Query 012448
Match_columns 463
No_of_seqs 132 out of 145
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 09:39:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa5_B Importin alpha subunit; 99.8 8.3E-18 2.8E-22 178.2 32.7 401 6-437 97-511 (530)
2 4b8j_A Importin subunit alpha- 99.8 1E-17 3.6E-22 177.0 31.7 403 6-440 84-500 (528)
3 2jdq_A Importin alpha-1 subuni 99.8 8.7E-18 3E-22 172.2 29.9 400 7-436 31-443 (450)
4 3tpo_A Importin subunit alpha- 99.8 5.1E-17 1.8E-21 173.0 30.8 395 5-436 85-497 (529)
5 1wa5_B Importin alpha subunit; 99.8 1.6E-16 5.3E-21 168.4 31.5 363 37-437 85-458 (530)
6 3ul1_B Importin subunit alpha- 99.8 9.9E-17 3.4E-21 170.3 28.6 395 5-436 66-478 (510)
7 2jdq_A Importin alpha-1 subuni 99.8 4.8E-16 1.6E-20 159.2 31.1 357 40-437 21-391 (450)
8 3ul1_B Importin subunit alpha- 99.8 3.4E-16 1.2E-20 166.2 30.1 358 39-436 57-430 (510)
9 4b8j_A Importin subunit alpha- 99.7 8.1E-16 2.8E-20 162.5 29.1 360 38-438 73-445 (528)
10 3tpo_A Importin subunit alpha- 99.7 2.1E-15 7E-20 160.6 32.0 359 38-436 75-449 (529)
11 1jdh_A Beta-catenin; beta-cate 99.7 4.2E-15 1.4E-19 155.6 31.3 381 36-455 14-403 (529)
12 4db8_A Armadillo-repeat protei 99.7 1.7E-15 5.9E-20 143.9 20.3 234 38-282 11-249 (252)
13 2z6h_A Catenin beta-1, beta-ca 99.7 2.2E-13 7.4E-18 148.2 34.7 380 36-454 11-399 (644)
14 4hxt_A De novo protein OR329; 99.7 6.2E-15 2.1E-19 138.9 19.6 238 81-334 3-244 (252)
15 4hxt_A De novo protein OR329; 99.6 1.2E-14 4E-19 136.9 21.2 233 41-284 4-241 (252)
16 2z6h_A Catenin beta-1, beta-ca 99.6 3.7E-13 1.3E-17 146.3 35.0 396 8-447 69-497 (644)
17 1jdh_A Beta-catenin; beta-cate 99.6 7.3E-13 2.5E-17 138.5 34.0 410 9-448 73-501 (529)
18 2z6g_A B-catenin; FULL-length, 99.6 5E-13 1.7E-17 149.2 32.8 377 38-453 149-534 (780)
19 4db8_A Armadillo-repeat protei 99.6 4.2E-14 1.4E-18 134.2 19.9 236 80-331 12-251 (252)
20 1xm9_A Plakophilin 1; armadill 99.6 1E-13 3.5E-18 145.3 24.5 361 39-437 2-450 (457)
21 4db6_A Armadillo repeat protei 99.6 7.5E-14 2.6E-18 129.0 19.8 200 74-282 6-207 (210)
22 3now_A UNC-45 protein, SD10334 99.6 5.4E-13 1.8E-17 148.8 29.0 388 30-457 321-758 (810)
23 3now_A UNC-45 protein, SD10334 99.5 1.3E-12 4.6E-17 145.6 28.6 414 6-455 257-714 (810)
24 2z6g_A B-catenin; FULL-length, 99.5 6.9E-12 2.3E-16 140.0 34.1 395 9-447 206-633 (780)
25 4db6_A Armadillo repeat protei 99.5 4.8E-13 1.7E-17 123.6 17.3 194 37-241 10-209 (210)
26 3l6x_A Catenin delta-1; cateni 99.4 2.2E-11 7.7E-16 131.5 25.1 375 38-450 47-489 (584)
27 1xm9_A Plakophilin 1; armadill 99.4 3.4E-11 1.2E-15 126.1 25.8 175 82-264 4-196 (457)
28 1xqr_A HSPBP1 protein; armadil 99.4 9.1E-12 3.1E-16 123.9 17.0 184 58-248 57-246 (296)
29 4fdd_A Transportin-1; heat rep 99.4 5.2E-11 1.8E-15 133.1 23.6 307 42-375 93-429 (852)
30 3nmz_A APC variant protein; pr 99.3 8.5E-10 2.9E-14 116.0 25.3 349 7-377 43-452 (458)
31 3l6x_A Catenin delta-1; cateni 99.3 1.8E-09 6.1E-14 116.6 28.1 348 76-448 44-445 (584)
32 3nmw_A APC variant protein; AR 99.2 2.9E-10 9.8E-15 115.8 18.5 263 11-283 47-333 (354)
33 1xqr_A HSPBP1 protein; armadil 99.2 3.9E-10 1.3E-14 112.1 15.2 189 9-209 53-249 (296)
34 2vgl_B AP-2 complex subunit be 99.2 1.9E-09 6.5E-14 116.3 21.7 256 40-332 87-348 (591)
35 3nmz_A APC variant protein; pr 99.1 8.7E-10 3E-14 116.0 17.8 257 13-279 165-445 (458)
36 1b3u_A Protein (protein phosph 99.1 7.5E-09 2.6E-13 109.0 24.3 352 55-437 101-471 (588)
37 1ibr_B P95, importin beta-1 su 99.1 9.9E-10 3.4E-14 112.1 16.8 310 43-376 94-438 (462)
38 3nmw_A APC variant protein; AR 99.1 2.4E-09 8.1E-14 109.0 19.1 271 89-377 41-336 (354)
39 1b3u_A Protein (protein phosph 99.1 3.1E-09 1.1E-13 111.9 20.5 339 40-437 204-549 (588)
40 2vgl_B AP-2 complex subunit be 99.1 1.2E-08 4.1E-13 110.0 24.6 356 41-444 15-395 (591)
41 1oyz_A Hypothetical protein YI 99.1 6.5E-09 2.2E-13 100.4 20.3 236 30-331 14-250 (280)
42 4fdd_A Transportin-1; heat rep 99.1 9.9E-10 3.4E-14 122.7 16.6 309 40-375 129-471 (852)
43 1qgr_A Protein (importin beta 99.0 3.1E-08 1E-12 109.6 25.6 309 44-376 95-438 (876)
44 1w63_A Adapter-related protein 99.0 3.6E-08 1.2E-12 107.1 22.0 288 41-375 109-414 (618)
45 2bpt_A Importin beta-1 subunit 99.0 7E-08 2.4E-12 106.5 24.3 312 41-375 136-482 (861)
46 1ibr_B P95, importin beta-1 su 99.0 2.6E-08 8.8E-13 101.6 19.1 278 40-333 129-439 (462)
47 3ltm_A Alpha-REP4; protein eng 98.9 3.9E-08 1.3E-12 90.8 17.5 192 78-336 17-208 (211)
48 3ltj_A Alpharep-4; protein eng 98.9 4E-08 1.4E-12 90.0 17.3 193 73-332 7-199 (201)
49 3opb_A SWI5-dependent HO expre 98.9 3.4E-07 1.2E-11 101.2 27.5 382 30-455 287-703 (778)
50 2bpt_A Importin beta-1 subunit 98.9 9.8E-08 3.3E-12 105.3 23.0 313 42-375 98-440 (861)
51 1oyz_A Hypothetical protein YI 98.9 1E-07 3.4E-12 92.0 20.0 225 40-329 55-280 (280)
52 1w63_A Adapter-related protein 98.9 1.1E-07 3.6E-12 103.3 22.4 288 42-376 73-380 (618)
53 1qgr_A Protein (importin beta 98.9 1.5E-07 5.3E-12 103.9 22.6 315 41-375 130-479 (876)
54 3ltm_A Alpha-REP4; protein eng 98.8 1.9E-07 6.3E-12 86.2 17.2 185 39-284 19-203 (211)
55 3ltj_A Alpharep-4; protein eng 98.7 5.1E-07 1.8E-11 82.6 17.9 183 40-283 15-197 (201)
56 3tt9_A Plakophilin-2; cell adh 98.7 1.4E-07 4.9E-12 90.5 14.3 177 81-265 9-206 (233)
57 1u6g_C TIP120 protein, CAND1; 98.7 5.5E-07 1.9E-11 104.4 20.7 269 39-332 6-285 (1230)
58 2vgl_A Adaptor protein complex 98.6 3.4E-06 1.2E-10 91.7 23.8 184 39-241 74-270 (621)
59 3opb_A SWI5-dependent HO expre 98.6 3.1E-06 1.1E-10 93.5 23.0 241 80-375 457-728 (778)
60 1u6g_C TIP120 protein, CAND1; 98.6 4.2E-07 1.4E-11 105.4 17.0 229 40-283 49-283 (1230)
61 3tt9_A Plakophilin-2; cell adh 98.6 4.3E-07 1.5E-11 87.2 13.0 197 38-241 7-229 (233)
62 3grl_A General vesicular trans 98.6 1E-05 3.5E-10 87.6 25.0 350 41-446 23-405 (651)
63 2qk2_A LP04448P; mini spindles 98.6 3.1E-07 1.1E-11 87.1 11.5 188 36-242 13-206 (242)
64 2qk1_A Protein STU2; STU2P, XM 98.4 1.6E-06 5.6E-11 83.6 12.4 196 34-241 12-220 (249)
65 2vgl_A Adaptor protein complex 98.4 0.00019 6.3E-09 78.0 28.3 324 81-444 75-446 (621)
66 3grl_A General vesicular trans 98.3 3.9E-05 1.3E-09 83.0 21.2 297 35-341 56-405 (651)
67 4gmo_A Putative uncharacterize 98.3 7.4E-07 2.5E-11 98.0 7.6 166 80-254 35-228 (684)
68 2db0_A 253AA long hypothetical 98.0 0.0011 3.9E-08 61.1 20.1 220 118-378 24-249 (253)
69 3tjz_B Coatomer subunit gamma; 97.9 0.00043 1.5E-08 70.2 18.8 206 7-241 21-241 (355)
70 2qk2_A LP04448P; mini spindles 97.8 0.00042 1.4E-08 65.3 15.7 186 130-333 19-207 (242)
71 2qk1_A Protein STU2; STU2P, XM 97.7 0.00024 8.2E-09 68.3 11.0 115 40-157 105-222 (249)
72 2x1g_F Cadmus; transport prote 97.6 0.0079 2.7E-07 67.8 23.8 349 57-441 437-819 (971)
73 1te4_A Conserved protein MTH18 97.5 9.6E-06 3.3E-10 69.7 -1.6 122 77-238 9-130 (131)
74 1te4_A Conserved protein MTH18 97.3 3.8E-05 1.3E-09 65.9 0.6 118 39-194 12-129 (131)
75 3dad_A FH1/FH2 domain-containi 97.3 0.003 1E-07 63.2 14.0 182 82-270 120-322 (339)
76 3tjz_B Coatomer subunit gamma; 97.2 0.048 1.6E-06 55.2 22.0 272 58-377 41-318 (355)
77 4gmo_A Putative uncharacterize 97.2 0.00093 3.2E-08 73.3 10.1 191 40-239 35-256 (684)
78 2of3_A ZYG-9; multifunctional 96.8 0.0083 2.8E-07 58.4 12.0 111 26-156 124-237 (266)
79 1wa5_C Importin alpha RE-expor 96.8 0.28 9.5E-06 55.3 26.2 310 31-375 81-434 (960)
80 2db0_A 253AA long hypothetical 96.7 0.032 1.1E-06 51.6 14.0 141 80-242 107-247 (253)
81 4hat_C Exportin-1; heat repeat 96.7 0.011 3.7E-07 67.8 13.7 139 55-201 467-621 (1023)
82 2x19_B Importin-13; nuclear tr 96.6 0.14 4.8E-06 57.3 21.7 172 57-241 423-599 (963)
83 3b2a_A TON_1937, putative unch 96.5 0.031 1.1E-06 53.4 12.8 177 173-377 37-220 (265)
84 4ady_A RPN2, 26S proteasome re 96.5 0.027 9.4E-07 63.6 14.6 218 60-331 456-676 (963)
85 3b2a_A TON_1937, putative unch 96.4 0.026 8.7E-07 54.0 11.8 184 40-243 34-220 (265)
86 2x19_B Importin-13; nuclear tr 96.4 0.54 1.9E-05 52.5 24.9 172 55-241 463-649 (963)
87 4ffb_C Protein STU2; tubulin f 96.3 0.041 1.4E-06 52.8 12.9 191 36-241 9-212 (278)
88 3ibv_A Exportin-T; karyopherin 95.8 1.1 3.8E-05 51.0 23.5 335 77-456 487-887 (980)
89 2of3_A ZYG-9; multifunctional 95.7 0.06 2.1E-06 52.3 11.0 191 36-249 43-246 (266)
90 2x1g_F Cadmus; transport prote 95.7 0.15 5E-06 57.4 15.6 132 56-200 479-617 (971)
91 1wa5_C Importin alpha RE-expor 95.6 0.14 4.8E-06 57.8 14.8 178 56-242 420-629 (960)
92 4ady_A RPN2, 26S proteasome re 94.9 0.48 1.7E-05 53.6 16.1 135 131-284 583-719 (963)
93 4ffb_C Protein STU2; tubulin f 94.5 0.077 2.6E-06 50.9 7.7 111 40-157 103-214 (278)
94 2iw3_A Elongation factor 3A; a 94.4 0.51 1.7E-05 53.7 15.1 194 33-251 90-294 (986)
95 3m1i_C Exportin-1; heat repeat 94.3 1.9 6.5E-05 49.0 19.8 139 56-201 468-621 (1049)
96 2iw3_A Elongation factor 3A; a 93.9 3.1 0.0001 47.4 20.2 303 42-376 17-328 (986)
97 3u0r_A Apoptosis inhibitor 5; 93.7 6.1 0.00021 41.3 20.3 301 81-432 31-355 (507)
98 3gjx_A Exportin-1; transport, 92.5 9.7 0.00033 43.8 21.7 137 55-202 493-648 (1073)
99 2fv2_A RCD1 required for cell 91.5 2 6.7E-05 41.4 12.1 157 87-252 10-185 (268)
100 3vld_A DNA mismatch repair pro 90.9 2.6 8.9E-05 44.0 13.3 192 60-272 95-301 (500)
101 3l9t_A Putative uncharacterize 90.2 3.3 0.00011 39.4 12.3 156 28-207 56-216 (240)
102 3dad_A FH1/FH2 domain-containi 89.4 2.5 8.6E-05 42.2 11.3 118 130-251 122-242 (339)
103 1upk_A MO25 protein; transfera 89.1 19 0.00066 35.8 18.0 231 118-401 70-309 (341)
104 3oc3_A Helicase MOT1, MOT1; re 87.8 0.33 1.1E-05 51.9 3.9 112 78-206 297-410 (800)
105 3qml_C Protein SLS1, nucleotid 87.1 4.4 0.00015 39.9 11.2 106 82-198 73-189 (315)
106 3oc3_A Helicase MOT1, MOT1; re 86.7 0.44 1.5E-05 51.0 4.0 161 54-240 241-403 (800)
107 4hat_C Exportin-1; heat repeat 85.1 57 0.002 37.1 22.8 179 183-377 426-620 (1023)
108 1upk_A MO25 protein; transfera 85.1 17 0.00059 36.2 14.4 225 204-460 71-312 (341)
109 3l9t_A Putative uncharacterize 83.2 8.4 0.00029 36.5 10.7 140 79-245 70-212 (240)
110 3eg5_B Protein diaphanous homo 83.0 10 0.00035 38.3 12.2 138 100-243 87-248 (383)
111 3u0r_A Apoptosis inhibitor 5; 82.9 12 0.0004 39.2 12.6 132 42-198 32-163 (507)
112 3gjx_A Exportin-1; transport, 81.5 59 0.002 37.3 19.0 226 126-377 28-277 (1073)
113 3ibv_A Exportin-T; karyopherin 80.6 3.6 0.00012 46.8 8.6 151 78-241 191-361 (980)
114 3m1i_C Exportin-1; heat repeat 75.3 3.9 0.00013 46.5 6.8 171 60-241 432-618 (1049)
115 2f31_A Diaphanous protein homo 75.0 15 0.0005 34.2 9.7 115 93-243 67-182 (233)
116 2fv2_A RCD1 required for cell 69.3 47 0.0016 31.8 11.7 103 187-292 74-182 (268)
117 3a6p_A Exportin-5; exportin-5, 67.7 54 0.0019 37.9 14.2 203 31-241 85-331 (1204)
118 3a6p_A Exportin-5; exportin-5, 66.2 1.9E+02 0.0065 33.3 21.6 120 130-264 15-145 (1204)
119 1lsh_A Lipovitellin (LV-1N, LV 64.7 48 0.0016 37.9 12.8 154 55-241 409-576 (1056)
120 1x5b_A Signal transducing adap 64.6 22 0.00076 31.4 8.0 65 177-241 60-125 (163)
121 1ho8_A Vacuolar ATP synthase s 62.8 21 0.00072 37.2 8.5 60 92-155 417-476 (480)
122 3ldz_A STAM-1, signal transduc 61.7 59 0.002 27.7 10.0 75 78-155 40-114 (140)
123 2bnx_A Diaphanous protein homo 61.6 37 0.0013 34.2 10.0 116 93-243 71-186 (386)
124 3o2t_A Symplekin; heat repeat, 61.6 1.3E+02 0.0043 30.4 13.9 147 77-241 23-183 (386)
125 3gs3_A Symplekin, LD45768P; he 59.5 1E+02 0.0035 29.2 12.2 146 78-241 14-173 (257)
126 1lrv_A LRV, leucine-rich repea 57.8 19 0.00064 34.0 6.6 17 217-234 223-239 (244)
127 1dvp_A HRS, hepatocyte growth 55.3 33 0.0011 31.6 7.8 68 174-241 47-115 (220)
128 1juq_A ADP-ribosylation factor 53.4 73 0.0025 28.2 9.5 69 174-242 55-129 (171)
129 3g2s_A C-terminal fragment of 52.6 1.1E+02 0.0039 26.3 11.0 93 58-156 29-127 (149)
130 3c18_A Nucleotidyltransferase- 50.9 29 0.00098 33.8 6.7 107 331-454 133-253 (290)
131 1x5b_A Signal transducing adap 48.1 1.1E+02 0.0038 26.8 9.7 74 79-155 51-125 (163)
132 1juq_A ADP-ribosylation factor 46.6 1.5E+02 0.0052 26.1 11.0 76 78-156 48-129 (171)
133 1lrv_A LRV, leucine-rich repea 43.8 28 0.00094 32.8 5.3 17 312-328 227-243 (244)
134 2f31_A Diaphanous protein homo 42.9 80 0.0028 29.1 8.4 80 28-108 33-124 (233)
135 1lsh_A Lipovitellin (LV-1N, LV 41.6 61 0.0021 37.0 8.6 165 253-437 391-577 (1056)
136 3gs3_A Symplekin, LD45768P; he 41.0 1.4E+02 0.0048 28.2 9.8 70 75-153 48-117 (257)
137 3zyq_A Hepatocyte growth facto 39.5 1.1E+02 0.0037 28.2 8.7 74 78-154 43-117 (226)
138 1mhq_A ADP-ribosylation factor 39.3 1.8E+02 0.0063 24.9 10.2 76 78-156 36-117 (148)
139 3eg5_B Protein diaphanous homo 37.0 35 0.0012 34.3 5.1 62 93-158 133-194 (383)
140 3ldz_A STAM-1, signal transduc 34.2 98 0.0034 26.3 6.9 89 127-241 25-114 (140)
141 1elk_A Target of MYB1; superhe 33.2 1.5E+02 0.005 25.7 8.0 61 181-241 66-130 (157)
142 1vsy_5 Proteasome activator BL 33.1 7.4 0.00025 44.4 -0.7 121 31-157 752-875 (997)
143 3o2t_A Symplekin; heat repeat, 31.4 1.2E+02 0.0041 30.5 8.0 99 142-254 41-140 (386)
144 1ho8_A Vacuolar ATP synthase s 28.0 5.2E+02 0.018 26.7 21.2 60 313-375 416-476 (480)
145 3qml_C Protein SLS1, nucleotid 27.5 22 0.00076 34.9 1.7 132 135-276 37-181 (315)
146 1elk_A Target of MYB1; superhe 26.5 3.1E+02 0.011 23.6 9.4 75 78-155 51-130 (157)
147 1mhq_A ADP-ribosylation factor 25.2 2.1E+02 0.0073 24.4 7.5 65 177-241 46-116 (148)
148 2npp_B PP2A, B subunit, serine 20.4 4.1E+02 0.014 27.2 9.7 106 93-209 297-410 (449)
No 1
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.82 E-value=8.3e-18 Score=178.23 Aligned_cols=401 Identities=13% Similarity=0.092 Sum_probs=296.1
Q ss_pred CCCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccc--cc-hhhchH
Q 012448 6 SMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG--AS-LIPHYM 82 (463)
Q Consensus 6 ~~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~--~~-l~~~~~ 82 (463)
..+|+..-..++..|.+.-...++...+.++....+|.|+.+|++.+ ++..+..++.+|..+...... .. ......
