Query 012448
Match_columns 463
No_of_seqs 132 out of 145
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 02:45:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4413 26S proteasome regulat 100.0 6.3E-92 1.4E-96 686.0 34.0 456 7-463 1-466 (524)
2 PF10508 Proteasom_PSMB: Prote 100.0 1.1E-84 2.5E-89 695.5 36.2 433 10-463 9-447 (503)
3 KOG0166 Karyopherin (importin) 99.7 4.5E-15 9.7E-20 156.3 27.9 284 41-341 68-362 (514)
4 PLN03200 cellulose synthase-in 99.6 2.4E-12 5.1E-17 153.2 35.2 392 14-454 36-451 (2102)
5 PLN03200 cellulose synthase-in 99.5 1.2E-10 2.6E-15 139.0 35.9 419 7-461 415-887 (2102)
6 KOG0166 Karyopherin (importin) 99.4 3.4E-11 7.3E-16 127.3 21.1 369 32-434 102-484 (514)
7 PF10508 Proteasom_PSMB: Prote 99.4 4.8E-10 1E-14 120.8 30.2 315 85-434 43-364 (503)
8 KOG4224 Armadillo repeat prote 99.1 6.7E-09 1.5E-13 104.6 19.3 313 26-357 195-519 (550)
9 PRK09687 putative lyase; Provi 98.9 1.7E-07 3.6E-12 93.9 21.0 235 30-331 14-250 (280)
10 PF05804 KAP: Kinesin-associat 98.9 5.5E-06 1.2E-10 92.1 33.7 396 10-455 262-675 (708)
11 PF01602 Adaptin_N: Adaptin N 98.8 1.2E-06 2.6E-11 94.0 22.6 290 39-375 42-333 (526)
12 PF01602 Adaptin_N: Adaptin N 98.7 4.1E-07 9E-12 97.6 17.7 262 40-339 80-341 (526)
13 PRK09687 putative lyase; Provi 98.7 5.8E-07 1.3E-11 90.0 17.4 196 82-331 25-221 (280)
14 COG5064 SRP1 Karyopherin (impo 98.7 1.7E-06 3.7E-11 87.0 20.1 406 6-445 81-505 (526)
15 KOG4224 Armadillo repeat prote 98.7 2.3E-06 4.9E-11 86.7 19.4 286 31-340 159-455 (550)
16 PRK13800 putative oxidoreducta 98.6 3.2E-06 6.9E-11 97.4 22.8 184 37-282 619-802 (897)
17 PF05804 KAP: Kinesin-associat 98.6 2.3E-05 5E-10 87.2 27.9 336 78-462 288-633 (708)
18 PRK13800 putative oxidoreducta 98.6 1E-05 2.2E-10 93.2 24.9 267 82-433 623-896 (897)
19 COG5064 SRP1 Karyopherin (impo 98.6 9.4E-07 2E-11 88.8 14.0 242 15-267 176-428 (526)
20 KOG2171 Karyopherin (importin) 98.5 1.6E-05 3.5E-10 90.2 22.4 358 41-436 120-504 (1075)
21 PTZ00429 beta-adaptin; Provisi 98.5 0.00013 2.9E-09 82.0 28.9 291 42-376 71-363 (746)
22 KOG2171 Karyopherin (importin) 98.4 7.8E-05 1.7E-09 84.8 25.8 359 29-437 21-419 (1075)
23 cd00020 ARM Armadillo/beta-cat 98.4 1.5E-06 3.2E-11 73.7 9.5 117 122-241 3-120 (120)
24 PTZ00429 beta-adaptin; Provisi 98.3 0.00056 1.2E-08 77.0 29.0 254 38-331 31-285 (746)
25 cd00020 ARM Armadillo/beta-cat 98.3 5.6E-06 1.2E-10 70.1 10.3 112 80-197 7-119 (120)
26 KOG1241 Karyopherin (importin) 98.0 0.0032 6.9E-08 69.4 25.8 331 74-437 123-531 (859)
27 KOG4413 26S proteasome regulat 97.9 0.0014 3.1E-08 66.1 18.5 289 144-460 61-358 (524)
28 PF04826 Arm_2: Armadillo-like 97.8 0.00047 1E-08 68.2 14.8 194 76-282 8-203 (254)
29 PF04826 Arm_2: Armadillo-like 97.6 0.00069 1.5E-08 67.0 12.6 193 34-241 7-205 (254)
30 PF12348 CLASP_N: CLASP N term 97.6 0.00038 8.2E-09 66.9 10.3 153 82-247 55-213 (228)
31 KOG4199 Uncharacterized conser 97.5 0.0051 1.1E-07 62.4 16.8 220 28-259 178-422 (461)
32 PF14664 RICTOR_N: Rapamycin-i 97.5 0.0089 1.9E-07 62.4 18.8 237 76-329 21-267 (371)
33 KOG1062 Vesicle coat complex A 97.3 0.014 3E-07 64.8 18.7 179 70-265 132-397 (866)
34 KOG2160 Armadillo/beta-catenin 97.3 0.0098 2.1E-07 60.7 16.5 171 58-235 100-276 (342)
35 KOG4500 Rho/Rac GTPase guanine 97.3 0.14 3E-06 53.8 24.3 383 42-458 6-454 (604)
36 KOG0168 Putative ubiquitin fus 97.2 0.015 3.2E-07 65.0 17.1 256 9-276 181-456 (1051)
37 KOG0168 Putative ubiquitin fus 97.1 0.011 2.5E-07 65.9 15.4 214 40-264 168-391 (1051)
38 PF12717 Cnd1: non-SMC mitotic 97.0 0.0067 1.5E-07 56.6 11.2 132 55-199 2-140 (178)
39 cd00256 VATPase_H VATPase_H, r 97.0 0.33 7.2E-06 51.6 24.8 326 13-375 74-425 (429)
40 KOG1242 Protein containing ada 96.8 0.28 6E-06 53.4 22.2 272 43-340 100-410 (569)
41 PF12348 CLASP_N: CLASP N term 96.8 0.0046 1E-07 59.3 8.0 131 18-158 78-209 (228)
42 PF13646 HEAT_2: HEAT repeats; 96.7 0.0059 1.3E-07 49.2 7.1 86 41-151 1-88 (88)
43 KOG1059 Vesicle coat complex A 96.7 0.02 4.4E-07 62.9 12.9 199 30-244 140-368 (877)
44 KOG1062 Vesicle coat complex A 96.7 0.055 1.2E-06 60.3 16.1 270 124-440 101-383 (866)
45 KOG0212 Uncharacterized conser 96.6 0.29 6.3E-06 52.9 20.3 280 69-377 74-367 (675)
46 KOG1241 Karyopherin (importin) 96.6 0.49 1.1E-05 52.8 22.2 196 38-241 318-530 (859)
47 KOG0212 Uncharacterized conser 96.5 0.04 8.7E-07 59.3 13.5 225 40-281 209-441 (675)
48 PF13513 HEAT_EZ: HEAT-like re 96.4 0.0045 9.7E-08 46.0 4.3 55 94-153 1-55 (55)
49 KOG2023 Nuclear transport rece 96.3 0.19 4.2E-06 55.2 17.3 308 40-374 129-504 (885)
50 TIGR02270 conserved hypothetic 96.3 0.26 5.7E-06 52.1 18.2 205 79-338 53-274 (410)
51 KOG0946 ER-Golgi vesicle-tethe 96.2 1.9 4E-05 48.6 24.1 139 123-263 119-264 (970)
52 KOG4199 Uncharacterized conser 96.0 1.1 2.3E-05 46.1 19.5 205 73-283 138-358 (461)
53 KOG1824 TATA-binding protein-i 96.0 0.49 1.1E-05 53.9 18.6 226 79-331 650-886 (1233)
54 PF13646 HEAT_2: HEAT repeats; 96.0 0.023 5E-07 45.7 6.4 80 83-189 2-83 (88)
55 KOG0213 Splicing factor 3b, su 95.9 0.26 5.5E-06 54.9 15.8 265 43-331 553-828 (1172)
56 PF12755 Vac14_Fab1_bd: Vacuol 95.7 0.034 7.3E-07 47.0 6.4 75 75-155 22-96 (97)
57 KOG1020 Sister chromatid cohes 95.6 1.3 2.8E-05 52.9 20.9 119 33-162 808-928 (1692)
58 COG5096 Vesicle coat complex, 95.6 0.18 3.9E-06 56.8 13.8 119 55-190 69-187 (757)
59 TIGR02270 conserved hypothetic 95.6 0.64 1.4E-05 49.3 17.1 199 82-339 88-305 (410)
60 PF02985 HEAT: HEAT repeat; I 95.5 0.025 5.4E-07 37.3 4.0 29 82-110 2-30 (31)
61 KOG1048 Neural adherens juncti 95.5 1.2 2.5E-05 50.0 19.1 305 36-359 230-620 (717)
62 KOG4500 Rho/Rac GTPase guanine 95.3 2.5 5.4E-05 44.8 19.8 78 187-266 291-369 (604)
63 PF05536 Neurochondrin: Neuroc 95.3 0.8 1.7E-05 50.3 17.4 65 200-264 87-151 (543)
64 KOG1824 TATA-binding protein-i 95.2 1.3 2.8E-05 50.7 18.5 268 43-330 9-285 (1233)
65 KOG1293 Proteins containing ar 95.2 5.8 0.00013 43.9 23.0 166 28-200 84-263 (678)
66 KOG1943 Beta-tubulin folding c 95.2 1.2 2.6E-05 51.5 18.4 220 9-247 354-617 (1133)
67 COG5215 KAP95 Karyopherin (imp 95.2 3.9 8.4E-05 44.8 21.2 115 39-158 321-440 (858)
68 COG1413 FOG: HEAT repeat [Ener 95.1 0.41 8.8E-06 48.6 13.5 171 37-242 72-243 (335)
69 PF12719 Cnd3: Nuclear condens 95.0 1.2 2.6E-05 44.9 16.5 193 64-270 10-216 (298)
70 KOG1242 Protein containing ada 95.0 0.48 1E-05 51.6 14.0 111 40-158 217-327 (569)
71 KOG2023 Nuclear transport rece 94.8 1.4 3E-05 48.8 16.9 265 38-329 173-503 (885)
72 PF03224 V-ATPase_H_N: V-ATPas 94.8 0.12 2.6E-06 52.5 8.7 182 81-270 107-300 (312)
73 KOG2973 Uncharacterized conser 94.8 2 4.4E-05 43.6 16.9 276 83-375 6-315 (353)
74 PF12460 MMS19_C: RNAPII trans 94.8 6.5 0.00014 41.6 22.4 353 41-438 1-396 (415)
75 PF03224 V-ATPase_H_N: V-ATPas 94.7 0.2 4.4E-06 50.8 9.9 181 91-272 68-258 (312)
76 KOG0211 Protein phosphatase 2A 94.7 2.1 4.5E-05 48.8 18.5 230 16-264 257-490 (759)
77 KOG1248 Uncharacterized conser 94.5 2.4 5.3E-05 49.6 18.7 253 63-331 73-341 (1176)
78 KOG0213 Splicing factor 3b, su 94.5 5.5 0.00012 44.9 20.5 281 41-353 761-1082(1172)
79 KOG2160 Armadillo/beta-catenin 94.5 1.7 3.7E-05 44.7 15.8 184 136-326 93-277 (342)
80 COG5096 Vesicle coat complex, 94.4 0.7 1.5E-05 52.2 13.9 74 73-153 120-193 (757)
81 PF14664 RICTOR_N: Rapamycin-i 94.4 1.7 3.8E-05 45.4 16.1 224 7-241 35-269 (371)
82 PF13513 HEAT_EZ: HEAT-like re 94.3 0.045 9.7E-07 40.6 3.1 52 56-107 2-55 (55)
83 KOG1059 Vesicle coat complex A 94.3 1 2.3E-05 50.1 14.4 100 139-244 103-214 (877)
84 PF14668 RICTOR_V: Rapamycin-i 94.1 0.19 4E-06 40.3 6.4 57 319-377 4-60 (73)
85 PF12717 Cnd1: non-SMC mitotic 93.6 0.64 1.4E-05 43.3 10.2 111 93-222 1-112 (178)
86 KOG1991 Nuclear transport rece 93.5 8.4 0.00018 44.5 20.2 72 82-160 464-537 (1010)
87 PF08569 Mo25: Mo25-like; Int 93.4 9 0.0002 39.6 19.1 234 118-397 68-306 (335)
88 PF14726 RTTN_N: Rotatin, an a 93.4 0.35 7.5E-06 41.0 7.2 79 183-262 1-80 (98)
89 KOG1061 Vesicle coat complex A 93.3 0.71 1.5E-05 51.6 11.2 155 29-202 31-193 (734)
90 PF00514 Arm: Armadillo/beta-c 93.1 0.22 4.8E-06 34.6 4.7 38 118-155 4-41 (41)
91 KOG1058 Vesicle coat complex C 92.8 4.2 9E-05 45.8 16.1 198 33-265 46-255 (948)
92 KOG1248 Uncharacterized conser 92.6 27 0.00058 41.4 23.1 348 57-442 490-880 (1176)
93 KOG1293 Proteins containing ar 92.6 3 6.5E-05 46.1 14.6 183 81-269 378-564 (678)
94 PF12460 MMS19_C: RNAPII trans 92.4 13 0.00027 39.4 19.0 177 55-243 204-396 (415)
95 COG5215 KAP95 Karyopherin (imp 92.3 2.4 5.1E-05 46.3 13.1 275 38-332 128-438 (858)
96 PF02985 HEAT: HEAT repeat; I 92.3 0.17 3.6E-06 33.3 3.0 30 127-156 1-30 (31)
97 PF05918 API5: Apoptosis inhib 92.0 19 0.00042 39.6 20.0 132 85-239 28-160 (556)
98 PF11707 Npa1: Ribosome 60S bi 92.0 4.7 0.0001 41.4 14.7 163 28-199 46-238 (330)
99 PF00514 Arm: Armadillo/beta-c 91.9 0.55 1.2E-05 32.6 5.5 40 200-240 1-40 (41)
100 KOG1020 Sister chromatid cohes 91.7 3 6.5E-05 50.0 14.0 164 58-239 794-958 (1692)
101 KOG1240 Protein kinase contain 91.4 9.4 0.0002 45.2 17.4 225 82-331 424-685 (1431)
102 PF12830 Nipped-B_C: Sister ch 91.3 0.46 1E-05 44.7 6.0 73 76-157 4-76 (187)
103 PF12719 Cnd3: Nuclear condens 91.2 5.4 0.00012 40.2 14.0 194 31-241 23-230 (298)
104 KOG4646 Uncharacterized conser 90.9 0.73 1.6E-05 41.5 6.5 106 41-154 18-127 (173)
105 KOG0946 ER-Golgi vesicle-tethe 90.5 37 0.0008 38.8 21.8 402 33-456 55-531 (970)
106 PF13001 Ecm29: Proteasome sta 90.3 2 4.3E-05 46.8 10.6 186 39-241 237-443 (501)
107 PF05536 Neurochondrin: Neuroc 90.3 4.7 0.0001 44.4 13.5 189 40-241 6-213 (543)
108 KOG0211 Protein phosphatase 2A 90.2 14 0.0003 42.3 17.3 152 76-241 233-384 (759)
109 KOG1060 Vesicle coat complex A 90.0 5.3 0.00011 45.2 13.4 137 82-242 110-247 (968)
110 PF12755 Vac14_Fab1_bd: Vacuol 89.9 3.1 6.8E-05 35.0 9.3 54 211-265 27-80 (97)
111 KOG1077 Vesicle coat complex A 89.9 27 0.00057 39.4 18.4 226 179-440 158-402 (938)
112 KOG0414 Chromosome condensatio 89.3 2.9 6.2E-05 49.0 11.1 166 58-248 269-436 (1251)
113 PF04078 Rcd1: Cell differenti 89.3 3.5 7.7E-05 40.9 10.4 153 93-252 8-179 (262)
114 PF14668 RICTOR_V: Rapamycin-i 89.1 0.89 1.9E-05 36.4 5.0 63 275-342 7-69 (73)
115 KOG1820 Microtubule-associated 88.9 1.2 2.6E-05 50.9 7.8 110 38-156 335-444 (815)
116 COG1413 FOG: HEAT repeat [Ener 88.8 28 0.00062 35.1 24.0 190 80-334 43-245 (335)
117 PF11701 UNC45-central: Myosin 88.7 1.3 2.9E-05 40.5 6.7 149 40-195 4-156 (157)
118 PF14666 RICTOR_M: Rapamycin-i 88.6 9.4 0.0002 37.2 12.8 143 226-435 78-224 (226)
119 KOG1061 Vesicle coat complex A 88.6 2.6 5.7E-05 47.2 9.9 157 65-243 34-191 (734)
120 PF14500 MMS19_N: Dos2-interac 88.1 30 0.00064 34.5 17.8 222 84-331 3-237 (262)
121 PF10274 ParcG: Parkin co-regu 88.0 3.8 8.3E-05 38.6 9.3 90 39-136 38-130 (183)
122 COG5218 YCG1 Chromosome conden 87.9 7.9 0.00017 42.6 12.6 195 10-237 64-262 (885)
123 PF11894 DUF3414: Protein of u 87.6 27 0.00059 43.7 19.0 90 179-270 1462-1572(1691)
124 PF11841 DUF3361: Domain of un 87.6 9.4 0.0002 35.3 11.4 117 32-154 4-130 (160)
125 KOG1078 Vesicle coat complex C 87.3 19 0.00041 40.9 15.4 361 6-440 16-405 (865)
126 KOG4653 Uncharacterized conser 87.1 9.3 0.0002 43.7 13.0 184 82-283 729-917 (982)
127 smart00185 ARM Armadillo/beta- 87.1 1.4 3E-05 29.8 4.5 38 118-155 4-41 (41)
128 PF08569 Mo25: Mo25-like; Int 86.7 15 0.00032 38.0 13.6 202 30-241 67-283 (335)
129 KOG2025 Chromosome condensatio 86.7 11 0.00024 42.3 13.1 76 76-157 81-157 (892)
130 KOG2734 Uncharacterized conser 86.6 6.7 0.00014 41.7 10.9 164 118-284 117-308 (536)
131 KOG2259 Uncharacterized conser 86.5 3.6 7.8E-05 45.6 9.3 150 83-256 376-525 (823)
132 KOG1058 Vesicle coat complex C 86.4 11 0.00023 42.7 12.8 73 70-151 124-197 (948)
133 KOG3678 SARM protein (with ste 85.4 11 0.00023 40.6 11.7 158 118-282 172-334 (832)
134 KOG2038 CAATT-binding transcri 85.4 1.3 2.8E-05 49.6 5.3 80 77-165 301-380 (988)
135 PF13001 Ecm29: Proteasome sta 84.7 4.2 9.2E-05 44.2 9.0 186 123-331 234-443 (501)
136 PF11698 V-ATPase_H_C: V-ATPas 84.6 1.9 4.2E-05 37.8 5.1 69 82-154 45-114 (119)
137 cd00256 VATPase_H VATPase_H, r 84.2 64 0.0014 34.6 25.7 187 79-272 52-247 (429)
138 KOG4653 Uncharacterized conser 83.9 12 0.00027 42.7 12.1 176 181-377 737-920 (982)
139 KOG3678 SARM protein (with ste 83.5 18 0.00039 39.0 12.4 167 40-213 181-350 (832)
140 smart00185 ARM Armadillo/beta- 83.4 2.7 5.9E-05 28.3 4.5 39 201-240 2-40 (41)
141 PF05004 IFRD: Interferon-rela 83.1 57 0.0012 33.2 16.9 99 82-188 45-148 (309)
142 PF05918 API5: Apoptosis inhib 82.7 5 0.00011 44.1 8.4 129 55-203 36-168 (556)
143 COG5181 HSH155 U2 snRNP splice 82.2 92 0.002 34.9 19.2 168 41-227 606-780 (975)
144 COG5656 SXM1 Importin, protein 82.1 29 0.00064 39.3 13.9 179 72-270 367-559 (970)
145 PF04118 Dopey_N: Dopey, N-ter 82.0 25 0.00054 35.9 12.7 179 43-238 58-251 (307)
146 KOG1060 Vesicle coat complex A 81.1 3.5 7.7E-05 46.5 6.5 36 173-208 508-543 (968)
147 KOG2137 Protein kinase [Signal 80.4 19 0.00041 40.5 11.8 125 35-170 385-511 (700)
148 PF11698 V-ATPase_H_C: V-ATPas 79.6 4.4 9.6E-05 35.6 5.4 70 212-283 44-114 (119)
149 PF12830 Nipped-B_C: Sister ch 78.6 20 0.00043 33.6 10.1 109 127-241 9-122 (187)
150 KOG2973 Uncharacterized conser 78.5 84 0.0018 32.3 15.3 221 38-272 43-303 (353)
151 KOG2956 CLIP-associating prote 78.3 1.1E+02 0.0023 33.2 16.9 153 82-251 331-490 (516)
152 PF04388 Hamartin: Hamartin pr 78.1 15 0.00032 41.6 10.4 72 81-158 71-143 (668)
153 COG5218 YCG1 Chromosome conden 77.8 31 0.00067 38.2 12.1 123 58-191 64-192 (885)
154 PF11701 UNC45-central: Myosin 77.6 3.2 7E-05 37.9 4.3 133 139-277 18-152 (157)
155 PF12726 SEN1_N: SEN1 N termin 77.1 8.1 0.00017 44.0 8.2 119 86-209 484-608 (727)
156 PF10165 Ric8: Guanine nucleot 77.1 6.5 0.00014 42.1 7.0 74 147-222 2-85 (446)
157 KOG1820 Microtubule-associated 75.7 82 0.0018 36.5 15.5 189 33-241 248-443 (815)
158 PF06371 Drf_GBD: Diaphanous G 75.1 17 0.00037 33.3 8.5 59 92-154 128-186 (187)
159 PF07814 WAPL: Wings apart-lik 75.0 45 0.00098 34.7 12.5 83 82-169 23-108 (361)
160 PF04499 SAPS: SIT4 phosphatas 74.7 19 0.00041 39.0 9.8 88 190-277 36-143 (475)
161 PF01347 Vitellogenin_N: Lipop 74.6 24 0.00051 39.1 10.9 131 182-331 377-519 (618)
162 KOG2259 Uncharacterized conser 74.4 3.7 7.9E-05 45.6 4.2 165 21-208 355-521 (823)
163 PF10363 DUF2435: Protein of u 74.0 7.7 0.00017 32.4 5.3 70 83-158 6-75 (92)
164 KOG1240 Protein kinase contain 74.0 16 0.00035 43.4 9.3 194 40-244 463-688 (1431)
165 COG5181 HSH155 U2 snRNP splice 73.9 21 0.00046 39.6 9.7 108 81-198 801-912 (975)
166 KOG2759 Vacuolar H+-ATPase V1 73.6 1.3E+02 0.0029 32.0 20.6 254 82-342 116-408 (442)
167 KOG1943 Beta-tubulin folding c 72.7 2.1E+02 0.0046 34.0 18.0 267 87-376 551-838 (1133)
168 PF14663 RasGEF_N_2: Rapamycin 72.4 5 0.00011 34.8 3.9 78 127-217 9-86 (115)
169 KOG1967 DNA repair/transcripti 72.4 18 0.00039 41.8 9.0 146 81-234 868-1017(1030)
170 KOG1789 Endocytosis protein RM 71.8 28 0.0006 41.1 10.3 144 92-245 1737-1888(2235)
171 KOG1924 RhoA GTPase effector D 71.5 43 0.00092 38.2 11.5 171 27-248 141-324 (1102)
172 PF14666 RICTOR_M: Rapamycin-i 71.5 12 0.00026 36.5 6.7 120 192-329 86-223 (226)
173 COG5240 SEC21 Vesicle coat com 71.2 1.8E+02 0.0038 32.5 16.8 131 75-222 259-389 (898)
174 PF14726 RTTN_N: Rotatin, an a 71.0 8.8 0.00019 32.5 4.9 73 95-170 2-74 (98)
175 PF05004 IFRD: Interferon-rela 70.9 1.3E+02 0.0027 30.7 17.9 190 177-379 51-261 (309)
176 PF12074 DUF3554: Domain of un 70.8 91 0.002 31.8 13.4 185 64-266 46-257 (339)
177 PF10363 DUF2435: Protein of u 69.4 14 0.0003 30.8 5.7 86 126-222 3-88 (92)
178 cd03568 VHS_STAM VHS domain fa 69.2 65 0.0014 29.0 10.6 94 58-157 18-112 (144)
179 PF12765 Cohesin_HEAT: HEAT re 68.8 7.2 0.00016 27.6 3.4 27 77-103 15-41 (42)
180 KOG1222 Kinesin associated pro 68.5 20 0.00043 38.8 7.9 116 99-222 282-397 (791)
181 PF06025 DUF913: Domain of Unk 68.4 62 0.0014 34.0 11.7 121 141-264 75-207 (379)
182 PF00790 VHS: VHS domain; Int 65.1 62 0.0013 28.8 9.5 80 75-157 37-120 (140)
183 smart00638 LPD_N Lipoprotein N 65.0 69 0.0015 35.2 11.8 79 253-331 393-475 (574)
184 KOG1967 DNA repair/transcripti 64.5 34 0.00074 39.6 9.2 149 31-189 859-1015(1030)
185 KOG1048 Neural adherens juncti 64.0 2.2E+02 0.0048 32.5 15.3 170 90-263 529-706 (717)
186 PF08045 CDC14: Cell division 64.0 58 0.0013 32.4 9.8 89 184-272 106-195 (257)
187 KOG3036 Protein involved in ce 63.8 96 0.0021 30.9 11.0 95 187-284 97-197 (293)
188 cd03561 VHS VHS domain family; 63.7 57 0.0012 28.7 9.0 79 76-157 33-114 (133)
189 PF06371 Drf_GBD: Diaphanous G 62.8 22 0.00048 32.6 6.4 110 81-197 67-186 (187)
190 KOG1243 Protein kinase [Genera 61.4 15 0.00032 41.2 5.6 222 29-275 283-506 (690)
191 cd03567 VHS_GGA VHS domain fam 60.5 1.3E+02 0.0028 27.0 10.9 93 58-156 19-117 (139)
192 KOG1078 Vesicle coat complex C 60.3 1.2E+02 0.0026 34.8 12.3 217 76-331 279-495 (865)
193 PF11841 DUF3361: Domain of un 59.4 1.5E+02 0.0032 27.4 14.5 118 120-241 5-131 (160)
194 smart00638 LPD_N Lipoprotein N 58.5 68 0.0015 35.2 10.3 106 77-206 443-552 (574)
195 KOG2137 Protein kinase [Signal 58.2 40 0.00086 38.0 8.2 145 37-197 347-495 (700)
196 smart00288 VHS Domain present 58.2 1.3E+02 0.0029 26.5 10.3 93 58-156 18-112 (133)
197 PF01347 Vitellogenin_N: Lipop 57.7 97 0.0021 34.2 11.5 148 16-194 417-583 (618)
198 KOG1077 Vesicle coat complex A 57.5 3.5E+02 0.0075 31.1 26.7 83 173-264 333-415 (938)
199 COG5240 SEC21 Vesicle coat com 57.5 70 0.0015 35.5 9.7 114 91-211 442-566 (898)
200 KOG1243 Protein kinase [Genera 57.4 52 0.0011 37.0 8.9 114 118-241 285-398 (690)
201 cd03569 VHS_Hrs_Vps27p VHS dom 56.9 1.5E+02 0.0032 26.6 11.0 76 78-156 39-115 (142)
202 PF01603 B56: Protein phosphat 56.8 70 0.0015 33.9 9.7 143 55-210 232-382 (409)
203 KOG2032 Uncharacterized conser 54.8 1E+02 0.0023 33.4 10.4 116 76-199 254-372 (533)
204 cd03561 VHS VHS domain family; 53.6 74 0.0016 28.0 7.9 69 173-241 41-112 (133)
205 PF13251 DUF4042: Domain of un 52.1 1.3E+02 0.0029 28.2 9.7 115 82-201 42-177 (182)
206 cd03569 VHS_Hrs_Vps27p VHS dom 52.0 89 0.0019 28.1 8.2 69 173-241 45-114 (142)
207 COG5593 Nucleic-acid-binding p 51.8 15 0.00032 40.0 3.5 127 81-222 192-324 (821)
208 PF08167 RIX1: rRNA processing 51.6 1.2E+02 0.0027 27.7 9.3 121 28-158 19-146 (165)
209 PF10274 ParcG: Parkin co-regu 51.4 43 0.00093 31.6 6.3 89 78-176 36-124 (183)
210 KOG1517 Guanine nucleotide bin 50.9 5.2E+02 0.011 31.1 18.8 216 55-284 448-671 (1387)
211 PF09759 Atx10homo_assoc: Spin 50.6 1.3E+02 0.0028 25.7 8.4 64 185-249 2-68 (102)
212 KOG0414 Chromosome condensatio 50.4 5.4E+02 0.012 31.2 19.4 110 41-158 314-431 (1251)
213 KOG0392 SNF2 family DNA-depend 49.6 47 0.001 39.9 7.3 124 39-170 816-940 (1549)
214 KOG0891 DNA-dependent protein 49.4 1.6E+02 0.0034 38.3 12.2 223 82-331 531-763 (2341)
215 KOG0915 Uncharacterized conser 49.1 6.3E+02 0.014 31.6 18.6 184 35-228 1035-1232(1702)
216 KOG2933 Uncharacterized conser 48.7 62 0.0013 33.2 7.2 133 43-193 92-229 (334)
217 PF04118 Dopey_N: Dopey, N-ter 48.6 1.1E+02 0.0023 31.3 9.1 102 44-153 143-252 (307)
218 PF04078 Rcd1: Cell differenti 48.3 1.9E+02 0.0041 28.9 10.5 103 187-292 68-176 (262)
219 KOG2122 Beta-catenin-binding p 47.1 1.3E+02 0.0027 37.2 10.2 178 79-266 393-585 (2195)
220 cd03568 VHS_STAM VHS domain fa 47.1 1.6E+02 0.0035 26.5 9.1 65 177-241 45-110 (144)
221 PF11865 DUF3385: Domain of un 46.4 20 0.00043 32.9 3.1 36 295-331 4-40 (160)
222 PF04063 DUF383: Domain of unk 45.8 73 0.0016 30.2 7.0 97 127-225 53-160 (192)
223 smart00288 VHS Domain present 45.3 2.1E+02 0.0047 25.1 9.6 68 174-241 42-111 (133)
224 PF12530 DUF3730: Protein of u 44.7 3E+02 0.0065 26.6 13.6 128 88-241 9-151 (234)
225 KOG2021 Nuclear mRNA export fa 44.6 5.6E+02 0.012 29.7 14.5 77 181-266 17-98 (980)
226 PF00790 VHS: VHS domain; Int 44.3 1.4E+02 0.0029 26.5 8.2 68 174-241 47-118 (140)
227 PF09759 Atx10homo_assoc: Spin 43.6 65 0.0014 27.5 5.6 57 228-284 2-59 (102)
228 KOG3036 Protein involved in ce 43.5 63 0.0014 32.2 6.1 143 64-247 102-253 (293)
229 PF11707 Npa1: Ribosome 60S bi 43.3 3.8E+02 0.0082 27.4 16.1 190 12-206 75-307 (330)
230 PF12530 DUF3730: Protein of u 43.0 3.2E+02 0.0069 26.4 16.8 209 41-268 2-218 (234)
231 KOG1949 Uncharacterized conser 42.9 2.1E+02 0.0045 32.8 10.6 159 30-204 165-337 (1005)
232 PF14663 RasGEF_N_2: Rapamycin 42.4 1.5E+02 0.0033 25.5 7.9 85 173-269 12-96 (115)
233 PF12765 Cohesin_HEAT: HEAT re 41.8 20 0.00044 25.3 1.9 30 121-150 13-42 (42)
234 PF08623 TIP120: TATA-binding 41.6 65 0.0014 30.0 5.8 55 56-111 42-96 (169)
235 PF14225 MOR2-PAG1_C: Cell mor 41.3 3.7E+02 0.0081 26.7 13.2 181 205-437 23-218 (262)
236 PF12331 DUF3636: Protein of u 40.3 33 0.00072 31.3 3.5 32 422-453 109-140 (149)
237 KOG1517 Guanine nucleotide bin 39.8 2.9E+02 0.0062 33.1 11.4 154 55-213 571-747 (1387)
238 PF08389 Xpo1: Exportin 1-like 39.4 83 0.0018 27.1 6.0 65 78-150 80-148 (148)
239 KOG2025 Chromosome condensatio 37.7 1.5E+02 0.0032 33.8 8.5 126 44-194 90-218 (892)
240 PF10165 Ric8: Guanine nucleot 37.6 4.5E+02 0.0097 28.2 12.2 45 222-266 42-87 (446)
241 KOG1991 Nuclear transport rece 37.2 7.8E+02 0.017 29.3 22.6 93 177-271 470-565 (1010)
242 PF11894 DUF3414: Protein of u 37.0 3.7E+02 0.008 34.0 13.0 171 124-334 902-1086(1691)
243 KOG0301 Phospholipase A2-activ 36.6 4E+02 0.0087 30.2 11.5 100 314-441 600-706 (745)
244 PF06025 DUF913: Domain of Unk 36.1 1.2E+02 0.0027 31.8 7.5 75 90-168 119-197 (379)
245 KOG2213 Apoptosis inhibitor 5/ 34.9 1.2E+02 0.0027 32.1 7.0 118 93-222 37-162 (460)
246 PF04388 Hamartin: Hamartin pr 33.9 2.7E+02 0.0059 31.6 10.3 155 82-261 6-163 (668)
247 KOG2011 Sister chromatid cohes 33.8 1.5E+02 0.0033 35.2 8.3 196 10-240 228-434 (1048)
248 COG5098 Chromosome condensatio 33.7 1.2E+02 0.0026 34.5 7.1 71 81-157 347-418 (1128)
249 COG5209 RCD1 Uncharacterized p 33.6 2.2E+02 0.0048 28.1 8.1 116 135-252 109-229 (315)
250 KOG0803 Predicted E3 ubiquitin 33.5 8.1E+02 0.017 30.3 14.3 234 17-263 22-330 (1312)
251 KOG2956 CLIP-associating prote 33.2 6.7E+02 0.015 27.3 12.6 161 66-241 271-435 (516)
252 KOG1566 Conserved protein Mo25 33.2 5.7E+02 0.012 26.5 20.1 240 117-460 70-315 (342)
253 PF14500 MMS19_N: Dos2-interac 32.7 5E+02 0.011 25.7 13.4 234 173-446 3-246 (262)
254 PF11865 DUF3385: Domain of un 32.4 87 0.0019 28.6 5.1 78 31-109 78-157 (160)
255 cd03572 ENTH_epsin_related ENT 32.3 3.5E+02 0.0076 23.8 9.8 86 45-136 6-92 (122)
256 KOG1949 Uncharacterized conser 31.3 2.5E+02 0.0054 32.1 9.0 171 59-241 144-331 (1005)
257 KOG0915 Uncharacterized conser 30.3 4.8E+02 0.01 32.5 11.5 144 56-205 1013-1167(1702)
258 cd03567 VHS_GGA VHS domain fam 30.2 1.2E+02 0.0025 27.3 5.4 71 126-198 38-116 (139)
259 KOG3961 Uncharacterized conser 30.2 1.3E+02 0.0027 29.5 5.7 67 41-111 116-186 (262)
260 PF04510 DUF577: Family of unk 28.6 1.8E+02 0.004 27.2 6.4 91 126-222 3-95 (174)
261 KOG3723 PH domain protein Melt 28.1 9E+02 0.019 27.2 14.6 63 149-222 185-247 (851)
262 KOG0567 HEAT repeat-containing 27.9 2.1E+02 0.0045 28.9 7.0 69 69-154 211-279 (289)
263 smart00802 UME Domain in UVSB 27.8 1.8E+02 0.0039 24.9 5.9 83 247-337 3-89 (107)
264 PF13764 E3_UbLigase_R4: E3 ub 27.7 7.9E+02 0.017 28.7 12.6 154 100-265 142-331 (802)
265 PF08389 Xpo1: Exportin 1-like 27.4 2.6E+02 0.0056 23.9 7.2 53 55-109 2-54 (148)
266 COG5369 Uncharacterized conser 27.0 1.7E+02 0.0036 32.5 6.6 167 118-290 423-600 (743)
267 PF09758 FPL: Uncharacterised 26.8 79 0.0017 28.9 3.7 125 190-325 5-142 (149)
268 PF08713 DNA_alkylation: DNA a 26.5 99 0.0021 28.8 4.5 69 79-158 119-187 (213)
269 KOG1525 Sister chromatid cohes 26.5 9.4E+02 0.02 29.7 13.3 249 44-329 149-403 (1266)
270 KOG2734 Uncharacterized conser 25.5 9E+02 0.019 26.3 15.2 135 146-284 104-255 (536)
271 PF12074 DUF3554: Domain of un 25.5 1.4E+02 0.003 30.5 5.7 66 42-111 167-237 (339)
272 cd00197 VHS_ENTH_ANTH VHS, ENT 25.4 4.1E+02 0.0088 22.3 10.7 75 76-153 33-113 (115)
273 KOG1822 Uncharacterized conser 25.3 1.6E+03 0.034 29.1 15.4 107 212-333 877-990 (2067)
274 cd00872 PI3Ka_I Phosphoinositi 25.3 1.2E+02 0.0026 28.3 4.7 100 4-138 18-117 (171)
275 PF03130 HEAT_PBS: PBS lyase H 24.6 1E+02 0.0023 19.3 2.9 13 319-331 2-14 (27)
276 cd03572 ENTH_epsin_related ENT 24.2 1.4E+02 0.0031 26.3 4.7 47 189-241 21-67 (122)
277 PF08506 Cse1: Cse1; InterPro 24.1 1.7E+02 0.0036 30.7 6.0 70 31-104 301-370 (370)
278 PF12397 U3snoRNP10: U3 small 23.7 2.4E+02 0.0051 24.1 6.1 75 77-159 3-78 (121)
279 KOG4646 Uncharacterized conser 23.6 2.5E+02 0.0055 25.7 6.1 85 180-266 28-112 (173)
280 COG5656 SXM1 Importin, protein 23.5 1.2E+03 0.026 27.1 21.5 116 30-150 451-566 (970)
281 PF08167 RIX1: rRNA processing 23.0 3.7E+02 0.0081 24.4 7.5 68 173-242 29-98 (165)
282 PF08324 PUL: PUL domain; Int 22.9 7E+02 0.015 24.1 12.6 124 84-213 114-246 (268)
283 KOG2005 26S proteasome regulat 22.9 4.4E+02 0.0094 30.1 8.9 76 80-157 48-127 (878)
284 PF08767 CRM1_C: CRM1 C termin 22.8 1.1E+02 0.0024 31.2 4.4 81 59-140 142-228 (319)
285 COG5330 Uncharacterized protei 22.6 9.1E+02 0.02 25.4 10.8 180 81-270 8-205 (364)
286 KOG1222 Kinesin associated pro 22.1 1.1E+03 0.024 26.1 19.2 180 79-270 303-483 (791)
287 PF09268 Clathrin-link: Clathr 21.9 64 0.0014 20.3 1.4 20 125-144 2-21 (24)
288 PF08506 Cse1: Cse1; InterPro 21.7 5.5E+02 0.012 26.9 9.3 138 82-235 212-369 (370)
289 PF09324 DUF1981: Domain of un 21.4 3.7E+02 0.0079 21.8 6.4 64 81-152 18-85 (86)
290 KOG1566 Conserved protein Mo25 21.2 6.3E+02 0.014 26.1 9.1 122 29-158 156-289 (342)
291 KOG2758 Translation initiation 21.1 4.6E+02 0.0099 27.4 8.1 105 82-203 321-428 (432)
292 PF12331 DUF3636: Protein of u 20.2 1.6E+02 0.0036 26.8 4.4 39 226-264 108-147 (149)
293 COG5369 Uncharacterized conser 20.1 6E+02 0.013 28.4 9.1 140 224-375 401-545 (743)
No 1
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-92 Score=685.97 Aligned_cols=456 Identities=41% Similarity=0.647 Sum_probs=428.2
Q ss_pred CCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchH-----HH---HHHHHHHHhccccccchh
Q 012448 7 MDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLE-----DT---LVVCLERIFKTKYGASLI 78 (463)
Q Consensus 7 ~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~-----~~---~~~vL~~il~~~~~~~l~ 78 (463)
|+++++|+++|.++|+|||.+++-.+++++..++||++++.|+...|.++.. +. ++.||+|+|++++|++++
T Consensus 1 aealalLfdaAfeeAhleeaqaehSVkealdlfeLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkakegahla 80 (524)
T KOG4413|consen 1 AEALALLFDAAFEEAHLEEAQAEHSVKEALDLFELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKEGAHLA 80 (524)
T ss_pred CchHHHHHHHHHhhcCchhhhhHhHHHHhcccchhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhccchhhc
Confidence 6899999999999999999999999999999999999999999874443322 23 666999999999999999
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448 79 PHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN 158 (463)
Q Consensus 79 ~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~ 158 (463)
+||++-||+||.||+..||.|+|+++++++++.+.++..-.++++|++++++++.||+.+|.+||+.|++.+++|+.++.
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 99999999999999999999999999999999875443366788999999999999999999999999999999999999
Q ss_pred CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHH
Q 012448 159 GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYE 238 (463)
Q Consensus 159 ~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~e 238 (463)
|+++||+.+..+++++.++.+++|+++|+|||+++++|+++|++.+++|..||+++.++.|+++|.|+||++||+|+.++
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcc-hhhhhhhHHHHHHHhccccCCChh
Q 012448 239 LAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFID-ESSAKTVISAIDGRLGFLQSQDSD 317 (463)
Q Consensus 239 La~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~-~~~~k~~p~~l~~~f~~~~~~d~~ 317 (463)
|+++.||.+|+.+.|+++.|+++|.+.++||+..-|++|+.|......+++++.. +.|.. ||.++++.|+|++++|++
T Consensus 241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicea-liiaidgsfEmiEmnDpd 319 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEA-LIIAIDGSFEMIEMNDPD 319 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHH-HHHHHHhhHHhhhcCCch
Confidence 9999999999999999999999999999999999889998777665444666533 33555 999999999999999999
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHH
Q 012448 318 ECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLI 397 (463)
Q Consensus 318 ~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ 397 (463)
.+++|+||+|++||+++|+++++++.++.++|++.++|+...++++..++|||++|.+..|.+.++|.+..+|++++.+|
T Consensus 320 aieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli 399 (524)
T KOG4413|consen 320 AIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI 399 (524)
T ss_pred HHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence 99999999999999999999999997789999999999999999999999999999999998889999889999999999
Q ss_pred HHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhhhccchhHhhcCCCccCCC
Q 012448 398 YEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463 (463)
Q Consensus 398 ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K 463 (463)
|.+...|.+.+|+++|++++ |||||||||||+.+++|++|||++++|.++||||||++||++|++|
T Consensus 400 fdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaK 466 (524)
T KOG4413|consen 400 FDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAK 466 (524)
T ss_pred HHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHH
Confidence 99999999999999999999 9999999999999999999999999999999999999999999987
No 2
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=100.00 E-value=1.1e-84 Score=695.51 Aligned_cols=433 Identities=32% Similarity=0.502 Sum_probs=405.7
Q ss_pred hHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhh
Q 012448 10 SNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGL 89 (463)
Q Consensus 10 ~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL 89 (463)
+..|...+.++++||+-+++-.+..+++.++.+.||+||++++ ++..+.+|.+|++||++..|..+.++|.++|++||
T Consensus 9 l~~l~~~~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~~--~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL 86 (503)
T PF10508_consen 9 LEELSSKAERLEALPELKTELSSSPFLERLPEPVLFDCLNTSN--REQVELICDILKRLLSALSPDSLLPQYQPFLQRGL 86 (503)
T ss_pred HHHHhcccchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhcC--hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHh
Confidence 4678889999999999999999999999999999999999886 88999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCc
Q 012448 90 TADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNK 169 (463)
Q Consensus 90 ~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~ 169 (463)
+||++.||++++++++++++++ .. .++++.++++++.|+.||+++|.+|++.|+++|++++++++|++.+|+++.+
T Consensus 87 ~h~~~~Vr~l~l~~l~~~~~~~---~~-~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~ 162 (503)
T PF10508_consen 87 THPSPKVRRLALKQLGRIARHS---EG-AAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLL 162 (503)
T ss_pred cCCCHHHHHHHHHHHHHHhcCC---HH-HHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchH
Confidence 9999999999999999999988 77 8999999999999999999999999999999999999999999999999998
Q ss_pred chhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHH
Q 012448 170 AATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFL 249 (463)
Q Consensus 170 ~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L 249 (463)
. +|.+.+.++|+++|+|||+++++|+++|++++++|.++|+|+.+++||++ +|+|+|+||+|++++||+++||++||
T Consensus 163 ~--~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL 239 (503)
T PF10508_consen 163 S--KLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAETPHGLQYL 239 (503)
T ss_pred H--HHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHH
Confidence 8 99977766699999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchh-hhhhhHHHHHHHhccccCCChhhhhHHHHHHHh
Q 012448 250 SRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDES-SAKTVISAIDGRLGFLQSQDSDECESALEALGQ 328 (463)
Q Consensus 250 ~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~-~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~ 328 (463)
+++|++++|++++.+.++|| |.++++++|+|++||++..+ +++ +...||.|++.+|++++++|++++++|+||||+
T Consensus 240 ~~~gi~~~L~~~l~~~~~dp--~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ 316 (503)
T PF10508_consen 240 EQQGIFDKLSNLLQDSEEDP--RLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQ 316 (503)
T ss_pred HhCCHHHHHHHHHhccccCC--cccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 99999999999999999999 55889999999999887653 222 455699999999999999999999999999999
Q ss_pred hcCCHHHHHHHhhcCchhHHHHHHHHHhhccchh---hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCC
Q 012448 329 IGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGK---QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSS 405 (463)
Q Consensus 329 Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~---k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~ 405 (463)
||+|++||++|..+.++.++++++++++++++++ |+|+||||++||+.++. .++++ +..++ +.||+++
T Consensus 317 igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~-------~~~~~-i~~~~-~~w~~~~ 387 (503)
T PF10508_consen 317 IGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD-------RQDND-ILSIT-ESWYESL 387 (503)
T ss_pred HhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC-------CchHH-HHHHH-HHHHHHh
Confidence 9999999999944349999999999999999987 99999999999987632 23444 66677 8899988
Q ss_pred CCChhH-HHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhhhccchhHhhcCCCccCCC
Q 012448 406 KLTPSG-LFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQK 463 (463)
Q Consensus 406 ~~~p~~-~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K 463 (463)
++.|.. ++++++ |||||+|+|+|++|++||.||||+++|+++|||+|||+||++|++|
T Consensus 388 ~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K 447 (503)
T PF10508_consen 388 SGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTK 447 (503)
T ss_pred cCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCH
Confidence 899999 999999 9999999999999999999999999999999999999999999998
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=4.5e-15 Score=156.25 Aligned_cols=284 Identities=13% Similarity=0.154 Sum_probs=227.0
Q ss_pred hHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---c-hhhchHHHHHHhhc-CCCHHHHHHHHHHHHHHHhCCchhH
Q 012448 41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---S-LIPHYMPFVQVGLT-ADSHSVKRLACKTVTCLLEDSDLEA 115 (463)
Q Consensus 41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~-l~~~~~~~l~~gL~-h~~~~Vr~Lal~~l~~i~~~~~~~~ 115 (463)
.+.+...+.+.+ +...-.+...++++++....+ . +-..+.+-++.+|. +.+|.++--++|++.+|+... .
T Consensus 68 ~~~~~~~~~S~~--~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt---s 142 (514)
T KOG0166|consen 68 LELMLAALYSDD--PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT---S 142 (514)
T ss_pred hHHHHHHHhCCC--HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc---h
Confidence 677777777755 555556666888888665433 2 23367999999997 556999999999999999887 6
Q ss_pred HHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCc-hhHHHHHHHH
Q 012448 116 SCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSS-LGRVRVLSLI 193 (463)
Q Consensus 116 ~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~-~vR~Rv~el~ 193 (463)
. ..+.++++|.+|.++.|+.+++..|...|+-+|.+|+.+++.+ +.+.+.+++. .|..++...+. ...+.+-=++
T Consensus 143 e-~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~--pLl~~l~~~~~~~~lRn~tW~L 219 (514)
T KOG0166|consen 143 E-QTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALD--PLLRLLNKSDKLSMLRNATWTL 219 (514)
T ss_pred h-hccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchH--HHHHHhccccchHHHHHHHHHH
Confidence 6 8889999999999999999999999999999999999999988 6888999988 77745443333 5777888999
Q ss_pred HHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhh
Q 012448 194 VKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILR 272 (463)
Q Consensus 194 v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r 272 (463)
.++++.+.-......-+.+||.+...+.+ +|.-|..++.--++.|+. +++..+++.+.|++.+|++.+...+ +-++
T Consensus 220 sNlcrgk~P~P~~~~v~~iLp~L~~ll~~-~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~--~~v~ 296 (514)
T KOG0166|consen 220 SNLCRGKNPSPPFDVVAPILPALLRLLHS-TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSS--PKVV 296 (514)
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCC--cccc
Confidence 99999996555555566899999999999 999999999999999997 9999999999999999999998643 2246
Q ss_pred hhhhhHhhhhccccc--cchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhh
Q 012448 273 SRAIMISGRLLSKDD--SHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLL 341 (463)
Q Consensus 273 ~~aili~g~i~~f~~--~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~ 341 (463)
+||++..|.|..-.+ +-..++. +.+|.+.. + +-.++..+++..|.||+++|+. +.+..+.+..
T Consensus 297 ~PaLRaiGNIvtG~d~QTq~vi~~---~~L~~l~~-l--l~~s~~~~ikkEAcW~iSNItAG~~~qiqaVid 362 (514)
T KOG0166|consen 297 TPALRAIGNIVTGSDEQTQVVINS---GALPVLSN-L--LSSSPKESIKKEACWTISNITAGNQEQIQAVID 362 (514)
T ss_pred cHHHhhccceeeccHHHHHHHHhc---ChHHHHHH-H--hccCcchhHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 799999999887111 1222322 33444443 3 1236777899999999999998 7778877775
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.59 E-value=2.4e-12 Score=153.16 Aligned_cols=392 Identities=15% Similarity=0.139 Sum_probs=262.3
Q ss_pred HHHhhhhccCCCCCChHHHHHHH--hcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc----chhhchHHHHHH
Q 012448 14 LDSASDFAYHPGVQNDAAAKKFL--DRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA----SLIPHYMPFVQV 87 (463)
Q Consensus 14 ~~~~~~~a~~p~~~s~~~~~~~~--~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~----~l~~~~~~~l~~ 87 (463)
+..-.+|+.- +++ .+.++ ...-+|.|++.|.+.+ +..+..++.+|..+ ..+.. -+.....+.|+.
T Consensus 36 l~~Lr~Lak~----~~e-nR~~Ia~~aGaIP~LV~lL~sg~--~~vk~nAaaaL~nL--S~~e~nk~~Iv~~GaIppLV~ 106 (2102)
T PLN03200 36 TARLLELAKT----REE-ARKAIGSHSQAMPLLVSLLRSGT--LGAKVNAAAVLGVL--CKEEDLRVKVLLGGCIPPLLS 106 (2102)
T ss_pred HHHHHHHHhc----ChH-HHHHHHHccCcHHHHHHHHcCCC--HHHHHHHHHHHHHH--hcCHHHHHHHHHcCChHHHHH
Confidence 3334445544 543 35555 3667999999998766 77888888888887 44432 234667899999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCC---chHHHHHHHHHHHHHhCCCCCc-ccc
Q 012448 88 GLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLING---NEEVATASMDAIKKLAGFPNGI-DII 163 (463)
Q Consensus 88 gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~---d~~va~~A~~~L~~lak~~~~l-~~l 163 (463)
.|++.++..|+.|++++..+..+..++.. -..+++..|.+|.++.++.++ |..+-+.|+.+|..++.++++. +.+
T Consensus 107 LL~sGs~eaKe~AA~AL~sLS~~~~~D~~-~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~I 185 (2102)
T PLN03200 107 LLKSGSAEAQKAAAEAIYAVSSGGLSDHV-GSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSAT 185 (2102)
T ss_pred HHHCCCHHHHHHHHHHHHHHHcCcchhhh-hhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHH
Confidence 99999999999999999999987521122 346778899999999999998 4456677889999999999987 677
Q ss_pred ccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-h
Q 012448 164 FPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-I 242 (463)
Q Consensus 164 ~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t 242 (463)
++.+.++ .|...+.+.++..+..+..++..+++++++..+.+++.|.++.++..|.+.+|.-+|-+|+-.|+.|+. +
T Consensus 186 IeaGaVp--~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s 263 (2102)
T PLN03200 186 LEAGGVD--ILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQS 263 (2102)
T ss_pred HHcCCHH--HHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCC
Confidence 8999999 888899899999999999999999999999999999999999999999753778999999999999999 8
Q ss_pred HHHHHHHHhcchHHHHHHHhcccccchh-------hhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCC-
Q 012448 243 QHSAEFLSRTTLLQLLCSLIGNSATETI-------LRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQ- 314 (463)
Q Consensus 243 ~~g~~~L~~~gi~~~L~~~i~~~~~dpl-------~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~- 314 (463)
++..+.+.+.|++..|++.+.....+-. .+..++.+.+-+ .++.+.++..+-+.+++.
T Consensus 264 ~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNI--------------cgg~~~ll~~L~~ll~s~r 329 (2102)
T PLN03200 264 KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANI--------------CGGMSALILYLGELSESPR 329 (2102)
T ss_pred HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHH--------------hCCchhhHHHHHHhhcccc
Confidence 9999999999999999999875332211 011111111111 111222232222222332
Q ss_pred ChhhhhHHHHHHHhh---cCCHHHH-HHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHH
Q 012448 315 DSDECESALEALGQI---GSSIQGA-TLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAE 390 (463)
Q Consensus 315 d~~~~~~A~dtlG~I---gss~eGk-~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e 390 (463)
|......+.|++.-+ ......+ +.+.. +.....+++...+.-....+.+...||+.+++..
T Consensus 330 d~~~~ada~gALayll~l~d~~~~~~~~i~~--~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~------------- 394 (2102)
T PLN03200 330 SPAPIADTLGALAYALMVFDSSAESTRAFDP--TVIEQILVKLLKPRDTKLVQERIIEALASLYGNA------------- 394 (2102)
T ss_pred hHHHHHHHHhhHHHHHHhcCCchhhhhhccc--cccHHHHHHHhCCCCCchhHHHHHHHHHHhcCCh-------------
Confidence 344444455555444 2211111 11111 1122222222221111112455566666655532
Q ss_pred HHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhhhccchhHhh
Q 012448 391 ESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTV 454 (463)
Q Consensus 391 ~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~~gfie~l 454 (463)
.+.+++++ .+....+.++. -+-.|.|..+-.-|+.++.+....+......|.+++|
T Consensus 395 -~l~~~L~~-------~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~L 451 (2102)
T PLN03200 395 -YLSRKLNH-------AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLL 451 (2102)
T ss_pred -HHHHHHHh-------ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHH
Confidence 12333322 23345566777 5778999999999999998877765555444444444
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.47 E-value=1.2e-10 Score=139.01 Aligned_cols=419 Identities=13% Similarity=0.084 Sum_probs=297.0
Q ss_pred CCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc-----hhhch
Q 012448 7 MDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS-----LIPHY 81 (463)
Q Consensus 7 ~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-----l~~~~ 81 (463)
+++.+..-+++..+.+- ...+++.-+.+++..-+|.|+..|.+.+ +..++.++..|+.+. ....+ .....
T Consensus 415 ~~~~evQ~~Av~aL~~L-~~~~~e~~~aIi~~ggIp~LV~LL~s~s--~~iQ~~A~~~L~nLa--~~ndenr~aIieaGa 489 (2102)
T PLN03200 415 MATADVQEELIRALSSL-CCGKGGLWEALGGREGVQLLISLLGLSS--EQQQEYAVALLAILT--DEVDESKWAITAAGG 489 (2102)
T ss_pred cCCHHHHHHHHHHHHHH-hCCCHHHHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHH--cCCHHHHHHHHHCCC
Confidence 44555555666654332 2227888999999999999999999865 677888888898883 33322 33467
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC--
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG-- 159 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~-- 159 (463)
.+.|+..|.++++.+|+-|+|+++++..++ .. ....+.++|.++.++..|.+++..+.+.|+.+|..+.++.+.
T Consensus 490 IP~LV~LL~s~~~~iqeeAawAL~NLa~~~---~q-ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~ 565 (2102)
T PLN03200 490 IPPLVQLLETGSQKAKEDSATVLWNLCCHS---ED-IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT 565 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCc---HH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH
Confidence 999999999999999999999999998876 44 666777899999999999999999999999999999643220
Q ss_pred -----------------------------------c-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHH
Q 012448 160 -----------------------------------I-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSV 203 (463)
Q Consensus 160 -----------------------------------l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~ 203 (463)
. +..-..+.++ .|.+++.+.++.+|-.++.++.+++.-+++.
T Consensus 566 I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~--~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~ 643 (2102)
T PLN03200 566 ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALR--TLIQLLSSSKEETQEKAASVLADIFSSRQDL 643 (2102)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHH--HHHHHHcCCCHHHHHHHHHHHHHHhcCChHH
Confidence 0 0011345677 8888899999999999999999999999999
Q ss_pred HHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh--hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhh
Q 012448 204 ASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE--IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGR 281 (463)
Q Consensus 204 ~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~--t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~ 281 (463)
-+.++..|.++.++..|.+ .+.-++..+.--|..++. +++...++++.|++..|++.+... |+-+...++.+.+.
T Consensus 644 ~~avv~agaIpPLV~LLss-~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~--d~~v~e~Al~ALan 720 (2102)
T PLN03200 644 CESLATDEIINPCIKLLTN-NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS--SIEVAEQAVCALAN 720 (2102)
T ss_pred HHHHHHcCCHHHHHHHHhc-CChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC--ChHHHHHHHHHHHH
Confidence 9999999999999999999 888889999999999997 444457889999999999999764 33334566666666
Q ss_pred hcccccc-chhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHH----HHhhcCchhHHHHHHHHHh
Q 012448 282 LLSKDDS-HMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGAT----LLLLCLPPAARHVIDAAFD 356 (463)
Q Consensus 282 i~~f~~~-~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~----~L~~~~~~~~~~~l~~~~~ 356 (463)
+...++. ..+. -..++|++++ ++.++.+..+..|.|+|.++++.-.--+ .++. -..+..++...-.
T Consensus 721 Ll~~~e~~~ei~---~~~~I~~Lv~----lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~--~g~v~~l~~~L~~ 791 (2102)
T PLN03200 721 LLSDPEVAAEAL---AEDIILPLTR----VLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQC--RGTVLALVDLLNS 791 (2102)
T ss_pred HHcCchHHHHHH---hcCcHHHHHH----HHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHH--hCcHHHHHHHHhc
Confidence 6654332 2333 2344666555 5678999999999999999998433222 2222 1233333332222
Q ss_pred hccchh-hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhC-CCCChhHHHHHHhcCCHHHHHHHHHHHHHh
Q 012448 357 RQGHGK-QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRS-SKLTPSGLFLSVLQQAAEIRLAGYRMITGL 434 (463)
Q Consensus 357 ~~~~~~-k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~-~~~~p~~~~~~~~qpF~elr~A~~~~l~~l 434 (463)
.-.... -.-+|++++.+...++... .+ ..-| ..+.+. .+..|+ +.-+.---|+++-.|.++|..+
T Consensus 792 ~~~~~~~~~~al~~l~~l~~~~~~~~------~~----~~~~-~~~~e~p~~l~~l--~~~l~~~~p~~~~kai~il~~~ 858 (2102)
T PLN03200 792 TDLDSSATSEALEALALLARTKGGAN------FS----HPPW-AVLAEVPSSLEPL--VRCLAEGHPLVQDKAIEILSRL 858 (2102)
T ss_pred CCcchhhHHHHHHHHHHHHhhcccCC------CC----CCch-hhHHhccCchHHH--HHHHHcCChHHHHHHHHHHHHH
Confidence 211222 3357888888887542210 00 0112 111111 112222 2333466789999999999999
Q ss_pred hcCchh--HHHhhhccchhHhhcCCCccC
Q 012448 435 VARPWC--LMELCSKQEIINTVTDASTEQ 461 (463)
Q Consensus 435 ~~~~Wg--~~~i~~~~gfie~lldr~~E~ 461 (463)
|.-+-. -..+.+.+|-|--|-||-.++
T Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 (2102)
T PLN03200 859 CRDQPVVLGDLIANASKCISSLADRIINS 887 (2102)
T ss_pred hccChhHHHHHHhcccchHHHHHHHHhhc
Confidence 986544 346678899888888875543
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=3.4e-11 Score=127.25 Aligned_cols=369 Identities=18% Similarity=0.154 Sum_probs=275.1
Q ss_pred HHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-----chhhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 012448 32 AKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-----SLIPHYMPFVQVGLTADSHSVKRLACKTVTC 106 (463)
Q Consensus 32 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-----~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~ 106 (463)
..+.+..-.+|.++.||... +.+..+-.++-+|..+ +.... .+..+..+.+..+|.+|++.|++-|.|++|+
T Consensus 102 i~~vi~~G~v~~lV~~l~~~-~~~~lq~eAAWaLTnI--Asgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgN 178 (514)
T KOG0166|consen 102 IDEVIQSGVVPRLVEFLSRD-DNPTLQFEAAWALTNI--ASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGN 178 (514)
T ss_pred HHHHHHcCcHHHHHHHHccC-CChhHHHHHHHHHHHH--hcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhc
Confidence 45555569999999999743 3477777777788888 44333 2344558889999999999999999999999
Q ss_pred HHhCCchhHHHHHHHhhccCcHHHHHHhhcCCch-HHHHHHHHHHHHHhCCCC-CccccccCCCcchhhHhhHhhcCCch
Q 012448 107 LLEDSDLEASCALQLLIDYEIYPLLLDCLINGNE-EVATASMDAIKKLAGFPN-GIDIIFPADNKAATDLGNLVAQCSSL 184 (463)
Q Consensus 107 i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~-~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L~~~~~~~~~~ 184 (463)
++.++ .. +...+.+.|++..++..+..++. +.-+.+.-+|++++++.. --+.-.-...++ .|..++-+.|..
T Consensus 179 Iagds---~~-~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp--~L~~ll~~~D~~ 252 (514)
T KOG0166|consen 179 IAGDS---PD-CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP--ALLRLLHSTDEE 252 (514)
T ss_pred cccCC---hH-HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH--HHHHHHhcCCHH
Confidence 99988 77 99999999999999999988886 888999999999999883 211111123445 566688899999
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhc
Q 012448 185 GRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIG 263 (463)
Q Consensus 185 vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~ 263 (463)
|..=+|-.+..++..+.|.-++++++|..++++..|.. ...-++.-|+-.+..++. +..-.+-+.+.|.+..|..++.
T Consensus 253 Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~-~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~ 331 (514)
T KOG0166|consen 253 VLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH-SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLS 331 (514)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC-CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhc
Confidence 99999999999999999999999999999999999999 998899999999999988 8888899999999999999999
Q ss_pred ccccchhhhhhhhhHhhhhcccccc---chhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC--CHHHHHH
Q 012448 264 NSATETILRSRAIMISGRLLSKDDS---HMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS--SIQGATL 338 (463)
Q Consensus 264 ~~~~dpl~r~~aili~g~i~~f~~~---~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs--s~eGk~~ 338 (463)
.+..+-+ ++-|--+.+=|.+ |+. -+++| ..-+|..++ .++..|-.++--|.|+++++.+ +.+--..
T Consensus 332 ~s~~~~i-kkEAcW~iSNItA-G~~~qiqaVid---a~l~p~Li~----~l~~~ef~~rKEAawaIsN~ts~g~~~qi~y 402 (514)
T KOG0166|consen 332 SSPKESI-KKEACWTISNITA-GNQEQIQAVID---ANLIPVLIN----LLQTAEFDIRKEAAWAISNLTSSGTPEQIKY 402 (514)
T ss_pred cCcchhH-HHHHHHHHHHhhc-CCHHHHHHHHH---cccHHHHHH----HHhccchHHHHHHHHHHHhhcccCCHHHHHH
Confidence 7776664 5556655666665 332 13342 244666665 4577888899999999999987 4444455
Q ss_pred HhhcCchhHHHHHHHHHhhccchh-hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh
Q 012448 339 LLLCLPPAARHVIDAAFDRQGHGK-QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL 417 (463)
Q Consensus 339 L~~~~~~~~~~~l~~~~~~~~~~~-k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~ 417 (463)
|..+ +..++++... .....+ -..+|+++.+|+....... +.+.+. +..++ |...+ ...++.+.+--
T Consensus 403 Lv~~--giI~plcdlL--~~~D~~ii~v~Ld~l~nil~~~e~~~----~~~~n~-~~~~I-Ee~gg---ldkiE~LQ~he 469 (514)
T KOG0166|consen 403 LVEQ--GIIKPLCDLL--TCPDVKIILVALDGLENILKVGEAEK----NRGTNP-LAIMI-EEAGG---LDKIENLQSHE 469 (514)
T ss_pred HHHc--CCchhhhhcc--cCCChHHHHHHHHHHHHHHHHHHHhc----cccccH-HHHHH-HHccC---hhHHHHhhccc
Confidence 5553 3555555544 222222 6689999999999762110 000022 55666 76555 45555333222
Q ss_pred cCCHHHHHHHHHHHHHh
Q 012448 418 QQAAEIRLAGYRMITGL 434 (463)
Q Consensus 418 qpF~elr~A~~~~l~~l 434 (463)
=.||.-.||.++..=
T Consensus 470 --n~~Iy~~A~~II~~y 484 (514)
T KOG0166|consen 470 --NEEIYKKAYKIIDTY 484 (514)
T ss_pred --cHHHHHHHHHHHHHh
Confidence 268888888887654
No 7
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.38 E-value=4.8e-10 Score=120.78 Aligned_cols=315 Identities=16% Similarity=0.209 Sum_probs=226.5
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-ccc
Q 012448 85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DII 163 (463)
Q Consensus 85 l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l 163 (463)
+-.||+..+...-.++|..+.++++.. . ...+ .+++.+.+..+|..|+..|..-+.+.|.++++++.+. +.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~---~--~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL---S--PDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc---C--HHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 778888888888899999999999865 2 2222 5578899999999999999999999999999999875 788
Q ss_pred ccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-h
Q 012448 164 FPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-I 242 (463)
Q Consensus 164 ~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t 242 (463)
.+.++++ .+...+...|..|.--+..++.+++++++.. +.+.++++.+.+...+.. .|..+|..+.|++.++++ +
T Consensus 116 ~~~~l~~--~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 116 VDNELLP--LIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHS 191 (503)
T ss_pred cCccHHH--HHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcC
Confidence 8899988 7777888999999999999999999987655 567788888888888877 688889999999999998 9
Q ss_pred HHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCC--Chhhhh
Q 012448 243 QHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQ--DSDECE 320 (463)
Q Consensus 243 ~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~--d~~~~~ 320 (463)
+..+++..+.|+++++++.+.+ +|.+++.-++-+.+-+.-...-..|+.+ ...++.+.+.+.+.-+++ .....+
T Consensus 192 ~~~~~~~~~sgll~~ll~eL~~--dDiLvqlnalell~~La~~~~g~~yL~~--~gi~~~L~~~l~~~~~dp~~~~~~l~ 267 (503)
T PF10508_consen 192 PEAAEAVVNSGLLDLLLKELDS--DDILVQLNALELLSELAETPHGLQYLEQ--QGIFDKLSNLLQDSEEDPRLSSLLLP 267 (503)
T ss_pred HHHHHHHHhccHHHHHHHHhcC--ccHHHHHHHHHHHHHHHcChhHHHHHHh--CCHHHHHHHHHhccccCCcccchhhh
Confidence 9999999999999999999987 9999988888777776653233455422 122334444332222222 223557
Q ss_pred HHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccc---hhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHH
Q 012448 321 SALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGH---GKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLI 397 (463)
Q Consensus 321 ~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~---~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ 397 (463)
..+..+|.++.. +..+++.. ...++...++...+ ..+..|+++|+.|-... +..+.+.......+.+.+
T Consensus 268 g~~~f~g~la~~-~~~~v~~~-----~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~--~G~~~L~~~~~~~~~~~l 339 (503)
T PF10508_consen 268 GRMKFFGNLARV-SPQEVLEL-----YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTV--EGKQLLLQKQGPAMKHVL 339 (503)
T ss_pred hHHHHHHHHHhc-ChHHHHHH-----HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH--HHHHHHHhhcchHHHHHH
Confidence 777888888885 33444433 34555555554443 33899999999987644 444444222222244343
Q ss_pred HHHHhhCCCCChhHHHHHHhcCCHHHHHHHHHHHHHh
Q 012448 398 YEVASRSSKLTPSGLFLSVLQQAAEIRLAGYRMITGL 434 (463)
Q Consensus 398 ye~~~~~~~~~p~~~~~~~~qpF~elr~A~~~~l~~l 434 (463)
.+.+...+ ..=.|+|+.+++-|..+
T Consensus 340 -~~~~~~~~-----------~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 340 -KAIGDAIK-----------SGSTELKLRALHALASI 364 (503)
T ss_pred -HHHHHHhc-----------CCchHHHHHHHHHHHHH
Confidence 44444222 33445555555555555
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=6.7e-09 Score=104.61 Aligned_cols=313 Identities=17% Similarity=0.122 Sum_probs=229.0
Q ss_pred CCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhc----cccccchhhchHHHHHHhhcCCCHHHHHHHH
Q 012448 26 VQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFK----TKYGASLIPHYMPFVQVGLTADSHSVKRLAC 101 (463)
Q Consensus 26 ~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~----~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal 101 (463)
.|+++.=+..|+.-.+|.|++.|++++ ...+.-+|-.+..+=- -+-.++.-|++.+.|+.-...+++.||..+-
T Consensus 195 Ths~EnRr~LV~aG~lpvLVsll~s~d--~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~ 272 (550)
T KOG4224|consen 195 THSRENRRVLVHAGGLPVLVSLLKSGD--LDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAG 272 (550)
T ss_pred hhhhhhhhhhhccCCchhhhhhhccCC--hhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHH
Confidence 468889999999999999999999988 5555555554433310 1112345567899999999999999999999
Q ss_pred HHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcC
Q 012448 102 KTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQC 181 (463)
Q Consensus 102 ~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~ 181 (463)
.+++.+.... . -..-++++|-+|+++..|++|-...-....-.+..|+-|+-.--.|.+++++. -|.+++...
T Consensus 273 lALrnlasdt----~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~--pLVrlL~~~ 345 (550)
T KOG4224|consen 273 LALRNLASDT----E-YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLR--PLVRLLRAG 345 (550)
T ss_pred HHHhhhcccc----h-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchh--HHHHHHhcC
Confidence 9999987654 2 44567889999999999999998888888888999998885445677888877 777666655
Q ss_pred -CchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHH
Q 012448 182 -SSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCS 260 (463)
Q Consensus 182 -~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~ 260 (463)
|+.++|-+-+.+-++|..|+..-..+.++|.++++...+.| .-+-+|--.--++..|+-...--.++...|+++.|+.
T Consensus 346 dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD-~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp 424 (550)
T KOG4224|consen 346 DNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD-GPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIP 424 (550)
T ss_pred CchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc-CChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeec
Confidence 55699999999999999999999999999999999999989 8888999888999999999999999999999999998
Q ss_pred HhcccccchhhhhhhhhHhhhhcccccc--c-hh---cchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCC-H
Q 012448 261 LIGNSATETILRSRAIMISGRLLSKDDS--H-MF---IDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSS-I 333 (463)
Q Consensus 261 ~i~~~~~dpl~r~~aili~g~i~~f~~~--~-~~---~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss-~ 333 (463)
+..+..+.--.. + ....+-++++. + +| .|+|. .+.-.++ .++..+.+.+..-.|.||+-++.-. .
T Consensus 425 ~t~s~s~Ev~gN--a--AaAL~Nlss~v~~YarviEawd~P~-~gi~g~L---~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 425 WTGSESEEVRGN--A--AAALINLSSDVEHYARVIEAWDHPV-QGIQGRL---ARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred ccCccchhhccc--H--HHHHHhhhhhhHHHHHHHHHhcCcc-hhHHHHH---HHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 876544322111 1 12222222232 1 22 34443 1122222 2456788889999999999877652 2
Q ss_pred HHHHHHhhcCchhHHHHHHHHHhh
Q 012448 334 QGATLLLLCLPPAARHVIDAAFDR 357 (463)
Q Consensus 334 eGk~~L~~~~~~~~~~~l~~~~~~ 357 (463)
.-...+.+. .+..-+.++.++.+
T Consensus 497 ~~~~~~i~~-~ddii~~~~~~~~r 519 (550)
T KOG4224|consen 497 LPLTAFIQS-SDDIIELLNDIVAR 519 (550)
T ss_pred ccHHHHHhC-chhHHHHHHHHHHH
Confidence 222333333 34444444444444
No 9
>PRK09687 putative lyase; Provisional
Probab=98.91 E-value=1.7e-07 Score=93.85 Aligned_cols=235 Identities=9% Similarity=0.020 Sum_probs=163.1
Q ss_pred HHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 012448 30 AAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLE 109 (463)
Q Consensus 30 ~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~ 109 (463)
....+..++...+.|+..|.+.+ ...+..++..|..+ .. +...+.+...++++++.||..+++.++.+-.
T Consensus 14 ~~~~~~~~~~~~~~L~~~L~d~d--~~vR~~A~~aL~~~----~~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 14 YSLYSQCKKLNDDELFRLLDDHN--SLKRISSIRVLQLR----GG----QDVFRLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred HHHHHHHhhccHHHHHHHHhCCC--HHHHHHHHHHHHhc----Cc----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 34455567778899999998766 67788888888766 22 3456667777899999999999999999643
Q ss_pred CCchhHHHHHHHhhccCcHHHHHHh-hcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHH
Q 012448 110 DSDLEASCALQLLIDYEIYPLLLDC-LINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVR 188 (463)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~li~~-l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~R 188 (463)
.. . . +...++.+... +.|++..|-..|+.+|..++.... ...+..+. .+...+.+.+..||+-
T Consensus 84 ~~----~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~--~l~~~~~D~~~~VR~~ 147 (280)
T PRK09687 84 AK----R-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVE--QSQITAFDKSTNVRFA 147 (280)
T ss_pred Cc----c-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHH--HHHHHhhCCCHHHHHH
Confidence 22 1 0 12456666654 789999999999999998864321 12233444 5555566778888888
Q ss_pred HHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhccccc
Q 012448 189 VLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSAT 267 (463)
Q Consensus 189 v~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~ 267 (463)
+...+.++. ++ ..++.++..|++ +|.-||..|++-|..+.. ++ .+++.|+..+. +.
T Consensus 148 a~~aLg~~~--~~---------~ai~~L~~~L~d-~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~--D~ 204 (280)
T PRK09687 148 VAFALSVIN--DE---------AAIPLLINLLKD-PNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQ--DK 204 (280)
T ss_pred HHHHHhccC--CH---------HHHHHHHHHhcC-CCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhc--CC
Confidence 777765553 22 356777888889 888999999999888833 32 45556666664 35
Q ss_pred chhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448 268 ETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS 331 (463)
Q Consensus 268 dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs 331 (463)
|+.+|..++...|.+.. ...+|.+++.+ +.++ ..-.|+++||.||.
T Consensus 205 ~~~VR~~A~~aLg~~~~------------~~av~~Li~~L----~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD------------KRVLSVLIKEL----KKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred ChHHHHHHHHHHHccCC------------hhHHHHHHHHH----cCCc--hHHHHHHHHHhcCC
Confidence 77788777777777654 13466666633 3443 56679999999998
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.89 E-value=5.5e-06 Score=92.11 Aligned_cols=396 Identities=15% Similarity=0.162 Sum_probs=261.9
Q ss_pred hHHHHHHhhh-hccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc----chhhchHHH
Q 012448 10 SNQLLDSASD-FAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA----SLIPHYMPF 84 (463)
Q Consensus 10 ~~~~~~~~~~-~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~----~l~~~~~~~ 84 (463)
.++|+++|.. +-|. +-+...-...++...++.|+.||+.++ .+..-.+..+|+++ +..+. -....+.+.
T Consensus 262 QeqLlrv~~~lLlNL--Aed~~ve~kM~~~~iV~~Lv~~Ldr~n--~ellil~v~fLkkL--Si~~ENK~~m~~~giV~k 335 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNL--AEDPRVELKMVNKGIVSLLVKCLDREN--EELLILAVTFLKKL--SIFKENKDEMAESGIVEK 335 (708)
T ss_pred HHHHHHHHHHHHHHH--hcChHHHHHHHhcCCHHHHHHHHcCCC--HHHHHHHHHHHHHH--cCCHHHHHHHHHcCCHHH
Confidence 4678888876 4444 122355667789999999999999876 44444455688888 33332 235567899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccc
Q 012448 85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIF 164 (463)
Q Consensus 85 l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~ 164 (463)
|.+-+..+++.++..+++.+.++.-+. . +...+++.|++|.++..+.+++ ....++.+|..++...++-..+-
T Consensus 336 L~kLl~s~~~~l~~~aLrlL~NLSfd~----~-~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 336 LLKLLPSENEDLVNVALRLLFNLSFDP----E-LRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhCcCH----H-HHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHh
Confidence 999999999999999999999975543 4 7788999999999999999876 55678999999998765544444
Q ss_pred cCCCcchhhHhhHhhc-CCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhH
Q 012448 165 PADNKAATDLGNLVAQ-CSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQ 243 (463)
Q Consensus 165 ~~~~~~~~~L~~~~~~-~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~ 243 (463)
..+.++ .+.+.+.. .++.+..-+..+++++|... ..++.+.+.|-|+.++.....+.|.++ +-+++.++..+
T Consensus 409 ~TdcIp--~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~lL----lKlIRNiS~h~ 481 (708)
T PF05804_consen 409 YTDCIP--QLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDPLL----LKLIRNISQHD 481 (708)
T ss_pred hcchHH--HHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccHHH----HHHHHHHHhcC
Confidence 556676 66655554 46667778889999999665 555777777778888887555589774 46999999965
Q ss_pred HHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccc--cccchhcchhh-hhhhHHHHHHHhccccCCChhhhh
Q 012448 244 HSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSK--DDSHMFIDESS-AKTVISAIDGRLGFLQSQDSDECE 320 (463)
Q Consensus 244 ~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f--~~~~~~~~~~~-~k~~p~~l~~~f~~~~~~d~~~~~ 320 (463)
...+-+. .+.+..|++.+...+++.+ .+=+.|.+.-- .+. .|. +.+ ..++.+++...+.--.+. +++.-
T Consensus 482 ~~~k~~f-~~~i~~L~~~v~~~~~ee~----~vE~LGiLaNL~~~~l-d~~-~ll~~~~llp~L~~~L~~g~~~-dDl~L 553 (708)
T PF05804_consen 482 GPLKELF-VDFIGDLAKIVSSGDSEEF----VVECLGILANLTIPDL-DWA-QLLQEYNLLPWLKDLLKPGASE-DDLLL 553 (708)
T ss_pred chHHHHH-HHHHHHHHHHhhcCCcHHH----HHHHHHHHHhcccCCc-CHH-HHHHhCCHHHHHHHHhCCCCCC-hHHHH
Confidence 3333332 2466667777766554333 23334443310 121 110 112 224556666654322233 34555
Q ss_pred HHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchh-hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHH
Q 012448 321 SALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGK-QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYE 399 (463)
Q Consensus 321 ~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~-k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye 399 (463)
-++=.+|.+++..+.+..|.+ .+....++..+....-+.- =+..+.+|-.++..+ + +- ..++.+
T Consensus 554 E~Vi~~gtla~d~~~A~lL~~--sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~--~--------tr---~~ll~~ 618 (708)
T PF05804_consen 554 EVVILLGTLASDPECAPLLAK--SGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHE--E--------TR---EVLLKE 618 (708)
T ss_pred HHHHHHHHHHCCHHHHHHHHh--CChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcCh--H--------HH---HHHHhc
Confidence 566788999999999999987 4566666666655544433 566677777777654 2 11 112211
Q ss_pred HHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcC--chhHH----Hh-hhccchhHhhc
Q 012448 400 VASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVAR--PWCLM----EL-CSKQEIINTVT 455 (463)
Q Consensus 400 ~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~--~Wg~~----~i-~~~~gfie~ll 455 (463)
......++.+. -+=+++|--+=..|.-|+.+ .|+-+ .+ ..+..++|-+-
T Consensus 619 -------~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~ 675 (708)
T PF05804_consen 619 -------TEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMVE 675 (708)
T ss_pred -------cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 23446777787 77899999998999888877 89854 12 23455555553
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.75 E-value=1.2e-06 Score=94.01 Aligned_cols=290 Identities=17% Similarity=0.175 Sum_probs=188.5
Q ss_pred CChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448 39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA 118 (463)
Q Consensus 39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~ 118 (463)
+-.+.++..+.+++ ...+..+-..+..+... ..++.--....++.-|+|+++.+|.+|++.++++.. .. .
