~~-----~~~-~~~~~~~~~~~~ 67 (476)
T cd03791 8 EVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDEL--------------RG-----QLL-VLRLFGVPVGGR 67 (476)
T ss_pred cccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHh--------------cc-----CeE-EEEEEeeccCCc
Confidence 4445557999999999999999999999999998887652110 00 000 011112333332
Q ss_pred EeecCCCceeeeCCeeEEEEEeeeccCCCCCCceEEEEEEeeecCcccccccccCCcchhHHHhhhhhhhcccccccCCC
Q 012447 211 VMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGD 290 (463)
Q Consensus 211 ~~~~~~g~~~w~~~~~V~av~yD~pi~Gy~~~~vn~LRLW~a~v~~~~f~l~~~~~g~y~~a~~~~~~~e~It~~LYp~D 290 (463)
...+++|...++ .++++.++...+. .+......+...|++
T Consensus 68 ---------------------------------~~~~~~~~~~~~--gv~~~~l~~~~~~----~~~~~~~~~~~~~~~- 107 (476)
T cd03791 68 ---------------------------------PEYVGVFELPVD--GVPVYFLDNPDYF----DRPGLYDDSGYDYED- 107 (476)
T ss_pred ---------------------------------eeEEEEEEEEeC--CceEEEEcChHHc----CCCCCCCccCCCCcc-
Confidence 223344433322 1233333322222 111011123334442
Q ss_pred CccccchhhhhhhhhhhhccHHHHHHHHHHhcCCCcccCCCCceeEeecCCcccchHHHHHHHHHHhcCCCHHHHHHhhc
Q 012447 291 STEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITT 370 (463)
Q Consensus 291 s~~~Gk~lRLkQeyfl~sa~lqdiir~~~~~~~~~~l~~l~~~~~ihlNDtHPalai~ELmR~L~de~gl~wd~A~~i~~ 370 (463)
+..+..+|+.|++. ++++. + .++.+||.||.|.+++...+-+...+ . ...+
T Consensus 108 --------~~~~~~~f~~~~~~-~l~~~---~--------~~pDviH~hd~~t~~~~~~l~~~~~~---~------~~~~ 158 (476)
T cd03791 108 --------NAERFALFSRAALE-LLRRL---G--------WKPDIIHCHDWHTGLVPALLKEKYAD---P------FFKN 158 (476)
T ss_pred --------HHHHHHHHHHHHHH-HHHhc---C--------CCCcEEEECchHHHHHHHHHHHhhcc---c------cCCC
Confidence 33445788888874 22221 1 26789999999988887666444321 0 1135
Q ss_pred cceEEeeccccccccccccHHHHHHhchHHHHHHHHHHHHHHHHHHhhCCCChhhhcccccccCCCCCCeeehhHHhHhh
Q 012447 371 RTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVS 450 (463)
Q Consensus 371 ~~~~yTnHT~lpealE~wp~~l~~~llpr~~~II~eIn~rf~~~~~~~~~~d~~~~~~l~ii~~~~~~~~v~Ma~Lai~~ 450 (463)
..++||.|++.+.+ .+|...+..... .++....+.-.+ ....++|...++..
T Consensus 159 ~~~v~tiH~~~~~g--~~~~~~~~~~~~-----------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~ 210 (476)
T cd03791 159 IKTVFTIHNLAYQG--VFPLEALEDLGL-----------------------PWEELFHIDGLE---FYGQVNFLKAGIVY 210 (476)
T ss_pred CCEEEEeCCCCCCC--CCCHHHHHHcCC-----------------------Cccchhhhcccc---cCCcccHHHHHHHh
Confidence 57999999998776 466555544321 110011111111 12378999999999
Q ss_pred CCccceecccc
Q 012447 451 AHTVRGLFLEL 461 (463)
Q Consensus 451 S~~vNGVs~l~ 461 (463)
|..|+.||.-+
T Consensus 211 ad~v~~vS~~~ 221 (476)
T cd03791 211 ADAVTTVSPTY 221 (476)
T ss_pred cCcCeecCHhH
Confidence 99999999754
No 11
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.28 E-value=0.0025 Score=67.53 Aligned_cols=204 Identities=13% Similarity=0.080 Sum_probs=112.3
Q ss_pred cCCCCCCcccchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCCeeeeecccccccCCCccccccCeEEEEEECCeEee
Q 012447 134 AALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMV 213 (463)
Q Consensus 134 ~~LgnGGLGrLAacfldS~AtLglP~~G~GirY~yG~FkQ~i~dG~QvE~pd~Wl~~~~pwe~~r~~~~~~V~f~G~~~~ 213 (463)
|-.-.||||.-.++.-++++.+|.-+.-+.-+|....- .|... . .......|.++|+
T Consensus 12 P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~--------------~~~~~-----~-~~~~~~~~~~~~~--- 68 (473)
T TIGR02095 12 PFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIED--------------EVDDQ-----V-KVVELVDLSVGPR--- 68 (473)
T ss_pred cccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhh--------------hhccC-----e-EEEEEEEEeecCc---
Confidence 33568999999999999999999999998888875320 01000 0 0011122333322
Q ss_pred cCCCceeeeCCeeEEEEEeeeccCCCCCCceEEEEEEeeecCcccccccccCCcchhHHHhhhhhhhcccccccCCCCcc
Q 012447 214 NPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTE 293 (463)
Q Consensus 214 ~~~g~~~w~~~~~V~av~yD~pi~Gy~~~~vn~LRLW~a~v~~~~f~l~~~~~g~y~~a~~~~~~~e~It~~LYp~Ds~~ 293 (463)
..++++|...++ .++++.++...|.+ +. ..+|++|-.