T Consensus 97 ~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 175 (530)
T 1wa5_B 97 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSAQTKVVVDADAV 175 (530)
T ss_dssp SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCH
Confidence 34566666666666654432222334566788889999999998762 377888899999998542111 11 235678
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC-CCcc
Q 012448 83 PFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP-NGID 161 (463)
Q Consensus 83 ~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~-~~l~ 161 (463)
+.|...|.++++.||+.+++.++.+..+. .. ..+.+.+.++++.++..+.+++..+.+.|+.+|..++.+. +...
T Consensus 176 ~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~---~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 176 PLFIQLLYTGSVEVKEQAIWALGNVAGDS---TD-YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCC---cc-chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 99999999999999999999999999876 55 6677788899999999999999999999999999999886 4445
Q ss_pred ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 162 IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 162 ~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
.....++++ .|.+++.+.++.+|..++.++.+++..+++..+.+.+.|+++.++..|.+ .|.-++..++..|..++.
T Consensus 252 ~~~~~~~l~--~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~-~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 252 WSVVSQALP--TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH-ESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp HHHHGGGHH--HHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHH--HHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC-CChhhHHHHHHHHHHHHc
Confidence 455567777 77778888899999999999999999999999999999999999999999 999999999999999998
Q ss_pred -hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccc-cc-hhcchhhhhhhHHHHHHHhccccCCChhh
Q 012448 242 -IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDD-SH-MFIDESSAKTVISAIDGRLGFLQSQDSDE 318 (463)
Q Consensus 242 -t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~-~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~~~ 318 (463)
.+...+.+.+.|++..|+..+.+. ++-+|..++.+.+.+..... .. .++ -.+.+|.+++ ++.++++.+
T Consensus 329 ~~~~~~~~~~~~~~l~~L~~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~---~~~~l~~L~~----lL~~~~~~v 399 (530)
T 1wa5_B 329 GNDLQTQVVINAGVLPALRLLLSSP--KENIKKEACWTISNITAGNTEQIQAVI---DANLIPPLVK----LLEVAEYKT 399 (530)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH---HTTCHHHHHH----HHHHSCHHH
T ss_pred CCHHHHHHHHHcchHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHH---HCCCHHHHHH----HHhcCCHHH
Confidence 677888889999999999999864 67788888888888775211 11 112 1244556555 345688999
Q ss_pred hhHHHHHHHhhcC--CH--HHHHHHhhcCchhHHHHHHHHHhhccchh-hHhHHhhhHHHhcCCCchhhhhh-hhhHHHH
Q 012448 319 CESALEALGQIGS--SI--QGATLLLLCLPPAARHVIDAAFDRQGHGK-QLAALHGLANIAGKTRSEDKIIL-NADAEES 392 (463)
Q Consensus 319 ~~~A~dtlG~Igs--s~--eGk~~L~~~~~~~~~~~l~~~~~~~~~~~-k~r~L~al~~Il~~~r~~~~~il-~~~~e~~ 392 (463)
+..|+|+||++.. +. +..+.+.. .+.+..++..+... +.. +..++.+|.+|+... +..... ....+.
T Consensus 400 ~~~a~~aL~~l~~~~~~~~~~~~~l~~--~~~l~~L~~ll~~~--~~~v~~~al~aL~~l~~~~--~~~~~~~~~~~~~- 472 (530)
T 1wa5_B 400 KKEACWAISNASSGGLQRPDIIRYLVS--QGCIKPLCDLLEIA--DNRIIEVTLDALENILKMG--EADKEARGLNINE- 472 (530)
T ss_dssp HHHHHHHHHHHHHHTTTCTHHHHHHHH--TTCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHH--HHHHHHHTCSSCH-
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHH--CCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhh--hhhhhcccccccH-
Confidence 9999999999975 33 44444443 23555555443321 222 788999999999743 210000 000011
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcC
Q 012448 393 LRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVAR 437 (463)
Q Consensus 393 l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~ 437 (463)
....+ +.. .-+..+..+. .|-++++..|+.++..++.-
T Consensus 473 ~~~~l-~~~------g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 473 NADFI-EKA------GGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHH-HHT------THHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHHHH-HHc------CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 22222 321 2355667777 88999999999999888764
No 2
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.82 E-value=1e-17 Score=176.99 Aligned_cols=403 Identities=14% Similarity=0.091 Sum_probs=299.0
Q ss_pred CCCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc-----hhhc
Q 012448 6 SMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS-----LIPH 80 (463)
Q Consensus 6 ~~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-----l~~~ 80 (463)
..+|+..-..++..+.+.-...++.....++....+|.|+.+|++.+ .+..+..++.+|..+.. .... ....
T Consensus 84 ~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~--~~~~~~~~~~~~g 160 (528)
T 4b8j_A 84 YSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED-FPQLQFEAAWALTNIAS--GTSENTKVVIDHG 160 (528)
T ss_dssp TSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTT-CHHHHHHHHHHHHHHHT--SCHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhC--CCHHHHHHHHhCC
Confidence 44566666666666654422223345677888899999999998753 36788888999999854 2221 2335
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhh-cCCchHHHHHHHHHHHHHhCCCCC
Q 012448 81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCL-INGNEEVATASMDAIKKLAGFPNG 159 (463)
Q Consensus 81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l-~d~d~~va~~A~~~L~~lak~~~~ 159 (463)
..+.|...|.++++.||+.++++++++..+. .. ....+.+.++++.++.++ .+++..+.+.|+.+|..++...+.
T Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~---~~-~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~ 236 (528)
T 4b8j_A 161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDS---PK-CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ 236 (528)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC---HH-HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC---hh-hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC
Confidence 7899999999999999999999999999876 55 677888899999999999 788999999999999999998655
Q ss_pred ccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHH
Q 012448 160 IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYEL 239 (463)
Q Consensus 160 l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eL 239 (463)
.......++++ .|.+++.+.+..++..++.++.+++..+++..+.+.+.|+++.++..|.+ .|.-++..|+..|..+
T Consensus 237 ~~~~~~~~~l~--~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 237 PSFEQTRPALP--ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-PSPSVLIPALRTVGNI 313 (528)
T ss_dssp CCHHHHTTHHH--HHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHH--HHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC-CChhHHHHHHHHHHHH
Confidence 54445567777 78878888999999999999999999999999999999999999999999 8999999999999999
Q ss_pred Hh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccc-cc-hhcchhhhhhhHHHHHHHhccccCCCh
Q 012448 240 AE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDD-SH-MFIDESSAKTVISAIDGRLGFLQSQDS 316 (463)
Q Consensus 240 a~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~-~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~ 316 (463)
+. .+...+.+.+.|++..|+..+.+.. ++-++..+..+.+-+..... .. .++ -.+.+|.+++ ++.+.|+
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~A~~~L~nl~~~~~~~~~~~~---~~~~i~~L~~----lL~~~~~ 385 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNL-KKSIKKEACWTISNITAGNKDQIQAVI---NAGIIGPLVN----LLQTAEF 385 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTSCHHHHHHHH---HTTCHHHHHH----HHHHSCH
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCC-cHHHHHHHHHHHHHHHCCCHHHHHHHH---HCCCHHHHHH----HHhcCCH
Confidence 99 7888899999999999999998532 56667777777777665211 11 112 1244556555 3456789
Q ss_pred hhhhHHHHHHHhhcCC--HHHHHHHhhcCchhHHHHHHHHHhhccchh-hHhHHhhhHHHhcCCCchhhhhh-hhhHHHH
Q 012448 317 DECESALEALGQIGSS--IQGATLLLLCLPPAARHVIDAAFDRQGHGK-QLAALHGLANIAGKTRSEDKIIL-NADAEES 392 (463)
Q Consensus 317 ~~~~~A~dtlG~Igss--~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~-k~r~L~al~~Il~~~r~~~~~il-~~~~e~~ 392 (463)
.++..|+|+|++++.. .+....+... +.+..++..... .+.. +..++.+|.+|+... +..... ....+.
T Consensus 386 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~i~~L~~lL~~--~d~~v~~~al~~L~~l~~~~--~~~~~~~~~~~~~- 458 (528)
T 4b8j_A 386 DIKKEAAWAISNATSGGSHDQIKYLVSE--GCIKPLCDLLIC--PDIRIVTVCLEGLENILKVG--ETDKTLAAGDVNV- 458 (528)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHT--TCHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHH--HHHHHHHTCSCCH-
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHC--CCHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHH--HHhhhcccccccH-
Confidence 9999999999999874 6666666542 345555444322 1222 889999999999743 100000 000111
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchh
Q 012448 393 LRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWC 440 (463)
Q Consensus 393 l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg 440 (463)
...++ +.. .-++.+..+. .+.++++..|+.++..++...-+
T Consensus 459 ~~~~i-~~~------~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~ 500 (528)
T 4b8j_A 459 FSQMI-DEA------EGLEKIENLQSHDNNEIYEKAVKILEAYWMDEED 500 (528)
T ss_dssp HHHHH-HHT------THHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred HHHHH-HHC------CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 23333 322 3366777788 89999999999999999877554
No 3
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.82 E-value=8.7e-18 Score=172.21 Aligned_cols=400 Identities=16% Similarity=0.092 Sum_probs=286.8
Q ss_pred CCChHHHHHHhhhhccCCCCCChHHHHHHHhc-CChHHHHHccccCCCCcchHHHHHHHHHHHhccccc--c-chhhchH
Q 012448 7 MDDSNQLLDSASDFAYHPGVQNDAAAKKFLDR-FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG--A-SLIPHYM 82 (463)
Q Consensus 7 ~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~-~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~--~-~l~~~~~ 82 (463)
.+|+..-..++..+.+.-....+...++++.. ..+|.|+.+|++.+ ++..+..++.+|..+...... . .......
T Consensus 31 s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 109 (450)
T 2jdq_A 31 SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNSLQTRIVIQAGAV 109 (450)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCH
Confidence 45555444444444331100012234567777 88999999998762 377888889999998542111 1 1235679
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC-CchHHHHHHHHHHHHHhCCC-CCc
Q 012448 83 PFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN-GNEEVATASMDAIKKLAGFP-NGI 160 (463)
Q Consensus 83 ~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d-~d~~va~~A~~~L~~lak~~-~~l 160 (463)
+.|...|+++++.||+.+++.++.+..+. .. ..+.+.+.++++.++..+.+ ++..+.+.|+.+|..+++.. +..
T Consensus 110 ~~L~~lL~~~~~~vr~~a~~~L~~l~~~~---~~-~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 110 PIFIELLSSEFEDVQEQAVWALGNIAGDS---TM-CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHccCC---HH-HHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999877 55 66778888999999999995 78999999999999999876 433
Q ss_pred cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHH
Q 012448 161 DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELA 240 (463)
Q Consensus 161 ~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa 240 (463)
...+-.+.++ .|.+.+.+.++.+|..++..+.+++..+++..+.+.+.|+++.++..+.+ +|.-++.+++..|..++
T Consensus 186 ~~~~~~~~l~--~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~ 262 (450)
T 2jdq_A 186 EFAKVSPCLN--VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH-NDYKVVSPALRAVGNIV 262 (450)
T ss_dssp CGGGTGGGHH--HHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC-SCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH--HHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC-CchhHHHHHHHHHHHHh
Confidence 2222256777 77778888899999999999999999999999999999999999999998 99999999999999999
Q ss_pred h-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcccc-ccc-hhcchhhhhhhHHHHHHHhccccCCChh
Q 012448 241 E-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKD-DSH-MFIDESSAKTVISAIDGRLGFLQSQDSD 317 (463)
Q Consensus 241 ~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~-~~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~~ 317 (463)
. .+...+.+.+.|+++.|+..+.+ .++-+|..++.+.|.+.... ... .+++ .+..|.+++ .+.++++.
T Consensus 263 ~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~~----~l~~~~~~ 333 (450)
T 2jdq_A 263 TGDDIQTQVILNCSALQSLLHLLSS--PKESIKKEACWTISNITAGNRAQIQTVID---ANIFPALIS----ILQTAEFR 333 (450)
T ss_dssp TSCHHHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHH---TTHHHHHHH----HHHHSCHH
T ss_pred hCChHHHHHHHHCccHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHH---CCCHHHHHH----HHhcCCHH
Confidence 9 66777888999999999999986 46778889998888887521 111 1121 233555544 44567899
Q ss_pred hhhHHHHHHHhhcC--CHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhh-hHHHHHH
Q 012448 318 ECESALEALGQIGS--SIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNA-DAEESLR 394 (463)
Q Consensus 318 ~~~~A~dtlG~Igs--s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~-~~e~~l~ 394 (463)
++..|+|+||++.. +.+..+.+.. .+.+..+++.+... ....+..++.++.+++... +....... ..+. +.
T Consensus 334 v~~~a~~~L~~l~~~~~~~~~~~l~~--~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~--~~~~~~~~~~~~~-~~ 407 (450)
T 2jdq_A 334 TRKEAAWAITNATSGGSAEQIKYLVE--LGCIKPLCDLLTVM-DSKIVQVALNGLENILRLG--EQEAKRNGTGINP-YC 407 (450)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHH--HTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHH--HHHHHHSCSCCCH-HH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH--CCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhc--hhhhhccccchhH-HH
Confidence 99999999999975 5666554543 23444444433221 1122888999999998743 21100000 0011 22
Q ss_pred HHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhc
Q 012448 395 HLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVA 436 (463)
Q Consensus 395 ~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~ 436 (463)
..+ +...+ +..+..+. .|-+++|..++.++..+..
T Consensus 408 ~~l-~~~g~------~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 408 ALI-EEAYG------LDKIEFLQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHH-HHHHC------HHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-HHcCc------HHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 233 32222 44466667 7888999999999987764
No 4
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.79 E-value=5.1e-17 Score=173.03 Aligned_cols=395 Identities=12% Similarity=0.066 Sum_probs=294.5
Q ss_pred CCCCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc-----hhh
Q 012448 5 LSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS-----LIP 79 (463)
Q Consensus 5 ~~~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-----l~~ 79 (463)
...+|++..+++...+-..-..-++.-...+++...+|.|+.+|+..+ .+..+..++.+|..+- .+... +..
T Consensus 85 l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~-~~~~q~~Aa~aL~nia--~~~~~~~~~vv~~ 161 (529)
T 3tpo_A 85 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-CSPIQFESAWALTNIA--SGTSEQTKAVVDG 161 (529)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTT-CHHHHHHHHHHHHHHH--TSCHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHH--cCCHHHHHHHHHC
Confidence 345778877777666543221223344678889999999999997643 4677778888999984 33321 233
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCch-----HHHHHHHHHHHHHh
Q 012448 80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNE-----EVATASMDAIKKLA 154 (463)
Q Consensus 80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~-----~va~~A~~~L~~la 154 (463)
...+.|+..|.++++.||+.|+|+++.++.++ .. ..+.+.+.|.++.++..+..++. ++.+.+..+|..++
T Consensus 162 Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~---~~-~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 162 GAIPAFISLLASPHAHISEQAVWALGNIAGAG---SA-FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC---HH-HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999877 66 78889999999999999988764 35678899999999
Q ss_pred CCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHH
Q 012448 155 GFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSIL 233 (463)
Q Consensus 155 k~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnal 233 (463)
++.... ......++++ .|.+++.+.++.++..++..+..++..+.+..+.++++|+++.++..|.+ +|.-++.+++
T Consensus 238 ~~~~~~~~~~~~~~~lp--~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~a~ 314 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILP--TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-TELPIVTPAL 314 (529)
T ss_dssp CCCTTCCCHHHHHHHHH--HHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC-SCHHHHHHHH
T ss_pred hcccchhhHHHHhhHHH--HHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC-CChhHHHHHH
Confidence 887533 2222345566 67778888999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcccccc--chhcchhhhhhhHHHHHHHhcc
Q 012448 234 ELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDS--HMFIDESSAKTVISAIDGRLGF 310 (463)
Q Consensus 234 ell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~--~~~~~~~~~k~~p~~l~~~f~~ 310 (463)
..|..++. ++...+.+.+.|++..|+.++.+ .++-++..+..+.+-+.....- ..++ -.+.+|.++. +
T Consensus 315 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~--~~~~i~~~a~~aL~nl~~~~~~~~~~v~---~~g~i~~Lv~----l 385 (529)
T 3tpo_A 315 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN--PKTNIQKEATWTMSNITAGRQDQIQQVV---NHGLVPFLVG----V 385 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC--SSHHHHHHHHHHHHHHHTSCHHHHHHHH---HTTHHHHHHH----H
T ss_pred HHHHHHHccchHHHHHHhhcccHHHHHHHHcC--CCHHHHHHHHHHHHHHhcccHHHHHHHH---hcCcHHHHHH----H
Confidence 99999998 78888999999999999999875 4566677787777777652111 1122 1234555555 4
Q ss_pred ccCCChhhhhHHHHHHHhhcC--CHHHHHHHhhcCchhHHHHHHHHHhhccchh-hHhHHhhhHHHhcCCCchhhhhhhh
Q 012448 311 LQSQDSDECESALEALGQIGS--SIQGATLLLLCLPPAARHVIDAAFDRQGHGK-QLAALHGLANIAGKTRSEDKIILNA 387 (463)
Q Consensus 311 ~~~~d~~~~~~A~dtlG~Igs--s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~-k~r~L~al~~Il~~~r~~~~~il~~ 387 (463)
+.+.+..++..|+|+|+++.+ +.+....|... +.+..+++... ..+.. ...+|++|.+|+... + . ..
T Consensus 386 L~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~--g~i~~L~~LL~--~~d~~i~~~~L~aL~nil~~~--~--~--~~ 455 (529)
T 3tpo_A 386 LSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC--GIIEPLMNLLS--AKDTKIIQVILDAISNIFQAA--E--K--LG 455 (529)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT--TCHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHH--H--T--TT
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC--cCHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHh--H--h--cc
Confidence 578889999999999999975 67776666652 45555544331 11222 778899999999743 1 0 11
Q ss_pred hHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhc
Q 012448 388 DAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVA 436 (463)
Q Consensus 388 ~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~ 436 (463)
+.+. +..++ +...+ ++.|-.+. -+-.||+-.|++++..-+.
T Consensus 456 ~~~~-~~~~i-ee~gg------l~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 456 ETEK-LSIMI-EECGG------LDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp CHHH-HHHHH-HHTTC------HHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred ChHH-HHHHH-HHCCc------HHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 2333 55454 65433 56666676 7889999999999987643
No 5
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.78 E-value=1.6e-16 Score=168.44 Aligned_cols=363 Identities=12% Similarity=0.112 Sum_probs=275.6
Q ss_pred hcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---c-hhhchHHHHHHhhcCC-CHHHHHHHHHHHHHHHhCC
Q 012448 37 DRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---S-LIPHYMPFVQVGLTAD-SHSVKRLACKTVTCLLEDS 111 (463)
Q Consensus 37 ~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~-l~~~~~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~ 111 (463)
-...++.|+..|++.+ +..+..++..|+++++..... . ....+.+.|+..|.++ ++.||..+++.++.+..+.
T Consensus 85 ~~~~i~~lv~~L~s~~--~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDD--MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp --CCHHHHHHHHSCSS--HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 4456999999998765 778888888999998653222 1 2346799999999998 9999999999999999876
Q ss_pred chhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHH
Q 012448 112 DLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVL 190 (463)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~ 190 (463)
.. ..+.+++.++++.++.++.+++..+...|+.+|..|+...+.. +.++..++++ .|.+++.+.+..+|..++
T Consensus 163 ---~~-~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~--~L~~ll~~~~~~v~~~a~ 236 (530)
T 1wa5_B 163 ---SA-QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME--PILGLFNSNKPSLIRTAT 236 (530)
T ss_dssp ---HH-HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH--HHHHGGGSCCHHHHHHHH
T ss_pred ---HH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHH--HHHHHhccCCHHHHHHHH
Confidence 55 6678888999999999999999999999999999999886544 5667778888 787788788889999999
Q ss_pred HHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccch
Q 012448 191 SLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATET 269 (463)
Q Consensus 191 el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dp 269 (463)
.++.+++.............|+++.++..+.+ +|.-++.+++..|..|+. .+...+.+.+.|++..|+..+.+ .++
T Consensus 237 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~--~~~ 313 (530)
T 1wa5_B 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH--EST 313 (530)
T ss_dssp HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC--SCH
T ss_pred HHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC--CCh
Confidence 99999997752222344557999999999999 999999999999999998 67788999999999999999975 567
Q ss_pred hhhhhhhhHhhhhccccc-cc-hhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhhcCchh
Q 012448 270 ILRSRAIMISGRLLSKDD-SH-MFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLLCLPPA 346 (463)
Q Consensus 270 l~r~~aili~g~i~~f~~-~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~~ 346 (463)
-++.+++.+.|.+..... .. .++ -.+..|.++. ++.++++.++..|+|+||.|+. +.+..+.+.. .+.