T Consensus 42 ~~~~~vi~l~~s~~--~~~Krl~yl~l~~~~~~--~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-----~~-~ 111 (526)
T PF01602_consen 42 FLFMEVIKLISSKD--LELKRLGYLYLSLYLHE--DPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT-----PE-M 111 (526)
T ss_dssp STHHHHHCTCSSSS--HHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S-----HH-H
T ss_pred hHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc-----cc-h
Confidence 55677778887655 44555555577777443 333444478899999999999999999999999752 23 4
Q ss_pred HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448 119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS 198 (463)
Q Consensus 119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~ 198 (463)
++ .+++.|..++.+++..|.+.|+-++.++.+..|.+ ++....+ .+.+.+..+|..|+.-++.++.++ +
T Consensus 112 ~~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~~~~--~l~~lL~d~~~~V~~~a~~~l~~i-~ 180 (526)
T PF01602_consen 112 AE-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDELIP--KLKQLLSDKDPSVVSAALSLLSEI-K 180 (526)
T ss_dssp HH-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGGHHH--HHHHHTTHSSHHHHHHHHHHHHHH-H
T ss_pred hh-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHHHHH--HHhhhccCCcchhHHHHHHHHHHH-c
Confidence 43 36888899999999999999999999998776542 2222455 777788888999999999999999 7
Q ss_pred cCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhh
Q 012448 199 VSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIM 277 (463)
Q Consensus 199 ~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ail 277 (463)
.+++....+ -..+++.+.+.+.. .|..+|.+++.++..++. .+.... +..++..+...+.+ .+|-+.--+
T Consensus 181 ~~~~~~~~~-~~~~~~~L~~~l~~-~~~~~q~~il~~l~~~~~~~~~~~~---~~~~i~~l~~~l~s--~~~~V~~e~-- 251 (526)
T PF01602_consen 181 CNDDSYKSL-IPKLIRILCQLLSD-PDPWLQIKILRLLRRYAPMEPEDAD---KNRIIEPLLNLLQS--SSPSVVYEA-- 251 (526)
T ss_dssp CTHHHHTTH-HHHHHHHHHHHHTC-CSHHHHHHHHHHHTTSTSSSHHHHH---HHHHHHHHHHHHHH--HHHHHHHHH--
T ss_pred cCcchhhhh-HHHHHHHhhhcccc-cchHHHHHHHHHHHhcccCChhhhh---HHHHHHHHHHHhhc--cccHHHHHH--
Confidence 777664321 12456666666677 999999999999999988 333321 15677777777762 222211011
Q ss_pred HhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhh
Q 012448 278 ISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDR 357 (463)
Q Consensus 278 i~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~ 357 (463)
...+ +++...+- ..-.+++.+..++.++|+.++-+|++++.+|+... ...+.. .++...+...
T Consensus 252 -~~~i------~~l~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~~------~~~~~~~l~~ 314 (526)
T PF01602_consen 252 -IRLI------IKLSPSPE--LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVFN------QSLILFFLLY 314 (526)
T ss_dssp -HHHH------HHHSSSHH--HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHGT------HHHHHHHHHC
T ss_pred -HHHH------HHhhcchH--HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhhh------hhhhhheecC
Confidence 1111 11111100 01123333444667999999999999999999865 233321 1122222222
Q ss_pred ccc-hhhHhHHhhhHHHhc
Q 012448 358 QGH-GKQLAALHGLANIAG 375 (463)
Q Consensus 358 ~~~-~~k~r~L~al~~Il~ 375 (463)
-.+ ..|.++++.+..+..
T Consensus 315 ~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 315 DDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp SSSHHHHHHHHHHHHHH--
T ss_pred CCChhHHHHHHHHHhhccc
Confidence 222 228889998888876
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.72 E-value=4.1e-07 Score=97.63 Aligned_cols=262 Identities=15% Similarity=0.154 Sum_probs=180.0
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL 119 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~ 119 (463)
..+.+..-|++.| +..+..+--+|..+ ...++++.+.+.+..+|.|++|.||.-|+-++.++.+.. ..
T Consensus 80 ~~n~l~kdl~~~n--~~~~~lAL~~l~~i----~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~---p~--- 147 (526)
T PF01602_consen 80 IINSLQKDLNSPN--PYIRGLALRTLSNI----RTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD---PD--- 147 (526)
T ss_dssp HHHHHHHHHCSSS--HHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC---HC---
T ss_pred HHHHHHHhhcCCC--HHHHHHHHhhhhhh----cccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC---HH---
Confidence 4455666677665 55554444466665 477889999999999999999999999999999998765 32
Q ss_pred HHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhc
Q 012448 120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSV 199 (463)
Q Consensus 120 ~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~ 199 (463)
.+.+. +++.+...+.|++.+|...|+.++..+ ++++....-+-+.... .|.+.+...++-+++.+..++..++..
T Consensus 148 -~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~--~L~~~l~~~~~~~q~~il~~l~~~~~~ 222 (526)
T PF01602_consen 148 -LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIR--ILCQLLSDPDPWLQIKILRLLRRYAPM 222 (526)
T ss_dssp -CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHH--HHHHHHTCCSHHHHHHHHHHHTTSTSS
T ss_pred -HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHH--HhhhcccccchHHHHHHHHHHHhcccC
Confidence 22333 788889999999999999999999999 5444321111122333 566566889999999999999999999
Q ss_pred CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHh
Q 012448 200 SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMIS 279 (463)
Q Consensus 200 S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~ 279 (463)
+++.... ..+++.+...+.+ .+.-|...|+.++..+...+. .-+.+++.|...+. ..||-+|--++-..
T Consensus 223 ~~~~~~~---~~~i~~l~~~l~s-~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~--s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 223 EPEDADK---NRIIEPLLNLLQS-SSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLS--SSDPNVRYIALDSL 291 (526)
T ss_dssp SHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHT--SSSHHHHHHHHHHH
T ss_pred ChhhhhH---HHHHHHHHHHhhc-cccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhh--cccchhehhHHHHH
Confidence 8887632 3577788888878 888899999999998888666 55667778888887 45553342222222
Q ss_pred hhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHH
Q 012448 280 GRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLL 339 (463)
Q Consensus 280 g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L 339 (463)
..+... ..+... .+... +|-+..+.|.+++..|++.+..++....-+..+
T Consensus 292 ~~l~~~-------~~~~v~-~~~~~--~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il 341 (526)
T PF01602_consen 292 SQLAQS-------NPPAVF-NQSLI--LFFLLYDDDPSIRKKALDLLYKLANESNVKEIL 341 (526)
T ss_dssp HHHCCH-------CHHHHG-THHHH--HHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHhhcc-------cchhhh-hhhhh--hheecCCCChhHHHHHHHHHhhcccccchhhHH
Confidence 222221 011111 21211 222334889999999999999999855444443
No 13
>PRK09687 putative lyase; Provisional
Probab=98.72 E-value=5.8e-07 Score=89.99 Aligned_cols=196 Identities=11% Similarity=0.037 Sum_probs=143.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID 161 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~ 161 (463)
.++|...|.|++..||..++++++.+ . . +.+++.+...+.++|..+...|+.+|..|......
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~---~---~---------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLR---G---G---------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc---C---c---------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 77888999999999999999999874 2 1 24677777888999999999999999999754322
Q ss_pred ccccCCCcchhhHhhH-hhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHH
Q 012448 162 IIFPADNKAATDLGNL-VAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELA 240 (463)
Q Consensus 162 ~l~~~~~~~~~~L~~~-~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa 240 (463)
....++ .|... ....+..||..+...+.++.+....- ...++..+...+.+ +|.-||..++.-|.++.
T Consensus 88 ---~~~a~~--~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D-~~~~VR~~a~~aLg~~~ 156 (280)
T PRK09687 88 ---QDNVFN--ILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFD-KSTNVRFAVAFALSVIN 156 (280)
T ss_pred ---hHHHHH--HHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhC-CCHHHHHHHHHHHhccC
Confidence 123444 56544 45678899999999999886432211 11244556667888 89999999999886543
Q ss_pred hhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhh
Q 012448 241 EIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECE 320 (463)
Q Consensus 241 ~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~ 320 (463)
....++.|+..+.+ .|+.+|..++...|.+.+. . ....|.++ ..+.+.+..++.
T Consensus 157 ----------~~~ai~~L~~~L~d--~~~~VR~~A~~aLg~~~~~--------~--~~~~~~L~----~~L~D~~~~VR~ 210 (280)
T PRK09687 157 ----------DEAAIPLLINLLKD--PNGDVRNWAAFALNSNKYD--------N--PDIREAFV----AMLQDKNEEIRI 210 (280)
T ss_pred ----------CHHHHHHHHHHhcC--CCHHHHHHHHHHHhcCCCC--------C--HHHHHHHH----HHhcCCChHHHH
Confidence 23467788888874 7778998898888887430 0 11233333 355788999999
Q ss_pred HHHHHHHhhcC
Q 012448 321 SALEALGQIGS 331 (463)
Q Consensus 321 ~A~dtlG~Igs 331 (463)
.|+++||.+|.
T Consensus 211 ~A~~aLg~~~~ 221 (280)
T PRK09687 211 EAIIGLALRKD 221 (280)
T ss_pred HHHHHHHccCC
Confidence 99999999987
No 14
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.71 E-value=1.7e-06 Score=86.96 Aligned_cols=406 Identities=14% Similarity=0.093 Sum_probs=276.6
Q ss_pred CCCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHH-HHHHHHHHHhcccccc---chhhch
Q 012448 6 SMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLED-TLVVCLERIFKTKYGA---SLIPHY 81 (463)
Q Consensus 6 ~~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~-~~~~vL~~il~~~~~~---~l~~~~ 81 (463)
-.+|+++-+++-.+|-.+...-...-...+.+....|.++.-+.+.. ++.-+ .++-+|..+-+-.... .+...-
T Consensus 81 ~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q--~~mlqfEAaWalTNiaSGtt~QTkvVvd~~A 158 (526)
T COG5064 81 FSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQ--RDMLQFEAAWALTNIASGTTQQTKVVVDAGA 158 (526)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcc--hhHHHHHHHHHHhhhccCcccceEEEEeCCc
Confidence 35788888888888887755544445667777888888888885433 23222 3333777774322221 234455
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCch--HHHHHHHHHHHHHhCCCC-
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNE--EVATASMDAIKKLAGFPN- 158 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~--~va~~A~~~L~~lak~~~- 158 (463)
.+.+..-|..++..||+-+.|++|.++..+ .. ....+.+.|.+..++..+.+... ++-+.|.=.|+.+++-.+
T Consensus 159 VPlfiqlL~s~~~~V~eQavWALGNiAGDS---~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP 234 (526)
T COG5064 159 VPLFIQLLSSTEDDVREQAVWALGNIAGDS---EG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNP 234 (526)
T ss_pred hHHHHHHHcCchHHHHHHHHHHhccccCCc---hh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCC
Confidence 888899999999999999999999999877 66 88899999999999988877655 888899999999976542
Q ss_pred --CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHH
Q 012448 159 --GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELL 236 (463)
Q Consensus 159 --~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell 236 (463)
.-..+. ..++ .|.+++-..|..+-.-+|=.+..++-.+.|..+++.+.|+-..++..|.+ +|..+|--++-.+
T Consensus 235 ~P~w~~is--qalp--iL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~-~sa~iqtPalR~v 309 (526)
T COG5064 235 PPDWSNIS--QALP--ILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH-ESAKIQTPALRSV 309 (526)
T ss_pred CCchHHHH--HHHH--HHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC-ccccccCHHHHhh
Confidence 111111 2345 67778888999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccc---hhcchhhhhhhHHHHHHHhcccc
Q 012448 237 YELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSH---MFIDESSAKTVISAIDGRLGFLQ 312 (463)
Q Consensus 237 ~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~---~~~~~~~~k~~p~~l~~~f~~~~ 312 (463)
..++. +..--+-+.+.|.+..+-.++.+.+++ +|+.+--..+-|-+ |+.- ++|| ..-.|++++ +++
T Consensus 310 GNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~--irKEaCWTiSNITA-Gnteqiqavid---~nliPpLi~----lls 379 (526)
T COG5064 310 GNIVTGSDDQTQVIINCGALKAFRSLLSSPKEN--IRKEACWTISNITA-GNTEQIQAVID---ANLIPPLIH----LLS 379 (526)
T ss_pred cCeeecCccceehheecccHHHHHHHhcChhhh--hhhhhheeeccccc-CCHHHHHHHHh---cccchHHHH----HHH
Confidence 99888 666678899999999999988776662 24444333333333 2321 2232 233567676 345
Q ss_pred CCChhhhhHHHHHHHhhcCC----HHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhh
Q 012448 313 SQDSDECESALEALGQIGSS----IQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNAD 388 (463)
Q Consensus 313 ~~d~~~~~~A~dtlG~Igss----~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~ 388 (463)
+-|--++--|-|++.+.-+. ++--+.|..+ ... +-+-.+.+-.-+-.---+|+|+.+||..+... .
T Consensus 380 ~ae~k~kKEACWAisNatsgg~~~PD~iryLv~q--G~I-kpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d--~----- 449 (526)
T COG5064 380 SAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQ--GFI-KPLCDLLDVVDNKIIEVALDAIENILKVGEQD--R----- 449 (526)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCchHHHHHHHc--cch-hHHHHHHhccCccchhhhHHHHHHHHhhhhHH--H-----
Confidence 66777888899999876542 2222233321 111 22222333333322223499999999976211 0
Q ss_pred HHHHHHHH-HHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhh
Q 012448 389 AEESLRHL-IYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELC 445 (463)
Q Consensus 389 ~e~~l~~~-~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~ 445 (463)
.- ..... +|+.+-+ +..-|+++.++- .---++..-||.++-.-+.-.=++.+|.
T Consensus 450 ~~-~~~nin~ya~~vE--~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~la 505 (526)
T COG5064 450 LR-YGKNINIYAVYVE--KAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELA 505 (526)
T ss_pred Hh-ccCCccHHHHHHH--hcccHHHHHHhhhccccHHHHHHHHHHHHHcccchhhhhcC
Confidence 00 01111 3333322 123377777776 5578899999999888776666666653
No 15
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=2.3e-06 Score=86.72 Aligned_cols=286 Identities=17% Similarity=0.162 Sum_probs=200.9
Q ss_pred HHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhh-----chHHHHHHhhcCCCHHHHHHHHHHHH
Q 012448 31 AAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIP-----HYMPFVQVGLTADSHSVKRLACKTVT 105 (463)
Q Consensus 31 ~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~-----~~~~~l~~gL~h~~~~Vr~Lal~~l~ 105 (463)
.=..+...--|.++.. |+..-|.+-++...- +|-.+ .|.-+--+ .-.++|+..|+..++.||.-|+.+++
T Consensus 159 nk~kiA~sGaL~pltr-Lakskdirvqrnatg-aLlnm---Ths~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttais 233 (550)
T KOG4224|consen 159 NKVKIARSGALEPLTR-LAKSKDIRVQRNATG-ALLNM---THSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAIS 233 (550)
T ss_pred chhhhhhccchhhhHh-hcccchhhHHHHHHH-HHHHh---hhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhh
Confidence 3345666677777777 443333444443333 33232 23332222 23899999999999999999999999
Q ss_pred HHHhCCchhHHHHHHHhhccC--cHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCc
Q 012448 106 CLLEDSDLEASCALQLLIDYE--IYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSS 183 (463)
Q Consensus 106 ~i~~~~~~~~~~~~~~~~~~~--l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~ 183 (463)
.|.-.. . .-+.+++.+ ++|.+++...+++..|+-.|..+|..++.......-|+.++.++ .+.+++ +++
T Consensus 234 nIaVd~----~-~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP--~lv~Ll--qs~ 304 (550)
T KOG4224|consen 234 NIAVDR----R-ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLP--LLVELL--QSP 304 (550)
T ss_pred hhhhhH----H-HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCch--HHHHHH--hCc
Confidence 986432 2 445777777 99999999999999999999999999999988776788999999 888676 666
Q ss_pred hhHHHHHHH--HHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHH
Q 012448 184 LGRVRVLSL--IVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCS 260 (463)
Q Consensus 184 ~vR~Rv~el--~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~ 260 (463)
+.+.=.-++ +-+|+-| |-..-.+++.|++..++.-|+-++..-.|..|...|+.||. +.|..+-+...|-+.++.+
T Consensus 305 ~~plilasVaCIrnisih-plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~e 383 (550)
T KOG4224|consen 305 MGPLILASVACIRNISIH-PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIE 383 (550)
T ss_pred chhHHHHHHHHHhhcccc-cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHH
Confidence 666544443 3335543 55556788999999999999886666699999999999999 9999999999999999999
Q ss_pred HhcccccchhhhhhhhhHhhhhcccccc-chhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHH
Q 012448 261 LIGNSATETILRSRAIMISGRLLSKDDS-HMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLL 339 (463)
Q Consensus 261 ~i~~~~~dpl~r~~aili~g~i~~f~~~-~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L 339 (463)
.+.+....- +++..-+...+....+. ..|.| ..-.|.++. +..+.....++-|..+|+++++.+++..-+
T Consensus 384 L~lD~pvsv--qseisac~a~Lal~d~~k~~lld---~gi~~iLIp----~t~s~s~Ev~gNaAaAL~Nlss~v~~Yarv 454 (550)
T KOG4224|consen 384 LLLDGPVSV--QSEISACIAQLALNDNDKEALLD---SGIIPILIP----WTGSESEEVRGNAAAALINLSSDVEHYARV 454 (550)
T ss_pred HHhcCChhH--HHHHHHHHHHHHhccccHHHHhh---cCCcceeec----ccCccchhhcccHHHHHHhhhhhhHHHHHH
Confidence 998754322 22211111112211111 11111 111333333 456677889999999999999999986544
Q ss_pred h
Q 012448 340 L 340 (463)
Q Consensus 340 ~ 340 (463)
.
T Consensus 455 i 455 (550)
T KOG4224|consen 455 I 455 (550)
T ss_pred H
Confidence 4
No 16
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.64 E-value=3.2e-06 Score=97.38 Aligned_cols=184 Identities=18% Similarity=0.220 Sum_probs=111.9
Q ss_pred hcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHH
Q 012448 37 DRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS 116 (463)
Q Consensus 37 ~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~ 116 (463)
..-.++.|...|++.+ +..+..++..|.++- .+...+.|+..|.++++.||..++.+++++.+... .
T Consensus 619 ~~~~~~~L~~~L~D~d--~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---~ 685 (897)
T PRK13800 619 DAPSVAELAPYLADPD--PGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---P 685 (897)
T ss_pred cchhHHHHHHHhcCCC--HHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---c
Confidence 5556789999998766 889999999998872 24467889999999999999999999998865331 1
Q ss_pred HHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448 117 CALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL 196 (463)
Q Consensus 117 ~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i 196 (463)
.+.++..|.++|..|...|+.+|..+.... . . .|...+...|..||..+...+.++
T Consensus 686 -----------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~----------~-~--~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 686 -----------APALRDHLGSPDPVVRAAALDVLRALRAGD----------A-A--LFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred -----------hHHHHHHhcCCCHHHHHHHHHHHHhhccCC----------H-H--HHHHHhcCCCHHHHHHHHHHHhcc
Confidence 123445556666667776766666553211 0 1 122245566666666665555544
Q ss_pred HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhh
Q 012448 197 FSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAI 276 (463)
Q Consensus 197 a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ai 276 (463)
... +.++.-+.| +|..||..+++-|..+..... ..++.|..++.+ .||.+|.-++
T Consensus 742 ~~~--------------~~l~~~l~D-~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D--~d~~VR~aA~ 796 (897)
T PRK13800 742 DDV--------------ESVAGAATD-ENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGD--PDPLVRAAAL 796 (897)
T ss_pred cCc--------------HHHHHHhcC-CCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcC--CCHHHHHHHH
Confidence 211 123344666 666666666666666544211 124445554443 3466664444
Q ss_pred hHhhhh
Q 012448 277 MISGRL 282 (463)
Q Consensus 277 li~g~i 282 (463)
...|.+
T Consensus 797 ~aLg~~ 802 (897)
T PRK13800 797 AALAEL 802 (897)
T ss_pred HHHHhc
Confidence 444433
No 17
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.62 E-value=2.3e-05 Score=87.25 Aligned_cols=336 Identities=17% Similarity=0.130 Sum_probs=224.3
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC
Q 012448 78 IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP 157 (463)
Q Consensus 78 ~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~ 157 (463)
-.++...|+.+|++.+..+..+++.-+.++.-..+ -...+...|+++-|+..+..++..+-..|+.+|-+++-.+
T Consensus 288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E-----NK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~ 362 (708)
T PF05804_consen 288 NKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE-----NKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP 362 (708)
T ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----HHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH
Confidence 34568999999999999999999999999876552 2334557799999999999999999999999999999888
Q ss_pred CCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHH
Q 012448 158 NGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLY 237 (463)
Q Consensus 158 ~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~ 237 (463)
..-+.++..++++ .|..++. ++..|.-+..++-+++. .++.-.....++.++.++..+...++.=+++.++-++.
T Consensus 363 ~~R~~mV~~GlIP--kLv~LL~--d~~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~i 437 (708)
T PF05804_consen 363 ELRSQMVSLGLIP--KLVELLK--DPNFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLI 437 (708)
T ss_pred HHHHHHHHCCCcH--HHHHHhC--CCchHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHH
Confidence 7668899999999 9996664 45566667777777774 67778888889999999998666578878999999999
Q ss_pred HHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhh-hccccccchhcchhhhhhhHHHHHHHhccccCCCh
Q 012448 238 ELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGR-LLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDS 316 (463)
Q Consensus 238 eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~-i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~ 316 (463)
.++..+..++.+.+.|+++.|++.... ..||+ +|-.=+ +.-. +.+....+..++..+.+.+...|.
T Consensus 438 NLa~~~rnaqlm~~g~gL~~L~~ra~~-~~D~l-----LlKlIRNiS~h-------~~~~k~~f~~~i~~L~~~v~~~~~ 504 (708)
T PF05804_consen 438 NLALNKRNAQLMCEGNGLQSLMKRALK-TRDPL-----LLKLIRNISQH-------DGPLKELFVDFIGDLAKIVSSGDS 504 (708)
T ss_pred HHhcCHHHHHHHHhcCcHHHHHHHHHh-cccHH-----HHHHHHHHHhc-------CchHHHHHHHHHHHHHHHhhcCCc
Confidence 999999999999999999999988765 45786 221111 1111 111222233444444444444432
Q ss_pred hhhhHHHHHHHhhcC---CHHH-HHHHhhcCchhHHHHHHHHHhhccch--hhHhHHhhhHHHhcCCCchhhhhhhhhHH
Q 012448 317 DECESALEALGQIGS---SIQG-ATLLLLCLPPAARHVIDAAFDRQGHG--KQLAALHGLANIAGKTRSEDKIILNADAE 390 (463)
Q Consensus 317 ~~~~~A~dtlG~Igs---s~eG-k~~L~~~~~~~~~~~l~~~~~~~~~~--~k~r~L~al~~Il~~~r~~~~~il~~~~e 390 (463)
. +..++++|.++- .... ++++.+. .+-..++......... ..+-+.-.++.+..- +
T Consensus 505 e--e~~vE~LGiLaNL~~~~ld~~~ll~~~---~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d---~---------- 566 (708)
T PF05804_consen 505 E--EFVVECLGILANLTIPDLDWAQLLQEY---NLLPWLKDLLKPGASEDDLLLEVVILLGTLASD---P---------- 566 (708)
T ss_pred H--HHHHHHHHHHHhcccCCcCHHHHHHhC---CHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC---H----------
Confidence 2 345555555553 2222 3444331 1222222222211111 122222222222210 0
Q ss_pred HHHHHHHHHHHhhCCCCChhHHHHHHh---cCCHHHHHHHHHHHHHhhcCchhHHHhhhccchhHhhcCCCccCC
Q 012448 391 ESLRHLIYEVASRSSKLTPSGLFLSVL---QQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTDASTEQQ 462 (463)
Q Consensus 391 ~~l~~~~ye~~~~~~~~~p~~~~~~~~---qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~ 462 (463)
+ -..+. . +..-...+.++. |-..|+=+-.+.++..+..|+=.-+.|....+.+.|++|--.+.+
T Consensus 567 ~-~A~lL----~---~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N 633 (708)
T PF05804_consen 567 E-CAPLL----A---KSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKN 633 (708)
T ss_pred H-HHHHH----H---hCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCC
Confidence 0 00011 0 012233344444 558999999999999999999998899998999999988655543
No 18
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.58 E-value=1e-05 Score=93.18 Aligned_cols=267 Identities=15% Similarity=0.129 Sum_probs=166.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID 161 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~ 161 (463)
.+.|...|+++++.||+.|+..|+++. . ++.++.|+..|.|++..|...|+.+|.++....+
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~------~---------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETT------P---------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhc------c---------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence 578889999999999999999999852 1 2467788889999999999999999999864322
Q ss_pred ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 162 IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 162 ~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
..+ .|.+.+.+.|..||..+.+.+..+...+ ...++..|.+ +|..||..++.-|..+..
T Consensus 685 ------~~~--~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D-~d~~VR~~Av~aL~~~~~ 743 (897)
T PRK13800 685 ------PAP--ALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGD-PDHRVRIEAVRALVSVDD 743 (897)
T ss_pred ------chH--HHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcC-CCHHHHHHHHHHHhcccC
Confidence 112 3444666789999999998888875332 2245667889 999999999998887632
Q ss_pred hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhH
Q 012448 242 IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECES 321 (463)
Q Consensus 242 t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~ 321 (463)
. ..|...+. +.||.+|..+....|.+... . ....|.+. .++.++|+.++.+
T Consensus 744 ~-------------~~l~~~l~--D~~~~VR~~aa~aL~~~~~~--------~--~~~~~~L~----~ll~D~d~~VR~a 794 (897)
T PRK13800 744 V-------------ESVAGAAT--DENREVRIAVAKGLATLGAG--------G--APAGDAVR----ALTGDPDPLVRAA 794 (897)
T ss_pred c-------------HHHHHHhc--CCCHHHHHHHHHHHHHhccc--------c--chhHHHHH----HHhcCCCHHHHHH
Confidence 1 22333333 36788885555555544331 0 11123333 3567889999999
Q ss_pred HHHHHHhhcCCHHHH----HHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHH
Q 012448 322 ALEALGQIGSSIQGA----TLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLI 397 (463)
Q Consensus 322 A~dtlG~Igss~eGk----~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ 397 (463)
|+.+||.+|...... .+|... .+..+...-.+...+. .-.++..|...+.- +... +++-.
T Consensus 795 A~~aLg~~g~~~~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~---~~~a~~~L~~~L~D-----------~~~~-VR~~A 858 (897)
T PRK13800 795 ALAALAELGCPPDDVAAATAALRAS-AWQVRQGAARALAGAA---ADVAVPALVEALTD-----------PHLD-VRKAA 858 (897)
T ss_pred HHHHHHhcCCcchhHHHHHHHhcCC-ChHHHHHHHHHHHhcc---ccchHHHHHHHhcC-----------CCHH-HHHHH
Confidence 999999999865432 222222 2333332222222111 11233444444431 1122 33222
Q ss_pred HHHHhhCCCCCh--hHHHHHHh-cCCHHHHHHHHHHHHH
Q 012448 398 YEVASRSSKLTP--SGLFLSVL-QQAAEIRLAGYRMITG 433 (463)
Q Consensus 398 ye~~~~~~~~~p--~~~~~~~~-qpF~elr~A~~~~l~~ 433 (463)
-.+..+. .++| ...+.... -+.+++|.+|-+-|..
T Consensus 859 ~~aL~~~-~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 859 VLALTRW-PGDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHhcc-CCCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 1333332 2233 34555666 8899999988877653
No 19
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.58 E-value=9.4e-07 Score=88.76 Aligned_cols=242 Identities=14% Similarity=0.153 Sum_probs=199.0
Q ss_pred HHhhhhccCCCCCChHHHHH-HHhcCChHHHHHccccCCCCc--chHHHHHHHHHHHhcccccc---chhhchHHHHHHh
Q 012448 15 DSASDFAYHPGVQNDAAAKK-FLDRFPLSVILNTLQTKPDVP--GLEDTLVVCLERIFKTKYGA---SLIPHYMPFVQVG 88 (463)
Q Consensus 15 ~~~~~~a~~p~~~s~~~~~~-~~~~~~l~~L~~~L~~~~~~~--~~~~~~~~vL~~il~~~~~~---~l~~~~~~~l~~g 88 (463)
|+---+.|-.|.-+ .-|+ ++..--|.++++.|.++. + .....++-.|..+---+.|+ ....+..+-|..-
T Consensus 176 QavWALGNiAGDS~--~~RD~vL~~galeplL~ll~ss~--~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KL 251 (526)
T COG5064 176 QAVWALGNIAGDSE--GCRDYVLQCGALEPLLGLLLSSA--IHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKL 251 (526)
T ss_pred HHHHHhccccCCch--hHHHHHHhcCchHHHHHHHHhcc--chHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHH
Confidence 44445667766533 3344 458899999999999765 3 23445555666665444443 3566778999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCC
Q 012448 89 LTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPAD 167 (463)
Q Consensus 89 L~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~ 167 (463)
+..-|+.|-.=|||++.++.+.. .+ ..+.+.|.|+.+-++..|..++..+-..|+.++..|-.-.+.. +++.+.+
T Consensus 252 iys~D~evlvDA~WAiSYlsDg~---~E-~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G 327 (526)
T COG5064 252 IYSRDPEVLVDACWAISYLSDGP---NE-KIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCG 327 (526)
T ss_pred HhhcCHHHHHHHHHHHHHhccCc---HH-HHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecc
Confidence 99999999999999999998766 56 8899999999999999999999999999999999986666644 7899999
Q ss_pred CcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh----hH
Q 012448 168 NKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE----IQ 243 (463)
Q Consensus 168 ~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~----t~ 243 (463)
++. .+..++.++.+-+|--+|=.+.+|-.-..+..+++++++++|.++..|.. -|--.|+-|.=-+..... -|
T Consensus 328 ~L~--a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~-ae~k~kKEACWAisNatsgg~~~P 404 (526)
T COG5064 328 ALK--AFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSS-AEYKIKKEACWAISNATSGGLNRP 404 (526)
T ss_pred cHH--HHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHH-HHHHHHHHHHHHHHhhhccccCCc
Confidence 998 88888999999999999999999999999999999999999999999988 898888887766665544 57
Q ss_pred HHHHHHHhcchHHHHHHHhccccc
Q 012448 244 HSAEFLSRTTLLQLLCSLIGNSAT 267 (463)
Q Consensus 244 ~g~~~L~~~gi~~~L~~~i~~~~~ 267 (463)
+-.+||+.+|.++-|++++....+
T Consensus 405 D~iryLv~qG~IkpLc~~L~~~dN 428 (526)
T COG5064 405 DIIRYLVSQGFIKPLCDLLDVVDN 428 (526)
T ss_pred hHHHHHHHccchhHHHHHHhccCc
Confidence 778999999999999999876544
No 20
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=1.6e-05 Score=90.20 Aligned_cols=358 Identities=15% Similarity=0.159 Sum_probs=203.7
Q ss_pred hHHHHHccccCCCCcchHHHHHHHHHHHhcccccc--chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448 41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA--SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA 118 (463)
Q Consensus 41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~--~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~ 118 (463)
|+-||.|.++.+ +..++.+-.+|..+-...... .....+...+..|+..|+..||..++++++..+.-.+++.. .
T Consensus 120 l~~L~q~~~S~~--~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~-~ 196 (1075)
T KOG2171|consen 120 LQFLFQSTKSPN--PSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKS-E 196 (1075)
T ss_pred HHHHHHHhcCCC--cchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchH-H
Confidence 556789999887 788998888998885544332 12335789999999999999999999999998864432233 3
Q ss_pred HHHhhc--cCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHh--hcCCchhHHHHHHHH
Q 012448 119 LQLLID--YEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLV--AQCSSLGRVRVLSLI 193 (463)
Q Consensus 119 ~~~~~~--~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~--~~~~~~vR~Rv~el~ 193 (463)
++.+.+ +.++..+-.+++++|.-.|+.+.++|-+++...|-+ ...+.. ++. -.|+ +. ..-++.+|.++++++
T Consensus 197 ~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~-~~l~-Ia~n~~l~~~~R~~ALe~i 273 (1075)
T KOG2171|consen 197 VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQ-FSLE-IAKNKELENSIRHLALEFL 273 (1075)
T ss_pred HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHH-HHHH-HhhcccccHHHHHHHHHHH
Confidence 443332 234444446889999999999999999998776522 111110 111 0111 22 245899999999999
Q ss_pred HHHHhcCHHHHHHH--HhhccHHHHHhhcCCCCcH--H-------------HHHhHHHHHHHHHhhHHHHHHHHhcchHH
Q 012448 194 VKLFSVSRSVASVI--FKANLLTLLEEGVSKKNDT--L-------------ETLSILELLYELAEIQHSAEFLSRTTLLQ 256 (463)
Q Consensus 194 v~ia~~S~~~~~~v--~~sgl~~~ll~eL~~~~Dv--L-------------v~lnalell~eLa~t~~g~~~L~~~gi~~ 256 (463)
+..++.-+.....- .-..+++.++..+.+-+|. . -..-|.+.+--+|-.=.|-+.+. =++.
T Consensus 274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p--~~~~ 351 (1075)
T KOG2171|consen 274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP--PLFE 351 (1075)
T ss_pred HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH--HHHH
Confidence 99987622211111 1124677777776552221 0 01112222222222111110000 0222
Q ss_pred HHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHH
Q 012448 257 LLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGA 336 (463)
Q Consensus 257 ~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk 336 (463)
.+..++. ..|+.-|.-++|..|-+.- |-.+. ..+..|..++.+...+.++++..+-+|..++||+.+.- .
T Consensus 352 ~l~~~l~--S~~w~~R~AaL~Als~i~E--Gc~~~----m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl--~ 421 (1075)
T KOG2171|consen 352 ALEAMLQ--STEWKERHAALLALSVIAE--GCSDV----MIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL--Q 421 (1075)
T ss_pred HHHHHhc--CCCHHHHHHHHHHHHHHHc--ccHHH----HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh--c
Confidence 3333333 2555555555565555543 33332 23457888888888899999999999999999998732 1
Q ss_pred HHHhhcCchhHHHHHHHHHhhccchh-hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhH-HHH
Q 012448 337 TLLLLCLPPAARHVIDAAFDRQGHGK-QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSG-LFL 414 (463)
Q Consensus 337 ~~L~~~~~~~~~~~l~~~~~~~~~~~-k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~-~~~ 414 (463)
..++++.+..+-..+-...+...+.+ +..|-.|+-+.+.. +....+ +-... .-++ ++.
T Consensus 422 p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~---------------~~~~~l-~pYLd----~lm~~~l~ 481 (1075)
T KOG2171|consen 422 PEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE---------------CDKSIL-EPYLD----GLMEKKLL 481 (1075)
T ss_pred HHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh---------------CcHHHH-HHHHH----HHHHHHHH
Confidence 22333223333333333333333333 33444444444431 111111 22211 2233 455
Q ss_pred HHh-cCCHHHHHHHHHHHHHhhc
Q 012448 415 SVL-QQAAEIRLAGYRMITGLVA 436 (463)
Q Consensus 415 ~~~-qpF~elr~A~~~~l~~l~~ 436 (463)
-+. ..-|.+|..+..-+..+|.
T Consensus 482 ~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 482 LLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHhcCCchhHHHHHHHHHHHHHH
Confidence 555 5688899888877777664
No 21
>PTZ00429 beta-adaptin; Provisional
Probab=98.47 E-value=0.00013 Score=81.99 Aligned_cols=291 Identities=15% Similarity=0.153 Sum_probs=181.7
Q ss_pred HHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 012448 42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQL 121 (463)
Q Consensus 42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~ 121 (463)
+.++.+.++++ -..|+.+-..|..+ +...++++--....+++-++|+||.||.+|++.++++-. .. ..+.
T Consensus 71 ~dVvk~~~S~d--~elKKLvYLYL~~y--a~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~-----~~-i~e~ 140 (746)
T PTZ00429 71 VDVVKLAPSTD--LELKKLVYLYVLST--ARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV-----SS-VLEY 140 (746)
T ss_pred HHHHHHhCCCC--HHHHHHHHHHHHHH--cccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-----HH-HHHH
Confidence 44446666655 55666666677776 333334443468889999999999999999999999632 22 4432
Q ss_pred hhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCH
Q 012448 122 LIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSR 201 (463)
Q Consensus 122 ~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~ 201 (463)
+++.|..|+.|++.-|.+.|+-++.++-+..|. .+.+.+..+ .|.+++...|..|...+..++.+|...++
T Consensus 141 -----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe--lv~~~~~~~--~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 141 -----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ--LFYQQDFKK--DLVELLNDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred -----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc--cccccchHH--HHHHHhcCCCccHHHHHHHHHHHHHHhCc
Confidence 456677899999999999999999999887663 334556666 88888899999999999999999998888
Q ss_pred HHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhh
Q 012448 202 SVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGR 281 (463)
Q Consensus 202 ~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~ 281 (463)
+.++... +.+..+++.|.+ -|.-.|...+++|.... |..-+ ....++..+...++. .+|-+-.-++-+.-.
T Consensus 212 ~~l~l~~--~~~~~Ll~~L~e-~~EW~Qi~IL~lL~~y~--P~~~~--e~~~il~~l~~~Lq~--~N~AVVl~Aik~il~ 282 (746)
T PTZ00429 212 EKIESSN--EWVNRLVYHLPE-CNEWGQLYILELLAAQR--PSDKE--SAETLLTRVLPRMSH--QNPAVVMGAIKVVAN 282 (746)
T ss_pred hhhHHHH--HHHHHHHHHhhc-CChHHHHHHHHHHHhcC--CCCcH--HHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH
Confidence 7776654 788999999988 88999999999995532 11111 012445555555444 334321011100001
Q ss_pred hccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccch
Q 012448 282 LLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHG 361 (463)
Q Consensus 282 i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~ 361 (463)
+.+..+ -..+.+.+.+--++.+ .+.+.++.++=+++..+-.|.... +..+..-++.++-.....
T Consensus 283 l~~~~~-~~~~~~~~~rl~~pLv-----~L~ss~~eiqyvaLr~I~~i~~~~----------P~lf~~~~~~Ff~~~~Dp 346 (746)
T PTZ00429 283 LASRCS-QELIERCTVRVNTALL-----TLSRRDAETQYIVCKNIHALLVIF----------PNLLRTNLDSFYVRYSDP 346 (746)
T ss_pred hcCcCC-HHHHHHHHHHHHHHHH-----HhhCCCccHHHHHHHHHHHHHHHC----------HHHHHHHHHhhhcccCCc
Confidence 111000 0001010111001112 235677888888888875554411 233333344444444433
Q ss_pred h--hHhHHhhhHHHhcC
Q 012448 362 K--QLAALHGLANIAGK 376 (463)
Q Consensus 362 ~--k~r~L~al~~Il~~ 376 (463)
. |.+.|+-+..+...
T Consensus 347 ~yIK~~KLeIL~~Lane 363 (746)
T PTZ00429 347 PFVKLEKLRLLLKLVTP 363 (746)
T ss_pred HHHHHHHHHHHHHHcCc
Confidence 3 77777777777653
No 22
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=7.8e-05 Score=84.78 Aligned_cols=359 Identities=18% Similarity=0.165 Sum_probs=218.7
Q ss_pred hHHHHHHHhcC-----ChHHHHHccccCCCCcchHHHHHHHHHHHhccccc---cchhhchHHHHHHhh-cCCCHHHHHH
Q 012448 29 DAAAKKFLDRF-----PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG---ASLIPHYMPFVQVGL-TADSHSVKRL 99 (463)
Q Consensus 29 ~~~~~~~~~~~-----~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~---~~l~~~~~~~l~~gL-~h~~~~Vr~L 99 (463)
...|++.+++. -++.|...+++.. ++..+..++-.+||++....+ .+.-++++..|..+. +++.+.||.-
T Consensus 21 r~~Ae~~l~~~~~~~~~l~~L~~i~~~~~-~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k 99 (1075)
T KOG2171|consen 21 RRQAEEALETLAKTEPLLPALAHILATSA-DPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHK 99 (1075)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 44555555422 5778888888765 366666666677888765433 345556666655555 5669999999
Q ss_pred HHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhH--
Q 012448 100 ACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNL-- 177 (463)
Q Consensus 100 al~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~-- 177 (463)
.+..+..++++...+ .=+++++.+++|..+++.+.-..|.-+|+.+...-.+-. .+.+. .+.++
T Consensus 100 ~~dviAeia~~~l~e--------~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~----~~~~~--~l~~lf~ 165 (1075)
T KOG2171|consen 100 LADVIAEIARNDLPE--------KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL----QPHLD--DLLRLFS 165 (1075)
T ss_pred HHHHHHHHHHhcccc--------chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc----chhHH--HHHHHHH
Confidence 999999999877221 235899999999999999999999999998865543211 11122 23323
Q ss_pred --hhcCCchhHHHHHHHHHHHHhcC---HHHHHHHHhhccHHHHHhh----cCCCCcHHHHHhHHHHHHHHHh--hHHHH
Q 012448 178 --VAQCSSLGRVRVLSLIVKLFSVS---RSVASVIFKANLLTLLEEG----VSKKNDTLETLSILELLYELAE--IQHSA 246 (463)
Q Consensus 178 --~~~~~~~vR~Rv~el~v~ia~~S---~~~~~~v~~sgl~~~ll~e----L~~~~DvLv~lnalell~eLa~--t~~g~ 246 (463)
+...++.||.-..-.+...+... .+...... .++|.+++- +++ +|.=.-..+++.|.|+++ .+-..
T Consensus 166 q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~-~d~~~a~~~l~~l~El~e~~pk~l~ 242 (1075)
T KOG2171|consen 166 QTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQD-GDDDAAKSALEALIELLESEPKLLR 242 (1075)
T ss_pred HhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhc-cchHHHHHHHHHHHHHHhhchHHHH
Confidence 33445556655555555555544 33333332 466666554 444 677667889999999999 33344
Q ss_pred HHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccc----cchhcchh-hhhhhHHHHHHHhcc-----------
Q 012448 247 EFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDD----SHMFIDES-SAKTVISAIDGRLGF----------- 310 (463)
Q Consensus 247 ~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~----~~~~~~~~-~~k~~p~~l~~~f~~----------- 310 (463)
.+++ .+++....+..+.+-|+-+|..|+ -+|.++.+ ..+.- ++ ..+-+|..+...-+.
T Consensus 243 ~~l~--~ii~~~l~Ia~n~~l~~~~R~~AL---e~ivs~~e~Ap~~~k~~-~~~~~~lv~~~l~~mte~~~D~ew~~~d~ 316 (1075)
T KOG2171|consen 243 PHLS--QIIQFSLEIAKNKELENSIRHLAL---EFLVSLSEYAPAMCKKL-ALLGHTLVPVLLAMMTEEEDDDEWSNEDD 316 (1075)
T ss_pred HHHH--HHHHHHHHHhhcccccHHHHHHHH---HHHHHHHHhhHHHhhhc-hhhhccHHHHHHHhcCCcccchhhccccc
Confidence 5554 356666677777776666785554 33333211 11110 11 111122222211111
Q ss_pred ccCCC-hhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhH
Q 012448 311 LQSQD-SDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADA 389 (463)
Q Consensus 311 ~~~~d-~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~ 389 (463)
+++.| .+..-.|..++-.++..--||+++- +.+.+ +..+.....=..|.++|-|++.|-+-- .
T Consensus 317 ~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p----~~~~~-l~~~l~S~~w~~R~AaL~Als~i~EGc--~--------- 380 (1075)
T KOG2171|consen 317 LDEDDEETPYRAAEQALDRLALHLGGKQVLP----PLFEA-LEAMLQSTEWKERHAALLALSVIAEGC--S--------- 380 (1075)
T ss_pred cccccccCcHHHHHHHHHHHHhcCChhhehH----HHHHH-HHHHhcCCCHHHHHHHHHHHHHHHccc--H---------
Confidence 11111 2345677777877888888888874 23333 333332222122899999999988632 1
Q ss_pred HHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcC
Q 012448 390 EESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVAR 437 (463)
Q Consensus 390 e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~ 437 (463)
+.+.... .+-+.++++.. -|.|.+|.||+..+-++++.
T Consensus 381 -~~m~~~l---------~~Il~~Vl~~l~DphprVr~AA~naigQ~std 419 (1075)
T KOG2171|consen 381 -DVMIGNL---------PKILPIVLNGLNDPHPRVRYAALNAIGQMSTD 419 (1075)
T ss_pred -HHHHHHH---------HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhh
Confidence 1233333 34577888888 99999999999999998875
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.42 E-value=1.5e-06 Score=73.68 Aligned_cols=117 Identities=17% Similarity=0.108 Sum_probs=106.3
Q ss_pred hhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC-CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcC
Q 012448 122 LIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN-GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVS 200 (463)
Q Consensus 122 ~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S 200 (463)
+++.|+++.++..+.+++..+...|+.+|..+++..+ ..+.+++.++++ .|.+.+...|..+|..++.++.+++...
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~--~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLP--ALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChH--HHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4567899999999999999999999999999999955 446777888988 8888888899999999999999999999
Q ss_pred HHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 201 RSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 201 ~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
+...+.+.+.|+++.++..+.+ +|.-++..++.+|..|++
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDS-SNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999 899999999999998864
No 24
>PTZ00429 beta-adaptin; Provisional
Probab=98.31 E-value=0.00056 Score=77.04 Aligned_cols=254 Identities=11% Similarity=0.052 Sum_probs=166.0
Q ss_pred cCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHH
Q 012448 38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASC 117 (463)
Q Consensus 38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~ 117 (463)
+-...+|-..|++.+ ....++.+.-++..+ ..+.-...+...++.++.+++..+|+++.-.+.+.++.. ..
T Consensus 31 kge~~ELr~~L~s~~-~~~kk~alKkvIa~m----t~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~---pe- 101 (746)
T PTZ00429 31 RGEGAELQNDLNGTD-SYRKKAAVKRIIANM----TMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ---PE- 101 (746)
T ss_pred cchHHHHHHHHHCCC-HHHHHHHHHHHHHHH----HCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC---hH-
Confidence 345677778887765 122233333344444 222222335666777999999999999999998887644 33
Q ss_pred HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448 118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF 197 (463)
Q Consensus 118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia 197 (463)
++-+++ ..+..-+.|++.-+..-|+.+|..|--. . +++ .+.. .+++.+.+.++.||.-+.-++.++.
T Consensus 102 lalLaI-----Ntl~KDl~d~Np~IRaLALRtLs~Ir~~--~---i~e-~l~~--~lkk~L~D~~pYVRKtAalai~Kly 168 (746)
T PTZ00429 102 KALLAV-----NTFLQDTTNSSPVVRALAVRTMMCIRVS--S---VLE-YTLE--PLRRAVADPDPYVRKTAAMGLGKLF 168 (746)
T ss_pred HHHHHH-----HHHHHHcCCCCHHHHHHHHHHHHcCCcH--H---HHH-HHHH--HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 333333 3455678899999999999999876421 1 111 1222 5677888999999999999999999
Q ss_pred hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhh
Q 012448 198 SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAI 276 (463)
Q Consensus 198 ~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ai 276 (463)
..+++. +.+.|+++.+...|.| .|..|..||+-+|.++.+ .+.. +-...+.+.+|++.+.+ .++......+
T Consensus 169 ~~~pel---v~~~~~~~~L~~LL~D-~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e--~~EW~Qi~IL 240 (746)
T PTZ00429 169 HDDMQL---FYQQDFKKDLVELLND-NNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPE--CNEWGQLYIL 240 (746)
T ss_pred hhCccc---ccccchHHHHHHHhcC-CCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhc--CChHHHHHHH
Confidence 999964 5567899999998999 999999999999999988 3433 44456778888888865 3566442222
Q ss_pred hHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448 277 MISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS 331 (463)
Q Consensus 277 li~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs 331 (463)
=+...+.|.. . ...-.+++.+...+++.++...-.|+-++=.+..
T Consensus 241 ~lL~~y~P~~-------~---~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 241 ELLAAQRPSD-------K---ESAETLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred HHHHhcCCCC-------c---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 2222222210 0 1112344444455666666666666666655554
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.30 E-value=5.6e-06 Score=70.10 Aligned_cols=112 Identities=21% Similarity=0.233 Sum_probs=98.0
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC
Q 012448 80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG 159 (463)
Q Consensus 80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~ 159 (463)
...+.+...|.++++.+|+.+++.++.+..+. +. ..+.+.+.++++.++.++.+++..+...|+.+|..|+...+.
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~---~~-~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGN---ND-NIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC---HH-HHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 46788889999999999999999999999886 55 667778889999999999999999999999999999998864
Q ss_pred c-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448 160 I-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF 197 (463)
Q Consensus 160 l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia 197 (463)
. +.+.+.+.++ .|.+.+...+..+|..++.++.+++
T Consensus 83 ~~~~~~~~g~l~--~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVP--KLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChH--HHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3 5667788888 8887888888899999999888876
No 26
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0032 Score=69.35 Aligned_cols=331 Identities=15% Similarity=0.167 Sum_probs=195.9
Q ss_pred ccchhhchHHHHHHhhcCCCHH-HHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhc--CCchHHHHHHHHHH
Q 012448 74 GASLIPHYMPFVQVGLTADSHS-VKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLI--NGNEEVATASMDAI 150 (463)
Q Consensus 74 ~~~l~~~~~~~l~~gL~h~~~~-Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~--d~d~~va~~A~~~L 150 (463)
|...-|.+...++.-...+.+. ||+.+|.++|+|-++. +.+..+.-. +.++..|+.... ++...|.-+|.++|
T Consensus 123 P~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i---~pevl~~~s-N~iLtaIv~gmrk~e~s~~vRLaa~~aL 198 (859)
T KOG1241|consen 123 PQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI---DPEVLEQQS-NDILTAIVQGMRKEETSAAVRLAALNAL 198 (859)
T ss_pred chhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC---CHHHHHHHH-hHHHHHHHhhccccCCchhHHHHHHHHH
Confidence 3344455566666666666665 9999999999998887 331222222 357888887554 55667888899998
Q ss_pred HHHhCCCC-----Ccc-ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCC
Q 012448 151 KKLAGFPN-----GID-IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKN 224 (463)
Q Consensus 151 ~~lak~~~-----~l~-~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~ 224 (463)
-+-..+.. +.+ .++..-+.+ .-..++..+|.-++.|+++|.+.--+..+...+..+|..-+.-+++ +
T Consensus 199 ~nsLef~~~nF~~E~ern~iMqvvcE------atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks-~ 271 (859)
T KOG1241|consen 199 YNSLEFTKANFNNEMERNYIMQVVCE------ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKS-D 271 (859)
T ss_pred HHHHHHHHHhhccHhhhceeeeeeee------cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 76543321 111 112222222 2346788999999999999999999999999999999999999998 9
Q ss_pred cHHHHHhHHHHHHHHHhh-HH----------------HHHHHHh--cchHHHHHHHhcccccchh--hhhhhh-------
Q 012448 225 DTLETLSILELLYELAEI-QH----------------SAEFLSR--TTLLQLLCSLIGNSATETI--LRSRAI------- 276 (463)
Q Consensus 225 DvLv~lnalell~eLa~t-~~----------------g~~~L~~--~gi~~~L~~~i~~~~~dpl--~r~~ai------- 276 (463)
+.=|.+-++|.-..+++- -+ ...|..+ ++++.-|.+.+..-.+|+. +-+|++
T Consensus 272 ~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~ 351 (859)
T KOG1241|consen 272 NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLM 351 (859)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHH
Confidence 889999999988755551 11 1122222 2777888888876443332 234444
Q ss_pred ------------hHhhhhccc---c-------ccchh---cchh---h-hhhhHHHHHHHhccccCCChhhhhHHHHHHH
Q 012448 277 ------------MISGRLLSK---D-------DSHMF---IDES---S-AKTVISAIDGRLGFLQSQDSDECESALEALG 327 (463)
Q Consensus 277 ------------li~g~i~~f---~-------~~~~~---~~~~---~-~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG 327 (463)
++.+|+.-. . .+++| .+.| + -+-.+..+..+.++...+.-..+.+|.||||
T Consensus 352 l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlg 431 (859)
T KOG1241|consen 352 LFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLG 431 (859)
T ss_pred HHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHH
Confidence 223333310 0 01222 1122 1 1112223333333444566678899999999
Q ss_pred hhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCC
Q 012448 328 QIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKL 407 (463)
Q Consensus 328 ~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~ 407 (463)
.|+.+..-+..= ..-....+.........-||+..-.||+.+.= .+-.||+.-.+...
T Consensus 432 rI~d~l~e~~~n----~~~l~~~l~~l~~gL~DePrva~N~CWAf~~L------------------aea~~eA~~s~~qt 489 (859)
T KOG1241|consen 432 RIADFLPEAIIN----QELLQSKLSALLEGLNDEPRVASNVCWAFISL------------------AEAAYEAAVSNGQT 489 (859)
T ss_pred HHHhhchhhccc----HhhhhHHHHHHHHHhhhCchHHHHHHHHHHHH------------------HHHHHHhccCCCCC
Confidence 999855522111 12233444444555555667777777765432 22222322222112
Q ss_pred ChhH--------HHHHHh-c---CCHHHHHHHHHHHHHhhcC
Q 012448 408 TPSG--------LFLSVL-Q---QAAEIRLAGYRMITGLVAR 437 (463)
Q Consensus 408 ~p~~--------~~~~~~-q---pF~elr~A~~~~l~~l~~~ 437 (463)
.|.+ -++... + .-..+|+|||.-|-.|..+
T Consensus 490 ~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~ 531 (859)
T KOG1241|consen 490 DPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKN 531 (859)
T ss_pred CccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc
Confidence 2222 233333 4 3467999999999988776
No 27
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.0014 Score=66.11 Aligned_cols=289 Identities=15% Similarity=0.129 Sum_probs=188.8
Q ss_pred HHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCH----HHHHHHHhhccHHHHHhh
Q 012448 144 TASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSR----SVASVIFKANLLTLLEEG 219 (463)
Q Consensus 144 ~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~----~~~~~v~~sgl~~~ll~e 219 (463)
.--.+.|.++.|...|... -++.-+ .|+..+.+.|+.||.=.|.-+.-|-.-+. .....+++.|+++.++.+
T Consensus 61 tlcVscLERLfkakegahl--apnlmp--dLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildc 136 (524)
T KOG4413|consen 61 TLCVSCLERLFKAKEGAHL--APNLMP--DLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDC 136 (524)
T ss_pred hhHHHHHHHHHhhccchhh--chhhhH--HHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHH
Confidence 3356778899887776653 345556 77777889999999999988877776654 234567799999999999
Q ss_pred cCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcc-ccccchhcchhhhh
Q 012448 220 VSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLS-KDDSHMFIDESSAK 298 (463)
Q Consensus 220 L~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~-f~~~~~~~~~~~~k 298 (463)
+-+ .|.-|-..++|-+..++.++.|..-|......+-+-..=.-.+.+.+.|-|.+-..-.+.+ +....+. |-|
T Consensus 137 Igg-eddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesane----ckk 211 (524)
T KOG4413|consen 137 IGG-EDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANE----CKK 211 (524)
T ss_pred HcC-CcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhH----hhh
Confidence 999 8888899999999999999999999988887776644322344555555333211111111 1112221 222
Q ss_pred hhHHHHHHHhccccC-CChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchh--hHhHHhhhHHHhc
Q 012448 299 TVISAIDGRLGFLQS-QDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGK--QLAALHGLANIAG 375 (463)
Q Consensus 299 ~~p~~l~~~f~~~~~-~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~--k~r~L~al~~Il~ 375 (463)
. -+++.+..-+.. .|.-.+..+++-.-.+..+.+|++.+.+. -+-..+-.+.....++| |.|+|--++.+|+
T Consensus 212 S--GLldlLeaElkGteDtLVianciElvteLaeteHgreflaQe---glIdlicnIIsGadsdPfekfralmgfgkffg 286 (524)
T KOG4413|consen 212 S--GLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQE---GLIDLICNIISGADSDPFEKFRALMGFGKFFG 286 (524)
T ss_pred h--hHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchh---hHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc
Confidence 1 133333333444 67778899999999999999999999863 33333333344444666 9999999999998
Q ss_pred CCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHhcCCHHHHHHHHHHHHHhhcCchhHHHhhh-ccchhHhh
Q 012448 376 KTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAEIRLAGYRMITGLVARPWCLMELCS-KQEIINTV 454 (463)
Q Consensus 376 ~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~qpF~elr~A~~~~l~~l~~~~Wg~~~i~~-~~gfie~l 454 (463)
-+. |++-..|..-.+++ -.. + +.|-++--+.||..-+|..-+-.+.+-.-|...+.. .|.-.|.+
T Consensus 287 kea-----imdvseeaiceali-iai-d-------gsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehl 352 (524)
T KOG4413|consen 287 KEA-----IMDVSEEAICEALI-IAI-D-------GSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHL 352 (524)
T ss_pred chH-----HhhcCHHHHHHHHH-HHH-H-------hhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHH
Confidence 541 22111111111111 110 0 122234477899999999999999999888766664 44477777
Q ss_pred cCCCcc
Q 012448 455 TDASTE 460 (463)
Q Consensus 455 ldr~~E 460 (463)
+-|--+
T Consensus 353 larafd 358 (524)
T KOG4413|consen 353 LARAFD 358 (524)
T ss_pred HHHHhc
Confidence 655433
No 28
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.83 E-value=0.00047 Score=68.21 Aligned_cols=194 Identities=16% Similarity=0.116 Sum_probs=146.3
Q ss_pred chhhchHHHHHHhhc-CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 012448 76 SLIPHYMPFVQVGLT-ADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLA 154 (463)
Q Consensus 76 ~l~~~~~~~l~~gL~-h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~la 154 (463)
.+.++-.+.|...|+ ..+|.+++-++.+++..+..+ . -...+.+.|.++.|...+.+|+.++...|..+|..++
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~----~-nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls 82 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP----F-NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLS 82 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh----h-HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcC
Confidence 345556677888888 468999999999999977655 2 3457788899999999999999999999999999998
Q ss_pred CCCCCccccccCCCcchhhHhhHhh-cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHH
Q 012448 155 GFPNGIDIIFPADNKAATDLGNLVA-QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSIL 233 (463)
Q Consensus 155 k~~~~l~~l~~~~~~~~~~L~~~~~-~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnal 233 (463)
-..+....+ . ..+. .-++..+. ..|+.+..-.+-++.+++ +..+.-..+. +.++.++..|.. .+.-+|..++
T Consensus 83 ~~~en~~~I-k-~~i~-~Vc~~~~s~~lns~~Q~agLrlL~nLt-v~~~~~~~l~--~~i~~ll~LL~~-G~~~~k~~vL 155 (254)
T PF04826_consen 83 VNDENQEQI-K-MYIP-QVCEETVSSPLNSEVQLAGLRLLTNLT-VTNDYHHMLA--NYIPDLLSLLSS-GSEKTKVQVL 155 (254)
T ss_pred CChhhHHHH-H-HHHH-HHHHHHhcCCCCCHHHHHHHHHHHccC-CCcchhhhHH--hhHHHHHHHHHc-CChHHHHHHH
Confidence 877654322 1 1111 12222222 348889988999999996 4455545554 478888988888 9999999999
Q ss_pred HHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhh
Q 012448 234 ELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRL 282 (463)
Q Consensus 234 ell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i 282 (463)
.+|.-|++.+...+.|.+..++..++...+........ .+++.+..-|
T Consensus 156 k~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l-~~~l~~~~ni 203 (254)
T PF04826_consen 156 KVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENL-LRVLTFFENI 203 (254)
T ss_pred HHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHH-HHHHHHHHHH
Confidence 99999999999999999999999999988876533321 1344444444
No 29
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.64 E-value=0.00069 Score=67.03 Aligned_cols=193 Identities=17% Similarity=0.240 Sum_probs=140.0
Q ss_pred HHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc--chhh--chHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 012448 34 KFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA--SLIP--HYMPFVQVGLTADSHSVKRLACKTVTCLLE 109 (463)
Q Consensus 34 ~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~--~l~~--~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~ 109 (463)
.+++...+..|+..|+.+. .|+..+.+...+... +-++. .+.. ...+.+..-|..|++.||+-|++++..+..
T Consensus 7 ~~l~~~~l~~Ll~lL~~t~-dp~i~e~al~al~n~--aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~ 83 (254)
T PF04826_consen 7 NILEAQELQKLLCLLESTE-DPFIQEKALIALGNS--AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV 83 (254)
T ss_pred CCcCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhh--ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC
Confidence 4567777889999999754 388888888888886 33332 3333 348999999999999999999999999876
Q ss_pred CCchhHHHHHHHhhccCcHHHHHHh-hcC-CchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHH
Q 012448 110 DSDLEASCALQLLIDYEIYPLLLDC-LIN-GNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRV 187 (463)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~li~~-l~d-~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~ 187 (463)
+.++- . ..+. .++.++.. +.. -|..+-..++++|..++-....-+.+ .+.++ .+-+++...|..+|.
T Consensus 84 ~~en~-~-~Ik~-----~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l--~~~i~--~ll~LL~~G~~~~k~ 152 (254)
T PF04826_consen 84 NDENQ-E-QIKM-----YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHML--ANYIP--DLLSLLSSGSEKTKV 152 (254)
T ss_pred ChhhH-H-HHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhH--HhhHH--HHHHHHHcCChHHHH
Confidence 65331 2 2222 24444432 222 26677788999999997665443333 23566 666788999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 188 RVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 188 Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
+++-++++++ .+++..........++.++.-++...+-=+-++++.++.-+.+
T Consensus 153 ~vLk~L~nLS-~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 153 QVLKVLVNLS-ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHHHhc-cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 9999999999 4588888888888999999888774345555677777776655
No 30
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.62 E-value=0.00038 Score=66.86 Aligned_cols=153 Identities=17% Similarity=0.108 Sum_probs=102.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID 161 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~ 161 (463)
...+..++......|-..||..+..++.+-...- +... ..++|.++.+++++..-+...|..+|..+.++-+.
T Consensus 55 ~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~----~~~~-~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~-- 127 (228)
T PF12348_consen 55 LDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF----EPYA-DILLPPLLKKLGDSKKFIREAANNALDAIIESCSY-- 127 (228)
T ss_dssp -HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG----HHHH-HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH----HHHH-HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc--
Confidence 3678889999999999999999988887653221 1112 25889999999999999999999999999988641
Q ss_pred ccccCCC-cchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHh----hccHHHHHhhcCCCCcHHHHHhHHHHH
Q 012448 162 IIFPADN-KAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFK----ANLLTLLEEGVSKKNDTLETLSILELL 236 (463)
Q Consensus 162 ~l~~~~~-~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~----sgl~~~ll~eL~~~~DvLv~lnalell 236 (463)
.+.+ .. .+.....++|..+|.++.+++..+...-++....+.. ..+.+.+...+.| .|.-||.+|-+++
T Consensus 128 ---~~~~~~~--~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D-~~~~VR~~Ar~~~ 201 (228)
T PF12348_consen 128 ---SPKILLE--ILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSD-ADPEVREAARECL 201 (228)
T ss_dssp -----HHHHH--HHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTS-S-HHHHHHHHHHH
T ss_pred ---HHHHHHH--HHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCC-CCHHHHHHHHHHH
Confidence 2233 33 5666778999999999999999998776622222222 2477888889999 9999999999999
Q ss_pred HHHHh-hHHHHH
Q 012448 237 YELAE-IQHSAE 247 (463)
Q Consensus 237 ~eLa~-t~~g~~ 247 (463)
..+.+ .+.-++
T Consensus 202 ~~l~~~~~~~a~ 213 (228)
T PF12348_consen 202 WALYSHFPERAE 213 (228)
T ss_dssp HHHHHHH-HHH-
T ss_pred HHHHHHCCHhhc
Confidence 99987 555443
No 31
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.0051 Score=62.42 Aligned_cols=220 Identities=13% Similarity=0.150 Sum_probs=162.4
Q ss_pred ChHHHHHHHhcCChHHHHHccccCCCCcc-hHHHHHHHHHHHhc---------ccccc--ch-----hhchHHHHHHhhc
Q 012448 28 NDAAAKKFLDRFPLSVILNTLQTKPDVPG-LEDTLVVCLERIFK---------TKYGA--SL-----IPHYMPFVQVGLT 90 (463)
Q Consensus 28 s~~~~~~~~~~~~l~~L~~~L~~~~~~~~-~~~~~~~vL~~il~---------~~~~~--~l-----~~~~~~~l~~gL~ 90 (463)
+|-.=..|++.-.+|.+...|+... +. .+..++..++-++- .-|+- .+ +.-+.+.++.|+.
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~g--k~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d 255 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREG--KTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGID 255 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccC--ccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCC
Confidence 4555566778888999998998876 33 45566666666531 11211 01 1112555666665
Q ss_pred CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC-Cc---hHHHHHHHHHHHHHhCCCCCccccccC
Q 012448 91 ADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN-GN---EEVATASMDAIKKLAGFPNGIDIIFPA 166 (463)
Q Consensus 91 h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d-~d---~~va~~A~~~L~~lak~~~~l~~l~~~ 166 (463)
|.+=.-.+.++++++-++ + +++.+.+.|=+..++.|+.| .+ -++++.+.+.|..||.+..-=..|+..
T Consensus 256 ---p~~L~~l~~tl~~lAVr~----E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~ 327 (461)
T KOG4199|consen 256 ---PDSLVSLSTTLKALAVRD----E-ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEK 327 (461)
T ss_pred ---ccHHHHHHHHHHHHHHHH----H-HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHh
Confidence 445555677888887665 4 89999999999999999998 33 347789999999999877554688888
Q ss_pred CCcchhhHhhHhh--cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCC-CcHHHHHhHHHHHHHHHh-h
Q 012448 167 DNKAATDLGNLVA--QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKK-NDTLETLSILELLYELAE-I 242 (463)
Q Consensus 167 ~~~~~~~L~~~~~--~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~-~DvLv~lnalell~eLa~-t 242 (463)
+..+ .+..++. ..|+.|=-.++.++.-|+-.|||.....++.|.=..++.-++-- .---||.|+.-+++.++. +
T Consensus 328 gg~~--~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs 405 (461)
T KOG4199|consen 328 GGLD--KIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS 405 (461)
T ss_pred cChH--HHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh
Confidence 8888 7774444 44777888999999999999999999999999999999998762 356789999999999998 7
Q ss_pred HHHHHHHHhcchHHHHH
Q 012448 243 QHSAEFLSRTTLLQLLC 259 (463)
Q Consensus 243 ~~g~~~L~~~gi~~~L~ 259 (463)
.+...-+...|+-+.|.
T Consensus 406 ~~~~~~~l~~GiE~Li~ 422 (461)
T KOG4199|consen 406 AENRTILLANGIEKLIR 422 (461)
T ss_pred hhccchHHhccHHHHHH
Confidence 66666666666555443
No 32
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.48 E-value=0.0089 Score=62.36 Aligned_cols=237 Identities=16% Similarity=0.175 Sum_probs=166.5
Q ss_pred chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchH--HHHHHHHHHHHH
Q 012448 76 SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEE--VATASMDAIKKL 153 (463)
Q Consensus 76 ~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~--va~~A~~~L~~l 153 (463)
.....+.+.++..+-+++..||..+.+.+.+++.+. . ..+.+.+.++-.+|+.|+.-+... =..+|.+.+.++
T Consensus 21 ~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~----~-~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~ 95 (371)
T PF14664_consen 21 LVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE----E-SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAF 95 (371)
T ss_pred hhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH----H-HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHH
Confidence 344556777887777777999999999999988765 3 677788888888889888776543 234899999999
Q ss_pred hCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHH
Q 012448 154 AGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSIL 233 (463)
Q Consensus 154 ak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnal 233 (463)
.....|.+. ++.++.. .+...+.+.+|..|.=..|.+++++-..|++. ..+|-+..+++-+-+ .-.=+.-.++
T Consensus 96 l~~~~~~~~-~~~~vvr--alvaiae~~~D~lr~~cletL~El~l~~P~lv---~~~gG~~~L~~~l~d-~~~~~~~~l~ 168 (371)
T PF14664_consen 96 LEIKKGPKE-IPRGVVR--ALVAIAEHEDDRLRRICLETLCELALLNPELV---AECGGIRVLLRALID-GSFSISESLL 168 (371)
T ss_pred HHhcCCccc-CCHHHHH--HHHHHHhCCchHHHHHHHHHHHHHHhhCHHHH---HHcCCHHHHHHHHHh-ccHhHHHHHH
Confidence 888777653 3555554 66668889999999999999999999999764 455778887777765 2111566778
Q ss_pred HHHHHHHhhHHHHHHHHhcchHHHHHHHhccc-----ccch---hhhhhhhhHhhhhccccccchhcchhhhhhhHHHHH
Q 012448 234 ELLYELAEIQHSAEFLSRTTLLQLLCSLIGNS-----ATET---ILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAID 305 (463)
Q Consensus 234 ell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~-----~~dp---l~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~ 305 (463)
..+-.+-.+|.-.+|+-..--++.+..-..+. +.+. ..+.-+..++..+..+.|++.|-...+ ++.-..++
T Consensus 169 ~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~ 247 (371)
T PF14664_consen 169 DTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVD 247 (371)
T ss_pred HHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc-hHHHHHHH
Confidence 88888889999999999877777777666655 2222 223344566777778878764421101 22223333
Q ss_pred HHhccccCCChhhhhHHHHHHHhh
Q 012448 306 GRLGFLQSQDSDECESALEALGQI 329 (463)
Q Consensus 306 ~~f~~~~~~d~~~~~~A~dtlG~I 329 (463)
.+.-+.+.++...+|.+-.+
T Consensus 248 ----~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 248 ----SLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred ----HHcCCCHHHHHHHHHHHHHH
Confidence 44556666777777776544
No 33
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.014 Score=64.84 Aligned_cols=179 Identities=13% Similarity=0.130 Sum_probs=106.0
Q ss_pred ccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHH------
Q 012448 70 KTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVA------ 143 (463)
Q Consensus 70 ~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va------ 143 (463)
+...++++++.+.+.+++-|+|++|-||.=|+-...|++++. .. +++.++.+. ...|.|.+.+|=
T Consensus 132 g~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~---P~-l~e~f~~~~-----~~lL~ek~hGVL~~~l~l 202 (866)
T KOG1062|consen 132 GNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV---PD-LVEHFVIAF-----RKLLCEKHHGVLIAGLHL 202 (866)
T ss_pred hccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC---ch-HHHHhhHHH-----HHHHhhcCCceeeeHHHH
Confidence 344788999999999999999999999999999999999887 55 666554321 122223333322
Q ss_pred -------------------HHHHHHHHHHh--CCCCCc--cccccCCCcc--hhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448 144 -------------------TASMDAIKKLA--GFPNGI--DIIFPADNKA--ATDLGNLVAQCSSLGRVRVLSLIVKLFS 198 (463)
Q Consensus 144 -------------------~~A~~~L~~la--k~~~~l--~~l~~~~~~~--~~~L~~~~~~~~~~vR~Rv~el~v~ia~ 198 (463)
..=+.+|+.+. +.+|+- .-|-||-++- -+.|+ ++.+.|....=--++++.++|.
T Consensus 203 ~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLr-iLGq~d~daSd~M~DiLaqvat 281 (866)
T KOG1062|consen 203 ITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLR-ILGQNDADASDLMNDILAQVAT 281 (866)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHH-HhcCCCccHHHHHHHHHHHHHh
Confidence 23334444442 223332 2233332221 01222 4556666555556677777776
Q ss_pred cCHHH--------HHHHH-------hh-------ccH----------------------------------HHHHhhcCC
Q 012448 199 VSRSV--------ASVIF-------KA-------NLL----------------------------------TLLEEGVSK 222 (463)
Q Consensus 199 ~S~~~--------~~~v~-------~s-------gl~----------------------------------~~ll~eL~~ 222 (463)
..+.. .|.|. ++ +++ .-++.||+|
T Consensus 282 ntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~D 361 (866)
T KOG1062|consen 282 NTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKD 361 (866)
T ss_pred cccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcC
Confidence 42111 11000 00 111 246789999
Q ss_pred CCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhccc
Q 012448 223 KNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNS 265 (463)
Q Consensus 223 ~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~ 265 (463)
.|+-.|.-++|+++-|...+.- ..+++.|.+++..+
T Consensus 362 -pD~SIkrralELs~~lvn~~Nv------~~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 362 -PDVSIKRRALELSYALVNESNV------RVMVKELLEFLESS 397 (866)
T ss_pred -CcHHHHHHHHHHHHHHhccccH------HHHHHHHHHHHHhc
Confidence 9999999999999998874321 24556666666665
No 34
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0098 Score=60.74 Aligned_cols=171 Identities=16% Similarity=0.142 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhccccccc-hh-hchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhh
Q 012448 58 EDTLVVCLERIFKTKYGAS-LI-PHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCL 135 (463)
Q Consensus 58 ~~~~~~vL~~il~~~~~~~-l~-~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l 135 (463)
++-+=+-|+-+....+.+- +. -.....+...|+|+++.||++|+|-||.++.|+ +. +.+.+...+.++-++.-+
T Consensus 100 ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNN---P~-~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 100 KEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNN---PK-SQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcC---HH-HHHHHHHcccHHHHHHHH
Confidence 3333334444444444442 21 123666666999999999999999999999999 77 778888888888887544
Q ss_pred -cCCchHHHHHHHHHHHHHhCCCC-CccccccCCCcchhhHhhHhhc--CCchhHHHHHHHHHHHHhcCHHHHHHHHhhc
Q 012448 136 -INGNEEVATASMDAIKKLAGFPN-GIDIIFPADNKAATDLGNLVAQ--CSSLGRVRVLSLIVKLFSVSRSVASVIFKAN 211 (463)
Q Consensus 136 -~d~d~~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L~~~~~~--~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sg 211 (463)
.+....+.++|.-+++.+-++.+ |....+..+... -|++.+.+ .+-..|+++..++..+......--+.. .+-
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~--~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~-~~~ 252 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQ--VLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA-SSL 252 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHH--HHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH-HHh
Confidence 56677788999999999977776 887788888877 88877777 566777888999988887766555533 334
Q ss_pred cHHHHHhhcCCCCcHHHHHhHHHH
Q 012448 212 LLTLLEEGVSKKNDTLETLSILEL 235 (463)
Q Consensus 212 l~~~ll~eL~~~~DvLv~lnalel 235 (463)
.|+..+..+....|-=++-+++.-
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~ 276 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTA 276 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHH
Confidence 444444444333555555555543
No 35
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.29 E-value=0.14 Score=53.81 Aligned_cols=383 Identities=18% Similarity=0.124 Sum_probs=213.2
Q ss_pred HHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHh-hcCCCHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 012448 42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVG-LTADSHSVKRLACKTVTCLLEDSDLEASCALQ 120 (463)
Q Consensus 42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~g-L~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~ 120 (463)
...+.-|+.+. +....+...-|+...+++ ++.....-.+.++.| ....+..|+....+.+..+..+.-.-.. ...
T Consensus 6 sD~lkKLKiTa-Vd~teds~~~C~~~~~qa--~a~~nt~t~ek~~~~~i~~~~~tv~~~qssC~A~~sk~ev~r~~-F~~ 81 (604)
T KOG4500|consen 6 SDTLKKLKITA-VDKTEDSLEGCLDCLLQA--LAQNNTETSEKIQASGIMTASDTVYLFQSSCLADRSKNEVERSL-FRN 81 (604)
T ss_pred HHHHHHhhccc-cCcccchhHHHHHHHHHh--HhhhChhhHHHHHhcceeeccchhhhhhHHHHHHHhhhHHHHHH-HHH
Confidence 34445555543 222233334466666443 332222234444544 4455778888777666666543311112 444
Q ss_pred HhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCC----cchhhHhhHhhcCCc----hhHHHHHH
Q 012448 121 LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADN----KAATDLGNLVAQCSS----LGRVRVLS 191 (463)
Q Consensus 121 ~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~----~~~~~L~~~~~~~~~----~vR~Rv~e 191 (463)
.+++++++..+.+....||++|-..--.+|.+++-.+.+- ..+|..+. ++ .|++. -..+. ..---.+.
T Consensus 82 ~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid--~L~~~-cs~d~~ane~~~~v~~g 158 (604)
T KOG4500|consen 82 YCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVID--VLKPY-CSKDNPANEEYSAVAFG 158 (604)
T ss_pred HhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHh--hhccc-cccCCccHHHHHHHHHH
Confidence 6788999999999999999999999999999999887644 56666555 33 44422 11221 22222344
Q ss_pred HHHHHHhcCHHHHHHHHhhccHHHHHhhcCC-------CCcHHH-HHhH-------------------------------
Q 012448 192 LIVKLFSVSRSVASVIFKANLLTLLEEGVSK-------KNDTLE-TLSI------------------------------- 232 (463)
Q Consensus 192 l~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~-------~~DvLv-~lna------------------------------- 232 (463)
++.+-.--|++...-+.+.|+++.+..-+.= +.|.|+ -.|-
T Consensus 159 ~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~ 238 (604)
T KOG4500|consen 159 VLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVRE 238 (604)
T ss_pred HHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhcc
Confidence 5556666666666667777777644332210 012221 1233
Q ss_pred ------HHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccc---hhcchh--hhhhhH
Q 012448 233 ------LELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSH---MFIDES--SAKTVI 301 (463)
Q Consensus 233 ------lell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~---~~~~~~--~~k~~p 301 (463)
+|++...|++..---.+++.|.+.-+++++.+.+.+.- .+-. ...++--.+.. -..|++ ..-.-|
T Consensus 239 d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~-k~d~---~~l~k~~~el~vllltGDeSMq~L~~~p 314 (604)
T KOG4500|consen 239 DIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTK-KTDM---LNLFKRIAELDVLLLTGDESMQKLHADP 314 (604)
T ss_pred chhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccc-hHHH---HHHHHhhhhHhhhhhcCchHHHHHhcCc
Confidence 33333333333333345566777777777766332211 0000 00111000110 012232 122367
Q ss_pred HHHHHHhccccCCChhhhhHHHHHHHhhcCCHHH-HHHHhhcCchhHHHHHHHHHhhc-c--chh-hHhHHhhhHHHhcC
Q 012448 302 SAIDGRLGFLQSQDSDECESALEALGQIGSSIQG-ATLLLLCLPPAARHVIDAAFDRQ-G--HGK-QLAALHGLANIAGK 376 (463)
Q Consensus 302 ~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eG-k~~L~~~~~~~~~~~l~~~~~~~-~--~~~-k~r~L~al~~Il~~ 376 (463)
++++.+.+-+.|+|...+-++.=++|+++++... .++++++ .+...+....+.- - +.. +.+|+.||-++.-.
