RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012447
(463 letters)
>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 876
Score = 502 bits (1294), Expect = e-171
Identities = 212/467 (45%), Positives = 285/467 (61%), Gaps = 29/467 (6%)
Query: 16 AKIPAAANPL--------ANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDR 67
IP + L N+ HV+ + S + A+ A + S+RD
Sbjct: 17 TMIPLLSRALWNKHQVKKFNKAEDFQDRFIDHVETTLARSLYNCDDMVAYEAASMSIRDN 76
Query: 68 LIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNA-------------YA 114
L+ WN+T F DPK+ YYLS+EFL GR L NA+ ++ I++
Sbjct: 77 LVIDWNKTQQKFTTRDPKRVYYLSLEFLMGRALDNALINMKIEDPEDPAASKGKPREMIK 136
Query: 115 DALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQK 174
AL+ LG LE++ +QE DA LGNGGLGRLA+CF+DSMAT +PAWGYGLRY YG+F QK
Sbjct: 137 GALDELGFKLEDVLDQEPDAGLGNGGLGRLAACFVDSMATEGIPAWGYGLRYEYGIFAQK 196
Query: 175 ITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTR-----KWVGGEVVQA 229
I Q E + WL +PWE+ R++V PV F+G V G +W+GGE V A
Sbjct: 197 IIDGYQVETPDYWLNSGNPWEIERNEVQIPVTFYGYVDRPEGGKTTLSASQWIGGERVLA 256
Query: 230 VAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPG 289
VAYD P+PG+KT N +LRLW A+ + +F+L +FN+G Y+++ RA+ I AVLYP
Sbjct: 257 VAYDFPVPGFKTSNVNNLRLWQARPT-TEFDLNKFNNGDYKNSVAQQQRAESITAVLYPN 315
Query: 290 DSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPE 349
D+ +GK LRLKQQ+F C+ASL D++ RFK KS R W+EFP +VA+QLNDTHPTLAI E
Sbjct: 316 DNFAQGKELRLKQQYFWCAASLHDILRRFK--KSKRPWTEFPDQVAIQLNDTHPTLAIVE 373
Query: 350 LMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDK 409
L R+L+D E L W EAWDI T+T AYTNHTV+ EALEKW + + LLPRH+EII +I+
Sbjct: 374 LQRVLVDLEKLDWHEAWDIVTKTFAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINW 433
Query: 410 RFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVRG 456
F+ V + + I++ N + +RMA L +V +H V G
Sbjct: 434 FFLEDVAKKFPKDVDLLSRISIIEENSPERQIRMAFLAIVGSHKVNG 480
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 469 bits (1208), Expect = e-159
Identities = 204/446 (45%), Positives = 280/446 (62%), Gaps = 9/446 (2%)
Query: 17 KIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETY 76
+I + + N + H+ ++ P +FA A +VRD L+ +W T
Sbjct: 1 QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQ 60
Query: 77 HHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAAL 136
H+ + DPK+ YYLS+EF GRTL N + +L ++NA +A LG +EE+ E E+DA L
Sbjct: 61 QHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGL 120
Query: 137 GNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEV 196
GNGGLGRLA+CFLDSMATL L A+GYG+RY +G+F QKI Q E A+DWL +PWE
Sbjct: 121 GNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEK 180
Query: 197 VRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASA 256
R + PV F+G V + + KWV +VV A+ YD P+PGY+ ++RLW AKA
Sbjct: 181 ARPEFTLPVHFYGRV-EHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP- 238
Query: 257 EDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMIL 316
DFNL FN G Y A + A+ I VLYP D+ EGK LRLKQ++F+ +A+LQD+I
Sbjct: 239 NDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIR 298
Query: 317 RFKERKSG------RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITT 370
RFK K G + FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T
Sbjct: 299 RFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTV 358
Query: 371 RTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMC 430
+T AYTNHTVLPEALE+W ++ LLPRH++II EI++RF+ V + ++ M
Sbjct: 359 KTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMS 418
Query: 431 ILDNNPKKPVVRMANLCVVSAHTVRG 456
+++ K + MA+LC+ +H V G
Sbjct: 419 LVEEGAVKR-INMAHLCIAGSHAVNG 443
Score = 30.8 bits (69), Expect = 0.44
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 7/98 (7%)
Query: 326 QWSEFPSKVAVQLNDTHPT----LAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVL 381
+ P K + N P L P L ++ + G + D + ++Y +
Sbjct: 460 FYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSYVDDEAF 519
Query: 382 PEALEKWSQAVMWKL---LPRHMEIIEEIDKRFIAMVR 416
+ K Q K L R ++ + F V+
Sbjct: 520 IRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVK 557