T Consensus 314 ~v~~~a~~~L~~l~~~~~~~~~~~~---~~~~l~~L~~----lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~--~~~ 384 (530)
T 1wa5_B 314 LVQTPALRAVGNIVTGNDLQTQVVI---NAGVLPALRL----LLSSPKENIKKEACWTISNITAGNTEQIQAVID--ANL 384 (530)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHH---HTTHHHHHHH----HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTC
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHH---HcchHHHHHH----HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCC
Confidence 778888888888775211 11 111 1233444443 5677789999999999999997 6666665554 345
Q ss_pred HHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHH
Q 012448 347 ARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRL 425 (463)
Q Consensus 347 ~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~ 425 (463)
+..++..+.+ .....|..+..+|+++....... .+ ....++ + ..-+..+..++ .+.|++|.
T Consensus 385 l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~--------~~-~~~~l~-~-------~~~l~~L~~ll~~~~~~v~~ 446 (530)
T 1wa5_B 385 IPPLVKLLEV-AEYKTKKEACWAISNASSGGLQR--------PD-IIRYLV-S-------QGCIKPLCDLLEIADNRIIE 446 (530)
T ss_dssp HHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTTTC--------TH-HHHHHH-H-------TTCHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCCCc--------HH-HHHHHH-H-------CCCHHHHHHHHhCCCHHHHH
Confidence 6666655432 11122888999999998643110 01 122222 2 23566777777 78999999
Q ss_pred HHHHHHHHhhcC
Q 012448 426 AGYRMITGLVAR 437 (463)
Q Consensus 426 A~~~~l~~l~~~ 437 (463)
.++..|..++..
T Consensus 447 ~al~aL~~l~~~ 458 (530)
T 1wa5_B 447 VTLDALENILKM 458 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988864
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.77 E-value=9.9e-17 Score=170.30 Aligned_cols=395 Identities=12% Similarity=0.065 Sum_probs=292.2
Q ss_pred CCCCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc-----hhh
Q 012448 5 LSMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS-----LIP 79 (463)
Q Consensus 5 ~~~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-----l~~ 79 (463)
+..+|++.-++++..|-.--..-.+.-..++++...+|.|+.+|+.. +.+..+..++-+|..+ +.+..+ +..
T Consensus 66 l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~-~~~~lq~~Aa~aL~ni--as~~~e~~~~vv~~ 142 (510)
T 3ul1_B 66 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-DCSPIQFESAWALTNI--ASGTSEQTKAVVDG 142 (510)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT-TCHHHHHHHHHHHHHH--HTSCHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC-CCHHHHHHHHHHHHHH--hcCCHHHHHHHHHC
Confidence 45678887777765543211111222357788888999999999754 3467777888899998 333322 233
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCch-----HHHHHHHHHHHHHh
Q 012448 80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNE-----EVATASMDAIKKLA 154 (463)
Q Consensus 80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~-----~va~~A~~~L~~la 154 (463)
...+.|+..|.++++.||+-|+|++++++.+. .. ..+.+.+.|.++.++..+..++. .+.+.+..+|..++
T Consensus 143 GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~---~~-~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 143 GAIPAFISLLASPHAHISEQAVWALGNIAGDG---SA-FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC---HH-HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999887 66 78899999999999999988764 35678899999999
Q ss_pred CCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHH
Q 012448 155 GFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSIL 233 (463)
Q Consensus 155 k~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnal 233 (463)
++.... ....-.++++ .|.+++.+.++.++..++.++.+++..+.+..+.+.++|+++.++..|.+ +|.-++.+++
T Consensus 219 ~~~~~~~~~~~~~~~lp--~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~al 295 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILP--TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-TELPIVTPAL 295 (510)
T ss_dssp CCCSSCCCHHHHHHHHH--HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC-SCHHHHHHHH
T ss_pred hcccchhHHHHHHhHHH--HHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC-CChhhhhHHH
Confidence 876533 2222345566 67778888999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcccccc--chhcchhhhhhhHHHHHHHhcc
Q 012448 234 ELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDS--HMFIDESSAKTVISAIDGRLGF 310 (463)
Q Consensus 234 ell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~--~~~~~~~~~k~~p~~l~~~f~~ 310 (463)
..|..++. ++...+.+.+.|++..|+.++.+ .++-++..+..+.+-+.....- ..++ -.+.+|.+++ +
T Consensus 296 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~--~~~~v~~~A~~aL~nl~a~~~~~~~~v~---~~g~i~~Lv~----l 366 (510)
T 3ul1_B 296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN--PKTNIQKEATWTMSNITAGRQDQIQQVV---NHGLVPFLVG----V 366 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHH---HTTHHHHHHH----H
T ss_pred HHHHHhhcCCHHHHHHHhhccchHHHHHHhcC--CCHHHHHHHHHHHHHHHcCcHHHHHHHH---hcCCHHHHHH----H
Confidence 99999988 77888999999999999998875 4455677777777776652111 1112 1244555555 4
Q ss_pred ccCCChhhhhHHHHHHHhhcC--CHHHHHHHhhcCchhHHHHHHHHHhhccchh-hHhHHhhhHHHhcCCCchhhhhhhh
Q 012448 311 LQSQDSDECESALEALGQIGS--SIQGATLLLLCLPPAARHVIDAAFDRQGHGK-QLAALHGLANIAGKTRSEDKIILNA 387 (463)
Q Consensus 311 ~~~~d~~~~~~A~dtlG~Igs--s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~-k~r~L~al~~Il~~~r~~~~~il~~ 387 (463)
+.+.|..++..|.|+|+++.+ +.+....|.+ .+.+..+++... ..+.. ...+|++|.+|+... + . ..
T Consensus 367 L~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~--~g~i~~L~~LL~--~~d~~i~~~~L~aL~nil~~~--~--~--~~ 436 (510)
T 3ul1_B 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH--CGIIEPLMNLLS--AKDTKIIQVILDAISNIFQAA--E--K--LG 436 (510)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH--TTCHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHH--H--T--TT
T ss_pred HcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH--CCCHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHh--H--h--cc
Confidence 577899999999999999976 6676666655 245555544321 11222 778999999999743 1 0 12
Q ss_pred hHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhc
Q 012448 388 DAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVA 436 (463)
Q Consensus 388 ~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~ 436 (463)
+.+. +..++ +...+ ++.|-.+. -+-++|+-.|+.++..-+.
T Consensus 437 ~~~~-~~~~i-ee~gg------l~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 437 ETEK-LSIMI-EECGG------LDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp CHHH-HHHHH-HHTTH------HHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred chHH-HHHHH-HHcCc------HHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 2333 55455 65444 66777777 7899999999999987654
No 7
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.76 E-value=4.8e-16 Score=159.25 Aligned_cols=357 Identities=12% Similarity=0.097 Sum_probs=267.4
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---chh-h-chHHHHHHhhcCC-CHHHHHHHHHHHHHHHhCCch
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---SLI-P-HYMPFVQVGLTAD-SHSVKRLACKTVTCLLEDSDL 113 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~l~-~-~~~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~~~ 113 (463)
.+|.|+..|++.+ +..+..++..|++++...... ... . .+.+.|...|+++ ++.||..+++.++.+..+.
T Consensus 21 ~l~~l~~~l~s~~--~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-- 96 (450)
T 2jdq_A 21 ITSDMIEMIFSKS--PEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN-- 96 (450)
T ss_dssp -CHHHHHHHHSSC--HHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC--
T ss_pred cHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC--
Confidence 4899999998765 778888999999987532222 222 2 6799999999999 9999999999999999876
Q ss_pred hHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhc-CCchhHHHHHH
Q 012448 114 EASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQ-CSSLGRVRVLS 191 (463)
Q Consensus 114 ~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~-~~~~vR~Rv~e 191 (463)
.. ..+.+.+.++++.++..+.+++..+...|+.+|..++...+.. +.++..+.++ .|.+.+.+ .+..+|..+..
T Consensus 97 -~~-~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~--~L~~~l~~~~~~~v~~~a~~ 172 (450)
T 2jdq_A 97 -SL-QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILP--PLLQLFSKQNRLTMTRNAVW 172 (450)
T ss_dssp -HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH--HHHHHTTSCCCHHHHHHHHH
T ss_pred -HH-HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHH--HHHHHhcCCCCHHHHHHHHH
Confidence 44 5566778899999999999999999999999999999887544 5666778887 77767664 68899999999
Q ss_pred HHHHHHhcC-HHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccch
Q 012448 192 LIVKLFSVS-RSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATET 269 (463)
Q Consensus 192 l~v~ia~~S-~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dp 269 (463)
++.+++..+ +......+ .++++.++.-+.+ +|.-++.+++..|..++. .+...+.+...|++..|+..+.+ .|+
T Consensus 173 ~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~ 248 (450)
T 2jdq_A 173 ALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFV-SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH--NDY 248 (450)
T ss_dssp HHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC--SCH
T ss_pred HHHHHhCCCCCCCCHHHH-HHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC--Cch
Confidence 999999765 32212222 6899999999999 999999999999999999 66788899999999999999974 567
Q ss_pred hhhhhhhhHhhhhccccc-cch-hcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhhcCchh
Q 012448 270 ILRSRAIMISGRLLSKDD-SHM-FIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLLCLPPA 346 (463)
Q Consensus 270 l~r~~aili~g~i~~f~~-~~~-~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~~ 346 (463)
-++..++.+.|.+..... ... +++ .+..|.++ +++.++++.++..|+|+||+|+. +.+..+.+.. .+.
T Consensus 249 ~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~----~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~--~~~ 319 (450)
T 2jdq_A 249 KVVSPALRAVGNIVTGDDIQTQVILN---CSALQSLL----HLLSSPKESIKKEACWTISNITAGNRAQIQTVID--ANI 319 (450)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHT---TTHHHHHH----HHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTH
T ss_pred hHHHHHHHHHHHHhhCChHHHHHHHH---CccHHHHH----HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCC
Confidence 778888888887765211 111 111 13344444 35677889999999999999997 6677666654 245
Q ss_pred HHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHH
Q 012448 347 ARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRL 425 (463)
Q Consensus 347 ~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~ 425 (463)
+..+++...+. ....|..+..+++++..... + + ....++ +. .-+..+..++ .+.+++|.
T Consensus 320 l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~-~---------~-~~~~l~-~~-------~~i~~L~~ll~~~~~~v~~ 379 (450)
T 2jdq_A 320 FPALISILQTA-EFRTRKEAAWAITNATSGGS-A---------E-QIKYLV-EL-------GCIKPLCDLLTVMDSKIVQ 379 (450)
T ss_dssp HHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCC-H---------H-HHHHHH-HH-------TCHHHHHHGGGSSCHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCC-H---------H-HHHHHH-HC-------CCHHHHHHHhcCCCHHHHH
Confidence 55555554431 11227888999999886321 1 1 122222 21 3456677777 78899999
Q ss_pred HHHHHHHHhhcC
Q 012448 426 AGYRMITGLVAR 437 (463)
Q Consensus 426 A~~~~l~~l~~~ 437 (463)
.++..|..++..
T Consensus 380 ~a~~aL~~l~~~ 391 (450)
T 2jdq_A 380 VALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999888864
No 8
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.76 E-value=3.4e-16 Score=166.20 Aligned_cols=358 Identities=12% Similarity=0.116 Sum_probs=268.1
Q ss_pred CChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---c-hhhchHHHHHHhhcCC-CHHHHHHHHHHHHHHHhCCch
Q 012448 39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---S-LIPHYMPFVQVGLTAD-SHSVKRLACKTVTCLLEDSDL 113 (463)
Q Consensus 39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~-l~~~~~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~~~ 113 (463)
.-++.|+..|++++ ++..-.++.-++++++....+ . +.....+.|+..|++. ++.|+.-|+|+|++++.++
T Consensus 57 ~~i~~~v~~l~s~d--~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-- 132 (510)
T 3ul1_B 57 WSVEDIVKGINSNN--LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-- 132 (510)
T ss_dssp CCHHHHHHHHTSSC--HHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC--
T ss_pred hhHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC--
Confidence 45899999999877 777777788999998765432 2 3345799999999755 5899999999999999877
Q ss_pred hHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCC-----chhHH
Q 012448 114 EASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCS-----SLGRV 187 (463)
Q Consensus 114 ~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~-----~~vR~ 187 (463)
.. -.+.+++.|.+|.++.+|.+++..|...|+.+|.+|+.+.+.. +.+...+.++ .|..++...+ ..+++
T Consensus 133 -~e-~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~--~Ll~lL~~~~~~~~~~~~~~ 208 (510)
T 3ul1_B 133 -SE-QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAID--PLLALLAVPDLSTLACGYLR 208 (510)
T ss_dssp -HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH--HHHHHTCSSCGGGSCHHHHH
T ss_pred -HH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChH--HHHHHHHhccchhhhHHHHH
Confidence 66 7889999999999999999999999999999999999988765 5777888887 7775665443 23466
Q ss_pred HHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccc
Q 012448 188 RVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSA 266 (463)
Q Consensus 188 Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~ 266 (463)
.+...+.++++............|+++.+...+.+ +|.-++.+++..|..|+. .+...+.+.+.|++..|++++..
T Consensus 209 ~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~-~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-- 285 (510)
T 3ul1_B 209 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-- 285 (510)
T ss_dssp HHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC--
T ss_pred HHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC--
Confidence 77788888888765555555557899999999999 999999999999999999 66777889999999999999975
Q ss_pred cchhhhhhhhhHhhhhccccccc--hhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhhcC
Q 012448 267 TETILRSRAIMISGRLLSKDDSH--MFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLLCL 343 (463)
Q Consensus 267 ~dpl~r~~aili~g~i~~f~~~~--~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~ 343 (463)
.++-++.+++.+.|.+.....-. .+++ .+.+|. +..++.++++.++..|.|+|++|+. +.+.++.+...
T Consensus 286 ~~~~v~~~al~aL~nl~~~~~~~~~~i~~---~g~l~~----L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~- 357 (510)
T 3ul1_B 286 TELPIVTPALRAIGNIVTGTDEQTQKVID---AGALAV----FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH- 357 (510)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHH---TTGGGG----CC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT-
T ss_pred CChhhhhHHHHHHHHhhcCCHHHHHHHhh---ccchHH----HHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhc-
Confidence 45556788888888887632211 1121 122333 3346788999999999999999987 66667777653
Q ss_pred chhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHH
Q 012448 344 PPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAE 422 (463)
Q Consensus 344 ~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~e 422 (463)
+.+..++..+.. .....|..|.-+++++...... + .+..++ + ..-+..+.+++ .+.++
T Consensus 358 -g~i~~Lv~lL~~-~~~~v~~~Aa~aL~Nl~~~~~~----------~-~~~~L~-~-------~g~i~~L~~LL~~~d~~ 416 (510)
T 3ul1_B 358 -GLVPFLVGVLSK-ADFKTQKEAAWAITNYTSGGTV----------E-QIVYLV-H-------CGIIEPLMNLLSAKDTK 416 (510)
T ss_dssp -THHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCCH----------H-HHHHHH-H-------TTCHHHHHHGGGCSCHH
T ss_pred -CCHHHHHHHHcC-CCHHHHHHHHHHHHHHHccCCH----------H-HHHHHH-H-------CCCHHHHHHHhcCCCHH
Confidence 445544444322 1112277888899988763311 1 122233 2 24466777788 88999
Q ss_pred HHHHHHHHHHHhhc
Q 012448 423 IRLAGYRMITGLVA 436 (463)
Q Consensus 423 lr~A~~~~l~~l~~ 436 (463)
++..++..|..|..
T Consensus 417 i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 417 IIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887764
No 9
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.74 E-value=8.1e-16 Score=162.48 Aligned_cols=360 Identities=11% Similarity=0.087 Sum_probs=272.7
Q ss_pred cCChHHHHHccccCCCCcchHHHHHHHHHHHhcccc-cc---chhhchHHHHHHhhcCCC-HHHHHHHHHHHHHHHhCCc
Q 012448 38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKY-GA---SLIPHYMPFVQVGLTADS-HSVKRLACKTVTCLLEDSD 112 (463)
Q Consensus 38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~-~~---~l~~~~~~~l~~gL~h~~-~~Vr~Lal~~l~~i~~~~~ 112 (463)
...+|.|+..|++.+ +..+..++..|+++++... +. .......+.|+..|.+++ +.||..+++.++++..+.
T Consensus 73 ~~~l~~lv~~L~s~~--~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~- 149 (528)
T 4b8j_A 73 LESLPAMIGGVYSDD--NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT- 149 (528)
T ss_dssp --CHHHHHHHHTSSC--HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-
Confidence 456999999998765 7778888889999976543 21 134467999999999997 999999999999999876
Q ss_pred hhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHh-hcCCchhHHHHH
Q 012448 113 LEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLV-AQCSSLGRVRVL 190 (463)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~-~~~~~~vR~Rv~ 190 (463)
.. ....+++.|.++.++..+.+++..|...|+.+|..|+...+.. ..+...+.++ .|...+ .+.+..+|..++
T Consensus 150 --~~-~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~--~Ll~lL~~~~~~~v~~~a~ 224 (528)
T 4b8j_A 150 --SE-NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALL--PLLAQLNEHTKLSMLRNAT 224 (528)
T ss_dssp --HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHH--HHHHTCCTTCCHHHHHHHH
T ss_pred --HH-HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHH--HHHHHHhcCCCHHHHHHHH
Confidence 55 6778888999999999999999999999999999999876644 5677778887 777566 467889999999
Q ss_pred HHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccch
Q 012448 191 SLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATET 269 (463)
Q Consensus 191 el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dp 269 (463)
.++.+++...+.. ......|+++.++..|.+ +|.-++.+++..|..++. .+...+.+.+.|++..|+..+.+. ++
T Consensus 225 ~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~ 300 (528)
T 4b8j_A 225 WTLSNFCRGKPQP-SFEQTRPALPALARLIHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP--SP 300 (528)
T ss_dssp HHHHHHHCSSSCC-CHHHHTTHHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS--CH
T ss_pred HHHHHHHcCCCCC-cHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC--Ch
Confidence 9999999875332 223347999999999999 999999999999999999 555568899999999999999864 56
Q ss_pred hhhhhhhhHhhhhccccc-cc-hhcchhhhhhhHHHHHHHhccccCC-ChhhhhHHHHHHHhhcC-CHHHHHHHhhcCch
Q 012448 270 ILRSRAIMISGRLLSKDD-SH-MFIDESSAKTVISAIDGRLGFLQSQ-DSDECESALEALGQIGS-SIQGATLLLLCLPP 345 (463)
Q Consensus 270 l~r~~aili~g~i~~f~~-~~-~~~~~~~~k~~p~~l~~~f~~~~~~-d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~ 345 (463)
-++.+++.+.|.+..... .. .+++ .+..|.++. ++.++ ++.++..|+|+||+|+. +.+..+.+.. .+
T Consensus 301 ~v~~~a~~~L~nl~~~~~~~~~~~~~---~~~l~~L~~----lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~--~~ 371 (528)
T 4b8j_A 301 SVLIPALRTVGNIVTGDDAQTQCIID---HQALPCLLS----LLTQNLKKSIKKEACWTISNITAGNKDQIQAVIN--AG 371 (528)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHT---TTHHHHHHH----HHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHH--TT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHH---hhhHHHHHH----HHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHH--CC
Confidence 678888888888876211 11 1121 233555554 34566 89999999999999997 5555555554 24
Q ss_pred hHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHH
Q 012448 346 AARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIR 424 (463)
Q Consensus 346 ~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr 424 (463)
.+..+++.+... ....|..++.+|+++..... + +....++ + ..-+..+..++ .+.++++
T Consensus 372 ~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~-~----------~~~~~l~-~-------~~~i~~L~~lL~~~d~~v~ 431 (528)
T 4b8j_A 372 IIGPLVNLLQTA-EFDIKKEAAWAISNATSGGS-H----------DQIKYLV-S-------EGCIKPLCDLLICPDIRIV 431 (528)
T ss_dssp CHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSC-H----------HHHHHHH-H-------TTCHHHHHHGGGCSCHHHH
T ss_pred CHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCC-H----------HHHHHHH-H-------CCCHHHHHHHHcCCCHHHH
Confidence 556555554432 12238889999999886421 1 1122222 2 24466777888 8999999
Q ss_pred HHHHHHHHHhhcCc
Q 012448 425 LAGYRMITGLVARP 438 (463)
Q Consensus 425 ~A~~~~l~~l~~~~ 438 (463)
..++..|..|+...