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~---~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP 391 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKD---FLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP 391 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHH---HHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence 7888888888999999999999999999998776 5666654 6666666655522 2 222 78899999887753
Q ss_pred CCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhhhccchhHhhc
Q 012448 377 TRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVT 455 (463)
Q Consensus 377 ~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~~gfie~ll 455 (463)
.......+.-.=+|. +. ..+.+. -||.=.....+|++. -.|+....++..+|..+|-|.
T Consensus 392 v~nka~~~~aGvtea-IL-----------------~~lk~~~ppv~fkllgTlrM~~--d~qe~~a~eL~kn~~l~ekLv 451 (604)
T KOG4500|consen 392 VSNKAHFAPAGVTEA-IL-----------------LQLKLASPPVTFKLLGTLRMIR--DSQEYIACELAKNPELFEKLV 451 (604)
T ss_pred CCchhhccccchHHH-HH-----------------HHHHhcCCcchHHHHHHHHHHH--hchHHHHHHHhcCHHHHHHHH
Confidence 211100100000111 11 122233 347777777777764 467778888999999999888
Q ss_pred CCC
Q 012448 456 DAS 458 (463)
Q Consensus 456 dr~ 458 (463)
|=+
T Consensus 452 ~Ws 454 (604)
T KOG4500|consen 452 DWS 454 (604)
T ss_pred Hhh
Confidence 754
No 36
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.015 Score=64.97 Aligned_cols=256 Identities=11% Similarity=0.080 Sum_probs=195.6
Q ss_pred ChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc--hhh--chHHH
Q 012448 9 DSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS--LIP--HYMPF 84 (463)
Q Consensus 9 ~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~--l~~--~~~~~ 84 (463)
|+.+=+++.+++-------+|+.+--|--+--.|.|+..|+.++ +.++..++|-+|..+++..+... +.. .+.-+
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~-n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl 259 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEH-NFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVL 259 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHhhccchhheeecccchHHH
Confidence 77777778777654433336666555555555788899999875 47889999999999999886642 222 35777
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC--Cccc
Q 012448 85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN--GIDI 162 (463)
Q Consensus 85 l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~--~l~~ 162 (463)
+++-++=..-.|-|-++.++-+|.+.. .. .+.++|.+..++.-+----+.+-+.|+.+-.++++.-+ ..+.
T Consensus 260 ~~kL~~IeyiDvAEQ~LqALE~iSR~H---~~----AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~ 332 (1051)
T KOG0168|consen 260 LEKLLTIEYIDVAEQSLQALEKISRRH---PK----AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHF 332 (1051)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHhhc---cH----HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchH
Confidence 888888889999999999999998644 22 45577888888888877788889999999999987653 3333
Q ss_pred cccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH---HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHH---HHhHHHHH
Q 012448 163 IFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL---FSVSRSVASVIFKANLLTLLEEGVSKKNDTLE---TLSILELL 236 (463)
Q Consensus 163 l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i---a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv---~lnalell 236 (463)
+. +.++ .|.+++...+.+.---+|-++..| +.|.++.++-+..-|+++.+...|.-++=+|- .--++-||
T Consensus 333 v~--ealP--lL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrml 408 (1051)
T KOG0168|consen 333 VM--EALP--LLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRML 408 (1051)
T ss_pred HH--HHHH--HHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHH
Confidence 33 4677 899999999999888888888777 47899999999999999999888876333332 23456788
Q ss_pred HHHHh-hHHHHHHHHhcchHHHHHHHhcccc-------cchhhhhhhh
Q 012448 237 YELAE-IQHSAEFLSRTTLLQLLCSLIGNSA-------TETILRSRAI 276 (463)
Q Consensus 237 ~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~-------~dpl~r~~ai 276 (463)
.-++. ++-++.-|.+.+|.+-|-.++.+.. .+++.|+|.=
T Consensus 409 s~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pne 456 (1051)
T KOG0168|consen 409 SLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNE 456 (1051)
T ss_pred HHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHH
Confidence 88888 7999999999999999999987643 4566666654
No 37
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.011 Score=65.86 Aligned_cols=214 Identities=19% Similarity=0.222 Sum_probs=154.6
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHH-hccccc--cchhhchHHHHHHhhcCC-CHHHHHHHHHHHHHHHhCCchhH
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERI-FKTKYG--ASLIPHYMPFVQVGLTAD-SHSVKRLACKTVTCLLEDSDLEA 115 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~i-l~~~~~--~~l~~~~~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~~~~~ 115 (463)
...+|+..|+...|...+.+.+...-+-+ |.+-.. ..-...+.+.|+.-|+|. +..+--+||+++.++.+-- +
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl---P 244 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVL---P 244 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc---c
Confidence 67788888987765555666555533332 222222 234556789999999987 8999999999999998866 5
Q ss_pred HHHHHHhhccCcHHHHHHhhcC-CchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHH
Q 012448 116 SCALQLLIDYEIYPLLLDCLIN-GNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIV 194 (463)
Q Consensus 116 ~~~~~~~~~~~l~~~li~~l~d-~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v 194 (463)
. ....+|+++.+|.++..|.. +=+-||..+..+|++|++-.+ .++..++.+. ..|. .+.--+-.+.+-++.+++
T Consensus 245 ~-S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~-a~Ls-ylDFFSi~aQR~Alaiaa 319 (1051)
T KOG0168|consen 245 R-SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALS-AVLS-YLDFFSIHAQRVALAIAA 319 (1051)
T ss_pred c-hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHH-HHHH-HHHHHHHHHHHHHHHHHH
Confidence 5 77899999999999865544 346799999999999998775 4566667765 1222 333345567888899999
Q ss_pred HHHh-cCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh----hHHHHHHHHhcchHHHHHHHhcc
Q 012448 195 KLFS-VSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE----IQHSAEFLSRTTLLQLLCSLIGN 264 (463)
Q Consensus 195 ~ia~-~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~----t~~g~~~L~~~gi~~~L~~~i~~ 264 (463)
++++ .++|.+..++ +.+|.|-.-|.. .|--+-.++.-++..++. .++-.+-|.+.|++..+..++.-
T Consensus 320 N~Cksi~sd~f~~v~--ealPlL~~lLs~-~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsv 391 (1051)
T KOG0168|consen 320 NCCKSIRSDEFHFVM--EALPLLTPLLSY-QDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSV 391 (1051)
T ss_pred HHHhcCCCccchHHH--HHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhc
Confidence 9986 4788888888 478888888888 666666666667777766 44455666777888888777764
No 38
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.04 E-value=0.0067 Score=56.55 Aligned_cols=132 Identities=17% Similarity=0.294 Sum_probs=89.4
Q ss_pred cchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHh
Q 012448 55 PGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDC 134 (463)
Q Consensus 55 ~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~ 134 (463)
|..+..+.-++.-+. ..+ +.+...+.+.+..+|.+++|.||.-|+..+.+++.++ -. -+...++..++.|
T Consensus 2 ~~vR~n~i~~l~DL~-~r~-~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~i-----k~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLC-IRY-PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED---MI-----KVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHH-HhC-cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---ce-----eehhhhhHHHHHH
Confidence 345555666665441 223 3566679999999999999999999999999998765 11 1122455778889
Q ss_pred hcCCchHHHHHHHHHHHHHhCC-CC-CccccccCCCcchhhHhhHhh-----cCCchhHHHHHHHHHHHHhc
Q 012448 135 LINGNEEVATASMDAIKKLAGF-PN-GIDIIFPADNKAATDLGNLVA-----QCSSLGRVRVLSLIVKLFSV 199 (463)
Q Consensus 135 l~d~d~~va~~A~~~L~~lak~-~~-~l~~l~~~~~~~~~~L~~~~~-----~~~~~vR~Rv~el~v~ia~~ 199 (463)
+.|++..|+..|...+.++++. .+ -+...|.. .+. .|..... ..+..-|.++|..+.+--+.
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e-~i~--~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPNIIYNNFPE-LIS--SLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHH-HHH--HHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 9999999999999999999887 22 22222211 111 2221101 24666788999988877765
No 39
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.02 E-value=0.33 Score=51.59 Aligned_cols=326 Identities=14% Similarity=0.112 Sum_probs=196.0
Q ss_pred HHHHhhhhccCCCCCChHHHHHHHhc-----CChHHHHHccccCCCCcchHHHHHHHHHHHhccc---cccchhhchHHH
Q 012448 13 LLDSASDFAYHPGVQNDAAAKKFLDR-----FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTK---YGASLIPHYMPF 84 (463)
Q Consensus 13 ~~~~~~~~a~~p~~~s~~~~~~~~~~-----~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~---~~~~l~~~~~~~ 84 (463)
++....|+-+. .+..++-|.+. .+..+++..|+.++ .+....++.+|..++... .+....+.+.+.
T Consensus 74 vL~Li~dll~~----~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d--~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~ 147 (429)
T cd00256 74 VLTLIDDMLQE----DDTRVKLFHDDALLKKKTWEPFFNLLNRQD--QFIVHMSFSILAKLACFGLAKMEGSDLDYYFNW 147 (429)
T ss_pred HHHHHHHHHHh----chHHHHHHHHHhhccccchHHHHHHHcCCc--hhHHHHHHHHHHHHHhcCccccchhHHHHHHHH
Confidence 34445555555 55666666654 68888999888654 788899999999997532 122334445667
Q ss_pred HHHhhcCC-CHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC--CchHHHHHHHHHHHHHhCCCCCcc
Q 012448 85 VQVGLTAD-SHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN--GNEEVATASMDAIKKLAGFPNGID 161 (463)
Q Consensus 85 l~~gL~h~-~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d--~d~~va~~A~~~L~~lak~~~~l~ 161 (463)
+..-|+.+ +...+..++..++.+++.. . ....+.+++.++.++..|.. ...++--.++=++.-++=++++.+
T Consensus 148 l~~~l~~~~~~~~~~~~v~~L~~LL~~~----~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~ 222 (429)
T cd00256 148 LKEQLNNITNNDYVQTAARCLQMLLRVD----E-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE 222 (429)
T ss_pred HHHHhhccCCcchHHHHHHHHHHHhCCc----h-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH
Confidence 77777755 4777788888899988876 3 55677777888999988864 245777888888888877777667
Q ss_pred ccccCCCcchhhHhhHhh-cCCchhHHHHHHHHHHHHhcC------HHHHHHHHhhccHHHHHhh----cCCCCcHHHHH
Q 012448 162 IIFPADNKAATDLGNLVA-QCSSLGRVRVLSLIVKLFSVS------RSVASVIFKANLLTLLEEG----VSKKNDTLETL 230 (463)
Q Consensus 162 ~l~~~~~~~~~~L~~~~~-~~~~~vR~Rv~el~v~ia~~S------~~~~~~v~~sgl~~~ll~e----L~~~~DvLv~l 230 (463)
.....+.++ .|.+.+. ...++|=+=++.++.++...+ ......+++.|+.+.+-.- ..| +|+.--+
T Consensus 223 ~~~~~~~i~--~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~D-edL~edl 299 (429)
T cd00256 223 VLKRLSLIQ--DLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDD-EDLTDDL 299 (429)
T ss_pred hhccccHHH--HHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCc-HHHHHHH
Confidence 666667777 6664443 335666666777888888854 3455677777887643222 333 4433222
Q ss_pred hHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccc--cchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHh
Q 012448 231 SILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSA--TETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRL 308 (463)
Q Consensus 231 nalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~--~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f 308 (463)
+.+ ....-+++.+-.-++.=..-+..-. =.|.=+ --.|-. .|+.+|-+ ++| ..+..+.
T Consensus 300 ~~L--------~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~-----se~FW~--EN~~kf~~----~~~-~llk~L~ 359 (429)
T cd00256 300 KFL--------TEELKNSVQDLSSFDEYKSELRSGRLHWSPVHK-----SEKFWR--ENADRLNE----KNY-ELLKILI 359 (429)
T ss_pred HHH--------HHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCC-----CchHHH--HHHHHHHh----cch-HHHHHHH
Confidence 221 2222233333344444333332111 011000 001111 13334322 222 3344444
Q ss_pred ccc-cCCChhhhhHHHHHHHhhcC-CHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhc
Q 012448 309 GFL-QSQDSDECESALEALGQIGS-SIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAG 375 (463)
Q Consensus 309 ~~~-~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~ 375 (463)
+.+ .++|+..+++|.-=+|++.+ -++|+..+.+- | .=..+|+.+.+. -..-|-.||.|+..|+.
T Consensus 360 ~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~l-g-~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 360 HLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQL-G-GKQRVMRLLNHE-DPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHc-C-cHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 455 57899999999999999998 78899999874 3 223355544432 11227777777776653
No 40
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.28 Score=53.43 Aligned_cols=272 Identities=13% Similarity=0.123 Sum_probs=164.3
Q ss_pred HHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHH------
Q 012448 43 VILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS------ 116 (463)
Q Consensus 43 ~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~------ 116 (463)
.+++.|++-. +.+...+..||............ ..+.+.+.+.++.++-.=|.-+.+.+...+.+.....-
T Consensus 100 ~~~~~~~tps--~~~q~~~~~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l 176 (569)
T KOG1242|consen 100 ILLEELDTPS--KSVQRAVSTCLPPLVVLSKGLSG-EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFL 176 (569)
T ss_pred HHHHhcCCCc--HHHHHHHHHHhhhHHHHhhccCH-HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHH
Confidence 4455555433 34444555566655433322222 12456666666666666666666666555544320000
Q ss_pred -HHHH--------------------------Hhhcc---CcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC--Cccccc
Q 012448 117 -CALQ--------------------------LLIDY---EIYPLLLDCLINGNEEVATASMDAIKKLAGFPN--GIDIIF 164 (463)
Q Consensus 117 -~~~~--------------------------~~~~~---~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~--~l~~l~ 164 (463)
++.. ....+ .++|.++.|.+|....|...|..+.+.+-.+.+ |.+.+.
T Consensus 177 ~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~ll 256 (569)
T KOG1242|consen 177 DNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLL 256 (569)
T ss_pred HHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhh
Confidence 0000 00111 578889999999999999999999999966654 445555
Q ss_pred cCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHH
Q 012448 165 PADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQH 244 (463)
Q Consensus 165 ~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~ 244 (463)
++.+. .+... +=.-|.-+.+++--++.+.+..++.|. ..++|.+..-|.| .++-+|..+.+++..+++.-.
T Consensus 257 psll~---~l~~~----kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~D-T~~evr~a~~~~l~~~~svid 327 (569)
T KOG1242|consen 257 PSLLG---SLLEA----KWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWD-TKPEVRKAGIETLLKFGSVID 327 (569)
T ss_pred hhhHH---HHHHH----hhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHcc-CCHHHHHHHHHHHHHHHHhhc
Confidence 43332 22211 223466778888888999999999986 5899999999999 999999999999999998543
Q ss_pred HHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchh-hhhhhHHHHHHHhccccCCChhhhhHHH
Q 012448 245 SAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDES-SAKTVISAIDGRLGFLQSQDSDECESAL 323 (463)
Q Consensus 245 g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~-~~k~~p~~l~~~f~~~~~~d~~~~~~A~ 323 (463)
... +++++..+.+.-.||--+++. .+-.+....++++++.| +..=.|.... -+.+.+..++-.++
T Consensus 328 N~d-------I~~~ip~Lld~l~dp~~~~~e---~~~~L~~ttFV~~V~~psLalmvpiL~R----~l~eRst~~kr~t~ 393 (569)
T KOG1242|consen 328 NPD-------IQKIIPTLLDALADPSCYTPE---CLDSLGATTFVAEVDAPSLALMVPILKR----GLAERSTSIKRKTA 393 (569)
T ss_pred cHH-------HHHHHHHHHHHhcCcccchHH---HHHhhcceeeeeeecchhHHHHHHHHHH----HHhhccchhhhhHH
Confidence 333 445554444444555312111 22222222456667665 4442333333 34566677778888
Q ss_pred HHHHhhcCCHHHHHHHh
Q 012448 324 EALGQIGSSIQGATLLL 340 (463)
Q Consensus 324 dtlG~Igss~eGk~~L~ 340 (463)
..+|+.++-++-.+-+.
T Consensus 394 ~IidNm~~LveDp~~la 410 (569)
T KOG1242|consen 394 IIIDNMCKLVEDPKDLA 410 (569)
T ss_pred HHHHHHHHhhcCHHHHh
Confidence 88999998664444443
No 41
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.78 E-value=0.0046 Score=59.28 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=86.8
Q ss_pred hhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhch-HHHHHHhhcCCCHHH
Q 012448 18 SDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHY-MPFVQVGLTADSHSV 96 (463)
Q Consensus 18 ~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~-~~~l~~gL~h~~~~V 96 (463)
++++.+.|.+=+..+. .-+|.|+..+.+++ +.+++.+..+|..+...-+ ..+++ .+.+..|.+|.++.|
T Consensus 78 ~~l~~~l~~~~~~~~~-----~~l~~Ll~~~~~~~--~~i~~~a~~~L~~i~~~~~---~~~~~~~~~l~~~~~~Kn~~v 147 (228)
T PF12348_consen 78 SDLARQLGSHFEPYAD-----ILLPPLLKKLGDSK--KFIREAANNALDAIIESCS---YSPKILLEILSQGLKSKNPQV 147 (228)
T ss_dssp HHHHHHHGGGGHHHHH-----HHHHHHHHGGG-----HHHHHHHHHHHHHHHTTS----H--HHHHHHHHHHTT-S-HHH
T ss_pred HHHHHHHhHhHHHHHH-----HHHHHHHHHHcccc--HHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHhCCCHHH
Confidence 4555553333333333 34689999999877 7888899999999976544 22344 889999999999999
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448 97 KRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN 158 (463)
Q Consensus 97 r~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~ 158 (463)
|..++..+..++.....+...+..-..=..+.+.+..++.|++.+|-..|-.++..+.++.|
T Consensus 148 R~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 148 REECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 99999999999987631011011100003588999999999999999999999999977765
No 42
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.72 E-value=0.0059 Score=49.22 Aligned_cols=86 Identities=21% Similarity=0.299 Sum_probs=64.3
Q ss_pred hHHHHHcc-ccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448 41 LSVILNTL-QTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL 119 (463)
Q Consensus 41 l~~L~~~L-~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~ 119 (463)
+|.|+..| ++.+ +..+..++.+|..+ . .++..+.|...++++++.||..++++++++- ..
T Consensus 1 i~~L~~~l~~~~~--~~vr~~a~~~L~~~----~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~--- 61 (88)
T PF13646_consen 1 IPALLQLLQNDPD--PQVRAEAARALGEL----G----DPEAIPALIELLKDEDPMVRRAAARALGRIG------DP--- 61 (88)
T ss_dssp HHHHHHHHHTSSS--HHHHHHHHHHHHCC----T----HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HH---
T ss_pred CHHHHHHHhcCCC--HHHHHHHHHHHHHc----C----CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CH---
Confidence 57889989 5444 77888888888844 1 2356888888999999999999999999851 12
Q ss_pred HHhhccCcHHHHHHhhcCCc-hHHHHHHHHHHH
Q 012448 120 QLLIDYEIYPLLLDCLINGN-EEVATASMDAIK 151 (463)
Q Consensus 120 ~~~~~~~l~~~li~~l~d~d-~~va~~A~~~L~ 151 (463)
+.++.+...+.+++ ..|...|+.+|.
T Consensus 62 ------~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 ------EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 46777888787754 556888888774
No 43
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.02 Score=62.93 Aligned_cols=199 Identities=16% Similarity=0.218 Sum_probs=131.5
Q ss_pred HHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 012448 30 AAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLE 109 (463)
Q Consensus 30 ~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~ 109 (463)
+.||++. +.+|..|++.- |+.++.+..+|-|+|- ++|..+-+. .+-|..-|+.|||+|...|.+-++.+++
T Consensus 140 dLARDLa-----~Dv~tLL~ssk--pYvRKkAIl~lykvFL-kYPeAlr~~-FprL~EkLeDpDp~V~SAAV~VICELAr 210 (877)
T KOG1059|consen 140 DLARDLA-----DDVFTLLNSSK--PYVRKKAILLLYKVFL-KYPEALRPC-FPRLVEKLEDPDPSVVSAAVSVICELAR 210 (877)
T ss_pred hhhHHHH-----HHHHHHHhcCc--hHHHHHHHHHHHHHHH-hhhHhHhhh-HHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence 5666654 57899999876 8999999998888874 356666664 4556777999999999999999999998
Q ss_pred CCch-----hHHHHHHHhhccC---cHHHHH---HhhcCCchHHHHHHHHHHHHHhCCCCC-------ccccccCCCcc-
Q 012448 110 DSDL-----EASCALQLLIDYE---IYPLLL---DCLINGNEEVATASMDAIKKLAGFPNG-------IDIIFPADNKA- 170 (463)
Q Consensus 110 ~~~~-----~~~~~~~~~~~~~---l~~~li---~~l~d~d~~va~~A~~~L~~lak~~~~-------l~~l~~~~~~~- 170 (463)
++-- .+. ...+++... ++.=|+ ..|.-=|.-+.+.-+.-|.++-..+-. +..|+..+...
T Consensus 211 KnPknyL~LAP~-ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 211 KNPQNYLQLAPL-FYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred hCCcccccccHH-HHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 7621 112 333333221 222122 122222333443333333333222211 11111110000
Q ss_pred -----------hhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHH
Q 012448 171 -----------ATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYEL 239 (463)
Q Consensus 171 -----------~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eL 239 (463)
..+|+-++...|.-+|+=.+-++.+|++..+.+-+. .-+.++.||+| .|+-+|+-|+++++.+
T Consensus 290 ~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~D-kD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 290 MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDD-KDESIRLRALDLLYGM 363 (877)
T ss_pred CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhcc-CCchhHHHHHHHHHHH
Confidence 136777777889999999999999999999988654 56889999999 9999999999999999
Q ss_pred HhhHH
Q 012448 240 AEIQH 244 (463)
Q Consensus 240 a~t~~ 244 (463)
+....
T Consensus 364 VskkN 368 (877)
T KOG1059|consen 364 VSKKN 368 (877)
T ss_pred hhhhh
Confidence 87544
No 44
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.055 Score=60.28 Aligned_cols=270 Identities=14% Similarity=0.186 Sum_probs=178.3
Q ss_pred ccCcHHHHHHhhcC----CchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhc
Q 012448 124 DYEIYPLLLDCLIN----GNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSV 199 (463)
Q Consensus 124 ~~~l~~~li~~l~d----~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~ 199 (463)
+++++-++.+||+. ++--|--.|..+|..|+ ++++- +++.+ ...+++.+.++.+|..+.-|++++=..
T Consensus 101 ~qdvllLltNslknDL~s~nq~vVglAL~alg~i~--s~Ema----rdlap--eVe~Ll~~~~~~irKKA~Lca~r~irK 172 (866)
T KOG1062|consen 101 RQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC--SPEMA----RDLAP--EVERLLQHRDPYIRKKAALCAVRFIRK 172 (866)
T ss_pred chHHHHHHHHHHHhhccCCCeeehHHHHHHhhccC--CHHHh----HHhhH--HHHHHHhCCCHHHHHHHHHHHHHHHHc
Confidence 45688888888764 45556667888888886 33331 23444 666788899999999999999999999
Q ss_pred CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhH
Q 012448 200 SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMI 278 (463)
Q Consensus 200 S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili 278 (463)
.|++.+. +++..-..|.+ .|.-|=+..+.++.++++ ++++..|-.+ .++.++.++.+..+-.+
T Consensus 173 ~P~l~e~-----f~~~~~~lL~e-k~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~y-------- 236 (866)
T KOG1062|consen 173 VPDLVEH-----FVIAFRKLLCE-KHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGY-------- 236 (866)
T ss_pred CchHHHH-----hhHHHHHHHhh-cCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCC--------
Confidence 9999875 45666667778 899999999999999999 8999988877 77777777766444333
Q ss_pred hhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhc
Q 012448 279 SGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQ 358 (463)
Q Consensus 279 ~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~ 358 (463)
.+.-++....|. +.+ . ..+. +++.+-.+|++..+.--|-|+++++..|--+..-. ..+=+.+..+++.-
T Consensus 237 ----speydv~gi~dP-FLQ-i-~iLr-lLriLGq~d~daSd~M~DiLaqvatntdsskN~Gn---AILYE~V~TI~~I~ 305 (866)
T KOG1062|consen 237 ----SPEYDVHGISDP-FLQ-I-RILR-LLRILGQNDADASDLMNDILAQVATNTDSSKNAGN---AILYECVRTIMDIR 305 (866)
T ss_pred ----CCccCccCCCch-HHH-H-HHHH-HHHHhcCCCccHHHHHHHHHHHHHhcccccccchh---HHHHHHHHHHHhcc
Confidence 121012221211 111 0 1121 34556778999999999999999985553221111 13445667777777
Q ss_pred cchh-hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhH------HHHHHh-cCCHHHHHHHHHH
Q 012448 359 GHGK-QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSG------LFLSVL-QQAAEIRLAGYRM 430 (463)
Q Consensus 359 ~~~~-k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~------~~~~~~-qpF~elr~A~~~~ 430 (463)
.++. |+.|.++|+.++... ++|..- =+=..|.+.+ ..+|.. .|+.-+ -|.+-||.=|+.+
T Consensus 306 ~~~~LrvlainiLgkFL~n~--d~NirY--vaLn~L~r~V--------~~d~~avqrHr~tIleCL~DpD~SIkrralEL 373 (866)
T KOG1062|consen 306 SNSGLRVLAINILGKFLLNR--DNNIRY--VALNMLLRVV--------QQDPTAVQRHRSTILECLKDPDVSIKRRALEL 373 (866)
T ss_pred CCchHHHHHHHHHHHHhcCC--ccceee--eehhhHHhhh--------cCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 7766 999999999998854 222110 0000122222 223332 244444 8889999999999
Q ss_pred HHHhhcCchh
Q 012448 431 ITGLVARPWC 440 (463)
Q Consensus 431 l~~l~~~~Wg 440 (463)
..+|++-.--
T Consensus 374 s~~lvn~~Nv 383 (866)
T KOG1062|consen 374 SYALVNESNV 383 (866)
T ss_pred HHHHhccccH
Confidence 9888876543
No 45
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.29 Score=52.90 Aligned_cols=280 Identities=16% Similarity=0.144 Sum_probs=170.3
Q ss_pred hccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHH
Q 012448 69 FKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMD 148 (463)
Q Consensus 69 l~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~ 148 (463)
++.+... ..++..+.+..|+..++..||--||..+-.+++-. . -.-+.--++++..+....+|.|.+|...| .
T Consensus 74 Lg~~~~~-Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~---k--~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-e 146 (675)
T KOG0212|consen 74 LGIKDAG-YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA---K--GEVLVYFNEIFDVLCKLSADSDQNVRGGA-E 146 (675)
T ss_pred hccccHH-HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHh---c--cCcccchHHHHHHHHHHhcCCccccccHH-H
Confidence 3344333 56778999999999999999999999988876532 1 11233445688888888999999997744 4
Q ss_pred HHHHHhCCCC--CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcC-HHHHHHHHhhccHHHHHhhcCCCCc
Q 012448 149 AIKKLAGFPN--GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVS-RSVASVIFKANLLTLLEEGVSKKND 225 (463)
Q Consensus 149 ~L~~lak~~~--~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S-~~~~~~v~~sgl~~~ll~eL~~~~D 225 (463)
.|-++-|.-. .....-=+..++ -|+..+-..|+..|.=+.+-+-.+-++- -+...+. ..+++-+++-|.|..|
T Consensus 147 LLdRLikdIVte~~~tFsL~~~ip--LL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl--~~~ldGLf~~LsD~s~ 222 (675)
T KOG0212|consen 147 LLDRLIKDIVTESASTFSLPEFIP--LLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYL--PSLLDGLFNMLSDSSD 222 (675)
T ss_pred HHHHHHHHhccccccccCHHHHHH--HHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcc--hHHHHHHHHHhcCCcH
Confidence 4444432210 000111123344 5555555678888888887777766553 3444444 3577888888888555
Q ss_pred HHHHHhHH---HHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcc-ccccchhcchhhhhhhH
Q 012448 226 TLETLSIL---ELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLS-KDDSHMFIDESSAKTVI 301 (463)
Q Consensus 226 vLv~lnal---ell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~-f~~~~~~~~~~~~k~~p 301 (463)
..-++.-. |.|.|+..+|.+.+|-. .+.-++.-+ .+.+|+++.-|+.-.-...+ +|.. ....++
T Consensus 223 eVr~~~~t~l~~fL~eI~s~P~s~d~~~---~i~vlv~~l--~ss~~~iq~~al~Wi~efV~i~g~~-------~l~~~s 290 (675)
T KOG0212|consen 223 EVRTLTDTLLSEFLAEIRSSPSSMDYDD---MINVLVPHL--QSSEPEIQLKALTWIQEFVKIPGRD-------LLLYLS 290 (675)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccCccc---chhhccccc--cCCcHHHHHHHHHHHHHHhcCCCcc-------hhhhhh
Confidence 55545555 88999999888874422 112222211 23778766545332222221 1111 122244
Q ss_pred HHHHHHhccccCCCh-hhhhHHHHHHHhhc---CCHHHHHHHhhcCchhHHHHHHHHHhhccc---hhhHhHHhhhHHHh
Q 012448 302 SAIDGRLGFLQSQDS-DECESALEALGQIG---SSIQGATLLLLCLPPAARHVIDAAFDRQGH---GKQLAALHGLANIA 374 (463)
Q Consensus 302 ~~l~~~f~~~~~~d~-~~~~~A~dtlG~Ig---ss~eGk~~L~~~~~~~~~~~l~~~~~~~~~---~~k~r~L~al~~Il 374 (463)
..+..++.++.+++. +++.+|...-|.+- ++..+++-+. ++.+++...++.++ ..|+.+|+-+..++
T Consensus 291 ~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id------~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~ 364 (675)
T KOG0212|consen 291 GILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEID------YGSIIEVLTKYLSDDREETRIAVLNWIILLY 364 (675)
T ss_pred hhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccc------hHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 555556666777766 78888888766544 4555554433 34555555555554 44999999999988
Q ss_pred cCC
Q 012448 375 GKT 377 (463)
Q Consensus 375 ~~~ 377 (463)
.-.
T Consensus 365 ~~~ 367 (675)
T KOG0212|consen 365 HKA 367 (675)
T ss_pred hhC
Confidence 865
No 46
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.49 Score=52.79 Aligned_cols=196 Identities=14% Similarity=0.151 Sum_probs=124.9
Q ss_pred cCChHHHHHccccCCCCc--chH---HHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCc
Q 012448 38 RFPLSVILNTLQTKPDVP--GLE---DTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSD 112 (463)
Q Consensus 38 ~~~l~~L~~~L~~~~~~~--~~~---~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~ 112 (463)
.+.+|.|++.|..+++.. .-+ +.+-.||.-. .+.-++.+.+.+.+|+..-++.||=.=|+++.-++|.+++-.+
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~-A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~ 396 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLF-AQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPE 396 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHH-HHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCc
Confidence 356899999998765222 112 3333355533 3446778888999999999999999999999999999997652
Q ss_pred hhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc--cccccCCCcchhhHhhHhhcCCchhHHHHH
Q 012448 113 LEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI--DIIFPADNKAATDLGNLVAQCSSLGRVRVL 190 (463)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l--~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~ 190 (463)
. .. +..++ ++.+|.++..+.|+...|...+.-.|.+|+++-+.. ........++ -|.+-+ +....+--.+|
T Consensus 397 ~-~~-Lt~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~--~l~~gL-~DePrva~N~C 469 (859)
T KOG1241|consen 397 P-DK-LTPIV--IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLS--ALLEGL-NDEPRVASNVC 469 (859)
T ss_pred h-hh-hhHHH--hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHH--HHHHHh-hhCchHHHHHH
Confidence 1 22 33333 368999999999999999999999999999998722 1112222222 222111 22333444455
Q ss_pred HHHHHHHhcCHHHHHHH----HhhccHHHHHhhcCC------CCcHHHHHhHHHHHHHHHh
Q 012448 191 SLIVKLFSVSRSVASVI----FKANLLTLLEEGVSK------KNDTLETLSILELLYELAE 241 (463)
Q Consensus 191 el~v~ia~~S~~~~~~v----~~sgl~~~ll~eL~~------~~DvLv~lnalell~eLa~ 241 (463)
=.+..++.+=.++.-.- .-..+|+.+++.|-. .++-=+|..+-|-|.||.+
T Consensus 470 WAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk 530 (859)
T KOG1241|consen 470 WAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIK 530 (859)
T ss_pred HHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 55555554333222111 001356666655322 1456678888898988888
No 47
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.04 Score=59.27 Aligned_cols=225 Identities=17% Similarity=0.142 Sum_probs=150.1
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhc--cccccc-hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHH
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFK--TKYGAS-LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS 116 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~--~~~~~~-l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~ 116 (463)
.++-||+-|.+++ ++.+..+..+|...+. ...|.. -..+..+.++.-+.+|++-.+.-|+.-+...+.-.++
T Consensus 209 ~ldGLf~~LsD~s--~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~--- 283 (675)
T KOG0212|consen 209 LLDGLFNMLSDSS--DEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR--- 283 (675)
T ss_pred HHHHHHHHhcCCc--HHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc---
Confidence 3788899998876 5555554444444443 345555 3566789999999999999999999888888775522
Q ss_pred HHHHHhhccCcHHHHHHhhcCCchH----HHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHH
Q 012448 117 CALQLLIDYEIYPLLLDCLINGNEE----VATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSL 192 (463)
Q Consensus 117 ~~~~~~~~~~l~~~li~~l~d~d~~----va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el 192 (463)
.-++.-++++..++-|+.+.+.. +|..--..|.++.....+.+.+=-...++ .|.+.+.+.+..-|.-+++-
T Consensus 284 --~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~--vl~~~l~~~~~~tri~~L~W 359 (675)
T KOG0212|consen 284 --DLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIE--VLTKYLSDDREETRIAVLNW 359 (675)
T ss_pred --chhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHH--HHHHHhhcchHHHHHHHHHH
Confidence 11333457888889999999985 33333333555544443332211123344 56667778888999999999
Q ss_pred HHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccch-hh
Q 012448 193 IVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATET-IL 271 (463)
Q Consensus 193 ~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dp-l~ 271 (463)
+..+...-+-- =.|....+|+-++.-|.| .+-.|-+-+++++..+|+++....| ++.+.+.+.--.+|+ +.
T Consensus 360 i~~l~~~~p~q-l~~h~~~if~tLL~tLsd-~sd~vvl~~L~lla~i~~s~~~~~~------~~fl~sLL~~f~e~~~~l 431 (675)
T KOG0212|consen 360 IILLYHKAPGQ-LLVHNDSIFLTLLKTLSD-RSDEVVLLALSLLASICSSSNSPNL------RKFLLSLLEMFKEDTKLL 431 (675)
T ss_pred HHHHHhhCcch-hhhhccHHHHHHHHhhcC-chhHHHHHHHHHHHHHhcCcccccH------HHHHHHHHHHHhhhhHHH
Confidence 99887665433 245667899999999999 5445567789999999996554433 555555555444455 35
Q ss_pred hhhhhhHhhh
Q 012448 272 RSRAIMISGR 281 (463)
Q Consensus 272 r~~aili~g~ 281 (463)
+.||-+|..-
T Consensus 432 ~~Rg~lIIRq 441 (675)
T KOG0212|consen 432 EVRGNLIIRQ 441 (675)
T ss_pred HhhhhHHHHH
Confidence 6667666443
No 48
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.45 E-value=0.0045 Score=46.04 Aligned_cols=55 Identities=27% Similarity=0.281 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHH
Q 012448 94 HSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKL 153 (463)
Q Consensus 94 ~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~l 153 (463)
|.||+.+++.+|++.++. .. ..+. .-+++++.++.++.|++..|...|..+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~---~~-~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGC---PE-LLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTT---HH-HHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhccc---HH-HHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 679999999999987766 44 4444 3347999999999999999999999998754
No 49
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.19 Score=55.20 Aligned_cols=308 Identities=14% Similarity=0.110 Sum_probs=174.0
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhc-----------cccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFK-----------TKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLL 108 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~-----------~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~ 108 (463)
-||.|..+|.+.+ -..-|-+-..|.|+.. ++....+ .+-+..=.+||+|.+|..|+..+...+
T Consensus 129 lLp~L~~~L~s~d--~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~m----ipkfl~f~~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 129 LLPQLCELLDSPD--YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIM----IPKFLQFFKHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred HHHHHHHHhcCCc--ccccchhHHHHHHHHhhhHHHHhhhcccCchHHh----HHHHHHHHhCCChhHHHHHHhhhhhee
Confidence 3789999998865 1222333334555432 2222223 444455568999999999999988876
Q ss_pred hCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcccccc--CCCcchhhHhhHhhcCCchhH
Q 012448 109 EDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFP--ADNKAATDLGNLVAQCSSLGR 186 (463)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~--~~~~~~~~L~~~~~~~~~~vR 186 (463)
-... .. +. .-.| ..+..+...-.|++.+|.+..-.+|.-+....+ +.+.+ .+.++ ++-......|+.|-
T Consensus 203 ~~~~--qa-l~-~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~--dkl~phl~~Ive--yML~~tqd~dE~VA 273 (885)
T KOG2023|consen 203 IIQT--QA-LY-VHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRP--DKLVPHLDNIVE--YMLQRTQDVDENVA 273 (885)
T ss_pred ecCc--HH-HH-HHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH--HhcccchHHHHH--HHHHHccCcchhHH
Confidence 5441 11 11 1112 244444455589999999999999988876654 11111 12333 44445567899999
Q ss_pred HHHHHHHHHHHhcC--HH-HHHHHHhhccHHHHHhhcCCC-CcHHHHHhHHH----------HHHH--------------
Q 012448 187 VRVLSLIVKLFSVS--RS-VASVIFKANLLTLLEEGVSKK-NDTLETLSILE----------LLYE-------------- 238 (463)
Q Consensus 187 ~Rv~el~v~ia~~S--~~-~~~~v~~sgl~~~ll~eL~~~-~DvLv~lnale----------ll~e-------------- 238 (463)
.-+||....+|..+ .+ +..++. .++|.+++.+.-+ +|+.+-.|.-| +=..
T Consensus 274 LEACEFwla~aeqpi~~~~L~p~l~--kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~ 351 (885)
T KOG2023|consen 274 LEACEFWLALAEQPICKEVLQPYLD--KLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDAD 351 (885)
T ss_pred HHHHHHHHHHhcCcCcHHHHHHHHH--HHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccc
Confidence 99999999999876 12 223333 4677777775543 45544443333 0000
Q ss_pred -------------------HHh-hHHHHH---HHHhcchHHHHHHHhcccc--cchhhhhhhhhHhhhhccccccchhcc
Q 012448 239 -------------------LAE-IQHSAE---FLSRTTLLQLLCSLIGNSA--TETILRSRAIMISGRLLSKDDSHMFID 293 (463)
Q Consensus 239 -------------------La~-t~~g~~---~L~~~gi~~~L~~~i~~~~--~dpl~r~~aili~g~i~~f~~~~~~~~ 293 (463)
|-+ +..... -+....+++.+.-.+.+.- ++=.+|--|+++.|-|+- |-+.++
T Consensus 352 ~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE--GcM~g~- 428 (885)
T KOG2023|consen 352 DEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAE--GCMQGF- 428 (885)
T ss_pred cccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHH--HHhhhc-
Confidence 111 111111 1223345555555555422 333466666777777765 333221
Q ss_pred hhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC--CHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhH
Q 012448 294 ESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS--SIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLA 371 (463)
Q Consensus 294 ~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs--s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~ 371 (463)
..+.|..+-.+.+++.++-+-.+..+-|||+..|. ..+..+-.. .+.+..++++..+.-+.. +-+|-.|++
T Consensus 429 ---~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f---~pvL~~ll~~llD~NK~V-QEAAcsAfA 501 (885)
T KOG2023|consen 429 ---VPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF---KPVLEGLLRRLLDSNKKV-QEAACSAFA 501 (885)
T ss_pred ---ccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh---HHHHHHHHHHHhcccHHH-HHHHHHHHH
Confidence 12355555555567788999999999999999987 222322222 245666666655543322 445555555
Q ss_pred HHh
Q 012448 372 NIA 374 (463)
Q Consensus 372 ~Il 374 (463)
.+-
T Consensus 502 tle 504 (885)
T KOG2023|consen 502 TLE 504 (885)
T ss_pred HHH
Confidence 443
No 50
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.33 E-value=0.26 Score=52.14 Aligned_cols=205 Identities=18% Similarity=0.087 Sum_probs=124.1
Q ss_pred hchHHHHHHhh-cCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC
Q 012448 79 PHYMPFVQVGL-TADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP 157 (463)
Q Consensus 79 ~~~~~~l~~gL-~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~ 157 (463)
+...+.+...| ..+++.|+..++..+.. .. .. ..+..++.++.|++.+|...++++|..+.
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~---~~---~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--- 114 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLA---QE---DA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG--- 114 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhc---cC---Ch---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC---
Confidence 44577788888 57788888877666653 22 12 23677888999999999999999997653
Q ss_pred CCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHH
Q 012448 158 NGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLY 237 (463)
Q Consensus 158 ~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~ 237 (463)
++.... .|.+.+.+.+..+|.=+++.+.. +..+ -.+.++.-|++ .|..|+..++..+.
T Consensus 115 -------~~~a~~--~L~~~L~~~~p~vR~aal~al~~---r~~~---------~~~~L~~~L~d-~d~~Vra~A~raLG 172 (410)
T TIGR02270 115 -------GRQAEP--WLEPLLAASEPPGRAIGLAALGA---HRHD---------PGPALEAALTH-EDALVRAAALRALG 172 (410)
T ss_pred -------chHHHH--HHHHHhcCCChHHHHHHHHHHHh---hccC---------hHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 233444 66667777788888766655554 2222 23455666778 99999999999998
Q ss_pred HHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcccccc----chhc---chh--------h-hhhhH
Q 012448 238 ELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDS----HMFI---DES--------S-AKTVI 301 (463)
Q Consensus 238 eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~----~~~~---~~~--------~-~k~~p 301 (463)
.+... .....|...+. ..||-+|.-++-..+.+..- .. ..|. +.+ . ..+-|
T Consensus 173 ~l~~~----------~a~~~L~~al~--d~~~~VR~aA~~al~~lG~~-~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~ 239 (410)
T TIGR02270 173 ELPRR----------LSESTLRLYLR--DSDPEVRFAALEAGLLAGSR-LAWGVCRRFQVLEGGPHRQRLLVLLAVAGGP 239 (410)
T ss_pred hhccc----------cchHHHHHHHc--CCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHhccCccHHHHHHHHHHhCCch
Confidence 87652 22222433333 37777776666555555431 11 1110 111 0 00122
Q ss_pred HHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHH
Q 012448 302 SAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATL 338 (463)
Q Consensus 302 ~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~ 338 (463)
..++.+-..+ +|+..+..+++++|.+|...----+
T Consensus 240 ~a~~~L~~ll--~d~~vr~~a~~AlG~lg~p~av~~L 274 (410)
T TIGR02270 240 DAQAWLRELL--QAAATRREALRAVGLVGDVEAAPWC 274 (410)
T ss_pred hHHHHHHHHh--cChhhHHHHHHHHHHcCCcchHHHH
Confidence 2233222222 3345899999999999985443333
No 51
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=1.9 Score=48.62 Aligned_cols=139 Identities=16% Similarity=0.167 Sum_probs=114.4
Q ss_pred hccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC-Ccc--ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhc
Q 012448 123 IDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN-GID--IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSV 199 (463)
Q Consensus 123 ~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~-~l~--~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~ 199 (463)
.+.+.+.+++..+-+.|-.|...|+..|+.+-++.| .++ +++.|-.++ .|...+...-+.+|=-+.-++..+.+-
T Consensus 119 k~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS--~lmdlL~DsrE~IRNe~iLlL~eL~k~ 196 (970)
T KOG0946|consen 119 KNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGIS--KLMDLLRDSREPIRNEAILLLSELVKD 196 (970)
T ss_pred cCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHH--HHHHHHhhhhhhhchhHHHHHHHHHcc
Confidence 445788899999999999999999999999988887 663 566778888 888888889999999999999999999
Q ss_pred CHHHHHHHHhhccHHHHHhhcCCC--CcH-HHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhc
Q 012448 200 SRSVASVIFKANLLTLLEEGVSKK--NDT-LETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIG 263 (463)
Q Consensus 200 S~~~~~~v~~sgl~~~ll~eL~~~--~Dv-Lv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~ 263 (463)
++..-..|+=.++|..++.-+... -|- +|-..|+-++--|-+ ....-+|.-..|-+++|..++.
T Consensus 197 n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~ 264 (970)
T KOG0946|consen 197 NSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLS 264 (970)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcC
Confidence 999999998888998888776542 354 888999999999998 4444566667777777765553
No 52
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=1.1 Score=46.09 Aligned_cols=205 Identities=19% Similarity=0.161 Sum_probs=138.7
Q ss_pred cccchhhchHHHHHHhh--cCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHH-hhcCCchHHHHHHHHH
Q 012448 73 YGASLIPHYMPFVQVGL--TADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLD-CLINGNEEVATASMDA 149 (463)
Q Consensus 73 ~~~~l~~~~~~~l~~gL--~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~-~l~d~d~~va~~A~~~ 149 (463)
.|..+.-+-+..++.-| +..+..|-.+.+.-+.+..-.. .. ..|.+++.++++++.. ...++...+-+.+-.+
T Consensus 138 qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h---E~-nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a 213 (461)
T KOG4199|consen 138 QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH---EV-NRQLFMELKILELILQVLNREGKTRTVRELYDA 213 (461)
T ss_pred CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh---HH-HHHHHHHhhHHHHHHHHHcccCccHHHHHHHHH
Confidence 44444444455555554 3456667777766666544333 34 6789999999999995 5556666688888877
Q ss_pred HHHHhCCCCCccccccCCCcch---------hhHhhHh-hcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhh
Q 012448 150 IKKLAGFPNGIDIIFPADNKAA---------TDLGNLV-AQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEG 219 (463)
Q Consensus 150 L~~lak~~~~l~~l~~~~~~~~---------~~L~~~~-~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~e 219 (463)
+.-+- .++.+.+.|..----+ +.|.+.+ .-.++-+-.-.+-.+..|| +..|.-..+.++|=++-++.+
T Consensus 214 ~r~l~-~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA-Vr~E~C~~I~e~GGl~tl~~~ 291 (461)
T KOG4199|consen 214 IRALL-TDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA-VRDEICKSIAESGGLDTLLRC 291 (461)
T ss_pred HHHhc-CCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH-HHHHHHHHHHHccCHHHHHHH
Confidence 76654 2334444443111000 1111111 1223444455555666666 567888899999999999999
Q ss_pred cCCCCcHHHH---HhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhc
Q 012448 220 VSKKNDTLET---LSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLL 283 (463)
Q Consensus 220 L~~~~DvLv~---lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~ 283 (463)
+++++|--.| +.|+.+|+.||-+..-=.-|++.|+.++|+..+..-.+||.+--.+|.+..++-
T Consensus 292 i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~ 358 (461)
T KOG4199|consen 292 IDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILC 358 (461)
T ss_pred HhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 9997777666 679999999999988889999999999999999999999986555555555543
No 53
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.97 E-value=0.49 Score=53.95 Aligned_cols=226 Identities=15% Similarity=0.103 Sum_probs=125.1
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhH-HHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC
Q 012448 79 PHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEA-SCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP 157 (463)
Q Consensus 79 ~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~-~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~ 157 (463)
....+.+..=+.......|..++.++..++++...+- .++.+. ++.-+...|.+.|..+++.|...|+-++..+
T Consensus 650 ~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-----vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ 724 (1233)
T KOG1824|consen 650 TEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA-----VLVELPPLISESDLHVTQLAVAFLTTLAIIQ 724 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-----HHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 3445566666666677888889999999888763221 113332 2233345667999999999999999999888
Q ss_pred CCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhcc-HHHHHhhcCC-----CCcHHHH--
Q 012448 158 NGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANL-LTLLEEGVSK-----KNDTLET-- 229 (463)
Q Consensus 158 ~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl-~~~ll~eL~~-----~~DvLv~-- 229 (463)
|....-....+++ .+-.++ +++.+.-.++...-..+-.=+-. .+.++ +..++.++.. ..|-+-+
T Consensus 725 ps~l~~~~~~iL~--~ii~ll--~Spllqg~al~~~l~~f~alV~t----~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa 796 (1233)
T KOG1824|consen 725 PSSLLKISNPILD--EIIRLL--RSPLLQGGALSALLLFFQALVIT----KEPDLDYISLLSLLTAPVYEQVTDGLHKQA 796 (1233)
T ss_pred cHHHHHHhhhhHH--HHHHHh--hCccccchHHHHHHHHHHHHHhc----CCCCccHHHHHHHHcCCcccccccchhHHH
Confidence 7544334444554 333233 34444444443332221110000 01111 3334444332 0121111
Q ss_pred -HhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHH
Q 012448 230 -LSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGR 307 (463)
Q Consensus 230 -lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~ 307 (463)
.+.+.|...|.. .++ ....+..++..-+..++.+.-.+-.++++.|.+.- .. ... -...||..+-
T Consensus 797 ~~siA~cvA~Lt~~~~~-----~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr--~~---~~s-~~~e~~~~ii-- 863 (1233)
T KOG1824|consen 797 YYSIAKCVAALTCACPQ-----KSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGR--RK---DLS-PQNELKDTII-- 863 (1233)
T ss_pred HHHHHHHHHHHHHhccc-----cchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhcc--CC---CCC-cchhhHHHHH--
Confidence 113333333333 221 23456777777777666444456677777777665 11 101 1233555443
Q ss_pred hccccCCChhhhhHHHHHHHhhcC
Q 012448 308 LGFLQSQDSDECESALEALGQIGS 331 (463)
Q Consensus 308 f~~~~~~d~~~~~~A~dtlG~Igs 331 (463)
+.+.++..+++.+|.-+||.++.
T Consensus 864 -eaf~sp~edvksAAs~ALGsl~v 886 (1233)
T KOG1824|consen 864 -EAFNSPSEDVKSAASYALGSLAV 886 (1233)
T ss_pred -HHcCCChHHHHHHHHHHhhhhhc
Confidence 45678999999999999999987
No 54
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.95 E-value=0.023 Score=45.71 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=59.1
Q ss_pred HHHHHhh-cCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc
Q 012448 83 PFVQVGL-TADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID 161 (463)
Q Consensus 83 ~~l~~gL-~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~ 161 (463)
++|...| +++++.||..+++.++++ . .. .+++.++..+.|++..|...|+.+|.+++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~---~---~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------- 59 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL---G---DP---------EAIPALIELLKDEDPMVRRAAARALGRIG------- 59 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC---T---HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc---C---CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------
Confidence 5677777 999999999999999953 2 22 45888889999999999999999999885
Q ss_pred ccccCCCcchhhHhhHhhcCCc-hhHHHH
Q 012448 162 IIFPADNKAATDLGNLVAQCSS-LGRVRV 189 (463)
Q Consensus 162 ~l~~~~~~~~~~L~~~~~~~~~-~vR~Rv 189 (463)
++..++ .|.+.+.+.++ .+|.-+
T Consensus 60 ---~~~~~~--~L~~~l~~~~~~~vr~~a 83 (88)
T PF13646_consen 60 ---DPEAIP--ALIKLLQDDDDEVVREAA 83 (88)
T ss_dssp ---HHHTHH--HHHHHHTC-SSHHHHHHH
T ss_pred ---CHHHHH--HHHHHHcCCCcHHHHHHH
Confidence 234555 67755555444 345433
No 55
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.92 E-value=0.26 Score=54.88 Aligned_cols=265 Identities=8% Similarity=0.029 Sum_probs=158.9
Q ss_pred HHHHccccC--CCCcchHHHHHHHHHHHhccccc--cchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448 43 VILNTLQTK--PDVPGLEDTLVVCLERIFKTKYG--ASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA 118 (463)
Q Consensus 43 ~L~~~L~~~--~~~~~~~~~~~~vL~~il~~~~~--~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~ 118 (463)
.|+.|+... ++.+..+--.+.+|..++.+..| -+....+...|-.|....--.+=..-++++|+++--. +. -
T Consensus 553 ~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplm---d~-e 628 (1172)
T KOG0213|consen 553 PLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLM---DA-E 628 (1172)
T ss_pred HHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccc---cH-H
Confidence 455555543 22244555555688888766655 3555667888888888887777788899999987543 22 1
Q ss_pred HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc-ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448 119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID-IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF 197 (463)
Q Consensus 119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~-~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia 197 (463)
..-.-..+++.-++...+.||.+.+++..+++++.+... |.+ .-...+.++ -.+. ..-..-.-.-+|-|--+|...
T Consensus 629 ya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~-Gv~~~y~r~dilp-~ff~-~fw~rrmA~drr~ykqlv~tt 705 (1172)
T KOG0213|consen 629 YASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATD-GVEPAYIRFDILP-EFFF-SFWGRRMALDRRNYKQLVDTT 705 (1172)
T ss_pred HHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhccc-CCCHHHHhhhhhH-HHHh-hhhhhhhhccccchhhHHHHH
Confidence 112222356677788999999999999999999998654 542 111222222 1121 111111122233343333332
Q ss_pred hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh--hHHHHHHHHhcchHHHHHHHhcccc-cchhhhhh
Q 012448 198 SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE--IQHSAEFLSRTTLLQLLCSLIGNSA-TETILRSR 274 (463)
Q Consensus 198 ~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~--t~~g~~~L~~~gi~~~L~~~i~~~~-~dpl~r~~ 274 (463)
.+.++.+=.+.+++.++.++++ +-.-.|.-++|.+..+.. ...+..-=.....++.|+.-++..+ +|.
T Consensus 706 ---v~ia~KvG~~~~v~R~v~~lkd-e~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~----- 776 (1172)
T KOG0213|consen 706 ---VEIAAKVGSDPIVSRVVLDLKD-EPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS----- 776 (1172)
T ss_pred ---HHHHHHhCchHHHHHHhhhhcc-ccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-----
Confidence 3344455556788999999999 888888888888877765 2222221222334455544444433 444
Q ss_pred hhhHhhhhc---cccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448 275 AIMISGRLL---SKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS 331 (463)
Q Consensus 275 aili~g~i~---~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs 331 (463)
+|.-||-. .+|+- +-+..|+.+..++..+....+..+.-|+|++|.|+.
T Consensus 777 -vml~gfg~V~~~lg~r-------~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~ 828 (1172)
T KOG0213|consen 777 -VMLLGFGTVVNALGGR-------VKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAK 828 (1172)
T ss_pred -hhhhhHHHHHHHHhhc-------cccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 23333311 12221 223456667777777888999999999999999885
No 56
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.66 E-value=0.034 Score=46.98 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=58.6
Q ss_pred cchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 012448 75 ASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLA 154 (463)
Q Consensus 75 ~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~la 154 (463)
....+.+.+.+..|++.++++||-.+|.++..+++.. ...... .=++++..+...+.|+|.+|...| ..|.++-
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~--~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILP--YFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 3455567899999999999999999999999998865 220222 224699999999999999998865 7777665
Q ss_pred C
Q 012448 155 G 155 (463)
Q Consensus 155 k 155 (463)
|
T Consensus 96 k 96 (97)
T PF12755_consen 96 K 96 (97)
T ss_pred c
Confidence 4
No 57
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.65 E-value=1.3 Score=52.94 Aligned_cols=119 Identities=17% Similarity=0.267 Sum_probs=85.2
Q ss_pred HHHHhcCC--hHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhC
Q 012448 33 KKFLDRFP--LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLED 110 (463)
Q Consensus 33 ~~~~~~~~--l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~ 110 (463)
+.|..+|+ |..|+..|.+.. ...+..+--||..+-.+-...-..+.+...+..=+...+..||+.|+.-+||-+-.
T Consensus 808 r~f~~sfD~yLk~Il~~l~e~~--ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~ 885 (1692)
T KOG1020|consen 808 RSFSQSFDPYLKLILSVLGENA--IALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS 885 (1692)
T ss_pred hHHHHhhHHHHHHHHHHhcCch--HHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc
Confidence 44444443 567777887544 55565655577776433322234566788888889999999999999999986643
Q ss_pred CchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccc
Q 012448 111 SDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDI 162 (463)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~ 162 (463)
. .. .. ...|..|+..+.|+-++|.+-|++++.+|+...|-...
T Consensus 886 ~---~e-~~-----~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~ 928 (1692)
T KOG1020|consen 886 I---PE-LI-----FQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK 928 (1692)
T ss_pred c---HH-HH-----HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh
Confidence 3 11 11 14688899999999999999999999999988875543
No 58
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.64 E-value=0.18 Score=56.77 Aligned_cols=119 Identities=21% Similarity=0.199 Sum_probs=53.4
Q ss_pred cchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHh
Q 012448 55 PGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDC 134 (463)
Q Consensus 55 ~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~ 134 (463)
.++++.+=..|.++ ++.-+...--....++.-|+||||-+|..|++.++.+ +. .+ +.. .+++.|..|
T Consensus 69 ~ElKrL~ylYl~~y--ak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l--~~---~e-l~~-----~~~~~ik~~ 135 (757)
T COG5096 69 VELKRLLYLYLERY--AKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL--RV---KE-LLG-----NIIDPIKKL 135 (757)
T ss_pred HHHHHHHHHHHHHH--hccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc--Ch---HH-HHH-----HHHHHHHHH
Confidence 34444444455544 2211222212345555555555555555555555553 11 11 111 244455555
Q ss_pred hcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHH
Q 012448 135 LINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVL 190 (463)
Q Consensus 135 l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~ 190 (463)
+.|+...|-+.|+-++.++-+-.+ +-+-+.+... .++.++...|++|..-++
T Consensus 136 l~d~~ayVRk~Aalav~kly~ld~--~l~~~~g~~~--~l~~l~~D~dP~Vi~nAl 187 (757)
T COG5096 136 LTDPHAYVRKTAALAVAKLYRLDK--DLYHELGLID--ILKELVADSDPIVIANAL 187 (757)
T ss_pred ccCCcHHHHHHHHHHHHHHHhcCH--hhhhcccHHH--HHHHHhhCCCchHHHHHH
Confidence 555555555555555555544432 1122222443 444444455555554433
No 59
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=95.57 E-value=0.64 Score=49.26 Aligned_cols=199 Identities=13% Similarity=0.011 Sum_probs=129.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID 161 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~ 161 (463)
.+.|..+|..+++.||.-++++++.+ .. ....+.|+..+.+++..|...++.++.....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i--~~-------------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------ 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWL--GG-------------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------ 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC--Cc-------------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------
Confidence 78889999999999999999999984 11 1456677788899999999988887776321
Q ss_pred ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 162 IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 162 ~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
+..+ .|.+.+.+.|..||.+++..+..+... ...+.+..-+.+ .|.-||-.+++-+..+..
T Consensus 147 -----~~~~--~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d-~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 147 -----DPGP--ALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRD-SDPEVRFAALEAGLLAGS 207 (410)
T ss_pred -----ChHH--HHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcC-CCHHHHHHHHHHHHHcCC
Confidence 1223 566678899999999999999887643 234445556888 999999999988877744
Q ss_pred hHHHHHHH----HhcchHH--------------HHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHH
Q 012448 242 IQHSAEFL----SRTTLLQ--------------LLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISA 303 (463)
Q Consensus 242 t~~g~~~L----~~~gi~~--------------~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~ 303 (463)
++...-+ ...|... ...+.+.....||.+|--++...|++.- .+..|..
T Consensus 208 -~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~vr~~a~~AlG~lg~------------p~av~~L 274 (410)
T TIGR02270 208 -RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAATRREALRAVGLVGD------------VEAAPWC 274 (410)
T ss_pred -HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChhhHHHHHHHHHHcCC------------cchHHHH
Confidence 3333222 2223222 1222222222444445444455555443 1334555
Q ss_pred HHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHH
Q 012448 304 IDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLL 339 (463)
Q Consensus 304 l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L 339 (463)
++.+ .|+...-.|-+++..|-- -.++..+.
T Consensus 275 ~~~l------~d~~~aR~A~eA~~~ItG~~l~~~~l~ 305 (410)
T TIGR02270 275 LEAM------REPPWARLAGEAFSLITGMDVALEELA 305 (410)
T ss_pred HHHh------cCcHHHHHHHHHHHHhhCCCcchhhhc
Confidence 5532 355588899999988754 45555443
No 60
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.48 E-value=0.025 Score=37.27 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhC
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLED 110 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~ 110 (463)
.+.+..++++|++.||..+++.++.+.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 57889999999999999999999998875
No 61
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=95.48 E-value=1.2 Score=50.02 Aligned_cols=305 Identities=16% Similarity=0.182 Sum_probs=184.8
Q ss_pred HhcCChHHHHHccccCCCCcchHHHHHHHHHHH-hccccccchhhch--HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCc
Q 012448 36 LDRFPLSVILNTLQTKPDVPGLEDTLVVCLERI-FKTKYGASLIPHY--MPFVQVGLTADSHSVKRLACKTVTCLLEDSD 112 (463)
Q Consensus 36 ~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~i-l~~~~~~~l~~~~--~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~ 112 (463)
-....||.-+.-|.+++ +.+.-.+++.|..+ |+.-..-.-..++ ...|+.-|.|+++.|..-+|+++.+++-...
T Consensus 230 w~d~~lpe~i~mL~~q~--~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQD--PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKS 307 (717)
T ss_pred ccccccHHHHHHHhccC--hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccC
Confidence 35667899999999877 66666666666654 3322222233333 7889999999999999999999999996553
Q ss_pred hhHHHHHHHhhccCcHHHHHHhhcC-CchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh------------
Q 012448 113 LEASCALQLLIDYEIYPLLLDCLIN-GNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA------------ 179 (463)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~li~~l~d-~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~------------ 179 (463)
+.+. - -.+.+.+=++.++..+.. .|.+|.+....+|.+|+.+ +.+....-.+.+. .|.+.+-
T Consensus 308 ~~~N-K-lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~al~--tLt~~vI~P~Sgw~~~~~~ 382 (717)
T KOG1048|consen 308 TDSN-K-LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSALS--TLTDNVIIPHSGWEEEPAP 382 (717)
T ss_pred Cccc-c-hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHHHH--HHHHhhcccccccCCCCcc
Confidence 3111 2 245556667788877775 6788999999999999887 3332111111222 2221111
Q ss_pred --cCCchhHHHHHHHHHHHHhcCHHHHHHHHh-hccHHHHHhhcC------CCCcHHHHHhHHHHHHHHHhh-----HHH
Q 012448 180 --QCSSLGRVRVLSLIVKLFSVSRSVASVIFK-ANLLTLLEEGVS------KKNDTLETLSILELLYELAEI-----QHS 245 (463)
Q Consensus 180 --~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~-sgl~~~ll~eL~------~~~DvLv~lnalell~eLa~t-----~~g 245 (463)
..+..+-+++--|+=++++.+.+.-+...+ .|+++.|+.-+. +.||--| =||+.+++.|.-- +..
T Consensus 383 ~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~V-ENcvCilRNLSYrl~~Evp~~ 461 (717)
T KOG1048|consen 383 RKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSV-ENCVCILRNLSYRLEAEVPPK 461 (717)
T ss_pred cccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhH-HHHHHHHhhcCchhhhhcCHh
Confidence 124667788888999999988888776543 577777776543 2144444 4899999877542 222
Q ss_pred HH-------------------------------------------------HHHhcchHHHHHHHhcccccchhhhhhhh
Q 012448 246 AE-------------------------------------------------FLSRTTLLQLLCSLIGNSATETILRSRAI 276 (463)
Q Consensus 246 ~~-------------------------------------------------~L~~~gi~~~L~~~i~~~~~dpl~r~~ai 276 (463)
+. ||.+..+++-=..++..+.++-.+ -+.
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~Tl--Eas 539 (717)
T KOG1048|consen 462 YRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTL--EAS 539 (717)
T ss_pred hhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHH--HHh
Confidence 22 222222222212222211111000 000
Q ss_pred hHhhhh---ccccccc-hhcch---hhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHH
Q 012448 277 MISGRL---LSKDDSH-MFIDE---SSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARH 349 (463)
Q Consensus 277 li~g~i---~~f~~~~-~~~~~---~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~ 349 (463)
.|-+ .++...+ .++-+ +-+|+.|++++ +++.+|+....++.-.|+++..-..-|..+-+. ++++
T Consensus 540 --aGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~----ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~---a~~~ 610 (717)
T KOG1048|consen 540 --AGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVE----LLRNDDSDVVRSAAGALRNLSRDIRNKELIGKY---AIPD 610 (717)
T ss_pred --hhhHhhhhccCCcchhHHHhhhhhhccCccHHHH----HHhcCCchHHHHHHHHHhhhccCchhhhhhhcc---hHHH
Confidence 0000 0000000 00000 13677777555 678999999999999999999999999988854 8888
Q ss_pred HHHHHHhhcc
Q 012448 350 VIDAAFDRQG 359 (463)
Q Consensus 350 ~l~~~~~~~~ 359 (463)
++...=....
T Consensus 611 lv~~Lp~~~~ 620 (717)
T KOG1048|consen 611 LVRCLPGSGP 620 (717)
T ss_pred HHHhCcCCCC
Confidence 8887665555
No 62
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=95.34 E-value=2.5 Score=44.77 Aligned_cols=78 Identities=17% Similarity=0.091 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHhhc-cHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhccc
Q 012448 187 VRVLSLIVKLFSVSRSVASVIFKAN-LLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNS 265 (463)
Q Consensus 187 ~Rv~el~v~ia~~S~~~~~~v~~sg-l~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~ 265 (463)
-|++|+.|-+. .-.|++++..+.| +|+.++..+++ +|.-++....=-+..+|.+...+.|++++|++.+|.+.+...
T Consensus 291 k~~~el~vlll-tGDeSMq~L~~~p~~l~~~~sw~~S-~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~ 368 (604)
T KOG4500|consen 291 KRIAELDVLLL-TGDESMQKLHADPQFLDFLESWFRS-DDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQE 368 (604)
T ss_pred HhhhhHhhhhh-cCchHHHHHhcCcHHHHHHHHHhcC-CchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777666 4577788888888 99999999999 999888888888999999999999999999999999999763
Q ss_pred c
Q 012448 266 A 266 (463)
Q Consensus 266 ~ 266 (463)
.
T Consensus 369 ~ 369 (604)
T KOG4500|consen 369 K 369 (604)
T ss_pred c
Confidence 3
No 63
>PF05536 Neurochondrin: Neurochondrin
Probab=95.32 E-value=0.8 Score=50.29 Aligned_cols=65 Identities=25% Similarity=0.239 Sum_probs=55.3
Q ss_pred CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcc
Q 012448 200 SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGN 264 (463)
Q Consensus 200 S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~ 264 (463)
.++++..-.=-+-+|.+++.+.+.+|.-+.--|+++|.-++.++.|.+.+.+.|.+..|++.+.+
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN 151 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh
Confidence 67666443334788999999988566588889999999999999999999999999999999876
No 64
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.25 E-value=1.3 Score=50.72 Aligned_cols=268 Identities=14% Similarity=0.110 Sum_probs=162.9
Q ss_pred HHHHccccCCCCcchHHHHHH-HHHHHhcccc--ccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448 43 VILNTLQTKPDVPGLEDTLVV-CLERIFKTKY--GASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL 119 (463)
Q Consensus 43 ~L~~~L~~~~~~~~~~~~~~~-vL~~il~~~~--~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~ 119 (463)
.|..-..+.+ +.++=.++. .+..+-+..- -.+..+++...+.+.|+..++.|..+|.+.+|=++.+... . -.
T Consensus 9 ~LlekmtssD--KDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke-~--~l 83 (1233)
T KOG1824|consen 9 NLLEKMTSSD--KDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKE-D--QL 83 (1233)
T ss_pred HHHHHccCCC--cchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchH-H--HH
Confidence 4455555444 555544444 6666532211 1356778999999999999999999999999988866522 1 22
Q ss_pred HHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhc------CCchhHHHHHHHH
Q 012448 120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQ------CSSLGRVRVLSLI 193 (463)
Q Consensus 120 ~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~------~~~~vR~Rv~el~ 193 (463)
+.+++. +.+ +.+.+.+..=-..++....-++.-+|....-+.++++. .+.+.+.+ ..+-+||-+++++
T Consensus 84 e~~ve~-L~~---~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~--~~t~~l~~~i~~qe~~sai~~e~lDil 157 (1233)
T KOG1824|consen 84 ETIVEN-LCS---NMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCK--RITPKLKQAISKQEDVSAIKCEVLDIL 157 (1233)
T ss_pred HHHHHH-Hhh---hhccchhhhccHHHHHHHHHHhcCCCccccccccHHHH--HHHHHHHHHhhhcccchhhHHHHHHHH
Confidence 333331 111 23344443333445555555666666333333444443 22223222 2444999999999
Q ss_pred HHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhh
Q 012448 194 VKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRS 273 (463)
Q Consensus 194 v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~ 273 (463)
...-+.=-+.+-- ...+++.-++--+.. .=..+|+-++..|..|+.+-.+--| .++++.|.+.+.+.....-+|+
T Consensus 158 ~d~lsr~g~ll~~-fh~~il~~l~~ql~s-~R~aVrKkai~~l~~la~~~~~~ly---~~li~~Ll~~L~~~~q~~~~rt 232 (1233)
T KOG1824|consen 158 ADVLSRFGTLLPN-FHLSILKCLLPQLQS-PRLAVRKKAITALGHLASSCNRDLY---VELIEHLLKGLSNRTQMSATRT 232 (1233)
T ss_pred HHHHHhhcccCcc-hHHHHHHHHhhcccC-hHHHHHHHHHHHHHHHHHhcCHHHH---HHHHHHHHhccCCCCchHHHHH
Confidence 8876554443333 334677777777888 9999999999999999994333222 2356677777777666566776
Q ss_pred hhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhc
Q 012448 274 RAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIG 330 (463)
Q Consensus 274 ~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Ig 330 (463)
...++.......|.-+ - ....+..|...+.+ +.+++.|+..++..+.+++.+=
T Consensus 233 ~Iq~l~~i~r~ag~r~--~-~h~~~ivp~v~~y~-~~~e~~dDELrE~~lQale~fl 285 (1233)
T KOG1824|consen 233 YIQCLAAICRQAGHRF--G-SHLDKIVPLVADYC-NKIEEDDDELREYCLQALESFL 285 (1233)
T ss_pred HHHHHHHHHHHhcchh--h-cccchhhHHHHHHh-cccccCcHHHHHHHHHHHHHHH
Confidence 6667666655543322 0 11334455555533 4568888999999999998654
No 65
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=95.25 E-value=5.8 Score=43.91 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=119.1
Q ss_pred ChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchh-----hchHHHHHHhhcCCCHHHHHHHHH
Q 012448 28 NDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLI-----PHYMPFVQVGLTADSHSVKRLACK 102 (463)
Q Consensus 28 s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~-----~~~~~~l~~gL~h~~~~Vr~Lal~ 102 (463)
.++-..+++++..++.||..|.+.+ .-+.++....|++.+|++.+-+... .++...+..-+.|+...+-++-+.
T Consensus 84 eqd~v~svL~~~~ll~Ll~LLs~sD-~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~ 162 (678)
T KOG1293|consen 84 EQDKVDSVLRIIELLKLLQLLSESD-SLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVS 162 (678)
T ss_pred ccchHHHHHHHhhHHHHHHHhcCcc-hHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 6778899999999999999998865 3356777777999999887544322 223444444455677777777655
Q ss_pred HHHHHHhCCchhHHHHHH-HhhccCcHHHHHHhhcCCchHHHHHHHHHHH---HHhCCCCC--c---cccccCCCcchhh
Q 012448 103 TVTCLLEDSDLEASCALQ-LLIDYEIYPLLLDCLINGNEEVATASMDAIK---KLAGFPNG--I---DIIFPADNKAATD 173 (463)
Q Consensus 103 ~l~~i~~~~~~~~~~~~~-~~~~~~l~~~li~~l~d~d~~va~~A~~~L~---~lak~~~~--l---~~l~~~~~~~~~~ 173 (463)
-...+-... ..| ++-++++..-+-.|+.--...+..+|...++ ++..+++. + ..+.+.++...-.
T Consensus 163 ~~a~~s~~~------~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~ 236 (678)
T KOG1293|consen 163 RAAHLSSTK------DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCV 236 (678)
T ss_pred hhccccccc------hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhh
Confidence 444432222 233 5678889999989999989999999999999 78777762 2 1334555543113
Q ss_pred HhhHhhcCCchhHHHHHHHHHHHHhcC
Q 012448 174 LGNLVAQCSSLGRVRVLSLIVKLFSVS 200 (463)
Q Consensus 174 L~~~~~~~~~~vR~Rv~el~v~ia~~S 200 (463)
..++..+.+..-|.|.+++++.+...|
T Consensus 237 v~rL~k~~~~s~~l~sl~cl~~~~~~s 263 (678)
T KOG1293|consen 237 VTRLLKDPDFSERLRSLECLVPYLRKS 263 (678)
T ss_pred hhhhhhCCCccHHHHHHHHHHHHHhcc
Confidence 445677889999999999999999988
No 66
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=1.2 Score=51.50 Aligned_cols=220 Identities=15% Similarity=0.137 Sum_probs=136.7
Q ss_pred ChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccc---cchhhchHHHH
Q 012448 9 DSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG---ASLIPHYMPFV 85 (463)
Q Consensus 9 ~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~---~~l~~~~~~~l 85 (463)
|..-=|-||+-++.--+..+-+.|.+++... .++++..+ .+...-.+|.+|..+ ++.| .+..+.+.+.+
T Consensus 354 dt~VrWSaAKg~grvt~rlp~~Lad~vi~sv-----id~~~p~e-~~~aWHgacLaLAEL--A~rGlLlps~l~dVvplI 425 (1133)
T KOG1943|consen 354 DTVVRWSAAKGLGRVTSRLPPELADQVIGSV-----IDLFNPAE-DDSAWHGACLALAEL--ALRGLLLPSLLEDVVPLI 425 (1133)
T ss_pred cchhhHHHHHHHHHHHccCcHHHHHHHHHHH-----HHhcCcCC-chhHHHHHHHHHHHH--HhcCCcchHHHHHHHHHH
Confidence 3444466676666555556667777766543 33555443 234466788888888 6555 45666788999
Q ss_pred HHhhcCC--------CHHHHHHHH---HHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHH-
Q 012448 86 QVGLTAD--------SHSVKRLAC---KTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKL- 153 (463)
Q Consensus 86 ~~gL~h~--------~~~Vr~Lal---~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~l- 153 (463)
..||.=. -..||..|| |+++|.-+++ -..-+.+.-+-.+++..+-|+|..+-++|..++.+.
T Consensus 426 ~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~------~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~V 499 (1133)
T KOG1943|consen 426 LKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS------DLKPVLQSLASALLIVALFDREVNCRRAASAALQENV 499 (1133)
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh------hhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHh
Confidence 9888633 355898875 5555543332 112233333445667899999999999999997765
Q ss_pred hCCC---CCccccccCCCcchhhHh--------------------------hHhhcCCchhHHHHHHHHHHHHhcCHHHH
Q 012448 154 AGFP---NGIDIIFPADNKAATDLG--------------------------NLVAQCSSLGRVRVLSLIVKLFSVSRSVA 204 (463)
Q Consensus 154 ak~~---~~l~~l~~~~~~~~~~L~--------------------------~~~~~~~~~vR~Rv~el~v~ia~~S~~~~ 204 (463)
+++. .|++.+...+-+..+... +.+.+=|..+|-..-..+-+++..-++.
T Consensus 500 GR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~- 578 (1133)
T KOG1943|consen 500 GRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKY- 578 (1133)
T ss_pred ccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHh-
Confidence 5543 488877776665411111 0112224445544444444444444433
Q ss_pred HHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHH
Q 012448 205 SVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAE 247 (463)
Q Consensus 205 ~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~ 247 (463)
.. .+.++.++..... .|...|--+.--..|+..+-|+..
T Consensus 579 --~a-~~~L~~lld~~ls-~~~~~r~g~~la~~ev~~~~~~l~ 617 (1133)
T KOG1943|consen 579 --LA-DYVLPPLLDSTLS-KDASMRHGVFLAAGEVIGALRKLE 617 (1133)
T ss_pred --hc-ccchhhhhhhhcC-CChHHhhhhHHHHHHHHHHhhhhh
Confidence 22 3678999999888 999998888877788777666665
No 67
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.20 E-value=3.9 Score=44.75 Aligned_cols=115 Identities=12% Similarity=0.126 Sum_probs=90.2
Q ss_pred CChHHHHHccccCCCCcc-----hHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCch
Q 012448 39 FPLSVILNTLQTKPDVPG-----LEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDL 113 (463)
Q Consensus 39 ~~l~~L~~~L~~~~~~~~-----~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~ 113 (463)
..+|.|++.|..++++++ .-..+..||+- |.+..++.+...+..|+..-++.++=.=|+.+.-++|.+......
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLql-faq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~ 399 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQL-FAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCE 399 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHH-HHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccH
Confidence 468999999988763321 22345557764 455667777777999999999999999999999999999875521
Q ss_pred hHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448 114 EASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN 158 (463)
Q Consensus 114 ~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~ 158 (463)
+- +..++. .++|.|++...|+-+.|+..++-.+..|+.|.+
T Consensus 400 -~~-lT~~V~--qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 400 -DC-LTKIVP--QALPGIENEMSDSCLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred -HH-HHhhHH--hhhHHHHHhcccceeehhhHHHHHHHHHHHHHH
Confidence 22 444444 579999999999999999999999999998864
No 68
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.10 E-value=0.41 Score=48.58 Aligned_cols=171 Identities=18% Similarity=0.134 Sum_probs=111.6
Q ss_pred hcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhc-CCCHHHHHHHHHHHHHHHhCCchhH
Q 012448 37 DRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLT-ADSHSVKRLACKTVTCLLEDSDLEA 115 (463)
Q Consensus 37 ~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~-h~~~~Vr~Lal~~l~~i~~~~~~~~ 115 (463)
...-+|.+.+.|.+.+ +..+..+..+|..+ .. +...+.+...|+ +++..||.-+.+.++++-....- .