T Consensus 69 ------------------------------~~~~~~~~~~~~--~v~~~~i~~~~~~~--------r~--~~~y~~~~~- 105 (473)
T TIGR02095 69 ------------------------------TLYVKVFEGVVE--GVPVYFIDNPSLFD--------RP--GGIYGDDYP- 105 (473)
T ss_pred ------------------------------eeEEEEEEEEEC--CceEEEEECHHHcC--------CC--CCCCCCCCC-
Confidence 334555655432 23444444333221 10 237874211
Q ss_pred ccchhhhhhhhhhhhccHHHHHHHHHHhcCCCcccCCCCceeEeecCCcccchHHHHHHHHHHhcCCCHHHHHHhhccce
Q 012447 294 EGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTV 373 (463)
Q Consensus 294 ~Gk~lRLkQeyfl~sa~lqdiir~~~~~~~~~~l~~l~~~~~ihlNDtHPalai~ELmR~L~de~gl~wd~A~~i~~~~~ 373 (463)
-.+.+-.||+.|+++ ++++ .+ .++.+||.||-|++++...+ +... +.. +..+
T Consensus 106 ----d~~~r~~~f~~a~~~-~~~~---~~--------~~~DiiH~hdw~~~~~~~~l-~~~~---~~~--------~~~~ 157 (473)
T TIGR02095 106 ----DNAERFAFFSRAAAE-LLSG---LG--------WQPDVVHAHDWHTALVPALL-KAVY---RPN--------PIKT 157 (473)
T ss_pred ----CHHHHHHHHHHHHHH-HHHh---cC--------CCCCEEEECCcHHHHHHHHH-Hhhc---cCC--------CCCE
Confidence 122234688888874 3332 11 25679999999998876644 2221 100 3568
Q ss_pred EEeeccccccccccccHHHHHHhchHHHHHHHHHHHHHHHHHHhhCCCChhhhcccccccCCCCCCeeehhHHhHhhCCc
Q 012447 374 AYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHT 453 (463)
Q Consensus 374 ~yTnHT~lpealE~wp~~l~~~llpr~~~II~eIn~rf~~~~~~~~~~d~~~~~~l~ii~~~~~~~~v~Ma~Lai~~S~~ 453 (463)
+||.|++...+ .+|...+..+ +.+.+.+. ..-.+. .+.++|...++..|..
T Consensus 158 v~TiH~~~~~g--~~~~~~~~~~-----------------------~~~~~~~~-~~~~~~---~~~~~~~k~~~~~ad~ 208 (473)
T TIGR02095 158 VFTIHNLAYQG--VFPADDFSEL-----------------------GLPPEYFH-MEGLEF---YGRVNFLKGGIVYADR 208 (473)
T ss_pred EEEcCCCccCC--cCCHHHHHHc-----------------------CCChHHcC-chhhhc---CCchHHHHHHHHhCCc
Confidence 99999987555 4665555431 11111111 110111 1267788888888888
Q ss_pred cceeccc
Q 012447 454 VRGLFLE 460 (463)
Q Consensus 454 vNGVs~l 460 (463)
|+.||.-
T Consensus 209 v~tVS~~ 215 (473)
T TIGR02095 209 VTTVSPT 215 (473)
T ss_pred CeecCHh
Confidence 8888864
No 12
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.25 E-value=0.00049 Score=67.66 Aligned_cols=211 Identities=14% Similarity=0.178 Sum_probs=109.2
Q ss_pred CCCCCcccchhhhHhhhhccCCCeEEEEeccCCcceEEEEeCCeeeeecccccccCCCccccccCeEEEEEECCeEeecC
Q 012447 136 LGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNP 215 (463)
Q Consensus 136 LgnGGLGrLAacfldS~AtLglP~~G~GirY~yG~FkQ~i~dG~QvE~pd~Wl~~~~pwe~~r~~~~~~V~f~G~~~~~~ 215 (463)
.-.||||..++..-++++.+|..+.-+--+| |..+....+...+. + +.+.+.|.