T Consensus 432 ~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 432 TVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.74 E-value=2.1e-15 Score=160.63 Aligned_cols=359 Identities=12% Similarity=0.122 Sum_probs=268.4
Q ss_pred cCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---c-hhhchHHHHHHhhc-CCCHHHHHHHHHHHHHHHhCCc
Q 012448 38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---S-LIPHYMPFVQVGLT-ADSHSVKRLACKTVTCLLEDSD 112 (463)
Q Consensus 38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~-l~~~~~~~l~~gL~-h~~~~Vr~Lal~~l~~i~~~~~ 112 (463)
+..++.++..+++++ ++..-.++..++++++....+ . +...+.+.|+..|. +.++.++.-|+|+++.++.++
T Consensus 75 ~~~l~~lv~~l~s~d--~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~- 151 (529)
T 3tpo_A 75 NWSVEDIVKGINSNN--LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT- 151 (529)
T ss_dssp SCCHHHHHHHHTSSC--HHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-
T ss_pred HHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-
Confidence 456899999999877 666667777899988655432 2 33457899999996 556999999999999999887
Q ss_pred hhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCC-----chhH
Q 012448 113 LEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCS-----SLGR 186 (463)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~-----~~vR 186 (463)
.. -.+.+++.|.+|.++.++.+++..+...|+.+|..|+.+.+.. +.+...++++ .|..++...+ ..++
T Consensus 152 --~~-~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~--~Ll~lL~~~~~~~~~~~~~ 226 (529)
T 3tpo_A 152 --SE-QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAID--PLLALLAVPDLSTLACGYL 226 (529)
T ss_dssp --HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH--HHHHTTCSSCGGGSCHHHH
T ss_pred --HH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcH--HHHHHHhccchhHhHHHHH
Confidence 56 7788999999999999999999999999999999999987765 5777888887 7775554433 2345
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhccc
Q 012448 187 VRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNS 265 (463)
Q Consensus 187 ~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~ 265 (463)
..+...+.++++............|+++.+...+.+ +|.-++.+++..|..++. .+...+.+...|++..|++++..
T Consensus 227 ~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~- 304 (529)
T 3tpo_A 227 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA- 304 (529)
T ss_dssp HHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcC-CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC-
Confidence 677788888888776555555667999999999999 999999999999999999 66677888999999999999975
Q ss_pred ccchhhhhhhhhHhhhhccccccc--hhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhhc
Q 012448 266 ATETILRSRAIMISGRLLSKDDSH--MFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLLC 342 (463)
Q Consensus 266 ~~dpl~r~~aili~g~i~~f~~~~--~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~ 342 (463)
.++-++.+++.+.|-+.....-. .++ -.+..|.++. ++.++++.++..|+|+|++|+. +.+..+.+..
T Consensus 305 -~~~~v~~~a~~aL~nl~~~~~~~~~~i~---~~g~l~~L~~----LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~- 375 (529)
T 3tpo_A 305 -TELPIVTPALRAIGNIVTGTDEQTQKVI---DAGALAVFPS----LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN- 375 (529)
T ss_dssp -SCHHHHHHHHHHHHHHTTSCHHHHHHHH---HTTGGGGHHH----HTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH-
T ss_pred -CChhHHHHHHHHHHHHHccchHHHHHHh---hcccHHHHHH----HHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHh-
Confidence 46667788888888887632211 112 1233444443 5678899999999999999998 6666666665
Q ss_pred CchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCH
Q 012448 343 LPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAA 421 (463)
Q Consensus 343 ~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~ 421 (463)
.+.+..++..... .....|..|.-||+++...... + .+..++ + ..-+..+..++ -+.+
T Consensus 376 -~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nl~~~~~~----------~-~~~~l~-~-------~g~i~~L~~LL~~~d~ 434 (529)
T 3tpo_A 376 -HGLVPFLVGVLSK-ADFKTQKAAAWAITNYTSGGTV----------E-QIVYLV-H-------CGIIEPLMNLLSAKDT 434 (529)
T ss_dssp -TTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSCH----------H-HHHHHH-H-------TTCHHHHHHGGGCSCH
T ss_pred -cCcHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCH----------H-HHHHHH-H-------CcCHHHHHHHhcCCCH
Confidence 2445544444322 1112277788899888763311 1 122233 2 23456677788 8899
Q ss_pred HHHHHHHHHHHHhhc
Q 012448 422 EIRLAGYRMITGLVA 436 (463)
Q Consensus 422 elr~A~~~~l~~l~~ 436 (463)
+++..++..|..|..
T Consensus 435 ~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 435 KIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888763
No 11
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.72 E-value=4.2e-15 Score=155.65 Aligned_cols=381 Identities=11% Similarity=0.072 Sum_probs=283.2
Q ss_pred HhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-chh--hchHHHHHHhhcC-CCHHHHHHHHHHHHHHHhCC
Q 012448 36 LDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-SLI--PHYMPFVQVGLTA-DSHSVKRLACKTVTCLLEDS 111 (463)
Q Consensus 36 ~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-~l~--~~~~~~l~~gL~h-~~~~Vr~Lal~~l~~i~~~~ 111 (463)
+...-+|.|+..|++.+ +..++.++.+|..+-...... .+. +...+.|...|.+ +++.+|..+++.+.++..+.
T Consensus 14 ~~~~~i~~Lv~lL~~~~--~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 14 LATRAIPELTKLLNDED--QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp ---CHHHHHHHHHTCSC--HHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhHhhHHHHHHHhCCCC--HHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 34556899999998765 788889999999884322211 122 3578888888875 49999999999999986653
Q ss_pred chhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHH
Q 012448 112 DLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVL 190 (463)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~ 190 (463)
. ..+.+.+.|.++.++..+.+++..+...|+.+|..++...+.. +.+.+.+.++ .|.+.+.+.+..+|..+.
T Consensus 92 ----~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~--~L~~ll~~~~~~~~~~~~ 164 (529)
T 1jdh_A 92 ----E-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ--KMVALLNKTNVKFLAITT 164 (529)
T ss_dssp ----H-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHH--HHHHGGGCCCHHHHHHHH
T ss_pred ----h-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHH--HHHHHHhcCCHHHHHHHH
Confidence 3 4566777899999999999999999999999999999886544 5566778888 888788888888888888
Q ss_pred HHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchh
Q 012448 191 SLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETI 270 (463)
Q Consensus 191 el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl 270 (463)
.++..++..+++.-..+.+.|.++.++.-+++.++.-.+..+..+|..++..+.....+.+.|+++.|++.+.+. ++-
T Consensus 165 ~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~--~~~ 242 (529)
T 1jdh_A 165 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQR 242 (529)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS--CHH
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC--ChH
Confidence 899999999999999999999999999999885677778889999999999999999999999999999999764 554
Q ss_pred hhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCC-HHHHHHHhhcCchhHHH
Q 012448 271 LRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSS-IQGATLLLLCLPPAARH 349 (463)
Q Consensus 271 ~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss-~eGk~~L~~~~~~~~~~ 349 (463)
++..+.-+.+.+.....-... .....|.++ +++.+.|+..+..|.|+|+.++.. .++++.+.+. +.+..
T Consensus 243 ~~~~a~~~L~~l~~~~~~~~~----~~~~i~~L~----~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--~~v~~ 312 (529)
T 1jdh_A 243 LVQNCLWTLRNLSDAATKQEG----MEGLLGTLV----QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV--GGIEA 312 (529)
T ss_dssp HHHHHHHHHHHHHTTCTTCSC----CHHHHHHHH----HHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHT--THHHH
T ss_pred HHHHHHHHHHHHhcCChhhHH----HHhHHHHHH----HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc--CChHH
Confidence 454555444444431111100 123344444 456789999999999999999984 5688877763 46666
Q ss_pred HHHHHHhhccc-hhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCC-HHHHHH
Q 012448 350 VIDAAFDRQGH-GKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQA-AEIRLA 426 (463)
Q Consensus 350 ~l~~~~~~~~~-~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF-~elr~A 426 (463)
+++...+.-.+ ..+..++.+|++|.... + +++. .+..+ .. ...+..+..++ .+. +++|.+
T Consensus 313 L~~ll~~~~~~~~v~~~a~~~L~nl~~~~--~-------~~~~-~~~~i----~~---~~~i~~L~~lL~~~~~~~v~~~ 375 (529)
T 1jdh_A 313 LVRTVLRAGDREDITEPAICALRHLTSRH--Q-------EAEM-AQNAV----RL---HYGLPVVVKLLHPPSHWPLIKA 375 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSS--T-------THHH-HHHHH----HH---TTCHHHHHHTTSTTCCHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHcCC--c-------hHHH-HHHHH----HH---cCChhHHHHHhccccchHHHHH
Confidence 66665543322 23889999999996532 1 1121 22122 11 13366777877 666 699999
Q ss_pred HHHHHHHhhcCchhHHHhhhccchhHhhc
Q 012448 427 GYRMITGLVARPWCLMELCSKQEIINTVT 455 (463)
Q Consensus 427 ~~~~l~~l~~~~Wg~~~i~~~~gfie~ll 455 (463)
+...+..++..+..+..+.. .|++..|+
T Consensus 376 a~~~l~nl~~~~~~~~~~~~-~~~i~~L~ 403 (529)
T 1jdh_A 376 TVGLIRNLALCPANHAPLRE-QGAIPRLV 403 (529)
T ss_dssp HHHHHHHHTTSGGGHHHHHH-TTHHHHHH
T ss_pred HHHHHHHHhcChhhhHHHHH-cCCHHHHH
Confidence 99999999999998877765 45655554
No 12
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.68 E-value=1.7e-15 Score=143.88 Aligned_cols=234 Identities=15% Similarity=0.101 Sum_probs=204.2
Q ss_pred cCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchh
Q 012448 38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLE 114 (463)
Q Consensus 38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~ 114 (463)
..+++.++..|++.+ ++.+..++.+|++++...... .......+.|...|+++++.||..+++.++.+..+.
T Consensus 11 ~~~~~~~~~~L~s~~--~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--- 85 (252)
T 4db8_A 11 GSELPQMTQQLNSDD--MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--- 85 (252)
T ss_dssp TCSHHHHHHHHHSSC--SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC---
T ss_pred cchHHHHHHHHcCCC--HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC---
Confidence 467899999999877 788889999998877642211 233457899999999999999999999999999866
Q ss_pred HHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHHH
Q 012448 115 ASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLI 193 (463)
Q Consensus 115 ~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~ 193 (463)
.. ..+.+.+.|.++.++..+.+++..+...|+.+|..++..++.. +.+...++++ .|.+.+.+.+..+|..++.++
T Consensus 86 ~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~--~L~~lL~~~~~~v~~~a~~~L 162 (252)
T 4db8_A 86 NE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP--ALVQLLSSPNEQILQEALWAL 162 (252)
T ss_dssp HH-HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH--HHHHGGGCSCHHHHHHHHHHH
T ss_pred HH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHH--HHHHHHhCCCHHHHHHHHHHH
Confidence 55 6778888999999999999999999999999999999988766 7788888988 888788888999999999999
Q ss_pred HHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhh
Q 012448 194 VKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILR 272 (463)
Q Consensus 194 v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r 272 (463)
.+++..+++..+.+.+.|.++.++..+++ +|.-++.+++..|..++. .+...+.+.+.|+++.|++.+.+ .||-++
T Consensus 163 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~ 239 (252)
T 4db8_A 163 SNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH--ENEKIQ 239 (252)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHGGGC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC--SSSHHH
T ss_pred HHHHcCChHHHHHHHHCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC--CCHHHH
Confidence 99999999999999999999999999999 899999999999999997 88889999999999999999975 466667
Q ss_pred hhhhhHhhhh
Q 012448 273 SRAIMISGRL 282 (463)
Q Consensus 273 ~~aili~g~i 282 (463)
..+..+.+-+
T Consensus 240 ~~A~~~L~~l 249 (252)
T 4db8_A 240 KEAQEALEKL 249 (252)
T ss_dssp HTHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 13
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.65 E-value=2.2e-13 Score=148.19 Aligned_cols=380 Identities=12% Similarity=0.062 Sum_probs=281.1
Q ss_pred HhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-ch--hhchHHHHHHhhcCC-CHHHHHHHHHHHHHHHhCC
Q 012448 36 LDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-SL--IPHYMPFVQVGLTAD-SHSVKRLACKTVTCLLEDS 111 (463)
Q Consensus 36 ~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-~l--~~~~~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~ 111 (463)
++.--+|.|+..|++.+ +..++.++.+|..+-...... .+ .+...+.|+..|.+. ++.||..++..+..+..+.
T Consensus 11 ~~~g~i~~Lv~lL~~~~--~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~ 88 (644)
T 2z6h_A 11 LATRAIPELTKLLNDED--QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 88 (644)
T ss_dssp -CTTTHHHHHHHHTCSC--HHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhchHHHHHHHHcCCC--HHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Confidence 56677999999998765 788899999999984322211 12 235688999999875 8999999999999876654
Q ss_pred chhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHH
Q 012448 112 DLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVL 190 (463)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~ 190 (463)
. ....+.+.+.++.++.++.+++..+...|+.+|.+++...+.. +.+...+.++ .|.+.+.+.+..++..+.
T Consensus 89 ----~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~--~Lv~lL~~~~~~~~~~a~ 161 (644)
T 2z6h_A 89 ----E-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ--KMVALLNKTNVKFLAITT 161 (644)
T ss_dssp ----H-HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHH--HHHHGGGCCCHHHHHHHH
T ss_pred ----h-hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChH--HHHHHHCcCCHHHHHHHH
Confidence 3 4566777899999999999999999999999999999876544 5666788888 888788888887777778
Q ss_pred HHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchh
Q 012448 191 SLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETI 270 (463)
Q Consensus 191 el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl 270 (463)
.++.+++..+++.-..+.+.|.++.++..+.+.++.-++.+++.+|..|+..+...+++.+.|++..|+..+.+. ++-
T Consensus 162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~--~~~ 239 (644)
T 2z6h_A 162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQR 239 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS--CHH
T ss_pred HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC--CHH
Confidence 899999998899999999999999999999985567778899999999999999999999999999999999764 444
Q ss_pred hhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCC-HHHHHHHhhcCchhHHH
Q 012448 271 LRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSS-IQGATLLLLCLPPAARH 349 (463)
Q Consensus 271 ~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss-~eGk~~L~~~~~~~~~~ 349 (463)
++..++-+.+.+.....-... .....|. +..++.+.|+.++..|.|+|+.++.. .+.++.+.+. +.+..
T Consensus 240 ~~~~a~~~L~nL~~~~~~~~~----~~~~i~~----Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~--g~v~~ 309 (644)
T 2z6h_A 240 LVQNCLWTLRNLSDAATKQEG----MEGLLGT----LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV--GGIEA 309 (644)
T ss_dssp HHHHHHHHHHHHGGGCTTCCS----CHHHHHH----HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHH
T ss_pred HHHHHHHHHHHHhhcchhhhh----hhhHHHH----HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc--CCHHH
Confidence 444455444444331110100 1232344 34456788999999999999999984 5677777763 46666
Q ss_pred HHHHHHhhcc-chhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cC-CHHHHHH
Q 012448 350 VIDAAFDRQG-HGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQ-AAEIRLA 426 (463)
Q Consensus 350 ~l~~~~~~~~-~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qp-F~elr~A 426 (463)
++..+.+.-. ...+..++.+|++|..... + .+. ....+.+ ..-...+..++ .+ -+++|.+
T Consensus 310 Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~-~--------~~~-~q~~v~~-------~~~l~~L~~lL~~~~~~~v~~~ 372 (644)
T 2z6h_A 310 LVRTVLRAGDREDITEPAICALRHLTSRHQ-E--------AEM-AQNAVRL-------HYGLPVVVKLLHPPSHWPLIKA 372 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSST-T--------HHH-HHHHHHH-------TTHHHHHHHTTSTTCCHHHHHH
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHhcCCc-h--------HHH-HHHHHHH-------ccChHHHHHHhCccCchHHHHH
Confidence 6666654332 2338889999999976421 1 111 1111101 13356677777 55 3799999
Q ss_pred HHHHHHHhhcCchhHHHhhhccchhHhh
Q 012448 427 GYRMITGLVARPWCLMELCSKQEIINTV 454 (463)
Q Consensus 427 ~~~~l~~l~~~~Wg~~~i~~~~gfie~l 454 (463)
+...|..|+..+..++.+.. .|.+..|
T Consensus 373 a~~~L~nLa~~~~~~~~i~~-~~~i~~L 399 (644)
T 2z6h_A 373 TVGLIRNLALCPANHAPLRE-QGAIPRL 399 (644)
T ss_dssp HHHHHHHHTTSGGGHHHHHH-TTHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHH-cCCHHHH
Confidence 99999999999888866664 4555444
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.65 E-value=6.2e-15 Score=138.88 Aligned_cols=238 Identities=18% Similarity=0.164 Sum_probs=200.3
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC-C
Q 012448 81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN-G 159 (463)
Q Consensus 81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~-~ 159 (463)
..+.|...|+++++.+|..+++.++.+..+. .. ..+.+.+.|+++.++..+.+++..+...|+.+|..++.+.+ .
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~---~~-~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 78 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGP---AS-AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC---HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC---cH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 3678899999999999999999999999887 55 67788889999999999999999999999999999999855 4
Q ss_pred ccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHH
Q 012448 160 IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYEL 239 (463)
Q Consensus 160 l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eL 239 (463)
.+.++..+.++ .|.+.+.+.+..+|..++.++.+++..+++..+.+.+.|.++.++..+++ +|.-++.+++..|..+
T Consensus 79 ~~~~~~~~~i~--~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 79 IKAIVDAGGVE--VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANI 155 (252)
T ss_dssp HHHHHHTTHHH--HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHH--HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHH
Confidence 46777888888 88878888999999999999999999999999999999999999999999 9999999999999999
Q ss_pred Hh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcccc-ccc-hhcchhhhhhhHHHHHHHhccccCCCh
Q 012448 240 AE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKD-DSH-MFIDESSAKTVISAIDGRLGFLQSQDS 316 (463)
Q Consensus 240 a~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~-~~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~ 316 (463)
+. .+...+.+.+.|+++.|++.+.+ .||-++..++.+.+-+.... +.. .+. -.+.+|.+ .++++++|+
T Consensus 156 ~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~---~~~~i~~L----~~ll~~~~~ 226 (252)
T 4hxt_A 156 ASGPDEAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGPTSAIKAIV---DAGGVEVL----QKLLTSTDS 226 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSBHHHHHHHH---HTTHHHHH----HHGGGCSCH
T ss_pred HcCCHHHHHHHHHCcCHHHHHHHHCC--CCHHHHHHHHHHHHHHHcCCHHHHHHHH---HCCCHHHH----HHHHCCCcH
Confidence 99 66666899999999999999984 56777777777777666521 111 111 12233443 345678899
Q ss_pred hhhhHHHHHHHhhcCCHH
Q 012448 317 DECESALEALGQIGSSIQ 334 (463)
Q Consensus 317 ~~~~~A~dtlG~Igss~e 334 (463)
.++..|+|+|++++....
T Consensus 227 ~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 227 EVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999987443
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.65 E-value=1.2e-14 Score=136.93 Aligned_cols=233 Identities=15% Similarity=0.140 Sum_probs=202.3
Q ss_pred hHHHHHccccCCCCcchHHHHHHHHHHHhcccc-c-cc-hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHH
Q 012448 41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKY-G-AS-LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASC 117 (463)
Q Consensus 41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~-~-~~-l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~ 117 (463)
+|.|+..|++.+ +..+..++.+|..+..... . .. ......+.|...|+++++.||+.+++.++++..+. ..
T Consensus 4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---~~- 77 (252)
T 4hxt_A 4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP---DE- 77 (252)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC---HH-
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC---hH-
Confidence 688999999866 7888888999999854332 1 11 23357899999999999999999999999999876 55
Q ss_pred HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC-CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448 118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN-GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL 196 (463)
Q Consensus 118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i 196 (463)
..+.+.+.+.++.++..+.+++..+...|..+|..++...+ ..+.+...+.++ .|.+.+.+.+..+|..++.++.++
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~--~L~~~l~~~~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVE--VLVKLLTSTDSEVQKEAARALANI 155 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH--HHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH--HHHHHHcCCCHHHHHHHHHHHHHH
Confidence 77788899999999999999999999999999999996655 446777888888 888788889999999999999999
Q ss_pred HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhh
Q 012448 197 FSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRA 275 (463)
Q Consensus 197 a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~a 275 (463)
+..+++..+.+.+.|.++.++..+.+ +|.-+|..++..|..++. .+...+.+.+.|++..|++.+.+ .||-++..+
T Consensus 156 ~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a 232 (252)
T 4hxt_A 156 ASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS--TDSEVQKEA 232 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHH
T ss_pred HcCCHHHHHHHHHCcCHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC--CcHHHHHHH
Confidence 99999999999999999999999999 999999999999999999 88899999999999999999975 566677777
Q ss_pred hhHhhhhcc
Q 012448 276 IMISGRLLS 284 (463)
Q Consensus 276 ili~g~i~~ 284 (463)
..+.+-+..