T Consensus 72 ~~~av~~l~~~l~d~~--~~vr~~a~~aLg~~----~~----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~-~ 140 (335)
T COG1413 72 SEEAVPLLRELLSDED--PRVRDAAADALGEL----GD----PEAVPPLVELLENDENEGVRAAAARALGKLGDERAL-D 140 (335)
T ss_pred hHHHHHHHHHHhcCCC--HHHHHHHHHHHHcc----CC----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhh-H
Confidence 3455677788888766 66777777766655 22 234566666677 79999999999999997432200 1
Q ss_pred HHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHH
Q 012448 116 SCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVK 195 (463)
Q Consensus 116 ~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ 195 (463)
. +...+.+.........+ -.+...+-..|+.+|..+. ++...+ .+.+.+...+..+|.++...+.+
T Consensus 141 ~-l~~~l~~~~~~~a~~~~-~~~~~~~r~~a~~~l~~~~----------~~~~~~--~l~~~l~~~~~~vr~~Aa~aL~~ 206 (335)
T COG1413 141 P-LLEALQDEDSGSAAAAL-DAALLDVRAAAAEALGELG----------DPEAIP--LLIELLEDEDADVRRAAASALGQ 206 (335)
T ss_pred H-HHHHhccchhhhhhhhc-cchHHHHHHHHHHHHHHcC----------ChhhhH--HHHHHHhCchHHHHHHHHHHHHH
Confidence 1 23333222211100000 1122256666666666554 344555 77778888999999999999999
Q ss_pred HHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhh
Q 012448 196 LFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEI 242 (463)
Q Consensus 196 ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t 242 (463)
+...+. .+.+.+..-+.+ ++..+|..++.-+.++..-
T Consensus 207 ~~~~~~---------~~~~~l~~~~~~-~~~~vr~~~~~~l~~~~~~ 243 (335)
T COG1413 207 LGSENV---------EAADLLVKALSD-ESLEVRKAALLALGEIGDE 243 (335)
T ss_pred hhcchh---------hHHHHHHHHhcC-CCHHHHHHHHHHhcccCcc
Confidence 998872 345666777888 9999999999988776653
No 69
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.04 E-value=1.2 Score=44.94 Aligned_cols=193 Identities=16% Similarity=0.113 Sum_probs=117.3
Q ss_pred HHHHHhccccccchhhc-hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHH
Q 012448 64 CLERIFKTKYGASLIPH-YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEV 142 (463)
Q Consensus 64 vL~~il~~~~~~~l~~~-~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~v 142 (463)
+|+.+-....+...... +...+..|++|+++.||+.+++.+|-+.--+ .. .+ .+-++++..++..++..|
T Consensus 10 lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld---~~-~a-----~~~l~l~~~~~~~~~~~v 80 (298)
T PF12719_consen 10 LLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLD---KE-LA-----KEHLPLFLQALQKDDEEV 80 (298)
T ss_pred HHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC---hH-HH-----HHHHHHHHHHHHhCCHHH
Confidence 55555433334333333 4567779999999999999999999865433 11 11 145778888888889999
Q ss_pred HHHHHHHHHHHhCCCCCccccccCCC-------cc-hhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHH
Q 012448 143 ATASMDAIKKLAGFPNGIDIIFPADN-------KA-ATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLT 214 (463)
Q Consensus 143 a~~A~~~L~~lak~~~~l~~l~~~~~-------~~-~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~ 214 (463)
...|++++.++.-.. |.+.+-.... .. ...+.+.+.+.++.+|.-+.|-++++.-...-.- ...++.
T Consensus 81 ~~~al~~l~Dll~~~-g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~ 155 (298)
T PF12719_consen 81 KITALKALFDLLLTH-GIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLS 155 (298)
T ss_pred HHHHHHHHHHHHHHc-CchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHH
Confidence 999999999996544 4432222111 00 0133345566688889999998888775532111 123444
Q ss_pred HHHhhcCC--C-CcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhccccc--chh
Q 012448 215 LLEEGVSK--K-NDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSAT--ETI 270 (463)
Q Consensus 215 ~ll~eL~~--~-~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~--dpl 270 (463)
.++-...+ | ++.-+|----=.+.-.+.+....|-....+.++.+-.......+ +|.
T Consensus 156 ~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~ 216 (298)
T PF12719_consen 156 RLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPL 216 (298)
T ss_pred HHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCch
Confidence 44444333 1 33444433333445566655556777777777777666655444 554
No 70
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=94.99 E-value=0.48 Score=51.62 Aligned_cols=111 Identities=16% Similarity=0.233 Sum_probs=81.8
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL 119 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~ 119 (463)
.+|.+|.|..+.. +..++.+..+.+.++....+ .-.+.+.+.+..++....=+-|..++.-+|.++++. .. ..
T Consensus 217 ~lp~il~~~~d~~--~~Vr~Aa~~a~kai~~~~~~-~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~a---p~-qL 289 (569)
T KOG1242|consen 217 ILPSILTNFGDKI--NKVREAAVEAAKAIMRCLSA-YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA---PK-QL 289 (569)
T ss_pred hHHHHHHHhhccc--hhhhHHHHHHHHHHHHhcCc-chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc---hH-HH
Confidence 4788999987765 66777777777777666543 333345666666666666677888999999888877 44 22
Q ss_pred HHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448 120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN 158 (463)
Q Consensus 120 ~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~ 158 (463)
..+. ++++|.+...+.|-..+|.+++..+|.+++..-+
T Consensus 290 s~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svid 327 (569)
T KOG1242|consen 290 SLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID 327 (569)
T ss_pred HHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc
Confidence 2222 3699999999999999999999999999986543
No 71
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=1.4 Score=48.78 Aligned_cols=265 Identities=18% Similarity=0.251 Sum_probs=159.7
Q ss_pred cCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhc---hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchh
Q 012448 38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPH---YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLE 114 (463)
Q Consensus 38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~---~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~ 114 (463)
++.+|.++.-.++.+ |..+..+..|+..+.-. .++.+.-. +.+-+-.--..++|.||...|.++..+++-- .
T Consensus 173 ~~mipkfl~f~~h~s--pkiRs~A~~cvNq~i~~-~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr--~ 247 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPS--PKIRSHAVGCVNQFIII-QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVR--P 247 (885)
T ss_pred HHhHHHHHHHHhCCC--hhHHHHHHhhhhheeec-CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc--H
Confidence 456788888888766 88999998888876432 23333333 3444434447889999999999999998733 1
Q ss_pred HHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccc-----------cccCCCcchhhHhhHhhcCCc
Q 012448 115 ASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDI-----------IFPADNKAATDLGNLVAQCSS 183 (463)
Q Consensus 115 ~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~-----------l~~~~~~~~~~L~~~~~~~~~ 183 (463)
+. +.--+ ++++...+...+|.|.+||-.|-.....+|..+---++ ++..=..++.++. ++ ..++
T Consensus 248 dk-l~phl--~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~-LL-~~~e 322 (885)
T KOG2023|consen 248 DK-LVPHL--DNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDII-LL-KNNE 322 (885)
T ss_pred Hh-cccch--HHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHH-Hh-cCcc
Confidence 22 22222 25888999999999999999999999999988721111 1111111111111 11 1111
Q ss_pred h---------------------------------------------hHHHH-----HHHHHHHHhcCHHHHHHHHhhccH
Q 012448 184 L---------------------------------------------GRVRV-----LSLIVKLFSVSRSVASVIFKANLL 213 (463)
Q Consensus 184 ~---------------------------------------------vR~Rv-----~el~v~ia~~S~~~~~~v~~sgl~ 213 (463)
. -..|- +++++++.++ +.+.. +|
T Consensus 323 eD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~--elL~~-----l~ 395 (885)
T KOG2023|consen 323 EDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD--ELLPI-----LL 395 (885)
T ss_pred ccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH--HHHHH-----HH
Confidence 1 12333 3344455443 33332 45
Q ss_pred HHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHH-HHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchh
Q 012448 214 TLLEEGVSKKNDTLETLSILELLYELAE-IQHSA-EFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMF 291 (463)
Q Consensus 214 ~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~-~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~ 291 (463)
|.+-..|.+ ++=.+|=..+=-+..+|+ ...|. .||- -++..|+..+.+ .-|++|+-+=-..+++..+ +
T Consensus 396 PlLk~~L~~-~~W~vrEagvLAlGAIAEGcM~g~~p~Lp--eLip~l~~~L~D--KkplVRsITCWTLsRys~w--v--- 465 (885)
T KOG2023|consen 396 PLLKEHLSS-EEWKVREAGVLALGAIAEGCMQGFVPHLP--ELIPFLLSLLDD--KKPLVRSITCWTLSRYSKW--V--- 465 (885)
T ss_pred HHHHHHcCc-chhhhhhhhHHHHHHHHHHHhhhcccchH--HHHHHHHHHhcc--CccceeeeeeeeHhhhhhh--H---
Confidence 666666777 899999998888888888 33332 3333 366777777765 5577775444445666552 1
Q ss_pred cchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhh
Q 012448 292 IDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQI 329 (463)
Q Consensus 292 ~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~I 329 (463)
..++-.+.+-+.++.+++.+-.+....+++|.-+++.+
T Consensus 466 ~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtl 503 (885)
T KOG2023|consen 466 VQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATL 503 (885)
T ss_pred hcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 11111223445566666666667777888877766544
No 72
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.84 E-value=0.12 Score=52.50 Aligned_cols=182 Identities=18% Similarity=0.203 Sum_probs=118.7
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhc----CCchHHHHHHHHHHHHHhCC
Q 012448 81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLI----NGNEEVATASMDAIKKLAGF 156 (463)
Q Consensus 81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~----d~d~~va~~A~~~L~~lak~ 156 (463)
|.+++. -|+++|+.++..++.-+..++........... .++++.++..+. .++.++-..|+..|..+.+.
T Consensus 107 ~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-----~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 107 YSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-----KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-----HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccchH-----HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 455555 99999999999999999999987743222011 244455555544 46677779999999999988
Q ss_pred CCCccccccCCCcchhhHhhHh-----hcCCchhHHHHHHHHHHH-HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHH
Q 012448 157 PNGIDIIFPADNKAATDLGNLV-----AQCSSLGRVRVLSLIVKL-FSVSRSVASVIFKANLLTLLEEGVSKKNDTLETL 230 (463)
Q Consensus 157 ~~~l~~l~~~~~~~~~~L~~~~-----~~~~~~vR~Rv~el~v~i-a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~l 230 (463)
++--+.++..+.++ .|.+.+ ...+..+....+-+++=. -+-+++.++...+.++++.+..-++.+.-.=|--
T Consensus 181 ~~~R~~f~~~~~v~--~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvR 258 (312)
T PF03224_consen 181 KEYRQVFWKSNGVS--PLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVR 258 (312)
T ss_dssp HHHHHHHHTHHHHH--HHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHH
T ss_pred chhHHHHHhcCcHH--HHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHH
Confidence 86556777777777 777665 245555555555544433 6689999999999999999999888865554555
Q ss_pred hHHHHHHHHHhhHH--HHHHHHhcchHHHHHHHhcccccchh
Q 012448 231 SILELLYELAEIQH--SAEFLSRTTLLQLLCSLIGNSATETI 270 (463)
Q Consensus 231 nalell~eLa~t~~--g~~~L~~~gi~~~L~~~i~~~~~dpl 270 (463)
-++-+++.+.+... ...-++..|+...+-.+-...=+||-
T Consensus 259 v~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded 300 (312)
T PF03224_consen 259 VSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED 300 (312)
T ss_dssp HHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence 56777888888433 66777777777766655554336664
No 73
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=2 Score=43.56 Aligned_cols=276 Identities=14% Similarity=0.095 Sum_probs=138.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhc-cCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-
Q 012448 83 PFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLID-YEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI- 160 (463)
Q Consensus 83 ~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~-~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l- 160 (463)
..++.-|..++|.||..|..-+....... ...+..+ ...++.+...+.+.+. ++.|+.+|.+++... ++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~------~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~ 76 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRG------LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELR 76 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccc------hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHH
Confidence 45777788899999999987766654432 2222222 2366777778888777 888888888887654 33
Q ss_pred cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHh------hccHHHHHhhcCCCCcHHHHHh-HH
Q 012448 161 DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFK------ANLLTLLEEGVSKKNDTLETLS-IL 233 (463)
Q Consensus 161 ~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~------sgl~~~ll~eL~~~~DvLv~ln-al 233 (463)
+++.+. ++. .+...+.+.-.-+--=+|-+++++++.-...+....+ +|+...+-.-.+.+----++.+ .+
T Consensus 77 ~~ll~~-~~k--~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA 153 (353)
T KOG2973|consen 77 KKLLQD-LLK--VLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLA 153 (353)
T ss_pred HHHHHH-HHH--HHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHH
Confidence 333322 211 1111222221112223455666666665544443322 3333333322222100111222 23
Q ss_pred HHHHHHHhhHHHHHHHHhc---------------------chHHHHHHHhcccc-cchhhhhhhh-hHhhhhccccccch
Q 012448 234 ELLYELAEIQHSAEFLSRT---------------------TLLQLLCSLIGNSA-TETILRSRAI-MISGRLLSKDDSHM 290 (463)
Q Consensus 234 ell~eLa~t~~g~~~L~~~---------------------gi~~~L~~~i~~~~-~dpl~r~~ai-li~g~i~~f~~~~~ 290 (463)
-++..|.+++.|.+|+... |++..|-+...++. -+.+.. ..+ +.+.+++|-.+.-.
T Consensus 154 ~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 154 PVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcCCccc
Confidence 4677788888888887533 33333333222222 111100 000 11112222100001
Q ss_pred hcchhhhhhhHHHHHHHh-ccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchh-hHhHHh
Q 012448 291 FIDESSAKTVISAIDGRL-GFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGK-QLAALH 368 (463)
Q Consensus 291 ~~~~~~~k~~p~~l~~~f-~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~-k~r~L~ 368 (463)
|=++-..+ .|.=++.+- +.-.++|+.++..-++++=+++.|-.|++.+... ..--++.-+........ +..|.+
T Consensus 233 ~sEEdm~~-LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~k---gvYpilRElhk~e~ded~~~ace~ 308 (353)
T KOG2973|consen 233 LSEEDMAK-LPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSK---GVYPILRELHKWEEDEDIREACEQ 308 (353)
T ss_pred cCHHHHhc-CCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhc---CchHHHHHHhcCCCcHHHHHHHHH
Confidence 10010233 444444321 2335688999999999999999999999999974 22233344444444333 445554
Q ss_pred hhHHHhc
Q 012448 369 GLANIAG 375 (463)
Q Consensus 369 al~~Il~ 375 (463)
....+.+
T Consensus 309 vvq~Lv~ 315 (353)
T KOG2973|consen 309 VVQMLVR 315 (353)
T ss_pred HHHHHHh
Confidence 4444444
No 74
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.81 E-value=6.5 Score=41.57 Aligned_cols=353 Identities=17% Similarity=0.156 Sum_probs=180.9
Q ss_pred hHHHHHccccCCCCc-chHHHHHHHHHHHhccccccchhhchHHHHHHhhcC-----CCHHHHHHHHHHHHHHHhCCchh
Q 012448 41 LSVILNTLQTKPDVP-GLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTA-----DSHSVKRLACKTVTCLLEDSDLE 114 (463)
Q Consensus 41 l~~L~~~L~~~~~~~-~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h-----~~~~Vr~Lal~~l~~i~~~~~~~ 114 (463)
+|.++.-|.++++.+ ...+.+-.+|..+ .. ...+.......+..-|.+ .+...-..++..+.+++++....
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~l--s~-~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAAL--ST-SPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHH--HC-ChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence 578889998876332 2222233344443 22 222233333333333332 26778889999999998765321
Q ss_pred H-HHHHHHhhccCcHHHHHHhh----cCC-c--hHHHHHHHHHHHHHhCCCC-Cc-cccccCCCcchhhHhhHhh-----
Q 012448 115 A-SCALQLLIDYEIYPLLLDCL----ING-N--EEVATASMDAIKKLAGFPN-GI-DIIFPADNKAATDLGNLVA----- 179 (463)
Q Consensus 115 ~-~~~~~~~~~~~l~~~li~~l----~d~-d--~~va~~A~~~L~~lak~~~-~l-~~l~~~~~~~~~~L~~~~~----- 179 (463)
. ..-.....+..+++.+.... ... + ..+=..+..++.-+-++-+ .- +.+.+ .+-+...
T Consensus 78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~-------~~~~lf~~~~~~ 150 (415)
T PF12460_consen 78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILD-------ELYSLFLSPKSF 150 (415)
T ss_pred cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHH-------HHHHHHcccccc
Confidence 2 00112222222444444322 111 1 3344444555554443332 11 11110 0000111
Q ss_pred -----cCC--chhHHHHHHH-HHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhh-HHHHHHHH
Q 012448 180 -----QCS--SLGRVRVLSL-IVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEI-QHSAEFLS 250 (463)
Q Consensus 180 -----~~~--~~vR~Rv~el-~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t-~~g~~~L~ 250 (463)
..+ .....|...+ ..-+++..++.--. ....+++.++.-..+++|...+..+++++.-++.. +.|. .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~ 226 (415)
T PF12460_consen 151 SPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---D 226 (415)
T ss_pred CCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---h
Confidence 111 1123333333 33344444433210 12247777777766668899999999999998884 3333 2
Q ss_pred hcchHHHHHHHhcccccchhhhhhhhhHhhhhcccccc-chhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhh
Q 012448 251 RTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDS-HMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQI 329 (463)
Q Consensus 251 ~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~-~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~I 329 (463)
-..+++.+...+ ....++-.+..++-+..++.- +. ++. +|. ...+++.+++++.+ +..-..|..++|.|
T Consensus 227 l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~Wi~K--aLv~R~--~~~---~~~~~~~L~~lL~~--~~~g~~aA~~f~il 296 (415)
T PF12460_consen 227 LDEFLDSLLQSI-SSSEDSELRPQALEILIWITK--ALVMRG--HPL---ATELLDKLLELLSS--PELGQQAAKAFGIL 296 (415)
T ss_pred HHHHHHHHHhhh-cccCCcchhHHHHHHHHHHHH--HHHHcC--Cch---HHHHHHHHHHHhCC--hhhHHHHHHHHhhH
Confidence 224555555554 223333345455655555443 22 221 111 12345555555555 66778899999998
Q ss_pred cCCHHHH---------HHHhhcCchhHHHHHHHHHhhccc---hhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHH
Q 012448 330 GSSIQGA---------TLLLLCLPPAARHVIDAAFDRQGH---GKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLI 397 (463)
Q Consensus 330 gss~eGk---------~~L~~~~~~~~~~~l~~~~~~~~~---~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ 397 (463)
-+..+.. +.|.+ +-.+..++....+...+ ..|...|-||+.|+..- |.+. +..+-+. |..+
T Consensus 297 ~~d~~~~l~~~~~a~vklLyk--QR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~v--P~~v-l~~~l~~-LlPL- 369 (415)
T PF12460_consen 297 LSDSDDVLNKENHANVKLLYK--QRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNV--PKSV-LLPELPT-LLPL- 369 (415)
T ss_pred hcCcHHhcCccccchhhhHHh--HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhC--CHHH-HHHHHHH-HHHH-
Confidence 8762221 33444 24555555555555543 24889999999999954 4222 2222222 2222
Q ss_pred HHHHhhCCCCChhHHHHHHhcCCHHHHHHHHHHHHHhhcCc
Q 012448 398 YEVASRSSKLTPSGLFLSVLQQAAEIRLAGYRMITGLVARP 438 (463)
Q Consensus 398 ye~~~~~~~~~p~~~~~~~~qpF~elr~A~~~~l~~l~~~~ 438 (463)
++.++.-|.+++|.+++..|..+....
T Consensus 370 --------------LlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 370 --------------LLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred --------------HHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 344456889999999999999988776
No 75
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.66 E-value=0.2 Score=50.76 Aligned_cols=181 Identities=17% Similarity=0.150 Sum_probs=118.1
Q ss_pred CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhh--ccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCC
Q 012448 91 ADSHSVKRLACKTVTCLLEDSDLEASCALQLLI--DYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADN 168 (463)
Q Consensus 91 h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~--~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~ 168 (463)
.+++.+.+.++.-+..++.....-..-...... +...+..++..+..+|..+...|+.+|..+..+.+.-..-...+.
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~ 147 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEA 147 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHH
Confidence 568888999999999988755211110222222 123788888899999999999999999999888764321100122
Q ss_pred cc--hhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhc------CCCCcHHHHHhHHHHHHHHH
Q 012448 169 KA--ATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGV------SKKNDTLETLSILELLYELA 240 (463)
Q Consensus 169 ~~--~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL------~~~~DvLv~lnalell~eLa 240 (463)
+. ...|.+.+...+..+..=+..++..+. .+++.-....+.|.++.+..-+ +++.++-++-.++=++=-|.
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS 226 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS 226 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh
Confidence 22 003332222233434445566777787 4577778888899999999988 55689999999999999999
Q ss_pred hhHHHHHHHHhcchHHHHHHHhcccccchhhh
Q 012448 241 EIQHSAEFLSRTTLLQLLCSLIGNSATETILR 272 (463)
Q Consensus 241 ~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r 272 (463)
=.++.++.+.+.+++..|++.+..+.-.-.+|
T Consensus 227 F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvR 258 (312)
T PF03224_consen 227 FEPEIAEELNKKYLIPLLADILKDSIKEKVVR 258 (312)
T ss_dssp TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHH
T ss_pred cCHHHHHHHhccchHHHHHHHHHhcccchHHH
Confidence 99999999999999999999999988778776
No 76
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=94.66 E-value=2.1 Score=48.77 Aligned_cols=230 Identities=16% Similarity=0.143 Sum_probs=162.2
Q ss_pred HhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-chhhchHHHHHHhhcCCCH
Q 012448 16 SASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-SLIPHYMPFVQVGLTADSH 94 (463)
Q Consensus 16 ~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-~l~~~~~~~l~~gL~h~~~ 94 (463)
+|+.+.+. +...-.+.+....+|.+.+.+++.. .-+++.+...+..+++-...+ +....+.+.+....+.++.
T Consensus 257 ~a~~l~~~----a~~~~~~~~~s~v~~~~~~L~~Ddq--dsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~ 330 (759)
T KOG0211|consen 257 VASNLGNI----AKVLESEIVKSEVLPTLIQLLRDDQ--DSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSW 330 (759)
T ss_pred HHhhhHHH----HHHHHHHHHHhhccHHHhhhhhcch--hhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhH
Confidence 45555555 4444457777777888887777644 356777777777777777666 7777889999999999999
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC--ccccccCCCcchh
Q 012448 95 SVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG--IDIIFPADNKAAT 172 (463)
Q Consensus 95 ~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~--l~~l~~~~~~~~~ 172 (463)
+||..+.....-+-+.- -+-.......+.....+++.+.++-.+++.-..+++..-+. ...+.+...++
T Consensus 331 ~v~~~~~~~~~~L~~~~-------~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp-- 401 (759)
T KOG0211|consen 331 RVSYMVADKFSELSSAV-------GPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILP-- 401 (759)
T ss_pred HHHHHHhhhhhhHHHHh-------ccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhH--
Confidence 99998866555432211 11222335677777888888888888888888888766541 23455666677
Q ss_pred hHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHh
Q 012448 173 DLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSR 251 (463)
Q Consensus 173 ~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~ 251 (463)
.++..++..+..+|-+....+..++-.++ .+. .-+.+++..+..+++ .|.-|++|-.+.+..+-. ...+-.+.++
T Consensus 402 ~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~-ti~~llp~~~~~l~d-e~~~V~lnli~~ls~~~~v~~v~g~~~~s 477 (759)
T KOG0211|consen 402 EVQVLVLDNALHVRSALASVITGLSPILP--KER-TISELLPLLIGNLKD-EDPIVRLNLIDKLSLLEEVNDVIGISTVS 477 (759)
T ss_pred HHHHHHhcccchHHHHHhccccccCccCC--cCc-CccccChhhhhhcch-hhHHHHHhhHHHHHHHHhccCcccchhhh
Confidence 88888888888888886666655544444 111 123577888889999 999999999998877666 6666677777
Q ss_pred cchHHHHHHHhcc
Q 012448 252 TTLLQLLCSLIGN 264 (463)
Q Consensus 252 ~gi~~~L~~~i~~ 264 (463)
+..+..|+++..+
T Consensus 478 ~slLp~i~el~~d 490 (759)
T KOG0211|consen 478 NSLLPAIVELAED 490 (759)
T ss_pred hhhhhhhhhhccc
Confidence 8888888777544
No 77
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=2.4 Score=49.55 Aligned_cols=253 Identities=19% Similarity=0.148 Sum_probs=149.7
Q ss_pred HHHHHHhccccccchhhc---hHHHHHHhhc--CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC
Q 012448 63 VCLERIFKTKYGASLIPH---YMPFVQVGLT--ADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN 137 (463)
Q Consensus 63 ~vL~~il~~~~~~~l~~~---~~~~l~~gL~--h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d 137 (463)
.+|.-++...+.+.+..+ ...-+..+++ |-|..|.+.++.-++.+++.++.+ .-+-..--.-+..+..-..+
T Consensus 73 ~LL~li~~~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~---aW~~~~t~~~~~~il~~~~h 149 (1176)
T KOG1248|consen 73 YLLVLILKYVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDAS---AWSYSSTKTELFGILAFAAH 149 (1176)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchh---hhccccHHHHHHHHHHHHhc
Confidence 477777666554444333 3555666776 999999999999999999877321 11100000123333345557
Q ss_pred CchHHHHHHHHHHHHHhCCCCC-ccccccCCCcc----hhhHhhHhhcCCchhHHHHHHHHHHHHhc-CHHHHHHHHhhc
Q 012448 138 GNEEVATASMDAIKKLAGFPNG-IDIIFPADNKA----ATDLGNLVAQCSSLGRVRVLSLIVKLFSV-SRSVASVIFKAN 211 (463)
Q Consensus 138 ~d~~va~~A~~~L~~lak~~~~-l~~l~~~~~~~----~~~L~~~~~~~~~~vR~Rv~el~v~ia~~-S~~~~~~v~~sg 211 (463)
+...+.+.|..++..+.+.|+- ....-++-... ...+...+....-+--+|.+.++-.+... -....+ .
T Consensus 150 ~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~-----s 224 (1176)
T KOG1248|consen 150 KKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIK-----S 224 (1176)
T ss_pred CchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHH-----H
Confidence 7889999999999999998873 23322111100 12333333323334456777777666544 122222 2
Q ss_pred cHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHH-HHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccc-
Q 012448 212 LLTLLEEGVSKKNDTLETLSILELLYELAEIQHS-AEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSH- 289 (463)
Q Consensus 212 l~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g-~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~- 289 (463)
+=..+++..+. .++++.++|++++..|-+...+ ..-=...-++..|..+ .-+.+|++ +..+++..+-+.+
T Consensus 225 l~e~lL~i~~~-s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l-~ps~~D~~------~t~~W~~v~~~~~~ 296 (1176)
T KOG1248|consen 225 LCEVLLNITTE-SPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTL-SPSENDDL------LTVAWLKVLNEAHD 296 (1176)
T ss_pred HHHHHHhhccc-chHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh-CCCccchH------HHHHHHHHHHHHHH
Confidence 33456777777 9999999999999999994333 2222233444444443 33457775 3467777653322
Q ss_pred hh-cchh--hhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448 290 MF-IDES--SAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS 331 (463)
Q Consensus 290 ~~-~~~~--~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs 331 (463)
.+ ..++ +....|.++..+|...++.-.....+|--++-.|+.
T Consensus 297 ~la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~ 341 (1176)
T KOG1248|consen 297 ILATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILK 341 (1176)
T ss_pred HHHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhc
Confidence 22 1122 444577777766665566666667777777777776
No 78
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.49 E-value=5.5 Score=44.88 Aligned_cols=281 Identities=16% Similarity=0.190 Sum_probs=156.6
Q ss_pred hHHHHHccccCCCCcchHHHHHHHHHHHhccccc--cchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448 41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG--ASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA 118 (463)
Q Consensus 41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~--~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~ 118 (463)
+..|.+.++++... ..-.-.++..+-.++.. ....+++..-+..-|+|+++.||+-++..+++++.--.. -. -
T Consensus 761 idgil~Afqeqtt~---d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlkt-c~-e 835 (1172)
T KOG0213|consen 761 IDGILYAFQEQTTE---DSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKT-CG-E 835 (1172)
T ss_pred HHHHHHHHHhcccc---hhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHh-cc-H
Confidence 34456666655411 11111244444334333 334566777888899999999999999999998641100 00 0
Q ss_pred HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccC--CCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448 119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPA--DNKAATDLGNLVAQCSSLGRVRVLSLIVKL 196 (463)
Q Consensus 119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~--~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i 196 (463)
-+++.- +=..+.--|+++..+|--..+++|+.|.... |+...++| +.++ .|.+++.+...+|.-...+++-.|
T Consensus 836 e~~m~~--lGvvLyEylgeeypEvLgsILgAikaI~nvi-gm~km~pPi~dllP--rltPILknrheKVqen~IdLvg~I 910 (1172)
T KOG0213|consen 836 EKLMGH--LGVVLYEYLGEEYPEVLGSILGAIKAIVNVI-GMTKMTPPIKDLLP--RLTPILKNRHEKVQENCIDLVGTI 910 (1172)
T ss_pred HHHHHH--hhHHHHHhcCcccHHHHHHHHHHHHHHHHhc-cccccCCChhhhcc--cchHhhhhhHHHHHHHHHHHHHHH
Confidence 011111 1122346889999999888888888775332 55444543 4566 777888889999999999999999
Q ss_pred HhcCHHH------HHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh--hHHHHHHHHhcchHHHHHHHhc-----
Q 012448 197 FSVSRSV------ASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE--IQHSAEFLSRTTLLQLLCSLIG----- 263 (463)
Q Consensus 197 a~~S~~~------~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~--t~~g~~~L~~~gi~~~L~~~i~----- 263 (463)
|..+++- +..|. |++ ..|+. ----.|-|+.+-+.-+|+ .||- ++..|.+.+.
T Consensus 911 adrgpE~v~aREWMRIcf--eLl----elLka-hkK~iRRaa~nTfG~IakaIGPqd--------VLatLlnnLkvqeRq 975 (1172)
T KOG0213|consen 911 ADRGPEYVSAREWMRICF--ELL----ELLKA-HKKEIRRAAVNTFGYIAKAIGPQD--------VLATLLNNLKVQERQ 975 (1172)
T ss_pred HhcCcccCCHHHHHHHHH--HHH----HHHHH-HHHHHHHHHHhhhhHHHHhcCHHH--------HHHHHHhcchHHHHH
Confidence 9998763 22333 222 23333 333457788888887777 4442 3333333222
Q ss_pred ------------ccccchhhhhhhhhHhhhhcccc----cc---chh----cchhhhhhhHHHHHHHh-ccccCCChhhh
Q 012448 264 ------------NSATETILRSRAIMISGRLLSKD----DS---HMF----IDESSAKTVISAIDGRL-GFLQSQDSDEC 319 (463)
Q Consensus 264 ------------~~~~dpl~r~~aili~g~i~~f~----~~---~~~----~~~~~~k~~p~~l~~~f-~~~~~~d~~~~ 319 (463)
....-||.-.|++| ..|=.|-- ++ ++| |.+ ..+.|.-++.-++ +.+.+.|..-+
T Consensus 976 ~RvcTtvaIaIVaE~c~pFtVLPalm-neYrtPe~nVQnGVLkalsf~Feyige-mskdYiyav~PlleDAlmDrD~vhR 1053 (1172)
T KOG0213|consen 976 NRVCTTVAIAIVAETCGPFTVLPALM-NEYRTPEANVQNGVLKALSFMFEYIGE-MSKDYIYAVTPLLEDALMDRDLVHR 1053 (1172)
T ss_pred hchhhhhhhhhhhhhcCchhhhHHHH-hhccCchhHHHHhHHHHHHHHHHHHHH-HhhhHHHHhhHHHHHhhccccHHHH
Confidence 12244555445554 22222210 11 111 222 2333433332222 34566777777
Q ss_pred hHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHH
Q 012448 320 ESALEALGQIGSSIQGATLLLLCLPPAARHVIDA 353 (463)
Q Consensus 320 ~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~ 353 (463)
..|+..+-.+.-.+-|.-. .+.+-|+|+.
T Consensus 1054 qta~~~I~Hl~Lg~~g~g~-----eda~iHLLN~ 1082 (1172)
T KOG0213|consen 1054 QTAMNVIKHLALGVPGTGC-----EDALIHLLNL 1082 (1172)
T ss_pred HHHHHHHHHHhcCCCCcCc-----HHHHHHHHHH
Confidence 8888777766655444322 2355666665
No 79
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=1.7 Score=44.71 Aligned_cols=184 Identities=16% Similarity=0.140 Sum_probs=131.4
Q ss_pred cCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHH
Q 012448 136 INGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTL 215 (463)
Q Consensus 136 ~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ 215 (463)
.+-++.=...|..-|..+..+-+...-+.+-+... .+...+.+.+..+|.++..++..++.-.|.+-+.+.+.|.++.
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~--~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLV--PLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHH--HHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 44556667778888888888777655455555554 3443888999999999999999999999999999999999999
Q ss_pred HHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcch
Q 012448 216 LEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDE 294 (463)
Q Consensus 216 ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~ 294 (463)
++.-++.+++.=++.+|+==++.+-. .+.|..-....++.+-|.+.+++...++-.+-.++...++++-...... +-
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~--d~ 248 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE--DI 248 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh--hH
Confidence 99999986777888999998888888 7888877777777999999999877777655555555555554211110 00
Q ss_pred hhhhhhHHHHHHHhccccCCChhhhhHHHHHH
Q 012448 295 SSAKTVISAIDGRLGFLQSQDSDECESALEAL 326 (463)
Q Consensus 295 ~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtl 326 (463)
.+..+++..+. ..+...|....+.|+.++
T Consensus 249 ~~~~~f~~~~~---~l~~~l~~~~~e~~l~~~ 277 (342)
T KOG2160|consen 249 ASSLGFQRVLE---NLISSLDFEVNEAALTAL 277 (342)
T ss_pred HHHhhhhHHHH---HHhhccchhhhHHHHHHH
Confidence 02222333333 234455556666666654
No 80
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.38 E-value=0.7 Score=52.20 Aligned_cols=74 Identities=14% Similarity=0.176 Sum_probs=58.4
Q ss_pred cccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHH
Q 012448 73 YGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKK 152 (463)
Q Consensus 73 ~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~ 152 (463)
...++..++.+.+.++++|+++-||+-|+-++.++-+-+ . ..+.+.|....+...+.|.|..|.+.|..+|..
T Consensus 120 ~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~----~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~ 192 (757)
T COG5096 120 RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---K----DLYHELGLIDILKELVADSDPIVIANALASLAE 192 (757)
T ss_pred ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---H----hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 456777888888888888888888888888888876654 3 467777788888888888888888888888875
Q ss_pred H
Q 012448 153 L 153 (463)
Q Consensus 153 l 153 (463)
+
T Consensus 193 i 193 (757)
T COG5096 193 I 193 (757)
T ss_pred h
Confidence 5
No 81
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=94.37 E-value=1.7 Score=45.41 Aligned_cols=224 Identities=14% Similarity=0.156 Sum_probs=142.9
Q ss_pred CCChHHHHHHhhhhccCCCCCCh-HHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-chhhchHHH
Q 012448 7 MDDSNQLLDSASDFAYHPGVQND-AAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-SLIPHYMPF 84 (463)
Q Consensus 7 ~~~~~~~~~~~~~~a~~p~~~s~-~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-~l~~~~~~~ 84 (463)
..|...+-.+|=|+..| ..++ +..+.+.+-..---+..||...+.....++|+=-..++++....+. ++-..+...
T Consensus 35 L~~~~~vraa~yRilRy--~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvra 112 (371)
T PF14664_consen 35 LSDSKEVRAAGYRILRY--LISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRA 112 (371)
T ss_pred CCCcHHHHHHHHHHHHH--HHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence 34446677777788877 3334 4455555545445567888876644445667777999998876555 455678999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccc
Q 012448 85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIF 164 (463)
Q Consensus 85 l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~ 164 (463)
++...+|+++..|..|+..+..++-.+ + +++...|-+..++..+.|+-.+++...+.++-.+..+|.--+.+-
T Consensus 113 lvaiae~~~D~lr~~cletL~El~l~~---P----~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~ 185 (371)
T PF14664_consen 113 LVAIAEHEDDRLRRICLETLCELALLN---P----ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLR 185 (371)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHhhC---H----HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhc
Confidence 999999999999999999999988765 3 366778899999999999888899999999888887774222111
Q ss_pred cCCCcchhhHhhHhh------cCCchh-HHHHHHHHH-HHHhcCHHHHHHHHhh-ccHHHHHhhcCCCCcHHHHHhHHHH
Q 012448 165 PADNKAATDLGNLVA------QCSSLG-RVRVLSLIV-KLFSVSRSVASVIFKA-NLLTLLEEGVSKKNDTLETLSILEL 235 (463)
Q Consensus 165 ~~~~~~~~~L~~~~~------~~~~~v-R~Rv~el~v-~ia~~S~~~~~~v~~s-gl~~~ll~eL~~~~DvLv~lnalel 235 (463)
....++ .-+.+... ..+... |++....++ .+-+.=+-.+-.|.+. .-+..++..|.- +..-+|...+++
T Consensus 186 ~~~dL~-~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~-p~~~ir~~Ildl 263 (371)
T PF14664_consen 186 PGFDLE-SLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRL-PNPEIRKAILDL 263 (371)
T ss_pred CCccHH-HHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 111111 01111111 112222 555444332 2322223333333332 346667777777 666677777777
Q ss_pred HHHHHh
Q 012448 236 LYELAE 241 (463)
Q Consensus 236 l~eLa~ 241 (463)
+.++-.
T Consensus 264 l~dllr 269 (371)
T PF14664_consen 264 LFDLLR 269 (371)
T ss_pred HHHHHC
Confidence 777665
No 82
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.29 E-value=0.045 Score=40.57 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=39.2
Q ss_pred chHHHHHHHHHHHhccccc--cchhhchHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 012448 56 GLEDTLVVCLERIFKTKYG--ASLIPHYMPFVQVGLTADSHSVKRLACKTVTCL 107 (463)
Q Consensus 56 ~~~~~~~~vL~~il~~~~~--~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i 107 (463)
..+..++.+|..+...... ....+++.+.|..+|+++++.||..+++++|++
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3567778888775322211 235667899999999999999999999999874
No 83
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.26 E-value=1 Score=50.09 Aligned_cols=100 Identities=17% Similarity=0.205 Sum_probs=75.2
Q ss_pred chHHHHHHHHHHHHHhCCC---------CCccccccCCCcch--hhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHH
Q 012448 139 NEEVATASMDAIKKLAGFP---------NGIDIIFPADNKAA--TDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVI 207 (463)
Q Consensus 139 d~~va~~A~~~L~~lak~~---------~~l~~l~~~~~~~~--~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v 207 (463)
++.|---+.+.+.+.-+.+ .||..++.+++-.| .++-.++.+..+-+|.|+.-++-+++-.=||++..
T Consensus 103 ~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~- 181 (877)
T KOG1059|consen 103 DTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP- 181 (877)
T ss_pred CccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh-
Confidence 4555555566666555544 24444555555330 13334667889999999999999999999998875
Q ss_pred HhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHH
Q 012448 208 FKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQH 244 (463)
Q Consensus 208 ~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~ 244 (463)
.||++...|+| +|+-|+-.|+-++.|||. .|.
T Consensus 182 ----~FprL~EkLeD-pDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 182 ----CFPRLVEKLED-PDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred ----hHHHHHHhccC-CCchHHHHHHHHHHHHHhhCCc
Confidence 69999999999 999999999999999998 554
No 84
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.12 E-value=0.19 Score=40.31 Aligned_cols=57 Identities=25% Similarity=0.204 Sum_probs=40.8
Q ss_pred hhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCC
Q 012448 319 CESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKT 377 (463)
Q Consensus 319 ~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~ 377 (463)
+-+|+|++|+||+|..|..+|.. .+.+..+++.+-..-.-+.|=-|+-+|+.|-...
T Consensus 4 lKaaLWaighIgss~~G~~lL~~--~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDE--SDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhh--cCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 45899999999999999999995 3555555555443322233667788888887754
No 85
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.63 E-value=0.64 Score=43.25 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchh
Q 012448 93 SHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAAT 172 (463)
Q Consensus 93 ~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~ 172 (463)
+|.||.-++-.+|-+..+- +. +++ ...+.+..||.|++..|.+.|+.+|+.+.... .- =+.+..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~---~~-~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d--~i-k~k~~l~~-- 66 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY---PN-LVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILED--MI-KVKGQLFS-- 66 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC---cH-HHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--ce-eehhhhhH--
Confidence 5889999999999877544 22 332 35788899999999999999999999997542 21 11223323
Q ss_pred hHhhHhhcCCchhHHHHHHHHHHHHhc-CHHHHHHHHhhccHHHHHhhcCC
Q 012448 173 DLGNLVAQCSSLGRVRVLSLIVKLFSV-SRSVASVIFKANLLTLLEEGVSK 222 (463)
Q Consensus 173 ~L~~~~~~~~~~vR~Rv~el~v~ia~~-S~~~~~~v~~sgl~~~ll~eL~~ 222 (463)
.+...+...|+.||--+-.++.++++. ++..+- ..|+.++.-|.+
T Consensus 67 ~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~-----~~~~e~i~~l~~ 112 (178)
T PF12717_consen 67 RILKLLVDENPEIRSLARSFFSELLKKRNPNIIY-----NNFPELISSLNN 112 (178)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHH-----HHHHHHHHHHhC
Confidence 334477889999999999999999998 555542 466666666655
No 86
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.50 E-value=8.4 Score=44.54 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=55.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCC-chhHHHHHHHhhccCcHHHHHHhhc-CCchHHHHHHHHHHHHHhCCCCC
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDS-DLEASCALQLLIDYEIYPLLLDCLI-NGNEEVATASMDAIKKLAGFPNG 159 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~-~~~~~~~~~~~~~~~l~~~li~~l~-d~d~~va~~A~~~L~~lak~~~~ 159 (463)
..++-.-++.|.=-.|.=|||-+++...-. .+ ..++. +++.++.+|+. |.++.|.-.|+-+|.-+-.+.+-
T Consensus 464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d-~~~l~------~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 464 VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD-PNNLS------EALELTHNCLLNDNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC-hHHHH------HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence 666777788999999999999999987322 11 12122 46888999999 99999999999999988766653
Q ss_pred c
Q 012448 160 I 160 (463)
Q Consensus 160 l 160 (463)
.
T Consensus 537 ~ 537 (1010)
T KOG1991|consen 537 A 537 (1010)
T ss_pred h
Confidence 3
No 87
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.43 E-value=9 Score=39.56 Aligned_cols=234 Identities=15% Similarity=0.126 Sum_probs=146.1
Q ss_pred HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448 118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF 197 (463)
Q Consensus 118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia 197 (463)
+++.+.+.+++..++.+|..-+-+..+.+..+...+.+...|- |.+.. +-.+.
T Consensus 68 La~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~-------------------------~~~p~--v~yl~ 120 (335)
T PF08569_consen 68 LAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGS-------------------------RSPPT--VDYLE 120 (335)
T ss_dssp HHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTT-------------------------B--HH--HHHHH
T ss_pred HHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCC-------------------------CCCch--HHHHH
Confidence 5666677799999999999999999999988888777665321 00000 00111
Q ss_pred hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhh
Q 012448 198 SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIM 277 (463)
Q Consensus 198 ~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ail 277 (463)
.+- -.++..++...++ .|+ -++|=+||+|..+.+..++++.....+.++.+++....-|--. =|.-
T Consensus 121 ~~~---------peil~~L~~gy~~-~di--al~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdias--daf~ 186 (335)
T PF08569_consen 121 RHR---------PEILDILLRGYEN-PDI--ALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIAS--DAFS 186 (335)
T ss_dssp T-----------THHHHHHHHGGGS-TTT--HHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHH--HHHH
T ss_pred hCC---------HHHHHHHHHHhcC-ccc--cchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHH--HHHH
Confidence 121 2577788888888 887 7899999999999999999999999999999998865422210 0111
Q ss_pred Hhhhhccccccch-hcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhh--cCchhHHHHHHHH
Q 012448 278 ISGRLLSKDDSHM-FIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLL--CLPPAARHVIDAA 354 (463)
Q Consensus 278 i~g~i~~f~~~~~-~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~--~~~~~~~~~l~~~ 354 (463)
+.--++. .++ ...+-+.++|-.|+...-.++++++-..+--++--||.|=.......++.+ .++..++-+|...
T Consensus 187 t~~~llt---~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL 263 (335)
T PF08569_consen 187 TFKELLT---RHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLL 263 (335)
T ss_dssp HHHHHHH---SSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHh
Confidence 1111111 010 011114566888888555788999999999999999998877777666654 2233444443332
Q ss_pred HhhccchhhHhHHhhhHHHhcCCC--chhhhhhhhhHHHHHHHHH
Q 012448 355 FDRQGHGKQLAALHGLANIAGKTR--SEDKIILNADAEESLRHLI 397 (463)
Q Consensus 355 ~~~~~~~~k~r~L~al~~Il~~~r--~~~~~il~~~~e~~l~~~~ 397 (463)
.+. +...|.-|.|-+..+..-++ +|...|+-..-|. |.+..
T Consensus 264 ~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~k-Ll~fl 306 (335)
T PF08569_consen 264 RDK-SKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREK-LLRFL 306 (335)
T ss_dssp T-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHH-HHHHH
T ss_pred cCc-chhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HHHHH
Confidence 221 11238899999998777653 2355555444444 54443
No 88
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=93.40 E-value=0.35 Score=41.00 Aligned_cols=79 Identities=22% Similarity=0.127 Sum_probs=61.9
Q ss_pred chhHHHHHHHHHHHHhcCHHH-HHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHH
Q 012448 183 SLGRVRVLSLIVKLFSVSRSV-ASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSL 261 (463)
Q Consensus 183 ~~vR~Rv~el~v~ia~~S~~~-~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~ 261 (463)
+.+|+|+++=+-.=..|.--. -+.+.+.++|..++.-+.. +++..+-.+++++..+++++.|.+++..-|....|.++
T Consensus 1 eEIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf-~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~kl 79 (98)
T PF14726_consen 1 EEIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNF-PPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKL 79 (98)
T ss_pred ChHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCC-CCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHH
Confidence 368899887554333333222 2333577899999999999 99999999999999999999999999999999887655
Q ss_pred h
Q 012448 262 I 262 (463)
Q Consensus 262 i 262 (463)
=
T Consensus 80 r 80 (98)
T PF14726_consen 80 R 80 (98)
T ss_pred H
Confidence 4
No 89
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.27 E-value=0.71 Score=51.57 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=116.5
Q ss_pred hHHHHHHHhcCC--------hHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHH
Q 012448 29 DAAAKKFLDRFP--------LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLA 100 (463)
Q Consensus 29 ~~~~~~~~~~~~--------l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~La 100 (463)
-+.++.++.... .|.++.|.++.| =++++.+-..|... +..-+..+--....++..-+.++|.+|.+|
T Consensus 31 ~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~d--lelKKlvyLYl~nY--a~~~P~~a~~avnt~~kD~~d~np~iR~lA 106 (734)
T KOG1061|consen 31 KDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRD--LELKKLVYLYLMNY--AKGKPDLAILAVNTFLKDCEDPNPLIRALA 106 (734)
T ss_pred HHHHHHHHhcCccCcchHhhhHHHHhhcccCC--chHHHHHHHHHHHh--hccCchHHHhhhhhhhccCCCCCHHHHHHH
Confidence 456666666655 467888888876 45666666677776 444344444568899999999999999999
Q ss_pred HHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhc
Q 012448 101 CKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQ 180 (463)
Q Consensus 101 l~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~ 180 (463)
++..+++- . .. +.+. +...+..|+.|.+.-+.+.|.-...++-.-.+ +...+.+.++ .|+.++..
T Consensus 107 lrtm~~l~--v---~~-i~ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~--~~~~~~gl~~--~L~~ll~D 171 (734)
T KOG1061|consen 107 LRTMGCLR--V---DK-ITEY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP--DLVEDSGLVD--ALKDLLSD 171 (734)
T ss_pred hhceeeEe--e---hH-HHHH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh--hhccccchhH--HHHHHhcC
Confidence 99998852 2 22 3333 45567789999999999999988888876654 4566888888 89988888
Q ss_pred CCchhHHHHHHHHHHHHhcCHH
Q 012448 181 CSSLGRVRVLSLIVKLFSVSRS 202 (463)
Q Consensus 181 ~~~~vR~Rv~el~v~ia~~S~~ 202 (463)
.|+.|=......+.+|...+++
T Consensus 172 ~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 172 SNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred CCchHHHHHHHHHHHHHHhCCC
Confidence 8889999999999999888864
No 90
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=93.05 E-value=0.22 Score=34.65 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=35.2
Q ss_pred HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhC
Q 012448 118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAG 155 (463)
Q Consensus 118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak 155 (463)
-.+.+++.|.+|.++.+|.+++..+.+.|..+|..|++
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 56788899999999999999999999999999999874
No 91
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.80 E-value=4.2 Score=45.78 Aligned_cols=198 Identities=16% Similarity=0.203 Sum_probs=134.8
Q ss_pred HHHHhcCChHHHHH-----ccccCCCCcchHHHHHHHHHHHhccccccchhhch---HHHHHHhhcCCCHHHHHHHHHHH
Q 012448 33 KKFLDRFPLSVILN-----TLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHY---MPFVQVGLTADSHSVKRLACKTV 104 (463)
Q Consensus 33 ~~~~~~~~l~~L~~-----~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~---~~~l~~gL~h~~~~Vr~Lal~~l 104 (463)
..++++.++|.|+- +|-++| .+.++..-..++.+=++.....+.+.. -+.+..-|+|||.-||=.+++=+
T Consensus 46 ~~mlnGe~~p~Llm~IiRfvlps~~--~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFL 123 (948)
T KOG1058|consen 46 ALMLNGEDLPSLLMTIIRFVLPSRN--HELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFL 123 (948)
T ss_pred HHHHcCCCchHHHHHHhheeeccCc--hHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhh
Confidence 34567788888774 566666 777888777787774444434555543 67788899999999999999999
Q ss_pred HHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhh-HhhcCCc
Q 012448 105 TCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGN-LVAQCSS 183 (463)
Q Consensus 105 ~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~-~~~~~~~ 183 (463)
.++ +. .+ +.+ .++|.|-.|+-.+..-|.+-|+-++-.|-+... +.+-|++-+ +.. ++..+|.
T Consensus 124 ckL--kE---~E-Lle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~--~L~pDapeL----i~~fL~~e~Dp 186 (948)
T KOG1058|consen 124 CKL--KE---PE-LLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE--HLIPDAPEL----IESFLLTEQDP 186 (948)
T ss_pred hhc--Cc---HH-Hhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh--hhcCChHHH----HHHHHHhccCc
Confidence 985 22 33 332 489999999999999999999999988877632 222222211 111 3356788
Q ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhh---cCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHH
Q 012448 184 LGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEG---VSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCS 260 (463)
Q Consensus 184 ~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~e---L~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~ 260 (463)
..|+.+ ++.+.-..+|.+ +.++..+ +.+ =+..+|+-.+|+++..+..+-+ .+...++-|++
T Consensus 187 sCkRNA---Fi~L~~~D~ErA--------l~Yl~~~idqi~~-~~~~LqlViVE~Irkv~~~~p~----~~~~~i~~i~~ 250 (948)
T KOG1058|consen 187 SCKRNA---FLMLFTTDPERA--------LNYLLSNIDQIPS-FNDSLQLVIVELIRKVCLANPA----EKARYIRCIYN 250 (948)
T ss_pred hhHHHH---HHHHHhcCHHHH--------HHHHHhhHhhccC-ccHHHHHHHHHHHHHHHhcCHH----HhhHHHHHHHH
Confidence 888875 555666666653 3333434 444 5678899999999999993332 23344566777
Q ss_pred Hhccc
Q 012448 261 LIGNS 265 (463)
Q Consensus 261 ~i~~~ 265 (463)
.+...
T Consensus 251 lL~st 255 (948)
T KOG1058|consen 251 LLSST 255 (948)
T ss_pred HHhcC
Confidence 76654
No 92
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.62 E-value=27 Score=41.37 Aligned_cols=348 Identities=18% Similarity=0.187 Sum_probs=180.9
Q ss_pred hHHHHHHHHHHHhccc--cccchhhc---hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCC---chhHHHHHHHh-hcc-C
Q 012448 57 LEDTLVVCLERIFKTK--YGASLIPH---YMPFVQVGLTADSHSVKRLACKTVTCLLEDS---DLEASCALQLL-IDY-E 126 (463)
Q Consensus 57 ~~~~~~~vL~~il~~~--~~~~l~~~---~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~---~~~~~~~~~~~-~~~-~ 126 (463)
..++++.=|=++|... +|..+... ..+-+...+.. .+..|.-.|..+..+++.+ ....+ ..+.+ .++ +
T Consensus 490 ~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~-~~elr~~Ic~sL~~Lv~~n~~~~~a~e-~~e~~s~~Akn 567 (1176)
T KOG1248|consen 490 LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLK-RPELRETICNSLRMLVEQNKPSSDAAE-NKEVLSNDAKN 567 (1176)
T ss_pred HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhc-chHhHHHHHHHHHHHHHcCCCcchHHH-HHHHHhhhhhH
Confidence 4455666555555444 23333332 24444444443 4499999999999999875 22222 22222 121 2
Q ss_pred cHHHHHHhhcC------CchHHHHHHHHHHH-HHhCCCCCccccccCCCcchhhHhhHh----h----cCCchhHHHHHH
Q 012448 127 IYPLLLDCLIN------GNEEVATASMDAIK-KLAGFPNGIDIIFPADNKAATDLGNLV----A----QCSSLGRVRVLS 191 (463)
Q Consensus 127 l~~~li~~l~d------~d~~va~~A~~~L~-~lak~~~~l~~l~~~~~~~~~~L~~~~----~----~~~~~vR~Rv~e 191 (463)
.+|-+.+.=.. +...+...-+.++. ..-. +.+.++.. .|.+.+ . ...+....++++
T Consensus 568 fL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~-------~t~~dv~~--~l~~s~~e~as~~~~s~~~~~~~slLd 638 (1176)
T KOG1248|consen 568 FLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFT-------VTPTDVVG--SLKDSAGELASDLDESVASFKTLSLLD 638 (1176)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhh-------cccHHHHH--HHHHHHHhHhccchhhhhhHHHHHHHH
Confidence 44444432211 22233333333322 1111 11222322 333221 1 234556788899
Q ss_pred HHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhh
Q 012448 192 LIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETIL 271 (463)
Q Consensus 192 l~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~ 271 (463)
+++-++..-++. . + +++| .+..+..+.++..+|+-+-++|.++...+.|..|..+. ++.|.+.-.|++-
T Consensus 639 l~~~~a~~~~e~-~-v--s~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~------i~~I~n~L~ds~q 707 (1176)
T KOG1248|consen 639 LLIALAPVQTES-Q-V--SKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQR------IDDIFNSLLDSFQ 707 (1176)
T ss_pred HHHhhhccccch-h-H--HHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHH------HHHHHHHHHHHHh
Confidence 998888764433 1 1 2455 55666666469999999999999999997777665543 3333333233332
Q ss_pred hhhhhhHhhhhccccccch----hcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhH
Q 012448 272 RSRAIMISGRLLSKDDSHM----FIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAA 347 (463)
Q Consensus 272 r~~aili~g~i~~f~~~~~----~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~ 347 (463)
.+...--.+++..-.-+++ +......+.+|..+ + +..+.+..-+..|+++|=.||. ....+... .+..
T Consensus 708 s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvI---L-~~Ke~n~~aR~~Af~lL~~i~~---i~~~~d~g-~e~~ 779 (1176)
T KOG1248|consen 708 SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVI---L-SLKEVNVKARRNAFALLVFIGA---IQSSLDDG-NEPA 779 (1176)
T ss_pred ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH---H-hcccccHHHHhhHHHHHHHHHH---HHhhhccc-ccch
Confidence 1111111333332111111 11011233333332 2 3378889999999999999995 22222211 1112
Q ss_pred HHHHHHHHhhccc-----hh--hHhHHhhhHHHhcCCCchhhhhhhh-hHHHHHHHHHHHHHhhCCCCChhH---HHHHH
Q 012448 348 RHVIDAAFDRQGH-----GK--QLAALHGLANIAGKTRSEDKIILNA-DAEESLRHLIYEVASRSSKLTPSG---LFLSV 416 (463)
Q Consensus 348 ~~~l~~~~~~~~~-----~~--k~r~L~al~~Il~~~r~~~~~il~~-~~e~~l~~~~ye~~~~~~~~~p~~---~~~~~ 416 (463)
...++.+..-++- .. ..+.|-+++.|+... ..++++ -.+. +..++ ..|-.+-+..-.. -++.+
T Consensus 780 ~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~----~~~ld~~~l~~-li~~V-~~~L~s~sreI~kaAI~fikv 853 (1176)
T KOG1248|consen 780 SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF----KNILDDETLEK-LISMV-CLYLASNSREIAKAAIGFIKV 853 (1176)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH----hccccHHHHHH-HHHHH-HHHHhcCCHHHHHHHHHHHHH
Confidence 4444444444442 22 333388899988843 223333 3333 66666 6665532222221 15556
Q ss_pred h-cCCHHHHHHHHH--HHHHhhcCchhHH
Q 012448 417 L-QQAAEIRLAGYR--MITGLVARPWCLM 442 (463)
Q Consensus 417 ~-qpF~elr~A~~~--~l~~l~~~~Wg~~ 442 (463)
+ +=|||...+.+. +|..+.. |-.+
T Consensus 854 lv~~~pe~~l~~~~~~LL~sll~--ls~d 880 (1176)
T KOG1248|consen 854 LVYKFPEECLSPHLEELLPSLLA--LSHD 880 (1176)
T ss_pred HHHcCCHHHHhhhHHHHHHHHHH--HHHh
Confidence 6 889999999999 8888877 7654
No 93
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=92.60 E-value=3 Score=46.06 Aligned_cols=183 Identities=13% Similarity=0.073 Sum_probs=137.0
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHH-hCCCCC
Q 012448 81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKL-AGFPNG 159 (463)
Q Consensus 81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~l-ak~~~~ 159 (463)
..+.+....-|.|..++..+|--+....+.. .. +...+.+.++...++..+-||++.|..++..+|-++ -++++-
T Consensus 378 t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV---~a-L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~ 453 (678)
T KOG1293|consen 378 TESHLMCLPPIKDHDFVAAALLCLKSFSRSV---SA-LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNL 453 (678)
T ss_pred HHHHHccccccccHHHHHHHHHHHHHHHHHH---HH-HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccH
Confidence 3566666778889999998887776655544 33 444567778888999999999999999999999888 444432
Q ss_pred ccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHH
Q 012448 160 IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYEL 239 (463)
Q Consensus 160 l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eL 239 (463)
-......+.++ .+.......+..+|.-..-++-++.=-+.+....---+.++-..+.++-+-+|.=||--|+.+++.+
T Consensus 454 kskfl~~ngId--~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 454 KSKFLRNNGID--ILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred HHHHHHcCcHH--HHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 24555667777 7777888899999998888888888778777777666778877777765548999999999999999
Q ss_pred Hh-hHHHHHHHHhc--chHHHHHHHhcccccch
Q 012448 240 AE-IQHSAEFLSRT--TLLQLLCSLIGNSATET 269 (463)
Q Consensus 240 a~-t~~g~~~L~~~--gi~~~L~~~i~~~~~dp 269 (463)
.- +.....|+.+. .+++++.-...-+...|
T Consensus 532 ~c~~~~svdfll~~~~~~ld~i~l~lk~a~~~p 564 (678)
T KOG1293|consen 532 TCNSRKSVDFLLEKFKDVLDKIDLQLKIAIGSP 564 (678)
T ss_pred hcCcHHHHHHHHHhhhHHHHHHHHHHhhccCCc
Confidence 87 77888888875 34444444433233444
No 94
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.39 E-value=13 Score=39.40 Aligned_cols=177 Identities=14% Similarity=0.068 Sum_probs=107.4
Q ss_pred cchHHHHHHHHHHHhccccccchhhchHHHHHHhh-----cCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHH
Q 012448 55 PGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGL-----TADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYP 129 (463)
Q Consensus 55 ~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL-----~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~ 129 (463)
+..+..++.+|..+......+.....+.+.+..-+ ....+..=+...|-...++-+. .. ... .++.
T Consensus 204 ~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~---~~-~~~-----~~~~ 274 (415)
T PF12460_consen 204 EFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG---HP-LAT-----ELLD 274 (415)
T ss_pred hHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC---Cc-hHH-----HHHH
Confidence 45555666666666655434443333444333333 2223333344445555555444 11 111 3455
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHhCCCCCc---------cccccCCCcc--hhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448 130 LLLDCLINGNEEVATASMDAIKKLAGFPNGI---------DIIFPADNKA--ATDLGNLVAQCSSLGRVRVLSLIVKLFS 198 (463)
Q Consensus 130 ~li~~l~d~d~~va~~A~~~L~~lak~~~~l---------~~l~~~~~~~--~~~L~~~~~~~~~~vR~Rv~el~v~ia~ 198 (463)
.++..+.++ +++..|++.+.-+....+.. +.++...++. .-.|.+.....++..|...+-.++.|-+
T Consensus 275 ~L~~lL~~~--~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~ 352 (415)
T PF12460_consen 275 KLLELLSSP--ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLK 352 (415)
T ss_pred HHHHHhCCh--hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHh
Confidence 667778774 47888999998887773321 2233333322 0033334445566789999999999999
Q ss_pred cCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhH
Q 012448 199 VSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQ 243 (463)
Q Consensus 199 ~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~ 243 (463)
+-|...=.-.=..++|.+++.|+- +|.-++.++++++..+....
T Consensus 353 ~vP~~vl~~~l~~LlPLLlqsL~~-~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 353 NVPKSVLLPELPTLLPLLLQSLSL-PDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHcC
Confidence 877554333445799999999988 99999999999999998843
No 95
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=92.30 E-value=2.4 Score=46.34 Aligned_cols=275 Identities=12% Similarity=0.041 Sum_probs=142.3
Q ss_pred cCChHHHHHccccC--CCCcc-hHHHHHHHHHHHhccccccchhhch---HHHHHHh-h-cCCCHHHHHHHHHHHHHHHh
Q 012448 38 RFPLSVILNTLQTK--PDVPG-LEDTLVVCLERIFKTKYGASLIPHY---MPFVQVG-L-TADSHSVKRLACKTVTCLLE 109 (463)
Q Consensus 38 ~~~l~~L~~~L~~~--~~~~~-~~~~~~~vL~~il~~~~~~~l~~~~---~~~l~~g-L-~h~~~~Vr~Lal~~l~~i~~ 109 (463)
+--+|.++.-+-.+ ++.|. .+.....++.-+.....|..+.+++ .-.++.| + ++++..||-.+++++..-+.
T Consensus 128 ~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~ 207 (858)
T COG5215 128 NSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM 207 (858)
T ss_pred cccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence 44455666555432 22222 1222222555555555665555443 3334443 4 35689999999999877221
Q ss_pred CCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC-CCccccccCCCcchhhHhhHhhcCCchhHHH
Q 012448 110 DSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP-NGIDIIFPADNKAATDLGNLVAQCSSLGRVR 188 (463)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~-~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~R 188 (463)
-. .++...--..+=++..++..-+.+|.++-.+|...|-+|-.-. +-++. +..+.+- ....+...++|++|+.+
T Consensus 208 fv---~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~-ymE~aL~-alt~~~mks~nd~va~q 282 (858)
T COG5215 208 FV---QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQS-YMENALA-ALTGRFMKSQNDEVAIQ 282 (858)
T ss_pred HH---HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHhcCcchHHHHH
Confidence 00 0001111112236666778889999999999999988874221 11111 1111111 13334566899999999
Q ss_pred HHHHHHHHHhcCHHHH----------------HHHHhhccHHHHHhhcCC------CCcHHHHH---hHHHHHHHHHhhH
Q 012448 189 VLSLIVKLFSVSRSVA----------------SVIFKANLLTLLEEGVSK------KNDTLETL---SILELLYELAEIQ 243 (463)
Q Consensus 189 v~el~v~ia~~S~~~~----------------~~v~~sgl~~~ll~eL~~------~~DvLv~l---nalell~eLa~t~ 243 (463)
..|.-..|+..--|.. ....-..++|.+++.|.+ .||==+.+ +|++++.++....
T Consensus 283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~ 362 (858)
T COG5215 283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK 362 (858)
T ss_pred HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH
Confidence 9998877775432221 111123577888777654 14444444 5566666665421
Q ss_pred HHHHHHHhcchHHHHHHHhcccc-cchhhhhhhhhHhhhhccccccchhcchh-hhhhhHHHHHHHhccccCCChhhhhH
Q 012448 244 HSAEFLSRTTLLQLLCSLIGNSA-TETILRSRAIMISGRLLSKDDSHMFIDES-SAKTVISAIDGRLGFLQSQDSDECES 321 (463)
Q Consensus 244 ~g~~~L~~~gi~~~L~~~i~~~~-~dpl~r~~aili~g~i~~f~~~~~~~~~~-~~k~~p~~l~~~f~~~~~~d~~~~~~ 321 (463)
.+.. +...+-..|.+.+ .+.- .+-|.+ |.++--++.- ..+.+|+.+..+.++...+---.+..
T Consensus 363 ----i~~p--Vl~FvEqni~~~~w~nre--------aavmAf-GSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~t 427 (858)
T COG5215 363 ----IMRP--VLGFVEQNIRSESWANRE--------AAVMAF-GSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKST 427 (858)
T ss_pred ----hHHH--HHHHHHHhccCchhhhHH--------HHHHHh-hhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhH
Confidence 1111 3333323333211 2221 233333 3333112111 24445666666654444444567899
Q ss_pred HHHHHHhhcCC
Q 012448 322 ALEALGQIGSS 332 (463)
Q Consensus 322 A~dtlG~Igss 332 (463)
+.|++|.|+.+
T Consensus 428 tAwc~g~iad~ 438 (858)
T COG5215 428 TAWCFGAIADH 438 (858)
T ss_pred HHHHHHHHHHH
Confidence 99999999854
No 96
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.26 E-value=0.17 Score=33.28 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=26.7
Q ss_pred cHHHHHHhhcCCchHHHHHHHHHHHHHhCC
Q 012448 127 IYPLLLDCLINGNEEVATASMDAIKKLAGF 156 (463)
Q Consensus 127 l~~~li~~l~d~d~~va~~A~~~L~~lak~ 156 (463)
++|.++.+++|++..|...|+.+|.+|+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999865
No 97
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.02 E-value=19 Score=39.65 Aligned_cols=132 Identities=15% Similarity=0.144 Sum_probs=88.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-ccc
Q 012448 85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DII 163 (463)
Q Consensus 85 l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l 163 (463)
+..|-+. ++.+|+|++.-|.+-..+- +. +.+ ..+-.+++.+-|+|..|-..|++.|..++|..+.. ..|
T Consensus 28 il~~~kg-~~k~K~Laaq~I~kffk~F---P~-l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv 97 (556)
T PF05918_consen 28 ILDGVKG-SPKEKRLAAQFIPKFFKHF---PD-LQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV 97 (556)
T ss_dssp HHHGGGS--HHHHHHHHHHHHHHHCC----GG-GHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH
T ss_pred HHHHccC-CHHHHHHHHHHHHHHHhhC---hh-hHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH
Confidence 3445554 7999999999999999877 44 433 35566788899999999999999999999987632 332
Q ss_pred ccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHH
Q 012448 164 FPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYEL 239 (463)
Q Consensus 164 ~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eL 239 (463)
. + .|.+++...+....--|-..++++.+..+... =+|+|+.++.- .+ .|..+|-.++..|.+=
T Consensus 98 a-----D--vL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~t----L~~lf~~i~~~-~~-~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 98 A-----D--VLVQLLQTDDPVELDAVKNSLMSLLKQDPKGT----LTGLFSQIESS-KS-GDEQVRERALKFLREK 160 (556)
T ss_dssp H-----H--HHHHHTT---HHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHH----H-S-HHHHHHHHHHHHHH
T ss_pred H-----H--HHHHHHhcccHHHHHHHHHHHHHHHhcCcHHH----HHHHHHHHHhc-cc-CchHHHHHHHHHHHHH
Confidence 2 3 56656666677888888999999999887552 24788887743 24 6778999999988653
No 98
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=91.97 E-value=4.7 Score=41.38 Aligned_cols=163 Identities=15% Similarity=0.166 Sum_probs=116.8
Q ss_pred ChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccc-cccchhhch-------HHHHHHhhcCCC------
Q 012448 28 NDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTK-YGASLIPHY-------MPFVQVGLTADS------ 93 (463)
Q Consensus 28 s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~-~~~~l~~~~-------~~~l~~gL~h~~------ 93 (463)
-...++.++++. +..|+.+|+... +.....+--.|..+ .. .++..+..+ ...+.+-+++..
T Consensus 46 g~~l~~~iL~~~-~k~lyr~L~~~~--~~~~~~~LrLL~~i--v~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~ 120 (330)
T PF11707_consen 46 GLELIRSILQNH-LKLLYRSLSSSK--PSLTNPALRLLTAI--VSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKD 120 (330)
T ss_pred HHHHHHHHHHHH-HHHHHHHhCcCc--HHHHHHHHHHHHHH--HccCCHHHHHHHHHhcCCchhhHHHHhcccccccccc
Confidence 456689999887 999999999865 33334333366666 33 444444333 223333332221
Q ss_pred -------HHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHH-HhCCC---CCcc-
Q 012448 94 -------HSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKK-LAGFP---NGID- 161 (463)
Q Consensus 94 -------~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~-lak~~---~~l~- 161 (463)
+.||...++=+...+.+.+. .. ..+++.+.+++..+..-|.+.+.++-...+++|.+ +.+.+ +..+
T Consensus 121 ~~~~~~~~siR~~fI~F~Lsfl~~~~~-~~-~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~ 198 (330)
T PF11707_consen 121 SESSKSKPSIRTNFIRFWLSFLSSGDP-EL-KRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKC 198 (330)
T ss_pred ccccccCcCHHHHHHHHHHHHHccCCH-HH-HHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhh
Confidence 39999999999999987632 44 67799999999999999999999999999999884 55444 2332
Q ss_pred ccccCCCcchhhHhhHhhcCCc----hhHHHHHHHHHHHHhc
Q 012448 162 IIFPADNKAATDLGNLVAQCSS----LGRVRVLSLIVKLFSV 199 (463)
Q Consensus 162 ~l~~~~~~~~~~L~~~~~~~~~----~vR~Rv~el~v~ia~~ 199 (463)
.+|++.++. .|..+....++ .++--|++++..++..
T Consensus 199 ~~fn~~~L~--~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 199 KLFNEWTLS--QLASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred hhcCHHHHH--HHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 677777777 77776677777 8999999999999954
No 99
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.86 E-value=0.55 Score=32.61 Aligned_cols=40 Identities=20% Similarity=0.013 Sum_probs=36.9
Q ss_pred CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHH
Q 012448 200 SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELA 240 (463)
Q Consensus 200 S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa 240 (463)
|++.-..+++.|.++.++..|++ +|.-++.+|+-.|..|+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKS-PDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTS-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcC-CCHHHHHHHHHHHHHHh
Confidence 56778899999999999999998 99999999999999886
No 100
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.65 E-value=3 Score=50.05 Aligned_cols=164 Identities=11% Similarity=0.140 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC
Q 012448 58 EDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN 137 (463)
Q Consensus 58 ~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d 137 (463)
.+.++.+...+.....-......|...|..+|.+|.+.||.=|++.+..+++-+ .. .+.++++-..|...+.|
T Consensus 794 ~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~D---p~----vL~~~dvq~~Vh~R~~D 866 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEAD---PS----VLSRPDVQEAVHGRLND 866 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcC---hH----hhcCHHHHHHHHHhhcc
Confidence 345555555554444444455568999999999999999999999999999876 32 45666777888899999
Q ss_pred CchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHH
Q 012448 138 GNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLL 216 (463)
Q Consensus 138 ~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~l 216 (463)
.-.+|..+|.+.+.+.--..+.+ ... .+ .+.+.+...+-.||-||.-++-+|+-..|+.-..+ .+.-++
T Consensus 867 ssasVREAaldLvGrfvl~~~e~~~qy-----Y~--~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~---~~cakm 936 (1692)
T KOG1020|consen 867 SSASVREAALDLVGRFVLSIPELIFQY-----YD--QIIERILDTGVSVRKRVIKILRDICEETPDFSKIV---DMCAKM 936 (1692)
T ss_pred chhHHHHHHHHHHhhhhhccHHHHHHH-----HH--HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH---HHHHHH
Confidence 99999999999998763222211 212 22 55567778889999999999999998877654433 466677
Q ss_pred HhhcCCCCcHHHHHhHHHHHHHH
Q 012448 217 EEGVSKKNDTLETLSILELLYEL 239 (463)
Q Consensus 217 l~eL~~~~DvLv~lnalell~eL 239 (463)
+....| +--=++.=+.|.+.++
T Consensus 937 lrRv~D-EEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 937 LRRVND-EEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHhcc-chhHHHHHHHHHHHHH
Confidence 777766 3222444455555443
No 101
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=91.45 E-value=9.4 Score=45.16 Aligned_cols=225 Identities=16% Similarity=0.222 Sum_probs=131.0
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC--
Q 012448 82 MPFVQVGLTAD-SHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN-- 158 (463)
Q Consensus 82 ~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~-- 158 (463)
...+-.|+.|= ...-|.-|+.-+..+....+++.. .| .++|.++.|+.|++..|-..|+.+|.++.....
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~------LD-RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~ 496 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK------LD-RVLPYFVHLLMDSEADVRATALETLTELLALVRDI 496 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH------Hh-hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC
Confidence 44444444443 334455555555555544432222 22 589999999999999999999999988854432
Q ss_pred --CccccccCCCcchhhHhhHhhc-CCchhHHHHHHHHHHHHhcCHHHHHHHH---hhccH-------------------
Q 012448 159 --GIDIIFPADNKAATDLGNLVAQ-CSSLGRVRVLSLIVKLFSVSRSVASVIF---KANLL------------------- 213 (463)
Q Consensus 159 --~l~~l~~~~~~~~~~L~~~~~~-~~~~vR~Rv~el~v~ia~~S~~~~~~v~---~sgl~------------------- 213 (463)
.=..||..=.++ .|+.++.. ....+|.-.-+++.++|+.-..-++... ..|.+
T Consensus 497 ~~~daniF~eYlfP--~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~ 574 (1431)
T KOG1240|consen 497 PPSDANIFPEYLFP--HLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQA 574 (1431)
T ss_pred CcccchhhHhhhhh--hhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHH
Confidence 224677777788 88855544 4566677667788888876332222211 11111
Q ss_pred ------HHHHhhcCCCCcHHHHHhHHHHHHHHHh--hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccc
Q 012448 214 ------TLLEEGVSKKNDTLETLSILELLYELAE--IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSK 285 (463)
Q Consensus 214 ------~~ll~eL~~~~DvLv~lnalell~eLa~--t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f 285 (463)
.....-|.| ++..||..-+|=|.+|+. .+.++ +-=++..|+.++++- |+-.| ..|+-.-
T Consensus 575 L~~~V~~~v~sLlsd-~~~~Vkr~Lle~i~~LC~FFGk~ks----ND~iLshLiTfLNDk--Dw~LR------~aFfdsI 641 (1431)
T KOG1240|consen 575 LHHTVEQMVSSLLSD-SPPIVKRALLESIIPLCVFFGKEKS----NDVILSHLITFLNDK--DWRLR------GAFFDSI 641 (1431)
T ss_pred HHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHhhhccc----ccchHHHHHHHhcCc--cHHHH------HHHHhhc
Confidence 122223556 677777777777777766 33222 223566777777763 66544 3333221
Q ss_pred cccchhcc-hhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448 286 DDSHMFID-ESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS 331 (463)
Q Consensus 286 ~~~~~~~~-~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs 331 (463)
.++--|++ ++.+.+..+.++. -+..+++..+..|+.+|..+..
T Consensus 642 ~gvsi~VG~rs~seyllPLl~Q---~ltD~EE~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 642 VGVSIFVGWRSVSEYLLPLLQQ---GLTDGEEAVIVSALGSLSILIK 685 (1431)
T ss_pred cceEEEEeeeeHHHHHHHHHHH---hccCcchhhHHHHHHHHHHHHH
Confidence 12222332 2234434444443 3577888888888888877765
No 102
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.27 E-value=0.46 Score=44.73 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=62.3
Q ss_pred chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhC
Q 012448 76 SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAG 155 (463)
Q Consensus 76 ~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak 155 (463)
.+.|.|.+.+.....++++.||.+|+.-+.-+++.+--.+. ..+|.+|....||+..++..|...++.+.+
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~---------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK---------QCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH---------HHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999998876521122 489999999999999999999999999954
Q ss_pred CC
Q 012448 156 FP 157 (463)
Q Consensus 156 ~~ 157 (463)
-.
T Consensus 75 K~ 76 (187)
T PF12830_consen 75 KH 76 (187)
T ss_pred Hh
Confidence 43
No 103
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.17 E-value=5.4 Score=40.18 Aligned_cols=194 Identities=18% Similarity=0.157 Sum_probs=125.6
Q ss_pred HHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhC
Q 012448 31 AAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLED 110 (463)
Q Consensus 31 ~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~ 110 (463)
..+.+++++.+|. +++.+ +..++.+..||.-+ .+-....+.++...+..+++..++.||..+++.+..++-.
T Consensus 23 ~l~~ll~~lI~P~----v~~~~--~~vR~~al~cLGl~--~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~ 94 (298)
T PF12719_consen 23 SLESLLDSLILPA----VQSSD--PAVRELALKCLGLC--CLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLT 94 (298)
T ss_pred hHHHHHHHHHHHH----hcCCC--HHHHHHHHHHHHHH--HHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3356666666654 44444 68889999999988 7777788889999999999999999999999999999863
Q ss_pred CchhHHHHHHHh-------hccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcccccc-CCCcchhhHhhHhh---
Q 012448 111 SDLEASCALQLL-------IDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFP-ADNKAATDLGNLVA--- 179 (463)
Q Consensus 111 ~~~~~~~~~~~~-------~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~-~~~~~~~~L~~~~~--- 179 (463)
-+ .. ..... ....++..+...+.+.+.++...|+..+.++.-+. .+.+ +.++. .|--.--
T Consensus 95 ~g--~~-~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~----~i~~~~~vL~--~Lll~yF~p~ 165 (298)
T PF12719_consen 95 HG--ID-IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG----RISDPPKVLS--RLLLLYFNPS 165 (298)
T ss_pred cC--ch-hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC----CCCcHHHHHH--HHHHHHcCcc
Confidence 32 22 22222 23468888889999999999999999999986443 2444 45554 3321111
Q ss_pred cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCC-C--cHHHHHhHHHHHHHHHh
Q 012448 180 QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKK-N--DTLETLSILELLYELAE 241 (463)
Q Consensus 180 ~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~-~--DvLv~lnalell~eLa~ 241 (463)
..+..-=++++..+-.....|...-+.+....+++.+-.-.+.. + +.+..++.-.+...++.