T Consensus 13 ~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y--~~~~~~~~~~~~~~--~-----------------~~~~~~~~----- 66 (245)
T PF08323_consen 13 AKVGGLGDVVGSLPKALAKQGHDVRVIMPKY--GFIDEEYFQLEPVR--R-----------------LSVPFGGP----- 66 (245)
T ss_dssp B-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T--HHHHHHCTTEEEEE--E-----------------ES-STTCE-----
T ss_pred cccCcHhHHHHHHHHHHHhcCCeEEEEEccc--hhhhhhhhcceEEE--E-----------------eccccccc-----
Confidence 5689999999999999999999998887777 32221110000000 0 00111110
Q ss_pred CCceeeeCCeeEEEEEeeeccCCCCCCceEEEEEEeeecCcccccccccCCcchhHHHhhhhhhhcccccccCCC-Cccc
Q 012447 216 NGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGD-STEE 294 (463)
Q Consensus 216 ~g~~~w~~~~~V~av~yD~pi~Gy~~~~vn~LRLW~a~v~~~~f~l~~~~~g~y~~a~~~~~~~e~It~~LYp~D-s~~~ 294 (463)
++.+. . ..+++|+.... .++.+.++...|.+ ...+|++. ..+.
T Consensus 67 --------------v~~~~-~--------~~~~v~~~~~~--~v~v~~i~~~~~f~-----------r~~iY~~~~~~~~ 110 (245)
T PF08323_consen 67 --------------VPVGV-W--------YEVRVYRYPVD--GVPVYFIDNPEYFD-----------RPGIYGDNGGDYP 110 (245)
T ss_dssp --------------EEEE-------------EEEEEEEET--TEEEEEEESHHHHG-----------SSSSSBSTSSBHT
T ss_pred --------------ccccc-c--------eEEEEEEEEcC--CccEEEecChhhcc-----------ccceeccCCCcch
Confidence 01110 0 23556665532 34554554444431 11288651 1111
Q ss_pred cchhhhhhhhhhhhccHHHHHHHHHHhcCCCcccCC-CCceeEeecCCcccchHHHHHHHHHHhcCCCHHHHHHhhccce
Q 012447 295 GKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEF-PSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTV 373 (463)
Q Consensus 295 Gk~lRLkQeyfl~sa~lqdiir~~~~~~~~~~l~~l-~~~~~ihlNDtHPalai~ELmR~L~de~gl~wd~A~~i~~~~~ 373 (463)
....|. .||+.|.+. + +..+ ..+.+||+||-|.+++.+.| |.. ...+..+ ....+
T Consensus 111 d~~~rf---~~fs~a~le-----~--------~~~l~~~pDIIH~hDW~tal~p~~l-k~~-----~~~~~~~--~~~~~ 166 (245)
T PF08323_consen 111 DNAERF---AFFSRAALE-----L--------LKKLGWKPDIIHCHDWHTALAPLYL-KER-----YQQDPFF--ANIPT 166 (245)
T ss_dssp THHHHH---HHHHHHHHH-----H--------HCTCT-S-SEEEEECGGGTTHHHHH-HHC-----CSS--------SEE
T ss_pred hHHHHH---HHHHHHHHH-----H--------HHhhCCCCCEEEecCchHHHHHHHh-ccc-----ccccccc--cccee
Confidence 123454 588888763 1 2222 26889999999999998776 222 1111222 25779
Q ss_pred EEeeccccccccccccHHHHHHhchHHHHHHHHHHHHHHHHHHhhCCCChhhhcccccccCCCCCCeeehhHHhHhhCCc
Q 012447 374 AYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHT 453 (463)
Q Consensus 374 ~yTnHT~lpealE~wp~~l~~~llpr~~~II~eIn~rf~~~~~~~~~~d~~~~~~l~ii~~~~~~~~v~Ma~Lai~~S~~ 453 (463)
+||-|.+.-.+ .+|.+.+ . .++.+.+.+..+.-.+. ++.++|-..+|..|.+
T Consensus 167 v~TIHN~~yqg--~~~~~~~-~----------------------~~gl~~~~~~~~~~~~~---~~~in~lk~gi~~AD~ 218 (245)
T PF08323_consen 167 VFTIHNLEYQG--IFPPEDL-K----------------------ALGLPDEYFQNLDEYEF---YGQINFLKAGIVYADK 218 (245)
T ss_dssp EEEESSTT-----EEEGGGG-G----------------------CTT-GGGGS-STTTTEE---TTEEEHHHHHHHHSSE
T ss_pred EEEEcccccCC--cCCHHHH-H----------------------HcCCCHHHhcccccccc---ccccCHHHHHHHhcCE
Confidence 99999965555 3343322 1 22344333333332322 2489999999999999
Q ss_pred cceeccc
Q 012447 454 VRGLFLE 460 (463)
Q Consensus 454 vNGVs~l 460 (463)
||=||.-
T Consensus 219 v~TVS~~ 225 (245)
T PF08323_consen 219 VTTVSPT 225 (245)
T ss_dssp EEESSHH
T ss_pred eeeCCHH
Confidence 9999964
No 13
>PF11897 DUF3417: Protein of unknown function (DUF3417); InterPro: IPR024517 This domain of unknown function is found at the N terminus of members of the glycogen phosphorylase family.