T Consensus 233 ~~~L~~l~~ 241 (252)
T 4hxt_A 233 QRALENIKS 241 (252)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 777666654
No 16
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.64 E-value=3.7e-13 Score=146.30 Aligned_cols=396 Identities=11% Similarity=0.048 Sum_probs=288.0
Q ss_pred CChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc--ch-hhchHHH
Q 012448 8 DDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA--SL-IPHYMPF 84 (463)
Q Consensus 8 ~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~--~l-~~~~~~~ 84 (463)
+|+..-..+|.-+.+... +++....+.+..-+|.|+..|++.+ +..+..++.+|..+....... .+ .....+.
T Consensus 69 ~~~~~~~~A~~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~ 144 (644)
T 2z6h_A 69 NDVETARCTAGTLHNLSH--HREGLLAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQK 144 (644)
T ss_dssp CCHHHHHHHHHHHHHHTT--SHHHHHHHHTTTHHHHHHHHTTCSS--HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHhc--ChhhHHHHHHcCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHH
Confidence 366666666666665422 3457777888889999999999865 788888899999985443221 12 3567999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCch-HHHHHHHHHHHHHhCCCCCcccc
Q 012448 85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNE-EVATASMDAIKKLAGFPNGIDII 163 (463)
Q Consensus 85 l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~-~va~~A~~~L~~lak~~~~l~~l 163 (463)
|+..|+++++.++..++..+..+...+ .. ..+.+.+.+.++.++..+.+++. .+...|..+|..++..+..-+.+
T Consensus 145 Lv~lL~~~~~~~~~~a~~~L~~La~~~---~~-~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l 220 (644)
T 2z6h_A 145 MVALLNKTNVKFLAITTDCLQILAYGN---QE-SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 220 (644)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHCcCCHHHHHHHHHHHHHHHhcC---cH-HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHH
Confidence 999999999999999999999988655 44 56677888999999999998763 45677899999999877666778
Q ss_pred ccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-h
Q 012448 164 FPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-I 242 (463)
Q Consensus 164 ~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t 242 (463)
+..++++ .|.+.+...+..+|..+..++.++++..+.. + ...++++.++.-+.+ +|.-++.+++..|..|+. .
T Consensus 221 ~~~g~l~--~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~-~--~~~~~i~~Lv~lL~~-~d~~v~~~a~~aL~~L~~~~ 294 (644)
T 2z6h_A 221 VEAGGMQ--ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-E--GMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNN 294 (644)
T ss_dssp HHTTHHH--HHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC-C--SCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCHH--HHHHHHhcCCHHHHHHHHHHHHHHhhcchhh-h--hhhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCC
Confidence 8888888 7887888889999999999999999876542 1 234899999999998 999999999999999999 6
Q ss_pred HHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcccccc---c--hhcchhhhhhhHHHHHHHhccccCC-Ch
Q 012448 243 QHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDS---H--MFIDESSAKTVISAIDGRLGFLQSQ-DS 316 (463)
Q Consensus 243 ~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~---~--~~~~~~~~k~~p~~l~~~f~~~~~~-d~ 316 (463)
+...+.+.+.|++..|+..+....+.+-++.+++.+.+.+.....- . .+. -.+++|.+++ ++.+. +.
T Consensus 295 ~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~---~~~~l~~L~~----lL~~~~~~ 367 (644)
T 2z6h_A 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR---LHYGLPVVVK----LLHPPSHW 367 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH---HTTHHHHHHH----TTSTTCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHH---HccChHHHHH----HhCccCch
Confidence 7889999999999999999987554456788899888888752111 1 111 1344566555 44554 46
Q ss_pred hhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccc-------------------hh--hHhHHhhhHHHhc
Q 012448 317 DECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGH-------------------GK--QLAALHGLANIAG 375 (463)
Q Consensus 317 ~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~-------------------~~--k~r~L~al~~Il~ 375 (463)
.++..|+|+|++|+...+..+.+.. .+.+..+++.....-.. .. +..+..+|.++..
T Consensus 368 ~v~~~a~~~L~nLa~~~~~~~~i~~--~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~ 445 (644)
T 2z6h_A 368 PLIKATVGLIRNLALCPANHAPLRE--QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR 445 (644)
T ss_dssp HHHHHHHHHHHHHTTSGGGHHHHHH--TTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHH--cCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc
Confidence 8999999999999998777666654 34666666554432100 01 3345555555543
Q ss_pred CCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhhhc
Q 012448 376 KTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELCSK 447 (463)
Q Consensus 376 ~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~ 447 (463)
.+ . .+..+ . . ..-+..+..++ .+-+++|.+|...|..++..+=..+.|...
T Consensus 446 ~~--~------------~~~~l-~---~---~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~ 497 (644)
T 2z6h_A 446 DV--H------------NRIVI-R---G---LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAE 497 (644)
T ss_dssp SH--H------------HHHHH-H---H---TTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred CH--H------------HHHHH-H---h---CCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHc
Confidence 21 0 01111 0 1 23456677777 789999999999999998775554444443
No 17
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.62 E-value=7.3e-13 Score=138.54 Aligned_cols=410 Identities=11% Similarity=0.050 Sum_probs=281.7
Q ss_pred ChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccc-c-ch-hhchHHHH
Q 012448 9 DSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG-A-SL-IPHYMPFV 85 (463)
Q Consensus 9 ~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~-~-~l-~~~~~~~l 85 (463)
|+.....+|.-+.+. +.+++....+.+..-+|.|+..|++.+ +..+..++.+|..+...... . .+ .....+.|
T Consensus 73 ~~~~~~~a~~~L~~l--s~~~~~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 148 (529)
T 1jdh_A 73 DVETARCTAGTLHNL--SHHREGLLAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 148 (529)
T ss_dssp CHHHHHHHHHHHHHH--TTSHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHH--HcCchhHHHHHHcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHH
Confidence 566666666666664 223557778888899999999999866 77888888899988543222 1 12 35678999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHH-HHHHHHHHHHHhCCCCCccccc
Q 012448 86 QVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEV-ATASMDAIKKLAGFPNGIDIIF 164 (463)
Q Consensus 86 ~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~v-a~~A~~~L~~lak~~~~l~~l~ 164 (463)
...|.++++.|+..++..+..+...+ +. ..+.+.+.+.++.++..+.+++... ...+..+|..++.++...+.+.
T Consensus 149 ~~ll~~~~~~~~~~~~~~L~~la~~~---~~-~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 224 (529)
T 1jdh_A 149 VALLNKTNVKFLAITTDCLQILAYGN---QE-SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV 224 (529)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhCC---HH-HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 99999999999999999999888755 45 6677788899999999998876554 4457888999998776667778
Q ss_pred cCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hH
Q 012448 165 PADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQ 243 (463)
Q Consensus 165 ~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~ 243 (463)
+.+.++ .|.+.+.+.+..++..+..++.+++...+.. + ...|+++.++.-+.+ +|.-++.+++..|..|+. .+
T Consensus 225 ~~g~~~--~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~--~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~ 298 (529)
T 1jdh_A 225 EAGGMQ--ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-E--GMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNY 298 (529)
T ss_dssp HTTHHH--HHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-S--CCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTTCH
T ss_pred HCCCHH--HHHHHHhCCChHHHHHHHHHHHHHhcCChhh-H--HHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCH
Confidence 888888 7877888889999999999999999876542 1 234889999999988 999999999999999999 57
Q ss_pred HHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcccc-cc--c--hhcchhhhhhhHHHHHHHhccccCCC-hh
Q 012448 244 HSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKD-DS--H--MFIDESSAKTVISAIDGRLGFLQSQD-SD 317 (463)
Q Consensus 244 ~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~-~~--~--~~~~~~~~k~~p~~l~~~f~~~~~~d-~~ 317 (463)
...+.+.+.|+++.|++.+....+++-++.+++.+.+.+.... .. . .+. -.++.|.+++ ++.+++ +.
T Consensus 299 ~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~---~~~~i~~L~~----lL~~~~~~~ 371 (529)
T 1jdh_A 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR---LHYGLPVVVK----LLHPPSHWP 371 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHH---HTTCHHHHHH----TTSTTCCHH
T ss_pred HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHH---HcCChhHHHH----HhccccchH
Confidence 7999999999999999999876665667888888888876521 11 0 111 1244566555 445554 58
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHH--HhcCCCchhhhhhhhhHHHHHHH
Q 012448 318 ECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLAN--IAGKTRSEDKIILNADAEESLRH 395 (463)
Q Consensus 318 ~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~--Il~~~r~~~~~il~~~~e~~l~~ 395 (463)
++..|+|++++++...+..+.+.. .+.+..+++...+.- ...|..+.-++++ +....+ + .++...-.. .+..
T Consensus 372 v~~~a~~~l~nl~~~~~~~~~~~~--~~~i~~L~~ll~~~~-~~v~~~a~~~l~n~~~~~~~~-~-~~i~~~~~~-al~~ 445 (529)
T 1jdh_A 372 LIKATVGLIRNLALCPANHAPLRE--QGAIPRLVQLLVRAH-QDTQRRTSMGGTQQQFVEGVR-M-EEIVEGCTG-ALHI 445 (529)
T ss_dssp HHHHHHHHHHHHTTSGGGHHHHHH--TTHHHHHHHHHHHHH-HHHC-----------CBTTBC-H-HHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHhcChhhhHHHHH--cCCHHHHHHHHHHHh-HHHHHHHhcccCchhhhcccc-H-HHHHHHHHH-HHHH
Confidence 999999999999998777766664 245555555443210 1113333333433 111100 0 011000000 0110
Q ss_pred HHH-----HHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhhhcc
Q 012448 396 LIY-----EVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELCSKQ 448 (463)
Q Consensus 396 ~~y-----e~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~~ 448 (463)
+.. ..... ..-...+..++ .+-+++|.++...|..++..+=+.+.+....
T Consensus 446 L~~~~~~~~~l~~---~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~ 501 (529)
T 1jdh_A 446 LARDVHNRIVIRG---LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEG 501 (529)
T ss_dssp HTTSHHHHHHHHH---TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTT
T ss_pred HhcCchHHHHHhc---cCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 000 00001 13345677777 8899999999999999997765555555543
No 18
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.61 E-value=5e-13 Score=149.17 Aligned_cols=377 Identities=11% Similarity=0.058 Sum_probs=276.0
Q ss_pred cCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc-h--hhchHHHHHHhhcCC-CHHHHHHHHHHHHHHHhCCch
Q 012448 38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS-L--IPHYMPFVQVGLTAD-SHSVKRLACKTVTCLLEDSDL 113 (463)
Q Consensus 38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-l--~~~~~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~~~ 113 (463)
.--+|.|+.+|++.+ +..++.++.+|..+-....... + .+...+.|+..|.+. ++.+|+.+++.+.++..+.
T Consensus 149 ~g~ip~Lv~lL~~~d--~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~-- 224 (780)
T 2z6g_A 149 TRAIPELTKLLNDED--QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-- 224 (780)
T ss_dssp HHHHHHHHHHHHCSC--HHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH--
T ss_pred hCCHHHHHHHHCCCC--HHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--
Confidence 445889999998655 7788888888888843221111 1 235788889999765 9999999999999977654
Q ss_pred hHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHH
Q 012448 114 EASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSL 192 (463)
Q Consensus 114 ~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el 192 (463)
. ....+.+.+.++.++..+.+++..+...|+.+|..|+...+.. +.+...++++ .|.+++.+.+..++..+..+
T Consensus 225 --~-~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~--~Lv~lL~~~~~~v~~~a~~a 299 (780)
T 2z6g_A 225 --E-GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQ--KMVALLNKTNVKFLAITTDC 299 (780)
T ss_dssp --H-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHH--HHHHGGGCCCHHHHHHHHHH
T ss_pred --h-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHH--HHHHHHhcCCHHHHHHHHHH
Confidence 3 3455667799999999999999999999999999999886655 4555778888 78878878888888889999
Q ss_pred HHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhh
Q 012448 193 IVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILR 272 (463)
Q Consensus 193 ~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r 272 (463)
+..++..+++.-..+.+.|.++.++..+++.++.-.+.+++.++..|+..+.....+.+.|++..|+..+.+. ++-++
T Consensus 300 L~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~--~~~~~ 377 (780)
T 2z6g_A 300 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQRLV 377 (780)
T ss_dssp HHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS--CHHHH
T ss_pred HHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCC--chHHH
Confidence 9999988899999999999999999999986666777889999999999888899999999999999999764 44344
Q ss_pred hhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCC-HHHHHHHhhcCchhHHHHH
Q 012448 273 SRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSS-IQGATLLLLCLPPAARHVI 351 (463)
Q Consensus 273 ~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss-~eGk~~L~~~~~~~~~~~l 351 (463)
..+.-+.+.+.... -.+. . ....+|. +.+++.+.|+.++..|+|+|+.|+.. .+.++.+.+ ...+..++
T Consensus 378 ~~a~~~L~~L~~~~--~~~~-~-~~~~i~~----Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~--~g~i~~Lv 447 (780)
T 2z6g_A 378 QNCLWTLRNLSDAA--TKQE-G-MEGLLGT----LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ--VGGIEALV 447 (780)
T ss_dssp HHHHHHHHHHHTTC--TTCS-C-CHHHHHH----HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT--TTHHHHHH
T ss_pred HHHHHHHHHHhccc--hhhh-h-hhhHHHH----HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH--CCCHHHHH
Confidence 44444444333211 1110 0 1222333 44456789999999999999999984 566777765 35677777
Q ss_pred HHHHhhccc-hhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCC-HHHHHHHH
Q 012448 352 DAAFDRQGH-GKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQA-AEIRLAGY 428 (463)
Q Consensus 352 ~~~~~~~~~-~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF-~elr~A~~ 428 (463)
+.+.+.-.. ..+..++.+|++|.... + +++. .+..+.+ ...+..+..++ .+. +++|.++.
T Consensus 448 ~lL~~~~~~~~v~~~Al~aL~nL~~~~--~-------~~~~-~~~~v~~-------~~~l~~L~~lL~~~~~~~v~~~A~ 510 (780)
T 2z6g_A 448 RTVLRAGDREDITEPAICALRHLTSRH--Q-------DAEM-AQNAVRL-------HYGLPVVVKLLHPPSHWPLIKATV 510 (780)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSS--T-------THHH-HHHHHHH-------TTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHhcC--c-------hHHH-HHHHHHH-------cCCHHHHHHHhcCCChHHHHHHHH
Confidence 776654332 34888999999996532 1 1111 1111101 12356677777 565 59999999
Q ss_pred HHHHHhhcCchhHHHhhhccchhHh
Q 012448 429 RMITGLVARPWCLMELCSKQEIINT 453 (463)
Q Consensus 429 ~~l~~l~~~~Wg~~~i~~~~gfie~ 453 (463)
..|..|+..+-.+..+.. .|++..
T Consensus 511 ~aL~nLa~~~~~~~~i~~-~g~i~~ 534 (780)
T 2z6g_A 511 GLIRNLALCPANHAPLRE-QGAIPR 534 (780)
T ss_dssp HHHHHHHSSHHHHHHHHH-TTHHHH
T ss_pred HHHHHHhcCHHHHHHHHH-CCCHHH
Confidence 999999998877765554 344443
No 19
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.60 E-value=4.2e-14 Score=134.23 Aligned_cols=236 Identities=17% Similarity=0.158 Sum_probs=197.7
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC-
Q 012448 80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN- 158 (463)
Q Consensus 80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~- 158 (463)
...+.+...|+++++.+|.-+++.+.+++.+. .. ..+.+.+.++++.++..+.+++..+...|+.+|..++...+
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~---~~-~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG---NE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH---HH-HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---Cc-hHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 35788999999999999999999998887764 44 56778888999999999999999999999999999998655
Q ss_pred CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHH
Q 012448 159 GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYE 238 (463)
Q Consensus 159 ~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~e 238 (463)
..+.++..+.++ .|.+.+.+.+..+|..++.++.+++..++.....+.+.|.++.++..|++ +|.-++.+++..|..
T Consensus 88 ~~~~i~~~g~i~--~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~ 164 (252)
T 4db8_A 88 QIQAVIDAGALP--ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSN 164 (252)
T ss_dssp HHHHHHHTTHHH--HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHH--HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHH
Confidence 346778888888 88878888999999999999999999988887889999999999999999 999999999999999
Q ss_pred HHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccc-cc-hhcchhhhhhhHHHHHHHhccccCCC
Q 012448 239 LAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDD-SH-MFIDESSAKTVISAIDGRLGFLQSQD 315 (463)
Q Consensus 239 La~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~-~~-~~~~~~~~k~~p~~l~~~f~~~~~~d 315 (463)
|+. .+...+.+.+.|+++.|++.+.+. ||-++..++.+.+.+..... .. .++ -.+.+|. +.+++.+.+
T Consensus 165 l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~---~~g~i~~----L~~ll~~~~ 235 (252)
T 4db8_A 165 IASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQAVK---EAGALEK----LEQLQSHEN 235 (252)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTTSCHHHHHHHH---HTTHHHH----HHTTTTCSS
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHH---HCCcHHH----HHHHhCCCC
Confidence 999 778889999999999999999864 77778788877777764211 11 111 1223344 344677889
Q ss_pred hhhhhHHHHHHHhhcC
Q 012448 316 SDECESALEALGQIGS 331 (463)
Q Consensus 316 ~~~~~~A~dtlG~Igs 331 (463)
+.++..|.|+|+++++
T Consensus 236 ~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 236 EKIQKEAQEALEKLQS 251 (252)
T ss_dssp SHHHHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999875
No 20
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.60 E-value=1e-13 Score=145.26 Aligned_cols=361 Identities=12% Similarity=0.032 Sum_probs=254.7
Q ss_pred CChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc--c-hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhH
Q 012448 39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA--S-LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEA 115 (463)
Q Consensus 39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~--~-l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~ 115 (463)
..+|.|+..|++.+ +..+..++..|+.+.....+. . ......+.|+..|.++++.|++.+++++..+..++ +
T Consensus 2 ~~l~~lv~~L~s~~--~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~---~ 76 (457)
T 1xm9_A 2 LTIPKAVQYLSSQD--EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS---T 76 (457)
T ss_dssp CCHHHHHHHHHSSC--THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC---H
T ss_pred CCHHHHHHHHCCCC--HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC---H
Confidence 46899999999876 778888888999984322221 1 23456899999999999999999999999999875 5
Q ss_pred HHHHHHhhccCcHHHHHHhhc-CCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh--------c------
Q 012448 116 SCALQLLIDYEIYPLLLDCLI-NGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA--------Q------ 180 (463)
Q Consensus 116 ~~~~~~~~~~~l~~~li~~l~-d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~--------~------ 180 (463)
. ....+++.|.+|.++..|. .++..+...|+.+|..|+.+++.-..+.. +.++ .|.+++. .
T Consensus 77 ~-~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~--~Lv~ll~~~~s~~~~~~~~~~~ 152 (457)
T 1xm9_A 77 T-NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALP--VLADRVIIPFSGWCDGNSNMSR 152 (457)
T ss_dssp H-HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHH--HHHHHTTHHHHTCC--------
T ss_pred H-HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHH--HHHHHHhccccccccCccchhc
Confidence 5 6778889999999999999 88999999999999999999544455777 8888 7776662 1
Q ss_pred --CCchhHHHHHHHHHHHHhcCHHHHHHHHhh-ccHHHHHhhcCCC-----CcHHHHHhHHHHHHHHHh-----------
Q 012448 181 --CSSLGRVRVLSLIVKLFSVSRSVASVIFKA-NLLTLLEEGVSKK-----NDTLETLSILELLYELAE----------- 241 (463)
Q Consensus 181 --~~~~vR~Rv~el~v~ia~~S~~~~~~v~~s-gl~~~ll~eL~~~-----~DvLv~lnalell~eLa~----------- 241 (463)
.+..++..+.-++.++++. ++..+.+++. |.++.++.-|.++ .|.-++-||+-+|+.|+.
T Consensus 153 e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~ 231 (457)
T 1xm9_A 153 EVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR 231 (457)
T ss_dssp -CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHH
T ss_pred ccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhh
Confidence 3456677999999999988 8999999998 9999999888631 233345577777776642
Q ss_pred ----------------------------------------hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhh
Q 012448 242 ----------------------------------------IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGR 281 (463)
Q Consensus 242 ----------------------------------------t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~ 281 (463)
.++|.+.+.+.|++..|+..+...+ +|.++-.+.-+.+-
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-~~~~~e~a~~aL~n 310 (457)
T 1xm9_A 232 QLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK-KDATLEACAGALQN 310 (457)
T ss_dssp HHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred hcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 1335566677788888888887653 45555555544444
Q ss_pred hccccccc-hhcchh-h--hhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhh
Q 012448 282 LLSKDDSH-MFIDES-S--AKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDR 357 (463)
Q Consensus 282 i~~f~~~~-~~~~~~-~--~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~ 357 (463)
+....+-. ..+.+. . .+++|.+++ ++.+++..++..|.|+|+.+....+.+.++.+. .+..+++.....