T Consensus 166 t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~ 230 (298)
T PF12719_consen 166 TEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVD 230 (298)
T ss_pred cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHH
Confidence 11222234566666666666665556666666666655544441 1 34444444444444444
No 104
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=90.91 E-value=0.73 Score=41.54 Aligned_cols=106 Identities=12% Similarity=0.104 Sum_probs=80.2
Q ss_pred hHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---chhh-chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHH
Q 012448 41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---SLIP-HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS 116 (463)
Q Consensus 41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~l~~-~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~ 116 (463)
|..|++-.++.. +.+-++++.+=|... +-+|- .+.+ ++.+.++.+|+++|..+++.++-.++.+--. ..
T Consensus 18 lq~LV~efq~tt-~~eakeqv~ANLANF--AYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d----~~ 90 (173)
T KOG4646|consen 18 LQHLVDEFQTTT-NIEAKEQVTANLANF--AYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD----KT 90 (173)
T ss_pred HHHHHHHHHHhc-cHHHHHHHHHHHHhh--ccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC----hH
Confidence 345555555543 256677888777766 55553 2322 5799999999999999999999999886432 23
Q ss_pred HHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 012448 117 CALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLA 154 (463)
Q Consensus 117 ~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~la 154 (463)
-+..+..++=+|++|.|+.+|...+-..|+-++.-+.
T Consensus 91 -n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 91 -NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLE 127 (173)
T ss_pred -HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhc
Confidence 5677788899999999999999999999999988775
No 105
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.48 E-value=37 Score=38.79 Aligned_cols=402 Identities=14% Similarity=0.148 Sum_probs=235.1
Q ss_pred HHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc--------------hhh------chHHHHHHhhcCC
Q 012448 33 KKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS--------------LIP------HYMPFVQVGLTAD 92 (463)
Q Consensus 33 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~--------------l~~------~~~~~l~~gL~h~ 92 (463)
|.-|....+++|++.|++..++++..+-+-+.+-.++..-+.++ ++. .....+...++|+
T Consensus 55 R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~ 134 (970)
T KOG0946|consen 55 REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF 134 (970)
T ss_pred HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh
Confidence 44566677889999999876666666655555555544332111 111 1367788899999
Q ss_pred CHHHHHHHHHHHHHHHhCCchhHHHHHH-HhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccc-cCCCcc
Q 012448 93 SHSVKRLACKTVTCLLEDSDLEASCALQ-LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIF-PADNKA 170 (463)
Q Consensus 93 ~~~Vr~Lal~~l~~i~~~~~~~~~~~~~-~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~-~~~~~~ 170 (463)
|=.||..++.-+..++.+-.. . +.+ +++-|--+.-++..|.|...-+...|+-.|..+.+..+.++.++ =.+.+.
T Consensus 135 DF~VR~~aIqLlsalls~r~~--e-~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFe 211 (970)
T KOG0946|consen 135 DFHVRLYAIQLLSALLSCRPT--E-LQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFE 211 (970)
T ss_pred chhhhhHHHHHHHHHHhcCCH--H-HHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 999999999999999987732 2 444 55777788889999999999999999999999999998885332 345554
Q ss_pred hhhHhhHhhcC----CchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhc---CCCCc------HHHHH---hHHH
Q 012448 171 ATDLGNLVAQC----SSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGV---SKKND------TLETL---SILE 234 (463)
Q Consensus 171 ~~~L~~~~~~~----~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL---~~~~D------vLv~l---nale 234 (463)
.|-.++... ..+|---.+-++-++-|-....-++..|.+.++++..-| .-.+| .---- -++.
T Consensus 212 --rLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lq 289 (970)
T KOG0946|consen 212 --RLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQ 289 (970)
T ss_pred --HHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHH
Confidence 444344322 336777777788899999888889999999999988432 22122 22222 3455
Q ss_pred HHHHHHh------hHHHH-HHHHhcchHHHHHHHhcccccchh-hhhhhhhHhhhhccccccc---hh--cchhhhh-hh
Q 012448 235 LLYELAE------IQHSA-EFLSRTTLLQLLCSLIGNSATETI-LRSRAIMISGRLLSKDDSH---MF--IDESSAK-TV 300 (463)
Q Consensus 235 ll~eLa~------t~~g~-~~L~~~gi~~~L~~~i~~~~~dpl-~r~~aili~g~i~~f~~~~---~~--~~~~~~k-~~ 300 (463)
+++-++. ..|-+ +-|.+.++++.|+..+-... =|. +++-++....-+.- |+-. .| ++-|-.+ .-
T Consensus 290 ivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~-vp~dIltesiitvAevVR-gn~~nQ~~F~~v~~p~~~~Pr 367 (970)
T KOG0946|consen 290 IVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG-VPADILTESIITVAEVVR-GNARNQDEFADVTAPSIPNPR 367 (970)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC-CcHhHHHHHHHHHHHHHH-hchHHHHHHhhccCCCCCCCc
Confidence 5666654 23444 68889999999999887654 332 34445555444432 1110 11 1011111 12
Q ss_pred HHHHHHHhccccC-CChhhhhHHHHHHHhhcC-CHHHHHHHhhcCchhHHHHHHHHHhhccchh--------hHhHHhhh
Q 012448 301 ISAIDGRLGFLQS-QDSDECESALEALGQIGS-SIQGATLLLLCLPPAARHVIDAAFDRQGHGK--------QLAALHGL 370 (463)
Q Consensus 301 p~~l~~~f~~~~~-~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~--------k~r~L~al 370 (463)
|..+--+..|+.+ +-...+.+.+-.+-+.=. +.+|..-+.+ ..+..+.+..+++- -+-..+++
T Consensus 368 ~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~-------tllp~~~nst~Nsl~ag~l~~~~l~s~d~~ 440 (970)
T KOG0946|consen 368 PSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLK-------TLLPSSTNSTSNSLSAGQLLLVGLSSTDSL 440 (970)
T ss_pred cchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHH-------HHhhhhccccccchhhhhHHHHhhccchHH
Confidence 2222212233333 445666666666655444 6667543332 22222222222111 11223444
Q ss_pred HHHhcCCC-----chhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-------cCCHHHHHHHHHHHH-HhhcC
Q 012448 371 ANIAGKTR-----SEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-------QQAAEIRLAGYRMIT-GLVAR 437 (463)
Q Consensus 371 ~~Il~~~r-----~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-------qpF~elr~A~~~~l~-~l~~~ 437 (463)
.+-|+..- .++ +...|+ |+++. .+-..+.+|.+++..+| .-=+.-|..=|-+|- -+...
T Consensus 441 ~nwFt~v~lmh~l~dn----~~~kEe-LlrV~---l~~~~gn~p~tlL~~~ct~~~~~~t~r~qt~vglLmlL~~WL~~c 512 (970)
T KOG0946|consen 441 DNWFTAVILMHLLQDN----DQLKEE-LLRVP---LAVDTGNDPDTLLFQQCTNLKLQGTSRHQTRVGLLMLLITWLYGC 512 (970)
T ss_pred HHHHHHHHHHHHHHHh----HHHHHH-HHhhh---hcccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCC
Confidence 44443110 010 223444 65555 33445566766554422 112333333333333 34455
Q ss_pred chhHHHhhhccchhHhhcC
Q 012448 438 PWCLMELCSKQEIINTVTD 456 (463)
Q Consensus 438 ~Wg~~~i~~~~gfie~lld 456 (463)
|=.+..+.+..+.+-|++.
T Consensus 513 p~AV~dFLs~~s~iq~Ltt 531 (970)
T KOG0946|consen 513 PDAVKDFLSESSIIQYLTT 531 (970)
T ss_pred cHHHHHHHccccHHHHHHH
Confidence 7789999999999999874
No 106
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=90.32 E-value=2 Score=46.77 Aligned_cols=186 Identities=14% Similarity=0.060 Sum_probs=117.6
Q ss_pred CChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHH-------HhhcCCCHHHHHHHHHHHHHHHhCC
Q 012448 39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQ-------VGLTADSHSVKRLACKTVTCLLEDS 111 (463)
Q Consensus 39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~-------~gL~h~~~~Vr~Lal~~l~~i~~~~ 111 (463)
..+++++-+-.+.+ ....+.+...|+|+-.......+.+++..... .+-..-++.+|.-.+.-+.|-..
T Consensus 237 ~~~~~~liAsad~~--~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~-- 312 (501)
T PF13001_consen 237 ERFPPLLIASADSN--SSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI-- 312 (501)
T ss_pred hHHhheeeEEeCCc--chHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH--
Confidence 34444444444433 45666777799999655444445444433333 23335688999888888887221
Q ss_pred chhHHHHHHHhhccCcHHHHHHhhcCC--chHHHHHHHHHH---HHHhCCCC-CccccccCCCcchhhHhhHh-------
Q 012448 112 DLEASCALQLLIDYEIYPLLLDCLING--NEEVATASMDAI---KKLAGFPN-GIDIIFPADNKAATDLGNLV------- 178 (463)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~li~~l~d~--d~~va~~A~~~L---~~lak~~~-~l~~l~~~~~~~~~~L~~~~------- 178 (463)
.+-.-+.++..+-.|+..+ ...+...++..+ ....++-+ .+-..+.+.... .+-+.+
T Consensus 313 --------Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~--~g~p~~~~~~~~~ 382 (501)
T PF13001_consen 313 --------AATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILS--QGWPLIQDSSSQS 382 (501)
T ss_pred --------HHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHh--cCccccccccccC
Confidence 1112235666666788887 566777777777 44444432 110011111111 111122
Q ss_pred -hcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 179 -AQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 179 -~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
...+...|.+.|+.+..|++..+..+. .+-+++.++...|++ ++.=++.+.-|.|..|+.
T Consensus 383 ~~~~~~~lR~~aYe~lG~L~~~~p~l~~--~d~~li~~LF~sL~~-~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 383 NSSEDIELRSLAYETLGLLAKRAPSLFS--KDLSLIEFLFDSLED-ESPEVRVSIQEALSSLAP 443 (501)
T ss_pred CCcccHHHHHHHHHHHHHHHccCccccc--ccHHHHHHHHHHhhC-cchHHHHHHHHHHHHHHH
Confidence 246788999999999999999998873 234788999999988 899999999999999988
No 107
>PF05536 Neurochondrin: Neurochondrin
Probab=90.30 E-value=4.7 Score=44.39 Aligned_cols=189 Identities=16% Similarity=0.235 Sum_probs=119.2
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc-----hhhch-HHHHHHhhcC-------CCHHHHHHHHHHHHH
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS-----LIPHY-MPFVQVGLTA-------DSHSVKRLACKTVTC 106 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-----l~~~~-~~~l~~gL~h-------~~~~Vr~Lal~~l~~ 106 (463)
.+......|+.++|+ .+=..-..+.+++++.+-.. +...+ ..|+.+-|.. +...-+.|++.-+..
T Consensus 6 ~l~~c~~lL~~~~D~--~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 6 SLEKCLSLLKSADDT--ERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHHHhccCCcH--HHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 355666677766532 12222226777766443222 12222 6777787777 667788899888887
Q ss_pred HHhCCchhHHHHHHHhhccCcHHHHHHhhcCCch-HHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchh
Q 012448 107 LLEDSDLEASCALQLLIDYEIYPLLLDCLINGNE-EVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLG 185 (463)
Q Consensus 107 i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~-~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~v 185 (463)
..... . ++.--.=-+-+|.++.++...+. ++...+...|..++.+++|.+.+...+.++ .|-+.+.+ ++..
T Consensus 84 f~~~~----~-~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~--~L~ei~~~-~~~~ 155 (543)
T PF05536_consen 84 FCRDP----E-LASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVP--ALCEIIPN-QSFQ 155 (543)
T ss_pred HcCCh----h-hhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHH--HHHHHHHh-Ccch
Confidence 65522 2 22111111468999999988887 999999999999999999999999999998 88866554 5566
Q ss_pred HHHHHHHHHHHHhcCH-HHHH----HHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 186 RVRVLSLIVKLFSVSR-SVAS----VIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 186 R~Rv~el~v~ia~~S~-~~~~----~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
+=.++.++..+..... +..+ .+. .+++.+-..+.. ..--.+...+++|..+-.
T Consensus 156 ~E~Al~lL~~Lls~~~~~~~~~~~~~l~--~il~~La~~fs~-~~~~~kfell~~L~~~L~ 213 (543)
T PF05536_consen 156 MEIALNLLLNLLSRLGQKSWAEDSQLLH--SILPSLARDFSS-FHGEDKFELLEFLSAFLP 213 (543)
T ss_pred HHHHHHHHHHHHHhcchhhhhhhHHHHH--HHHHHHHHHHHh-hccchHHHHHHHHHHhcC
Confidence 6666677776654433 1111 111 234444444443 333456777888877665
No 108
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=90.21 E-value=14 Score=42.28 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=94.3
Q ss_pred chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhC
Q 012448 76 SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAG 155 (463)
Q Consensus 76 ~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak 155 (463)
.+-.+.++....-=++.+|.||.++++.++.++.- +.+..+..++.+..+....|...+|-..|++.+..+..
T Consensus 233 ~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~-------~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~ 305 (759)
T KOG0211|consen 233 AVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKV-------LESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLD 305 (759)
T ss_pred HHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHH-------HHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHH
Confidence 34444567777777888999999999999997542 33455666899999999999999999999999998875
Q ss_pred CCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHH
Q 012448 156 FPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILEL 235 (463)
Q Consensus 156 ~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalel 235 (463)
.-+--.-+ .....+ .+.+.....+..+|+++-+..+.+.+.=... ...-..++.....+++ .=--++..+..-
T Consensus 306 l~~~~~d~-~~~~~~--~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~---~~~~~~~~~~~~l~~~-~~~e~r~a~a~~ 378 (759)
T KOG0211|consen 306 LLDDDDDV-VKSLTE--SLVQAVEDGSWRVSYMVADKFSELSSAVGPS---ATRTQLVPPVSNLLKD-EEWEVRYAIAKK 378 (759)
T ss_pred hcCCchhh-hhhhhH--HHHHHhcChhHHHHHHHhhhhhhHHHHhccc---cCcccchhhHHHHhcc-hhhhhhHHhhcc
Confidence 54311000 002233 3444666777788888777777666431110 1111344555555555 333444444443
Q ss_pred HHHHHh
Q 012448 236 LYELAE 241 (463)
Q Consensus 236 l~eLa~ 241 (463)
..+++.
T Consensus 379 ~~~l~~ 384 (759)
T KOG0211|consen 379 VQKLAC 384 (759)
T ss_pred hHHHhh
Confidence 334333
No 109
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.01 E-value=5.3 Score=45.19 Aligned_cols=137 Identities=13% Similarity=0.101 Sum_probs=99.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcH-HHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIY-PLLLDCLINGNEEVATASMDAIKKLAGFPNGI 160 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~-~~li~~l~d~d~~va~~A~~~L~~lak~~~~l 160 (463)
...+|++|..||+.+|..|++.+..|= - .. ++ .|+ ..|=.|..|+-.-|.+.|+.++-++=.-.+..
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIR--v---p~-Ia------PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~ 177 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIR--V---PM-IA------PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ 177 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcc--h---hh-HH------HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh
Confidence 677899999999999999988888751 1 11 22 233 33337999999999999999999886554433
Q ss_pred cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHH
Q 012448 161 DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELA 240 (463)
Q Consensus 161 ~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa 240 (463)
+ +.+.+ .++.++...+..|-=-+.-.+-+++ ++-++.+. +-+.++-+-|.+ =|.--|.-.+++|..-|
T Consensus 178 k----~qL~e--~I~~LLaD~splVvgsAv~AF~evC---PerldLIH--knyrklC~ll~d-vdeWgQvvlI~mL~RYA 245 (968)
T KOG1060|consen 178 K----DQLEE--VIKKLLADRSPLVVGSAVMAFEEVC---PERLDLIH--KNYRKLCRLLPD-VDEWGQVVLINMLTRYA 245 (968)
T ss_pred H----HHHHH--HHHHHhcCCCCcchhHHHHHHHHhc---hhHHHHhh--HHHHHHHhhccc-hhhhhHHHHHHHHHHHH
Confidence 2 12334 5666666677766555544555555 77778776 688888888999 88889999999998877
Q ss_pred hh
Q 012448 241 EI 242 (463)
Q Consensus 241 ~t 242 (463)
.+
T Consensus 246 R~ 247 (968)
T KOG1060|consen 246 RH 247 (968)
T ss_pred Hh
Confidence 63
No 110
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=89.93 E-value=3.1 Score=35.03 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=42.7
Q ss_pred ccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhccc
Q 012448 211 NLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNS 265 (463)
Q Consensus 211 gl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~ 265 (463)
.|++.++.++.| .|.=||..|.|-|+++++.--+.-.-.=..+++.|+..+.+.
T Consensus 27 ~Il~pVL~~~~D-~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 27 EILPPVLKCFDD-QDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred HHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 689999999999 999999999999999998544443333456777777776653
No 111
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.87 E-value=27 Score=39.45 Aligned_cols=226 Identities=11% Similarity=0.095 Sum_probs=131.1
Q ss_pred hcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHH
Q 012448 179 AQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQL 257 (463)
Q Consensus 179 ~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~ 257 (463)
..+.+.||-..--++..+.+.|||+... .+.++.++.-|+| +|.=|-..+.-++.-|++ .+..++.=+.- -+.+
T Consensus 158 ~~~~~~vkqkaALclL~L~r~spDl~~~---~~W~~riv~LL~D-~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~ 232 (938)
T KOG1077|consen 158 GSSMDYVKQKAALCLLRLFRKSPDLVNP---GEWAQRIVHLLDD-QHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSR 232 (938)
T ss_pred CcchHHHHHHHHHHHHHHHhcCccccCh---hhHHHHHHHHhCc-cccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHH
Confidence 3556778888888999999999998654 3788999999999 999999999999999999 55544432211 1222
Q ss_pred HHHHhcccccchhhhhhhhhHhhhhccccccchhcchh--hhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-C--
Q 012448 258 LCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDES--SAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-S-- 332 (463)
Q Consensus 258 L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~--~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s-- 332 (463)
|..+......|- ..| .+.|+..| +.| .-..+.. .=...|+..+..-.+++--|=. .
T Consensus 233 L~riv~~~~t~~---------qdY------Tyy~vP~PWL~vK-l~rlLq~---~p~~~D~~~r~~l~evl~~iLnk~~~ 293 (938)
T KOG1077|consen 233 LSRIVVVVGTSL---------QDY------TYYFVPAPWLQVK-LLRLLQI---YPTPEDPSTRARLNEVLERILNKAQE 293 (938)
T ss_pred HHHHHhhcccch---------hhc------eeecCCChHHHHH-HHHHHHh---CCCCCCchHHHHHHHHHHHHHhcccc
Confidence 222222222221 112 12222222 444 2223331 2245667777777777765543 1
Q ss_pred -HHHHHHHhhcC-chhHHHHHHHHHhhccchh-hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCCh
Q 012448 333 -IQGATLLLLCL-PPAARHVIDAAFDRQGHGK-QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTP 409 (463)
Q Consensus 333 -~eGk~~L~~~~-~~~~~~~l~~~~~~~~~~~-k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p 409 (463)
+..|.+-+.+. ...+=.+++.+++.-++.. =.||.+.|+.++... |. .++=+.+|+.....+..+
T Consensus 294 ~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~r--E~----------NiRYLaLEsm~~L~ss~~ 361 (938)
T KOG1077|consen 294 PPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHR--ET----------NIRYLALESMCKLASSEF 361 (938)
T ss_pred CccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcc--cc----------cchhhhHHHHHHHHhccc
Confidence 23444444320 1122223333333322222 668999999999854 31 233333344433211122
Q ss_pred --------hHHHHHHh--cCCHHHHHHHHHHHHHhhcCchh
Q 012448 410 --------SGLFLSVL--QQAAEIRLAGYRMITGLVARPWC 440 (463)
Q Consensus 410 --------~~~~~~~~--qpF~elr~A~~~~l~~l~~~~Wg 440 (463)
.+++++.+ -+.--+|.-|..+|-++|.+.-.
T Consensus 362 s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Na 402 (938)
T KOG1077|consen 362 SIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA 402 (938)
T ss_pred hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhH
Confidence 34555544 67888999999999999999765
No 112
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.27 E-value=2.9 Score=49.01 Aligned_cols=166 Identities=17% Similarity=0.092 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchh-HHHHHHHhhccCcHHHHHHhhc
Q 012448 58 EDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLE-ASCALQLLIDYEIYPLLLDCLI 136 (463)
Q Consensus 58 ~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~-~~~~~~~~~~~~l~~~li~~l~ 136 (463)
...+..+++.+=+....+ -......-+-.=|..-+..|..+++++++-.+.+-+.+ -. +-..+++ -+.-+++..+.
T Consensus 269 ~sl~~~Iir~I~~~~~~~-~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~-lRnavle-i~~n~V~~~l~ 345 (1251)
T KOG0414|consen 269 VSLAGNIIRSIGSPEPNE-KDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYT-LRNAVLE-ICANLVASELR 345 (1251)
T ss_pred HHHHHHHHHHhcccchhc-ccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHH-HHHHHHH-HHHHHHHHHhc
Confidence 444444666553222222 23333444445556678889999999999998854321 11 1111111 12335567777
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHH
Q 012448 137 NGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLL 216 (463)
Q Consensus 137 d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~l 216 (463)
|++.+-...+... ..++ .|.+.+..-++-+|.|||.+..+|+..+..-..... .++..+
T Consensus 346 d~e~~~~sk~~r~-----------------~~le--~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~--eV~~la 404 (1251)
T KOG0414|consen 346 DEELEEMSKSLRD-----------------ELLE--LLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRT--EVLELA 404 (1251)
T ss_pred chhhhHHHHHHHH-----------------HHHH--HHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHH--HHHHHH
Confidence 7775444444333 1222 444466678899999999999999987765555443 577788
Q ss_pred HhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHH
Q 012448 217 EEGVSKKNDTLETLSILELLYELAE-IQHSAEF 248 (463)
Q Consensus 217 l~eL~~~~DvLv~lnalell~eLa~-t~~g~~~ 248 (463)
.+.+.| .-.|||.||+.++..+-. .|.+.+.
T Consensus 405 ~grl~D-kSslVRk~Ai~Ll~~~L~~~Pfs~~~ 436 (1251)
T KOG0414|consen 405 IGRLED-KSSLVRKNAIQLLSSLLDRHPFSSEL 436 (1251)
T ss_pred hccccc-ccHHHHHHHHHHHHHHHhcCCchhhh
Confidence 888989 999999999999999877 7776665
No 113
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=89.25 E-value=3.5 Score=40.91 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHHHHhCCchhHHHHHH-HhhccCcHHHHHHhhc-------CCchHH-----HHHHHHHHHHHhCCCCC
Q 012448 93 SHSVKRLACKTVTCLLEDSDLEASCALQ-LLIDYEIYPLLLDCLI-------NGNEEV-----ATASMDAIKKLAGFPNG 159 (463)
Q Consensus 93 ~~~Vr~Lal~~l~~i~~~~~~~~~~~~~-~~~~~~l~~~li~~l~-------d~d~~v-----a~~A~~~L~~lak~~~~ 159 (463)
+|.-|+-|+.++.+--+.. +. ++- +-...|.+..+++.|- -|.++- --.|...|.-+|.|++=
T Consensus 8 ~~~~Re~Al~eLsk~r~~~---~~-La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpet 83 (262)
T PF04078_consen 8 NPETRENALLELSKKRESF---PD-LAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPET 83 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC----TT-HHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTT
T ss_pred CcchHHHHHHHHHHhhhcc---cc-hhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHH
Confidence 6677999999998854433 33 333 4455666666654433 332222 22366667788998863
Q ss_pred ccccccCCCcchhhHhhHhhcC-----CchhHHHHHHHHHHHHhc-CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHH
Q 012448 160 IDIIFPADNKAATDLGNLVAQC-----SSLGRVRVLSLIVKLFSV-SRSVASVIFKANLLTLLEEGVSKKNDTLETLSIL 233 (463)
Q Consensus 160 l~~l~~~~~~~~~~L~~~~~~~-----~~~vR~Rv~el~v~ia~~-S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnal 233 (463)
-.....++..- +|-+.+... -+.+|.-.+.++..+.|. ++|..++..+++++|..+.-++. ...+.|.-|.
T Consensus 84 r~~Fl~a~ipl--yLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~-GselSKtvAt 160 (262)
T PF04078_consen 84 RMPFLKAHIPL--YLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEF-GSELSKTVAT 160 (262)
T ss_dssp HHHHHHTTGGG--GGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHH-S-HHHHHHHH
T ss_pred HHHHHHcCchh--hehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHh-ccHHHHHHHH
Confidence 33444555543 555554322 366888888888888875 68899999999999999999998 8999999999
Q ss_pred HHHHHHHhhHHHHHHHHhc
Q 012448 234 ELLYELAEIQHSAEFLSRT 252 (463)
Q Consensus 234 ell~eLa~t~~g~~~L~~~ 252 (463)
-++..+-....|.+|+.++
T Consensus 161 fIlqKIL~dd~GL~yiC~t 179 (262)
T PF04078_consen 161 FILQKILLDDVGLNYICQT 179 (262)
T ss_dssp HHHHHHHHSHHHHHHHTSS
T ss_pred HHHHHHHcchhHHHHHhcC
Confidence 9999999999999999876
No 114
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=89.06 E-value=0.89 Score=36.43 Aligned_cols=63 Identities=22% Similarity=0.167 Sum_probs=41.5
Q ss_pred hhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhc
Q 012448 275 AIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLC 342 (463)
Q Consensus 275 aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~ 342 (463)
++.+.|.+.+...-+.|.++ ..-++.+++ ++ -+++-.+++++|+..||.|++|.+|.+.|.+.
T Consensus 7 aLWaighIgss~~G~~lL~~--~~iv~~iv~-~a--~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~ 69 (73)
T PF14668_consen 7 ALWAIGHIGSSPLGIQLLDE--SDIVEDIVK-IA--ENSPVLSIRGTCFYVLGLISSTEEGAEILDEL 69 (73)
T ss_pred HHHHHHhHhcChHHHHHHhh--cCHHHHHHH-HH--HhCCccchHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 55667777764222334322 121333333 32 24566799999999999999999999999864
No 115
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=88.88 E-value=1.2 Score=50.95 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=86.2
Q ss_pred cCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHH
Q 012448 38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASC 117 (463)
Q Consensus 38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~ 117 (463)
...+|.||.++.+.. ++.++.+..++++++. ..-...+.+++..+|+|.+|++|.-+...+.|.++..+. .
T Consensus 335 ~~v~p~lld~lkekk--~~l~d~l~~~~d~~~n----s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~--~- 405 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKK--SELRDALLKALDAILN----STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP--K- 405 (815)
T ss_pred HhhcchHHHHhhhcc--HHHHHHHHHHHHHHHh----cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC--c-
Confidence 446899999999876 7788888888888866 333446889999999999999999999999999987642 1
Q ss_pred HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCC
Q 012448 118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGF 156 (463)
Q Consensus 118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~ 156 (463)
...--.-+++++.++..++|-+-.|..+|..++..+-++
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 122112236899999999999999999998887665444
No 116
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=88.80 E-value=28 Score=35.08 Aligned_cols=190 Identities=24% Similarity=0.210 Sum_probs=118.6
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC
Q 012448 80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG 159 (463)
Q Consensus 80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~ 159 (463)
...+.+...|.++++.||..+.+.++.+ . . ...++.+...+.|++..|...|+.+|..+.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~---~---~---------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL---G---S---------EEAVPLLRELLSDEDPRVRDAAADALGELG----- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh---c---h---------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC-----
Confidence 4688999999999999999999987663 1 1 256888899999999999999999887664
Q ss_pred ccccccCCCcchhhHhhHhh-cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcH------------
Q 012448 160 IDIIFPADNKAATDLGNLVA-QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDT------------ 226 (463)
Q Consensus 160 l~~l~~~~~~~~~~L~~~~~-~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~Dv------------ 226 (463)
++...+ .|.+.+. ..|..+|.++...+..+.... -+..++.-+.+ ++.
T Consensus 103 -----~~~a~~--~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~-~~~~~a~~~~~~~~~ 163 (335)
T COG1413 103 -----DPEAVP--PLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQD-EDSGSAAAALDAALL 163 (335)
T ss_pred -----ChhHHH--HHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhcc-chhhhhhhhccchHH
Confidence 233444 5555666 588889988777666665332 14444555555 332
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHH
Q 012448 227 LETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDG 306 (463)
Q Consensus 227 Lv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~ 306 (463)
.+|..+++.+..+... -.+..+...+.+ .+..+|..+.-..|.+... . +.....
T Consensus 164 ~~r~~a~~~l~~~~~~----------~~~~~l~~~l~~--~~~~vr~~Aa~aL~~~~~~--~------------~~~~~~ 217 (335)
T COG1413 164 DVRAAAAEALGELGDP----------EAIPLLIELLED--EDADVRRAAASALGQLGSE--N------------VEAADL 217 (335)
T ss_pred HHHHHHHHHHHHcCCh----------hhhHHHHHHHhC--chHHHHHHHHHHHHHhhcc--h------------hhHHHH
Confidence 3455555544444331 112222233322 3335665665555555541 0 011222
Q ss_pred HhccccCCChhhhhHHHHHHHhhcCCHH
Q 012448 307 RLGFLQSQDSDECESALEALGQIGSSIQ 334 (463)
Q Consensus 307 ~f~~~~~~d~~~~~~A~dtlG~Igss~e 334 (463)
++.....++...+..++.++|.+|.-..
T Consensus 218 l~~~~~~~~~~vr~~~~~~l~~~~~~~~ 245 (335)
T COG1413 218 LVKALSDESLEVRKAALLALGEIGDEEA 245 (335)
T ss_pred HHHHhcCCCHHHHHHHHHHhcccCcchh
Confidence 2335567778888888999988887433
No 117
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=88.67 E-value=1.3 Score=40.45 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=104.8
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL 119 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~ 119 (463)
.++.|+.+|..-...+..+-.+..++.+++ ...+......+.+++..-+..++..-+..++..+..+.--. ++. ..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~--~dv-~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGP--PDV-GS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT--HHH-HH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC--HHH-HH
Confidence 345667777652223667888888999997 44556667778899999998887778888888888887644 244 77
Q ss_pred HHhhccCcHHHHHHhhc--CCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh-cCCch-hHHHHHHHHHH
Q 012448 120 QLLIDYEIYPLLLDCLI--NGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA-QCSSL-GRVRVLSLIVK 195 (463)
Q Consensus 120 ~~~~~~~l~~~li~~l~--d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~-~~~~~-vR~Rv~el~v~ 195 (463)
+++...|+.+.++..+. .++..+...+.+.|..-+-....-..|. .+..+ -|++... ..|+. +|.|..=.+++
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~-~~~~~--~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFIS-KNYVS--WLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH-HHCHH--HHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH-HHHHH--HHHHHHccccchHHHHHHHHHHHhc
Confidence 78889999999999998 8899999999999987665543333333 45555 7886664 44455 66665444443
No 118
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=88.61 E-value=9.4 Score=37.22 Aligned_cols=143 Identities=20% Similarity=0.202 Sum_probs=88.7
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccch--hcchhhhhhhHHH
Q 012448 226 TLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHM--FIDESSAKTVISA 303 (463)
Q Consensus 226 vLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~--~~~~~~~k~~p~~ 303 (463)
.-...-...++.-|-++++|.+|+..++++.+|.+.+.. .||. .|.... ..+++ -+...+..+|-.+
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~--~d~~--------~g~~~~-~~lfs~~~l~~tl~~~Yf~~ 146 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQ--VDPM--------SGITAH-DPLFSPQRLSTTLSRGYFLF 146 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHH--Hhhh--------cCCccc-ccccCHHHHHhhHHHHHHHH
Confidence 344556778999999999999999999999999999986 5665 343332 01221 0112244556444
Q ss_pred HHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhh
Q 012448 304 IDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKI 383 (463)
Q Consensus 304 l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~ 383 (463)
+|.+.++.+|-++|.+. +-.+.+-+|+..+.
T Consensus 147 ----------------------IG~lS~~~~Gl~lLe~~----------------------~if~~l~~i~~~~~----- 177 (226)
T PF14666_consen 147 ----------------------IGVLSSTPNGLKLLERW----------------------NIFTMLYHIFSLSS----- 177 (226)
T ss_pred ----------------------HHHHhCChhHHHHHHHC----------------------CHHHHHHHHHccCc-----
Confidence 36677899999999974 22334444444321
Q ss_pred hhhhhHHHHHHHHHHHHHhhCCCCChhHHHHH-Hh-cCCHHHHHHHHHHHHHhh
Q 012448 384 ILNADAEESLRHLIYEVASRSSKLTPSGLFLS-VL-QQAAEIRLAGYRMITGLV 435 (463)
Q Consensus 384 il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~-~~-qpF~elr~A~~~~l~~l~ 435 (463)
.++ +.+++..+.==+. ..+.-.+++ .+ ..-..+|+.|-+.|..+.
T Consensus 178 -----~~~-l~klil~~LDY~~-~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 178 -----RDD-LLKLILSSLDYSV-DGHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred -----hHH-HHHHHHhhCCCCC-ccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 123 4445534331122 233444444 44 778899999999988764
No 119
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.57 E-value=2.6 Score=47.21 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=113.2
Q ss_pred HHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHH
Q 012448 65 LERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVAT 144 (463)
Q Consensus 65 L~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~ 144 (463)
++++.....-+.-...+-+.++.|....|-.+|.++=-.+.+.+... .. .+. +.+..++.-..|++..+..
T Consensus 34 ~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~---P~-~a~-----~avnt~~kD~~d~np~iR~ 104 (734)
T KOG1061|consen 34 VKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK---PD-LAI-----LAVNTFLKDCEDPNPLIRA 104 (734)
T ss_pred HHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccC---ch-HHH-----hhhhhhhccCCCCCHHHHH
Confidence 33443333333323345677888999999999999988888877544 22 222 3455667788899999988
Q ss_pred HHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCC
Q 012448 145 ASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKK 223 (463)
Q Consensus 145 ~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~ 223 (463)
.|+..+..+- -+++ +.++ . -|.+.+.+.++.+|.=+--+++++...++ +.|..+|+++.+-.-+.|
T Consensus 105 lAlrtm~~l~--v~~i~ey~~-----~--Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D- 171 (734)
T KOG1061|consen 105 LALRTMGCLR--VDKITEYLC-----D--PLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSD- 171 (734)
T ss_pred HHhhceeeEe--ehHHHHHHH-----H--HHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcC-
Confidence 8887775442 1111 2222 2 55557778899999998888888887777 557889999999999999
Q ss_pred CcHHHHHhHHHHHHHHHhhH
Q 012448 224 NDTLETLSILELLYELAEIQ 243 (463)
Q Consensus 224 ~DvLv~lnalell~eLa~t~ 243 (463)
+|..|-.||+--+.++.+..
T Consensus 172 ~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 172 SNPMVVANALAALSEIHESH 191 (734)
T ss_pred CCchHHHHHHHHHHHHHHhC
Confidence 99999999999999999933
No 120
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=88.11 E-value=30 Score=34.46 Aligned_cols=222 Identities=12% Similarity=0.105 Sum_probs=132.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcccc
Q 012448 84 FVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDII 163 (463)
Q Consensus 84 ~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l 163 (463)
.|...|++.++.+|.-++.-++.++++-... . +.+.-+ .-++.....++.| ......|++.+..+.+.+.
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-~-L~~~ev-~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~~~----- 72 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD-F-LSRQEV-QVLLDFFCSRLDD--HACVQPALKGLLALVKMKN----- 72 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh-h-ccHHHH-HHHHHHHHHHhcc--HhhHHHHHHHHHHHHhCcC-----
Confidence 4677899999999999999999999876321 1 111111 1245566678854 4456666888888876653
Q ss_pred ccCCCcchhhHhhHh-----hcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHH
Q 012448 164 FPADNKAATDLGNLV-----AQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYE 238 (463)
Q Consensus 164 ~~~~~~~~~~L~~~~-----~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~e 238 (463)
++++... ..++.+. ...--..|+.+|+++-.+..+-.+.+..+ ..+++..++..+++..|+=-=+=+.++++.
T Consensus 73 ~~~~~~~-~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~ 150 (262)
T PF14500_consen 73 FSPESAV-KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKV 150 (262)
T ss_pred CChhhHH-HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 2112211 0111111 12345679999999999988866665433 357888999999998999877788888887
Q ss_pred HHhhHHHHHHHHhcchHHHHHHHhc--------ccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhcc
Q 012448 239 LAEIQHSAEFLSRTTLLQLLCSLIG--------NSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGF 310 (463)
Q Consensus 239 La~t~~g~~~L~~~gi~~~L~~~i~--------~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~ 310 (463)
+...-. . ......+.+.+. ...+||..-++--|..+...-+...-.| -.-.+|-++++
T Consensus 151 i~~~~~-----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f----a~~~~p~LleK---- 216 (262)
T PF14500_consen 151 ILQEFD-----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF----APFAFPLLLEK---- 216 (262)
T ss_pred HHHhcc-----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh----HHHHHHHHHHH----
Confidence 776322 1 334444444442 2346775323333333332221111111 11235555554
Q ss_pred ccCCChhhhhHHHHHHHhhcC
Q 012448 311 LQSQDSDECESALEALGQIGS 331 (463)
Q Consensus 311 ~~~~d~~~~~~A~dtlG~Igs 331 (463)
+.+..+..|.-++.||..-..
T Consensus 217 L~s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 217 LDSTSPSVKLDSLQTLKACIE 237 (262)
T ss_pred HcCCCcHHHHHHHHHHHHHHH
Confidence 577888888888888876444
No 121
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=87.97 E-value=3.8 Score=38.61 Aligned_cols=90 Identities=17% Similarity=0.208 Sum_probs=60.1
Q ss_pred CChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhH
Q 012448 39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEA 115 (463)
Q Consensus 39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~ 115 (463)
.-||.+|+.|.+.. .-|+=.+..-..-++..-.+. .+.||+...|.++|.+.++.|...+++.+..++... +
T Consensus 38 ~~Lpif~dGL~Et~--~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~---~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETE--HPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS---D 112 (183)
T ss_pred hHHHHHHhhhhccC--ccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh---h
Confidence 44889999999865 334433333333333332222 478899999999999999999999999999997655 3
Q ss_pred HHHHHHhhccCcHHHHHHhhc
Q 012448 116 SCALQLLIDYEIYPLLLDCLI 136 (463)
Q Consensus 116 ~~~~~~~~~~~l~~~li~~l~ 136 (463)
. +-+.++-+ |+.++..+.
T Consensus 113 ~-vG~aLvPy--yrqLLp~ln 130 (183)
T PF10274_consen 113 M-VGEALVPY--YRQLLPVLN 130 (183)
T ss_pred h-hhHHHHHH--HHHHHHHHH
Confidence 3 44444443 555554443
No 122
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=87.93 E-value=7.9 Score=42.62 Aligned_cols=195 Identities=14% Similarity=0.132 Sum_probs=124.1
Q ss_pred hHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccc--cchhhchHHHHHH
Q 012448 10 SNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG--ASLIPHYMPFVQV 87 (463)
Q Consensus 10 ~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~--~~l~~~~~~~l~~ 87 (463)
+..++.--.+|-+|- -+.+.+-.++|+.+ +-.++..+.+.+ +..+..++.+|..+.+...+ ..++.-+..-|..
T Consensus 64 ~dRil~fl~~f~~Y~-~~~dpeg~~~V~~~-~~h~lRg~eskd--k~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~ 139 (885)
T COG5218 64 PDRILSFLKRFFEYD-MPDDPEGEELVAGT-FYHLLRGTESKD--KKVRKRSLQILALLSDVVREIDEVLANGLLEKLSE 139 (885)
T ss_pred HHHHHHHHHHHHHhc-CCCChhhhHHHHHH-HHHHHhcccCcc--hhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 345566666777762 22333446666543 345566666655 67889999999999877766 4577777888888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhh-cCCchHHHHHHHHHHHHHhCCCCCccccccC
Q 012448 88 GLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCL-INGNEEVATASMDAIKKLAGFPNGIDIIFPA 166 (463)
Q Consensus 88 gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l-~d~d~~va~~A~~~L~~lak~~~~l~~l~~~ 166 (463)
-+-.-.+.||.=|+..+.+.=+..+++.. .+.-++...+ .||..+|.+.|+.-+ .+|+
T Consensus 140 R~~DRE~~VR~eAv~~L~~~Qe~~~neen---------~~~n~l~~~vqnDPS~EVRr~allni------------~vdn 198 (885)
T COG5218 140 RLFDREKAVRREAVKVLCYYQEMELNEEN---------RIVNLLKDIVQNDPSDEVRRLALLNI------------SVDN 198 (885)
T ss_pred HHhcchHHHHHHHHHHHHHHHhccCChHH---------HHHHHHHHHHhcCcHHHHHHHHHHHe------------eeCC
Confidence 88889999999999999998765544332 1222233333 478888988876544 4677
Q ss_pred CCcchhhHhhHhhcCCchhHHHHHH-HHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHH
Q 012448 167 DNKAATDLGNLVAQCSSLGRVRVLS-LIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLY 237 (463)
Q Consensus 167 ~~~~~~~L~~~~~~~~~~vR~Rv~e-l~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~ 237 (463)
+..+ .+-+....-|...|+-||+ ++-.|...--.. ++.-++ .+.--|.+ .|.-|+..+..++.
T Consensus 199 sT~p--~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls----i~kri~-l~ewgl~d-Re~sv~~a~~d~ia 262 (885)
T COG5218 199 STYP--CILERARDVSGANRRMVYERCLPRIGDLKSLS----IDKRIL-LMEWGLLD-REFSVKGALVDAIA 262 (885)
T ss_pred Ccch--hHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc----ccceeh-hhhhcchh-hhhhHHHHHHHHHH
Confidence 7887 6666778888899999998 444443322111 112222 22224555 56666666665553
No 123
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=87.61 E-value=27 Score=43.73 Aligned_cols=90 Identities=20% Similarity=0.232 Sum_probs=65.5
Q ss_pred hcCCchhHH---HHHHHHHHHH--hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHH----------------hHHHHHH
Q 012448 179 AQCSSLGRV---RVLSLIVKLF--SVSRSVASVIFKANLLTLLEEGVSKKNDTLETL----------------SILELLY 237 (463)
Q Consensus 179 ~~~~~~vR~---Rv~el~v~ia--~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~l----------------nalell~ 237 (463)
....+.-|. -+++.++++. ..+....+++...|++..++..+++ .|..++- +-+-+|.
T Consensus 1462 ~~g~~~~r~~Al~lLdaLv~ld~~~~~~~il~~L~~~g~L~~lv~sl~~-~d~~l~~~~~~~~~~l~~L~~yea~laLL~ 1540 (1691)
T PF11894_consen 1462 IDGHGVCRILALSLLDALVQLDSQEKSNFILEYLSRRGYLKSLVDSLKR-TDEDLQASLQPIPDSLRELYVYEAKLALLL 1540 (1691)
T ss_pred hcCcccHHHHHHHHHHHHHHhcccccccHHHHHHHhCCcHHHHHHHHHh-hHHHHHhccCCCCcchHhHHHHHHHHHHHH
Confidence 334444444 4556666666 2457889999999999999999977 5444433 3456889
Q ss_pred HHHhhHHHHHHHHhcchHHHHHHHhcccccchh
Q 012448 238 ELAEIQHSAEFLSRTTLLQLLCSLIGNSATETI 270 (463)
Q Consensus 238 eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl 270 (463)
.+|+|..||++|.+.|++..|.+. .--+.||.
T Consensus 1541 RiAqtr~GA~~Ll~~~lf~~L~~~-~~l~~~Pd 1572 (1691)
T PF11894_consen 1541 RIAQTRSGAEALLQSGLFQVLAEC-KFLDADPD 1572 (1691)
T ss_pred HHHcChHHHHHHHHCCHHHHHHcC-CCcCCCCc
Confidence 999999999999999999998654 22346675
No 124
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=87.60 E-value=9.4 Score=35.26 Aligned_cols=117 Identities=20% Similarity=0.278 Sum_probs=88.4
Q ss_pred HHHHHhcCChHHHHHccccCCC-CcchHHHHHHHHHHHhccc-cc--------cchhhchHHHHHHhhcCCCHHHHHHHH
Q 012448 32 AKKFLDRFPLSVILNTLQTKPD-VPGLEDTLVVCLERIFKTK-YG--------ASLIPHYMPFVQVGLTADSHSVKRLAC 101 (463)
Q Consensus 32 ~~~~~~~~~l~~L~~~L~~~~~-~~~~~~~~~~vL~~il~~~-~~--------~~l~~~~~~~l~~gL~h~~~~Vr~Lal 101 (463)
|.+|.++..++.|+.-..++.+ .+...+..+..|.....=. |+ ..+..++..++... ..++.|-+.++
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~--~~d~~i~q~sL 81 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSS--AMDASILQRSL 81 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccc--cccchHHHHHH
Confidence 6799999999999999988764 2345677777555543211 22 13445556666622 22799999999
Q ss_pred HHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 012448 102 KTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLA 154 (463)
Q Consensus 102 ~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~la 154 (463)
.-+-.++-++ .. +.+.+.+.=-++.++.+|++.+..+...|+..+-.+.
T Consensus 82 aILEs~Vl~S---~~-ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 82 AILESIVLNS---PK-LYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHHHhCC---HH-HHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999988 66 8889988889999999999999999999988886663
No 125
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.33 E-value=19 Score=40.92 Aligned_cols=361 Identities=14% Similarity=0.128 Sum_probs=170.2
Q ss_pred CCCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHH---HHHHHhcccccc-----ch
Q 012448 6 SMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVV---CLERIFKTKYGA-----SL 77 (463)
Q Consensus 6 ~~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~---vL~~il~~~~~~-----~l 77 (463)
+--|-.+++|.|+-|..-|= |..-. .+.|..|+|.|+++. ...+.++.+ -+.|+|+.+++. ++
T Consensus 16 ~~l~k~~vlqe~r~fnespv--n~r~c-----~~~lskllyll~qge--~~~~~eate~ff~~tKlfQskd~~LRr~vYl 86 (865)
T KOG1078|consen 16 QHLEKTTVLQEARTFNESPV--NPRKC-----RHILSKLLYLLNQGE--HFGETEATELFFAITKLFQSKDVSLRRMVYL 86 (865)
T ss_pred cChhHHHHHHHHHhhcCCCC--CHHHH-----HHHHHHHHHHHhccc--ccchhhHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 33455689999996665543 33333 345678999999864 444444444 677777766442 11
Q ss_pred hh--------c---hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHH
Q 012448 78 IP--------H---YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATAS 146 (463)
Q Consensus 78 ~~--------~---~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A 146 (463)
+- . +...+..=.+.-.+.+|--|++.+.+++..... + ++=..+=+++-|....++..|
T Consensus 87 ~Ikels~isedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~------~-----~iery~kqaivd~~~avSsaa 155 (865)
T KOG1078|consen 87 AIKELSKISEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTML------Q-----AIERYMKQAIVDKNPAVSSAA 155 (865)
T ss_pred HHhhccccchhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchh------H-----HHHHHHHhHeeccccccchHH
Confidence 10 0 134444455666788888888888888775511 1 122233356777777777666
Q ss_pred HHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcH
Q 012448 147 MDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDT 226 (463)
Q Consensus 147 ~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~Dv 226 (463)
.-.=-.+.+.... ++.... ...++.+...|.++.+-++-++-+|-++-.-+...++ ..|.. +-+++ +
T Consensus 156 lvss~hll~~~~~---~vkrw~---neiqea~~s~~~m~QyHalglLyqirk~drla~sklv--~~~~~--~~~~~---~ 222 (865)
T KOG1078|consen 156 LVSSYHLLPISFD---VVKRWA---NEVQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLV--QKFTR--GSLKS---P 222 (865)
T ss_pred HHHHhhhhcccHH---HHHHHH---HhhhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHcc--ccccc---h
Confidence 5432222222211 111011 1222233444556667777777776554333333222 11111 22222 2
Q ss_pred HHHHhHHHHHHHHHh-hHHHHHHHHhcch----HHHHHHHhcccccchhhhhhhhhHhhh-hccccccchhcchhhhhhh
Q 012448 227 LETLSILELLYELAE-IQHSAEFLSRTTL----LQLLCSLIGNSATETILRSRAIMISGR-LLSKDDSHMFIDESSAKTV 300 (463)
Q Consensus 227 Lv~lnalell~eLa~-t~~g~~~L~~~gi----~~~L~~~i~~~~~dpl~r~~aili~g~-i~~f~~~~~~~~~~~~k~~ 300 (463)
.....+++..++ ..+. +.. +..|-+.+.+-.+.-+ +=+++ +-+..+.. . +-... -
T Consensus 223 ---~A~~~lir~~~~~l~~~------~~~~s~~~~fl~s~l~~K~emV~------~EaArai~~l~~~~--~-r~l~p-a 283 (865)
T KOG1078|consen 223 ---LAVCMLIRIASELLKEN------QQADSPLFPFLESCLRHKSEMVI------YEAARAIVSLPNTN--S-RELAP-A 283 (865)
T ss_pred ---hHHHHHHHHHHHHhhhc------ccchhhHHHHHHHHHhchhHHHH------HHHHHHHhhccccC--H-hhcch-H
Confidence 222333333332 1110 111 1112111111111110 00111 11111110 0 00111 1
Q ss_pred HHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCch
Q 012448 301 ISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSE 380 (463)
Q Consensus 301 p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~ 380 (463)
...++. ++.++....+=+|+-||-.++.+--++-.-.. ..+. ..++..-|-.+.=|++.+|..++..
T Consensus 284 vs~Lq~---flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN---~elE-------~lItd~NrsIat~AITtLLKTG~e~ 350 (865)
T KOG1078|consen 284 VSVLQL---FLSSPKVALRFAAVRTLNKVAMKHPQAVTVCN---LDLE-------SLITDSNRSIATLAITTLLKTGTES 350 (865)
T ss_pred HHHHHH---HhcCcHHHHHHHHHHHHHHHHHhCCccccccc---hhHH-------hhhcccccchhHHHHHHHHHhcchh
Confidence 112221 34567777777788887776653322221111 1112 2222333555566778888766322
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhCCCCC----hhHHHHHHhcCCHHHHHHHHHHHHHhhcCchh
Q 012448 381 DKIILNADAEESLRHLIYEVASRSSKLT----PSGLFLSVLQQAAEIRLAGYRMITGLVARPWC 440 (463)
Q Consensus 381 ~~~il~~~~e~~l~~~~ye~~~~~~~~~----p~~~~~~~~qpF~elr~A~~~~l~~l~~~~Wg 440 (463)
.-++|.+.+ .++-+-+++. -.+.+.++|+-||--+...+.+|..+-.+.-|
T Consensus 351 --------sv~rLm~qI-~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg 405 (865)
T KOG1078|consen 351 --------SVDRLMKQI-SSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGG 405 (865)
T ss_pred --------HHHHHHHHH-HHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccC
Confidence 222566666 5555533332 23557777777888888777777766555443
No 126
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.12 E-value=9.3 Score=43.69 Aligned_cols=184 Identities=20% Similarity=0.199 Sum_probs=129.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID 161 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~ 161 (463)
.+....-+..|-+.+|-.++.++.+.+++- . -.+.....+++...++.+.|.|.-|=-.|++.+.-++.-
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r---~--~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev----- 798 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKR---K--KATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV----- 798 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhc---c--hhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-----
Confidence 455566778899999999999999999965 2 234555568899999999999999999999977777633
Q ss_pred ccccCCCcchhhHhhHhhcCC----chhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHH
Q 012448 162 IIFPADNKAATDLGNLVAQCS----SLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLY 237 (463)
Q Consensus 162 ~l~~~~~~~~~~L~~~~~~~~----~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~ 237 (463)
++.+.++ +|.+.-.+.+ ..-|++|=|.+.+++..--|+...-.+ -+++-++.-+++ +|.-.|++++-.+.
T Consensus 799 --y~e~il~--dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvre-pd~~~RaSS~a~lg 872 (982)
T KOG4653|consen 799 --YPEDILP--DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVRE-PDHEFRASSLANLG 872 (982)
T ss_pred --cchhhHH--HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCC-chHHHHHhHHHHHH
Confidence 5566666 5554333333 345888889999999877666655444 677778888888 99999999999999
Q ss_pred HHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhc
Q 012448 238 ELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLL 283 (463)
Q Consensus 238 eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~ 283 (463)
+++. +..+..= .=..++..|++.+.. ...+++|.-|+.+..-.+
T Consensus 873 ~Lcq~~a~~vsd-~~~ev~~~Il~l~~~-d~s~~vRRaAv~li~~lL 917 (982)
T KOG4653|consen 873 QLCQLLAFQVSD-FFHEVLQLILSLETT-DGSVLVRRAAVHLLAELL 917 (982)
T ss_pred HHHHHHhhhhhH-HHHHHHHHHHHHHcc-CCchhhHHHHHHHHHHHH
Confidence 9999 4322211 112344444444333 455666655555444443
No 127
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=87.11 E-value=1.4 Score=29.77 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=33.9
Q ss_pred HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhC
Q 012448 118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAG 155 (463)
Q Consensus 118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak 155 (463)
..+.+.+.|.++.++.+++.++..+.+.|..+|..|+.
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 45677888999999999999999999999999998863
No 128
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=86.72 E-value=15 Score=38.00 Aligned_cols=202 Identities=10% Similarity=0.139 Sum_probs=138.2
Q ss_pred HHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-------chh---hchHHHHHHhhcCCCHHHHHH
Q 012448 30 AAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-------SLI---PHYMPFVQVGLTADSHSVKRL 99 (463)
Q Consensus 30 ~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-------~l~---~~~~~~l~~gL~h~~~~Vr~L 99 (463)
..+.++....-++.|+.+|..-+ =+.++.++.+...++-...+. .+. |.+...|..|.++|+-.+
T Consensus 67 qLa~Ei~~~dll~~Li~~L~~L~--fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--- 141 (335)
T PF08569_consen 67 QLAQEIYRSDLLYLLIRNLPKLD--FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--- 141 (335)
T ss_dssp HHHHHHHHHTHHHHHHHTGGGS---HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH---
T ss_pred HHHHHHHHhCHHHHHHHHhhhCC--CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc---
Confidence 45677888888999999998765 456778888777776433222 222 446889999999998653
Q ss_pred HHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcc-hhhHhhH
Q 012448 100 ACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKA-ATDLGNL 177 (463)
Q Consensus 100 al~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~-~~~L~~~ 177 (463)
.|..+.|..-+. +. +++.+...+.+-.+..-++.+.-.||..|..+++.+-..++.+ ...+..+.-. -.....+
T Consensus 142 ~~g~mlRec~k~---e~-l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~L 217 (335)
T PF08569_consen 142 NCGDMLRECIKH---ES-LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKL 217 (335)
T ss_dssp HHHHHHHHHTTS---HH-HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHhh---HH-HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555544333 45 7777777777777889999999999999999999974333333 2222222210 0255567
Q ss_pred hhcCCchhHHHHHHHHHHHHhc---CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 178 VAQCSSLGRVRVLSLIVKLFSV---SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 178 ~~~~~~~vR~Rv~el~v~ia~~---S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
+.+.|=+.|++.+.++.+|-.- ..-...++.+..-+..+..-|++ +=--+|.-|.-++.=.+.
T Consensus 218 l~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d-~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 218 LESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRD-KSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH
T ss_pred ccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHh
Confidence 7889999999999999999732 23445677777888899999998 766788888888776555
No 129
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.69 E-value=11 Score=42.28 Aligned_cols=76 Identities=16% Similarity=0.244 Sum_probs=60.4
Q ss_pred chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCc-hhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 012448 76 SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSD-LEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLA 154 (463)
Q Consensus 76 ~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~-~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~la 154 (463)
.+.+...-++.+|.++++..||-=+|.-+.++.+... .++. +.. ++..-+...|-|.+..|...|..+|+++-
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~-vfn-----~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ 154 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDD-VFN-----KLNEKLLIRLKDREPNVRIQAVLALSRLQ 154 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHH-HHH-----HHHHHHHHHHhccCchHHHHHHHHHHHHh
Confidence 5677789999999999999999999999999987441 1122 322 45556667899999999999999999997
Q ss_pred CCC
Q 012448 155 GFP 157 (463)
Q Consensus 155 k~~ 157 (463)
..+
T Consensus 155 ~d~ 157 (892)
T KOG2025|consen 155 GDP 157 (892)
T ss_pred cCC
Confidence 544
No 130
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.55 E-value=6.7 Score=41.73 Aligned_cols=164 Identities=18% Similarity=0.190 Sum_probs=118.3
Q ss_pred HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC------CCc----cccccCCCcchhhHhhHhhcCCchhHH
Q 012448 118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP------NGI----DIIFPADNKAATDLGNLVAQCSSLGRV 187 (463)
Q Consensus 118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~------~~l----~~l~~~~~~~~~~L~~~~~~~~~~vR~ 187 (463)
+.-++++-+.++.++..++.+++-|+-+..+.|.++.-.. .|. +++++.+++. .|.+.+.+-|+.++=
T Consensus 117 LYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vla--LLvqnveRLdEsvke 194 (536)
T KOG2734|consen 117 LYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLA--LLVQNVERLDESVKE 194 (536)
T ss_pred HHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHH--HHHHHHHHhhhcchh
Confidence 7778888889999999999999999999999988775332 343 3556667776 666566666666653
Q ss_pred ------HHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCC--CcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHH
Q 012448 188 ------RVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKK--NDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLL 258 (463)
Q Consensus 188 ------Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~--~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L 258 (463)
-++.++.++...-++..+.|++.|++.|++..+.+. -|. -+.=|.|++.=+-+ +.+....+-+-.+++.+
T Consensus 195 ea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~a-Nk~YasEiLaillq~s~e~~~~~~~l~GiD~l 273 (536)
T KOG2734|consen 195 EADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDA-NKQYASEILAILLQNSDENRKLLGPLDGIDVL 273 (536)
T ss_pred hhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcch-hHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence 445678888899999999999999999999987772 243 34567899888888 55577777788888888
Q ss_pred HHHhcccc-cchhh--------hhhhhhHhhhhcc
Q 012448 259 CSLIGNSA-TETIL--------RSRAIMISGRLLS 284 (463)
Q Consensus 259 ~~~i~~~~-~dpl~--------r~~aili~g~i~~ 284 (463)
..-+.--+ .||-. ...--|+++.+.+
T Consensus 274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~ 308 (536)
T KOG2734|consen 274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAP 308 (536)
T ss_pred HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcCh
Confidence 87765322 55421 1122356666665
No 131
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.52 E-value=3.6 Score=45.62 Aligned_cols=150 Identities=15% Similarity=0.101 Sum_probs=103.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccc
Q 012448 83 PFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDI 162 (463)
Q Consensus 83 ~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~ 162 (463)
..++.||+...-.||+.|...+++++-+. .. .+. ..+-++++.+.|+...|-..|+.+|..|+.|-
T Consensus 376 GA~VhGlEDEf~EVR~AAV~Sl~~La~ss---P~-FA~-----~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l----- 441 (823)
T KOG2259|consen 376 GALVHGLEDEFYEVRRAAVASLCSLATSS---PG-FAV-----RALDFLVDMFNDEIEVVRLKAIFALTMISVHL----- 441 (823)
T ss_pred ceeeeechHHHHHHHHHHHHHHHHHHcCC---CC-cHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-----
Confidence 56788999999999999999999998765 22 221 35678889999999999999999999999883
Q ss_pred cccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhh
Q 012448 163 IFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEI 242 (463)
Q Consensus 163 l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t 242 (463)
....+.++ +.|. -+...+..+|--..+++...--...+.++.|+. ++++.+-.-=+|.++++ -++..++ +
T Consensus 442 ~i~eeql~-~il~-~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~-~lL~~L~kyPqDrd~i~------~cm~~iG-q 511 (823)
T KOG2259|consen 442 AIREEQLR-QILE-SLEDRSVDVREALRELLKNARVSDLECIDMCVA-HLLKNLGKYPQDRDEIL------RCMGRIG-Q 511 (823)
T ss_pred eecHHHHH-HHHH-HHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHhhhCCCCcHHHH------HHHHHHh-c
Confidence 22333443 2333 566778888888888887665556777777764 55555544445523332 3344444 4
Q ss_pred HHHHHHHHhcchHH
Q 012448 243 QHSAEFLSRTTLLQ 256 (463)
Q Consensus 243 ~~g~~~L~~~gi~~ 256 (463)
+|+..++...|-+-
T Consensus 512 nH~~lv~s~m~rfl 525 (823)
T KOG2259|consen 512 NHRRLVLSNMGRFL 525 (823)
T ss_pred cChhhHHHHHHHHH
Confidence 56666655544433
No 132
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.37 E-value=11 Score=42.66 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=51.1
Q ss_pred ccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhcc-CcHHHHHHhhcCCchHHHHHHHH
Q 012448 70 KTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDY-EIYPLLLDCLINGNEEVATASMD 148 (463)
Q Consensus 70 ~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~-~l~~~li~~l~d~d~~va~~A~~ 148 (463)
..+.-+++...+.+.+.+||+|+++-||+=|.-++..|-.+.+ .++.|+ +++.. ..+.+.|.++++.|--
T Consensus 124 ckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~-------~L~pDapeLi~~--fL~~e~DpsCkRNAFi 194 (948)
T KOG1058|consen 124 CKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-------HLIPDAPELIES--FLLTEQDPSCKRNAFL 194 (948)
T ss_pred hhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-------hhcCChHHHHHH--HHHhccCchhHHHHHH
Confidence 3445667777889999999999999999999999999887742 122221 11111 2456778888888765
Q ss_pred HHH
Q 012448 149 AIK 151 (463)
Q Consensus 149 ~L~ 151 (463)
.|-
T Consensus 195 ~L~ 197 (948)
T KOG1058|consen 195 MLF 197 (948)
T ss_pred HHH
Confidence 553
No 133
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=85.42 E-value=11 Score=40.59 Aligned_cols=158 Identities=15% Similarity=0.041 Sum_probs=96.8
Q ss_pred HHHHhhccCcHHHHHHhhcCCchHH--HHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh-cCCchhHHHHHHHHH
Q 012448 118 ALQLLIDYEIYPLLLDCLINGNEEV--ATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA-QCSSLGRVRVLSLIV 194 (463)
Q Consensus 118 ~~~~~~~~~l~~~li~~l~d~d~~v--a~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~-~~~~~vR~Rv~el~v 194 (463)
++..+.+.+-+.+++..++.|+++- .-.|.+.|..+.... ..+-+..-+. . .+.++.. +.-....+-+..++-
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae-N~d~va~~~~-~--~Il~lAK~~e~~e~aR~~~~il~ 247 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE-NRDRVARIGL-G--VILNLAKEREPVELARSVAGILE 247 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh-hhhHHhhccc-h--hhhhhhhhcCcHHHHHHHHHHHH
Confidence 6677777888999999999998765 778888888875332 2333333232 1 2221221 234455677899999
Q ss_pred HHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh--hHHHHHHHHhcchHHHHHHHhcccccchhhh
Q 012448 195 KLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE--IQHSAEFLSRTTLLQLLCSLIGNSATETILR 272 (463)
Q Consensus 195 ~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~--t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r 272 (463)
+++|||++.-...++.|-++.++.-.+-++--|+|-.|+.+ ...+- ...+-+-+++..+..-|.-... ..|.+.|
T Consensus 248 ~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL-~N~~L~~~~a~qrrmveKr~~EWLF~LA~--skDel~R 324 (832)
T KOG3678|consen 248 HMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALAL-GNCALHGGQAVQRRMVEKRAAEWLFPLAF--SKDELLR 324 (832)
T ss_pred HHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHh-hhhhhhchhHHHHHHHHhhhhhhhhhhhc--chHHHHH
Confidence 99999999999999999999999888875545556555543 22222 3334344444333333322211 1244555
Q ss_pred hhhhhHhhhh
Q 012448 273 SRAIMISGRL 282 (463)
Q Consensus 273 ~~aili~g~i 282 (463)
..|-+....+
T Consensus 325 ~~AClAV~vl 334 (832)
T KOG3678|consen 325 LHACLAVAVL 334 (832)
T ss_pred HHHHHHHhhh
Confidence 5554444433
No 134
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=85.35 E-value=1.3 Score=49.63 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=63.1
Q ss_pred hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCC
Q 012448 77 LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGF 156 (463)
Q Consensus 77 l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~ 156 (463)
+..+|.+.|..--..|-+.||.=+++.+..++.+. ++ - ...++.++|+-||||+--+|..|.-.|..|..-
T Consensus 301 ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~k---PE-q-----E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~ 371 (988)
T KOG2038|consen 301 LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNK---PE-Q-----ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAK 371 (988)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCC---cH-H-----HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhh
Confidence 34566778888888889999999999999999876 22 1 235889999999999999999999999988555
Q ss_pred CCCcccccc
Q 012448 157 PNGIDIIFP 165 (463)
Q Consensus 157 ~~~l~~l~~ 165 (463)
+|.+..|+-
T Consensus 372 HPnMK~Vvi 380 (988)
T KOG2038|consen 372 HPNMKIVVI 380 (988)
T ss_pred CCcceeehH
Confidence 556665443
No 135
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=84.66 E-value=4.2 Score=44.20 Aligned_cols=186 Identities=24% Similarity=0.232 Sum_probs=113.9
Q ss_pred hccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh-----------cCCchhHHHHHH
Q 012448 123 IDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA-----------QCSSLGRVRVLS 191 (463)
Q Consensus 123 ~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~-----------~~~~~vR~Rv~e 191 (463)
.+.+.++..+-+-+|++.+|+..|-..|+++....+ |+.++. .|-.+.. -.+..+|.|++.
T Consensus 234 ~d~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~e------d~~~V~--~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~ 305 (501)
T PF13001_consen 234 PDEERFPPLLIASADSNSSVSDRAEDLLKRLSVSLE------DPDLVD--RLFDLYLGKGIPPENGRPPASPRLQEKILS 305 (501)
T ss_pred CcHhHHhheeeEEeCCcchHHHHHHHHHhhcCCCCC------CHHHHH--HHHHHHHhcCCchhcCCCCCCHHHHHHHHH
Confidence 455677777778899999999999999999976622 455554 4444544 468889999988
Q ss_pred HHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCC--cHHHHHhHHHHH---HHHHh--hHHHHHHHHhcchHHHHHHHhc-
Q 012448 192 LIVKLFSVSRSVASVIFKANLLTLLEEGVSKKN--DTLETLSILELL---YELAE--IQHSAEFLSRTTLLQLLCSLIG- 263 (463)
Q Consensus 192 l~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~--DvLv~lnalell---~eLa~--t~~g~~~L~~~gi~~~L~~~i~- 263 (463)
++.+ |..++... ..++.-+...+.+ + ..=+|.-+++.+ ..... .+...+ ..+..++..+-..+.
T Consensus 306 ~L~k----S~~Aa~~~--~~~~~i~~~~l~~-~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~-~l~~~i~~~g~p~~~~ 377 (501)
T PF13001_consen 306 LLSK----SVIAATSF--PNILQIVFDGLYS-DNTNSKLKSLALQFIRGSSWIFKHISPQILK-LLRPVILSQGWPLIQD 377 (501)
T ss_pred HHHH----hHHHHhCC--ccHHHHHhccccC-CccccccchhcchhhhcchHHhhhcCHHHHH-HHHHHHHhcCcccccc
Confidence 8876 33332221 1344455556666 4 455566677777 33333 111111 223334444444442
Q ss_pred -----ccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448 264 -----NSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS 331 (463)
Q Consensus 264 -----~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs 331 (463)
+..++.-.|+.+--..|.++.. .- +...+ =..++..+|+.+++.++.++.+.-++|+.+..
T Consensus 378 ~~~~~~~~~~~~lR~~aYe~lG~L~~~--~p----~l~~~-d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 378 SSSQSNSSEDIELRSLAYETLGLLAKR--AP----SLFSK-DLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred ccccCCCcccHHHHHHHHHHHHHHHcc--Cc----ccccc-cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 2234555666666666766652 11 11222 24677788988888888999888889887765
No 136
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.62 E-value=1.9 Score=37.81 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=55.6
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 012448 82 MPFVQVGL-TADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLA 154 (463)
Q Consensus 82 ~~~l~~gL-~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~la 154 (463)
..-|..-| +..|+.+-..||.-||..+++- +. ....+.+-+.=..|+..+.++|.+|+..|+.++.++-
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~---p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHY---PN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH----GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHC---hh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 44455555 4448999999999999999987 55 5667788888899999999999999999999998873
No 137
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=84.20 E-value=64 Score=34.57 Aligned_cols=187 Identities=17% Similarity=0.136 Sum_probs=126.4
Q ss_pred hchHHHHHHhhcC-CCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhc-----cCcHHHHHHhhcCCchHHHHHHHHHHHH
Q 012448 79 PHYMPFVQVGLTA-DSHSVKRLACKTVTCLLEDSDLEASCALQLLID-----YEIYPLLLDCLINGNEEVATASMDAIKK 152 (463)
Q Consensus 79 ~~~~~~l~~gL~h-~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~-----~~l~~~li~~l~d~d~~va~~A~~~L~~ 152 (463)
++|...+...|.+ +++.+.+-++.-+.-++... .. .++.+.+ ++.+...+..+..+|.-+...|..+|+.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~---~~-~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~ 127 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED---DT-RVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAK 127 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc---hH-HHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHH
Confidence 4455555555544 36777778888888877765 44 5555554 4677777788889999999999999999
Q ss_pred HhCCCCCc-cccccCCCcchhhHhhHhhcC-CchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCC-cHHHH
Q 012448 153 LAGFPNGI-DIIFPADNKAATDLGNLVAQC-SSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKN-DTLET 229 (463)
Q Consensus 153 lak~~~~l-~~l~~~~~~~~~~L~~~~~~~-~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~-DvLv~ 229 (463)
+....+.- +....+-..+ .|...+... +.-.+.=+..++..+.+..+-- ....+.+.++.+..-|+... ++-++
T Consensus 128 l~~~~~~~~~~~~l~~~~~--~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 128 LACFGLAKMEGSDLDYYFN--WLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred HHhcCccccchhHHHHHHH--HHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHH
Confidence 98665421 1100000112 344333322 2223323335677777765544 44455567788888887644 67778
Q ss_pred HhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhh
Q 012448 230 LSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILR 272 (463)
Q Consensus 230 lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r 272 (463)
-.++=++=-|+=.+++...+.+.+++..|++++..+.-.-.+|
T Consensus 205 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvR 247 (429)
T cd00256 205 YQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIR 247 (429)
T ss_pred HHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHH
Confidence 8888888888888889999999999999999999988888776
No 138
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.86 E-value=12 Score=42.71 Aligned_cols=176 Identities=17% Similarity=0.151 Sum_probs=117.4
Q ss_pred CCchhHHHHHHH--HHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHH
Q 012448 181 CSSLGRVRVLSL--IVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLL 258 (463)
Q Consensus 181 ~~~~vR~Rv~el--~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L 258 (463)
.|+.+-.|+|.+ +.+++..- +........++|..++.-|+| +|..|=+||+.-+.-|++- ....+++.+
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~Lkd-edsyvyLnaI~gv~~Lcev-------y~e~il~dL 807 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKD-EDSYVYLNAIRGVVSLCEV-------YPEDILPDL 807 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcc-cCceeeHHHHHHHHHHHHh-------cchhhHHHH
Confidence 466666676654 45555432 455555666999999999999 9999999999988888873 356788888
Q ss_pred HHHhcccccch--hhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHH
Q 012448 259 CSLIGNSATET--ILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGA 336 (463)
Q Consensus 259 ~~~i~~~~~dp--l~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk 336 (463)
.+.-.+.+.-+ -. .|-.|.-.- +++.--++.+.|.+-..+++++..+.++|-.-++.++-.+|+++.-..|.
T Consensus 808 ~e~Y~s~k~k~~~d~----~lkVGEai~--k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDY----RLKVGEAIL--KVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred HHHHHhcccCCCccc----eehHHHHHH--HHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 88444433222 21 233442111 21111223367777788888888888888788999999999988633321
Q ss_pred HHHhhcCchhHHHHHHHHHhhccc-hh---hHhHHhhhHHHhcCC
Q 012448 337 TLLLLCLPPAARHVIDAAFDRQGH-GK---QLAALHGLANIAGKT 377 (463)
Q Consensus 337 ~~L~~~~~~~~~~~l~~~~~~~~~-~~---k~r~L~al~~Il~~~ 377 (463)
-++.+..++..+...... +. |-+|.|-+...+...
T Consensus 882 ------vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 882 ------VSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT 920 (982)
T ss_pred ------hhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc
Confidence 134566666666666553 33 888999999988854
No 139
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=83.52 E-value=18 Score=38.96 Aligned_cols=167 Identities=13% Similarity=0.025 Sum_probs=107.5
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhch-HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHY-MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA 118 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~-~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~ 118 (463)
-+..|+.-++.-|-....+-++.-+|+.|+.+-.-+.++..- ..-+.-+=...-+...++.+.-++.+.+|+ .+ .
T Consensus 181 ~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS---ee-t 256 (832)
T KOG3678|consen 181 GLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHS---EE-T 256 (832)
T ss_pred hHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhh---HH-H
Confidence 345555555543311122445555888887766555444332 222222233345667788889999999998 66 8
Q ss_pred HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC--CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448 119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN--GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL 196 (463)
Q Consensus 119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~--~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i 196 (463)
.+-++..+.+..++.-....+..+-+.++-+|.+++-|.- +-..++....-+ -|-.+.-+.|+..|+-+|-.++.|
T Consensus 257 ~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~E--WLF~LA~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 257 CQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAE--WLFPLAFSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhh--hhhhhhcchHHHHHHHHHHHHhhh
Confidence 8888899999999987777788899999999999987752 112334333333 344466778999999999888888
Q ss_pred HhcCHHHHHHHHhhccH
Q 012448 197 FSVSRSVASVIFKANLL 213 (463)
Q Consensus 197 a~~S~~~~~~v~~sgl~ 213 (463)
++.. |.-..|..||-+
T Consensus 335 at~K-E~E~~VrkS~Tl 350 (832)
T KOG3678|consen 335 ATNK-EVEREVRKSGTL 350 (832)
T ss_pred hhhh-hhhHHHhhccch
Confidence 7653 333344445543
No 140
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=83.37 E-value=2.7 Score=28.30 Aligned_cols=39 Identities=18% Similarity=0.055 Sum_probs=34.3
Q ss_pred HHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHH
Q 012448 201 RSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELA 240 (463)
Q Consensus 201 ~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa 240 (463)
++....+.+.|.++.++..+.+ +|.=++.+++..|+.|+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKS-EDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHc
Confidence 3466788899999999999997 89999999999999876
No 141
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=83.12 E-value=57 Score=33.21 Aligned_cols=99 Identities=20% Similarity=0.162 Sum_probs=63.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhh--ccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC--
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLI--DYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP-- 157 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~--~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~-- 157 (463)
......+|.+-+...|+.++..+.+++.+.- ..+.+. ...++..+..|+.-+...=..-|..++.-++=+-
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-----~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-----LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence 3455667788889999999999999997662 222222 2257888899998776544555666666555441
Q ss_pred -CCccccccCCCcchhhHhhHhhcCCchhHHH
Q 012448 158 -NGIDIIFPADNKAATDLGNLVAQCSSLGRVR 188 (463)
Q Consensus 158 -~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~R 188 (463)
...+.+|. ...+ .|++.+...++.++.|
T Consensus 120 g~~~~ei~~-~~~~--~L~~~l~d~s~~~~~R 148 (309)
T PF05004_consen 120 GEDSEEIFE-ELKP--VLKRILTDSSASPKAR 148 (309)
T ss_pred CccHHHHHH-HHHH--HHHHHHhCCccchHHH
Confidence 12244454 3444 7777777666555554
No 142
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=82.68 E-value=5 Score=44.10 Aligned_cols=129 Identities=14% Similarity=0.117 Sum_probs=82.1
Q ss_pred cchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHh
Q 012448 55 PGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDC 134 (463)
Q Consensus 55 ~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~ 134 (463)
...+..++..+-+.|+ +-+++...-.+.+..-.+..+..||.-|++.|-.+.+++ .. .+. .+.-.|+++
T Consensus 36 ~k~K~Laaq~I~kffk--~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~---~~-~v~-----kvaDvL~Ql 104 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFK--HFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN---PE-HVS-----KVADVLVQL 104 (556)
T ss_dssp HHHHHHHHHHHHHHHC--C-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T-----T--HH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--hChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH---HH-HHh-----HHHHHHHHH
Confidence 5667778889999965 667788888899999999999999999999998887754 22 221 234456678
Q ss_pred hcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh---cCCchhHHHHHHHH-HHHHhcCHHH
Q 012448 135 LINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA---QCSSLGRVRVLSLI-VKLFSVSRSV 203 (463)
Q Consensus 135 l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~---~~~~~vR~Rv~el~-v~ia~~S~~~ 203 (463)
|+.+|......+-++|..+.+..+ .+.+. .|-..+. ..++.+|-|++..+ .++.....+.
T Consensus 105 L~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~--~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~ 168 (556)
T PF05918_consen 105 LQTDDPVELDAVKNSLMSLLKQDP-------KGTLT--GLFSQIESSKSGDEQVRERALKFLREKLKPLKPEL 168 (556)
T ss_dssp TT---HHHHHHHHHHHHHHHHH-H-------HHHHH--HHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTT
T ss_pred HhcccHHHHHHHHHHHHHHHhcCc-------HHHHH--HHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHH
Confidence 888887777778888887776654 11222 2222333 67899999999877 4444443333
No 143
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=82.20 E-value=92 Score=34.94 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=110.7
Q ss_pred hHHHHHccccCCCCcchHHHHHH---HHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHH
Q 012448 41 LSVILNTLQTKPDVPGLEDTLVV---CLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASC 117 (463)
Q Consensus 41 l~~L~~~L~~~~~~~~~~~~~~~---vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~ 117 (463)
...+++.|++.. |..+..+++ .|.+++++-+--....++..-|-.-|.+.+|.|--..++++.+|..--+..
