BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012448
(463 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5IFJ8|PSMD5_MACFA 26S proteasome non-ATPase regulatory subunit 5 OS=Macaca
fascicularis GN=PSMD5 PE=2 SV=3
Length = 504
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/387 (21%), Positives = 167/387 (43%), Gaps = 32/387 (8%)
Query: 85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVAT 144
+Q GL SVK L + ++E+SD ++L + E+ ++ C+ N VA
Sbjct: 88 LQRGLIHPDDSVKILTLSQIGRIVENSD----AVTEILNNAELLKQIVYCIGGENLSVAK 143
Query: 145 ASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVA 204
A++ ++ +++ G++ +F ++ DL + V + + + R RV LIV++ SVS
Sbjct: 144 AAIKSLSRISLTQAGLEALF--ESNLLDDLKS-VMKTNDIVRYRVYELIVEISSVSPESL 200
Query: 205 SVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGN 264
+ + L+T L ++ + D L + +E++ LA H ++L++ ++ + ++I
Sbjct: 201 NYCTTSGLVTQLLRELTGE-DVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVG 259
Query: 265 SATE---TILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECES 321
+ ++ + + G L D + ++ +SQD
Sbjct: 260 ADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPI-----FVEKVFEMTESQDPTMTGV 314
Query: 322 ALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSED 381
A++ +G +GS+++G +L R ++ R GH + A + K R D
Sbjct: 315 AVDTVGILGSNVEGKQVLQKTGTRFERLLM-----RIGHQSKNAP------VELKIRCLD 363
Query: 382 KI--ILNADAEESLRHLIYEVASRSSKLT--PSGLFLSVLQQA-AEIRLAGYRMITGLVA 436
I +L E+ L+ S S L+ P LF + Q E+ A ++ T +
Sbjct: 364 AISSLLYLPPEQQTDDLLRMTESWFSALSRDPLELFRGISSQPFPELHCAALKVFTAIAN 423
Query: 437 RPWCLMELCSKQEIINTVTDASTEQQK 463
+PW + + + V D S EQ K
Sbjct: 424 QPWAQKLMFNIPGFVEYVVDRSVEQDK 450
>sp|Q16401|PSMD5_HUMAN 26S proteasome non-ATPase regulatory subunit 5 OS=Homo sapiens
GN=PSMD5 PE=1 SV=3
Length = 504
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/387 (21%), Positives = 167/387 (43%), Gaps = 32/387 (8%)
Query: 85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVAT 144
+Q GL SVK L + ++E+SD ++L + E+ ++ C+ N VA
Sbjct: 88 LQRGLIHPDDSVKILTLSQIGRIVENSD----AVTEILNNAELLKQIVYCIGGENLSVAK 143
Query: 145 ASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVA 204
A++ ++ +++ G++ +F ++ DL + V + + + R RV LI+++ SVS
Sbjct: 144 AAIKSLSRISLTQAGLEALF--ESNLLDDLKS-VMKTNDIVRYRVYELIIEISSVSPESL 200
Query: 205 SVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGN 264
+ + L+T L ++ + D L + +E++ LA H ++L++ ++ + ++I
Sbjct: 201 NYCTTSGLVTQLLRELTGE-DVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNIIVG 259
Query: 265 SATE---TILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECES 321
+ ++ + + G L D + ++ ++SQD
Sbjct: 260 ADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPI-----FVEKVFEMIESQDPTMIGV 314
Query: 322 ALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSED 381
A++ +G +GS+++G +L R ++ R GH + A + K R D
Sbjct: 315 AVDTVGILGSNVEGKQVLQKTGTRFERLLM-----RIGHQSKNAP------VELKIRCLD 363
Query: 382 KI--ILNADAEESLRHLIYEVASRSSKLT--PSGLFLSVLQQA-AEIRLAGYRMITGLVA 436
I +L E+ L+ S S L+ P LF + Q E+ A ++ T +