T Consensus 311 l~~~~~~~~~~~~~~~v~~~~~l~~Lv~----LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~---~i~~Lv~lL~~~ 383 (457)
T 1xm9_A 311 LTASKGLMSSGMSQLIGLKEKGLPQIAR----LLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQ---VFPEVTRLLTSH 383 (457)
T ss_dssp HTTCSSSHHHHHHHHHHTTSCCHHHHHH----HTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHH---THHHHHHTTTSC
T ss_pred hccCcCcchHHHHHHHHHHcCCchHHHH----HHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHh---hhHHHHHhccCC
Confidence 44311111 011010 1 356777666 567889999999999999999988888888642 455555543322
Q ss_pred ccc---h--hhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cC-CHHHHHHHHHH
Q 012448 358 QGH---G--KQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQ-AAEIRLAGYRM 430 (463)
Q Consensus 358 ~~~---~--~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qp-F~elr~A~~~~ 430 (463)
-.. . ....++.++.+|+... + + ..+.+ ... .-+..+..+. .+ -++++-.|+.+
T Consensus 384 ~~~~~~~~~v~~~~l~~l~ni~~~~--~------~-----~~~~i-~~~------g~l~~L~~L~~~~~~~~i~~~A~~~ 443 (457)
T 1xm9_A 384 TGNTSNSEDILSSACYTVRNLMASQ--P------Q-----LAKQY-FSS------SMLNNIINLCRSSASPKAAEAARLL 443 (457)
T ss_dssp CSCSTTHHHHHHHHHHHHHHHHTTC--T------H-----HHHHH-CCH------HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcC--H------H-----HHHHH-HHc------CCHHHHHHHHcCCCcHHHHHHHHHH
Confidence 110 1 1457888899988643 2 0 11122 111 2245566667 66 89999999999
Q ss_pred HHHhhcC
Q 012448 431 ITGLVAR 437 (463)
Q Consensus 431 l~~l~~~ 437 (463)
|..++.|
T Consensus 444 L~~~~~~ 450 (457)
T 1xm9_A 444 LSDMWSS 450 (457)
T ss_dssp HHTTSSS
T ss_pred HHHHHcc
Confidence 9988765
No 21
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.59 E-value=7.5e-14 Score=129.04 Aligned_cols=200 Identities=16% Similarity=0.123 Sum_probs=173.2
Q ss_pred ccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHH
Q 012448 74 GASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKL 153 (463)
Q Consensus 74 ~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~l 153 (463)
|......+.+.|...|+++++.||..+++.++++..++ .. ..+.+.+.+.++.++.+|.+++..+...|+.+|..+
T Consensus 6 ~~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~---~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 81 (210)
T 4db6_A 6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGG---NE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81 (210)
T ss_dssp -------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC---HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCC---HH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 33444556889999999999999999999999999776 55 677888999999999999999999999999999999
Q ss_pred hCCCCC-ccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhH
Q 012448 154 AGFPNG-IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSI 232 (463)
Q Consensus 154 ak~~~~-l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lna 232 (463)
+...+. .+.+++.+.++ .|.+.+.+.+..+|..++.++.+++..+++..+.+.+.|.++.++..+++ +|.-++.++
T Consensus 82 ~~~~~~~~~~i~~~g~i~--~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a 158 (210)
T 4db6_A 82 ASGGNEQIQAVIDAGALP--ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEA 158 (210)
T ss_dssp TTSCHHHHHHHHHTTCHH--HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHH
T ss_pred hcCCcHHHHHHHHCCCHH--HHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHH
Confidence 976654 36788889988 88888889999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhh
Q 012448 233 LELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRL 282 (463)
Q Consensus 233 lell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i 282 (463)
+..|..++. ++...+.+.+.|+++.|++.+.+ .|+-++..+..+.+.+
T Consensus 159 ~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 159 LWALSNIASGGNEQKQAVKEAGALEKLEQLQSH--ENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHH
Confidence 999999999 48999999999999999999984 5666666666555544
No 22
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.58 E-value=5.4e-13 Score=148.79 Aligned_cols=388 Identities=11% Similarity=0.091 Sum_probs=278.7
Q ss_pred HHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccc---cc-cch----hhchHHHHHHhhcCC--CHHHHHH
Q 012448 30 AAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTK---YG-ASL----IPHYMPFVQVGLTAD--SHSVKRL 99 (463)
Q Consensus 30 ~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~---~~-~~l----~~~~~~~l~~gL~h~--~~~Vr~L 99 (463)
...++++...-.|.|...|++.+ +..+..+..+|.++=..- .+ ..+ .+...+.+.+.|.|+ ++.||+-
T Consensus 321 ~~~R~~I~~~gv~~L~~Ll~s~~--~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~ 398 (810)
T 3now_A 321 KDKAKALCEQGVDILKRLYHSKN--DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRW 398 (810)
T ss_dssp HHHHHTTHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHcCCC--HHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 55667665555699999998765 566777777888883211 11 111 245678899999999 9999999
Q ss_pred HHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC--------------------
Q 012448 100 ACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG-------------------- 159 (463)
Q Consensus 100 al~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~-------------------- 159 (463)
+++.+.++.... .. -.+++.+.|++|.++.++..++..+...|..+|.+|+...+.
T Consensus 399 AveaLayLS~~~---~v-k~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~ 474 (810)
T 3now_A 399 AADGLAYLTLDA---EC-KEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPE 474 (810)
T ss_dssp HHHHHHHHTTSH---HH-HHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCC
T ss_pred HHHHHHHHhCCc---HH-HHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcc
Confidence 999999997755 44 556777899999999999999999999999999999986521
Q ss_pred -------------ccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcH
Q 012448 160 -------------IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDT 226 (463)
Q Consensus 160 -------------l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~Dv 226 (463)
.+.|++.++++ .|..++.+.++.+|..+..++.+|+. +++.-..+++.|.++.++..|.+ .+.
T Consensus 475 ~~~ld~~~~v~~r~~~VveaGaVp--~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s-~~~ 550 (810)
T 3now_A 475 EHELDDVDFINKRITVLANEGITT--ALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALE-GTE 550 (810)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTHHH--HHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHS-SCH
T ss_pred ccccccHHHHHHHHHHHHHCcCHH--HHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcc-CCH
Confidence 14667778888 88878888999999999999999996 56788999999999999999998 778
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHH---HhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccc-c-chhcchhhhhhhH
Q 012448 227 LETLSILELLYELAEIQHSAEFL---SRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDD-S-HMFIDESSAKTVI 301 (463)
Q Consensus 227 Lv~lnalell~eLa~t~~g~~~L---~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~-~-~~~~~~~~~k~~p 301 (463)
-+|.+|+..|..|+.+.....-. ...|++..|++++.. ..+++.+..|+++.+.+...++ . -.++ -..+.|
T Consensus 551 ~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~-~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii---~aG~l~ 626 (810)
T 3now_A 551 KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ-DCTALENFESLMALTNLASMNESVRQRII---KEQGVS 626 (810)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST-TSCHHHHHHHHHHHHHHTTSCHHHHHHHH---HTTHHH
T ss_pred HHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC-CCcHHHHHHHHHHHHHHhcCCHHHHHHHH---HcCCHH
Confidence 88999999999999842221111 124789999999863 3344544567787777776422 1 1223 134566
Q ss_pred HHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchh
Q 012448 302 SAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSED 381 (463)
Q Consensus 302 ~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~ 381 (463)
.+++ ++.++++.++..|+|++++|.++.+....+... .+.+..++... +.-....|..|.-||++|.... +
T Consensus 627 ~Lv~----LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~-~g~l~~Lv~LL-~s~d~~vq~~Aa~ALanLt~~s--~- 697 (810)
T 3now_A 627 KIEY----YLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGN-NDRVKFLALLC-EDEDEETATACAGALAIITSVS--V- 697 (810)
T ss_dssp HHHH----HHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSS-SSHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHC--H-
T ss_pred HHHH----HHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhc-cCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCC--H-
Confidence 6665 345678899999999999999998886655532 34444443332 2211233778889999998732 1
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchh-HHHhhhccchhHhhcCC
Q 012448 382 KIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWC-LMELCSKQEIINTVTDA 457 (463)
Q Consensus 382 ~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg-~~~i~~~~gfie~lldr 457 (463)
. ....++ +. ..-...+..++ .+.+++|..|...+..++...=- .+.|.. .|.++.|.+=
T Consensus 698 -----~----~~~~ii-~~------~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e-~G~i~~L~~L 758 (810)
T 3now_A 698 -----K----CCEKIL-AI------ASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFE-TDIMELLSGL 758 (810)
T ss_dssp -----H----HHHHHH-TS------TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHT-STHHHHHTTS
T ss_pred -----H----HHHHHH-HH------cCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHH
Confidence 1 112222 21 13355677788 88999999999999999875322 344444 5777777664
No 23
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.55 E-value=1.3e-12 Score=145.61 Aligned_cols=414 Identities=12% Similarity=0.042 Sum_probs=301.3
Q ss_pred CCCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-chhhchHHH
Q 012448 6 SMDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-SLIPHYMPF 84 (463)
Q Consensus 6 ~~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-~l~~~~~~~ 84 (463)
...|++-.+++++-+++--...++....-|.+..-+|.|+..+++.+ +...++++.+|..+-+..... .+.....+.
T Consensus 257 ~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~--~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~ 334 (810)
T 3now_A 257 LAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDD--ELQQRVACECLIAASSKKDKAKALCEQGVDI 334 (810)
T ss_dssp SSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSC--HHHHHHHHHHHHHHTTSHHHHHTTHHHHHHH
T ss_pred ccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCcHHHHHHHHcCcHH
Confidence 45677777888877766444445566666778899999999999876 677778888888874433332 355555799
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhc---cCcHHHHHHhhcCC--chHHHHHHHHHHHHHhCCCCC
Q 012448 85 VQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLID---YEIYPLLLDCLING--NEEVATASMDAIKKLAGFPNG 159 (463)
Q Consensus 85 l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~---~~l~~~li~~l~d~--d~~va~~A~~~L~~lak~~~~ 159 (463)
|..-|+..++.+|..+++.+.++....+. +. -.+.+.+ ..+++.++..|.++ |..+.+.|+..|..++..++.
T Consensus 335 L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~-d~-~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v 412 (810)
T 3now_A 335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQ-DA-AIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC 412 (810)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTTTT-TT-SCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhcccccc-Cc-cccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH
Confidence 99999999999999999999998743210 00 0111212 24577888888888 899999999999999988764
Q ss_pred c-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCH-----------------------------HH---HHH
Q 012448 160 I-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSR-----------------------------SV---ASV 206 (463)
Q Consensus 160 l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~-----------------------------~~---~~~ 206 (463)
- +.+.+.++++ .|-.++.+.+..+.+-+..++.+|++.++ .. .+.
T Consensus 413 k~~lv~d~g~Ip--~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~ 490 (810)
T 3now_A 413 KEKLIEDKASIH--ALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITV 490 (810)
T ss_dssp HHHHHHCHHHHH--HHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHccchHH--HHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHH
Confidence 4 3455778888 88878888899999999999999998541 12 268
Q ss_pred HHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcccc
Q 012448 207 IFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKD 286 (463)
Q Consensus 207 v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~ 286 (463)
++++|.++.++..+++ ++.-+|-+|+..|..+|..++..+.+.++|++..|+..+.+. ++-.+..|.-+.+.+...+
T Consensus 491 VveaGaVp~LV~LL~s-~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~--~~~~k~~Aa~AL~nL~~~~ 567 (810)
T 3now_A 491 LANEGITTALCALAKT-ESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG--TEKGKRHATQALARIGITI 567 (810)
T ss_dssp HHHTTHHHHHHHHHTC-CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHS
T ss_pred HHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC--CHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999 999999999999999999888999999999999999999753 4445656666666555422
Q ss_pred c-cchhcchhhhhhhHHHHHHHhccccCC-ChhhhhHHHHHHHhhcCCH-HHHHHHhhcCchhHHHHHHHHHhhccchhh
Q 012448 287 D-SHMFIDESSAKTVISAIDGRLGFLQSQ-DSDECESALEALGQIGSSI-QGATLLLLCLPPAARHVIDAAFDRQGHGKQ 363 (463)
Q Consensus 287 ~-~~~~~~~~~~k~~p~~l~~~f~~~~~~-d~~~~~~A~dtlG~Igss~-eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k 363 (463)
+ -..|..+....+.|++++ ++.+. +...+..|+|+|+++.+.. +.++.+... ..+..++....+. ....|
T Consensus 568 ~p~~~~~~~~~~~aIppLv~----LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~a--G~l~~Lv~LL~s~-~~~Vq 640 (810)
T 3now_A 568 NPEVSFSGQRSLDVIRPLLN----LLQQDCTALENFESLMALTNLASMNESVRQRIIKE--QGVSKIEYYLMED-HLYLT 640 (810)
T ss_dssp CHHHHTTTHHHHHTHHHHHH----TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHHHHSC-CTTHH
T ss_pred ChhhhhcchhhhcHHHHHHH----HhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHc--CCHHHHHHHHcCC-CHHHH
Confidence 2 122211112345777666 34433 2334457999999999964 556666653 4567776666542 22338
Q ss_pred HhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhc-CchhH
Q 012448 364 LAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVA-RPWCL 441 (463)
Q Consensus 364 ~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~-~~Wg~ 441 (463)
..|..++++|...+ + ...++. + +..-+..+..++ .+-+++|.+|-..|..|+. .+-..
T Consensus 641 ~~A~~~L~NLa~~~--~-----------~~~~~v-~------~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~ 700 (810)
T 3now_A 641 RAAAQCLCNLVMSE--D-----------VIKMFE-G------NNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC 700 (810)
T ss_dssp HHHHHHHHHHTTSH--H-----------HHHHHH-S------SSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhCCh--H-----------HHHHHH-h------ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 89999999998742 1 122222 1 124567788888 7789999999999999999 67788
Q ss_pred HHhhhccchhHhhc
Q 012448 442 MELCSKQEIINTVT 455 (463)
Q Consensus 442 ~~i~~~~gfie~ll 455 (463)
+.+....|+++.|.
T Consensus 701 ~~ii~~~g~I~~Lv 714 (810)
T 3now_A 701 EKILAIASWLDILH 714 (810)
T ss_dssp HHHHTSTTHHHHHH
T ss_pred HHHHHHcCCHHHHH
Confidence 88888677777664
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.54 E-value=6.9e-12 Score=139.96 Aligned_cols=395 Identities=11% Similarity=0.050 Sum_probs=279.2
Q ss_pred ChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc--ch-hhchHHHH
Q 012448 9 DSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA--SL-IPHYMPFV 85 (463)
Q Consensus 9 ~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~--~l-~~~~~~~l 85 (463)
|+..-..++.-+.+- +.+++....+.+...+|.|+..|++.+ +..+..++.+|..+....... .+ .....+.|
T Consensus 206 d~~vr~~Aa~aL~~L--s~~~~~~~~i~~~g~I~~Lv~lL~~~~--~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~L 281 (780)
T 2z6g_A 206 DVETARCTSGTLHNL--SHHREGLLAIFKSGGIPALVNMLGSPV--DSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM 281 (780)
T ss_dssp CHHHHHHHHHHHHHH--HTSHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHH--hCCchhHHHHHHcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHH
Confidence 555445555545442 112445667778889999999999875 778888888999885432221 12 34678899
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHH-HHHHHHHHHHhCCCCCccccc
Q 012448 86 QVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVA-TASMDAIKKLAGFPNGIDIIF 164 (463)
Q Consensus 86 ~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va-~~A~~~L~~lak~~~~l~~l~ 164 (463)
...|.++++.|++.++..+..+...+ .. ....+.+.+.++.++..+.+++.... ..|..+|..++..+...+.+.
T Consensus 282 v~lL~~~~~~v~~~a~~aL~~La~~~---~e-~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~ 357 (780)
T 2z6g_A 282 VALLNKTNVKFLAITTDCLQILAYGN---QE-SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV 357 (780)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTC---HH-HHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCC---hH-HHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHH
Confidence 99999999999999999999877644 44 55667788999999999998876544 467888999998765556777
Q ss_pred cCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hH
Q 012448 165 PADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQ 243 (463)
Q Consensus 165 ~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~ 243 (463)
..++++ .|...+.+.+..++..+..++.+++...... ....++++.++..|++ +|.-++.+|+.+|..|+. .+
T Consensus 358 ~~g~l~--~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~-~d~~vr~~A~~aL~~L~~~~~ 431 (780)
T 2z6g_A 358 EAGGMQ--ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNY 431 (780)
T ss_dssp HTTHHH--HHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCH
T ss_pred HhchHH--HHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCH
Confidence 888888 7877888888999999999999999876542 1235789999999998 999999999999999999 56
Q ss_pred HHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccc-ccc--c--hhcchhhhhhhHHHHHHHhccccCCCh-h
Q 012448 244 HSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSK-DDS--H--MFIDESSAKTVISAIDGRLGFLQSQDS-D 317 (463)
Q Consensus 244 ~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f-~~~--~--~~~~~~~~k~~p~~l~~~f~~~~~~d~-~ 317 (463)
...+.+.+.|++..|++.+.+..+.+-++.+++.+.|.+... +.. . .+. -..+.|.+++ ++.+.+. .
T Consensus 432 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~---~~~~l~~L~~----lL~~~~~~~ 504 (780)
T 2z6g_A 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVR---LHYGLPVVVK----LLHPPSHWP 504 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHH---HTTCHHHHHH----TTSTTCCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHH---HcCCHHHHHH----HhcCCChHH
Confidence 788999999999999999987544335677889888888652 111 0 111 1244555554 4455554 8
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccch---------------------hhHhHHhhhHHHhcC
Q 012448 318 ECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHG---------------------KQLAALHGLANIAGK 376 (463)
Q Consensus 318 ~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~---------------------~k~r~L~al~~Il~~ 376 (463)
++..|.|+|++|+...+.+..+... +.+..+++.+...-... .+..+..||.++...
T Consensus 505 v~~~A~~aL~nLa~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~ 582 (780)
T 2z6g_A 505 LIKATVGLIRNLALCPANHAPLREQ--GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD 582 (780)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHHT--THHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHC--CCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC
Confidence 9999999999999988877666652 44555554443211000 133445555554321
Q ss_pred CCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHHHhhcCchhHHHhhhc
Q 012448 377 TRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMITGLVARPWCLMELCSK 447 (463)
Q Consensus 377 ~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~ 447 (463)
+. .+..+ . . ..-+..+..++ .+-+++|.+|...|..++..+=+.+.|...
T Consensus 583 ---~~-----------~~~~l-~---~---~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~ 633 (780)
T 2z6g_A 583 ---IH-----------NRIVI-R---G---LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAE 633 (780)
T ss_dssp ---HH-----------HHHHH-H---H---TCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred ---hh-----------hHHHH-H---H---CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHC
Confidence 10 01111 1 1 23456677788 889999999999999998776555555543
No 25
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.51 E-value=4.8e-13 Score=123.57 Aligned_cols=194 Identities=16% Similarity=0.126 Sum_probs=168.1
Q ss_pred hcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc-----hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCC
Q 012448 37 DRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS-----LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDS 111 (463)
Q Consensus 37 ~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-----l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~ 111 (463)
...+.|.|+..|++.+ +..+..++.+|..+.. .... ......+.|...|+++++.||+.+++.++++..+.
T Consensus 10 ~~~~~~~l~~LL~s~~--~~v~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD--QQELQSALRKLSQIAS--GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp ---CHHHHHHHTTCSC--HHHHHHHHHHHHHHHT--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ccchhHHHHHHhcCCC--HHHHHHHHHHHHHHHc--CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 3457788999998766 7888899999999842 2221 23356899999999999999999999999998766
Q ss_pred chhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHH
Q 012448 112 DLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVL 190 (463)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~ 190 (463)
.. ..+.+.+.|.++.++..+.+++..+...|..+|..++.+.+.. +.+++.+.++ .|.+.+.+.+..+|..++
T Consensus 86 ---~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~--~L~~ll~~~~~~v~~~a~ 159 (210)
T 4db6_A 86 ---NE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP--ALVQLLSSPNEQILQEAL 159 (210)
T ss_dssp ---HH-HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH--HHHHHTTCSCHHHHHHHH
T ss_pred ---cH-HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHH--HHHHHHcCCCHHHHHHHH
Confidence 55 6778889999999999999999999999999999999877644 6778888888 888788888999999999
Q ss_pred HHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 191 SLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 191 el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
.++.+++..+++..+.+.+.|.++.++.-+.+ +|.-+|.+|+..|..|++
T Consensus 160 ~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 160 WALSNIASGGNEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999 999999999999998864
No 26
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.42 E-value=2.2e-11 Score=131.47 Aligned_cols=375 Identities=11% Similarity=0.052 Sum_probs=258.2
Q ss_pred cCChHHHHHccccCCCCcchHHHHHHHHHHHhccc-cc-cc-hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhC-Cch
Q 012448 38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTK-YG-AS-LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLED-SDL 113 (463)
Q Consensus 38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~-~~-~~-l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~-~~~ 113 (463)
...+|.|+..|++.+ +..+..++..|..+-... .. .. ......+.|+..|.++++.|++-|+++++.++.+ +
T Consensus 47 ~~~i~~LV~~L~s~~--~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~-- 122 (584)
T 3l6x_A 47 QPELPEVIAMLGFRL--DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD-- 122 (584)
T ss_dssp CCCHHHHHHHTTCSC--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC--
T ss_pred cccHHHHHHHHCCCC--HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC--
Confidence 345999999999865 666777777887773211 11 11 2334689999999999999999999999999875 3
Q ss_pred hHHHHHHHhhccCcHHHHHHhhcC-CchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh-------------
Q 012448 114 EASCALQLLIDYEIYPLLLDCLIN-GNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA------------- 179 (463)
Q Consensus 114 ~~~~~~~~~~~~~l~~~li~~l~d-~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~------------- 179 (463)
.. ....++++|.++.++..|.. ++.++.+.|..+|..++.+++.-..|+. +.++ .|.+++.