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
{Escherichia coli [TaxId: 562]}
Length = 796
Score = 437 bits (1125), Expect = e-147
Identities = 169/436 (38%), Positives = 237/436 (54%), Gaps = 16/436 (3%)
Query: 22 ANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNK 81
+ P+ N+ +S Q S + P Q + A +E++ + L Q
Sbjct: 1 SQPIFND-KQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALAEMLRAQPFAKPVA--- 56
Query: 82 VDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGL 141
+ + Y+SMEFL GR N + +L D+L L ++ E+E D ALGNGGL
Sbjct: 57 -NQRHVNYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGL 115
Query: 142 GRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDV 201
GRLA+CFLDSMAT+ A GYGL Y+YGLF+Q Q E +DW PW +
Sbjct: 116 GRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEAL 175
Query: 202 VFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNL 261
V G V + +W + A+D+P+ GY+ LRLW A A F+L
Sbjct: 176 DVQVGIGGKVTKDG----RWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATH-AHPFDL 230
Query: 262 FQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKER 321
+FNDG + A Q A+++ VLYP D+ EGK LRL QQ+F C+ S+ D++ R
Sbjct: 231 TKFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHH-- 288
Query: 322 KSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVL 381
+GR+ E +QLNDTHPT+AIPEL+R+L+DE + WD+AW IT++T AYTNHT++
Sbjct: 289 LAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLM 348
Query: 382 PEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVV 441
PEALE+W ++ LLPRHM+II EI+ RF +V T E + ++ + V
Sbjct: 349 PEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEKVWAKLAVVHDKQ----V 404
Query: 442 RMANLCVVSAHTVRGL 457
MANLCVV V G+
Sbjct: 405 HMANLCVVGGFAVNGV 420
>d1oy2a_ b.55.1.2 (A:) Shc adaptor protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 191
Score = 27.3 bits (60), Expect = 3.3
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 184 AEDWLEKFSPWEVVRHDVVFPVRFFGSVMVN--PNGTRKWVGGEVVQ 228
WL +V+ V + VR+ G V V +V +
Sbjct: 19 TRGWLH--PNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTR 63
>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic
enzyme {Human (Homo sapiens) [TaxId: 9606]}
Length = 259
Score = 27.4 bits (61), Expect = 3.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 396 LLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPK 437
LLP +E + RF ++ S LE I M I + N K
Sbjct: 33 LLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGIQERNEK 74
>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic
enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Length = 294
Score = 27.5 bits (61), Expect = 3.8
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 396 LLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPK 437
LLP E+ R I +R +DL I + D N K
Sbjct: 66 LLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEK 107
>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast
(Saccharomyces cerevisiae), pII [TaxId: 4932]}
Length = 207
Score = 26.4 bits (58), Expect = 6.2
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 290 DSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLA 346
+ EG L R + F + + D++ +++ + R P +V +NDT TL
Sbjct: 147 NKINEGILQRWTKGFDIPNIENHDVVPMLQKQITKR---NIPIEVVALINDTTGTLV 200
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Length = 257
Score = 26.2 bits (58), Expect = 8.7
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 396 LLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPK 437
LLP + + SDL+ I M + D N K
Sbjct: 31 LLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSLQDRNEK 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.402
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,759,272
Number of extensions: 82419
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 14
Length of query: 463
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 375
Effective length of database: 1,199,356
Effective search space: 449758500
Effective search space used: 449758500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)