Probab=96.46 E-value=0.0014 Score=58.47 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHhhhccccCCceEEEEechhcccchh
Q 012447 54 EQAFFATAESVRDRLIQ--QWNETYHHFNKVDPKQTYYLSMEFLQGRTL 100 (463)
Q Consensus 54 ~~~y~Ala~~vrd~l~~--~w~~t~~~~~~~~~k~vyYlSmEFl~Gr~L 100 (463)
...|..+....+++|.. .|..+ ......+.|+||||||+++.+|
T Consensus 73 l~~~~~v~~~f~~Ym~~~~~W~~~---~~~~~~~~IAYFSmEfGlhesL 118 (118)
T PF11897_consen 73 LARYDRVYARFEEYMSQKPTWFQE---PGDTPNPPIAYFSMEFGLHESL 118 (118)
T ss_pred HHHHHHHHHHHHHHHcCCCccccC---CCCCCCCCEEEEcccccccccC
Confidence 34455555555666643 46555 2233568999999999999875
No 14
>PLN02939 transferase, transferring glycosyl groups
Probab=96.37 E-value=0.16 Score=59.42 Aligned_cols=78 Identities=9% Similarity=0.023 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCceEEEEechhcccchhHHHhhcCCcHHHHHHHHHHcCCCHHHHHhh
Q 012447 51 FEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQ 130 (463)
Q Consensus 51 at~~~~y~Ala~~vrd~l~~~w~~t~~~~~~~~~k~vyYlSmEFl~Gr~L~nnL~NLgl~~~~~e~l~~lg~~l~~i~~~ 130 (463)
....+.|..+...=-..+.......... ....+-+|-++|.|..+-
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~mkILfVasE~aP~--------------------------------- 494 (977)
T PLN02939 449 GRIREAYLSCKGKNEREAVENFLKLTLS-GTSSGLHIVHIAAEMAPV--------------------------------- 494 (977)
T ss_pred hhHHHHHHHHhcCchHHHHHHHHHhccC-CCCCCCEEEEEEcccccc---------------------------------
Confidence 3455666666655555555555544332 223568899999887432
Q ss_pred hcccCCCCCCcccchhhhHhhhhccCCCeEEEEeccC
Q 012447 131 EKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYR 167 (463)
Q Consensus 131 E~D~~LgnGGLGrLAacfldS~AtLglP~~G~GirY~ 167 (463)
.=.||||--++..=+.++.+|.-+.-+--+|.
T Consensus 495 -----aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 495 -----AKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred -----cccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 44899999999999999999998888877776
No 15
>PRK14098 glycogen synthase; Provisional
Probab=95.52 E-value=0.11 Score=56.20 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=66.6
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHhcCCCcccCCCCceeEeecCCcccchHHHHHHHHHHhcCCCHHHHHHhhccceEEee
Q 012447 298 LRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTN 377 (463)
Q Consensus 298 lRLkQeyfl~sa~lqdiir~~~~~~~~~~l~~l~~~~~ihlNDtHPalai~ELmR~L~de~gl~wd~A~~i~~~~~~yTn 377 (463)
.|+ .||+.|.+.- .++.+ .++.+||.||-|++++.+ +++....... .+ .+-.++||.