T Consensus 123 -~~-nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp--~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 123 -QD-NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALH--ALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp -HH-HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHH--HHHHHTHHHHHCCC------
T ss_pred -HH-HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHH--HHHHHHhccccccccccccc
Confidence 34 56788899999999999997 6888999999999999987654345554 4565 5554441
Q ss_pred -----cCCchhHHHHHHHHHHHHhcCHHHHHHHHh-hccHHHHHhhcCC-----CCcHHHHHhHHHHHHHHHhh------
Q 012448 180 -----QCSSLGRVRVLSLIVKLFSVSRSVASVIFK-ANLLTLLEEGVSK-----KNDTLETLSILELLYELAEI------ 242 (463)
Q Consensus 180 -----~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~-sgl~~~ll~eL~~-----~~DvLv~lnalell~eLa~t------ 242 (463)
..++.++..+..++-++++.+++.-..+++ .|+++.|+.-+.+ ..|.-.+-||+-.|+.|+..
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~ 277 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIP 277 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHST
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccccc
Confidence 125689999999999999999997777776 5777788776642 14556788888888776642
Q ss_pred --------------------HHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccch-hcchh--hhhh
Q 012448 243 --------------------QHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHM-FIDES--SAKT 299 (463)
Q Consensus 243 --------------------~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~-~~~~~--~~k~ 299 (463)
+.|.+.|.+.+++..|+..+..+. ++-++-.|..+..-+.....-.. .+... -.++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~-~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~g 356 (584)
T 3l6x_A 278 QAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK-TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKA 356 (584)
T ss_dssp TCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHH
T ss_pred chhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCc
Confidence 335556666777888888887654 34455566666555543110110 00000 1355
Q ss_pred hHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhcc-------chhhHhHHhhhHH
Q 012448 300 VISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQG-------HGKQLAALHGLAN 372 (463)
Q Consensus 300 ~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~-------~~~k~r~L~al~~ 372 (463)
+|.+++ ++.++++..+..|.|+|+.+.....-+..+.. ..+..++........ ......++.+|.+
T Consensus 357 lp~Lv~----LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~---g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~N 429 (584)
T 3l6x_A 357 LSAIAD----LLTNEHERVVKAASGALRNLAVDARNKELIGK---HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE 429 (584)
T ss_dssp HHHHHH----GGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHH---HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHH
T ss_pred HHHHHH----HHcCCCHHHHHHHHHHHHHHhCChhHHHHHHh---CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHH
Confidence 666555 67889999999999999999986666666632 355555555433211 1126678888888
Q ss_pred HhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-c--CCHHHHHHHHHHHHHhhcCchhHHHhhhccc
Q 012448 373 IAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-Q--QAAEIRLAGYRMITGLVARPWCLMELCSKQE 449 (463)
Q Consensus 373 Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-q--pF~elr~A~~~~l~~l~~~~Wg~~~i~~~~g 449 (463)
|.... + .+ .+.+.+ ..-+..+..++ . ..+.++-+|-.+|..|+.|.=.+..+.. .|
T Consensus 430 L~a~~--~------~~-----~~~I~~-------~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk-~G 488 (584)
T 3l6x_A 430 VIAEN--L------EA-----AKKLRE-------TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEK-EG 488 (584)
T ss_dssp HHTTC--H------HH-----HHHHHH-------TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHT-TT
T ss_pred HhcCC--H------HH-----HHHHHH-------CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHH-cC
Confidence 88643 2 11 112212 23456666776 4 3899999999999999998877777766 45
Q ss_pred h
Q 012448 450 I 450 (463)
Q Consensus 450 f 450 (463)
|
T Consensus 489 ~ 489 (584)
T 3l6x_A 489 W 489 (584)
T ss_dssp C
T ss_pred C
Confidence 4
No 27
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.42 E-value=3.4e-11 Score=126.09 Aligned_cols=175 Identities=15% Similarity=0.102 Sum_probs=152.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI- 160 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l- 160 (463)
.+.++..|.++++.+|.-+++++.++..++ +. ..+.+.+.|.+|.++.+|.+++..+...|..+|..|+...+..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~---~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k 79 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD---ES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC---SS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC---hH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 577899999999999999999999998766 34 5567788999999999999999999999999999999985544
Q ss_pred cccccCCCcchhhHhhHhh-cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcC--------CC-------C
Q 012448 161 DIIFPADNKAATDLGNLVA-QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVS--------KK-------N 224 (463)
Q Consensus 161 ~~l~~~~~~~~~~L~~~~~-~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~--------~~-------~ 224 (463)
..|...+.++ .|.+++. +.+..+|..+..++.+++.. ++.-..+++ |.++.++..|. +. .
T Consensus 80 ~~i~~~G~i~--~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 80 LETRRQNGIR--EAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHHTTCHH--HHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHHHcCCHH--HHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccc
Confidence 6788999999 8887887 67899999999999999998 667777888 99999999993 21 3
Q ss_pred cHHHHHhHHHHHHHHHhhHHHHHHHHhc-chHHHHHHHhcc
Q 012448 225 DTLETLSILELLYELAEIQHSAEFLSRT-TLLQLLCSLIGN 264 (463)
Q Consensus 225 DvLv~lnalell~eLa~t~~g~~~L~~~-gi~~~L~~~i~~ 264 (463)
|.=++.+|+-.|+.|+..++..+.+.+. |+++.|+.++.+
T Consensus 156 ~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence 6677789999999999998899999998 999999999985
No 28
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.38 E-value=9.1e-12 Score=123.94 Aligned_cols=184 Identities=14% Similarity=0.074 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHhccccccc-h-hhchHHHHHH-hhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHh
Q 012448 58 EDTLVVCLERIFKTKYGAS-L-IPHYMPFVQV-GLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDC 134 (463)
Q Consensus 58 ~~~~~~vL~~il~~~~~~~-l-~~~~~~~l~~-gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~ 134 (463)
+..+...|..+....+.+. + .....+.|+. .|+|+++.||+-|+|.++.++.++ +. ..+.+++.|.++.++.+
T Consensus 57 k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n---~~-~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 57 REGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV---AA-IQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC---HH-HHHHHHHCCCHHHHHHH
Confidence 4444556666655443332 1 1234667777 999999999999999999999987 66 77889999999999999
Q ss_pred hc-CCchHHHHHHHHHHHHHhCCCC-CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhcc
Q 012448 135 LI-NGNEEVATASMDAIKKLAGFPN-GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANL 212 (463)
Q Consensus 135 l~-d~d~~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl 212 (463)
|. +++.++.+.|+.+|+.|+++.+ +.+.+.+.+.++ .|.+.+.+.+..+|.+++-++.+++..+++..+.+++.|.
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~--~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~ 210 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFS--VLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH--HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHH--HHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 99 4689999999999999998765 556788888888 8888888899999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCcHHHHHhHHHHHHHHHhh-HHHHHH
Q 012448 213 LTLLEEGVSKKNDTLETLSILELLYELAEI-QHSAEF 248 (463)
Q Consensus 213 ~~~ll~eL~~~~DvLv~lnalell~eLa~t-~~g~~~ 248 (463)
++.++..|.+ +|.-++-.++..|..++.. +...+.
T Consensus 211 i~~Lv~LL~~-~d~~v~~~al~aL~~l~~~~~~~~~~ 246 (296)
T 1xqr_A 211 VQQLVALVRT-EHSPFHEHVLGALCSLVTDFPQGVRE 246 (296)
T ss_dssp HHHHHHHHTS-CCSTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcC-CChhHHHHHHHHHHHHHhCChhHHHH
Confidence 9999999999 9999999999999999994 554443
No 29
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.36 E-value=5.2e-11 Score=133.06 Aligned_cols=307 Identities=16% Similarity=0.134 Sum_probs=208.2
Q ss_pred HHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 012448 42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQL 121 (463)
Q Consensus 42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~ 121 (463)
+.++.+|.+.+ +..+.+++.++..+.... +..--+.+.+.|..++.++++.+|+.++..++++.++. .. ...-
T Consensus 93 ~~ll~~l~~~~--~~vr~~~a~~i~~ia~~~-~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~---~~-~~~~ 165 (852)
T 4fdd_A 93 SECLNNIGDSS--PLIRATVGILITTIASKG-ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDS---AE-ILDS 165 (852)
T ss_dssp HHHHTTTTCSS--HHHHHHHHHHHHHHHHHT-TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH---TT-HHHH
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHHHHhc-CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh---HH-Hhch
Confidence 56777787655 788999999999996654 33456778999999999999999999999999998754 22 1110
Q ss_pred -h---hccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448 122 -L---IDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL 196 (463)
Q Consensus 122 -~---~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i 196 (463)
. .-..+++.++.++++++..|...|+++|..+.+..++. ...+ +..++ .|.+.+...++.+|..+++++..+
T Consensus 166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~--~l~~~~~d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIE--NLFALAGDEEPEVRKNVCRALVML 242 (852)
T ss_dssp CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHH--HHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHH--HHHHHcCCCCHHHHHHHHHHHHHH
Confidence 0 01247888889999999999999999999887665421 1111 12334 455566678999999999999999
Q ss_pred HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhc--chHHHHHHHhc-----------
Q 012448 197 FSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRT--TLLQLLCSLIG----------- 263 (463)
Q Consensus 197 a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~--gi~~~L~~~i~----------- 263 (463)
++..++.+....+ ++++.++..+.+ +|.-++.+++|.+..+++.+...+++... .++..+...+.
T Consensus 243 ~~~~~~~~~~~l~-~l~~~l~~~~~~-~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~ 320 (852)
T 4fdd_A 243 LEVRMDRLLPHMH-NIVEYMLQRTQD-QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKG 320 (852)
T ss_dssp HHHCHHHHGGGHH-HHHHHHHHHHTC-SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC
T ss_pred HHhCHHHHHHHHH-HHHHHHHHHccC-CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcC
Confidence 9999988765544 689999999999 89999999999999999865444544321 45555555552
Q ss_pred ccccch---------hhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHH
Q 012448 264 NSATET---------ILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQ 334 (463)
Q Consensus 264 ~~~~dp---------l~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~e 334 (463)
+..+|+ -+|.-+..+.+.+... +.+ ...|.++..+.+.+.+++...+.+|++++|.|+....
T Consensus 321 d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~-----~~~----~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~ 391 (852)
T 4fdd_A 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANV-----YRD----ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM 391 (852)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHH-----HGG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH
T ss_pred CcccccccccccccchHHHHHHHHHHHHHHh-----ccH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch
Confidence 211111 1243344444444331 011 1133344444445678899999999999999998554
Q ss_pred HHHHHhhcCchhHHHHHHHHHhhccchh---hHhHHhhhHHHhc
Q 012448 335 GATLLLLCLPPAARHVIDAAFDRQGHGK---QLAALHGLANIAG 375 (463)
Q Consensus 335 Gk~~L~~~~~~~~~~~l~~~~~~~~~~~---k~r~L~al~~Il~ 375 (463)
. .+. +.+..++........+.. |-.+..+++.+..
T Consensus 392 ~--~~~----~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 392 Q--GMI----PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 429 (852)
T ss_dssp H--HHG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred H--HHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 2 222 244555665555555432 6667777777665
No 30
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.27 E-value=8.5e-10 Score=116.05 Aligned_cols=349 Identities=11% Similarity=0.036 Sum_probs=232.8
Q ss_pred CCChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccCCC----------CcchHHHHHHHHHHHhccccccc
Q 012448 7 MDDSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTKPD----------VPGLEDTLVVCLERIFKTKYGAS 76 (463)
Q Consensus 7 ~~~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~~~----------~~~~~~~~~~vL~~il~~~~~~~ 76 (463)
..|...+.+.--.+..-|. .=..+.+..-+|.|+.+|+..+. .++.+..+...|..+-..-....
T Consensus 43 ~~~~~~~~~~ll~~~~~~~-----~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~ 117 (458)
T 3nmz_A 43 THDKDDMSRTLLAMSSSQD-----SCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDK 117 (458)
T ss_dssp --CCHHHHHHHHHHHSSTT-----HHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCH
T ss_pred CCCHHHHHHHHHHHHcCCc-----HHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchh
Confidence 3444444444444444422 22445678889999999996431 25777777778888754331110
Q ss_pred ----------hh---hchHHHHHHhhcCCC--HH-----HHH-------HHHHHHHHHHhCCchhHHHHHHHhhccCcHH
Q 012448 77 ----------LI---PHYMPFVQVGLTADS--HS-----VKR-------LACKTVTCLLEDSDLEASCALQLLIDYEIYP 129 (463)
Q Consensus 77 ----------l~---~~~~~~l~~gL~h~~--~~-----Vr~-------Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~ 129 (463)
+. +.|.+.+.+.+.++. .. |++ -|+|+|+++..+ +. ..+.+.+.|.++
T Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~----~e-~R~~i~~~G~l~ 192 (458)
T 3nmz_A 118 RGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD----EE-HRHAMNELGGLQ 192 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS----HH-HHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC----HH-HHHHHHHCCCHH
Confidence 11 122344566777763 22 777 889999998554 34 667888999999
Q ss_pred HHHHhhc-----------CCchHHHHHHHHHHHHHhCCCCCccccc--cCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448 130 LLLDCLI-----------NGNEEVATASMDAIKKLAGFPNGIDIIF--PADNKAATDLGNLVAQCSSLGRVRVLSLIVKL 196 (463)
Q Consensus 130 ~li~~l~-----------d~d~~va~~A~~~L~~lak~~~~l~~l~--~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i 196 (463)
.++..|. .++.++.+.|..+|..|+...+.....+ ..+.++ .|.+++.+.++.+|..++..+.++
T Consensus 193 ~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp--~LV~LL~s~~~~v~~~A~~aL~nL 270 (458)
T 3nmz_A 193 AIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR--ALVAQLKSESEDLQQVIASVLRNL 270 (458)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH--HHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH--HHHHHHhCCCHHHHHHHHHHHHHH
Confidence 9998884 1346789999999999998876554333 445577 777788888999999999999999
Q ss_pred Hhc-CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHH-hcchHHHHHHHhcccccch--hh
Q 012448 197 FSV-SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLS-RTTLLQLLCSLIGNSATET--IL 271 (463)
Q Consensus 197 a~~-S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~-~~gi~~~L~~~i~~~~~dp--l~ 271 (463)
+.. +++.-+.+++.|.++.++..|..+.|.-++.+++..|..|+. ......-+. ..|++..|++.+......+ -+
T Consensus 271 s~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v 350 (458)
T 3nmz_A 271 SWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAI 350 (458)
T ss_dssp TSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHH
T ss_pred hcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHH
Confidence 985 678889999999999999975443788889999999999999 655554454 8999999999998654331 12
Q ss_pred hhhhhhHhhhhcc----ccc-cchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhhcCch
Q 012448 272 RSRAIMISGRLLS----KDD-SHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLLCLPP 345 (463)
Q Consensus 272 r~~aili~g~i~~----f~~-~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~ 345 (463)
+..+.-+...+.. ..+ .-.++ -..++|.+++ ++.+++..++..|.|+|++++. +.+.++.+... +
T Consensus 351 ~~~A~~aL~nLs~~~a~~~~~~~~i~---~~G~i~~Lv~----LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--G 421 (458)
T 3nmz_A 351 IESGGGILRNVSSLIATNEDHRQILR---ENNCLQTLLQ----HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM--G 421 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHH---HTTHHHHHHH----HSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHH---HcccHHHHHH----HHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHC--C
Confidence 2233333333321 111 11111 1244666555 5678889999999999999994 78888888763 3
Q ss_pred hHHHHHHHHHhhccchhhHhHHhhhHHHhcCC
Q 012448 346 AARHVIDAAFDRQGHGKQLAALHGLANIAGKT 377 (463)
Q Consensus 346 ~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~ 377 (463)
.+..+++.. ..-....|..|..+|.+|+...
T Consensus 422 ~I~~Lv~LL-~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 422 AVSMLKNLI-HSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHTTT-TCSSHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCC
Confidence 333333321 1111122778888999988753
No 31
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.26 E-value=1.8e-09 Score=116.63 Aligned_cols=348 Identities=15% Similarity=0.095 Sum_probs=221.6
Q ss_pred chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhC
Q 012448 76 SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAG 155 (463)
Q Consensus 76 ~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak 155 (463)
.....-.+.|+..|.++++.++.-|++++..+..++ .. ..+.+.+.|.+|.++..|..++..+...|+.+|..|+.
T Consensus 44 ~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~---~~-~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 44 NWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN---DK-VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTS
T ss_pred CcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC---hH-HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 345556899999999999999999999999998766 55 66788899999999999999999999999999999998
Q ss_pred C--CCCccccccCCCcchhhHhhHhhc-CCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhc------------
Q 012448 156 F--PNGIDIIFPADNKAATDLGNLVAQ-CSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGV------------ 220 (463)
Q Consensus 156 ~--~~~l~~l~~~~~~~~~~L~~~~~~-~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL------------ 220 (463)
+ ++.-..|...++++ .|.+++.+ .+..++..+..++.+++.. ++.-..+++ +.++.|+..+
T Consensus 120 ~~~~~nk~~I~~~GaIp--~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~ 195 (584)
T 3l6x_A 120 GRDQDNKIAIKNCDGVP--ALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPN 195 (584)
T ss_dssp SSCHHHHHHHHHTTHHH--HHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----
T ss_pred cCCHHHHHHHHHcCCHH--HHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccc
Confidence 6 33446888999998 88877776 5678899999999999984 555555554 4588888765
Q ss_pred -----CCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhc-chHHHHHHHhccc-----ccchhhhhhhhhHhhhhcccc--
Q 012448 221 -----SKKNDTLETLSILELLYELAE-IQHSAEFLSRT-TLLQLLCSLIGNS-----ATETILRSRAIMISGRLLSKD-- 286 (463)
Q Consensus 221 -----~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~-gi~~~L~~~i~~~-----~~dpl~r~~aili~g~i~~f~-- 286 (463)
.+.+|.-|+.||..+|+.|+. .+++.+.+.+. |+++.|+.++.+. .++.. ...++.+..-+.+.-
T Consensus 196 ~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~-~enav~aL~NLs~~~~~ 274 (584)
T 3l6x_A 196 EDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKL-VENCVCLLRNLSYQVHR 274 (584)
T ss_dssp ------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHH-HHHHHHHHHHHHTTHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHH-HHHHHHHHHHhhccccc
Confidence 123589999999999999999 66788888874 7778999999753 12222 223443321111100
Q ss_pred ---ccchhcch----------hhhhh-----hHHHHHHHhccc-cCCChhhhhHHHHHHHhhcCCH----HH-HHHHhhc
Q 012448 287 ---DSHMFIDE----------SSAKT-----VISAIDGRLGFL-QSQDSDECESALEALGQIGSSI----QG-ATLLLLC 342 (463)
Q Consensus 287 ---~~~~~~~~----------~~~k~-----~p~~l~~~f~~~-~~~d~~~~~~A~dtlG~Igss~----eG-k~~L~~~ 342 (463)
+...|... ...++ .|..+..++.++ .+.++.+++.|+|+|..+++.. +. ...+.+
T Consensus 275 e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~- 353 (584)
T 3l6x_A 275 EIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ- 353 (584)
T ss_dssp HSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS-
T ss_pred cccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH-
Confidence 00000000 00000 122223233334 3567899999999999997632 22 223332
Q ss_pred CchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHhcCCHH
Q 012448 343 LPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVLQQAAE 422 (463)
Q Consensus 343 ~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~qpF~e 422 (463)
...+..+++. ...-....+..+..+|.++....+ ++..++ .. .+.+++ +-.... ...|.. .--+|
T Consensus 354 -~~glp~Lv~L-L~s~~~~v~~~A~~aL~nLs~~~~--~~~~I~--~g-~ip~LV-~LL~~~-~~~~~~------~~s~~ 418 (584)
T 3l6x_A 354 -EKALSAIADL-LTNEHERVVKAASGALRNLAVDAR--NKELIG--KH-AIPNLV-KNLPGG-QQNSSW------NFSED 418 (584)
T ss_dssp -HHHHHHHHHG-GGCSCHHHHHHHHHHHHHHHTTCS--CHHHHH--HH-HHHHHH-HTSSSS-SCSGGG------TCCHH
T ss_pred -cCcHHHHHHH-HcCCCHHHHHHHHHHHHHHhCChh--HHHHHH--hC-CHHHHH-HHhcCC-cccccc------cchHH
Confidence 2233333332 222222227788889999887542 122221 11 122222 111100 000100 00368
Q ss_pred HHHHHHHHHHHhhcC-chhHHHhhhcc
Q 012448 423 IRLAGYRMITGLVAR-PWCLMELCSKQ 448 (463)
Q Consensus 423 lr~A~~~~l~~l~~~-~Wg~~~i~~~~ 448 (463)
+..++.+.|..|+.. +=..+.|....