T Consensus 606 vStiL~~L~~k~--p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~--- 680 (975)
T COG5181 606 VSTILKLLRSKP--PDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFR--- 680 (975)
T ss_pred HHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccc---
Confidence 345677888876 566665555 777777766666677778888999999999999999999999987533211
Q ss_pred HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcc----hhhHhhHhhcCCchhHHHHHHHH
Q 012448 118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKA----ATDLGNLVAQCSSLGRVRVLSLI 193 (463)
Q Consensus 118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~----~~~L~~~~~~~~~~vR~Rv~el~ 193 (463)
.-|- .-.+++|.+.--|.+....|-..-++.+..|++..|.- .++-+ --.|...+.+.|-.+|+.+-+.+
T Consensus 681 ~mqp-Pi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pey-----i~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tf 754 (975)
T COG5181 681 SMQP-PISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEY-----IGVREWMRICFELVDSLKSWNKEIRRNATETF 754 (975)
T ss_pred ccCC-chhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCccc-----CCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Confidence 1111 12378898888999999999999999999999887641 01100 00223345566667777776666
Q ss_pred HHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHH
Q 012448 194 VKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTL 227 (463)
Q Consensus 194 v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvL 227 (463)
--|++.= =-..++..+++.|+- .|--
T Consensus 755 G~Is~ai-------GPqdvL~~LlnnLkv-qeRq 780 (975)
T COG5181 755 GCISRAI-------GPQDVLDILLNNLKV-QERQ 780 (975)
T ss_pred hhHHhhc-------CHHHHHHHHHhcchH-HHHH
Confidence 6665431 112455566666665 4443
No 144
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=82.09 E-value=29 Score=39.35 Aligned_cols=179 Identities=15% Similarity=0.080 Sum_probs=110.6
Q ss_pred ccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhh-----cCCchHHHHHH
Q 012448 72 KYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCL-----INGNEEVATAS 146 (463)
Q Consensus 72 ~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l-----~d~d~~va~~A 146 (463)
.+|++....|.++.-.|+...-...+-+..... ++.+.+- .|+++.+..-+ +++++.-++++
T Consensus 367 nDp~eyirry~df~d~g~spdlaal~fl~~~~s----Krke~Tf---------qgiLsf~~sil~qsaa~psn~dnarq~ 433 (970)
T COG5656 367 NDPDEYIRRYYDFFDNGLSPDLAALFFLIISKS----KRKEETF---------QGILSFLLSILGQSAATPSNIDNARQA 433 (970)
T ss_pred cCHHHHHHHhcchhcCCCChhHHHHHHHHHHhc----ccchhhh---------hhHHHHHHHHHhcccCCCCccccHHHH
Confidence 367777777888888887655444443332221 1221111 16677776665 34444455554
Q ss_pred HHHHHHHh-------CCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhh
Q 012448 147 MDAIKKLA-------GFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEG 219 (463)
Q Consensus 147 ~~~L~~la-------k~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~e 219 (463)
-.+|..+| +.+|. ..++.--.+. ++.+....+.-.+|-|+|+.+..+ |.|--....-+.+++...++
T Consensus 434 egalr~lasi~s~itk~sp~-an~me~fiv~--hv~P~f~s~ygfL~Srace~is~~---eeDfkd~~ill~aye~t~nc 507 (970)
T COG5656 434 EGALRLLASIKSFITKMSPA-ANVMEYFIVN--HVIPAFRSNYGFLKSRACEFISTI---EEDFKDNGILLEAYENTHNC 507 (970)
T ss_pred hhHHHHHHHHHHHhccCchH-HHHHHHHHHH--HhhHhhcCcccchHHHHHHHHHHH---HHhcccchHHHHHHHHHHHH
Confidence 44444333 22221 1111111122 444555678889999999999888 67777777777889999999
Q ss_pred cCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhc--chHHHHHHHhcccccchh
Q 012448 220 VSKKNDTLETLSILELLYELAEIQHSAEFLSRT--TLLQLLCSLIGNSATETI 270 (463)
Q Consensus 220 L~~~~DvLv~lnalell~eLa~t~~g~~~L~~~--gi~~~L~~~i~~~~~dpl 270 (463)
+++ ++.=|++.|+--+.-+-...+--.-+... +.+++|...-+.-+-||+
T Consensus 508 l~n-n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~L 559 (970)
T COG5656 508 LKN-NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPL 559 (970)
T ss_pred Hhc-CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHH
Confidence 999 99999999887777666544333222222 778888887777788998
No 145
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=81.97 E-value=25 Score=35.92 Aligned_cols=179 Identities=17% Similarity=0.113 Sum_probs=114.0
Q ss_pred HHHHccccCCCCcc-hHHHHHHHHHHHhccccccchhhch---HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448 43 VILNTLQTKPDVPG-LEDTLVVCLERIFKTKYGASLIPHY---MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA 118 (463)
Q Consensus 43 ~L~~~L~~~~~~~~-~~~~~~~vL~~il~~~~~~~l~~~~---~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~ 118 (463)
.|-.||+..= |. .-..+=+|-+.+|+...+..+.+.+ .+=|-.-+.+.+-.||-..++-+.+..-.- .. .
T Consensus 58 rLaqCL~P~L--PsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL---~~-~ 131 (307)
T PF04118_consen 58 RLAQCLNPAL--PSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPL---GP-A 131 (307)
T ss_pred HHHHhcCCCC--ChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCc---cH-H
Confidence 4567777654 32 3334444777777777776665543 444455567778899999888888766433 11 1
Q ss_pred HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448 119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS 198 (463)
Q Consensus 119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~ 198 (463)
...+. .+++..++-.+-|+..++-....+.|..+...- +.+.+. +-|= ...-.++.+|.=++..+.+-..
T Consensus 132 L~p~l-~~li~slLpGLede~sE~~~~~~~ll~~l~~~v-------~~~~F~-~~lw-l~ii~sp~~Rl~al~~l~~~l~ 201 (307)
T PF04118_consen 132 LRPCL-KGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAV-------GDKYFW-QCLW-LCIITSPSRRLGALNYLLRRLP 201 (307)
T ss_pred HHHHH-HHHHHHhccccccCCchHHHHHHHHHHHHHHhc-------ChhHHH-HHHH-HHHhcCcchhHHHHHHHHHhCC
Confidence 11222 267777778888999999999999999987442 222211 1222 3344788888888887766544
Q ss_pred c--------CHHHHHHHHh--hccH-HHHHhhcCCCCcHHHHHhHHHHHHH
Q 012448 199 V--------SRSVASVIFK--ANLL-TLLEEGVSKKNDTLETLSILELLYE 238 (463)
Q Consensus 199 ~--------S~~~~~~v~~--sgl~-~~ll~eL~~~~DvLv~lnalell~e 238 (463)
. +.+..+.+.. .|++ ..+...|.| +|+|||-++++++-.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D-~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 202 KFQNDELSLSSEEQEYCLGPDPGLLVRALCACLED-ENILVQRGFLDLLLS 251 (307)
T ss_pred cccccccccchHHHHHhcCCCccHHHHHHHHHhCC-chHHHHHHHHHHHHH
Confidence 3 2333344432 4554 777788888 899999988888765
No 146
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.06 E-value=3.5 Score=46.50 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=29.3
Q ss_pred hHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHH
Q 012448 173 DLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIF 208 (463)
Q Consensus 173 ~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~ 208 (463)
.|.+......+.+|++|+.+.+++-..+.+-+...+
T Consensus 508 ~laksFs~E~~evKlQILnL~aKLyl~~~~~~kll~ 543 (968)
T KOG1060|consen 508 KLAKSFSDEGDEVKLQILNLSAKLYLTNIDQTKLLV 543 (968)
T ss_pred HHHHhhccccchhhHHHHHhhhhheEechhhHHHHH
Confidence 666667788999999999999999888877765543
No 147
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=80.36 E-value=19 Score=40.50 Aligned_cols=125 Identities=10% Similarity=0.128 Sum_probs=86.2
Q ss_pred HHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHH-HhhcCCCHHHHHHHHHHHHHHHhCCch
Q 012448 35 FLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQ-VGLTADSHSVKRLACKTVTCLLEDSDL 113 (463)
Q Consensus 35 ~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~-~gL~h~~~~Vr~Lal~~l~~i~~~~~~ 113 (463)
.+....+|.|+.|+++.+ ....+.+..++-.++...+...+-+.+.+-|- -+++|.+..||.-++-.++.++++-
T Consensus 385 ~~~~~IlplL~~S~~~~~--~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l-- 460 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSD--VQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL-- 460 (700)
T ss_pred HHHHHHHHHHHHHhcCcc--hhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH--
Confidence 344557889999999765 66677777788888877776655555443332 2889999999999999999998655
Q ss_pred hHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHh-CCCCCccccccCCCcc
Q 012448 114 EASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLA-GFPNGIDIIFPADNKA 170 (463)
Q Consensus 114 ~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~la-k~~~~l~~l~~~~~~~ 170 (463)
+. . .++ +.+..+..|++-.|..+.-.-+.+...+. .++.| +.+....+++
T Consensus 461 -D~--~-~v~--d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlP 511 (700)
T KOG2137|consen 461 -DK--A-AVL--DELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLP 511 (700)
T ss_pred -HH--H-HhH--HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhh
Confidence 22 1 111 45677778998888888877777777664 34444 2233445555
No 148
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=79.55 E-value=4.4 Score=35.57 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=56.3
Q ss_pred cHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhc
Q 012448 212 LLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLL 283 (463)
Q Consensus 212 l~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~ 283 (463)
++..|+.-|..++|..+..-|+-=|.++++ .|.|.+.+.+-|+=..+++.+.. +||-+|..|+++...+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h--~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH--EDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC--CCHHHHHHHHHHHHHHH
Confidence 556777777554788888888888999999 99999999999999999999986 78888988888766543
No 149
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=78.58 E-value=20 Score=33.62 Aligned_cols=109 Identities=16% Similarity=0.211 Sum_probs=77.8
Q ss_pred cHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHH
Q 012448 127 IYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASV 206 (463)
Q Consensus 127 l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~ 206 (463)
-++.|+.+..+++..++..|+..++-+.+. |+ +-|...++ .|..+..++++.+|-|++.+...+...-+...+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~q--GL--vnP~~cvp--~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQ--GL--VNPKQCVP--TLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhc--CC--CChHHHHh--HhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 356677888899999999999999999875 43 23444566 6665778899999999999999999998988888
Q ss_pred HHhhccHHHHHhhcCCCCcHHH-----HHhHHHHHHHHHh
Q 012448 207 IFKANLLTLLEEGVSKKNDTLE-----TLSILELLYELAE 241 (463)
Q Consensus 207 v~~sgl~~~ll~eL~~~~DvLv-----~lnalell~eLa~ 241 (463)
....|+-...-....-..|... ....+--++++..
T Consensus 83 ~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 83 RYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 7777765443332211123332 4555555666655
No 150
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.54 E-value=84 Score=32.27 Aligned_cols=221 Identities=16% Similarity=0.152 Sum_probs=133.1
Q ss_pred cCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHH
Q 012448 38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS 116 (463)
Q Consensus 38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~ 116 (463)
.-+++.++..++... + .++++..|-.+++..... .+.+.+..+++.-+..|....-.+.|-.+.++.+.. +.
T Consensus 43 ~~~lk~l~qL~~~~~--~--~~~a~~alVnlsq~~~l~~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~---~~ 115 (353)
T KOG2973|consen 43 EALLKDLTQLLKDLD--P--AEPAATALVNLSQKEELRKKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSRDD---DE 115 (353)
T ss_pred hhhHHHHHHHccCcc--c--ccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhccCc---hH
Confidence 345666777776543 2 455555555554433222 233447778888888887777777777888876655 33
Q ss_pred HHHHHhh------ccCcHHHHHHhhcCCchHHHHH----HHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhH
Q 012448 117 CALQLLI------DYEIYPLLLDCLINGNEEVATA----SMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGR 186 (463)
Q Consensus 117 ~~~~~~~------~~~l~~~li~~l~d~d~~va~~----A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR 186 (463)
++.++. +.++..+.. ...|+... +.. -+.++.+|++.+.|-..+..+..++++.|.+. .+.++.+|
T Consensus 116 -~~~ll~~~~~~~~~~lm~l~~-~~~d~~~n-~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vR 191 (353)
T KOG2973|consen 116 -VAALLTNLTEKKDSGLMRLAR-AFCDKSYN-AYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVR 191 (353)
T ss_pred -HHHHHHhcccccccchHHHHH-HHhCcccc-cccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcc-cccchhhh
Confidence 333321 234555444 44444444 222 34678889999988887778887776677743 33677777
Q ss_pred HHHHH-HHHHHH---hcCHHHHHHHHhhccHHHHHh---------------------hcC---C-CCcHHHHHhHHHHHH
Q 012448 187 VRVLS-LIVKLF---SVSRSVASVIFKANLLTLLEE---------------------GVS---K-KNDTLETLSILELLY 237 (463)
Q Consensus 187 ~Rv~e-l~v~ia---~~S~~~~~~v~~sgl~~~ll~---------------------eL~---~-~~DvLv~lnalell~ 237 (463)
+--+. .+-+.+ ++..-++. .+.++++.++. -|. . .+|.-++.--+|.|.
T Consensus 192 r~GvagtlkN~cFd~~~h~~lL~--e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~ 269 (353)
T KOG2973|consen 192 RGGVAGTLKNCCFDAKLHEVLLD--ESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALL 269 (353)
T ss_pred ccchHHHHHhhhccchhHHHHhc--chHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHH
Confidence 64332 222211 11122222 22344444432 222 1 168888999999999
Q ss_pred HHHhhHHHHHHHHhcchHHHHHHHhcccccchhhh
Q 012448 238 ELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILR 272 (463)
Q Consensus 238 eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r 272 (463)
.|+.|.+|.+++-..|+-..|-..=.+ .+||-.+
T Consensus 270 lLcaT~~GRe~lR~kgvYpilRElhk~-e~ded~~ 303 (353)
T KOG2973|consen 270 LLCATRAGREVLRSKGVYPILRELHKW-EEDEDIR 303 (353)
T ss_pred HHHhhhHhHHHHHhcCchHHHHHHhcC-CCcHHHH
Confidence 999999999999999988777555444 4777643
No 151
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=78.25 E-value=1.1e+02 Score=33.23 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=104.7
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccC-cHHHHHHhhcCCchHHHHHHHHHHHHH-hCCCC
Q 012448 82 MPFVQVGLTA-DSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYE-IYPLLLDCLINGNEEVATASMDAIKKL-AGFPN 158 (463)
Q Consensus 82 ~~~l~~gL~h-~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~-l~~~li~~l~d~d~~va~~A~~~L~~l-ak~~~ 158 (463)
...+..-|.. .++..|.+|++-|+.+++++ .+.+..+.+ .+.-++.+=.|.+-+|.+.|......+ +.|.|
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q------~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P 404 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQ------PARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP 404 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhc------hHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc
Confidence 3445555555 79999999999999999988 445555555 455677888999999999998875555 55554
Q ss_pred CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH-hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHH
Q 012448 159 GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF-SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLY 237 (463)
Q Consensus 159 ~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia-~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~ 237 (463)
...++ .+.+.+...|+..-.=+.-+..+++ +.+.|.+.-++. .+.|-++.-.++ .--.||+.|+=||.
T Consensus 405 ~~~I~---------~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-diaP~~iqay~S-~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 405 LQCIV---------NISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP-DIAPCVIQAYDS-TSSTVRKTAVFCLV 473 (516)
T ss_pred hhHHH---------HHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh-hhhhHHHHHhcC-chHHhhhhHHHhHH
Confidence 32221 2333444455554444554555555 356666665553 789999999998 88899999999999
Q ss_pred HHHh--h-HHHHHHHHh
Q 012448 238 ELAE--I-QHSAEFLSR 251 (463)
Q Consensus 238 eLa~--t-~~g~~~L~~ 251 (463)
.+.. . +..--||.+
T Consensus 474 amv~~vG~~~mePhL~~ 490 (516)
T KOG2956|consen 474 AMVNRVGMEEMEPHLEQ 490 (516)
T ss_pred HHHHHHhHHhhhhHhhh
Confidence 8877 3 444455553
No 152
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=78.06 E-value=15 Score=41.61 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=52.9
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhc-CCchHHHHHHHHHHHHHhCCCC
Q 012448 81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLI-NGNEEVATASMDAIKKLAGFPN 158 (463)
Q Consensus 81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~-d~d~~va~~A~~~L~~lak~~~ 158 (463)
+.+.|..++..+. -|--++.-++.++++. .. -.-.+.++.++..|+.||. |.++.+-..|+.+|..+--+-|
T Consensus 71 ~~~~l~~~~~~~~--~Rl~~L~Ll~~~v~~q---p~-~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 71 LFDKLNDYFVKPS--YRLQALTLLGHFVRSQ---PP-WLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred HHHHHHHHHcCch--hHHHHHHHHHHHHhcC---Cc-hHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 4455566666554 5556666789999977 55 5566789999999999886 6677777889999888865554
No 153
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=77.84 E-value=31 Score=38.21 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhc---cccc--cchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHH
Q 012448 58 EDTLVVCLERIFK---TKYG--ASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLL 132 (463)
Q Consensus 58 ~~~~~~vL~~il~---~~~~--~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li 132 (463)
-+-+.-.|.+.+. +..| ..+.++..-.+.+|+++++..||-=+|+-+.++..... + .-+-+- ++++.-+.
T Consensus 64 ~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~---e-IDe~l~-N~L~ekl~ 138 (885)
T COG5218 64 PDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR---E-IDEVLA-NGLLEKLS 138 (885)
T ss_pred HHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc---h-HHHHHH-HHHHHHHH
Confidence 3444445555554 2222 25677788999999999999999999999999887662 2 222222 36667777
Q ss_pred HhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHh-hcCCchhHHHHHH
Q 012448 133 DCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLV-AQCSSLGRVRVLS 191 (463)
Q Consensus 133 ~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~-~~~~~~vR~Rv~e 191 (463)
..+-|.+..|...|..+|.++-.... ++.....+.|+..+ ..+++.||+-++-
T Consensus 139 ~R~~DRE~~VR~eAv~~L~~~Qe~~~------neen~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 139 ERLFDREKAVRREAVKVLCYYQEMEL------NEENRIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred HHHhcchHHHHHHHHHHHHHHHhccC------ChHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 89999999999999999999864432 11111122344232 2567888887654
No 154
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=77.62 E-value=3.2 Score=37.89 Aligned_cols=133 Identities=23% Similarity=0.226 Sum_probs=87.2
Q ss_pred chHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHH-hhccHHHHH
Q 012448 139 NEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIF-KANLLTLLE 217 (463)
Q Consensus 139 d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~-~sgl~~~ll 217 (463)
..++...|.-++.++- +..+.-|...... .+...+...+..-..+++.++..+.-.-++....+. ..|+++.++
T Consensus 18 ~~~~r~~a~v~l~k~l---~~~~~~~~~~~~~--~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 18 PEEVRSHALVILSKLL---DAAREEFKEKISD--FIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLL 92 (157)
T ss_dssp SCCHHHHHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHH
T ss_pred CHhHHHHHHHHHHHHH---HHhHHHHHHHHHH--HHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHH
Confidence 3445555666665552 1011112222222 455455555666899999999999999999887776 567778888
Q ss_pred hhcC-CCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhh
Q 012448 218 EGVS-KKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIM 277 (463)
Q Consensus 218 ~eL~-~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ail 277 (463)
.... .++|..++..++|+|.-=+..+..+.|+.+.|+ +-|-+...+.++|.-+|-+|.+
T Consensus 93 ~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~-~~L~~~~~~~~~~~~ir~~A~v 152 (157)
T PF11701_consen 93 PLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYV-SWLKELYKNSKDDSEIRVLAAV 152 (157)
T ss_dssp HHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCH-HHHHHHTTTCC-HH-CHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHH-HHHHHHHccccchHHHHHHHHH
Confidence 7777 239999999999999999998888888887764 4555555555544413545544
No 155
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=77.12 E-value=8.1 Score=44.00 Aligned_cols=119 Identities=12% Similarity=0.167 Sum_probs=72.6
Q ss_pred HHhhcCCCH---HHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC---C
Q 012448 86 QVGLTADSH---SVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN---G 159 (463)
Q Consensus 86 ~~gL~h~~~---~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~---~ 159 (463)
....++.|. .++.+..+.++|+.+-. +.. +.+++.|.+....++.|+-.|+..+.+.|.++|+.+....- +
T Consensus 484 ~~~~~~~N~~~~~~~~~~~~il~rls~~~--~~~-L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~ 560 (727)
T PF12726_consen 484 DPAKTQFNKSLGQITDLISQILERLSDFD--PSH-LKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEA 560 (727)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHH-HHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHH
Confidence 334444444 34556677778877654 244 88999999999999999999999999999999999865331 3
Q ss_pred ccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHh
Q 012448 160 IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFK 209 (463)
Q Consensus 160 l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~ 209 (463)
++.++..+.-. .|..+...-.-..++..|+=+-.+-+..-|..+...+
T Consensus 561 i~~ll~~~~~~--tL~ai~~~l~~~~~~~~~~p~pr~vr~~~DIi~~Lcd 608 (727)
T PF12726_consen 561 IQALLQSNFSP--TLSAINWSLRQLTKLKFFEPCPRMVRCLMDIIEVLCD 608 (727)
T ss_pred HHHHHHHhHHH--HHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHcC
Confidence 34444433333 3332222223333444444444444444444444443
No 156
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=77.08 E-value=6.5 Score=42.14 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=62.3
Q ss_pred HHHHHHHhCCCCCccccccCCCcchhhHhhHh----------hcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHH
Q 012448 147 MDAIKKLAGFPNGIDIIFPADNKAATDLGNLV----------AQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLL 216 (463)
Q Consensus 147 ~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~----------~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~l 216 (463)
..+|+.+++.+.|++.++..+.+. .|.+.. ...+..+..=++-|++++-=.|+.+-+.+++.|..+.+
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~--~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLS--TLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHH--HHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 567888888888888888877776 555343 34578889999999999999999999999999999999
Q ss_pred HhhcCC
Q 012448 217 EEGVSK 222 (463)
Q Consensus 217 l~eL~~ 222 (463)
...|+.
T Consensus 80 ~~~Lk~ 85 (446)
T PF10165_consen 80 CERLKN 85 (446)
T ss_pred HHHHHc
Confidence 999887
No 157
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=75.73 E-value=82 Score=36.54 Aligned_cols=189 Identities=13% Similarity=0.147 Sum_probs=127.3
Q ss_pred HHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhc----CCCHHHHHHHHHHHHHHH
Q 012448 33 KKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLT----ADSHSVKRLACKTVTCLL 108 (463)
Q Consensus 33 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~----h~~~~Vr~Lal~~l~~i~ 108 (463)
.+++++++-...-.-++. ++++-.+.+..++.++-... -+..+.+...+..+++ ..|-.|-.+++..+.-++
T Consensus 248 ~di~~ki~~~l~t~~~s~--~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia 323 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSK--KWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIA 323 (815)
T ss_pred hhhhhhcChHHHHhhhcc--chHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 344555554444444433 56677777777888886665 3444555555555544 457777778887777777
Q ss_pred hCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHH
Q 012448 109 EDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVR 188 (463)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~R 188 (463)
..- .. ..+-... ++++-++.|++|..-.+--.+.+++..++...+ +.. ..+ .....+.+.|..+|-+
T Consensus 324 ~~l---r~-~~~~~~~-~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-l~~-----~~~--~I~e~lk~knp~~k~~ 390 (815)
T KOG1820|consen 324 KKL---RP-LFRKYAK-NVFPSLLDRLKEKKSELRDALLKALDAILNSTP-LSK-----MSE--AILEALKGKNPQIKGE 390 (815)
T ss_pred Hhc---ch-hhHHHHH-hhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-HHH-----HHH--HHHHHhcCCChhhHHH
Confidence 654 22 2222222 578889999999999999999999999987442 211 112 3333667899999999
Q ss_pred HHHHHHHHHhcCH---HHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 189 VLSLIVKLFSVSR---SVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 189 v~el~v~ia~~S~---~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
...++..-.+... .--+.+ .++.+.++.-..| .|-=||.++.|.+..+.+
T Consensus 391 ~~~~l~r~~~~~~~~~~~~~t~--~~l~p~~~~~~~D-~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 391 CLLLLDRKLRKLGPKTVEKETV--KTLVPHLIKHIND-TDKDVRKAALEAVAAVMK 443 (815)
T ss_pred HHHHHHHHHhhcCCcCcchhhH--HHHhHHHhhhccC-CcHHHHHHHHHHHHHHHH
Confidence 8887777766655 111222 2577888888999 899999999999999988
No 158
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=75.13 E-value=17 Score=33.32 Aligned_cols=59 Identities=10% Similarity=0.134 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 012448 92 DSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLA 154 (463)
Q Consensus 92 ~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~la 154 (463)
.+..+...+++.+..++.+. .+ +...+.+++.+..|+.||..++..+...|+.+|.-++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~---~G-~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTK---YG-LEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSH---HH-HHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccH---HH-HHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 45566777788887766665 55 7788888999999999999999999999999998775
No 159
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=75.03 E-value=45 Score=34.66 Aligned_cols=83 Identities=16% Similarity=0.164 Sum_probs=58.3
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhh-cCCch-HHHHHHHHHHHHHhCCCC
Q 012448 82 MPFVQVGLT-ADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCL-INGNE-EVATASMDAIKKLAGFPN 158 (463)
Q Consensus 82 ~~~l~~gL~-h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l-~d~d~-~va~~A~~~L~~lak~~~ 158 (463)
.+++..||+ .....+|++++-++.....+. . ..+-+..+|...-++.++ ..++. ..+-.++.++.-++....
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~----~-Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~ 97 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADP----Q-FRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL 97 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCH----H-HHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc
Confidence 566777777 346689999999988877654 4 788899999999999999 55555 566666666666666554
Q ss_pred CccccccCCCc
Q 012448 159 GIDIIFPADNK 169 (463)
Q Consensus 159 ~l~~l~~~~~~ 169 (463)
..+.+-+....
T Consensus 98 ~~~l~~~~~~~ 108 (361)
T PF07814_consen 98 NMHLLLDRDSL 108 (361)
T ss_pred chhhhhchhHH
Confidence 44443344443
No 160
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=74.75 E-value=19 Score=39.04 Aligned_cols=88 Identities=15% Similarity=0.203 Sum_probs=67.8
Q ss_pred HHHHHHHHhc-----CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-h-------------HHHHHHHH
Q 012448 190 LSLIVKLFSV-----SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-I-------------QHSAEFLS 250 (463)
Q Consensus 190 ~el~v~ia~~-----S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t-------------~~g~~~L~ 250 (463)
.+++.+|-+. .....+-+.+.++++.++..|....|.-++-||.++|.++.. + +.....|+
T Consensus 36 mDlLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~ 115 (475)
T PF04499_consen 36 MDLLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLV 115 (475)
T ss_pred HHHHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHh
Confidence 3444444443 347788888999999999999876788899999999999976 2 45678899
Q ss_pred hcchHHHHHHHhcc-cccchhhhhhhhh
Q 012448 251 RTTLLQLLCSLIGN-SATETILRSRAIM 277 (463)
Q Consensus 251 ~~gi~~~L~~~i~~-~~~dpl~r~~ail 277 (463)
+...+.+|++.+.+ ....+++..-+++
T Consensus 116 S~~~v~~Ll~~mL~~~~~s~lvn~v~Il 143 (475)
T PF04499_consen 116 SEETVEKLLDIMLNSQGGSSLVNGVSIL 143 (475)
T ss_pred ChHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence 99999999999986 4477776544443
No 161
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=74.59 E-value=24 Score=39.07 Aligned_cols=131 Identities=21% Similarity=0.170 Sum_probs=60.7
Q ss_pred CchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHh-hcCCCCcHHHHHhHHHHHHHHHhhH-HHHHHHHhcchHHHHH
Q 012448 182 SSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEE-GVSKKNDTLETLSILELLYELAEIQ-HSAEFLSRTTLLQLLC 259 (463)
Q Consensus 182 ~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~-eL~~~~DvLv~lnalell~eLa~t~-~g~~~L~~~gi~~~L~ 259 (463)
....|.-.++++.... +.+++..+ .+.+.. ++. ..-+.++|..+..+. + .....+..+.
T Consensus 377 ~~~~r~~~lDal~~aG--T~~av~~i-----~~~I~~~~~~-------~~ea~~~l~~l~~~~~~-----Pt~e~l~~l~ 437 (618)
T PF01347_consen 377 KEQARKIFLDALPQAG--TNPAVKFI-----KDLIKSKKLT-------DDEAAQLLASLPFHVRR-----PTEELLKELF 437 (618)
T ss_dssp -HHHHHHHHHHHHHH---SHHHHHHH-----HHHHHTT-S--------HHHHHHHHHHHHHT----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--CHHHHHHH-----HHHHHcCCCC-------HHHHHHHHHHHHhhcCC-----CCHHHHHHHH
Confidence 3457888888888765 34444432 233332 121 223445555554421 1 1234455555
Q ss_pred HHhccc--ccchhhhhhhhhHhhhhccccccch----h----cchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhh
Q 012448 260 SLIGNS--ATETILRSRAIMISGRLLSKDDSHM----F----IDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQI 329 (463)
Q Consensus 260 ~~i~~~--~~dpl~r~~aili~g~i~~f~~~~~----~----~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~I 329 (463)
+++... ..+|.++.-+++..|-+.-...... + ......+..+.+.+.+-+..+..|...+-+++-+||++
T Consensus 438 ~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~ 517 (618)
T PF01347_consen 438 ELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL 517 (618)
T ss_dssp HHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc
Confidence 555432 3566666555555554443100000 0 00102332333333322345677889999999999999
Q ss_pred cC
Q 012448 330 GS 331 (463)
Q Consensus 330 gs 331 (463)
|.
T Consensus 518 g~ 519 (618)
T PF01347_consen 518 GH 519 (618)
T ss_dssp T-
T ss_pred CC
Confidence 96
No 162
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.42 E-value=3.7 Score=45.58 Aligned_cols=165 Identities=15% Similarity=0.119 Sum_probs=118.8
Q ss_pred ccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHH
Q 012448 21 AYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLA 100 (463)
Q Consensus 21 a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~La 100 (463)
|..|..+-|+....++...-...++..|.++- =+.++++++-+.++ +...+.++....+||+.-++.....||..+
T Consensus 355 advpsee~d~~~~siI~sGACGA~VhGlEDEf--~EVR~AAV~Sl~~L--a~ssP~FA~~aldfLvDMfNDE~~~VRL~a 430 (823)
T KOG2259|consen 355 ADVPSEEDDEEEESIIPSGACGALVHGLEDEF--YEVRRAAVASLCSL--ATSSPGFAVRALDFLVDMFNDEIEVVRLKA 430 (823)
T ss_pred ccCchhhccccccccccccccceeeeechHHH--HHHHHHHHHHHHHH--HcCCCCcHHHHHHHHHHHhccHHHHHHHHH
Confidence 55666677777888888888899999998654 45788889988888 666777888899999999999999999999
Q ss_pred HHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC--CccccccCCCcchhhHhhHh
Q 012448 101 CKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN--GIDIIFPADNKAATDLGNLV 178 (463)
Q Consensus 101 l~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~--~l~~l~~~~~~~~~~L~~~~ 178 (463)
++++..|..|. ..+.+.++.+..||-|-...+-...-+.|+ .++.+. +++..+ . .-|+ .+
T Consensus 431 i~aL~~Is~~l----------~i~eeql~~il~~L~D~s~dvRe~l~elL~-~~~~~d~~~i~m~v-----~-~lL~-~L 492 (823)
T KOG2259|consen 431 IFALTMISVHL----------AIREEQLRQILESLEDRSVDVREALRELLK-NARVSDLECIDMCV-----A-HLLK-NL 492 (823)
T ss_pred HHHHHHHHHHh----------eecHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCCCcHHHHHHHH-----H-HHHH-Hh
Confidence 99999987764 235577888999999988888776655554 444432 112111 1 0122 11
Q ss_pred hcCCchhHHHHHHHHHHHHhcCHHHHHHHH
Q 012448 179 AQCSSLGRVRVLSLIVKLFSVSRSVASVIF 208 (463)
Q Consensus 179 ~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~ 208 (463)
..=+.=|=-+|.|+.+|++...-.+-.+.
T Consensus 493 -~kyPqDrd~i~~cm~~iGqnH~~lv~s~m 521 (823)
T KOG2259|consen 493 -GKYPQDRDEILRCMGRIGQNHRRLVLSNM 521 (823)
T ss_pred -hhCCCCcHHHHHHHHHHhccChhhHHHHH
Confidence 12222233688899999998887766655
No 163
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=74.04 E-value=7.7 Score=32.35 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=55.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448 83 PFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN 158 (463)
Q Consensus 83 ~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~ 158 (463)
+....-|+.|.+-||.-++..+.+++++.+. . . ..-+.++.+....|.|+|.-|=-.|++.|..++...|
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~--~-~---~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSE--P-V---IDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCc--c-h---hhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 3445567899999999999999999998730 1 1 1124678888899999999999999999999986544
No 164
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=74.02 E-value=16 Score=43.36 Aligned_cols=194 Identities=16% Similarity=0.090 Sum_probs=116.6
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhc--cccccchhhchHHHHHHhhcCC-----CHHHHHHHHHHHHHHHhCCc
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFK--TKYGASLIPHYMPFVQVGLTAD-----SHSVKRLACKTVTCLLEDSD 112 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~--~~~~~~l~~~~~~~l~~gL~h~-----~~~Vr~Lal~~l~~i~~~~~ 112 (463)
.||=++-|+++.. ...+-++-..|.+++. ..-+..-+.-+.++|-..|+|- ...||..-++.|+.++....
T Consensus 463 VlPY~v~l~~Ds~--a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~ 540 (1431)
T KOG1240|consen 463 VLPYFVHLLMDSE--ADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY 540 (1431)
T ss_pred hHHHHHHHhcCch--HHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH
Confidence 3777888887654 3333333334444432 2223222223456666666554 44577776666665554221
Q ss_pred hhHHHHHHHhhcc-------------------------CcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCC
Q 012448 113 LEASCALQLLIDY-------------------------EIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPAD 167 (463)
Q Consensus 113 ~~~~~~~~~~~~~-------------------------~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~ 167 (463)
.=-. ..+.+.++ .+-..+...+.|++.-|+++=++.|..++.+- |-+. -+.-
T Consensus 541 rFle-~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF-Gk~k-sND~ 617 (1431)
T KOG1240|consen 541 RFLE-LTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFF-GKEK-SNDV 617 (1431)
T ss_pred HHHH-HHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-hhcc-cccc
Confidence 0001 22221111 22334556788999999999999999988664 2111 1112
Q ss_pred CcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHH
Q 012448 168 NKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQH 244 (463)
Q Consensus 168 ~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~ 244 (463)
.++ +|-..+..+|..+|.-.++-++-++-- .=..-++.+++|.+..-|.| .-..|-.+|++.|.-|.+..+
T Consensus 618 iLs--hLiTfLNDkDw~LR~aFfdsI~gvsi~---VG~rs~seyllPLl~Q~ltD-~EE~Viv~aL~~ls~Lik~~l 688 (1431)
T KOG1240|consen 618 ILS--HLITFLNDKDWRLRGAFFDSIVGVSIF---VGWRSVSEYLLPLLQQGLTD-GEEAVIVSALGSLSILIKLGL 688 (1431)
T ss_pred hHH--HHHHHhcCccHHHHHHHHhhccceEEE---EeeeeHHHHHHHHHHHhccC-cchhhHHHHHHHHHHHHHhcc
Confidence 344 666677788999999989887755421 11111344799999999999 999999999999998887533
No 165
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=73.87 E-value=21 Score=39.62 Aligned_cols=108 Identities=18% Similarity=0.135 Sum_probs=80.3
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc
Q 012448 81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI 160 (463)
Q Consensus 81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l 160 (463)
+.+.|..-.+.|+..|+.-.++++....+..+ . ...--+ +-+.|++-+.+.|.|..-.+.|+++++-|+-..+|.
T Consensus 801 VlP~lm~dY~TPe~nVQnGvLkam~fmFeyig---~-~s~dYv-y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt 875 (975)
T COG5181 801 VLPTLMSDYETPEANVQNGVLKAMCFMFEYIG---Q-ASLDYV-YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT 875 (975)
T ss_pred hHHHHHhcccCchhHHHHhHHHHHHHHHHHHH---H-HHHHHH-HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc
Confidence 47888899999999999999999998877552 1 221111 257899999999999999999999999999888765
Q ss_pred cccccCCCcchhhHh----hHhhcCCchhHHHHHHHHHHHHh
Q 012448 161 DIIFPADNKAATDLG----NLVAQCSSLGRVRVLSLIVKLFS 198 (463)
Q Consensus 161 ~~l~~~~~~~~~~L~----~~~~~~~~~vR~Rv~el~v~ia~ 198 (463)
- +.++. .+|. +.+...++.+-.|+.|.+=.++.
T Consensus 876 g---~eda~--IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~ 912 (975)
T COG5181 876 G---DEDAA--IHLLNLLWPNILEPSPHVIQSFDEGMESFAT 912 (975)
T ss_pred c---cHHHH--HHHHHHhhhhccCCCcHHHHHHHHHHHHHHH
Confidence 2 11121 1333 34457889999999998866654
No 166
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=73.56 E-value=1.3e+02 Score=32.04 Aligned_cols=254 Identities=13% Similarity=0.056 Sum_probs=152.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID 161 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~ 161 (463)
-.+...-|...+.-.-+...+-+..++.......+ ..+.-+-.+.+..+++.. ....--..|+..|..+.+.++--.
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~-~~e~~~~~~~l~~~l~~~--~~~~~~~~~~rcLQ~ll~~~eyR~ 192 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKME-LSELDVYKGFLKEQLQSS--TNNDYIQFAARCLQTLLRVDEYRY 192 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHhcCcchhh
Confidence 44556667778888888777888877765432222 223333333444333332 333355678889999999987666
Q ss_pred ccccCCCcchhhHhhHh--hcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHH
Q 012448 162 IIFPADNKAATDLGNLV--AQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYEL 239 (463)
Q Consensus 162 ~l~~~~~~~~~~L~~~~--~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eL 239 (463)
.++.++... .|...+ .+++-.+.++.+.|+-.+. -++..++.+...++++.+..-++.+.=.=|--=++-+++.+
T Consensus 193 ~~v~adg~~--~l~~~l~s~~~~~QlQYqsifciWlLt-Fn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nl 269 (442)
T KOG2759|consen 193 AFVIADGVS--LLIRILASTKCGFQLQYQSIFCIWLLT-FNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNL 269 (442)
T ss_pred eeeecCcch--hhHHHHhccCcchhHHHHHHHHHHHhh-cCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776 555455 3556667777776666655 78888899999999999988887743344444466677777
Q ss_pred HhhH-------HHHHHHHhcchHHHHHHHhcccccchhhh-----hhhhhH------hhh--hcc--ccccchh------
Q 012448 240 AEIQ-------HSAEFLSRTTLLQLLCSLIGNSATETILR-----SRAIMI------SGR--LLS--KDDSHMF------ 291 (463)
Q Consensus 240 a~t~-------~g~~~L~~~gi~~~L~~~i~~~~~dpl~r-----~~aili------~g~--i~~--f~~~~~~------ 291 (463)
..+. .-+.-++..++...+-.+-...=+|+... ....|- ++| |.. .+|.+.|
T Consensus 270 l~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~ 349 (442)
T KOG2759|consen 270 LDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKS 349 (442)
T ss_pred hccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccc
Confidence 7644 55555666666665544433322444311 111111 111 111 0122222
Q ss_pred -------cchhhhhhhHHHHHHHhccccC-CChhhhhHHHHHHHhhcC-CHHHHHHHhhc
Q 012448 292 -------IDESSAKTVISAIDGRLGFLQS-QDSDECESALEALGQIGS-SIQGATLLLLC 342 (463)
Q Consensus 292 -------~~~~~~k~~p~~l~~~f~~~~~-~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~ 342 (463)
.+..-.++| ..+..++.+++. +|+.++++|.-=+|+.-+ .++|+.++.+-
T Consensus 350 e~FW~eNa~rlnenny-ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ 408 (442)
T KOG2759|consen 350 EKFWRENADRLNENNY-ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKY 408 (442)
T ss_pred cchHHHhHHHHhhccH-HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHh
Confidence 111124444 345555666655 568999999888888776 99999999984
No 167
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=72.74 E-value=2.1e+02 Score=34.04 Aligned_cols=267 Identities=16% Similarity=0.154 Sum_probs=130.4
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcccccc-
Q 012448 87 VGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFP- 165 (463)
Q Consensus 87 ~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~- 165 (463)
.=+.|-|+.+|+++++++.++.... .+ .+.+ ..++.++.+.-.++...---...+.+.+...--+++-++.
T Consensus 551 ~Kv~HWd~~irelaa~aL~~Ls~~~---pk----~~a~-~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~ 622 (1133)
T KOG1943|consen 551 KKVCHWDVKIRELAAYALHKLSLTE---PK----YLAD-YVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKG 622 (1133)
T ss_pred cccccccHHHHHHHHHHHHHHHHhh---HH----hhcc-cchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhh
Confidence 3388999999999999999975533 22 2222 5677777777776665444333333333222111221111
Q ss_pred --CCCcch------hhHhhHhh-cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHH
Q 012448 166 --ADNKAA------TDLGNLVA-QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELL 236 (463)
Q Consensus 166 --~~~~~~------~~L~~~~~-~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell 236 (463)
.+-+.. ....+... .+.+..|.-++..+=+++-.+..++..++-++.-..+.+.+++ .- -.|=.+.+=+
T Consensus 623 l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~-~n-~i~~~av~av 700 (1133)
T KOG1943|consen 623 LDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL-PN-QIRDAAVSAV 700 (1133)
T ss_pred hHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc-hH-HHHHHHHHHH
Confidence 111110 00000111 1224556566666667776777777777766666666666644 22 4455566666
Q ss_pred HHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchh-cc-hhhhhhhHHHHHHHhccccCC
Q 012448 237 YELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMF-ID-ESSAKTVISAIDGRLGFLQSQ 314 (463)
Q Consensus 237 ~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~-~~-~~~~k~~p~~l~~~f~~~~~~ 314 (463)
.+++.+---.+--...-++.+..+.+.+..+... | -|++..-|..-.+ +. +...+ +...+++...+.
T Consensus 701 ~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~-r------~g~~lal~~lp~~~i~~~~q~~----lc~~~l~~~p~d 769 (1133)
T KOG1943|consen 701 SDLVSTYVKADEGEEAPLITRYLSRLTKCSEERI-R------RGLILALGVLPSELIHRHLQEK----LCKLVLELLPSD 769 (1133)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHH-H------HHHHHHHccCcHHhhchHHHHH----HHHHHhccCccc
Confidence 6666642111111111333444444443333332 2 3444432121111 10 00111 223233322222
Q ss_pred -ChhhhhHHHHHHHhhcCCHHHHHHHh-hcCchhHHHHHHHHHhhccchh-------hHhHHhhhHHHhcC
Q 012448 315 -DSDECESALEALGQIGSSIQGATLLL-LCLPPAARHVIDAAFDRQGHGK-------QLAALHGLANIAGK 376 (463)
Q Consensus 315 -d~~~~~~A~dtlG~Igss~eGk~~L~-~~~~~~~~~~l~~~~~~~~~~~-------k~r~L~al~~Il~~ 376 (463)
...-+...+.++..+..+.- ..+. ......+.++++.+-++..+.. |..||+++..+...
T Consensus 770 ~~a~aR~~~V~al~~v~~~~~--~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~ 838 (1133)
T KOG1943|consen 770 AWAEARQQNVKALAHVCKTVT--SLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDT 838 (1133)
T ss_pred ccHHHHHHHHHHHHHHHHHHH--HhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhh
Confidence 34445556666666665444 1111 1123456667777777766422 88999999887763
No 168
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=72.38 E-value=5 Score=34.77 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=49.3
Q ss_pred cHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHH
Q 012448 127 IYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASV 206 (463)
Q Consensus 127 l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~ 206 (463)
.+++++..|.|++.+|+..|+++|.+.+..+..++.++.-. + .|. .+..... -++..+.+.+. -+.+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~~--p--~l~-~L~~~g~-------~Ll~~~lS~~~-Gf~~ 75 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSLR--P--SLD-HLGDIGS-------PLLLRFLSTPS-GFRY 75 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHcC--c--HHH-HHHHcCH-------HHHHHHHcchH-HHHH
Confidence 36788999999999999999999999998886666554211 2 222 2222222 34445554443 3566
Q ss_pred HHhhccHHHHH
Q 012448 207 IFKANLLTLLE 217 (463)
Q Consensus 207 v~~sgl~~~ll 217 (463)
..+.|.++.-+
T Consensus 76 L~~~~~v~~El 86 (115)
T PF14663_consen 76 LNEIGYVEKEL 86 (115)
T ss_pred hcchhHHHHHH
Confidence 65555555433
No 169
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=72.38 E-value=18 Score=41.79 Aligned_cols=146 Identities=16% Similarity=0.127 Sum_probs=100.8
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhc-cCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC
Q 012448 81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLID-YEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG 159 (463)
Q Consensus 81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~-~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~ 159 (463)
+.+-++.+.+.-.-.+|..-+.++...+.|- + ...++.+ +.++|++++||.-||..|.-.+.+.+..+-...+-
T Consensus 868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~v---P--~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQKHNYLEALSHVLTNV---P--KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred hHHHHHHHhccCCccchhHHHHHHHHHHhcC---C--HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 4788888888888899999999999999976 3 2333333 35999999999999999999999999888666543
Q ss_pred ccccccCCCcchhhHhhHhhcCC---chhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHH
Q 012448 160 IDIIFPADNKAATDLGNLVAQCS---SLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILE 234 (463)
Q Consensus 160 l~~l~~~~~~~~~~L~~~~~~~~---~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnale 234 (463)
+..-.=..+++ ++-.+-...| -+||.=++.|+..+...-|---=+...-..+..+...|+| +-=+||.-|..
T Consensus 943 L~t~~~~Tlvp--~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdD-kKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 943 LQTEHLSTLVP--YLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDD-KKRLVRKEAVD 1017 (1030)
T ss_pred cchHHHhHHHH--HHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCc-HHHHHHHHHHH
Confidence 32212122333 3332323333 4788889999999998332211111223567788888988 77777776665
No 170
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=71.84 E-value=28 Score=41.13 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=105.2
Q ss_pred CCHHHHHHHHHHHHHHHhCCchhHHHHHH-------HhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccc
Q 012448 92 DSHSVKRLACKTVTCLLEDSDLEASCALQ-------LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIF 164 (463)
Q Consensus 92 ~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~-------~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~ 164 (463)
|...=-++++.++..++... .. ++. ++-.-.++...+.|=++|. +-+-|.+++..+....+.++.+.
T Consensus 1737 Ps~~~v~m~LtAL~Nli~~n---Pd-lasvfgSe~~lig~F~l~~~~lr~~~~~~--iq~LaL~Vi~~~Tan~~Cv~~~a 1810 (2235)
T KOG1789|consen 1737 PTETKVLMTLTALANLVSAN---PD-LASVFGSEILLIGNFPLLITYLRCRKHPK--LQILALQVILLATANKECVTDLA 1810 (2235)
T ss_pred ChHHHHHHHHHHHHHHHhhC---cc-hhhhccchhhhhcccHHHHHHHHHcCCch--HHHHHHHHHHHHhcccHHHHHHH
Confidence 44445678999999988755 22 222 3333344455556666655 77889999999988888888888
Q ss_pred cCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hH
Q 012448 165 PADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQ 243 (463)
Q Consensus 165 ~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~ 243 (463)
..+++. .|- .+.+.-..-|-||++.+-.+++..+ ......+.|-+-.++.-+-+++-.-+|..++|++..|.. .-
T Consensus 1811 ~~~vL~--~LL-~lLHS~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl 1886 (2235)
T KOG1789|consen 1811 TCNVLT--TLL-TLLHSQPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKL 1886 (2235)
T ss_pred hhhHHH--HHH-HHHhcChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccc
Confidence 777776 666 5678888999999999999997644 444445567777777777776778899999999999876 44
Q ss_pred HH
Q 012448 244 HS 245 (463)
Q Consensus 244 ~g 245 (463)
+|
T Consensus 1887 ~G 1888 (2235)
T KOG1789|consen 1887 TG 1888 (2235)
T ss_pred cC
Confidence 44
No 171
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=71.51 E-value=43 Score=38.25 Aligned_cols=171 Identities=15% Similarity=0.169 Sum_probs=107.6
Q ss_pred CChHHHHHHHhcCChHHHHHcccc------CCCCcchH-------HHHHHHHHHHhccccccchhhchHHHHHHhhcCCC
Q 012448 27 QNDAAAKKFLDRFPLSVILNTLQT------KPDVPGLE-------DTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADS 93 (463)
Q Consensus 27 ~s~~~~~~~~~~~~l~~L~~~L~~------~~~~~~~~-------~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~ 93 (463)
-|.+-+..+.+++.--.|++||.+ +|-+.... ..+..+|+|+.+.+.+..++.+....+++||+..
T Consensus 141 ~s~eyV~~l~~gl~t~~l~~CleslRVsL~~npVSwvn~Fgvegl~ll~~~Lkrl~dsk~~~~~~~k~~~eiIrClka~- 219 (1102)
T KOG1924|consen 141 SSPEYVVELRSGLSTKKLLECLESLRVSLTSNPVSWVNKFGVEGLGLLLDVLKRLRDSKVGSKLDIKNLQEIIRCLKAF- 219 (1102)
T ss_pred CChHHHHHHHcccccccHHHHHHHHhhhhcCCccHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH-
Confidence 355667777777777788888765 22222222 2344488888888877777777777777776432
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhh
Q 012448 94 HSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATD 173 (463)
Q Consensus 94 ~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~ 173 (463)
..+. -+ +.-.+....-+.+++..+--.+...-..+++.|+.++ |+..
T Consensus 220 --------------mNn~---~G-l~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalc--------iV~e------- 266 (1102)
T KOG1924|consen 220 --------------MNNK---FG-LVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALC--------IVGE------- 266 (1102)
T ss_pred --------------hccc---cc-eeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHh--------eeeh-------
Confidence 1122 23 3333333333445555554445567777888887775 2221
Q ss_pred HhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHH
Q 012448 174 LGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEF 248 (463)
Q Consensus 174 L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~ 248 (463)
...--+|++.+..||... ...=|..++.+|+..+++-.++.|+.++-.|..++.-++|
T Consensus 267 ---------e~~~ekvl~aiT~~ae~~--------~veRF~piv~gl~~~e~~~l~vacmq~INal~t~p~dldf 324 (1102)
T KOG1924|consen 267 ---------ENGLEKVLEAITTIAEAK--------PVERFRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLDF 324 (1102)
T ss_pred ---------hhHHHHHHHHHHHHHhhc--------chhhhhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhhH
Confidence 122346777777777662 2356777888888866899999999999988887766555
No 172
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=71.49 E-value=12 Score=36.52 Aligned_cols=120 Identities=15% Similarity=0.195 Sum_probs=78.2
Q ss_pred HHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHH---------HH---------HhHHHHHHHHHhhHHHHHHHHhcc
Q 012448 192 LIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTL---------ET---------LSILELLYELAEIQHSAEFLSRTT 253 (463)
Q Consensus 192 l~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvL---------v~---------lnalell~eLa~t~~g~~~L~~~g 253 (463)
.+.+.--.++|-..+..++++++.+..+|.. -|.. .. -.-+.+|.-|..+++|.+.|++.|
T Consensus 86 ~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~-~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl~lLe~~~ 164 (226)
T PF14666_consen 86 QLLETLLSSPEGIKYLSESKLLPQIAECLAQ-VDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGLKLLERWN 164 (226)
T ss_pred HHHHHHHcCcHHHHHHHHccHHHHHHHHHHH-HhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHHHHHHHCC
Confidence 3334444568888888899999988888766 4332 21 223568889999999999999999
Q ss_pred hHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhh
Q 012448 254 LLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQI 329 (463)
Q Consensus 254 i~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~I 329 (463)
++.-+.+++.....|.++. ++.+-+-+ . .+. ..+ .++.++ +.+....++-.|...|+.+
T Consensus 165 if~~l~~i~~~~~~~~l~k----lil~~LDY-----~-~~~-~~R---~iLsKa---Lt~~s~~iRl~aT~~L~~l 223 (226)
T PF14666_consen 165 IFTMLYHIFSLSSRDDLLK----LILSSLDY-----S-VDG-HPR---IILSKA---LTSGSESIRLYATKHLRVL 223 (226)
T ss_pred HHHHHHHHHccCchHHHHH----HHHhhCCC-----C-Ccc-HHH---HHHHHH---HhcCCHHHHHHHHHHHHHH
Confidence 9999999999876555532 22222222 1 111 112 334443 4566678888888777754
No 173
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=71.24 E-value=1.8e+02 Score=32.54 Aligned_cols=131 Identities=14% Similarity=0.101 Sum_probs=77.5
Q ss_pred cchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 012448 75 ASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLA 154 (463)
Q Consensus 75 ~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~la 154 (463)
..+.-++++||-..|..-..-|.-=+++.+.+....+-. +. ..+.. +..+=.-|..+.....=.|+.+|.++|
T Consensus 259 ~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~-~~-~~~~~-----vs~L~~fL~s~rv~~rFsA~Riln~la 331 (898)
T COG5240 259 SQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVG-SQ-FVDQT-----VSSLRTFLKSTRVVLRFSAMRILNQLA 331 (898)
T ss_pred hHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccC-HH-HHHHH-----HHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 345667899999999999999999999999997754411 11 22222 223334667888888889999999999
Q ss_pred CCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCC
Q 012448 155 GFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSK 222 (463)
Q Consensus 155 k~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~ 222 (463)
-..|..=.+-.+ .+..++...|-.+-.-+.-.+ +-.-.++..+..+ ..++.++..+.|
T Consensus 332 m~~P~kv~vcN~------evEsLIsd~Nr~IstyAITtL--LKTGt~e~idrLv--~~I~sfvhD~SD 389 (898)
T COG5240 332 MKYPQKVSVCNK------EVESLISDENRTISTYAITTL--LKTGTEETIDRLV--NLIPSFVHDMSD 389 (898)
T ss_pred hhCCceeeecCh------hHHHHhhcccccchHHHHHHH--HHcCchhhHHHHH--HHHHHHHHhhcc
Confidence 877643222222 233344444444433322222 2222344444444 355555555544
No 174
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=70.99 E-value=8.8 Score=32.51 Aligned_cols=73 Identities=12% Similarity=0.105 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcc
Q 012448 95 SVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKA 170 (463)
Q Consensus 95 ~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~ 170 (463)
.+|.=|+.+|..-+.|. -.....++....++..++.-.+.+.......+...|.++.+++.|.+.+.+-+...
T Consensus 2 EIR~RAL~~I~~Kl~~~---Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~ 74 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHG---LISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVR 74 (98)
T ss_pred hHHHHHHHHHHHHHHhc---cccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHH
Confidence 46777888888888877 33133455456799999999999999999999999999999998877666655554
No 175
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=70.94 E-value=1.3e+02 Score=30.71 Aligned_cols=190 Identities=17% Similarity=0.153 Sum_probs=112.7
Q ss_pred HhhcCCchhHHHHHHHHHHHHhcCH--HHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhh----HHHHHHHH
Q 012448 177 LVAQCSSLGRVRVLSLIVKLFSVSR--SVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEI----QHSAEFLS 250 (463)
Q Consensus 177 ~~~~~~~~vR~Rv~el~v~ia~~S~--~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t----~~g~~~L~ 250 (463)
.+..++...|-..++-+.++.++.. +-.+.-. .-+++.++..++. ...--+.-|+.++.=++-+ .+.-.+..
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~-~tL~~~~~k~lkk-g~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~ 128 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRR-ETLLDALLKSLKK-GKSEEQALAARALALLALTLGAGEDSEEIFE 128 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHH-HHHHHHHHHHhcc-CCHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Confidence 4567889999999999999987643 3322212 3478999999987 4334455566666666654 22222222
Q ss_pred hcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhcc-----------cc-CCChhh
Q 012448 251 RTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGF-----------LQ-SQDSDE 318 (463)
Q Consensus 251 ~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~-----------~~-~~d~~~ 318 (463)
.+...|...+.+....+-.|.-++.+.|.+.++++.- .+. ... .-..++.+|.. +. .+++.+
T Consensus 129 --~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d--~~~-~~~-~~~~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 129 --ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSD--EEE-TEE-LMESLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred --HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC--hhH-HHH-HHHHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 3555666777777666666655555667766643221 001 010 11223323311 11 224678
Q ss_pred hhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccc---hhhHhHHhhhHHHhcCCCc
Q 012448 319 CESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGH---GKQLAALHGLANIAGKTRS 379 (463)
Q Consensus 319 ~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~---~~k~r~L~al~~Il~~~r~ 379 (463)
..+|+.+||.+-++....++-. .+...+.++.....+ .-|+.|=.+++.|++..|.
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~-----~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLED-----LLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHH-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999998777643332 233344444443333 2299999999999997764
No 176
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=70.78 E-value=91 Score=31.78 Aligned_cols=185 Identities=16% Similarity=0.050 Sum_probs=99.4
Q ss_pred HHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHH----hhcCCc
Q 012448 64 CLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLD----CLINGN 139 (463)
Q Consensus 64 vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~----~l~d~d 139 (463)
+|...+... ..++...+.+.+..|+....+.||+.-+..++.++....+... ...+ . .+++.++. ..+.|-
T Consensus 46 al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~--~~~~-~-~~~~~L~~~~~~~~~~p~ 120 (339)
T PF12074_consen 46 ALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS--LKFA-E-PFLPKLLQSLKEASANPL 120 (339)
T ss_pred HHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH--HHHH-H-HHHHHHHHHHHHHHhCCC
Confidence 444444333 4567778999999999999999999999999999871100011 1111 0 13333332 223332
Q ss_pred hH----HHHHHHHHHH-----------------HHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448 140 EE----VATASMDAIK-----------------KLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS 198 (463)
Q Consensus 140 ~~----va~~A~~~L~-----------------~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~ 198 (463)
.. ....|.-.+. .+.-. +.-..++.+.++. + + .++.--+=++.++..+..
T Consensus 121 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~-~kps~ll~~kvys--k---l---~~~~d~~w~~~al~~~~~ 191 (339)
T PF12074_consen 121 QSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALD-PKPSFLLSEKVYS--K---L---ASEEDLCWLLRALEALLS 191 (339)
T ss_pred CccccccHHHHHHHHHhccccchhhhhhhhhhhhhccC-CCcchhcCHHHHh--c---c---CCHhHHHHHHHHHHHHHh
Confidence 22 1122222222 00000 0111222222222 1 1 222333333333334443
Q ss_pred cCHHHHHHHHhhccHHHHHhhcCCCC--cHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccc
Q 012448 199 VSRSVASVIFKANLLTLLEEGVSKKN--DTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSA 266 (463)
Q Consensus 199 ~S~~~~~~v~~sgl~~~ll~eL~~~~--DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~ 266 (463)
...+....-....+-..++..+.+ . -.=+|..|++.++++..+.-+. ....++..+.+.+...+
T Consensus 192 ~~~~~~~~~~~~~~~~a~i~ll~s-~~~~~~vR~~A~~~l~~l~~~~~~~---l~~~li~~l~~~l~~~~ 257 (339)
T PF12074_consen 192 DHPSELSSDKSSAWAQAFIYLLCS-SNVSWKVRRAALSALKKLYASNPEL---LSKSLISGLWKWLSSSE 257 (339)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhChHH---HHHHHHHHHHHHHHhcc
Confidence 333322211134566778888888 5 7889999999999999855554 66678888888877554
No 177
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=69.36 E-value=14 Score=30.84 Aligned_cols=86 Identities=13% Similarity=0.026 Sum_probs=64.8
Q ss_pred CcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHH
Q 012448 126 EIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVAS 205 (463)
Q Consensus 126 ~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~ 205 (463)
..+..++.-|.||...|...++..|.++-+... ...+--+.++. -+...+.+.++-|-.++...++.++..-++
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~--l~l~~L~d~DsyVYL~aI~~L~~La~~~p~--- 76 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILD--LFLSQLKDEDSYVYLNAIKGLAALADRHPD--- 76 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHH--HHHHHcCCCCchHHHHHHHHHHHHHHHChH---
Confidence 346677888999999999999999999987775 22222223333 444578899999999999999999988775
Q ss_pred HHHhhccHHHHHhhcCC
Q 012448 206 VIFKANLLTLLEEGVSK 222 (463)
Q Consensus 206 ~v~~sgl~~~ll~eL~~ 222 (463)
..++.++.+..+
T Consensus 77 -----~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 -----EVLPILLDEYAD 88 (92)
T ss_pred -----HHHHHHHHHHhC
Confidence 267777777766
No 178
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=69.22 E-value=65 Score=29.04 Aligned_cols=94 Identities=10% Similarity=0.004 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC
Q 012448 58 EDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN 137 (463)
Q Consensus 58 ~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d 137 (463)
...+-++.+.+-+. ..-.......|..=|.|++|.|.-+|+.-+..+++|.+. . ..+.+.+.+++.-++..+.+
T Consensus 18 w~~il~icD~I~~~---~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~--~-fh~evask~Fl~eL~kl~~~ 91 (144)
T cd03568 18 WGLILDVCDKVKSD---ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGK--R-FHQEVASRDFTQELKKLIND 91 (144)
T ss_pred HHHHHHHHHHHhcC---CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH--H-HHHHHhhHHHHHHHHHHhcc
Confidence 34444444555222 233445678888999999999999999999999999842 3 55667777888888888888
Q ss_pred -CchHHHHHHHHHHHHHhCCC
Q 012448 138 -GNEEVATASMDAIKKLAGFP 157 (463)
Q Consensus 138 -~d~~va~~A~~~L~~lak~~ 157 (463)
.+..|.......+...+..-
T Consensus 92 ~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 92 RVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred cCCHHHHHHHHHHHHHHHHHh
Confidence 78999999999998887443
No 179
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=68.81 E-value=7.2 Score=27.62 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=23.3
Q ss_pred hhhchHHHHHHhhcCCCHHHHHHHHHH
Q 012448 77 LIPHYMPFVQVGLTADSHSVKRLACKT 103 (463)
Q Consensus 77 l~~~~~~~l~~gL~h~~~~Vr~Lal~~ 103 (463)
..+.+...+..+|..+++.||+.++..
T Consensus 15 ~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 15 DSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred chHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 345789999999999999999999864
No 180
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.50 E-value=20 Score=38.77 Aligned_cols=116 Identities=20% Similarity=0.150 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHh
Q 012448 99 LACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLV 178 (463)
Q Consensus 99 Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~ 178 (463)
.|+.-+..++++. . +-.-+.+.+++..++.||...+.++-...++.|++++=.-+.-......+.+. +|-++.
T Consensus 282 va~ylLlNlAed~----~-~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~ive--KL~klf 354 (791)
T KOG1222|consen 282 VAVYLLLNLAEDI----S-VELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVE--KLLKLF 354 (791)
T ss_pred HHHHHHHHHhhhh----h-HHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHH--HHHHhc
Confidence 3444455555544 2 44467788999999999999999999999999999974433222222333444 666677
Q ss_pred hcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCC
Q 012448 179 AQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSK 222 (463)
Q Consensus 179 ~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~ 222 (463)
..+.+.+|--++-++-+++ ...-+...+++.|++|.+..-|++
T Consensus 355 p~~h~dL~~~tl~LlfNlS-FD~glr~KMv~~GllP~l~~ll~~ 397 (791)
T KOG1222|consen 355 PIQHPDLRKATLMLLFNLS-FDSGLRPKMVNGGLLPHLASLLDS 397 (791)
T ss_pred CCCCHHHHHHHHHHhhhcc-ccccccHHHhhccchHHHHHHhCC
Confidence 7788888888888887776 334566788899999999888865
No 181
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=68.40 E-value=62 Score=33.99 Aligned_cols=121 Identities=8% Similarity=0.135 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhCC-C---CCcccccc-CCCcchhhHhhHhhcC---CchhHHHHHHHHHHHHhcCHHHHHHHHhhcc
Q 012448 141 EVATASMDAIKKLAGF-P---NGIDIIFP-ADNKAATDLGNLVAQC---SSLGRVRVLSLIVKLFSVSRSVASVIFKANL 212 (463)
Q Consensus 141 ~va~~A~~~L~~lak~-~---~~l~~l~~-~~~~~~~~L~~~~~~~---~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl 212 (463)
.+-|.-++.+.++-.+ + ..+..++| ..... .|+.++.+. ...+=.-+..++..+--.-|..+..+.|+|+
T Consensus 75 ~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~--sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl 152 (379)
T PF06025_consen 75 QLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLS--SLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL 152 (379)
T ss_pred HHHHHHHHHHHHHhccCCCcccccccccchhhHHH--HHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence 3444455666666551 1 23456777 55555 677444333 3344444555666666678999999999999
Q ss_pred HHHHHhhcCCCCcHHHHH----hHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcc
Q 012448 213 LTLLEEGVSKKNDTLETL----SILELLYELAEIQHSAEFLSRTTLLQLLCSLIGN 264 (463)
Q Consensus 213 ~~~ll~eL~~~~DvLv~l----nalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~ 264 (463)
.+.+++-+.- .+++--. ..-++|..++-.+.|.+.+.+.+.++++.+++.+
T Consensus 153 ~~~~L~~i~~-~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 153 IDAFLDAITA-KGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred hHHHHHHHhc-cCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 9999998873 3343222 2346777889999999999999999999988764
No 182
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=65.10 E-value=62 Score=28.75 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=60.8
Q ss_pred cchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchH----HHHHHHHHH
Q 012448 75 ASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEE----VATASMDAI 150 (463)
Q Consensus 75 ~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~----va~~A~~~L 150 (463)
+.-.......|..=|+|++|.|..+|+.-+..+++|.+ ......+.+.+++..+...+.++... |.+.++..|
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg---~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll 113 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCG---PRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELL 113 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH---HHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHH
Confidence 33445567889999999999999999999999999983 32556666777777777766554443 889999998
Q ss_pred HHHhCCC
Q 012448 151 KKLAGFP 157 (463)
Q Consensus 151 ~~lak~~ 157 (463)
...+..-
T Consensus 114 ~~W~~~f 120 (140)
T PF00790_consen 114 QEWAEAF 120 (140)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8776443
No 183
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=64.99 E-value=69 Score=35.19 Aligned_cols=79 Identities=20% Similarity=0.199 Sum_probs=39.7
Q ss_pred chHHHHHHHhcc--cccchhhhhhhhhHhhhhccccccchhc--chhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHh
Q 012448 253 TLLQLLCSLIGN--SATETILRSRAIMISGRLLSKDDSHMFI--DESSAKTVISAIDGRLGFLQSQDSDECESALEALGQ 328 (463)
Q Consensus 253 gi~~~L~~~i~~--~~~dpl~r~~aili~g~i~~f~~~~~~~--~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~ 328 (463)
-+++.+.+++.. ....|.++.-+++..|-+.-....-.-. ........|.+.+.+-+..+..|...+-+++-+||+
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 455666666664 3466666644444444333210000000 000112122233322234456788889999999999
Q ss_pred hcC
Q 012448 329 IGS 331 (463)
Q Consensus 329 Igs 331 (463)
+|.
T Consensus 473 ~g~ 475 (574)
T smart00638 473 AGH 475 (574)
T ss_pred cCC
Confidence 998
No 184
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=64.52 E-value=34 Score=39.64 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=97.0
Q ss_pred HHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhc---hHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 012448 31 AAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPH---YMPFVQVGLTADSHSVKRLACKTVTCL 107 (463)
Q Consensus 31 ~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~---~~~~l~~gL~h~~~~Vr~Lal~~l~~i 107 (463)
.-|+..=....|.|.+...++. ...+-.--..|..++...+-..+.|+ +.+.|..||.=||..||--+++.+.-.
T Consensus 859 LykQRfF~~ivP~l~~~~~t~~--~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~ 936 (1030)
T KOG1967|consen 859 LYKQRFFCDIVPILVSKFETAP--GSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPML 936 (1030)
T ss_pred HHHHHHHHhhHHHHHHHhccCC--ccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHH
Confidence 4455555566777777777543 12232333344555544444455544 589999999999999999999999887
Q ss_pred HhCCchhHHHHHHHhhccCcHHHHHHhhcCCc---hHHHHHHHHHHHHHhCCCC--CccccccCCCcchhhHhhHhhcCC
Q 012448 108 LEDSDLEASCALQLLIDYEIYPLLLDCLINGN---EEVATASMDAIKKLAGFPN--GIDIIFPADNKAATDLGNLVAQCS 182 (463)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d---~~va~~A~~~L~~lak~~~--~l~~l~~~~~~~~~~L~~~~~~~~ 182 (463)
+... .. +...=++ .++|.++..=.+++ +.|...|++.|..+.+..| .+. -|.+.++. -|.+.+.++.
T Consensus 937 l~~~---~t-L~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~-~fr~~Vl~--al~k~LdDkK 1008 (1030)
T KOG1967|consen 937 LTES---ET-LQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLL-SFRPLVLR--ALIKILDDKK 1008 (1030)
T ss_pred HHhc---cc-cchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccc-cccHHHHH--HhhhccCcHH
Confidence 7543 22 2222222 57888887777777 7899999999999998433 222 45566665 6666666666
Q ss_pred chhHHHH
Q 012448 183 SLGRVRV 189 (463)
Q Consensus 183 ~~vR~Rv 189 (463)
-.||..+
T Consensus 1009 RlVR~eA 1015 (1030)
T KOG1967|consen 1009 RLVRKEA 1015 (1030)
T ss_pred HHHHHHH
Confidence 6666544
No 185
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=64.04 E-value=2.2e+02 Score=32.46 Aligned_cols=170 Identities=11% Similarity=-0.021 Sum_probs=127.6
Q ss_pred cCCCHHHHHHHHHHHHHHHhCCc-hhHHHHHHHh-hccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCC
Q 012448 90 TADSHSVKRLACKTVTCLLEDSD-LEASCALQLL-IDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPAD 167 (463)
Q Consensus 90 ~h~~~~Vr~Lal~~l~~i~~~~~-~~~~~~~~~~-~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~ 167 (463)
..-++.+-+.++-+|..+.--.. .... ..+.+ .....++.++..|..+|..|.+.++.+|..++..... +.+....
T Consensus 529 ~s~n~~TlEasaGaLQNltA~~~~~~~~-~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn-k~ligk~ 606 (717)
T KOG1048|consen 529 LSKNDNTLEASAGALQNLTAGLWTWSEY-MRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN-KELIGKY 606 (717)
T ss_pred HhcchHHHHHhhhhHhhhhccCCcchhH-HHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh-hhhhhcc
Confidence 55677777888888887764332 2233 56666 7777999999999999999999999999999988743 3344455
Q ss_pred CcchhhHhhHhhc------CCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 168 NKAATDLGNLVAQ------CSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 168 ~~~~~~L~~~~~~------~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
+++ +|-+.+-. .++..=+-||-.+-+|...|.+.+..+.+.+=+++++.-.++..+.=+-..+-.++..|=.
T Consensus 607 a~~--~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 607 AIP--DLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred hHH--HHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 555 55544321 2466778899999999999999999999999999999988886776777777777777777
Q ss_pred hHHHHHHHHhcchHHHHHHHhc
Q 012448 242 IQHSAEFLSRTTLLQLLCSLIG 263 (463)
Q Consensus 242 t~~g~~~L~~~gi~~~L~~~i~ 263 (463)
..+.-.-+.+.|.-+.......
T Consensus 685 y~eLh~~~kk~g~~q~~F~~~~ 706 (717)
T KOG1048|consen 685 YKELHFKLKKKGFKQQDFYDAL 706 (717)
T ss_pred HHHHhhhHhhhhhHHHHHHhHH
Confidence 7777666777777776654443
No 186
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=63.99 E-value=58 Score=32.44 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHh
Q 012448 184 LGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLI 262 (463)
Q Consensus 184 ~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i 262 (463)
.....++.++=-++=..|.+-.......-+..+++-|..+.++.++.++++.|.-+-- ++...+--++.+|+..++..+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 3344444555555555566666666777888888888665899999999998776555 999999999999999999999
Q ss_pred cccccchhhh
Q 012448 263 GNSATETILR 272 (463)
Q Consensus 263 ~~~~~dpl~r 272 (463)
.+...+.-+|
T Consensus 186 k~~~~~~~~r 195 (257)
T PF08045_consen 186 KSKSTDRELR 195 (257)
T ss_pred ccccccHHHh
Confidence 9988877665
No 187
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=63.80 E-value=96 Score=30.93 Aligned_cols=95 Identities=18% Similarity=0.239 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHhhc----cHHHHHhhcCCCCcHHHHHhHHHHHHHHHh--hHHHHHHHHhcchHHHHHH
Q 012448 187 VRVLSLIVKLFSVSRSVASVIFKAN----LLTLLEEGVSKKNDTLETLSILELLYELAE--IQHSAEFLSRTTLLQLLCS 260 (463)
Q Consensus 187 ~Rv~el~v~ia~~S~~~~~~v~~sg----l~~~ll~eL~~~~DvLv~lnalell~eLa~--t~~g~~~L~~~gi~~~L~~ 260 (463)
|.++.++=-+|+|.+--- .....- +.+.+-.-.+++++..+|++++-++..|++ .++-.+||..++|+.....
T Consensus 97 cnaL~LlQcvASHpdTr~-~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVASHPDTRR-AFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHhcCcchHH-HHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 445555556777754332 222221 234444445566899999999999999999 5667799999999999999
Q ss_pred HhcccccchhhhhhhhhHhhhhcc
Q 012448 261 LIGNSATETILRSRAIMISGRLLS 284 (463)
Q Consensus 261 ~i~~~~~dpl~r~~aili~g~i~~ 284 (463)
.+...++ +.++-|.-|.+-|+.
T Consensus 176 ime~GSe--lSKtvA~fIlqKIll 197 (293)
T KOG3036|consen 176 IMESGSE--LSKTVATFILQKILL 197 (293)
T ss_pred HHhcccH--HHHHHHHHHHHHHhh
Confidence 9885443 234445556666555
No 188
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=63.71 E-value=57 Score=28.71 Aligned_cols=79 Identities=13% Similarity=0.030 Sum_probs=60.5
Q ss_pred chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC---CchHHHHHHHHHHHH
Q 012448 76 SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN---GNEEVATASMDAIKK 152 (463)
Q Consensus 76 ~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d---~d~~va~~A~~~L~~ 152 (463)
.-.......|..=|+|++|.|..+|+.-+-.++.|.+. . ....+.+.+.+.-++..+.. .+..|.+.++..+..
T Consensus 33 ~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~--~-f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~ 109 (133)
T cd03561 33 NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGK--P-FHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILA 109 (133)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh--H-HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 33444677888889999999999999999999999843 2 55556665666667776664 588899999999988
Q ss_pred HhCCC
Q 012448 153 LAGFP 157 (463)
Q Consensus 153 lak~~ 157 (463)
.+..-
T Consensus 110 W~~~f 114 (133)
T cd03561 110 WSESF 114 (133)
T ss_pred HHHHh
Confidence 76543
No 189
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=62.76 E-value=22 Score=32.59 Aligned_cols=110 Identities=13% Similarity=0.148 Sum_probs=70.0
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhc---------CCchHHHHHHHHHHH
Q 012448 81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLI---------NGNEEVATASMDAIK 151 (463)
Q Consensus 81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~---------d~d~~va~~A~~~L~ 151 (463)
-+++++..|....... -.+..+...+++. ...-++.+++.+=+..|+.+|. +.+..+-...+..|+
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~---~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clk 141 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTN---PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLK 141 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS----HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccC---CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHH
Confidence 3566666665554443 3444555555554 2114555555554444443332 355678888999999
Q ss_pred HHhCCCCCccccc-cCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448 152 KLAGFPNGIDIIF-PADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF 197 (463)
Q Consensus 152 ~lak~~~~l~~l~-~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia 197 (463)
.|..+..|++.++ .++.+. .|...+...+..+|..|+++++-++
T Consensus 142 al~n~~~G~~~v~~~~~~v~--~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 142 ALMNTKYGLEAVLSHPDSVN--LIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHTSSHHHHHHHHCSSSHHH--HHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHcCcHHHH--HHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9999999997555 566666 7777778889999999999998765
No 190
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=61.38 E-value=15 Score=41.17 Aligned_cols=222 Identities=12% Similarity=0.107 Sum_probs=132.6
Q ss_pred hHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 012448 29 DAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLL 108 (463)
Q Consensus 29 ~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~ 108 (463)
+..-++++..-.+|.|+..+.-.+ .-.+-+...+... .-+..++.-+.+.+.|..-+..+|-.||-+.+..+-..+
T Consensus 283 ~~~pe~i~~~kvlp~Ll~~~~~g~---a~~~~ltpl~k~~-k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i 358 (690)
T KOG1243|consen 283 DNFPEEIIASKVLPILLAALEFGD---AASDFLTPLFKLG-KDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI 358 (690)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccc---cchhhhhHHHHhh-hhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHh
Confidence 344566667777888888876543 1112222222211 112233455567999999999999999999999999987
Q ss_pred hCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHH
Q 012448 109 EDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVR 188 (463)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~R 188 (463)
+|- .+-.++..++|.+.+.+.|.+-.+....++.+..++.--. +.....+... .|++.-......+|..
T Consensus 359 ~~L-------t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~--~~~Ln~Ellr--~~ar~q~d~~~~irtn 427 (690)
T KOG1243|consen 359 DHL-------TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS--KRNLNGELLR--YLARLQPDEHGGIRTN 427 (690)
T ss_pred hhc-------CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--hhhhcHHHHH--HHHhhCccccCccccc
Confidence 765 2344566899999999999999999999999988863311 1122223333 5554333445567777
Q ss_pred HHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhccc--c
Q 012448 189 VLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNS--A 266 (463)
Q Consensus 189 v~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~--~ 266 (463)
---|+.+|+.+..- . +..+++...... .. .|..+..-..+++.-.+.. +|..++.+-.+|.-.+..- +
T Consensus 428 tticlgki~~~l~~---~-~R~~vL~~aftr-al-kdpf~paR~a~v~~l~at~----~~~~~~~va~kIlp~l~pl~vd 497 (690)
T KOG1243|consen 428 TTICLGKIAPHLAA---S-VRKRVLASAFTR-AL-KDPFVPARKAGVLALAATQ----EYFDQSEVANKILPSLVPLTVD 497 (690)
T ss_pred ceeeecccccccch---h-hhccccchhhhh-hh-cCCCCCchhhhhHHHhhcc----cccchhhhhhhccccccccccC
Confidence 66677777766432 2 245666444433 22 5555554445544444432 3555566666665444432 2
Q ss_pred cchhhhhhh
Q 012448 267 TETILRSRA 275 (463)
Q Consensus 267 ~dpl~r~~a 275 (463)
.++.+|.++
T Consensus 498 ~e~~vr~~a 506 (690)
T KOG1243|consen 498 PEKTVRDTA 506 (690)
T ss_pred cccchhhHH
Confidence 444444333
No 191
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=60.53 E-value=1.3e+02 Score=27.04 Aligned_cols=93 Identities=9% Similarity=0.003 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhc-
Q 012448 58 EDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLI- 136 (463)
Q Consensus 58 ~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~- 136 (463)
...+-++.+.|-+ .+ .........|..=|.|++|.|.-+|+.-+-.+++|-+. . ..+.+...+.+.-++..+.
T Consensus 19 w~~ileicD~In~--~~-~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~--~-fh~evas~~Fl~el~kl~~~ 92 (139)
T cd03567 19 WEAIQAFCEQINK--EP-EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGE--R-FHSEVGKFRFLNELIKLVSP 92 (139)
T ss_pred HHHHHHHHHHHHc--CC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH--H-HHHHHHhHHHHHHHHHHhcc
Confidence 4444445555522 22 23345677888999999999999999999999998843 2 5556666677777777774
Q ss_pred -----CCchHHHHHHHHHHHHHhCC
Q 012448 137 -----NGNEEVATASMDAIKKLAGF 156 (463)
Q Consensus 137 -----d~d~~va~~A~~~L~~lak~ 156 (463)
..+..|....+..+..-+..
T Consensus 93 k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 93 KYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 36788999999888877643
No 192
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.30 E-value=1.2e+02 Score=34.76 Aligned_cols=217 Identities=17% Similarity=0.220 Sum_probs=120.6
Q ss_pred chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhC
Q 012448 76 SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAG 155 (463)
Q Consensus 76 ~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak 155 (463)
.+.| -...++..+..|.+.+|=.|.+.|.+++... .. .+ .+-|.++= ..+.|.+.++|.-|+..|-+-+.