T Consensus 122 ~rf---~~f~~a~l~~----~~~~~--------~~pDiiH~hdw~t~l~~~-~l~~~~~~~~-----~~--~~~~~V~Ti 178 (489)
T PRK14098 122 EKV---IFFNVGVLET----LQRLG--------WKPDIIHCHDWYAGLVPL-LLKTVYADHE-----FF--KDIKTVLTI 178 (489)
T ss_pred HHH---HHHHHHHHHH----HHhcC--------CCCCEEEecCcHHHHHHH-HHHHHhhhcc-----cc--CCCCEEEEc
Confidence 565 6888888742 22211 256789999999998876 5544322111 11 134699999
Q ss_pred ccccccccccccHHHHHHhchHHHHHHHHHHHHHHHHHHhhCCCChhhhcccccccCCCCCCeeehhHHhHhhCCcccee
Q 012447 378 HTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVRGL 457 (463)
Q Consensus 378 HT~lpealE~wp~~l~~~llpr~~~II~eIn~rf~~~~~~~~~~d~~~~~~l~ii~~~~~~~~v~Ma~Lai~~S~~vNGV 457 (463)
|++...+ .||...+..++|..+. ..+.. ..+.+++-..++..|..|+.|
T Consensus 179 Hn~~~qg--~~~~~~~~~~~~~~~~------------------------~~~~~-----~~~~~n~lk~~i~~ad~VitV 227 (489)
T PRK14098 179 HNVYRQG--VLPFKVFQKLLPEEVC------------------------SGLHR-----EGDEVNMLYTGVEHADLLTTT 227 (489)
T ss_pred CCCcccC--CCCHHHHHHhCCHHhh------------------------hhhhh-----cCCcccHHHHHHHhcCcceee
Confidence 9986655 4777776665553210 01100 012578888888888888888
Q ss_pred ccc
Q 012447 458 FLE 460 (463)
Q Consensus 458 s~l 460 (463)
|.-
T Consensus 228 S~~ 230 (489)
T PRK14098 228 SPR 230 (489)
T ss_pred CHH
Confidence 863
No 16
>PRK00654 glgA glycogen synthase; Provisional
Probab=95.18 E-value=0.11 Score=55.47 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=30.3
Q ss_pred ccCCCCCCcccchhhhHhhhhccCCCeEEEEeccCC
Q 012447 133 DAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRY 168 (463)
Q Consensus 133 D~~LgnGGLGrLAacfldS~AtLglP~~G~GirY~y 168 (463)
.|-.-.||||.-.+..-++++.+|..+.-+.-+|..
T Consensus 11 ~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~ 46 (466)
T PRK00654 11 APLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPA 46 (466)
T ss_pred ccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence 344568999999999999999999999888877653
No 17
>PRK14099 glycogen synthase; Provisional
Probab=89.68 E-value=0.56 Score=50.75 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=28.8
Q ss_pred cccCCCCCCcccchhhhHhhhhccCCCeEEEEeccC
Q 012447 132 KDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYR 167 (463)
Q Consensus 132 ~D~~LgnGGLGrLAacfldS~AtLglP~~G~GirY~ 167 (463)
.-|=.=.||||--++..=++++.+|.-+.-+--+|+
T Consensus 13 ~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~ 48 (485)
T PRK14099 13 IFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYP 48 (485)
T ss_pred cccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 344466899999999999999999987777666664
No 18
>PF14474 RTC4: RTC4-like domain
Probab=52.41 E-value=7 Score=35.16 Aligned_cols=32 Identities=34% Similarity=0.630 Sum_probs=26.1
Q ss_pred cchHHHH-HHHHHHhcCCCHHHHHHhhccceEE
Q 012447 344 TLAIPEL-MRLLMDEEGLGWDEAWDITTRTVAY 375 (463)
Q Consensus 344 alai~EL-mR~L~de~gl~wd~A~~i~~~~~~y 375 (463)
.+.+||+ +|..+++.+++.++|++|.+.+.-|
T Consensus 85 ~VLvPEl~~~LI~EDm~v~~~~A~~il~eS~~~ 117 (124)
T PF14474_consen 85 YVLVPELAVRLIMEDMGVDDEEARQILEESSEY 117 (124)
T ss_pred HHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4789999 5666788999999999999887544
No 19
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=45.11 E-value=58 Score=35.90 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=29.6
Q ss_pred hhcccCCCCCCcccchhhhHhhhhccCCCeEEEEeccCCcce
Q 012447 130 QEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLF 171 (463)
Q Consensus 130 ~E~D~~LgnGGLGrLAacfldS~AtLglP~~G~GirY~yG~F 171 (463)
.|..|=.=.||||--.++.=+.+++.| ...--+.=.|+.+
T Consensus 8 ~E~~p~vK~GGLaDv~~alpk~L~~~g--~~v~v~lP~y~~~ 47 (487)
T COG0297 8 SEIFPFVKTGGLADVVGALPKALAKRG--VDVRVLLPSYPKV 47 (487)
T ss_pred eeecCccccCcHHHHHHHhHHHHHhcC--CeEEEEcCCchhh
Confidence 455566778999999999999999999 4444555556643
No 20
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=42.50 E-value=48 Score=28.60 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCCcccCCCCceeEeecCCc---ccchHHHHHHHHHHhcCCCHHHHHHhhccc
Q 012447 313 DMILRFKERKSGRQWSEFPSKVAVQLNDTH---PTLAIPELMRLLMDEEGLGWDEAWDITTRT 372 (463)
Q Consensus 313 diir~~~~~~~~~~l~~l~~~~~ihlNDtH---Palai~ELmR~L~de~gl~wd~A~~i~~~~ 372 (463)
++|....+.+ .++.||..-|. |++++.-|| ...|++.++|++.+++.
