BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012448
(463 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKB|A Chain A, Crystal Structure Determination Of Shortfin Mako (Isurus
Oxyrinchus) Hemoglobin At 1.9 Angstrom Resolution
pdb|3MKB|C Chain C, Crystal Structure Determination Of Shortfin Mako (Isurus
Oxyrinchus) Hemoglobin At 1.9 Angstrom Resolution
Length = 140
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 36 LDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHS 95
++R + I L + P+ G E L R+F T GA Y + G H
Sbjct: 5 VERSTIGAIAKILASTPEAYGAE-----ALARLFATHPGAKSYFDYADYSAAGAKVQLHG 59
Query: 96 VKRLACKTVTCLLEDSDLEASCAL-------QLLIDYEIYPLLLDCLI 136
K + V+ D DL A + +LL+D +P+L +C++
Sbjct: 60 GKVIRA-VVSAAEHDDDLHAHLMVLAVTHGKKLLVDPSNFPMLSECIL 106
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 356 DRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIY 398
+ Q QL A L NIA T ++ K++++ADA L+Y
Sbjct: 53 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 95
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 356 DRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIY 398
+ Q QL A L NIA T ++ K++++ADA L+Y
Sbjct: 55 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 97
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 356 DRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIY 398
+ Q QL A L NIA T ++ K++++ADA L+Y
Sbjct: 53 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 95
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 356 DRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIY 398
+ Q QL A L NIA T ++ K++++ADA L+Y
Sbjct: 55 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 97
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 363 QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIY 398
QL A L NIA T ++ K++++ADA L+Y
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 96
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 363 QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIY 398
QL A L NIA T ++ K++++ADA L+Y
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 96
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 363 QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIY 398
QL A L NIA T ++ K++++ADA L+Y
Sbjct: 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,269,212
Number of Sequences: 62578
Number of extensions: 399901
Number of successful extensions: 975
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 960
Number of HSP's gapped (non-prelim): 19
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)