Sbjct: 364 AISSLLYLPPEQQTDDLLRMTESWFSSLSRDPLELFRGISSQPFPELHCAALKVFTAIAN 423
Query: 437 RPWCLMELCSKQEIINTVTDASTEQQK 463
+PW + + + V D S E K
Sbjct: 424 QPWAQKLMFNSPGFVEYVVDRSVEHDK 450
>sp|Q0P5A6|PSMD5_BOVIN 26S proteasome non-ATPase regulatory subunit 5 OS=Bos taurus
GN=PSMD5 PE=2 SV=1
Length = 503
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 82/393 (20%), Positives = 161/393 (40%), Gaps = 45/393 (11%)
Query: 85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVAT 144
+Q GLT + SVK L V ++E+SD ++L + E+ ++ C+ N VA
Sbjct: 88 LQRGLTHPNDSVKILTLSQVGRIVENSD----AVTEILNNAELLKQIVYCIGGENLSVAK 143
Query: 145 ASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVA 204
++ ++ +++ G++ +F ++ DL + V + + + R RV LIV++ SVS
Sbjct: 144 TAIKSLSRISLTQAGLEALF--ESNLLDDLKS-VMKTNDIVRYRVYELIVEISSVSPESL 200
Query: 205 SVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGN 264
+ + L+T L ++ + D L + +E++ LA H ++L++ ++ + ++I
Sbjct: 201 NCCTTSGLVTQLLRELTGE-DVLVRATCIEMVTSLACTHHGRQYLAQEGVIDQISNIIVG 259
Query: 265 SATE---TILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECES 321
+ + + + G L D + ++ +SQD
Sbjct: 260 ADADPFSSFYLPGFVKFFGNLAIMDSPQQICERYPI-----FMEKVFEMTESQDPTMIGV 314
Query: 322 ALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSED 381
A++ +G +GS+++G +L Q G + L K S +
Sbjct: 315 AVDTIGILGSNVEGKQVL------------------QKTGTRFERLLMKIGYQAKNASTE 356
Query: 382 KIILNADAEESLRHLIYEVASRSSKLT----------PSGLFLSVLQQA-AEIRLAGYRM 430
I DA SL +L E ++T P LF + Q E+ A ++
Sbjct: 357 LKIRCLDALSSLFYLPPEQTDDLLRMTESWFSSLSRDPLELFRGISNQPFPELHCAALKV 416
Query: 431 ITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
T + +PW + + + V D S E K
Sbjct: 417 FTAIANQPWAQKLMFNSPGFVEYVMDRSVEHDK 449
>sp|Q8BJY1|PSMD5_MOUSE 26S proteasome non-ATPase regulatory subunit 5 OS=Mus musculus
GN=Psmd5 PE=1 SV=4
Length = 504
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 84/413 (20%), Positives = 174/413 (42%), Gaps = 38/413 (9%)
Query: 62 VVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQL 121
V LER+ + L + +Q GLT SVK L + ++E+S+ ++
Sbjct: 65 VSILERLLQAVEPIHLARNLRLDLQRGLTHPDDSVKTLTLSQIGRIVENSE----AVTEI 120
Query: 122 LIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQC 181
L + E+ ++ C+ N VA A++ ++ +++ G++ +F ++ DL N V +
Sbjct: 121 LNNAELLKQIVYCIGGENLSVAKAAIKSLSRISLTQAGLEALF--ESNLLDDLKN-VMKT 177
Query: 182 SSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241
+ + R RV LI+ + SVS + + L+T L + ++ + D L + +E++ LA
Sbjct: 178 NDVVRYRVYELIIDISSVSSESLNYCTTSGLVTQLLKELTGE-DVLVRATCIEMVTSLAY 236
Query: 242 IQHSAEFLSRTTLLQLLCSLIGNSATETI---LRSRAIMISGRLLSKDDSHMFIDESSA- 297
H ++L++ ++ + ++I + ++ + G L D +
Sbjct: 237 THHGRQYLAQEGVIDQISNIIVGADSDPFSGFYLPGFVKFFGNLAVMDSPQQICERYPVF 296
Query: 298 -KTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFD 356
+ V D SQD A++ +G +GSS++G +L R ++ +
Sbjct: 297 LEKVFEMAD-------SQDPTMIGVAVDTVGILGSSVEGKQVLQKTGTRFERVLMRVGYQ 349
Query: 357 RQGHGKQLA-----ALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSG 411