T Consensus 279 ~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~~---P~-~v-~~cN~elE----~lItd~NrsIat~AITtLLKTG~ 348 (865)
T KOG1078|consen 279 ELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAMKH---PQ-AV-TVCNLDLE----SLITDSNRSIATLAITTLLKTGT 348 (865)
T ss_pred hcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC---Cc-cc-cccchhHH----hhhcccccchhHHHHHHHHHhcc
Confidence 3444 5778889999999999999999999988644 22 22 12222332 45668899999999888876654
Q ss_pred CCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHH
Q 012448 156 FPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILEL 235 (463)
Q Consensus 156 ~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalel 235 (463)
... .+.+. . .+...+..-++.-|.=|-+.+..++..=+.--.... .++..++.+ + .-.=.+...++.
T Consensus 349 e~s-v~rLm-----~--qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m--~FL~~~Lr~-e--Gg~e~K~aivd~ 415 (865)
T KOG1078|consen 349 ESS-VDRLM-----K--QISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMM--NFLSNMLRE-E--GGFEFKRAIVDA 415 (865)
T ss_pred hhH-HHHHH-----H--HHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHH--HHHHHHHHh-c--cCchHHHHHHHH
Confidence 431 01000 0 111122334555555555555555554443322222 344444444 2 234446777777
Q ss_pred HHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCC
Q 012448 236 LYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQD 315 (463)
Q Consensus 236 l~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d 315 (463)
+..+.+..--. +..+...|++.|.+++-+-+ ..+.+-+.|.=.|+ -..+ +| |..++-. .+-=.+
T Consensus 416 Ii~iie~~pds----Ke~~L~~LCefIEDce~~~i-~~rILhlLG~EgP~---a~~P----sk-yir~iyN---RviLEn 479 (865)
T KOG1078|consen 416 IIDIIEENPDS----KERGLEHLCEFIEDCEFTQI-AVRILHLLGKEGPK---APNP----SK-YIRFIYN---RVILEN 479 (865)
T ss_pred HHHHHHhCcch----hhHHHHHHHHHHHhccchHH-HHHHHHHHhccCCC---CCCc----ch-hhHHHhh---hhhhhh
Confidence 77777732222 34567788888888875554 11222222322221 0001 22 3333322 222245
Q ss_pred hhhhhHHHHHHHhhcC
Q 012448 316 SDECESALEALGQIGS 331 (463)
Q Consensus 316 ~~~~~~A~dtlG~Igs 331 (463)
...+++|+-+|..||.
T Consensus 480 ~ivRaaAv~alaKfg~ 495 (865)
T KOG1078|consen 480 AIVRAAAVSALAKFGA 495 (865)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 6889999999999993
No 193
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=59.38 E-value=1.5e+02 Score=27.44 Aligned_cols=118 Identities=15% Similarity=0.141 Sum_probs=83.0
Q ss_pred HHhhccCcHHHHHHhhcCCch------HHHHHHHHHHHHHhCCCC-CccccccCCCcchhhHhhHhhc--CCchhHHHHH
Q 012448 120 QLLIDYEIYPLLLDCLINGNE------EVATASMDAIKKLAGFPN-GIDIIFPADNKAATDLGNLVAQ--CSSLGRVRVL 190 (463)
Q Consensus 120 ~~~~~~~l~~~li~~l~d~d~------~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L~~~~~~--~~~~vR~Rv~ 190 (463)
+-+.+.+=+.+++..+-++.. +.=.-+..++.++-.|.- +-+ .+++..+. +....+.. .|..+-.|.+
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~--Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIK--KIASYVNSSAMDASILQRSL 81 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHH--HHHHHHccccccchHHHHHH
Confidence 344455556666666666552 444557777777776642 223 22333333 33323322 2678888999
Q ss_pred HHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 191 SLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 191 el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
+++-.+...|+...+.|.+.==++.++..|.+ .|.-+|.|++-++--|-.
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~-~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQV-SNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHc-CCHHHHHHHHHHHHHHHh
Confidence 99999999999999999987778999999999 999999999999988765
No 194
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=58.48 E-value=68 Score=35.24 Aligned_cols=106 Identities=15% Similarity=0.091 Sum_probs=60.9
Q ss_pred hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhh-cCC--chHHHHHHHHHHHHH
Q 012448 77 LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCL-ING--NEEVATASMDAIKKL 153 (463)
Q Consensus 77 l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l-~d~--d~~va~~A~~~L~~l 153 (463)
+.+.+...|..+....+...+.+.+++||++ ++. .. ++.+...+ ++. ...+...|+.+|.++
T Consensus 443 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~-g~~---~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~ 507 (574)
T smart00638 443 LLKYLHELLQQAVSKGDEEEIQLYLKALGNA-GHP---SS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNL 507 (574)
T ss_pred HHHHHHHHHHHHHhcCCchheeeHHHhhhcc-CCh---hH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 3444455555666667888899999999984 222 11 22222222 233 456899999999999
Q ss_pred hCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh-cCHHHHHH
Q 012448 154 AGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS-VSRSVASV 206 (463)
Q Consensus 154 ak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~-~S~~~~~~ 206 (463)
+++.|. .+.+ .|.++.++.++-.-.|+-.+++-+-. -|...++.
T Consensus 508 a~~~p~-------~v~~--~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ 552 (574)
T smart00638 508 AKRDPR-------KVQE--VLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQR 552 (574)
T ss_pred HHhCch-------HHHH--HHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHH
Confidence 875432 2333 44446666555555555555544444 44444443
No 195
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=58.24 E-value=40 Score=38.01 Aligned_cols=145 Identities=13% Similarity=0.110 Sum_probs=92.4
Q ss_pred hcCChHHHHHccccCCCCcchHHHHHHHHHHH---hccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCch
Q 012448 37 DRFPLSVILNTLQTKPDVPGLEDTLVVCLERI---FKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDL 113 (463)
Q Consensus 37 ~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~i---l~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~ 113 (463)
....+|.|+..++... -++....++++. +...++.++.+++.++|-++++..+..+.+.+++.+...++-.+
T Consensus 347 ~~~~~p~l~pi~~~~~----~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD- 421 (700)
T KOG2137|consen 347 GPKMLPALKPIYSASD----PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID- 421 (700)
T ss_pred hhhhhHHHHHHhccCC----cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-
Confidence 4456777877777421 155555566554 45556678999999999999999999999999999999887662
Q ss_pred hHHHHHHHhhccCcHHHHH-HhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHH
Q 012448 114 EASCALQLLIDYEIYPLLL-DCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSL 192 (463)
Q Consensus 114 ~~~~~~~~~~~~~l~~~li-~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el 192 (463)
. ..+..-++|.|- .|....+..|+..++-++..+.+.-+-. .++ +.+++ .++ -....+..+.++..-+
T Consensus 422 --~----~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~-~v~-d~~lp--i~~-~~~~~dp~iv~~~~~i 490 (700)
T KOG2137|consen 422 --V----PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA-AVL-DELLP--ILK-CIKTRDPAIVMGFLRI 490 (700)
T ss_pred --H----HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH-HhH-HHHHH--HHH-HhcCCCcHHHHHHHHH
Confidence 2 223335666665 3888888888888888877776332211 111 12222 333 3334566666554444
Q ss_pred HHHHH
Q 012448 193 IVKLF 197 (463)
Q Consensus 193 ~v~ia 197 (463)
...++
T Consensus 491 ~~~l~ 495 (700)
T KOG2137|consen 491 YEALA 495 (700)
T ss_pred HHHHH
Confidence 44443
No 196
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=58.15 E-value=1.3e+02 Score=26.47 Aligned_cols=93 Identities=12% Similarity=0.052 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC
Q 012448 58 EDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN 137 (463)
Q Consensus 58 ~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d 137 (463)
.+.+-.+.+.+-+. ..........|..-|.|++|.|...|+.-+..++.|.+ .. ....+.+.+++.-++..+.+
T Consensus 18 w~~~l~icD~i~~~---~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg--~~-f~~ev~s~~fl~~L~~l~~~ 91 (133)
T smart00288 18 WELILEICDLINST---PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCG--SK-FHLEVASKEFLNELVKLIKP 91 (133)
T ss_pred HHHHHHHHHHHhCC---CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC--HH-HHHHHHhHHHHHHHHHHHcC
Confidence 44444455555222 33444567889999999999999999999999999973 23 55666677777777776666
Q ss_pred CchH--HHHHHHHHHHHHhCC
Q 012448 138 GNEE--VATASMDAIKKLAGF 156 (463)
Q Consensus 138 ~d~~--va~~A~~~L~~lak~ 156 (463)
+... |.+.++..+..-+..
T Consensus 92 ~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 92 KYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 5442 888888888877654
No 197
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=57.71 E-value=97 Score=34.21 Aligned_cols=148 Identities=14% Similarity=0.206 Sum_probs=73.3
Q ss_pred HhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHH----HHHHHhcc--------ccccchhhch--
Q 012448 16 SASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVV----CLERIFKT--------KYGASLIPHY-- 81 (463)
Q Consensus 16 ~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~----vL~~il~~--------~~~~~l~~~~-- 81 (463)
.-.-++.++..++++.++.+..-...+..- .+ +..+.++.. +.++.-.. .......+.|
T Consensus 417 ~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~-----~~--~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~ 489 (618)
T PF01347_consen 417 LLASLPFHVRRPTEELLKELFELAKSPKVK-----NS--PYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVP 489 (618)
T ss_dssp HHHHHHHT-----HHHHHHHHHHHT-HHHH-----T---HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTH
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHhCcccc-----CC--hhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHH
Confidence 333444555555667766665443333221 11 344444544 33333222 1122344444
Q ss_pred --HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCC---chHHHHHHHHHHHHHhCC
Q 012448 82 --MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLING---NEEVATASMDAIKKLAGF 156 (463)
Q Consensus 82 --~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~---d~~va~~A~~~L~~lak~ 156 (463)
...+..+.+..+...+.+++++||.+ ++. ..++.+...+.+. ...+...|+.+|.+++++
T Consensus 490 ~l~~~l~~~~~~~~~~~~~~~LkaLgN~-g~~--------------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 490 YLEQELKEAVSRGDEEEKIVYLKALGNL-GHP--------------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-T-G--------------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHhhcc-CCc--------------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 44455555577889999999999995 222 3455555555555 778888999999988766
Q ss_pred CCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHH
Q 012448 157 PNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIV 194 (463)
Q Consensus 157 ~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v 194 (463)
.| ..+.+ .|.++..+.++-.-.|+-.+.+
T Consensus 555 ~~-------~~v~~--~l~~I~~n~~e~~EvRiaA~~~ 583 (618)
T PF01347_consen 555 CP-------EKVRE--ILLPIFMNTTEDPEVRIAAYLI 583 (618)
T ss_dssp -H-------HHHHH--HHHHHHH-TTS-HHHHHHHHHH
T ss_pred Cc-------HHHHH--HHHHHhcCCCCChhHHHHHHHH
Confidence 54 12333 4444666555554455544433
No 198
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.50 E-value=3.5e+02 Score=31.07 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=60.9
Q ss_pred hHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhc
Q 012448 173 DLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRT 252 (463)
Q Consensus 173 ~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~ 252 (463)
.|.+.+.+.-.-+|+=.+|-.+.+++. ..+.+.+.. ..+.++..|+...|+-+|.-++++|+-++.-.. + .
T Consensus 333 ~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~--h~d~Ii~sLkterDvSirrravDLLY~mcD~~N-a-----k 403 (938)
T KOG1077|consen 333 QLGQFLSHRETNIRYLALESMCKLASS-EFSIDAVKK--HQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN-A-----K 403 (938)
T ss_pred HHHHHhhcccccchhhhHHHHHHHHhc-cchHHHHHH--HHHHHHHHhccccchHHHHHHHHHHHHHhchhh-H-----H
Confidence 444556667777888888999999865 666677764 489999999955999999999999999987321 1 1
Q ss_pred chHHHHHHHhcc
Q 012448 253 TLLQLLCSLIGN 264 (463)
Q Consensus 253 gi~~~L~~~i~~ 264 (463)
-|++-|..++..
T Consensus 404 ~IV~elLqYL~t 415 (938)
T KOG1077|consen 404 QIVAELLQYLET 415 (938)
T ss_pred HHHHHHHHHHhh
Confidence 345555566654
No 199
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=57.48 E-value=70 Score=35.52 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHh----------hccC-cHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC
Q 012448 91 ADSHSVKRLACKTVTCLLEDSDLEASCALQLL----------IDYE-IYPLLLDCLINGNEEVATASMDAIKKLAGFPNG 159 (463)
Q Consensus 91 h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~----------~~~~-l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~ 159 (463)
+++|.-|+.++..++.-++..+...- .++++ .+++ .+..|.+.+-=++.-|...|..+|+++|-.-.
T Consensus 442 ~~~p~skEraLe~LC~fIEDcey~~I-~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~- 519 (898)
T COG5240 442 ENDPDSKERALEVLCTFIEDCEYHQI-TVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNIS- 519 (898)
T ss_pred hhCchHHHHHHHHHHHHHhhcchhHH-HHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcc-
Confidence 46777888888888877776654333 33332 2334 45667777777788899999999999975532
Q ss_pred ccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhc
Q 012448 160 IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKAN 211 (463)
Q Consensus 160 l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sg 211 (463)
..+.+..+.. .|++.+..+|+.||=|+-=++-.+- ..++.+.++++.
T Consensus 520 -d~~~~~sv~~--~lkRclnD~DdeVRdrAsf~l~~~~--~~da~~pl~~sd 566 (898)
T COG5240 520 -DVVSPQSVEN--ALKRCLNDQDDEVRDRASFLLRNMR--LSDACEPLFSSD 566 (898)
T ss_pred -ccccHHHHHH--HHHHHhhcccHHHHHHHHHHHHhhh--hhhhhhcccccc
Confidence 2333334444 6777788899999999765554443 233334444443
No 200
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=57.43 E-value=52 Score=37.02 Aligned_cols=114 Identities=19% Similarity=0.192 Sum_probs=70.6
Q ss_pred HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448 118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF 197 (463)
Q Consensus 118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia 197 (463)
..+-++..-+++.++..+--++ -++...--+-++++...+-+ |.....+ .|-++....|..+|++.++=+-+-.
T Consensus 285 ~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i~p--~l~kLF~~~Dr~iR~~LL~~i~~~i 358 (690)
T KOG1243|consen 285 FPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRIIP--VLLKLFKSPDRQIRLLLLQYIEKYI 358 (690)
T ss_pred hhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccchhh--hHHHHhcCcchHHHHHHHHhHHHHh
Confidence 4445555667777776655555 23333334455555544333 5556666 6666889999999999776554433
Q ss_pred hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 198 SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 198 ~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
+.+-.-.+++-+|+.+..-+.||+|. +|--.+-.+..||.
T Consensus 359 ---~~Lt~~~~~d~I~phv~~G~~DTn~~-Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 359 ---DHLTKQILNDQIFPHVALGFLDTNAT-LREQTLKSMAVLAP 398 (690)
T ss_pred ---hhcCHHhhcchhHHHHHhhcccCCHH-HHHHHHHHHHHHHh
Confidence 22334456778999999999994554 45444444444444
No 201
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=56.92 E-value=1.5e+02 Score=26.63 Aligned_cols=76 Identities=17% Similarity=0.095 Sum_probs=61.4
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhc-CCchHHHHHHHHHHHHHhCC
Q 012448 78 IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLI-NGNEEVATASMDAIKKLAGF 156 (463)
Q Consensus 78 ~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~-d~d~~va~~A~~~L~~lak~ 156 (463)
.......|..=|.|++|.|.-+|+.-+..+++|.+ .. ..+.+.+.+++.-++..+. ..+..|.+.++..+..-+..
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG--~~-fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCG--TH-FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC--HH-HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 33467888999999999999999999999999963 33 6666777788887777775 57788999999999887644
No 202
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=56.80 E-value=70 Score=33.90 Aligned_cols=143 Identities=13% Similarity=0.101 Sum_probs=89.4
Q ss_pred cchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHh
Q 012448 55 PGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDC 134 (463)
Q Consensus 55 ~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~ 134 (463)
..+-.++..|+...++ ..+.++..+...+.+--=--++.=..+-++++..+++.... .. .... -..++..+..|
T Consensus 232 ~~y~~~L~~~~~~f~~--kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~-~~-f~~i--~~~lf~~la~c 305 (409)
T PF01603_consen 232 SSYHQQLSYCVVQFLE--KDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPP-EE-FQKI--MVPLFKRLAKC 305 (409)
T ss_dssp GGTHHHHHHHHHHHHH--H-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--H-HH-HHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCH-HH-HHHH--HHHHHHHHHHH
Confidence 4556666666666642 33344444555555544455666677788889998886522 11 2222 22588899999
Q ss_pred hcCCchHHHHHHHHHH------HHHhCCCCCc-cccccCCCcchhhHhhHh-hcCCchhHHHHHHHHHHHHhcCHHHHHH
Q 012448 135 LINGNEEVATASMDAI------KKLAGFPNGI-DIIFPADNKAATDLGNLV-AQCSSLGRVRVLSLIVKLFSVSRSVASV 206 (463)
Q Consensus 135 l~d~d~~va~~A~~~L------~~lak~~~~l-~~l~~~~~~~~~~L~~~~-~~~~~~vR~Rv~el~v~ia~~S~~~~~~ 206 (463)
+..+.-.||..|+..+ .-+..+...+ .+++ + .|.+.. .+=|..||-.++.++..+....+++++.
T Consensus 306 i~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~-----~--~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 306 ISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIF-----P--ALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHH-----H--HHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHH-----H--HHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999999998764 3333433211 2222 2 333222 2448999999999999999999999998
Q ss_pred HHhh
Q 012448 207 IFKA 210 (463)
Q Consensus 207 v~~s 210 (463)
|.++
T Consensus 379 ~~~~ 382 (409)
T PF01603_consen 379 CAQK 382 (409)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 203
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.82 E-value=1e+02 Score=33.43 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=76.7
Q ss_pred chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCC-chHHHHHHHHHHHHHh
Q 012448 76 SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLING-NEEVATASMDAIKKLA 154 (463)
Q Consensus 76 ~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~-d~~va~~A~~~L~~la 154 (463)
.+..++...+..-...|+..+|..|++-+++.+.-- ++. + ..-. .-++..+|..|-|+ +.+|.-.|++.|..+.
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~--P~k-v-~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~ 328 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGA--PDK-V-RTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVL 328 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccC--cHH-H-HHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 456677888888899999999999999999988642 022 1 1111 12455566555444 5789999999999885
Q ss_pred CCC--CCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhc
Q 012448 155 GFP--NGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSV 199 (463)
Q Consensus 155 k~~--~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~ 199 (463)
.-- .+++-.+- ++ +..+++.....++..|.-..-++-.+++.
T Consensus 329 ~~~~~~~l~~~~l-~i--alrlR~l~~se~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 329 EKASNDDLESYLL-NI--ALRLRTLFDSEDDKMRAAAFVLFGALAKL 372 (533)
T ss_pred Hhhhhcchhhhch-hH--HHHHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 332 23332221 11 12566677788888888877777777765
No 204
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=53.64 E-value=74 Score=27.98 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=54.4
Q ss_pred hHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhh-ccHHHHHhhcCC--CCcHHHHHhHHHHHHHHHh
Q 012448 173 DLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKA-NLLTLLEEGVSK--KNDTLETLSILELLYELAE 241 (463)
Q Consensus 173 ~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~s-gl~~~ll~eL~~--~~DvLv~lnalell~eLa~ 241 (463)
.|++.+.+.|+.+.+|.+.++=.+.+.....+..-+.+ .++..++.-+.+ ..|.-|+.-+++++...+.
T Consensus 41 aL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 41 AIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 44445667788889999999999999987755444444 777788888875 3699999999999999888
No 205
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=52.09 E-value=1.3e+02 Score=28.24 Aligned_cols=115 Identities=23% Similarity=0.153 Sum_probs=73.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHh--hcc----------------CcHHHHHHhhcC-CchHH
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLL--IDY----------------EIYPLLLDCLIN-GNEEV 142 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~--~~~----------------~l~~~li~~l~d-~d~~v 142 (463)
...+--.+.+|++.||..++..+..++++.. .-+.+.- ..+ ++...++..|+. .+..+
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk---~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~ 118 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGSK---PFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPV 118 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHccH---HHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 5566677889999999999999999998763 2122111 111 244455555554 47778
Q ss_pred HHHHHHHHHHHhCCCCCccccccCCCcc--hhhHhhHhhcCCchhHHHHHHHHHHHHhcCH
Q 012448 143 ATASMDAIKKLAGFPNGIDIIFPADNKA--ATDLGNLVAQCSSLGRVRVLSLIVKLFSVSR 201 (463)
Q Consensus 143 a~~A~~~L~~lak~~~~l~~l~~~~~~~--~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~ 201 (463)
-....+.|..+....|.-. ++.+.+. -+.+++.+.+.|..+|.=.+.++..+.+.++
T Consensus 119 l~q~lK~la~Lv~~tPY~r--L~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 119 LTQLLKCLAVLVQATPYHR--LPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHccCChhh--cCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 8888888888877776221 1223322 0255666777888888777777776666543
No 206
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=51.98 E-value=89 Score=28.06 Aligned_cols=69 Identities=13% Similarity=0.094 Sum_probs=54.3
Q ss_pred hHhhHhhcCCchhHHHHHHHHHHHHhcC-HHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 173 DLGNLVAQCSSLGRVRVLSLIVKLFSVS-RSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 173 ~L~~~~~~~~~~vR~Rv~el~v~ia~~S-~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
.|++.+.+.|..+..|.+.++-.+.+.- ......+.+.++++.+..-+.+..+.-|+.-+++++.+-+.
T Consensus 45 al~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 45 ALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4445566677888888888888888773 44555566788889988888765899999999999999886
No 207
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=51.75 E-value=15 Score=40.01 Aligned_cols=127 Identities=17% Similarity=0.205 Sum_probs=86.6
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc
Q 012448 81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI 160 (463)
Q Consensus 81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l 160 (463)
|.+.|..--..|-.-||.-.++.+-.++++. +. . ..+++.+.|+-|||.+..|+..|.=.|-++-...||+
T Consensus 192 ~levle~ls~d~i~~Vk~qvv~~VydLL~a~---pe-q-----e~nLl~L~INKlGDk~~kvsskasY~ilkLe~~hP~m 262 (821)
T COG5593 192 VLEVLEVLSHDPIQYVKKQVVRLVYDLLEAR---PE-Q-----EVNLLHLFINKLGDKRDKVSSKASYVILKLELLHPGM 262 (821)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHhcC---hH-H-----HHHHHHHHHHhhccchhhhhhhhhHHHHHHHhcCCch
Confidence 4555555555556789999999999988866 33 1 1268999999999999999999999999997777888
Q ss_pred cccccCCCcchhhHhhHhhcCCchhHHHHHHHHH---HHHhcCHHHHH-HHHhh--ccHHHHHhhcCC
Q 012448 161 DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIV---KLFSVSRSVAS-VIFKA--NLLTLLEEGVSK 222 (463)
Q Consensus 161 ~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v---~ia~~S~~~~~-~v~~s--gl~~~ll~eL~~ 222 (463)
+.|+-.++.. ..-.+|+.-|-|.|.++. .+..+++.... .+++. -+|..++.-+..
T Consensus 263 k~VV~d~Ied------f~f~pn~~~~s~yyalitLnqt~l~~~e~~van~lv~vyf~~f~kfl~n~~k 324 (821)
T COG5593 263 KEVVLDGIED------FYFKPNDLFRSRYYALITLNQTELENREKAVANKLVKVYFSIFRKFLENIPK 324 (821)
T ss_pred hHHHHhhhhH------heeccccccceeeeeehhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 6444333332 555678888888888764 45566655443 33221 245555554433
No 208
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=51.58 E-value=1.2e+02 Score=27.67 Aligned_cols=121 Identities=20% Similarity=0.129 Sum_probs=69.2
Q ss_pred ChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhch---HHHHHHhhcC-CCHHHHHHHHHH
Q 012448 28 NDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHY---MPFVQVGLTA-DSHSVKRLACKT 103 (463)
Q Consensus 28 s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~---~~~l~~gL~h-~~~~Vr~Lal~~ 103 (463)
+...+..++++ +...|++.+ ++.+-..+..+..+.+.-....+.+.+ ...+..-|+. ..+.++++++..
T Consensus 19 ~~~~l~~l~~r-----i~~LL~s~~--~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~ 91 (165)
T PF08167_consen 19 SKSALHKLVTR-----INSLLQSKS--AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIIT 91 (165)
T ss_pred CHHHHHHHHHH-----HHHHhCCCC--hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 44455555544 667777654 333333333444443332233343444 3334444444 466889999999
Q ss_pred HHHHHhCCchhHHHHHHHhhccC---cHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448 104 VTCLLEDSDLEASCALQLLIDYE---IYPLLLDCLINGNEEVATASMDAIKKLAGFPN 158 (463)
Q Consensus 104 l~~i~~~~~~~~~~~~~~~~~~~---l~~~li~~l~d~d~~va~~A~~~L~~lak~~~ 158 (463)
+.++......-.. +.+-+.-+. +++.++..+.+ ..+...++.+|..+-++.|
T Consensus 92 L~~l~~~~~~~p~-l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 92 LTRLFDLIRGKPT-LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred HHHHHHHhcCCCc-hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 9999976543234 555444433 44444444444 5688889999999877654
No 209
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=51.44 E-value=43 Score=31.63 Aligned_cols=89 Identities=22% Similarity=0.241 Sum_probs=66.6
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC
Q 012448 78 IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP 157 (463)
Q Consensus 78 ~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~ 157 (463)
...|.+-+..||.+-..--|-+|.+.+..++++. ..+. +...+. .+++.+-..|...|.+|-..++++|..+....
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~-~~~k-ilPvlP--qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERG-GGEK-ILPVLP--QLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhc-chhH-HHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3457999999999999999999999999998882 1123 444433 36777779999999999999999999997666
Q ss_pred CCccccccCCCcchhhHhh
Q 012448 158 NGIDIIFPADNKAATDLGN 176 (463)
Q Consensus 158 ~~l~~l~~~~~~~~~~L~~ 176 (463)
++ +.+.+.+ ++++
T Consensus 112 ~~----vG~aLvP--yyrq 124 (183)
T PF10274_consen 112 DM----VGEALVP--YYRQ 124 (183)
T ss_pred hh----hhHHHHH--HHHH
Confidence 53 3334444 6663
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.87 E-value=5.2e+02 Score=31.13 Aligned_cols=216 Identities=15% Similarity=0.161 Sum_probs=134.6
Q ss_pred cchHHHHHH---HHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHH
Q 012448 55 PGLEDTLVV---CLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLL 131 (463)
Q Consensus 55 ~~~~~~~~~---vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~l 131 (463)
++..+|+.+ =|+.=....+|++-.|-+++.|. +.=.++| |+.-++|-++-. .= .+.+...-||+|.+
T Consensus 448 ~FFteQLTAFevWLd~gse~r~PPeQLPiVLQVLL----SQvHRlR--AL~LL~RFLDlG---pW-AV~LaLsVGIFPYV 517 (1387)
T KOG1517|consen 448 PFFTEQLTAFEVWLDYGSESRTPPEQLPIVLQVLL----SQVHRLR--ALVLLARFLDLG---PW-AVDLALSVGIFPYV 517 (1387)
T ss_pred chHHHHHHHHHHHHHhccccCCChHhcchHHHHHH----HHHHHHH--HHHHHHHHhccc---hh-hhhhhhccchHHHH
Confidence 455555555 44444445555554444433322 1122333 444567766655 44 56677788999999
Q ss_pred HHhhcCCchHHHHHHHHHHHHHhCCCCCcc-ccccCCCcchhhHhhHhhc---CCchhHHHHHHHHHHHHhcCHHHHHHH
Q 012448 132 LDCLINGNEEVATASMDAIKKLAGFPNGID-IIFPADNKAATDLGNLVAQ---CSSLGRVRVLSLIVKLFSVSRSVASVI 207 (463)
Q Consensus 132 i~~l~d~d~~va~~A~~~L~~lak~~~~l~-~l~~~~~~~~~~L~~~~~~---~~~~vR~Rv~el~v~ia~~S~~~~~~v 207 (463)
+..||.+-.++.-.-.=+=.+|..-.+..| -++..+... +..+.+.. -+++-|-=.-=+++.|..-=.-.-+.|
T Consensus 518 LKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~--YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~ac 595 (1387)
T KOG1517|consen 518 LKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYK--YFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKAC 595 (1387)
T ss_pred HHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCce--eEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHh
Confidence 999999999998877666666654444443 234333322 22211111 122223222223334443334455789
Q ss_pred HhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHH-hcchHHHHHHHhcccccchhhhhhhhhHhhhhcc
Q 012448 208 FKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLS-RTTLLQLLCSLIGNSATETILRSRAIMISGRLLS 284 (463)
Q Consensus 208 ~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~-~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~ 284 (463)
-+.+++...+.-|.+..+.|++.=++=+|..|=+.-.-+++.= +.+-..||+..+.+ +-|-+|.-|+.+.|-.+.
T Consensus 596 l~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD--~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 596 LNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSD--PVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred ccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcC--ccHHHHHHHHHHHHHHhc
Confidence 9999999999999883389999999999999999666677764 56888999888875 556678777777777665
No 211
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=50.60 E-value=1.3e+02 Score=25.72 Aligned_cols=64 Identities=14% Similarity=0.191 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhh--cCCCCcHHHHHhHHHHHHHHHh-hHHHHHHH
Q 012448 185 GRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEG--VSKKNDTLETLSILELLYELAE-IQHSAEFL 249 (463)
Q Consensus 185 vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~e--L~~~~DvLv~lnalell~eLa~-t~~g~~~L 249 (463)
.|.-+..++.+++-.+++.-+.+.+-|=++.++++ +++ ..+.+|=-|+=.++-|.+ .++.-+++
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~-~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDD-HNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCc-ccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 36667789999999999999999999999999998 555 889999999999999999 55544444
No 212
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.44 E-value=5.4e+02 Score=31.19 Aligned_cols=110 Identities=13% Similarity=0.189 Sum_probs=74.8
Q ss_pred hHHHHHccccCCCCcchHHHHHH-HHHHHhccccccchhh-------chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCc
Q 012448 41 LSVILNTLQTKPDVPGLEDTLVV-CLERIFKTKYGASLIP-------HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSD 112 (463)
Q Consensus 41 l~~L~~~L~~~~~~~~~~~~~~~-vL~~il~~~~~~~l~~-------~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~ 112 (463)
+..+++.|+.++ -..+..+.. |...+.+.++.+++-+ .+.+.|+.=+..-++-||.=++.-..++.+...
T Consensus 314 l~~lv~lld~es--~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s 391 (1251)
T KOG0414|consen 314 LTLLVDLLDSES--YTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHS 391 (1251)
T ss_pred HHHHHHhcCCch--HHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccC
Confidence 345566666554 445554444 4444445555444322 246677777888899999999999999876442
Q ss_pred hhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448 113 LEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN 158 (463)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~ 158 (463)
.+.. .-++++.+++.+++|...=|-+.|++.++.+..+.|
T Consensus 392 ~p~~------~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 392 IPLG------SRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred CCcc------HHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 1111 123678889999999999999999999999866655
No 213
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=49.58 E-value=47 Score=39.86 Aligned_cols=124 Identities=14% Similarity=0.064 Sum_probs=88.9
Q ss_pred CChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448 39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA 118 (463)
Q Consensus 39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~ 118 (463)
-.+|.||.|+.+.. +..+-.+..|+..+++.-..+.. ..+.+-+..-+..-+..+|+.+.-.+-.++... ..
T Consensus 816 ~~l~~l~~~~~s~~--~a~r~~~ar~i~~~~k~~~~e~m-~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~---l~-- 887 (1549)
T KOG0392|consen 816 SLLPRLFFFVRSIH--IAVRYAAARCIGTMFKSATRETM-ATVINGFLPLLGDLDKFVRRQGADELIELLDAV---LM-- 887 (1549)
T ss_pred hhhhHHHHhcccch--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccchhhHhhhhhHHHHHHHHHHh---hc--
Confidence 35789999999876 66666666688888765544433 346778888889999999999988888776644 11
Q ss_pred HHH-hhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcc
Q 012448 119 LQL-LIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKA 170 (463)
Q Consensus 119 ~~~-~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~ 170 (463)
..+ --.+-+++.+..|+.|...+|...|.+++..+-...+--.-+.++..++
T Consensus 888 ~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls 940 (1549)
T KOG0392|consen 888 VGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLS 940 (1549)
T ss_pred ccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCcccc
Confidence 111 1233577888899999999999999999999877665323455665554
No 214
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=49.40 E-value=1.6e+02 Score=38.32 Aligned_cols=223 Identities=17% Similarity=0.151 Sum_probs=134.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID 161 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~ 161 (463)
..++--|+.+++|.+|.-....+.. + ..+.+.+++.+......+.++..+....+...+.+++...|
T Consensus 531 ~~ll~~aia~~~~~i~~~v~~~l~~---~-------~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~--- 597 (2341)
T KOG0891|consen 531 SALLTVAIADTDPDIRIRVLSSLNE---R-------FDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP--- 597 (2341)
T ss_pred HHHHHHhccCCCcchhhhHHhhhcc---c-------hhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccH---
Confidence 5566778899999998888777762 1 22234556777778889999999999999999888876554
Q ss_pred ccccCCCcchhhHhhHh----hcCCchhHHHHHHHHHHHH----hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHH
Q 012448 162 IIFPADNKAATDLGNLV----AQCSSLGRVRVLSLIVKLF----SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSIL 233 (463)
Q Consensus 162 ~l~~~~~~~~~~L~~~~----~~~~~~vR~Rv~el~v~ia----~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnal 233 (463)
+-+.+ .++... ...+-..-.|+-+.-.+.. ..++......+ ..++..++.-+.+ .+-++..+++
T Consensus 598 ----a~vl~--~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v-~~~l~~~~~~~~~-~~s~~~~~~~ 669 (2341)
T KOG0891|consen 598 ----AYVLP--SLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYV-GPILLVLLPKLQD-PSSGVEKAVL 669 (2341)
T ss_pred ----HHHhH--HHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhc-CchHHHHHHHHhc-cchhhHHHHH
Confidence 12222 333111 1111111223222222111 11222222222 3566888888999 8999999999
Q ss_pred HHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccc-
Q 012448 234 ELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFL- 311 (463)
Q Consensus 234 ell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~- 311 (463)
+.+.+|+. +-+-.+..++ -.+..+.+.+.+ ...+.-|.-+....|=+....+.. + .|... ||.+++.+++..
T Consensus 670 ~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~-~s~~~rr~aslk~l~~l~s~~~~~--v-~p~~~-~P~ll~~l~~~~~ 743 (2341)
T KOG0891|consen 670 ETIGELCAVGGEEMVKWVD-ELFSLIIKMLQD-QSSLGKRLAALKALGQLESSTGYV--V-DPYLD-YPELLDILINILK 743 (2341)
T ss_pred HHHHHHHHhccchhhhccc-hHHHHHHHHHHH-hhhhhchhHHHHHhhhhhcccceE--e-ccccc-ChHHHHHHHHHHh
Confidence 99999999 5444444444 556666666653 233333333333444444422221 2 23445 888888776544
Q ss_pred cCCChhhhhHHHHHHHhhcC
Q 012448 312 QSQDSDECESALEALGQIGS 331 (463)
Q Consensus 312 ~~~d~~~~~~A~dtlG~Igs 331 (463)
++....+.-.|+..+|..|.
T Consensus 744 te~~~~ir~~~v~~~g~~g~ 763 (2341)
T KOG0891|consen 744 TEQSSTIRREAIRLLGLLGA 763 (2341)
T ss_pred HhhhhHHHHHHHHHhhhhcc
Confidence 45667888889999987764
No 215
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.14 E-value=6.3e+02 Score=31.59 Aligned_cols=184 Identities=15% Similarity=0.076 Sum_probs=104.5
Q ss_pred HHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhch---HHHHHHhhcCCCHHHHHHH---HHHHHHHH
Q 012448 35 FLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHY---MPFVQVGLTADSHSVKRLA---CKTVTCLL 108 (463)
Q Consensus 35 ~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~---~~~l~~gL~h~~~~Vr~La---l~~l~~i~ 108 (463)
-.-+.++..|+..|.+. ++ ..++.+|..|.-+++..+.+..-.++ -..+-+-...=...||+.+ ++.++++.
T Consensus 1035 ~y~neIl~eLL~~lt~k-ew-RVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1035 EYLNEILDELLVNLTSK-EW-RVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHhccch-hH-HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456778888888653 23 36789999888888776655554444 4444455555567888875 55566654
Q ss_pred hCCc---hhHHHHHHHhhccCcHHHHHH-hhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcC-Cc
Q 012448 109 EDSD---LEASCALQLLIDYEIYPLLLD-CLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQC-SS 183 (463)
Q Consensus 109 ~~~~---~~~~~~~~~~~~~~l~~~li~-~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~-~~ 183 (463)
-+.. +... .. .+.+ .++|.++. .+...-.+|.+.+++.+.+++|+.++.=.-+-+++++ .|.+....- +.
T Consensus 1113 vr~~d~~~~~~-~~-~~l~-~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp--~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1113 VRICDVTNGAK-GK-EALD-IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIP--LLLNAYSELEPQ 1187 (1702)
T ss_pred hhhcccCCccc-HH-HHHH-HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHH--HHHHHccccchH
Confidence 3221 2121 12 2222 46777773 5557778999999999999999997642223334444 333222211 11
Q ss_pred h---hHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHH
Q 012448 184 L---GRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLE 228 (463)
Q Consensus 184 ~---vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv 228 (463)
+ +-+|.++. +......--++....+..++-+-.|+.. -|+-|
T Consensus 1188 vLnYls~r~~~~--e~ealDt~R~s~aksspmmeTi~~ci~~-iD~~v 1232 (1702)
T KOG0915|consen 1188 VLNYLSLRLINI--ETEALDTLRASAAKSSPMMETINKCINY-IDISV 1232 (1702)
T ss_pred HHHHHHHhhhhh--HHHHHHHHHHhhhcCCcHHHHHHHHHHh-hhHHH
Confidence 1 12233221 1122222334555666777777777777 66543
No 216
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.73 E-value=62 Score=33.15 Aligned_cols=133 Identities=20% Similarity=0.155 Sum_probs=87.8
Q ss_pred HHHHccccCCCCcchHHHHHHHHH--HHhccccccchhhc---hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHH
Q 012448 43 VILNTLQTKPDVPGLEDTLVVCLE--RIFKTKYGASLIPH---YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASC 117 (463)
Q Consensus 43 ~L~~~L~~~~~~~~~~~~~~~vL~--~il~~~~~~~l~~~---~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~ 117 (463)
+.+..|.+.+ ++.-|+-|. +.++..|+..+.++ +.-+++..++.+...|-+.+|-.++-+...-+ ..
T Consensus 92 ~~l~~L~s~d-----W~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln--~~- 163 (334)
T KOG2933|consen 92 QALKKLSSDD-----WEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLN--NS- 163 (334)
T ss_pred HHHHHhchHH-----HHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH--HH-
Confidence 4455555543 444455222 23356677766665 47888999999999999999999999886442 12
Q ss_pred HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHH
Q 012448 118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLI 193 (463)
Q Consensus 118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~ 193 (463)
+-+ ..| +++.+|...=.+.+.=|-..|-++|..+-+|. -+..+++ +|.+.+.+.+..+|.-.+-++
T Consensus 164 i~~-~ld-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v------tp~~~L~--~L~~~~~~~n~r~r~~a~~~~ 229 (334)
T KOG2933|consen 164 IDQ-ELD-DLVTQLLHKASQDNRFVREDAEKALVAMVNHV------TPQKLLR--KLIPILQHSNPRVRAKAALCF 229 (334)
T ss_pred HHH-HHH-HHHHHHHhhhcccchHHHHHHHHHHHHHHhcc------ChHHHHH--HHHHHHhhhchhhhhhhhccc
Confidence 333 222 46666666666667778888999999887764 3444555 777777777777776554443
No 217
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=48.65 E-value=1.1e+02 Score=31.35 Aligned_cols=102 Identities=16% Similarity=0.052 Sum_probs=66.5
Q ss_pred HHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCc------hhHHH
Q 012448 44 ILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSD------LEASC 117 (463)
Q Consensus 44 L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~------~~~~~ 117 (463)
|+..|.+++ .+..+.+..+|+++-.......+.+.+-..+. -+|.+|.-|+.-+.+-..... ....
T Consensus 143 lLpGLede~--sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~- 214 (307)
T PF04118_consen 143 LLPGLEDEG--SEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSLSSEE- 214 (307)
T ss_pred hccccccCC--chHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccccchHH-
Confidence 455566544 56777777788888666555545444433332 578889988888888665432 1112
Q ss_pred HHH-HhhccC-cHHHHHHhhcCCchHHHHHHHHHHHHH
Q 012448 118 ALQ-LLIDYE-IYPLLLDCLINGNEEVATASMDAIKKL 153 (463)
Q Consensus 118 ~~~-~~~~~~-l~~~li~~l~d~d~~va~~A~~~L~~l 153 (463)
... +-.+++ ++..+..|++|+++=|-+.+.+.|-.-
T Consensus 215 ~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~ 252 (307)
T PF04118_consen 215 QEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSH 252 (307)
T ss_pred HHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHh
Confidence 222 234455 677788999999999999999997543
No 218
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=48.33 E-value=1.9e+02 Score=28.91 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhc----CCCCcHHHHHhHHHHHHHHHh--hHHHHHHHHhcchHHHHHH
Q 012448 187 VRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGV----SKKNDTLETLSILELLYELAE--IQHSAEFLSRTTLLQLLCS 260 (463)
Q Consensus 187 ~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL----~~~~DvLv~lnalell~eLa~--t~~g~~~L~~~gi~~~L~~ 260 (463)
|.++.++=-+|+| +|.=....++.+.-.+.-=| +++.-.-+|++++-++..|++ .++-.+||.++.++.....
T Consensus 68 cnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr 146 (262)
T PF04078_consen 68 CNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR 146 (262)
T ss_dssp HHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH
Confidence 3444555678886 45545555566543333333 333468899999999999999 7888899999999999999
Q ss_pred HhcccccchhhhhhhhhHhhhhccccccchhc
Q 012448 261 LIGNSATETILRSRAIMISGRLLSKDDSHMFI 292 (463)
Q Consensus 261 ~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~ 292 (463)
.++.. +-+.++-|.-|...|+..+.-++|+
T Consensus 147 ~me~G--selSKtvAtfIlqKIL~dd~GL~yi 176 (262)
T PF04078_consen 147 IMEFG--SELSKTVATFILQKILLDDVGLNYI 176 (262)
T ss_dssp HHHHS---HHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHhc--cHHHHHHHHHHHHHHHcchhHHHHH
Confidence 98753 3445555666655555533334444
No 219
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=47.08 E-value=1.3e+02 Score=37.25 Aligned_cols=178 Identities=16% Similarity=0.172 Sum_probs=120.2
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCC-chHHHHHHHHHHHHHhCCC
Q 012448 79 PHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLING-NEEVATASMDAIKKLAGFP 157 (463)
Q Consensus 79 ~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~-d~~va~~A~~~L~~lak~~ 157 (463)
.++++.|++=|......+-+..+.-|.++.=+. +.+....+...|-+..|+.|.-.. ...--+..+++|.+|+.|.
T Consensus 393 rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRA---D~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHc 469 (2195)
T KOG2122|consen 393 RGFMEAVVAQLISAPEELLQVYASVLRNLSWRA---DSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHC 469 (2195)
T ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHHhccccc---cccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcc
Confidence 346888888888888777777766666654333 333667788888888888875544 3366677899999998886
Q ss_pred CCc--cccccCCCcc-----------hhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCC
Q 012448 158 NGI--DIIFPADNKA-----------ATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKN 224 (463)
Q Consensus 158 ~~l--~~l~~~~~~~-----------~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~ 224 (463)
-.= ++.--.+.+. ...|+ ++.+...++|. |-++| | .-++.-+...+.+++..||..|++ .
T Consensus 470 teNKA~iCaVDGALaFLVg~LSY~~qs~tLa-IIEsaGGILRN-VSS~I---A-t~E~yRQILR~~NCLq~LLQ~LKS-~ 542 (2195)
T KOG2122|consen 470 TENKAEICAVDGALAFLVGTLSYEGQSNTLA-IIESAGGILRN-VSSLI---A-TCEDYRQILRRHNCLQTLLQHLKS-H 542 (2195)
T ss_pred cccchhhhcccchHHHHHhhccccCCcchhh-hhhcCccHHHH-HHhHh---h-ccchHHHHHHHhhHHHHHHHHhhh-c
Confidence 311 1111112221 12344 55445555543 33332 2 446666778888999999999998 6
Q ss_pred cHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccc
Q 012448 225 DTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSA 266 (463)
Q Consensus 225 DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~ 266 (463)
-.-+--|+.=.|-.|.. .++--+||-..|-+..|-++|.+..
T Consensus 543 SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKh 585 (2195)
T KOG2122|consen 543 SLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKH 585 (2195)
T ss_pred ceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhh
Confidence 55556677766777666 9999999999999999999998644
No 220
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=47.08 E-value=1.6e+02 Score=26.47 Aligned_cols=65 Identities=9% Similarity=0.055 Sum_probs=50.9
Q ss_pred HhhcCCchhHHHHHHHHHHHHhcCHHHHH-HHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 177 LVAQCSSLGRVRVLSLIVKLFSVSRSVAS-VIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 177 ~~~~~~~~vR~Rv~el~v~ia~~S~~~~~-~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
.+.+.|+.+.+|.+.++-.+.+--...+. .+.+.++++.+..-+.+..+.=|+--+++++.+.+.
T Consensus 45 Rl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 45 RLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 44567777888888888888887665443 556677888888888776789999999999999887
No 221
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=46.37 E-value=20 Score=32.91 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=30.5
Q ss_pred hhhhhhHHHHHHHhccccC-CChhhhhHHHHHHHhhcC
Q 012448 295 SSAKTVISAIDGRLGFLQS-QDSDECESALEALGQIGS 331 (463)
Q Consensus 295 ~~~k~~p~~l~~~f~~~~~-~d~~~~~~A~dtlG~Igs 331 (463)
|..+ ||.+++.+++.+.. ++..++-.|+-.+|.||.
T Consensus 4 PY~~-yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA 40 (160)
T PF11865_consen 4 PYLD-YPELLDILLNILKTEQSQSIRREALRVLGILGA 40 (160)
T ss_pred hHHH-hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 4556 99999999887754 468999999999999998
No 222
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=45.84 E-value=73 Score=30.22 Aligned_cols=97 Identities=11% Similarity=0.149 Sum_probs=58.9
Q ss_pred cHHHHHHhhcC------CchHHHHHHHHHHHHHhCCCCCccccccCCCcc--hhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448 127 IYPLLLDCLIN------GNEEVATASMDAIKKLAGFPNGIDIIFPADNKA--ATDLGNLVAQCSSLGRVRVLSLIVKLFS 198 (463)
Q Consensus 127 l~~~li~~l~d------~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~--~~~L~~~~~~~~~~vR~Rv~el~v~ia~ 198 (463)
.+..++.+... ....--.-.+.++.++++++.|-+.++++.... -++|.+...+. +.+|+|...=+++=+.
T Consensus 53 ~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNcc 131 (192)
T PF04063_consen 53 YLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCC 131 (192)
T ss_pred HHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhh
Confidence 44455555544 222233456788999999999998888766432 23666566666 6777765443333333
Q ss_pred cCHHHHHHHHh---hccHHHHHhhcCCCCc
Q 012448 199 VSRSVASVIFK---ANLLTLLEEGVSKKND 225 (463)
Q Consensus 199 ~S~~~~~~v~~---sgl~~~ll~eL~~~~D 225 (463)
...+..+.... -++++.++.=|.+ ++
T Consensus 132 Fd~~~H~~LL~~~~~~iLp~LLlPLaG-pE 160 (192)
T PF04063_consen 132 FDTDSHEWLLSDDEVDILPYLLLPLAG-PE 160 (192)
T ss_pred ccHhHHHHhcCchhhhhHHHHHhhccC-CC
Confidence 55555455444 3688888877776 44
No 223
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=45.33 E-value=2.1e+02 Score=25.11 Aligned_cols=68 Identities=21% Similarity=0.152 Sum_probs=50.7
Q ss_pred HhhHhhcCCchhHHHHHHHHHHHHhcCHH-HHHHHHhhccHHHHHhhcCCCCc-HHHHHhHHHHHHHHHh
Q 012448 174 LGNLVAQCSSLGRVRVLSLIVKLFSVSRS-VASVIFKANLLTLLEEGVSKKND-TLETLSILELLYELAE 241 (463)
Q Consensus 174 L~~~~~~~~~~vR~Rv~el~v~ia~~S~~-~~~~v~~sgl~~~ll~eL~~~~D-vLv~lnalell~eLa~ 241 (463)
|++.+.+.|+.+..|.+.++-.+.+.... ....+...++++.+..-+.++.+ ..|+.-+++++.+.+.
T Consensus 42 l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 42 LKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 33455567788888888888888888544 44566677788888888877433 3389999999988887
No 224
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=44.75 E-value=3e+02 Score=26.62 Aligned_cols=128 Identities=16% Similarity=0.091 Sum_probs=70.4
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhCC-chhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccC
Q 012448 88 GLTADSHSVKRLACKTVTCLLEDS-DLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPA 166 (463)
Q Consensus 88 gL~h~~~~Vr~Lal~~l~~i~~~~-~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~ 166 (463)
.-+..++.+..-.++.+.....|. .... -++..+......+.......+...+.++-+..+. .|
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~----------~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r---~f-- 73 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVP----------PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR---HF-- 73 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchh----------HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch---HH--
Confidence 334456666666666666666555 1111 1222333333444444445566666666655541 11
Q ss_pred CCcchhhHhhHhhc---------CCchhHHHH-H---HHHHHHHhcCHHHHHHHHhhccHHHHHhhc-CCCCcHHHHHhH
Q 012448 167 DNKAATDLGNLVAQ---------CSSLGRVRV-L---SLIVKLFSVSRSVASVIFKANLLTLLEEGV-SKKNDTLETLSI 232 (463)
Q Consensus 167 ~~~~~~~L~~~~~~---------~~~~vR~Rv-~---el~v~ia~~S~~~~~~v~~sgl~~~ll~eL-~~~~DvLv~lna 232 (463)
+ .|++.+.. .+...+.+. | ..+-.|++..|+.. ..+++.+-..| .+ +|.-++..+
T Consensus 74 ---~--~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~-~~~~~~ala 142 (234)
T PF12530_consen 74 ---P--FLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQS-CDEVAQALA 142 (234)
T ss_pred ---H--HHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhcc-ccHHHHHHH
Confidence 2 23322222 222222221 2 35667777788722 25667777777 67 899999999
Q ss_pred HHHHHHHHh
Q 012448 233 LELLYELAE 241 (463)
Q Consensus 233 lell~eLa~ 241 (463)
+|.++.|++
T Consensus 143 le~l~~Lc~ 151 (234)
T PF12530_consen 143 LEALAPLCE 151 (234)
T ss_pred HHHHHHHHH
Confidence 999999993
No 225
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=44.64 E-value=5.6e+02 Score=29.72 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=54.7
Q ss_pred CCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHH-H----HHHHhcchH
Q 012448 181 CSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHS-A----EFLSRTTLL 255 (463)
Q Consensus 181 ~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g-~----~~L~~~gi~ 255 (463)
.|+..|.|+.+.+-+| |.|+.+.+.|+|. +- .+ + .|.++|.=|+..|.++.....| + +-+++..+.
T Consensus 17 vdsa~KqqA~~y~~qi-KsSp~aw~Icie~--l~---~~--t-s~d~vkf~clqtL~e~vrekyne~nl~elqlvR~sv~ 87 (980)
T KOG2021|consen 17 VDSATKQQAIEYLNQI-KSSPNAWEICIEL--LI---NE--T-SNDLVKFYCLQTLIELVREKYNEANLNELQLVRFSVT 87 (980)
T ss_pred ccHHHHHHHHHHHHhh-cCCccHHHHHHHH--HH---hh--c-ccchhhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 4677899999999888 5789999999852 21 12 2 7889999999999999985555 2 334455566
Q ss_pred HHHHHHhcccc
Q 012448 256 QLLCSLIGNSA 266 (463)
Q Consensus 256 ~~L~~~i~~~~ 266 (463)
+-+.....+.+
T Consensus 88 swlk~qvl~ne 98 (980)
T KOG2021|consen 88 SWLKFQVLGNE 98 (980)
T ss_pred HHHHHHHhCcc
Confidence 55555554544
No 226
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=44.34 E-value=1.4e+02 Score=26.52 Aligned_cols=68 Identities=24% Similarity=0.185 Sum_probs=52.0
Q ss_pred HhhHhhcCCchhHHHHHHHHHHHHhcCHHHH-HHHHhhccHHHHHhhcCCC-CcHH--HHHhHHHHHHHHHh
Q 012448 174 LGNLVAQCSSLGRVRVLSLIVKLFSVSRSVA-SVIFKANLLTLLEEGVSKK-NDTL--ETLSILELLYELAE 241 (463)
Q Consensus 174 L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~-~~v~~sgl~~~ll~eL~~~-~DvL--v~lnalell~eLa~ 241 (463)
|++.+.+.|..+.+|++.++-.+.+...+.+ ..+....+++.+..-+.++ .+.. ||--++++|.+.+.
T Consensus 47 l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 47 LRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3335556888899999999999999985555 5556677788888866653 4444 99999999999888
No 227
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=43.64 E-value=65 Score=27.47 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=47.3
Q ss_pred HHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcc
Q 012448 228 ETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLS 284 (463)
Q Consensus 228 v~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~ 284 (463)
.|..++++|.-|+. .+.--..+...|++..|.+.-.-...+|+.|-.|+++.-++.-
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e 59 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCE 59 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHh
Confidence 36788999999999 8888888888999999998877778999998888877666554
No 228
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=43.52 E-value=63 Score=32.20 Aligned_cols=143 Identities=14% Similarity=0.161 Sum_probs=92.6
Q ss_pred HHHHHhccccccc----hhhch----HHHHHHhhc-CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHh
Q 012448 64 CLERIFKTKYGAS----LIPHY----MPFVQVGLT-ADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDC 134 (463)
Q Consensus 64 vL~~il~~~~~~~----l~~~~----~~~l~~gL~-h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~ 134 (463)
+|..+ +.||.. +..++ -+|+..+.. .|....|-.++--||.++++++. + +..-+...+++|+.+.-
T Consensus 102 LlQcv--ASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~--e-Vi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 102 LLQCV--ASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQ--E-VIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHH--hcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcH--H-HHHHHHHhhhHHHHHHH
Confidence 56666 667752 32222 566666664 46899999999999999998832 3 77778888999999988
Q ss_pred hcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHH
Q 012448 135 LINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLT 214 (463)
Q Consensus 135 l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~ 214 (463)
+-.+.+.-++.|..++.+|-....|+. +. |.-||=+..|+ ..|.
T Consensus 177 me~GSelSKtvA~fIlqKIlldD~GL~-----------Yi------------Cqt~eRF~av~-------------~~L~ 220 (293)
T KOG3036|consen 177 MESGSELSKTVATFILQKILLDDVGLY-----------YI------------CQTAERFSAVA-------------LVLG 220 (293)
T ss_pred HhcccHHHHHHHHHHHHHHhhccccHH-----------HH------------HHhHHHHHHHH-------------HHHH
Confidence 888888888889999988864443332 11 11122111111 2333
Q ss_pred HHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHH
Q 012448 215 LLEEGVSKKNDTLETLSILELLYELAEIQHSAE 247 (463)
Q Consensus 215 ~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~ 247 (463)
+++..+-+..+.-+-++++.|.-.|...++...
T Consensus 221 kmv~~l~~~ps~RllKhviRcYlrLsdnprar~ 253 (293)
T KOG3036|consen 221 KMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA 253 (293)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 333344343777777778877777777665444
No 229
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=43.25 E-value=3.8e+02 Score=27.36 Aligned_cols=190 Identities=18% Similarity=0.210 Sum_probs=112.4
Q ss_pred HHHHHhhhhccCCCCCChHHHHHHHhcCChH--HHHHccccCC---CC--------cchHHHHHHHHHHHhcccccc---
Q 012448 12 QLLDSASDFAYHPGVQNDAAAKKFLDRFPLS--VILNTLQTKP---DV--------PGLEDTLVVCLERIFKTKYGA--- 75 (463)
Q Consensus 12 ~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~--~L~~~L~~~~---~~--------~~~~~~~~~vL~~il~~~~~~--- 75 (463)
.-++.-+.+..| .+...|+++++.+.+. .+-..+.... +. +..|......+=.++...++.
T Consensus 75 ~~LrLL~~iv~f---~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~ 151 (330)
T PF11707_consen 75 PALRLLTAIVSF---DGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKR 151 (330)
T ss_pred HHHHHHHHHHcc---CCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHH
Confidence 445555666665 2448999999888765 4555553322 00 033333333333333333332
Q ss_pred chhh--chHHHHHHhhcCCCHHHHHHHHHHHHH-HHhCCchhHHHHHHHhhccCcHHHHHHhhcCCch----HHHHHHHH
Q 012448 76 SLIP--HYMPFVQVGLTADSHSVKRLACKTVTC-LLEDSDLEASCALQLLIDYEIYPLLLDCLINGNE----EVATASMD 148 (463)
Q Consensus 76 ~l~~--~~~~~l~~gL~h~~~~Vr~Lal~~l~~-i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~----~va~~A~~ 148 (463)
.+.. .+...+-+||...++.+-...+..+.. ++.+..-+.. .--.+-+...+..+...-...+. .++..|-+
T Consensus 152 ~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~-~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~ 230 (330)
T PF11707_consen 152 DLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS-TKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHE 230 (330)
T ss_pred HHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh-hhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHH
Confidence 2222 248889999999999999999999985 5554432222 22233444566666665566666 99999999
Q ss_pred HHHHHhCCCCCccccccCCCc--------------c------hhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHH
Q 012448 149 AIKKLAGFPNGIDIIFPADNK--------------A------ATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASV 206 (463)
Q Consensus 149 ~L~~lak~~~~l~~l~~~~~~--------------~------~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~ 206 (463)
.|..++..+. --++|+.+.. . -..|-.++..-...--.|-.+++++|.+..||+...
T Consensus 231 fL~~lcT~p~-~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp~e~~~q~~Lvl~Il~~~PeLva~ 307 (330)
T PF11707_consen 231 FLLALCTDPK-HGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKPWEDDRQQELVLKILKACPELVAP 307 (330)
T ss_pred HHHHHhcCCC-cccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCCCccHHHHHHHHHHHHHChHHHHH
Confidence 9999997664 3344543200 0 012222333334444457778999999999988654
No 230
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=42.98 E-value=3.2e+02 Score=26.43 Aligned_cols=209 Identities=18% Similarity=0.202 Sum_probs=126.2
Q ss_pred hHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 012448 41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQ 120 (463)
Q Consensus 41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~ 120 (463)
||.|++.+.... .+......-..|-.+ ..+.....+.+..-|+...+.+...++-.+.+.+.++..+++..-+ ..+
T Consensus 2 l~~L~~~l~~~~-~~~~~~~~L~~L~~l--~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~-~L~ 77 (234)
T PF12530_consen 2 LPLLLYKLGKIS-DPELQLPLLEALPSL--ACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFP-FLQ 77 (234)
T ss_pred hHHHHHHhcCCC-ChHHHHHHHHHHHHH--hccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHH-HHH
Confidence 577788765543 244455555566666 3333255667888999999999999999999999999988732212 111
Q ss_pred HhhccCcHHHHHH---hhc--CCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHh-hcCCchhHHHHHHHHH
Q 012448 121 LLIDYEIYPLLLD---CLI--NGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLV-AQCSSLGRVRVLSLIV 194 (463)
Q Consensus 121 ~~~~~~l~~~li~---~l~--d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~-~~~~~~vR~Rv~el~v 194 (463)
.+ +....+. ... +.+-++--.....+..+++..|. -..+++. .+...+ .++++.++.=.++.+.
T Consensus 78 ~~----L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~--~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 78 PL----LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLP--LLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred HH----HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHH--HHHHHHhccccHHHHHHHHHHHH
Confidence 11 1111111 111 22222333334578888888775 2334555 666666 6889999999999999
Q ss_pred HHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHH-HHhcchHHHHHHHhcccccc
Q 012448 195 KLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEF-LSRTTLLQLLCSLIGNSATE 268 (463)
Q Consensus 195 ~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~-L~~~gi~~~L~~~i~~~~~d 268 (463)
.+. ..+..+.+ .....+...+....++.+.....+++.-+.. .-+..+| ..+..+++.+-+++...+.+
T Consensus 148 ~Lc--~~~vvd~~---s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 148 PLC--EAEVVDFY---SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HHH--HHhhccHH---HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence 998 33444444 3556666666554677777766666665555 2222222 24567777777777665543
No 231
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.95 E-value=2.1e+02 Score=32.78 Aligned_cols=159 Identities=13% Similarity=0.161 Sum_probs=99.3
Q ss_pred HHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc-------hhhchHHHHHHhhcCCCHHHHHHHHH
Q 012448 30 AAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS-------LIPHYMPFVQVGLTADSHSVKRLACK 102 (463)
Q Consensus 30 ~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-------l~~~~~~~l~~gL~h~~~~Vr~Lal~ 102 (463)
..+++.+-++-=|-||..|+-.| .+.+-.++.++=-.|.-.+|+. +.++-..++..-|+.|-|.||.-|..
T Consensus 165 qgVeeml~rL~~p~l~R~L~a~N--s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~ 242 (1005)
T KOG1949|consen 165 QGVEEMLYRLYKPILWRGLKARN--SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAIL 242 (1005)
T ss_pred hhHHHHHHHHHhHHHHHhhccCc--hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 34566666666788999999877 6677788888877777666653 55566788999999999999999999
Q ss_pred HHHHHHhCCchhHHHHHHHhhcc---CcHHHHHHhhcCC-chHHHHHHHHHHHHHhCCCCC---ccccccCCCcchhhHh
Q 012448 103 TVTCLLEDSDLEASCALQLLIDY---EIYPLLLDCLING-NEEVATASMDAIKKLAGFPNG---IDIIFPADNKAATDLG 175 (463)
Q Consensus 103 ~l~~i~~~~~~~~~~~~~~~~~~---~l~~~li~~l~d~-d~~va~~A~~~L~~lak~~~~---l~~l~~~~~~~~~~L~ 175 (463)
-+.++... .-+.+..+ +++.-|++-+.-+ -.+|.-...+-|..|+-.|.. ++.+.+ -|.
T Consensus 243 gv~k~~s~-------fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lp-------al~ 308 (1005)
T KOG1949|consen 243 GVCKITSK-------FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLP-------ALR 308 (1005)
T ss_pred HHHHHHHH-------HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHH-------hcc
Confidence 99987532 11122111 2333444433321 222333334445555544431 132222 233
Q ss_pred hHhhcCCchhHHHHHHHHHHHHhcCHHHH
Q 012448 176 NLVAQCSSLGRVRVLSLIVKLFSVSRSVA 204 (463)
Q Consensus 176 ~~~~~~~~~vR~Rv~el~v~ia~~S~~~~ 204 (463)
..+..+++.||.-.|+++..|-.|-.-.+
T Consensus 309 ~~l~D~se~VRvA~vd~ll~ik~vra~~f 337 (1005)
T KOG1949|consen 309 YSLHDNSEKVRVAFVDMLLKIKAVRAAKF 337 (1005)
T ss_pred hhhhccchhHHHHHHHHHHHHHhhhhhhh
Confidence 34557788899999999888876644333
No 232
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=42.44 E-value=1.5e+02 Score=25.50 Aligned_cols=85 Identities=11% Similarity=-0.024 Sum_probs=57.4
Q ss_pred hHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhc
Q 012448 173 DLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRT 252 (463)
Q Consensus 173 ~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~ 252 (463)
-|.+.+-..+..|...+.+++-+.+... +.++.++.-. .. =|.|... .--++..+-+++.|.+||.+.
T Consensus 12 lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~~~---p~-------l~~L~~~-g~~Ll~~~lS~~~Gf~~L~~~ 79 (115)
T PF14663_consen 12 LLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVSLR---PS-------LDHLGDI-GSPLLLRFLSTPSGFRYLNEI 79 (115)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHHcC---cH-------HHHHHHc-CHHHHHHHHcchHHHHHhcch
Confidence 3444566678888999999999988777 7777765321 11 2333333 345677888999999999998
Q ss_pred chHHHHHHHhcccccch
Q 012448 253 TLLQLLCSLIGNSATET 269 (463)
Q Consensus 253 gi~~~L~~~i~~~~~dp 269 (463)
|.+++-.+.=....+.-
T Consensus 80 ~~v~~El~~W~~~~N~~ 96 (115)
T PF14663_consen 80 GYVEKELDKWFESFNKE 96 (115)
T ss_pred hHHHHHHHHHHHcccHH
Confidence 88887766544433333
No 233
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=41.81 E-value=20 Score=25.30 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=24.4
Q ss_pred HhhccCcHHHHHHhhcCCchHHHHHHHHHH
Q 012448 121 LLIDYEIYPLLLDCLINGNEEVATASMDAI 150 (463)
Q Consensus 121 ~~~~~~l~~~li~~l~d~d~~va~~A~~~L 150 (463)
++..+.+...+..++.|++.+|...|++.|
T Consensus 13 ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 13 LLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred ccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 444557788888999999999999998764
No 234
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=41.57 E-value=65 Score=30.05 Aligned_cols=55 Identities=22% Similarity=0.307 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCC
Q 012448 56 GLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDS 111 (463)
Q Consensus 56 ~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~ 111 (463)
+.|+.+=.||..++++....--...+.+.+..||.. ++.||.++...+.+++...
T Consensus 42 elRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC
Confidence 356677679999988665554466789999999998 9999999999999998765
No 235
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=41.32 E-value=3.7e+02 Score=26.74 Aligned_cols=181 Identities=13% Similarity=0.112 Sum_probs=93.1
Q ss_pred HHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh--hHHHHHHHHhcchHH--------HHHHHhcccccchhhhhh
Q 012448 205 SVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE--IQHSAEFLSRTTLLQ--------LLCSLIGNSATETILRSR 274 (463)
Q Consensus 205 ~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~--t~~g~~~L~~~gi~~--------~L~~~i~~~~~dpl~r~~ 274 (463)
|+..--.++.+++..++- +|.-++-.-.+...+.-+ .-.|.+.|+=.|... ++.+.+..-.+||+++
T Consensus 23 EF~~aL~lL~~~l~k~dl-~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig-- 99 (262)
T PF14225_consen 23 EFLEALSLLNKLLDKLDL-DDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIG-- 99 (262)
T ss_pred HHHHHHHHHHHHHhhcCC-chHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccC--
Confidence 333334688999999887 777655555555555533 556777776666532 1122222223333321
Q ss_pred hhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCC----hhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHH
Q 012448 275 AIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQD----SDECESALEALGQIGSSIQGATLLLLCLPPAARHV 350 (463)
Q Consensus 275 aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d----~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~ 350 (463)
+..+-+-+. .....|-+++.+ ++++ ......+++.|+.++. ....+.+.++
T Consensus 100 ---------~~~~rll~~---~la~LP~ll~~~----d~~~~i~~~~~~~~~A~~La~~a~---------~~~~~~La~i 154 (262)
T PF14225_consen 100 ---------DSQSRLLFL---LLALLPRLLHAF----DDPNPIQPDQECIEIAEALAQVAE---------AQGLPNLARI 154 (262)
T ss_pred ---------CCCccHHHH---HHHHHHHHHHHh----cccccccccHHHHHHHHHHHHHHH---------hCCCccHHHH
Confidence 100000000 233477777743 3443 1333455577777772 1113455556
Q ss_pred HHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHH
Q 012448 351 IDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYR 429 (463)
Q Consensus 351 l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~ 429 (463)
+..|....-+. . ++-+ . ...+-+.+.|+.....+-..+++++. ++-+.+|...++
T Consensus 155 l~~ya~~~fr~------------------~-~dfl----~-~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~ 210 (262)
T PF14225_consen 155 LSSYAKGRFRD------------------K-DDFL----S-QVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQ 210 (262)
T ss_pred HHHHHhcCCCC------------------H-HHHH----H-HHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 65555442211 1 0001 0 12222225554433345566778888 888899999999
Q ss_pred HHHHhhcC
Q 012448 430 MITGLVAR 437 (463)
Q Consensus 430 ~l~~l~~~ 437 (463)
+|..+..+
T Consensus 211 iL~~ll~~ 218 (262)
T PF14225_consen 211 ILKVLLPH 218 (262)
T ss_pred HHHHHhcc
Confidence 99988877
No 236
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=40.28 E-value=33 Score=31.30 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhcCchhHHHhhhccchhHh
Q 012448 422 EIRLAGYRMITGLVARPWCLMELCSKQEIINT 453 (463)
Q Consensus 422 elr~A~~~~l~~l~~~~Wg~~~i~~~~gfie~ 453 (463)
++|.+|+++|.+++..|.|...+.++|-.+-.
T Consensus 109 ~lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~R 140 (149)
T PF12331_consen 109 TLRLEALRTLTSFAFSPFGALQLASHPTAIPR 140 (149)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHhCchhHHH
Confidence 68999999999999999999999998865543
No 237
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.76 E-value=2.9e+02 Score=33.13 Aligned_cols=154 Identities=17% Similarity=0.056 Sum_probs=94.5
Q ss_pred cchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCC----CHHHHHHHHHHHHHHHhCCchhHHHHHHH-hhccCcHH
Q 012448 55 PGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTAD----SHSVKRLACKTVTCLLEDSDLEASCALQL-LIDYEIYP 129 (463)
Q Consensus 55 ~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~----~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~-~~~~~l~~ 129 (463)
++++..+++||.-+-...+-+.-.-=-.+++--||+|- .|..|+=+|-.+|++.++- + .++. -...+...
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~---~--~Arw~G~r~~Ahe 645 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDY---D--EARWSGRRDNAHE 645 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhc---c--hhhhccccccHHH
Confidence 48888999999998766443321110134444566553 5778999999999999877 3 3343 34556667
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHhCCC-----CCccc---ccc--------CCCcch--hhHhhHhhcCCchhHHHHHH
Q 012448 130 LLLDCLINGNEEVATASMDAIKKLAGFP-----NGIDI---IFP--------ADNKAA--TDLGNLVAQCSSLGRVRVLS 191 (463)
Q Consensus 130 ~li~~l~d~d~~va~~A~~~L~~lak~~-----~~l~~---l~~--------~~~~~~--~~L~~~~~~~~~~vR~Rv~e 191 (463)
-++..|.|+-.+|..+|+=+|.-+-... ..... .++ .+.+.. ..+...+...++.+|--|-.
T Consensus 646 kL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v 725 (1387)
T KOG1517|consen 646 KLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVV 725 (1387)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHH
Confidence 7778899999999999999999887641 11111 111 000000 12223455667777777666
Q ss_pred HHHHHHhcCHHHHHHHHhhccH
Q 012448 192 LIVKLFSVSRSVASVIFKANLL 213 (463)
Q Consensus 192 l~v~ia~~S~~~~~~v~~sgl~ 213 (463)
.+.+...--...+..++-+...
T Consensus 726 ~ls~~~~g~~~~~~~va~n~~~ 747 (1387)
T KOG1517|consen 726 ALSHFVVGYVSHLKVVAGNYLL 747 (1387)
T ss_pred HHHHHHHhhHHHhHHHhhhhcc
Confidence 6666665555555555443333
No 238
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=39.38 E-value=83 Score=27.14 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=47.1
Q ss_pred hhchHHHHHHhhcCCC----HHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHH
Q 012448 78 IPHYMPFVQVGLTADS----HSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAI 150 (463)
Q Consensus 78 ~~~~~~~l~~gL~h~~----~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L 150 (463)
.+.+.+.+...|.... +.+...+++.++..+... -...+.+.+++..+...+++++. ...|++.|
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~------~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWI------PIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-------HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC------CHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 3445667777777665 788999999999988855 23455567799999999988886 55566544
No 239
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.68 E-value=1.5e+02 Score=33.83 Aligned_cols=126 Identities=15% Similarity=0.142 Sum_probs=88.9
Q ss_pred HHHccccCCCCcchHHHHHHHHHHHhc--cccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 012448 44 ILNTLQTKPDVPGLEDTLVVCLERIFK--TKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQL 121 (463)
Q Consensus 44 L~~~L~~~~~~~~~~~~~~~vL~~il~--~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~ 121 (463)
|+....+.+ ...+-.+|.+|.++++ +--++.++..+...+..-|..-.|.||.-|+.++.|.=+...++.-
T Consensus 90 lLRg~Eskd--k~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~----- 162 (892)
T KOG2025|consen 90 LLRGTESKD--KKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC----- 162 (892)
T ss_pred HHhcccCcc--hhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc-----
Confidence 334444433 5678889999999987 4444567778888888889999999999999999998644322211
Q ss_pred hhccCcHHHHHHhh-cCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHH
Q 012448 122 LIDYEIYPLLLDCL-INGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIV 194 (463)
Q Consensus 122 ~~~~~l~~~li~~l-~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v 194 (463)
.+..++...| .||..+|.+.|+..+. ++++.++ .+-...+.-+..+|+=||+-+.
T Consensus 163 ----~v~n~l~~liqnDpS~EVRRaaLsnI~------------vdnsTlp--~IveRarDV~~anRrlvY~r~l 218 (892)
T KOG2025|consen 163 ----PVVNLLKDLIQNDPSDEVRRAALSNIS------------VDNSTLP--CIVERARDVSGANRRLVYERCL 218 (892)
T ss_pred ----cHHHHHHHHHhcCCcHHHHHHHHHhhc------------cCcccch--hHHHHhhhhhHHHHHHHHHHhh
Confidence 2222222222 4889999998876653 5667777 6666777888889999998654
No 240
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=37.56 E-value=4.5e+02 Score=28.20 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=40.9
Q ss_pred CCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccc
Q 012448 222 KKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSA 266 (463)
Q Consensus 222 ~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~ 266 (463)
..+|.-+...|+-||..+.- ++...++.+..|...++++.+.+..
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~ 87 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYS 87 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHccc
Confidence 33899999999999999988 9999999999999999999999863
No 241
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.24 E-value=7.8e+02 Score=29.26 Aligned_cols=93 Identities=15% Similarity=0.077 Sum_probs=69.3
Q ss_pred HhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHH-HHHHhc--c
Q 012448 177 LVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSA-EFLSRT--T 253 (463)
Q Consensus 177 ~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~-~~L~~~--g 253 (463)
.+.++-.-+|-|+|.++.+.++..=. +-..-+.++....++|.+.++.=||+-|+--|.-+-....-+ .|+... +
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~--d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~ 547 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFK--DPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPP 547 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhH
Confidence 44456667899999999999854211 111123567777888884389999999999999888855555 667655 8
Q ss_pred hHHHHHHHhcccccchhh
Q 012448 254 LLQLLCSLIGNSATETIL 271 (463)
Q Consensus 254 i~~~L~~~i~~~~~dpl~ 271 (463)
++++|..++++-+.|+++
T Consensus 548 ~mq~lL~L~ne~End~Lt 565 (1010)
T KOG1991|consen 548 IMQELLKLSNEVENDDLT 565 (1010)
T ss_pred HHHHHHHHHHhcchhHHH
Confidence 999999999999999983
No 242
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=37.03 E-value=3.7e+02 Score=34.04 Aligned_cols=171 Identities=16% Similarity=0.192 Sum_probs=97.9
Q ss_pred ccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHH
Q 012448 124 DYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSV 203 (463)
Q Consensus 124 ~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~ 203 (463)
...++..+....+..+.+++..|+++|.+++..++... +.... . ... .|-|+..++- .+.+.
T Consensus 902 ~l~iv~~l~l~~~~~~p~ial~alkIL~~ls~s~~~~~----~~~~~--~-----~~~---~~n~ll~~l~----~~~es 963 (1691)
T PF11894_consen 902 NLNIVVHLGLYVGSDHPEIALLALKILSKLSSSPKFNS----ADSFS--S-----RRL---RRNRLLTILE----SSDES 963 (1691)
T ss_pred hHHHHHHhHhhcCCCCHHHHHHHHHHHHHHHcCCCCcc----ccccc--c-----ccc---chhHHHHHHh----cccHH
Confidence 33567777778889999999999999999998875321 11111 0 001 1445444333 36666
Q ss_pred HHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhc
Q 012448 204 ASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLL 283 (463)
Q Consensus 204 ~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~ 283 (463)
..... |+...+....+. .+.- +....+..+..|++.|.+.+.....-|-+ |=+..||=.
T Consensus 964 ~~I~~--~fv~~Le~~~~~-~~~~---------------~~~~~~~ik~~IL~lL~~~L~~~~~~Pni---AHlLLGF~~ 1022 (1691)
T PF11894_consen 964 ERIRF--GFVEQLEADIDE-FEEG---------------AESPSLSIKLAILDLLLENLSQPPPAPNI---AHLLLGFDV 1022 (1691)
T ss_pred HHHHH--HHHHHHcccccc-cccc---------------ccchhhHHHHHHHHHHHHHhCCCCCCCcH---HHHHhCCCc
Confidence 55543 788887777776 3322 44556667777777777777766555531 223344411
Q ss_pred cccccchh-------cc--hhhhhhhHHHHHHHhccccCC-----ChhhhhHHHHHHHhhcCCHH
Q 012448 284 SKDDSHMF-------ID--ESSAKTVISAIDGRLGFLQSQ-----DSDECESALEALGQIGSSIQ 334 (463)
Q Consensus 284 ~f~~~~~~-------~~--~~~~k~~p~~l~~~f~~~~~~-----d~~~~~~A~dtlG~Igss~e 334 (463)
- +++... ++ .+|.+....+++.-.+...+. -+.+.+.|++-|=.+++++.