T Consensus 64 ~~i~~~~~~~---------~~VlVHC~~G~~RS~~v~~ayLm----~~~~~~~~~A~~~v~~~ 113 (133)
T PF00782_consen 64 EFIENAISEG---------GKVLVHCKAGLSRSGAVAAAYLM----KKNGMSLEEAIEYVRSR 113 (133)
T ss_dssp HHHHHHHHTT---------SEEEEEESSSSSHHHHHHHHHHH----HHHTSSHHHHHHHHHHH
T ss_pred Hhhhhhhccc---------ceeEEEeCCCcccchHHHHHHHH----HHcCCCHHHHHHHHHHH
Confidence 3566655544 58999999998 788877776 45799999999999763
No 21
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=41.88 E-value=32 Score=37.90 Aligned_cols=55 Identities=24% Similarity=0.457 Sum_probs=44.1
Q ss_pred CceeEeecCCcccchHHHHHHHHHHhcCCCHHHHHHhhccceEEeeccccccccccccHHHHHHhchHHHHHHHHH
Q 012447 332 SKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEI 407 (463)
Q Consensus 332 ~~~~ihlNDtHPalai~ELmR~L~de~gl~wd~A~~i~~~~~~yTnHT~lpealE~wp~~l~~~llpr~~~II~eI 407 (463)
+-..|=++|-|- +.+|.++|.... .....|+-|+|.|- .++| +.||++-||++.+
T Consensus 147 ~gDiIWVhDYhL-~L~P~mlR~~~~-------------~~~IgfFlHiPfPs------sEvf-r~lP~r~eIl~gl 201 (486)
T COG0380 147 PGDIIWVHDYHL-LLVPQMLRERIP-------------DAKIGFFLHIPFPS------SEVF-RCLPWREEILEGL 201 (486)
T ss_pred CCCEEEEEechh-hhhHHHHHHhCC-------------CceEEEEEeCCCCC------HHHH-hhCchHHHHHHHh
Confidence 446788999985 678999999885 56899999999764 4555 5699999999876
No 22
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=41.53 E-value=47 Score=28.68 Aligned_cols=38 Identities=32% Similarity=0.342 Sum_probs=29.1
Q ss_pred CCceeEeecCCc---ccchHHHHHHHHHHhcCCCHHHHHHhhccc
Q 012447 331 PSKVAVQLNDTH---PTLAIPELMRLLMDEEGLGWDEAWDITTRT 372 (463)
Q Consensus 331 ~~~~~ihlNDtH---Palai~ELmR~L~de~gl~wd~A~~i~~~~ 372 (463)
+.++.||.+.++ +++++..|| ...+++.++|++.+++.
T Consensus 81 ~~~vlVHC~~G~~Rs~~~~~~~l~----~~~~~~~~~a~~~vr~~ 121 (139)
T cd00127 81 GGKVLVHCLAGVSRSATLVIAYLM----KTLGLSLREAYEFVKSR 121 (139)
T ss_pred CCcEEEECCCCCchhHHHHHHHHH----HHcCCCHHHHHHHHHHH
Confidence 378999999998 445555554 45699999999998874
No 23
>PF14407 Frankia_peptide: Ribosomally synthesized peptide prototyped by Frankia Franean1_4349.
Probab=37.84 E-value=11 Score=30.31 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=32.8
Q ss_pred chhcccchhHHHhhcCCcHHHHHHHHHHcCCCHHHHHhhhcc
Q 012447 92 MEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKD 133 (463)
Q Consensus 92 mEFl~Gr~L~nnL~NLgl~~~~~e~l~~lg~~l~~i~~~E~D 133 (463)
||.+|||.....=.-.-+...-.++.++.+++.++|...|..