+ +L A+ L ++ + +++D + + S+ SR S
Sbjct: 350 AKNASTELKIRCLDAVSSLLYLSPEQQTDDFLGMTESWFSSM--------SRDSL----E 397
Query: 412 LFLSVLQQA-AEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463
LF + Q E+ A ++ T + +PW + + + V D S E K
Sbjct: 398 LFRGISNQPFPELHCAALKVFTAIADQPWAQRLMFNSPGFVEFVMDRSVEHDK 450
>sp|Q056G0|SYFA_LEPBL Phenylalanine--tRNA ligase alpha subunit OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550)
GN=pheS PE=3 SV=1
Length = 341
Score = 35.8 bits (81), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 59 DTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTC 106
DT+ V L RIF+ + L P Y PFV+ G D + L C+ C
Sbjct: 229 DTMQVLLSRIFEKEIKTRLRPGYFPFVEPGFELD---INCLVCEGKGC 273
>sp|Q04P74|SYFA_LEPBJ Phenylalanine--tRNA ligase alpha subunit OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain JB197)
GN=pheS PE=3 SV=1
Length = 341
Score = 35.8 bits (81), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 59 DTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTC 106
DT+ V L RIF+ + L P Y PFV+ G D + L C+ C
Sbjct: 229 DTMQVLLSRIFEKEIKTRLRPGYFPFVEPGFELD---INCLVCEGKGC 273
>sp|Q8EYR3|SYFA_LEPIN Phenylalanine--tRNA ligase alpha subunit OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
GN=pheS PE=3 SV=1
Length = 341
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 59 DTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTC 106
DT+ V L RIF+ + L P Y PFV+ G D + L C C
Sbjct: 229 DTMQVLLSRIFEKEIKTRLRPGYFPFVEPGFELD---ISCLVCDGKGC 273
>sp|Q72M80|SYFA_LEPIC Phenylalanine--tRNA ligase alpha subunit OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar copenhageni
(strain Fiocruz L1-130) GN=pheS PE=3 SV=1
Length = 341
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 59 DTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTC 106
DT+ V L RIF+ + L P Y PFV+ G D + L C C
Sbjct: 229 DTMQVLLSRIFEKEIKTRLRPGYFPFVEPGFELD---ISCLVCDGKGC 273
>sp|P40468|TAO3_YEAST Cell morphogenesis protein PAG1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=TAO3 PE=1 SV=1
Length = 2376
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 165 PADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKN 224
P +N + LGN+ + + G+ R++ S++ S+IF NLLT L E V K
Sbjct: 1681 PMNNNKYSFLGNIWERLNYNGK-RII--------FSKAQLSIIFLVNLLTNLSESVKAKI 1731
Query: 225 DTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMIS 279
L +SI L + + I SA ++ T + L S + T +LR++ + S
Sbjct: 1732 PLLLHMSICLLDHYVPLIHESACKIASTLIFGLAPSHEKSEETVKLLRNKHALWS 1786
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,613,494
Number of Sequences: 539616
Number of extensions: 5513124
Number of successful extensions: 15082
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 15070
Number of HSP's gapped (non-prelim): 17
length of query: 463
length of database: 191,569,459
effective HSP length: 121
effective length of query: 342
effective length of database: 126,275,923
effective search space: 43186365666
effective search space used: 43186365666
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)