T Consensus 1023 ~-~~~~~~~~~~~g~~~~~~S~lhsiL~lL~~~~~~~~~~~~~~~~~~L~e~~~~ll~~Lc~~p~ 1086 (1691)
T PF11894_consen 1023 R-GNVSSLSLQDPGFFGSPRSCLHSILDLLESSLDSDSNSDIDYWPPRLAELCYRLLYKLCSSPL 1086 (1691)
T ss_pred C-CchhhcccccccccCCcCcHHHHHHHHHHhccccccCcchhcccHHHHHHHHHHHHHHHcCCc
Confidence 1 122211 11 226665555554332222222 25678888888888888555
No 243
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=36.58 E-value=4e+02 Score=30.23 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=60.6
Q ss_pred CChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccch-h------hHhHHhhhHHHhcCCCchhhhhhh
Q 012448 314 QDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHG-K------QLAALHGLANIAGKTRSEDKIILN 386 (463)
Q Consensus 314 ~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~-~------k~r~L~al~~Il~~~r~~~~~il~ 386 (463)
.++.....++-+|.++=+.+-|.+.+..+ +...+......-+.. + ..-+|+ ++..+... +
T Consensus 600 ~~~an~ll~vR~L~N~f~~~~g~~~~~s~----~~~i~~~~~~~~s~~~knl~ia~atlaln-~sv~l~~~--------~ 666 (745)
T KOG0301|consen 600 ADPANQLLVVRCLANLFSNPAGRELFMSR----LESILDPVIEASSLSNKNLQIALATLALN-YSVLLIQD--------N 666 (745)
T ss_pred cchhHHHHHHHHHHHhccCHHHHHHHHHH----HHHHhhhhhhhhcccchhHHHHHHHHHHH-HHHHHHhc--------c
Confidence 56788888999999999999999999875 333333333322211 1 223344 44444422 1
Q ss_pred hhHHHHHHHHHHHHHhhCCCCChhHHHHHHhcCCHHHHHHHHHHHHHhhcCchhH
Q 012448 387 ADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAEIRLAGYRMITGLVARPWCL 441 (463)
Q Consensus 387 ~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~qpF~elr~A~~~~l~~l~~~~Wg~ 441 (463)
+| ++ ..+.. +..|..+..|-+|+- |.||+|.||.+--|+-
T Consensus 667 ~~-~~-~~~~l------------~~ai~~~~e~~~d~E-A~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 667 EQ-LE-GKEVL------------LSAISTLLEPVDDLE-AIYRLLVALGTLMTVD 706 (745)
T ss_pred cc-cc-hHHHH------------HHHHHhhcccchhHH-HHHHHHHHHHhhcccc
Confidence 11 11 11111 233444558888885 9999999999988863
No 244
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=36.12 E-value=1.2e+02 Score=31.81 Aligned_cols=75 Identities=12% Similarity=0.196 Sum_probs=54.2
Q ss_pred cCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHH----HHHHHHhCCCCCcccccc
Q 012448 90 TADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASM----DAIKKLAGFPNGIDIIFP 165 (463)
Q Consensus 90 ~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~----~~L~~lak~~~~l~~l~~ 165 (463)
+.+-+.|=.+++.-+...+-+. +. ....+.++|+.+.++..+...+.--...++ ++|..|+-+..|++.+.+
T Consensus 119 ~~FG~~v~s~a~~ivs~~I~ne---PT-~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~ 194 (379)
T PF06025_consen 119 EVFGPSVFSLAINIVSDFIHNE---PT-SFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKS 194 (379)
T ss_pred cccchHHHHHHHHHHHHHHhcC---Cc-hhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHh
Confidence 3567899999999999998887 77 888999999999999999844444444444 556666666655554433
Q ss_pred CCC
Q 012448 166 ADN 168 (463)
Q Consensus 166 ~~~ 168 (463)
.+.
T Consensus 195 ~~~ 197 (379)
T PF06025_consen 195 SNP 197 (379)
T ss_pred cCh
Confidence 333
No 245
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=34.94 E-value=1.2e+02 Score=32.07 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcc--
Q 012448 93 SHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKA-- 170 (463)
Q Consensus 93 ~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~-- 170 (463)
...-|+|+.+-|.|-.+|- .. ++....|+. ++|.-|.|.+|.+.|++-|-.+++. +.+.-+.| ++.
T Consensus 37 ~~k~k~lasq~ip~~fk~f---p~-la~~a~da~-----~d~~ed~d~~ir~qaik~lp~fc~~-d~~~rv~d--~l~qL 104 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHF---PS-LADEAIDAQ-----LDLCEDDDVGIRRQAIKGLPLFCKG-DALSRVND--VLVQL 104 (460)
T ss_pred chHHHHHHHHHHHHHHhhC---ch-hhhHHHHhh-----hccccccchhhHHHHHhccchhccC-chhhhhHH--HHHHH
Confidence 4456899999999999988 66 766655544 4899999999999999998888876 22221111 111
Q ss_pred --hhhHh---hHhhcCCchhHHHHHHH-HHHHHhcCHHHHHHHHhhccHHHHHhhcCC
Q 012448 171 --ATDLG---NLVAQCSSLGRVRVLSL-IVKLFSVSRSVASVIFKANLLTLLEEGVSK 222 (463)
Q Consensus 171 --~~~L~---~~~~~~~~~vR~Rv~el-~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~ 222 (463)
...|. ......|+.+|.|+.-. ..++--.-++.+..=+|.-+.+.+-.-|.+
T Consensus 105 Lnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~d 162 (460)
T KOG2213|consen 105 LNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALED 162 (460)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHh
Confidence 00111 12233599999999864 456777778887766666666554444443
No 246
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=33.90 E-value=2.7e+02 Score=31.60 Aligned_cols=155 Identities=15% Similarity=0.096 Sum_probs=96.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID 161 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~ 161 (463)
...|...|+.++..|.+=+-..+...+... .+ +-++..+++|-.... ...|+.+|..+- .|
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~---~~--------~~l~~~l~~y~~~t~---s~~~~~il~~~~-~P---- 66 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSD---RE--------PWLVNGLVDYYLSTN---SQRALEILVGVQ-EP---- 66 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhcc---ch--------HHHHHHHHHHHhhcC---cHHHHHHHHhcC-Cc----
Confidence 345666777777777776665555544332 11 123444454433332 344666666442 22
Q ss_pred ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 162 IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 162 ~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
-+..++. .|...+ .+..-|.+++.++..+....+-.+-.+.++.+|+.++.+|.-..|+.+-..|+-+|.-|-=
T Consensus 67 --~~K~~~~--~l~~~~--~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 67 --HDKHLFD--KLNDYF--VKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred --cHHHHHH--HHHHHH--cCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 1122333 444333 2457899999999999999999999999999999999998774677776666666655433
Q ss_pred --hHHHHHHHHhc-chHHHHHHH
Q 012448 242 --IQHSAEFLSRT-TLLQLLCSL 261 (463)
Q Consensus 242 --t~~g~~~L~~~-gi~~~L~~~ 261 (463)
...+-.||..- .|+.+|...
T Consensus 141 ~ip~~l~~~L~~Lf~If~Rl~~W 163 (668)
T PF04388_consen 141 HIPSSLGPHLPDLFNIFGRLLSW 163 (668)
T ss_pred cccchhhHHHHHHHHHHHHHHHc
Confidence 44555666633 556666544
No 247
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.82 E-value=1.5e+02 Score=35.21 Aligned_cols=196 Identities=15% Similarity=0.213 Sum_probs=116.6
Q ss_pred hHHHHHHhhhhccCCCCCChHHHHHHH--------hcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhch
Q 012448 10 SNQLLDSASDFAYHPGVQNDAAAKKFL--------DRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHY 81 (463)
Q Consensus 10 ~~~~~~~~~~~a~~p~~~s~~~~~~~~--------~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~ 81 (463)
+..|.+.|-.+-+| .+...+++= .+-++..|........ +..+.+..+++.+|+.. +...|
T Consensus 228 mt~Lv~va~~Ls~~----~~~tskQleaEr~k~r~~rarle~Ll~~r~etq---e~~d~i~~mi~~if~sV----FVHRY 296 (1048)
T KOG2011|consen 228 MTALVSVALNLSSH----NDKTSKQLEAERNKSRGNRARLESLLMLRKETQ---EQQDEIESMINDIFDSV----FVHRY 296 (1048)
T ss_pred HHHHHHHHHHHHHh----hHHHHHHHHHHhcccccchHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhe----eeeec
Confidence 45677778888777 666666632 1115666666665432 44555556666665432 22223
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC---C
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP---N 158 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~---~ 158 (463)
..-+|.+|.-|+.++|-.+.+ ..+.+.+-..+..+-=.|.|.+.+|-...+++|..+-.+. +
T Consensus 297 --------RDV~~~IRaiCiqeLgiWi~~-------yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~ 361 (1048)
T KOG2011|consen 297 --------RDVDPDIRAICIQELGIWIKS-------YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKD 361 (1048)
T ss_pred --------ccCchHHHHHHHHHHHHHHHh-------ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccch
Confidence 345788999999999987664 3457788889999999999999999999999999997773 2
Q ss_pred CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHH
Q 012448 159 GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYE 238 (463)
Q Consensus 159 ~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~e 238 (463)
+++..++ ..-. .+.... ..+..+-+|+-.+..-+...++..++- +. +-.++..+.+ .+.=++..+.+.++.
T Consensus 362 ~L~lFts-RFK~--RIVeMa-drd~~~~Vrav~L~~~~~~~~~g~L~d---~d-i~~Vy~Li~d-~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 362 KLELFTS-RFKD--RIVEMA-DRDRNVSVRAVGLVLCLLLSSSGLLSD---KD-ILIVYSLIYD-SNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHHH-HHHH--HHHHHH-hhhcchhHHHHHHHHHHHHhcccccCh---hH-HHHHHHHHhc-cCcchHHHHHHHHHH
Confidence 2232111 1111 111122 345555555555555555555433321 11 2233445555 555556666666654
Q ss_pred HH
Q 012448 239 LA 240 (463)
Q Consensus 239 La 240 (463)
-.
T Consensus 433 k~ 434 (1048)
T KOG2011|consen 433 KL 434 (1048)
T ss_pred Hh
Confidence 33
No 248
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=33.70 E-value=1.2e+02 Score=34.51 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=58.7
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHH-hCCC
Q 012448 81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKL-AGFP 157 (463)
Q Consensus 81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~l-ak~~ 157 (463)
+++.++.-|...+|-+|.=|+.-+.+|-+-+....+ ..+++..+++.|++|...-|.+.|++.++++ -+||
T Consensus 347 Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~------~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 347 LVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVG------RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccc------hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 478888899999999999999999999875521111 2357889999999999999999999999998 4555
No 249
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=33.61 E-value=2.2e+02 Score=28.14 Aligned_cols=116 Identities=13% Similarity=0.137 Sum_probs=81.3
Q ss_pred hcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcc--hhhHhhHhh--cCCchhHHHHHHHHHHHHh-cCHHHHHHHHh
Q 012448 135 LINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKA--ATDLGNLVA--QCSSLGRVRVLSLIVKLFS-VSRSVASVIFK 209 (463)
Q Consensus 135 l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~--~~~L~~~~~--~~~~~vR~Rv~el~v~ia~-~S~~~~~~v~~ 209 (463)
+.+++..=--.|.+.|.-++.||+--...+++..-- ...|. ... ++-+.+|.-.+-++..+-+ -|++.......
T Consensus 109 l~~~~snRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLn-tss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLlt 187 (315)
T COG5209 109 LDERESNRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLN-TSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLT 187 (315)
T ss_pred cCchhhhHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhh-ccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHh
Confidence 344444445568888999998885323344544411 11333 111 2345667777777666655 48899999999
Q ss_pred hccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhc
Q 012448 210 ANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRT 252 (463)
Q Consensus 210 sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~ 252 (463)
.+++|.++.-++. .-.+-|.-++-++..+--...|.+|+.++
T Consensus 188 TeivPLcLrIme~-gSElSktvaifI~qkil~dDvGLqYiCqT 229 (315)
T COG5209 188 TEIVPLCLRIMEL-GSELSKTVAIFIFQKILGDDVGLQYICQT 229 (315)
T ss_pred hhHHHHHHHHHHh-hhHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 9999999999988 88889999999998888888999998875
No 250
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.49 E-value=8.1e+02 Score=30.30 Aligned_cols=234 Identities=15% Similarity=0.120 Sum_probs=141.9
Q ss_pred hhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc---hhhchHHHHHHhhcCCC
Q 012448 17 ASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS---LIPHYMPFVQVGLTADS 93 (463)
Q Consensus 17 ~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~---l~~~~~~~l~~gL~h~~ 93 (463)
++.++..|+-++...+. =.-.+..++.-|.-.+ +..+..+-..|..+.++..... +.+.......+....++
T Consensus 22 ~~~~n~~~~~~~~~~~~---~dsel~~I~kkL~KkD--~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~ 96 (1312)
T KOG0803|consen 22 SASINSASSNPDPFVLE---LDSELDIIVKKLLKRD--ETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDED 96 (1312)
T ss_pred cccccccccCCChHHhc---cCHHHHHHHHHHhccC--hHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCcc
Confidence 34444444444443333 2234556667776655 4455555567777777776653 35666888899999999
Q ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC--CccccccCCCc--
Q 012448 94 HSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN--GIDIIFPADNK-- 169 (463)
Q Consensus 94 ~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~--~l~~l~~~~~~-- 169 (463)
..||.++-.-+...+..-. .. ++.-+. .+++...-...|.+..|+++|.+.+++...... .+-.++++...
T Consensus 97 ~~VR~~t~~v~s~l~t~lk--k~-lsp~LK--~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~ 171 (1312)
T KOG0803|consen 97 RTVRLLTHDVFSKLLTKLK--KK-LSPFLK--SLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYL 171 (1312)
T ss_pred HHHHHHHHHHHHHHHHHHH--HH-hhHHHH--hhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHH
Confidence 9999999888888765331 11 344443 378888889999999999999998887643221 11111111111
Q ss_pred -------------ch--------------------------------------------------hhHhhHhhcCCchhH
Q 012448 170 -------------AA--------------------------------------------------TDLGNLVAQCSSLGR 186 (463)
Q Consensus 170 -------------~~--------------------------------------------------~~L~~~~~~~~~~vR 186 (463)
++ ..+-+.+.++++.+|
T Consensus 172 ~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~ 251 (1312)
T KOG0803|consen 172 VTEILVKETPDSLSDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIK 251 (1312)
T ss_pred HHHHHhccCccccchhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchh
Confidence 10 000133456777888
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHhhccH-HHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHH---HHhcchHHHHHHH
Q 012448 187 VRVLSLIVKLFSVSRSVASVIFKANLL-TLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEF---LSRTTLLQLLCSL 261 (463)
Q Consensus 187 ~Rv~el~v~ia~~S~~~~~~v~~sgl~-~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~---L~~~gi~~~L~~~ 261 (463)
...|+++-.+..-=+...- ..+...+ +..+.-+++ .| .+.-...|.+.-+-+ -+.-.-+ .++.|+..++.+.
T Consensus 252 ~~~~ell~~l~~~i~~~~~-~~~~~~l~~~~~~~~~~-~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ 328 (1312)
T KOG0803|consen 252 VALLELLLSLIDDILNRVM-ESEKNYLKPVLLGSIDS-LD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNL 328 (1312)
T ss_pred HHHHHHHHHHHhhhHHhcc-hhhhhHhhHHHHccccc-cc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHH
Confidence 8888888777754333311 1233444 444455666 77 677777776663333 3333322 2578999999999
Q ss_pred hc
Q 012448 262 IG 263 (463)
Q Consensus 262 i~ 263 (463)
+.
T Consensus 329 ir 330 (1312)
T KOG0803|consen 329 IR 330 (1312)
T ss_pred Hh
Confidence 98
No 251
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=33.21 E-value=6.7e+02 Score=27.34 Aligned_cols=161 Identities=16% Similarity=0.159 Sum_probs=97.7
Q ss_pred HHHhccccccchh-hchHHHHHHhhcCC-CHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC-CchHH
Q 012448 66 ERIFKTKYGASLI-PHYMPFVQVGLTAD-SHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN-GNEEV 142 (463)
Q Consensus 66 ~~il~~~~~~~l~-~~~~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d-~d~~v 142 (463)
...+..+.|..+. ..+...+..++... ...=|.-|+.+|..+...++. . +-+-.- ..|+..++.-++| .+...
T Consensus 271 ~~~~~~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sf--s-vWeq~f-~~iL~~l~EvL~d~~~~~~ 346 (516)
T KOG2956|consen 271 DDSMDQLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSF--S-VWEQHF-AEILLLLLEVLSDSEDEII 346 (516)
T ss_pred CcchhhCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccch--h-HHHHHH-HHHHHHHHHHHccchhhHH
Confidence 3333444444332 23444444455444 556677788888887765422 2 222111 2577788889999 89999
Q ss_pred HHHHHHHHHHHhCCCCCccccccCCCcc-hhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcC
Q 012448 143 ATASMDAIKKLAGFPNGIDIIFPADNKA-ATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVS 221 (463)
Q Consensus 143 a~~A~~~L~~lak~~~~l~~l~~~~~~~-~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~ 221 (463)
++.|..+|.+++++.| ..+||..-.. -+.|.......+.++|.=.=+|..-+++|.|.. |+. .+-+.++.
T Consensus 347 k~laLrvL~~ml~~Q~--~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---~I~-~i~~~Ilt--- 417 (516)
T KOG2956|consen 347 KKLALRVLREMLTNQP--ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---CIV-NISPLILT--- 417 (516)
T ss_pred HHHHHHHHHHHHHhch--HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---HHH-HHhhHHhc---
Confidence 9999999999999986 3455533222 012232334567788888888999999999854 221 34444443
Q ss_pred CCCcHHHHHhHHHHHHHHHh
Q 012448 222 KKNDTLETLSILELLYELAE 241 (463)
Q Consensus 222 ~~~DvLv~lnalell~eLa~ 241 (463)
.|-=--+-++.|++.|.+
T Consensus 418 --~D~~~~~~~iKm~Tkl~e 435 (516)
T KOG2956|consen 418 --ADEPRAVAVIKMLTKLFE 435 (516)
T ss_pred --CcchHHHHHHHHHHHHHh
Confidence 333334556677787776
No 252
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=33.20 E-value=5.7e+02 Score=26.47 Aligned_cols=240 Identities=14% Similarity=0.164 Sum_probs=141.7
Q ss_pred HHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448 117 CALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL 196 (463)
Q Consensus 117 ~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i 196 (463)
++++.+-++|++..+|.++.+.+.+..+.+..+..++-+..-| . . ...|..
T Consensus 70 qLtqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvg--------t------------r---------~~tv~Y 120 (342)
T KOG1566|consen 70 QLTQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVG--------T------------R---------SPTVEY 120 (342)
T ss_pred HHHHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcC--------C------------c---------chHHHH
Confidence 3778888999999999999999999999999888877655421 1 0 022333
Q ss_pred HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhh
Q 012448 197 FSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAI 276 (463)
Q Consensus 197 a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ai 276 (463)
....++.+...+ ....++.|+ -++|=.|++|-...++.++|+..+.-+.+-..+++-+.-|--
T Consensus 121 l~t~~e~~~~lv---------~~~~~~~~i--aL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~Fdia------ 183 (342)
T KOG1566|consen 121 LETNPEILDNLV---------KGYENTPEI--ALTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNFDIA------ 183 (342)
T ss_pred HHhCHHHHHHHH---------hhhccchHH--HHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccchHHH------
Confidence 344455544443 333223565 567888999999999999998887777776666654332111
Q ss_pred hHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHh
Q 012448 277 MISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFD 356 (463)
Q Consensus 277 li~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~ 356 (463)
+.-+. .|-+ ++ .. .-+.-++.|.++...-+..+-...+.
T Consensus 184 --sdA~~------------------tfK~-ll---t~-----------------Hk~~vaEfl~~n~d~ff~e~~~~Ll~ 222 (342)
T KOG1566|consen 184 --SDAFS------------------TFKE-LL---TR-----------------HKSVVAEFLIRNYDNFFAEVYEKLLR 222 (342)
T ss_pred --HHHHH------------------HHHH-HH---HH-----------------hHHHHHHHHHhChhhhHHHHHHHHhc
Confidence 00000 0000 00 00 01112233333311112222233332
Q ss_pred hccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhh
Q 012448 357 RQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLV 435 (463)
Q Consensus 357 ~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~ 435 (463)
.-.-..|--++..++.++-- | + +.+ .+++-+ . +...+.++|++. .|+..++.-|+++++.-+
T Consensus 223 s~Nyvtkrqs~kllg~llld-r-~------N~~--~M~kYi-----s--s~enLKlmM~llrdkskniQ~eAFhvFKvfv 285 (342)
T KOG1566|consen 223 SENYVTKRQSLKLLGELLLD-R-S------NSA--VMTKYI-----S--SPENLKLMMNLLRDKSKNIQLEAFHVFKVFV 285 (342)
T ss_pred ccceehHHHHHHhHHHHHhC-C-C------cHH--HHHHHh-----c--CHHHHHHHHHHhhCccccchHHHHHHHHHHh
Confidence 22223366677788887652 2 2 112 133333 1 123456799999 999999999999999999
Q ss_pred cCchhHH---Hh--hhccchhHhhcCCCcc
Q 012448 436 ARPWCLM---EL--CSKQEIINTVTDASTE 460 (463)
Q Consensus 436 ~~~Wg~~---~i--~~~~gfie~lldr~~E 460 (463)
+-|---+ .+ .|.|.+++|+-+=+++
T Consensus 286 AnpnK~q~V~~IL~~Nr~KLl~~l~~f~~d 315 (342)
T KOG1566|consen 286 ANPNKPQPVRDILVRNRPKLLELLHDFHTD 315 (342)
T ss_pred cCCCCCchHHHHHHhCcHHHHHHHHHhCCC
Confidence 8866533 33 3888999998765554
No 253
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=32.67 E-value=5e+02 Score=25.72 Aligned_cols=234 Identities=12% Similarity=0.103 Sum_probs=111.0
Q ss_pred hHhhHhhcCCchhHHHHHHHHHHHHhcCH-HHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHh
Q 012448 173 DLGNLVAQCSSLGRVRVLSLIVKLFSVSR-SVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSR 251 (463)
Q Consensus 173 ~L~~~~~~~~~~vR~Rv~el~v~ia~~S~-~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~ 251 (463)
.|.+-+.+.|+.+|-|..+++..+...-+ +.++.-.-.-++.-..+.|+| ... -..++.-+..|.+-+. ..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~--~~~~l~gl~~L~~~~~-----~~ 74 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HAC--VQPALKGLLALVKMKN-----FS 74 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-Hhh--HHHHHHHHHHHHhCcC-----CC
Confidence 56667778999999999999998766543 333332222355666667755 332 3333666666665211 11
Q ss_pred cchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchh-cchh---hhhhhHHHHHHHhccc-cCCChhhhhHHHHHH
Q 012448 252 TTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMF-IDES---SAKTVISAIDGRLGFL-QSQDSDECESALEAL 326 (463)
Q Consensus 252 ~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~-~~~~---~~k~~p~~l~~~f~~~-~~~d~~~~~~A~dtl 326 (463)
.+...++++.+.. ..++ ++..-..++..| +++.. ++.. +..--+.|+..+.+.+ .+.||..+..+++-+
T Consensus 75 ~~~~~~i~~~l~~-~~~~----q~~~q~~R~~~~-~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~ 148 (262)
T PF14500_consen 75 PESAVKILRSLFQ-NVDV----QSLPQSTRYAVY-QLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLL 148 (262)
T ss_pred hhhHHHHHHHHHH-hCCh----hhhhHHHHHHHH-HHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 1223333333332 1111 111112233322 21111 1000 0000123333333222 578999999999999
Q ss_pred HhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCC-CchhhhhhhhhHHHHHHHHHHHHHhhCC
Q 012448 327 GQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKT-RSEDKIILNADAEESLRHLIYEVASRSS 405 (463)
Q Consensus 327 G~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~-r~~~~~il~~~~e~~l~~~~ye~~~~~~ 405 (463)
-.|.+..+ + ++-.+.+.+.++-+ |=+. ++|-|.-..-..|+ |+.-.-.+...+.
T Consensus 149 ~~i~~~~~----~----~~~~e~lFd~~~cY----------------FPI~F~pp~~dp~~IT~ed-Lk~~L~~cl~s~~ 203 (262)
T PF14500_consen 149 KVILQEFD----I----SEFAEDLFDVFSCY----------------FPITFRPPPNDPYGITRED-LKRALRNCLSSTP 203 (262)
T ss_pred HHHHHhcc----c----chhHHHHHHHhhhe----------------eeeeeeCCCCCCCCCCHHH-HHHHHHHHhcCcH
Confidence 87777444 1 11222222222211 1111 11111100112444 5544413222211
Q ss_pred C--CChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhhh
Q 012448 406 K--LTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELCS 446 (463)
Q Consensus 406 ~--~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~~ 446 (463)
. .-...+++.-+ .+.+..|.-++..|.+-+. .||...+..
T Consensus 204 ~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~-~y~~~~~~~ 246 (262)
T PF14500_consen 204 LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIE-NYGADSLSP 246 (262)
T ss_pred hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH-HCCHHHHHH
Confidence 1 11223455544 8899999999999998554 667665543
No 254
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=32.44 E-value=87 Score=28.63 Aligned_cols=78 Identities=12% Similarity=0.229 Sum_probs=55.6
Q ss_pred HHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccc--cchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 012448 31 AAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG--ASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLL 108 (463)
Q Consensus 31 ~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~--~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~ 108 (463)
..+++....-+..|..-|++..-.. ....+...+-.+|++... ....+++.+.+...++..++..|+..+++++.++
T Consensus 78 ~~ee~y~~vvi~~L~~iL~D~sLs~-~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 78 SSEEYYPTVVINALMRILRDPSLSS-HHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4556667777788888887754222 233445555555554444 3577889999999999999999999999999876
Q ss_pred h
Q 012448 109 E 109 (463)
Q Consensus 109 ~ 109 (463)
.
T Consensus 157 ~ 157 (160)
T PF11865_consen 157 S 157 (160)
T ss_pred H
Confidence 4
No 255
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=32.29 E-value=3.5e+02 Score=23.79 Aligned_cols=86 Identities=15% Similarity=-0.001 Sum_probs=52.3
Q ss_pred HHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhc
Q 012448 45 LNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLID 124 (463)
Q Consensus 45 ~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~ 124 (463)
+.-..+++++|.-.-...++-+..+. .......+.++|..-|++.++.||.=+|+-|.++.++. .+...+.+..
T Consensus 6 l~~ATsdd~~p~pgy~~~Eia~~t~~---s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G---~~~f~~~~~~ 79 (122)
T cd03572 6 LSKATSDDDEPTPGYLYEEIAKLTRK---SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG---NSDFKRELQR 79 (122)
T ss_pred HHHHhcCCCCCCchHHHHHHHHHHHc---CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC---CHHHHHHHHH
Confidence 33344444444333333333344322 33345578999999999999999999999999999877 3225555544
Q ss_pred c-CcHHHHHHhhc
Q 012448 125 Y-EIYPLLLDCLI 136 (463)
Q Consensus 125 ~-~l~~~li~~l~ 136 (463)
+ .++..+...-+
T Consensus 80 ~~~~Ik~~~~f~g 92 (122)
T cd03572 80 NSAQIRECANYKG 92 (122)
T ss_pred hHHHHHHHHHcCC
Confidence 3 34444444444
No 256
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.34 E-value=2.5e+02 Score=32.15 Aligned_cols=171 Identities=18% Similarity=0.212 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhccccccc-h--------hhchHHHHHHhhcCCCHHHHHHHHHHHHHHH--hCCchhHHHHHHHhhccCc
Q 012448 59 DTLVVCLERIFKTKYGAS-L--------IPHYMPFVQVGLTADSHSVKRLACKTVTCLL--EDSDLEASCALQLLIDYEI 127 (463)
Q Consensus 59 ~~~~~vL~~il~~~~~~~-l--------~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~--~~~~~~~~~~~~~~~~~~l 127 (463)
...|.-++++++..+.+. + ..=|.+-|-+||+.+|..||.-|+--+-..- +..+.... --..+.+. =
T Consensus 144 sp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e-~mD~i~~k-Q 221 (1005)
T KOG1949|consen 144 SPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAE-EMDSIIQK-Q 221 (1005)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHH-HHHHHHHH-H
Confidence 445555666655444432 2 2234788899999999999998877666543 22211011 22223332 2
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHH-hCCCCCccccccCCCcchhhHh-----hHhhcCCchhHHHHHHHHHHHHhcCH
Q 012448 128 YPLLLDCLINGNEEVATASMDAIKKL-AGFPNGIDIIFPADNKAATDLG-----NLVAQCSSLGRVRVLSLIVKLFSVSR 201 (463)
Q Consensus 128 ~~~li~~l~d~d~~va~~A~~~L~~l-ak~~~~l~~l~~~~~~~~~~L~-----~~~~~~~~~vR~Rv~el~v~ia~~S~ 201 (463)
+..+...|.|+=..|...|+.-+.++ +++.. +.+++.+- +|. ...-...+.||+-|++.+-.++-.-.
T Consensus 222 f~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe----~iP~~i~~--~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~ 295 (1005)
T KOG1949|consen 222 FEELYSLLEDPYPMVRSTAILGVCKITSKFWE----MIPPTILI--DLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL 295 (1005)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH----HcCHHHHH--HHHHHHHHHhhhccchheehhHhcCcHHHHcCcc
Confidence 45667889999999999998876655 55553 33333332 221 12234567899999999999986533
Q ss_pred HHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 202 SVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 202 ~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
.+ .... -++|.+=.-|-| +-.=||+.+.++|..+-.
T Consensus 296 sh-~~le--~~Lpal~~~l~D-~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 296 SH-PLLE--QLLPALRYSLHD-NSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred ch-hHHH--HHHHhcchhhhc-cchhHHHHHHHHHHHHHh
Confidence 22 1111 134444344556 677889999999877644
No 257
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.35 E-value=4.8e+02 Score=32.54 Aligned_cols=144 Identities=15% Similarity=0.148 Sum_probs=87.2
Q ss_pred chHHHHHHHHHHHhcc-c-cccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHH
Q 012448 56 GLEDTLVVCLERIFKT-K-YGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLD 133 (463)
Q Consensus 56 ~~~~~~~~vL~~il~~-~-~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~ 133 (463)
...+....+=..+... + -.++.+..+.+.|..+|+.-.=+||+.+|-++..+++....+ . ..+.+. +++..+..
T Consensus 1013 ~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~-~-~~e~lp--elw~~~fR 1088 (1702)
T KOG0915|consen 1013 KVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFD-Q-VKEKLP--ELWEAAFR 1088 (1702)
T ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChH-H-HHHHHH--HHHHHHHH
Confidence 3444445555555321 1 112345556899999999999999999999999999866442 2 444444 57777776
Q ss_pred hhcCCchHHHHHHHHHHHHHhCCC-------CCcc--ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHH
Q 012448 134 CLINGNEEVATASMDAIKKLAGFP-------NGID--IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVA 204 (463)
Q Consensus 134 ~l~d~d~~va~~A~~~L~~lak~~-------~~l~--~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~ 204 (463)
-.-|-..+|..+|-++.+-++|-- +|.. .+.+ ..++ --|.+.++++=..||.=-..+++.++|+|...+
T Consensus 1089 vmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~iLP-fLl~~gims~v~evr~~si~tl~dl~Kssg~~l 1166 (1702)
T KOG0915|consen 1089 VMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD-IILP-FLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKEL 1166 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HHHH-HHhccCcccchHHHHHHHHHHHHHHHHhchhhh
Confidence 666666666665554444433321 1110 0000 0111 012234456667788888999999999998754
Q ss_pred H
Q 012448 205 S 205 (463)
Q Consensus 205 ~ 205 (463)
.
T Consensus 1167 k 1167 (1702)
T KOG0915|consen 1167 K 1167 (1702)
T ss_pred c
Confidence 4
No 258
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=30.17 E-value=1.2e+02 Score=27.28 Aligned_cols=71 Identities=13% Similarity=0.053 Sum_probs=48.9
Q ss_pred CcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC-Cc-cccccCCCcchhhHhhHhh------cCCchhHHHHHHHHHHHH
Q 012448 126 EIYPLLLDCLINGNEEVATASMDAIKKLAGFPN-GI-DIIFPADNKAATDLGNLVA------QCSSLGRVRVLSLIVKLF 197 (463)
Q Consensus 126 ~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~-~l-~~l~~~~~~~~~~L~~~~~------~~~~~vR~Rv~el~v~ia 197 (463)
+.+..|...|+.++..++.-|+..|..+.++-- .. ..|-..+++. .|.+++. +.+..||-|+++++-..+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~--el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN--ELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH--HHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456667778888888888888888887766432 22 2333445555 6666664 257899999999998887
Q ss_pred h
Q 012448 198 S 198 (463)
Q Consensus 198 ~ 198 (463)
.
T Consensus 116 ~ 116 (139)
T cd03567 116 L 116 (139)
T ss_pred H
Confidence 3
No 259
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.16 E-value=1.3e+02 Score=29.51 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=48.1
Q ss_pred hHHHHHccccCCCCcchHH----HHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCC
Q 012448 41 LSVILNTLQTKPDVPGLED----TLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDS 111 (463)
Q Consensus 41 l~~L~~~L~~~~~~~~~~~----~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~ 111 (463)
||.+|+.|.+.+ ..|+= -+.+.|-+- -.....+.||+...|.++|.+.|..|...+++.+.+++...
T Consensus 116 Lp~F~dGL~e~~--hpyrf~A~~Gi~DLLl~~--g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~ 186 (262)
T KOG3961|consen 116 LPLFFDGLAETD--HPYRFVARQGITDLLLAG--GEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSV 186 (262)
T ss_pred HHHHhhhhhhcC--CCcchhhhhcHHHHHHhc--ccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc
Confidence 677888887754 22332 233333332 22334578899999999999999999999999999987755
No 260
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=28.56 E-value=1.8e+02 Score=27.23 Aligned_cols=91 Identities=15% Similarity=0.280 Sum_probs=60.1
Q ss_pred CcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcccc-ccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH-hcCHHH
Q 012448 126 EIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDII-FPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF-SVSRSV 203 (463)
Q Consensus 126 ~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l-~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia-~~S~~~ 203 (463)
++=|++|.||.++++ +....+.|.++-.+-.. +++ .+.+.-. .|.+-+.+.+..--.|+..++..+. ..-.|.
T Consensus 3 eikplLIsCL~~q~~--k~s~~KiL~~iVs~Va~-~v~~~~~~~W~--eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~ef 77 (174)
T PF04510_consen 3 EIKPLLISCLTMQET--KESDFKILRRIVSHVAY-EVFDLQEGGWD--ELSDCILSLSENEPVKAFHIFICLPMPLYGEF 77 (174)
T ss_pred chHHHHHHHHHhhcc--cHhHHHHHHHHHHHHHH-HHHhcCCCCch--hHHHHHHHhhccchHHHHHHHHhCCchhhhhH
Confidence 566899999999885 35555666665433210 222 2444444 5665555555555688888888887 666666
Q ss_pred HHHHHhhccHHHHHhhcCC
Q 012448 204 ASVIFKANLLTLLEEGVSK 222 (463)
Q Consensus 204 ~~~v~~sgl~~~ll~eL~~ 222 (463)
.....+ .+++.+.+.|.+
T Consensus 78 l~~~~~-~L~~~~~~~L~~ 95 (174)
T PF04510_consen 78 LIPFME-NLLPEISKVLLP 95 (174)
T ss_pred HHHHHH-HHHHHHHHHcCC
Confidence 666665 488999999988
No 261
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=28.09 E-value=9e+02 Score=27.18 Aligned_cols=63 Identities=13% Similarity=-0.005 Sum_probs=42.6
Q ss_pred HHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCC
Q 012448 149 AIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSK 222 (463)
Q Consensus 149 ~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~ 222 (463)
+++......| +++. +.++ .|...+.+++.+-+.=+.-+.+-|...+.+.++.| +|.+..-+.+
T Consensus 185 vlS~Vye~~P--~~i~--PhlP--~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~c-----iP~L~g~l~d 247 (851)
T KOG3723|consen 185 VLSAVYEKQP--QPIN--PHLP--ELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKC-----IPFLIGHLKD 247 (851)
T ss_pred HHHHHHhcCC--CccC--cccH--HHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHH-----HHHHHHHhcc
Confidence 4555554444 2222 2344 56668888998888888888888888999999876 4666666666
No 262
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=27.87 E-value=2.1e+02 Score=28.87 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=47.5
Q ss_pred hccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHH
Q 012448 69 FKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMD 148 (463)
Q Consensus 69 l~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~ 148 (463)
|+++......++....|...-+| |=||..|+.++|.|++. . + +..|-.-++|++.=|+....-
T Consensus 211 fGQl~s~~ai~~L~k~L~d~~E~--pMVRhEaAeALGaIa~e-----~-~---------~~vL~e~~~D~~~vv~esc~v 273 (289)
T KOG0567|consen 211 FGQLQSPAAIPSLIKVLLDETEH--PMVRHEAAEALGAIADE-----D-C---------VEVLKEYLGDEERVVRESCEV 273 (289)
T ss_pred HhhccchhhhHHHHHHHHhhhcc--hHHHHHHHHHHHhhcCH-----H-H---------HHHHHHHcCCcHHHHHHHHHH
Confidence 33445555556666666665555 56999999999998542 2 2 444556788999888888888
Q ss_pred HHHHHh
Q 012448 149 AIKKLA 154 (463)
Q Consensus 149 ~L~~la 154 (463)
+|...-
T Consensus 274 aldm~e 279 (289)
T KOG0567|consen 274 ALDMLE 279 (289)
T ss_pred HHHHHH
Confidence 887653
No 263
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=27.79 E-value=1.8e+02 Score=24.92 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=53.3
Q ss_pred HHHHhc--chHHHHHHHhcccc--cchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHH
Q 012448 247 EFLSRT--TLLQLLCSLIGNSA--TETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESA 322 (463)
Q Consensus 247 ~~L~~~--gi~~~L~~~i~~~~--~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A 322 (463)
+||.+. |++..+.+.+.+.+ .+-..+.+++...|++.--.+ .......|+...++-..++ .++.+..|
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g------~~i~~a~pQI~acL~saL~--~~eL~~~a 74 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMG------KHISSALPQIMACLQSALE--IPELRSLA 74 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhC--chhHHHHH
Confidence 456655 89999999998877 333467788888777664111 1123345555554422233 45699999
Q ss_pred HHHHHhhcCCHHHHH
Q 012448 323 LEALGQIGSSIQGAT 337 (463)
Q Consensus 323 ~dtlG~Igss~eGk~ 337 (463)
+.+|..+-.+.+...
T Consensus 75 l~~W~~~i~~L~~~~ 89 (107)
T smart00802 75 LRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHhCCHHH
Confidence 999998888666533
No 264
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=27.72 E-value=7.9e+02 Score=28.67 Aligned_cols=154 Identities=13% Similarity=0.099 Sum_probs=88.8
Q ss_pred HHHHHHHHHhCCchhHHHHHHHhhccCcHHHHH----HhhcCCc----hHHHHHHHHHHHHHhCCCCC-----ccccccC
Q 012448 100 ACKTVTCLLEDSDLEASCALQLLIDYEIYPLLL----DCLINGN----EEVATASMDAIKKLAGFPNG-----IDIIFPA 166 (463)
Q Consensus 100 al~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li----~~l~d~d----~~va~~A~~~L~~lak~~~~-----l~~l~~~ 166 (463)
.++-+.++++-. . -.+.+.+-+.++.++ .|++++. ..++..-..++..+...... -+.....
T Consensus 142 llkLL~~c~Kv~----~-NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~ 216 (802)
T PF13764_consen 142 LLKLLRYCCKVK----V-NRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSL 216 (802)
T ss_pred HHHHHHHHHhhH----H-HHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccc
Confidence 455555555533 2 223333355554444 6778877 77888887777766433221 0100011
Q ss_pred C-----CcchhhHh---hHhh----cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHh--hcCC--CCcHHHHH
Q 012448 167 D-----NKAATDLG---NLVA----QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEE--GVSK--KNDTLETL 230 (463)
Q Consensus 167 ~-----~~~~~~L~---~~~~----~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~--eL~~--~~DvLv~l 230 (463)
. ..+ .+. +.+. +.+..+.--+..++-.++--+++..++++ +.|...++ .+++ ++|.-+.
T Consensus 217 ~~~~~~~~~--~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv--~~F~p~l~f~~~D~~~~~~~~~~- 291 (802)
T PF13764_consen 217 SGSEEQDKE--QVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV--EHFKPYLDFDKFDEEHSPDEQFK- 291 (802)
T ss_pred cccccccHH--HHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH--HHHHHhcChhhcccccCchHHHH-
Confidence 1 111 121 1222 33566666667777778888999999998 46665442 1221 1233333
Q ss_pred hHHHHHHHHHh-h------HHHHHHHHhcchHHHHHHHhccc
Q 012448 231 SILELLYELAE-I------QHSAEFLSRTTLLQLLCSLIGNS 265 (463)
Q Consensus 231 nalell~eLa~-t------~~g~~~L~~~gi~~~L~~~i~~~ 265 (463)
+|++.++++ . ....+++.+.|+++..+++|...
T Consensus 292 --Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~ 331 (802)
T PF13764_consen 292 --LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH 331 (802)
T ss_pred --HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Confidence 777788877 3 35568999999999999999863
No 265
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=27.43 E-value=2.6e+02 Score=23.92 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=34.4
Q ss_pred cchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 012448 55 PGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLE 109 (463)
Q Consensus 55 ~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~ 109 (463)
+..+.+++.++..+.....|.. -+.+.+.+..-+.. ++.-.++.+.-+..+.+
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~-Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~e 54 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQ-WPDFLEDLLQLLQS-SPQHLELVLRILRILPE 54 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHHT-THHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhh-CchHHHHHHHHhcc-chhHHHHHHHHHHHHHH
Confidence 3567888888888866555443 34466666666665 47777777776666543
No 266
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=27.00 E-value=1.7e+02 Score=32.49 Aligned_cols=167 Identities=16% Similarity=0.061 Sum_probs=98.1
Q ss_pred HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHH-hCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448 118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKL-AGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL 196 (463)
Q Consensus 118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~l-ak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i 196 (463)
+.-.+.++.+..++++.|.+||+-+...+...+-+. -+.++--+-....+.++ .|.+.++++|+-+|-.-.=.+-++
T Consensus 423 LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iId--vl~~~v~sKDdaLqans~wvlrHl 500 (743)
T COG5369 423 LRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIID--VLVNLVMSKDDALQANSEWVLRHL 500 (743)
T ss_pred HHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHH--HHHHHhhcchhhhhhcchhhhhhh
Confidence 444678889999999999999998888776665443 33443113344556666 677788888776552211111111
Q ss_pred --HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHH---HHHHH----hcchHHHHHHHhcccc
Q 012448 197 --FSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHS---AEFLS----RTTLLQLLCSLIGNSA 266 (463)
Q Consensus 197 --a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g---~~~L~----~~gi~~~L~~~i~~~~ 266 (463)
.....+-++....-| .++++.-..| +|-=||-.++++++.+.- +.-+ -.+.. +.-.+..|.+....
T Consensus 501 myncq~~ekf~~Lakig-~~kvl~~~ND-pc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~-- 576 (743)
T COG5369 501 MYNCQKNEKFKFLAKIG-VEKVLSYTND-PCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEE-- 576 (743)
T ss_pred hhcCcchhhhhhHHhcC-HHHHHHHhcC-cccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHh--
Confidence 112344455554433 3566666777 899999999999999865 3221 11211 22345555555543
Q ss_pred cchhhhhhhhhHhhhhccccccch
Q 012448 267 TETILRSRAIMISGRLLSKDDSHM 290 (463)
Q Consensus 267 ~dpl~r~~aili~g~i~~f~~~~~ 290 (463)
.+|+.-.+++.+.-.+++..+..+
T Consensus 577 ~np~~i~~~~yilv~~aa~d~~l~ 600 (743)
T COG5369 577 NNPMEILEGCYILVRNAACDDTLD 600 (743)
T ss_pred cCchhhhhhHHHHHHHHhccchHH
Confidence 667654455555555555444443
No 267
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=26.78 E-value=79 Score=28.88 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh---hHHHHHHHHhcchHHHHHHHhcccc
Q 012448 190 LSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE---IQHSAEFLSRTTLLQLLCSLIGNSA 266 (463)
Q Consensus 190 ~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~---t~~g~~~L~~~gi~~~L~~~i~~~~ 266 (463)
.|+++-==++.++.++...|..++..+++-++...-.-+++-.++.+.=|-+ +++..-||...+.+-.|+..--+-+
T Consensus 5 aE~~iwGDq~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~ 84 (149)
T PF09758_consen 5 AEILIWGDQNDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFS 84 (149)
T ss_pred hhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCC
Confidence 3444444467888999999999999999988874455566666666666655 8888999999999999988877666
Q ss_pred cchhhhhhhhhHhhhhccccccc---------hh-cchhhhhhhHHHHHHHhccccCCChhhhhHHHHH
Q 012448 267 TETILRSRAIMISGRLLSKDDSH---------MF-IDESSAKTVISAIDGRLGFLQSQDSDECESALEA 325 (463)
Q Consensus 267 ~dpl~r~~aili~g~i~~f~~~~---------~~-~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dt 325 (463)
.+-+ .++|.+|-+.+ .| .++ -...+|-+.+. ..++..+|..++ +|+-|
T Consensus 85 ~ee~--------l~yYIsfLK~lSlkln~~tv~fffn~-~~~~FPL~~~a-ikf~~h~d~Mvr-~avR~ 142 (149)
T PF09758_consen 85 DEEV--------LSYYISFLKTLSLKLNKDTVQFFFNE-RNDSFPLYTEA-IKFYNHPDSMVR-TAVRT 142 (149)
T ss_pred cchh--------HHHHHHHHHHHHhhcCCCceeEeEec-CCCCCCcHHHH-HHhhcCcchHHH-HHHHH
Confidence 5554 45555543322 11 221 11236665553 345566655555 44433
No 268
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=26.53 E-value=99 Score=28.83 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=54.2
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448 79 PHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN 158 (463)
Q Consensus 79 ~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~ 158 (463)
+.+.+.+...++++++-+|++++-.+.+...+. .. ..++..+-.++.|++--|-+...-+|..+++..+
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~---~~--------~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRKE---DF--------DELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGC---HH--------HHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc---CH--------HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 557889999999999999999988877766654 21 1355666678999999999999999999998865
No 269
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.45 E-value=9.4e+02 Score=29.65 Aligned_cols=249 Identities=11% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHccccCCCCcchHHHHHHHHHHHhcccccc--chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 012448 44 ILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA--SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQL 121 (463)
Q Consensus 44 L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~--~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~ 121 (463)
+|+-++... +.-..+.-.++..++.-.... ++..=+..-|+.+=....+.-+.|+-.-+-+++.+- ..
T Consensus 149 f~d~~~~~~--~~~v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~---~~----- 218 (1266)
T KOG1525|consen 149 FFDLARKGH--PKKVFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNL---ED----- 218 (1266)
T ss_pred HHHHHhccc--cHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhh---ch-----
Q ss_pred hhccCcHHHHHHhhcCCc---hHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448 122 LIDYEIYPLLLDCLINGN---EEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS 198 (463)
Q Consensus 122 ~~~~~l~~~li~~l~d~d---~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~ 198 (463)
.+-..+..|+.... +++...--+.+.++-+..|++=. ++++ +|..-++..+..+|.-+..++..+.+
T Consensus 219 ----~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~----~vip--~l~~eL~se~~~~Rl~a~~lvg~~~~ 288 (1266)
T KOG1525|consen 219 ----TIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLL----AVIP--QLEFELLSEQEEVRLKAVKLVGRMFS 288 (1266)
T ss_pred ----hHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHH----HHHH--HHHHHHhcchHHHHHHHHHHHHHHHh
Q ss_pred cCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhh
Q 012448 199 VSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIM 277 (463)
Q Consensus 199 ~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ail 277 (463)
.-..-+. =....++...++.+.| -++=||+-|++...+.-. .+++++=+...--+.-. ..||-+|-|..+
T Consensus 289 ~~~~~l~-~~~~~~~~~fl~r~~D-~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~-------~~D~~~rir~~v 359 (1266)
T KOG1525|consen 289 DKDSQLS-ETYDDLWSAFLGRFND-ISVEVRMECVESIKQCLLNNPSIAKASTILLALRER-------DLDEDVRVRTQV 359 (1266)
T ss_pred cchhhhc-ccchHHHHHHHHHhcc-CChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhh-------cCChhhhheeeE
Q ss_pred HhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhh
Q 012448 278 ISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQI 329 (463)
Q Consensus 278 i~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~I 329 (463)
+.+..-...--+.++ .+ ++..+-+...+.-..++.-||.+|.++
T Consensus 360 ~i~~~~v~~~~l~~~-------~~-ll~~~~eR~rDKk~~VR~~Am~~Laql 403 (1266)
T KOG1525|consen 360 VIVACDVMKFKLVYI-------PL-LLKLVAERLRDKKIKVRKQAMNGLAQL 403 (1266)
T ss_pred EEEEeehhHhhhhhh-------HH-HHHHHHHHHhhhhHHHHHHHHHHHHHH
No 270
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.52 E-value=9e+02 Score=26.33 Aligned_cols=135 Identities=19% Similarity=0.208 Sum_probs=98.8
Q ss_pred HHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhc-----C----HHHHHHHHhhccHHHH
Q 012448 146 SMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSV-----S----RSVASVIFKANLLTLL 216 (463)
Q Consensus 146 A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~-----S----~~~~~~v~~sgl~~~l 216 (463)
.+.-+.-+|..|.-...++.-+.++ .|-.++.+.|.-|-+-|.+++-++--. | +.+.++.++.+++..+
T Consensus 104 ~IQ~mhvlAt~PdLYp~lveln~V~--slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 104 IIQEMHVLATMPDLYPILVELNAVQ--SLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHhhhcChHHHHHHHHhccHH--HHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 3444555666665445777778877 676699999999999999999887654 2 3578889999999999
Q ss_pred HhhcCCCCcHH------HHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhccc-ccchhhhhhhhhHhhhhcc
Q 012448 217 EEGVSKKNDTL------ETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNS-ATETILRSRAIMISGRLLS 284 (463)
Q Consensus 217 l~eL~~~~DvL------v~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~-~~dpl~r~~aili~g~i~~ 284 (463)
++.++- =|.- ---|.+.++..+++ -+.-.+-.+++|.+.-|...+.+. ..|+- .-+++=|+.+++.
T Consensus 182 vqnveR-LdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aN-k~YasEiLaillq 255 (536)
T KOG2734|consen 182 VQNVER-LDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDAN-KQYASEILAILLQ 255 (536)
T ss_pred HHHHHH-hhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchh-HHHHHHHHHHHhc
Confidence 988654 3333 34678888888888 888888888889999988876654 45553 3355555566655
No 271
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=25.50 E-value=1.4e+02 Score=30.49 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=43.3
Q ss_pred HHHHHccccCCCCcchHHHHHHHHHHHhccccccch---hhchHHHHHHhhcCC--CHHHHHHHHHHHHHHHhCC
Q 012448 42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASL---IPHYMPFVQVGLTAD--SHSVKRLACKTVTCLLEDS 111 (463)
Q Consensus 42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l---~~~~~~~l~~gL~h~--~~~Vr~Lal~~l~~i~~~~ 111 (463)
+.+|.-|.+.+ -..-++..|++++...+.... ...+...+...+.|+ .+.||+.|+..+.++....
T Consensus 167 ~kvyskl~~~~----d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~ 237 (339)
T PF12074_consen 167 EKVYSKLASEE----DLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASN 237 (339)
T ss_pred HHHHhccCCHh----HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence 45555543322 133344466666544433221 245788899999999 9999999999999988766
No 272
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=25.39 E-value=4.1e+02 Score=22.31 Aligned_cols=75 Identities=9% Similarity=0.006 Sum_probs=52.4
Q ss_pred chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHH----hh--cCCchHHHHHHHHH
Q 012448 76 SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLD----CL--INGNEEVATASMDA 149 (463)
Q Consensus 76 ~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~----~l--~d~d~~va~~A~~~ 149 (463)
.-.+.....|..-|.|+++.|+-.++.-+-++++|.+. . ..+.+.......-++. .. .+.+..|...+...
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~--~-f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l 109 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGE--R-FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIEL 109 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH--H-HHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHH
Confidence 44556788999999999999999999999999999842 2 4455555444333322 11 24467788887777
Q ss_pred HHHH
Q 012448 150 IKKL 153 (463)
Q Consensus 150 L~~l 153 (463)
+...
T Consensus 110 ~~~w 113 (115)
T cd00197 110 VQLW 113 (115)
T ss_pred HHHH
Confidence 6654
No 273
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.29 E-value=1.6e+03 Score=29.06 Aligned_cols=107 Identities=22% Similarity=0.193 Sum_probs=58.4
Q ss_pred cHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHH--hcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccc
Q 012448 212 LLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLS--RTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSH 289 (463)
Q Consensus 212 l~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~--~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~ 289 (463)
-+..+.+.+.+ .+++.+--+.|-+..|+.-..-..|+. -+..++++ . +..||..|+--++..|- ++
T Consensus 877 ~~~l~~~sl~~-~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdkl----a-s~~d~i~R~ghslalg~------lh 944 (2067)
T KOG1822|consen 877 ALTLIVNSLIN-PNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKL----A-SARDPITRTGHSLALGC------LH 944 (2067)
T ss_pred HHHHHhhhhcc-CChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH----H-hcCCcHHHHHHHHHHHH------HH
Confidence 35566666777 788887777777777776333333332 22334444 2 34788877444444443 33
Q ss_pred hhcchh-----hhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCH
Q 012448 290 MFIDES-----SAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSI 333 (463)
Q Consensus 290 ~~~~~~-----~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~ 333 (463)
+++.+. ...+|-.++. + +-+++++..+..++-++..|.-+.
T Consensus 945 kyvgs~~s~qhl~t~v~illa-l--~~Ds~~p~VqtwSL~al~~i~~s~ 990 (2067)
T KOG1822|consen 945 KYVGSIGSGQHLNTSVSILLA-L--ATDSTSPVVQTWSLHALALILDSS 990 (2067)
T ss_pred HhccCCCCchhcccHHHHHHH-H--hhcCCCchhhhhHHHHHHHHHcCC
Confidence 332211 2222333332 1 235566688888888887776543
No 274
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=25.28 E-value=1.2e+02 Score=28.29 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=58.4
Q ss_pred cCCCCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHH
Q 012448 4 ELSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMP 83 (463)
Q Consensus 4 ~~~~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~ 83 (463)
+.+.+|-+.||.---.+.++|.. ||.++.|.+-.+ +.....+...|. ...+.... ...+
T Consensus 18 ~L~~eek~llW~~R~~~~~~p~a--------------L~~~l~sv~w~~--~~~v~e~~~lL~----~W~~i~~~-~aLe 76 (171)
T cd00872 18 ELTEEDKELLWKLRHECRKKPQA--------------LPKLLLSVKWNK--RDDVAQMYQLLK----RWPKLKPE-QALE 76 (171)
T ss_pred CCCHHHHHHHHHHHHHHhhCcHH--------------HHHHHhhCCCCC--HHHHHHHHHHHH----CCCCCCHH-HHHH
Confidence 35667777777776666666433 778888887766 333333333433 33332221 2334
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCC
Q 012448 84 FVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLING 138 (463)
Q Consensus 84 ~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~ 138 (463)
.|-. .-+++.||+.|++.+.+.-+ +. +. ..++++|++|.-+
T Consensus 77 LL~~--~f~d~~VR~yAV~~L~~~sd-----~e-L~------~yL~QLVQaLKyE 117 (171)
T cd00872 77 LLDC--NFPDEHVREFAVRCLEKLSD-----DE-LL------QYLLQLVQVLKYE 117 (171)
T ss_pred HCCC--cCCCHHHHHHHHHHHHhCCH-----HH-HH------HHHHHHHHHHHcc
Confidence 4333 33479999999988887321 22 32 3567777777765
No 275
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=24.58 E-value=1e+02 Score=19.27 Aligned_cols=13 Identities=54% Similarity=0.710 Sum_probs=10.5
Q ss_pred hhHHHHHHHhhcC
Q 012448 319 CESALEALGQIGS 331 (463)
Q Consensus 319 ~~~A~dtlG~Igs 331 (463)
+..|+++||+||.
T Consensus 2 R~~Aa~aLg~igd 14 (27)
T PF03130_consen 2 RRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHGGG-S
T ss_pred HHHHHHHHHHcCC
Confidence 5679999999998
No 276
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=24.23 E-value=1.4e+02 Score=26.27 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 189 VLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 189 v~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
.|+=++++...|+..+. .+.+.|...|++ ++.-|++-||.+|.-++.
T Consensus 21 ~~~Eia~~t~~s~~~~~-----ei~d~L~kRL~~-~~~hVK~K~Lrilk~l~~ 67 (122)
T cd03572 21 LYEEIAKLTRKSVGSCQ-----ELLEYLLKRLKR-SSPHVKLKVLKIIKHLCE 67 (122)
T ss_pred HHHHHHHHHHcCHHHHH-----HHHHHHHHHhcC-CCCcchHHHHHHHHHHHh
Confidence 34445555555655444 477899999999 999999999999999888
No 277
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=24.11 E-value=1.7e+02 Score=30.73 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=47.9
Q ss_pred HHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHH
Q 012448 31 AAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTV 104 (463)
Q Consensus 31 ~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l 104 (463)
.+.+|..++.+|.|- ...+..|-.+-.++..+...=+. -+.+...++.+.+..+|.+++..|+.-|+.+|
T Consensus 301 ~v~~Ff~~~v~peL~---~~~~~~piLka~aik~~~~Fr~~-l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQ---PDVNSHPILKADAIKFLYTFRNQ-LPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHTCHHHH----SS-S-HHHHHHHHHHHHHHGGG-S-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc---ccCCCCcchHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 479999999999997 22333355655555555544333 34566667999999999999999999998764
No 278
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=23.73 E-value=2.4e+02 Score=24.07 Aligned_cols=75 Identities=13% Similarity=0.247 Sum_probs=49.2
Q ss_pred hhhchHHHHHHhhc-CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhC
Q 012448 77 LIPHYMPFVQVGLT-ADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAG 155 (463)
Q Consensus 77 l~~~~~~~l~~gL~-h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak 155 (463)
..+.+.+++..||. ...+..|..+.--++.+..+.. +...+.+ .++..++........ .+.++-+|..+.+
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-----L~~~~l~-~l~~~i~~~~~~~~~--~~~~l~~L~~l~q 74 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-----LSDEVLN-ALMESILKNWTQETV--QRQALICLIVLCQ 74 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-----CcHHHHH-HHHHHHHhccccchh--HHHHHHHHHHHHH
Confidence 45678999999999 8899999998888888776652 2222222 233333333333332 4788888888886
Q ss_pred CCCC
Q 012448 156 FPNG 159 (463)
Q Consensus 156 ~~~~ 159 (463)
+..+
T Consensus 75 ~q~~ 78 (121)
T PF12397_consen 75 SQEN 78 (121)
T ss_pred cccc
Confidence 6633
No 279
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=23.60 E-value=2.5e+02 Score=25.67 Aligned_cols=85 Identities=13% Similarity=0.122 Sum_probs=72.1
Q ss_pred cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHH
Q 012448 180 QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLC 259 (463)
Q Consensus 180 ~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~ 259 (463)
.+|...|-||..=+++-| -.|..-++..+...++.++.+|.. .|.++.--.+-=|..++--+..+++|..++++..++
T Consensus 28 tt~~eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e-~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii 105 (173)
T KOG4646|consen 28 TTNIEAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEE-QNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLII 105 (173)
T ss_pred hccHHHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhc-ccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEE
Confidence 578888999877777765 567778888899999999999999 999999999998999999999999999999998887
Q ss_pred HHhcccc
Q 012448 260 SLIGNSA 266 (463)
Q Consensus 260 ~~i~~~~ 266 (463)
..+.+..
T Consensus 106 ~~lssp~ 112 (173)
T KOG4646|consen 106 FVLSSPP 112 (173)
T ss_pred eecCCCh
Confidence 6665433
No 280
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=23.49 E-value=1.2e+03 Score=27.13 Aligned_cols=116 Identities=9% Similarity=0.040 Sum_probs=77.6
Q ss_pred HHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 012448 30 AAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLE 109 (463)
Q Consensus 30 ~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~ 109 (463)
+-++.+.+.+..+.+...++++. -+.+..+|+.+.++-.......++-+.-+....||+..+-.|+.-|+-++...+.
T Consensus 451 sp~an~me~fiv~hv~P~f~s~y--gfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~ 528 (970)
T COG5656 451 SPAANVMEYFIVNHVIPAFRSNY--GFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIF 528 (970)
T ss_pred chHHHHHHHHHHHHhhHhhcCcc--cchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHh
Confidence 34666777777788877888765 6788999999999844444445566678889999999999999999999999888
Q ss_pred CCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHH
Q 012448 110 DSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAI 150 (463)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L 150 (463)
|....+. ..+.++ +.+.-++..=.+-|+.+-...+..+
T Consensus 529 ~~q~h~k-~sahVp--~tmekLLsLSn~feiD~LS~vMe~f 566 (970)
T COG5656 529 NEQSHEK-FSAHVP--ETMEKLLSLSNTFEIDPLSMVMESF 566 (970)
T ss_pred chhhhHH-HHhhhh--HHHHHHHHhcccccchHHHHHHHHH
Confidence 7633233 333322 3444444444444555544444443
No 281
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=22.97 E-value=3.7e+02 Score=24.44 Aligned_cols=68 Identities=16% Similarity=0.069 Sum_probs=52.5
Q ss_pred hHhhHhhcCCchhHHHHHHHHHHHHhcC-HHHH-HHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhh
Q 012448 173 DLGNLVAQCSSLGRVRVLSLIVKLFSVS-RSVA-SVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEI 242 (463)
Q Consensus 173 ~L~~~~~~~~~~vR~Rv~el~v~ia~~S-~~~~-~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t 242 (463)
.+.+++.++++..|.-.+.++..+...+ .|.+ +.+. ..+..++.-|...++.-+...++..+..+-..
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~--~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGS--QWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3444667778888999999999999887 7887 5443 68899999999867777788888877776653
No 282
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=22.95 E-value=7e+02 Score=24.14 Aligned_cols=124 Identities=16% Similarity=0.179 Sum_probs=69.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccC--cHHHHHHhhcCC---chHHHHHHHHHHHHHhCCCC
Q 012448 84 FVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYE--IYPLLLDCLING---NEEVATASMDAIKKLAGFPN 158 (463)
Q Consensus 84 ~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~--l~~~li~~l~d~---d~~va~~A~~~L~~lak~~~ 158 (463)
.+..+.....+..+-++++.+..+..|. .. ...++...+ ++..+..+.... +-.+...++..+-+++-..-
T Consensus 114 ~~~~~~~~~~~~~~ml~lR~l~NlF~~~---~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~ 189 (268)
T PF08324_consen 114 LISSGSSSSPPANQMLALRLLANLFSHP---PG-RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLH 189 (268)
T ss_dssp HHHCCTTTSSHHHHHHHHHHHHHHTTSC---CC-HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCcHHHHHHHHHHHHHhhCCC---cc-HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHH
Confidence 3344444568899999999999999887 33 333333333 344444444443 66676767777766642210
Q ss_pred CccccccCCCcc--hhhHhhHh--hcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccH
Q 012448 159 GIDIIFPADNKA--ATDLGNLV--AQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLL 213 (463)
Q Consensus 159 ~l~~l~~~~~~~--~~~L~~~~--~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~ 213 (463)
.-. . +.+... -..+.+.+ ...|+.+.+|.+-.+..+...+.+..+.+..-|+-
T Consensus 190 ~~~-~-~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~ 246 (268)
T PF08324_consen 190 KNR-S-DEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVK 246 (268)
T ss_dssp HCT-S--CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHH
T ss_pred hcC-C-ChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChH
Confidence 000 0 111111 00222111 12689999999999999998887776666543333
No 283
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=22.87 E-value=4.4e+02 Score=30.10 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=56.4
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHH---HHHH-HhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhC
Q 012448 80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS---CALQ-LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAG 155 (463)
Q Consensus 80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~---~~~~-~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak 155 (463)
+=.+.++.-++.|++.+...++.++...++.+..+.. .-.+ +-...+.+.-+...+.+++ +++-..++|+-||-
T Consensus 48 ~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~~~n--~Kk~laDIlSvLam 125 (878)
T KOG2005|consen 48 GDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMADSN--LKKWLADILSVLAM 125 (878)
T ss_pred hhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhccCch--hHhHHHHHHHHHhe
Confidence 3478889999999999999999999999987642211 0112 2234466677777777776 89999999999985
Q ss_pred CC
Q 012448 156 FP 157 (463)
Q Consensus 156 ~~ 157 (463)
..
T Consensus 126 t~ 127 (878)
T KOG2005|consen 126 TM 127 (878)
T ss_pred ee
Confidence 54
No 284
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=22.84 E-value=1.1e+02 Score=31.16 Aligned_cols=81 Identities=10% Similarity=0.121 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcccc--ccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCch-hHHHHHHHhhcc---CcHHHHH
Q 012448 59 DTLVVCLERIFKTKY--GASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDL-EASCALQLLIDY---EIYPLLL 132 (463)
Q Consensus 59 ~~~~~vL~~il~~~~--~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~-~~~~~~~~~~~~---~l~~~li 132 (463)
+.+..+.+.||++.. |......+.+.+.-|++|++..|-+.+++.+..++.+-.+ ... ..+..-+. .++..+.
T Consensus 142 ~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~-~~~~F~~~y~~~il~~if 220 (319)
T PF08767_consen 142 KLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPE-FANQFYQQYYLDILQDIF 220 (319)
T ss_dssp HHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHH
Confidence 344446666655542 3455666899999999999999999999999999976533 122 44433332 3555556
Q ss_pred HhhcCCch
Q 012448 133 DCLINGNE 140 (463)
Q Consensus 133 ~~l~d~d~ 140 (463)
..+-|++.
T Consensus 221 ~vltD~~H 228 (319)
T PF08767_consen 221 SVLTDSDH 228 (319)
T ss_dssp HHHHSTT-
T ss_pred HHHHCccc
Confidence 66667663
No 285
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.62 E-value=9.1e+02 Score=25.38 Aligned_cols=180 Identities=15% Similarity=0.080 Sum_probs=116.5
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHH--------
Q 012448 81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKK-------- 152 (463)
Q Consensus 81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~-------- 152 (463)
-...+..+++.|++.=|.+++..+++......-+.. -.+ ....+....+.|+...+.+.++.+|+.
T Consensus 8 ~~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~-----d~~-~~~~l~~~Ll~d~s~~vrr~lA~aL~~~~~~Pr~l 81 (364)
T COG5330 8 TDQDLIRLLEEASSGERALAARVLAFASLQRPLSRE-----DMR-QFEDLARPLLDDSSEEVRRELAAALAQCETAPRAL 81 (364)
T ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHH-----HHH-HHHHHHHHHhhCccHHHHHHHHHHHHhCCcCCHHH
Confidence 356788999999999999999999998765521111 111 244555567889999999999999875
Q ss_pred ---HhCCCCCc--cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHH
Q 012448 153 ---LAGFPNGI--DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTL 227 (463)
Q Consensus 153 ---lak~~~~l--~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvL 227 (463)
++..++.+ .+|.-.+++.+++|..++. .......| .|+.-.+.|+-....+++-|=-+.+.--+.+-.+++
T Consensus 82 ~~~La~d~~~IAapll~rSpal~d~dLv~i~~-~~G~~h~r---aIarR~~ls~~v~~~Lv~~g~~~~~~~~~~n~~A~~ 157 (364)
T COG5330 82 ARALAEDPISIAAPLLIRSPALTDDDLVDIAR-RQGPAHAR---AIARRPSLSPLVIDALVERGDEEEVLVLLENDAAPL 157 (364)
T ss_pred HHHHhcCChhHhHHHHHcCcCCChHHHHHHHH-hcCHHHHH---HHHhccCCChHHHHHHHHcCCchhhhcccccccCcc
Confidence 44444433 3444566666777874443 44444555 677777788877777777666666555555535566
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHhcch-----HHHHHHHhcccccchh
Q 012448 228 ETLSILELLYELAEIQHSAEFLSRTTL-----LQLLCSLIGNSATETI 270 (463)
Q Consensus 228 v~lnalell~eLa~t~~g~~~L~~~gi-----~~~L~~~i~~~~~dpl 270 (463)
-....-......++.+.-.+.++..-. -.+++....+.-.|+.
T Consensus 158 ~~~al~~~~d~~a~~~~~~~~~~~r~~lp~~~~~~~~~~~~~~~~~~~ 205 (364)
T COG5330 158 SPYALQRVADRAAAEPALRQAAVDREALPLRARIELAARVGERLRDSI 205 (364)
T ss_pred CHHHHHHHhhhhccChhHHHhhhchhhcchhHHHHHHHHHHHHhhccc
Confidence 566666777777777777666664433 3444444444444443
No 286
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.12 E-value=1.1e+03 Score=26.10 Aligned_cols=180 Identities=15% Similarity=0.133 Sum_probs=128.3
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448 79 PHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN 158 (463)
Q Consensus 79 ~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~ 158 (463)
.++...|+.||...+..+-.++.+-+.++.--.++. ..+.+.+++.-++..++-.++.+-+..+..|-.++=..
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK-----~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~- 376 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENK-----IVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS- 376 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccch-----HHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc-
Confidence 346889999999999999999988888765433221 23456688888998888888889999999998887444
Q ss_pred Cc-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHH
Q 012448 159 GI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLY 237 (463)
Q Consensus 159 ~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~ 237 (463)
|+ ...+..+.++ +|..++ .|++-+-=+..++-.++ ...+.-....-+..++.+...+-...|.=|.+..+.+--
T Consensus 377 glr~KMv~~GllP--~l~~ll--~~d~~~~iA~~~lYh~S-~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ci 451 (791)
T KOG1222|consen 377 GLRPKMVNGGLLP--HLASLL--DSDTKHGIALNMLYHLS-CDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCI 451 (791)
T ss_pred cccHHHhhccchH--HHHHHh--CCcccchhhhhhhhhhc-cCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHH
Confidence 55 6788889999 888444 23333222333333333 445555555556777777766444367777777777778
Q ss_pred HHHhhHHHHHHHHhcchHHHHHHHhcccccchh
Q 012448 238 ELAEIQHSAEFLSRTTLLQLLCSLIGNSATETI 270 (463)
Q Consensus 238 eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl 270 (463)
.|+-..-.+|.+....+++.|.+.-... .||+
T Consensus 452 Nl~lnkRNaQlvceGqgL~~LM~ra~k~-~D~l 483 (791)
T KOG1222|consen 452 NLCLNKRNAQLVCEGQGLDLLMERAIKS-RDLL 483 (791)
T ss_pred HHHhccccceEEecCcchHHHHHHHhcc-cchH
Confidence 8999999999999999999998876553 5665
No 287
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=21.88 E-value=64 Score=20.30 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=15.1
Q ss_pred cCcHHHHHHhhcCCchHHHH
Q 012448 125 YEIYPLLLDCLINGNEEVAT 144 (463)
Q Consensus 125 ~~l~~~li~~l~d~d~~va~ 144 (463)
..++|.+.+.|+++|+.++-
T Consensus 2 ~~IVpyi~~~L~N~~LAl~l 21 (24)
T PF09268_consen 2 ENIVPYILNTLQNPDLALRL 21 (24)
T ss_dssp TTHHHHHHHTT--HHHHHHH
T ss_pred ccchhHHHhccCCHHHHHHH
Confidence 46899999999999987764
No 288
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=21.67 E-value=5.5e+02 Score=26.88 Aligned_cols=138 Identities=13% Similarity=0.174 Sum_probs=76.2
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhc------CCchHHHHHHHHHHHHHh
Q 012448 82 MPFVQVGLT-ADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLI------NGNEEVATASMDAIKKLA 154 (463)
Q Consensus 82 ~~~l~~gL~-h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~------d~d~~va~~A~~~L~~la 154 (463)
.+|+.+-++ +...+.|..|+.-+..+.++- ...+...+. ..+-..++ ..+-.-+-.|+..+..++
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~---~~~v~~i~~-----~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala 283 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKF---EKQVTSILM-----QYIQQLLQQYASNPSNNWRSKDGALYLIGALA 283 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHHH---HHHHHHHHH-----HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHHH---hHHHHHHHH-----HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHH
Confidence 677777776 345677777777777776653 221222221 11222222 233345566777777775
Q ss_pred CCCC----Ccc---------ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcC
Q 012448 155 GFPN----GID---------IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVS 221 (463)
Q Consensus 155 k~~~----~l~---------~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~ 221 (463)
.-.. |.. -.|...+.+ +|. --.+..+++|.|++..+..-.++=+. +.. .++++.+++.|.
T Consensus 284 ~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~p--eL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L~ 356 (370)
T PF08506_consen 284 SKGSTTKSGVTQTNELVDVVDFFSQHVLP--ELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHLQ 356 (370)
T ss_dssp BSS--BTTB-S-B-TTS-HHHHHHHHTCH--HHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHTT
T ss_pred hhhccccCCcccccccccHHHHHHHHhHH--Hhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHhC
Confidence 4331 321 122223333 444 22367889999999999888777543 222 379999999999
Q ss_pred CCCcHHHHHhHHHH
Q 012448 222 KKNDTLETLSILEL 235 (463)
Q Consensus 222 ~~~DvLv~lnalel 235 (463)
+ ++..|.-=|+..
T Consensus 357 ~-~~~vv~tyAA~~ 369 (370)
T PF08506_consen 357 S-SSYVVHTYAAIA 369 (370)
T ss_dssp S-S-HHHHHHHHHH
T ss_pred C-CCcchhhhhhhh
Confidence 9 888777655543
No 289
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=21.39 E-value=3.7e+02 Score=21.83 Aligned_cols=64 Identities=11% Similarity=0.186 Sum_probs=42.7
Q ss_pred hHHHHHHh-hcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccC---cHHHHHHhhcCCchHHHHHHHHHHHH
Q 012448 81 YMPFVQVG-LTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYE---IYPLLLDCLINGNEEVATASMDAIKK 152 (463)
Q Consensus 81 ~~~~l~~g-L~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~---l~~~li~~l~d~d~~va~~A~~~L~~ 152 (463)
+..+++.- -..++..||++.+..+..++....+. + ..| ++..+-..-.+++.++...|-.+++.
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~---i-----~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGEN---I-----KSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH---H-----HhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 44445554 56679999999999999999865211 1 123 33333455667788888888887764
No 290
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=21.21 E-value=6.3e+02 Score=26.15 Aligned_cols=122 Identities=20% Similarity=0.177 Sum_probs=93.1
Q ss_pred hHHHHHHHhcCChHHHHHccccCCCCcchHHHHHH-------HHHHHhcccccc-chhhch----HHHHHHhhcCCCHHH
Q 012448 29 DAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVV-------CLERIFKTKYGA-SLIPHY----MPFVQVGLTADSHSV 96 (463)
Q Consensus 29 ~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~-------vL~~il~~~~~~-~l~~~~----~~~l~~gL~h~~~~V 96 (463)
+..++=++..-.+...|.-.+..+ -+-+++ .|++. ....+ .+..+| .+.-..-|++.+=..
T Consensus 156 e~LakiiL~s~~~~~FF~~vq~p~-----FdiasdA~~tfK~llt~H--k~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvt 228 (342)
T KOG1566|consen 156 EFLAKIILESTNFEKFFLYVQLPN-----FDIASDAFSTFKELLTRH--KSVVAEFLIRNYDNFFAEVYEKLLRSENYVT 228 (342)
T ss_pred HHHHHHHHcchhHHHHHHHHhccc-----hHHHHHHHHHHHHHHHHh--HHHHHHHHHhChhhhHHHHHHHHhcccceeh
Confidence 567777777777888888777655 343333 33333 22233 355666 555778899999999
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448 97 KRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN 158 (463)
Q Consensus 97 r~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~ 158 (463)
|+-+++.+|.++-...++.. ..+-+..++-+.+++..++|+-..+--.|-.+.+-+-+.+.
T Consensus 229 krqs~kllg~llldr~N~~~-M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAV-MTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHH-HHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 99999999999965555566 88899999999999999999999999999999998876664
No 291
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=21.06 E-value=4.6e+02 Score=27.37 Aligned_cols=105 Identities=10% Similarity=-0.002 Sum_probs=65.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHh--hccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLL--IDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG 159 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~--~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~ 159 (463)
--||+.++.|+-..-|-+...+.+||=...+- +. ++.-+ ...++=.-+++.|.+..+. |++. ..
T Consensus 321 DfFLva~l~~F~E~ARl~ifEtfCRIHqcIti-~m-LA~kLnm~~eeaErwivnlIr~~rl~-Akid-----------Sk 386 (432)
T KOG2758|consen 321 DFFLVALLDEFLENARLLIFETFCRIHQCITI-DM-LADKLNMDPEEAERWIVNLIRTARLD-AKID-----------SK 386 (432)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHheeH-HH-HHHHhcCCHHHHHHHHHHHHHHhhhh-hhhc-----------cc
Confidence 45889999999999999999999998443321 12 33321 1223344444454444433 3322 22
Q ss_pred c-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHH
Q 012448 160 I-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSV 203 (463)
Q Consensus 160 l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~ 203 (463)
+ ++|...+.++ --+ .+...-..+-+|-+.+.-+|.+++.+.
T Consensus 387 lg~Vvmg~~~~s--~~q-Q~ie~tksLS~rsq~la~~lek~~~~~ 428 (432)
T KOG2758|consen 387 LGHVVMGHPTVS--PHQ-QLIEKTKSLSFRSQNLAQQLEKKIQQK 428 (432)
T ss_pred cCceeecCCCCC--HHH-HHHHhccccchhHHHHHHHHHHHHHHh
Confidence 3 4555555555 444 444555667899999999999887654
No 292
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=20.18 E-value=1.6e+02 Score=26.85 Aligned_cols=39 Identities=21% Similarity=0.107 Sum_probs=32.4
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHhc-chHHHHHHHhcc
Q 012448 226 TLETLSILELLYELAEIQHSAEFLSRT-TLLQLLCSLIGN 264 (463)
Q Consensus 226 vLv~lnalell~eLa~t~~g~~~L~~~-gi~~~L~~~i~~ 264 (463)
.-+|+.|+..|..+|.+++|+.-|.+. ..+.+|+..+.+
T Consensus 108 ~~lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~~ 147 (149)
T PF12331_consen 108 CTLRLEALRTLTSFAFSPFGALQLASHPTAIPRLVRALHD 147 (149)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHHc
Confidence 357999999999999999999888866 677777777654
No 293
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=20.12 E-value=6e+02 Score=28.38 Aligned_cols=140 Identities=16% Similarity=0.135 Sum_probs=86.2
Q ss_pred CcHHHHHhHHHHHHHHHhh-HHHHHHHHhcchHHHHHHHhcccccchhhhhh-hhhHhhhhccccccchhcchhhhhhhH
Q 012448 224 NDTLETLSILELLYELAEI-QHSAEFLSRTTLLQLLCSLIGNSATETILRSR-AIMISGRLLSKDDSHMFIDESSAKTVI 301 (463)
Q Consensus 224 ~DvLv~lnalell~eLa~t-~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~-aili~g~i~~f~~~~~~~~~~~~k~~p 301 (463)
.|.|--..++++|..+..+ ....--|....+...|++.+.+.+. .+.++ .+=|..++.+|+++-.++ +.+++
T Consensus 401 ~d~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei--mi~~~~t~~icn~vv~fsnL~~~f---L~~~i- 474 (743)
T COG5369 401 QDDLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI--MIEFPDTIDICNKVVPFSNLGAGF---LEKSI- 474 (743)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc--eeeccchhhhhheeeeccchHHHH---HHhhH-
Confidence 5777788899999999994 4444566677777888888766220 00011 112355667776764333 45644
Q ss_pred HHHHHHhccccCCChhhhhHHHHHHHhhcC---CHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhc
Q 012448 302 SAIDGRLGFLQSQDSDECESALEALGQIGS---SIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAG 375 (463)
Q Consensus 302 ~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs---s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~ 375 (463)
++.+-+++.+.|+..++-..|-+-.+-. ..+-.+.|.+. -+..++....+..... +.-+++-|-|+.-
T Consensus 475 --Idvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Laki---g~~kvl~~~NDpc~~v-q~q~lQilrNftc 545 (743)
T COG5369 475 --IDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKI---GVEKVLSYTNDPCFKV-QHQVLQILRNFTC 545 (743)
T ss_pred --HHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhc---CHHHHHHHhcCccccc-HHHHHHHHHhccc
Confidence 5555567889999999999999986554 34445777764 4455554432222111 5566776666654
Done!