T Consensus 2 ~e~lIgrAv~D~~FRqqllad~~~A~~~Y~Lt~eeL~al~~~ 43 (61)
T PF14407_consen 2 VERLIGRAVTDEAFRQQLLADPEEACKEYDLTPEELQALERL 43 (61)
T ss_pred HHHHHHHHHcCHHHHHHHhcCHHHHHhhCCCCHHHHHHHHHH
Confidence 789999988765555455555667899999999999999853
No 24
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.47 E-value=34 Score=32.70 Aligned_cols=39 Identities=28% Similarity=0.400 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCHH----HHHHhhccceEEeeccccccccc
Q 012447 348 PELMRLLMDEEGLGWD----EAWDITTRTVAYTNHTVLPEALE 386 (463)
Q Consensus 348 ~ELmR~L~de~gl~wd----~A~~i~~~~~~yTnHT~lpealE 386 (463)
+.-+|-|++-.+++=. ++++|+-..|.||||.+.-|-+|
T Consensus 134 l~AarAl~~~~~lsA~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 134 LSAARALMENTELSAREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 3448889887788876 48999999999999999887665
No 25
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=31.11 E-value=75 Score=27.67 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=29.6
Q ss_pred CCceeEeecCCc---ccchHHHHHHHHHHhcCCCHHHHHHhhccce
Q 012447 331 PSKVAVQLNDTH---PTLAIPELMRLLMDEEGLGWDEAWDITTRTV 373 (463)
Q Consensus 331 ~~~~~ihlNDtH---Palai~ELmR~L~de~gl~wd~A~~i~~~~~ 373 (463)
++++.||...+. +++++.-|| ...|++.++|++.+++.-
T Consensus 78 ~~~VlVHC~~G~~RS~~v~~~yl~----~~~~~~~~~A~~~v~~~R 119 (138)
T smart00195 78 GGKVLVHCQAGVSRSATLIIAYLM----KYRNLSLNDAYDFVKDRR 119 (138)
T ss_pred CCeEEEECCCCCchHHHHHHHHHH----HHhCCCHHHHHHHHHHHC
Confidence 378999999986 445555554 457999999999997644
No 26
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=26.86 E-value=78 Score=34.06 Aligned_cols=55 Identities=18% Similarity=0.363 Sum_probs=39.5
Q ss_pred CceeEeecCCcccchHHHHHHHHHHhcCCCHHHHHHhhccceEEeeccccccccccccHHHHHHhchHHHHHHHHH
Q 012447 332 SKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEI 407 (463)
Q Consensus 332 ~~~~ihlNDtHPalai~ELmR~L~de~gl~wd~A~~i~~~~~~yTnHT~lpealE~wp~~l~~~llpr~~~II~eI 407 (463)
+...|+++|-|.. .+|.++|... .+.+++|.-|||.|.. -+-+.||..-+|+..+
T Consensus 131 ~~d~iwihDyhl~-llp~~lr~~~-------------~~~~i~~f~HipfP~~-------e~~~~lp~~~~ll~~~ 185 (460)
T cd03788 131 PGDLVWVHDYHLL-LLPQMLRERG-------------PDARIGFFLHIPFPSS-------EIFRCLPWREELLRGL 185 (460)
T ss_pred CCCEEEEeChhhh-HHHHHHHhhC-------------CCCeEEEEEeCCCCCh-------HHHhhCCChHHHHHHH
Confidence 4578999999964 4567777653 2678999999997653 3344567777777666
No 27
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=25.93 E-value=28 Score=34.97 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHcCCCHHHHHhhhc--ccCCCCCCcccchhhhHhhhh-ccCCCeEEEE
Q 012447 109 IQNAYADALNNLGHVLEEIAEQEK--DAALGNGGLGRLASCFLDSMA-TLNLPAWGYG 163 (463)
Q Consensus 109 l~~~~~e~l~~lg~~l~~i~~~E~--D~~LgnGGLGrLAacfldS~A-tLglP~~G~G 163 (463)
|...++++|++.|++++||-..=. =||++ +|| |.+..+.+.+| .+++|++|+.
T Consensus 33 L~~~i~~~l~~~~~~~~did~iavt~GPGsf-tgL-rvG~~~Ak~La~~~~~Pli~v~ 88 (268)
T PF00814_consen 33 LPPLIEELLKEAGISLSDIDAIAVTRGPGSF-TGL-RVGLSFAKGLALALNIPLIGVS 88 (268)
T ss_dssp HHHHHHHHHHHHTS-GGGESEEEEEEESS-H-HHH-HHHHHHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEecCCCcc-ccc-HHHHHHHHHHHHHhCCCeEeec
Confidence 567899999999999997755433 34555 477 88888999987 4999999985
No 28
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=23.39 E-value=42 Score=25.47 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCCHHHHHhhhcc
Q 012447 110 QNAYADALNNLGHVLEEIAEQEKD 133 (463)
Q Consensus 110 ~~~~~e~l~~lg~~l~~i~~~E~D 133 (463)
.+.+....+-||++++||.+.|+|
T Consensus 40 ~~~l~~ia~~l~~~~~el~~~~~d 63 (63)
T PF13443_consen 40 LDTLEKIAKALNCSPEELFEYEPD 63 (63)
T ss_dssp HHHHHHHHHHHT--HHHCTECCE-
T ss_pred HHHHHHHHHHcCCCHHHHhhcCCC
Confidence 356778889999999999999987
No 29
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=22.00 E-value=87 Score=29.35 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=39.1
Q ss_pred ccccCcchhhhhccccc----cCCCCCC---CHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 012447 4 AKANGKNEAAKLAKIPA----AANPLAN---EPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLI 69 (463)
Q Consensus 4 ~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~at~~~~y~Ala~~vrd~l~ 69 (463)
-|.||.+|+|.|.++-- +.--.+. ..+++...|.+.|.....+.+.. ..++..|++.|.
T Consensus 52 iKkdG~re~Fdr~Kl~~gl~~Ac~KRpVs~e~ie~~v~~Ie~~l~~~~~~EI~S-------~~IGe~Vm~~L~ 117 (147)
T TIGR00244 52 IKQDGVREPFNREKLLRGMVRACEKRPVSFDDLEHAINHIEAQLRAQGEREVPS-------ELIGQMVMQYLK 117 (147)
T ss_pred EcCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCcccH-------HHHHHHHHHHHh
Confidence 37899999999877632 1111122 34567888888888877766643 456777777773
No 30
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=21.69 E-value=78 Score=26.91 Aligned_cols=51 Identities=16% Similarity=0.327 Sum_probs=34.0
Q ss_pred CCCccccchhhhhhhhhhhhccHHHHHHHHHHhcCCCcccCCC-CceeEeecCCcccchH
Q 012447 289 GDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFP-SKVAVQLNDTHPTLAI 347 (463)
Q Consensus 289 ~Ds~~~Gk~lRLkQeyfl~sa~lqdiir~~~~~~~~~~l~~l~-~~~~ihlNDtHPalai 347 (463)
+.....++.+++ .|+|+|-++.+++-.-... +... .+.-|++||.+|+...
T Consensus 16 ~~~~~~~~~~~i---Ll~G~gD~Rhvl~Tl~~~~-----~~~~~~~l~~~l~D~~~~vlA 67 (100)
T PF14737_consen 16 NEGEPPDEDLNI---LLLGCGDLRHVLKTLASLP-----RSYDGRKLHFTLNDINPEVLA 67 (100)
T ss_pred hcCCCCCCCceE---EEecCccHHHHHHHHHhcc-----cCcccceeEEEEecCcHHHHH
Confidence 333344556776 7888888887777764433 1112 3788999999998764
No 31
>PF08466 IRK_N: Inward rectifier potassium channel N-terminal; InterPro: IPR013673 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric []. This metazoan domain is found to the N terminus of the IPR013521 from INTERPRO domain in Inward rectifier potassium channels (KIR2 or IRK2). ; PDB: 1U4F_A 2GIX_A.
Probab=21.65 E-value=31 Score=26.13 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhcccccccCCCCCCeeehhHHhHhhCCccceecccccC
Q 012447 425 KIPSMCILDNNPKKPVVRMANLCVVSAHTVRGLFLELLR 463 (463)
Q Consensus 425 ~~~~l~ii~~~~~~~~v~Ma~Lai~~S~~vNGVs~l~~~ 463 (463)
+..+.||+.- ..+..+++-|+.+.++. || ++|.|
T Consensus 5 R~~rYSiVS~--eEdglkl~tm~~~ng~g-ng--k~htr 38 (45)
T PF08466_consen 5 RAHRYSIVSS--EEDGLKLSTMPAVNGFG-NG--KVHTR 38 (45)
T ss_dssp ---------------------------------------
T ss_pred ccccceeEec--cccceeeecccccCCcc-CC--ceecc
Confidence 3445666643 12379999999998887 88 88865
No 32
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.50 E-value=95 Score=25.97 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCCHHHHHhhh
Q 012447 111 NAYADALNNLGHVLEEIAEQE 131 (463)
Q Consensus 111 ~~~~e~l~~lg~~l~~i~~~E 131 (463)
..+|||..|+|+|+..+++..
T Consensus 58 ~LikeAv~ELgLDFsKve~Ak 78 (82)
T PF11212_consen 58 ALIKEAVEELGLDFSKVEAAK 78 (82)
T ss_pred HHHHHHHHHhCCcHHHHHHHH
Confidence 457999999999999998754
Done!