T Consensus 419 v~~~a~~tL~NL~a~~~~~~~~I~~~g 445 (584)
T 3l6x_A 419 TVISILNTINEVIAENLEAAKKLRETQ 445 (584)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence 888999999888765 44455555443
No 32
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.23 E-value=2.9e-10 Score=115.80 Aligned_cols=263 Identities=13% Similarity=0.075 Sum_probs=202.2
Q ss_pred HHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccC---------CCCcchHHHHHHHHHHHhcccc-cc-ch--
Q 012448 11 NQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTK---------PDVPGLEDTLVVCLERIFKTKY-GA-SL-- 77 (463)
Q Consensus 11 ~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~---------~~~~~~~~~~~~vL~~il~~~~-~~-~l-- 77 (463)
.++-+|+.=+.|--+ .++.=+.+++..-++.|+..|... .+.+..+..++.+|..+-.... .. .+
T Consensus 47 ~~~~~A~~aL~nls~--d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSF--DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHT--SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 355677776666633 355555667889999999999531 1225577788889998832222 11 22
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhh-cCCchHHHHHHHHHHHHHhCC
Q 012448 78 IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCL-INGNEEVATASMDAIKKLAGF 156 (463)
Q Consensus 78 ~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l-~d~d~~va~~A~~~L~~lak~ 156 (463)
.....+.|+.-|.++++.||+-++++++.+..+.+ +. ..+.+.+.|.++.++..| ..++.++.+.|+.+|..|+.+
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~--~~-~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD--VN-SKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCC--HH-HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC--HH-HHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 23458999999999999999999999999987521 33 566788999999999975 567889999999999999986
Q ss_pred CCCc-cccc-cCCCcchhhHhhHhhcCCc----hhHHHHHHHHHHHHh---cCHHHHHHHHhhccHHHHHhhcCCCCcHH
Q 012448 157 PNGI-DIIF-PADNKAATDLGNLVAQCSS----LGRVRVLSLIVKLFS---VSRSVASVIFKANLLTLLEEGVSKKNDTL 227 (463)
Q Consensus 157 ~~~l-~~l~-~~~~~~~~~L~~~~~~~~~----~vR~Rv~el~v~ia~---~S~~~~~~v~~sgl~~~ll~eL~~~~DvL 227 (463)
.++. ..+. ..+.++ .|.+++...++ .++..+.-++.+++. .+++.-+.+.+.|.++.++..|.+ .|.-
T Consensus 202 ~~~nk~~i~~~~Gai~--~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~ 278 (354)
T 3nmw_A 202 CTENKADICAVDGALA--FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLT 278 (354)
T ss_dssp CHHHHHHHHHSTTHHH--HHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC-SCHH
T ss_pred ChhhhHHHHHhcCcHH--HHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC-CChH
Confidence 6443 3444 778888 78867765554 388888999999998 589999999999999999999999 8889
Q ss_pred HHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhc
Q 012448 228 ETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLL 283 (463)
Q Consensus 228 v~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~ 283 (463)
+|.+|+-.|..++. +++..+++.+.|++..|++++.. .++-++..+..+..-+.
T Consensus 279 v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s--~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 279 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS--KHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC--SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHH
Confidence 99999999999996 89999999999999999999865 34434444444444443
No 33
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.16 E-value=3.9e-10 Score=112.13 Aligned_cols=189 Identities=14% Similarity=0.073 Sum_probs=158.9
Q ss_pred ChHHHHHHhhhhccCCCCCChHHHHHHHhcCChHHHHH-ccccCCCCcchHHHHHHHHHHHhccccccc-----hhhchH
Q 012448 9 DSNQLLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILN-TLQTKPDVPGLEDTLVVCLERIFKTKYGAS-----LIPHYM 82 (463)
Q Consensus 9 ~~~~~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~-~L~~~~~~~~~~~~~~~vL~~il~~~~~~~-----l~~~~~ 82 (463)
+.+.-..++..|+++ ..+.+.+.+|+....+|.|+. +|++.+ +..++.++.+|..+-+ ..+. +.....
T Consensus 53 ~~e~k~~Al~~L~~l--v~~~dna~~~~~~G~l~~Lv~~lL~s~~--~~vr~~Aa~~Lg~ia~--~n~~~~~~vv~~g~l 126 (296)
T 1xqr_A 53 DQQEREGALELLADL--CENMDNAADFCQLSGMHLLVGRYLEAGA--AGLRWRAAQLIGTCSQ--NVAAIQEQVLGLGAL 126 (296)
T ss_dssp HHHHHHHHHHHHHHH--HTSHHHHHHHHHTTHHHHHHHTTTTCSS--HHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHH--HhChhhHHHHHHcCCHHHHHHHHHcCCC--HHHHHHHHHHHHHHHh--CCHHHHHHHHHCCCH
Confidence 345666777777777 334578999999999999999 999866 8899999999999943 3322 233568
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-
Q 012448 83 PFVQVGLTA-DSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI- 160 (463)
Q Consensus 83 ~~l~~gL~h-~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l- 160 (463)
+.|...|++ +++.||+-++|+|+.++++. .. ..+.+.+.+.++.++.+|.+++..+.+.|..+|+.++...+..
T Consensus 127 ~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~---~~-~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~ 202 (296)
T 1xqr_A 127 RKLLRLLDRDACDTVRVKALFAISCLVREQ---EA-GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 202 (296)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHcCC---cH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHH
Confidence 899999995 68999999999999999987 55 6778888999999999999999999999999999998876654
Q ss_pred cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHh
Q 012448 161 DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFK 209 (463)
Q Consensus 161 ~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~ 209 (463)
+.+++.++++ .|..++.+.+..+|..++..+.+|++..+.....|..
T Consensus 203 ~~vv~~g~i~--~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~ 249 (296)
T 1xqr_A 203 GTLCSMGMVQ--QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE 249 (296)
T ss_dssp HHHHHTTHHH--HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred HHHHHcCCHH--HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhc
Confidence 7888999998 8888888999999999999999999998877776653
No 34
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.15 E-value=1.9e-09 Score=116.33 Aligned_cols=256 Identities=14% Similarity=0.137 Sum_probs=176.1
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL 119 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~ 119 (463)
..+.|...|++.| +.++..+...|..+ ...++.+.+.+.+..+|.|++|.||.-|+.+++++.+.. ..
T Consensus 87 ~~n~l~kdL~~~n--~~ir~~AL~~L~~i----~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~---p~--- 154 (591)
T 2vgl_B 87 AVNSFVKDCEDPN--PLIRALAVRTMGCI----RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN---AQ--- 154 (591)
T ss_dssp THHHHGGGSSSSS--HHHHHHHHHHHHTC----CSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS---CC---
T ss_pred HHHHHHHHcCCCC--HHHHHHHHHHHHcC----ChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC---hh---
Confidence 4456666677655 66665554444444 466778888899999999999999999999999998865 22
Q ss_pred HHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448 120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS 198 (463)
Q Consensus 120 ~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~ 198 (463)
.+.++++++.+..+|.|++..|...|+.+|.+++++.++. ..-+.++.+. .|-+.+..+++-.+++++.++..++.
T Consensus 155 -~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~--~Ll~~l~~~~~~~q~~il~~l~~l~~ 231 (591)
T 2vgl_B 155 -MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNIN--KLLTALNECTEWGQIFILDCLSNYNP 231 (591)
T ss_dssp -CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHH--HHHHHHHHCCHHHHHHHHHHHHTSCC
T ss_pred -hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHH--HHHHcCCCCCchHHHHHHHHHHHhCC
Confidence 2234578899999999999999999999999999887643 1112223343 45546667899999999999988887
Q ss_pred cCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh----hHHHHHHHHhcchHHHHHHHhcccccchhhhhh
Q 012448 199 VSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE----IQHSAEFLSRTTLLQLLCSLIGNSATETILRSR 274 (463)
Q Consensus 199 ~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~----t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ 274 (463)
.+++.. ..+++.+...+.+ .|.-|+..|+.++..++. .+++.+-+. ..+...|+... + .||-+|..
T Consensus 232 ~~~~~~-----~~~l~~l~~~l~~-~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~-~--~d~~vr~~ 301 (591)
T 2vgl_B 232 KDDREA-----QSICERVTPRLSH-ANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLL-S--GEPEVQYV 301 (591)
T ss_dssp CSHHHH-----HHHHHHHTTCSCS-STTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHT-T--SCHHHHHH
T ss_pred CChHHH-----HHHHHHHHHHHcC-CChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHh-c--CCccHHHH
Confidence 766543 3578888999999 889999999999999874 334444322 33345555443 2 67777766
Q ss_pred hhhHhhhhccc-cccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCC
Q 012448 275 AIMISGRLLSK-DDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSS 332 (463)
Q Consensus 275 aili~g~i~~f-~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss 332 (463)
++...+.+... .+++ .. .+..+| ...+.+..++.-|+|+|+.++..
T Consensus 302 aL~~l~~i~~~~p~~~-------~~----~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~ 348 (591)
T 2vgl_B 302 ALRNINLIVQKRPEIL-------KQ----EIKVFF-VKYNDPIYVKLEKLDIMIRLASQ 348 (591)
T ss_dssp HHHHHHHHHHHCCSTT-------TT----CTTTTS-CCTTSCHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHhChHHH-------HH----HHHhhe-eccCChHHHHHHHHHHHHHHCCh
Confidence 66666665541 1111 00 011111 12233467777777777777753
No 35
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.14 E-value=8.7e-10 Score=115.98 Aligned_cols=257 Identities=13% Similarity=0.066 Sum_probs=196.2
Q ss_pred HHHHhhhhccCCCCCChHHHHHHHhcCChHHHHHccccC---------CCCcchHHHHHHHHHHHhcccccc--ch--hh
Q 012448 13 LLDSASDFAYHPGVQNDAAAKKFLDRFPLSVILNTLQTK---------PDVPGLEDTLVVCLERIFKTKYGA--SL--IP 79 (463)
Q Consensus 13 ~~~~~~~~a~~p~~~s~~~~~~~~~~~~l~~L~~~L~~~---------~~~~~~~~~~~~vL~~il~~~~~~--~l--~~ 79 (463)
.-||+.=+.|- +.+++.=..+++.--++.|+..|... .+.+..+..++.+|..+-...... .+ ..
T Consensus 165 ~~qAv~aL~nl--s~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~ 242 (458)
T 3nmz_A 165 ICPAVCVLMKL--SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 242 (458)
T ss_dssp THHHHHHHHHH--TTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCH
T ss_pred HHHHHHHHHHh--cCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcC
Confidence 34555556665 11344555566888899999999521 122556777888888874322211 23 23
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhh-cCCchHHHHHHHHHHHHHhCCCC
Q 012448 80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCL-INGNEEVATASMDAIKKLAGFPN 158 (463)
Q Consensus 80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l-~d~d~~va~~A~~~L~~lak~~~ 158 (463)
...+.|+.-|.++++.|++-++|+|+++..+.+ .. ..+.+.+.|.++.++..| ..++..+.+.|+.+|..|+.+.+
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~--~~-~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~ 319 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRAD--VN-SKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 319 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCC--HH-HHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC--HH-HHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH
Confidence 458999999999999999999999999987521 34 567788999999999975 55788999999999999998554
Q ss_pred Cc-cccc-cCCCcchhhHhhHhhcCCch----hHHHHHHHHHHHHh---cCHHHHHHHHhhccHHHHHhhcCCCCcHHHH
Q 012448 159 GI-DIIF-PADNKAATDLGNLVAQCSSL----GRVRVLSLIVKLFS---VSRSVASVIFKANLLTLLEEGVSKKNDTLET 229 (463)
Q Consensus 159 ~l-~~l~-~~~~~~~~~L~~~~~~~~~~----vR~Rv~el~v~ia~---~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~ 229 (463)
+. ..+. ..+.++ .|.+++...++. ++..+.-++.+|+. .+++.-+.+.+.|.++.++..|.+ .+.-++
T Consensus 320 ~nk~~I~~~~Gal~--~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~-~~~~v~ 396 (458)
T 3nmz_A 320 ENKADICAVDGALA--FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLTIV 396 (458)
T ss_dssp HHHHHHHHSTTHHH--HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC-SCHHHH
T ss_pred HHHHHHHHhcCcHH--HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC-CChHHH
Confidence 33 3444 778888 788677666553 88899999999998 589999999999999999999999 888899
Q ss_pred HhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHh
Q 012448 230 LSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMIS 279 (463)
Q Consensus 230 lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~ 279 (463)
.+|+-.|..++. +++..+++.+.|++..|++++.. .++-++..|..+.
T Consensus 397 ~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s--~~~~v~~~Aa~AL 445 (458)
T 3nmz_A 397 SNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS--KHKMIAMGSAAAL 445 (458)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC--SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 999999999995 89999999999999999999864 3444443444333
No 36
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.13 E-value=7.5e-09 Score=108.97 Aligned_cols=352 Identities=13% Similarity=0.110 Sum_probs=201.7
Q ss_pred cchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHh
Q 012448 55 PGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDC 134 (463)
Q Consensus 55 ~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~ 134 (463)
+..++.++..|.++.....+..+.+.+.+.+....+++++.+|..++..++.+..+.. . . ....+++.+...
T Consensus 101 ~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~---~-~----~~~~l~~~l~~l 172 (588)
T 1b3u_A 101 TVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS---S-A----VKAELRQYFRNL 172 (588)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC---H-H----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC---H-H----HHHHHHHHHHHH
Confidence 4455555555555544433333333344555554555555556555555555554431 1 0 013577888888
Q ss_pred hcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHH
Q 012448 135 LINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLT 214 (463)
Q Consensus 135 l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~ 214 (463)
+.|++..|...|+.+|..+++..++ + .+.+..++ .|...+...++.+|..+.+.+..++...++- -....+++
T Consensus 173 ~~d~~~~VR~~a~~~l~~l~~~~~~-~-~~~~~l~~--~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~ 245 (588)
T 1b3u_A 173 CSDDTPMVRRAAASKLGEFAKVLEL-D-NVKSEIIP--MFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMP 245 (588)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHTSCH-H-HHHHTHHH--HHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhcH-H-hHHHHHHH--HHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHH
Confidence 8999999999999999999876542 1 12234555 6665677788999999999999998764321 12235778
Q ss_pred HHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccc-cccchhcc
Q 012448 215 LLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSK-DDSHMFID 293 (463)
Q Consensus 215 ~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f-~~~~~~~~ 293 (463)
.+...+++ +|.-+|..+++.+..++..-..-. ....++..+...+.+ .+|.+|.-+....|.+... +.-..
T Consensus 246 ~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~~--- 317 (588)
T 1b3u_A 246 TLRQAAED-KSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKD--CEAEVRAAASHKVKEFCENLSADCR--- 317 (588)
T ss_dssp HHHHHHTC-SSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHTSCTTTH---
T ss_pred HHHHHccC-CCHHHHHHHHHHHHHHHHHhCccc--chhHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHhChhhh---
Confidence 88888888 999999999999999998422111 234567777777764 5677776555555544431 11100
Q ss_pred hhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHH
Q 012448 294 ESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANI 373 (463)
Q Consensus 294 ~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~I 373 (463)
.....+.++..+.+.+++++...+.+|+++||.++........+.. ... .+......-...-|..++.+++.+
T Consensus 318 --~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~----l~p-~l~~~l~d~~~~Vr~~a~~~l~~l 390 (588)
T 1b3u_A 318 --ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH----LLP-LFLAQLKDECPEVRLNIISNLDCV 390 (588)
T ss_dssp --HHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHH----THH-HHHHHHTCSCHHHHHHHHTTCHHH
T ss_pred --hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHH----HHH-HHHHHhCCCchHHHHHHHHHHHHH
Confidence 0011222333333456788899999999999999864432222111 111 111222111112277777777777
Q ss_pred hcCCCchh--hhh-------hhhhHHHHHHHHHH---HHHhhCCCC-----ChhHHHHHHh-cCCHHHHHHHHHHHHHhh
Q 012448 374 AGKTRSED--KII-------LNADAEESLRHLIY---EVASRSSKL-----TPSGLFLSVL-QQAAEIRLAGYRMITGLV 435 (463)
Q Consensus 374 l~~~r~~~--~~i-------l~~~~e~~l~~~~y---e~~~~~~~~-----~p~~~~~~~~-qpF~elr~A~~~~l~~l~ 435 (463)
...-+.+. +.+ +++... +.+...+ ..+...++. .-+..++... .+.+++|.++...+..++
T Consensus 391 ~~~~~~~~~~~~~lp~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 469 (588)
T 1b3u_A 391 NEVIGIRQLSQSLLPAIVELAEDAKW-RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV 469 (588)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHTCSSH-HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 65321110 000 001000 1111111 112121111 1234456666 788999999999999999
Q ss_pred cC
Q 012448 436 AR 437 (463)
Q Consensus 436 ~~ 437 (463)
..
T Consensus 470 ~~ 471 (588)
T 1b3u_A 470 EK 471 (588)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 37
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.12 E-value=9.9e-10 Score=112.13 Aligned_cols=310 Identities=15% Similarity=0.103 Sum_probs=199.5
Q ss_pred HHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCC--CHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 012448 43 VILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTAD--SHSVKRLACKTVTCLLEDSDLEASCALQ 120 (463)
Q Consensus 43 ~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~--~~~Vr~Lal~~l~~i~~~~~~~~~~~~~ 120 (463)
.|+..|.+.+ +.. .+++.++..+.....|..-.+.+.+.|..++.++ ++.+|+.++..++.+.++... . ...
T Consensus 94 ~ll~~l~~~~--~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~-~~~ 167 (462)
T 1ibr_B 94 YVLQTLGTET--YRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--E-QLQ 167 (462)
T ss_dssp HHHHHTTCCC--SSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCG--G-GTG
T ss_pred HHHHHhCCCC--chh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCc--h-hhH
Confidence 4677777654 566 8888888888655444334578899999999999 999999999999999875311 1 111
Q ss_pred HhhccCcHHHHHHhhcCC--chHHHHHHHHHHHHHhCCCC-Ccc-ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448 121 LLIDYEIYPLLLDCLING--NEEVATASMDAIKKLAGFPN-GID-IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL 196 (463)
Q Consensus 121 ~~~~~~l~~~li~~l~d~--d~~va~~A~~~L~~lak~~~-~l~-~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i 196 (463)
... ..+++.++.++.++ +..|...|++++..+...-. ..+ ..+...+++ .|.+.+...+..+|..+++++..+
T Consensus 168 ~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~~~~~~vr~~~~~~l~~l 244 (462)
T 1ibr_B 168 DKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ--VVCEATQCPDTRVRVAALQNLVKI 244 (462)
T ss_dssp GGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHH--HHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH--HHHHhcCCCCHHHHHHHHHHHHHH
Confidence 111 24888999999999 68999999999998764321 000 000011122 344455667889999999999999
Q ss_pred HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHh---------------------cchH
Q 012448 197 FSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSR---------------------TTLL 255 (463)
Q Consensus 197 a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~---------------------~gi~ 255 (463)
+...++.+......++++.++..+++ .|.-++..+++.+..+++.........+ ..++
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (462)
T 1ibr_B 245 MSLYYQYMETYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 323 (462)
T ss_dssp HHHCGGGCTTTTTTTHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhcc
Confidence 99887765443333788888888888 8888999999999999985422221111 2355
Q ss_pred HHHHHHhcccc-----cchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhc
Q 012448 256 QLLCSLIGNSA-----TETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIG 330 (463)
Q Consensus 256 ~~L~~~i~~~~-----~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Ig 330 (463)
..|...+.+.+ .++-.|.-+....+.+... +. + ...|.++..+.+.+.+++...+.+|+.++|.|+
T Consensus 324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~-----~~-~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~ 394 (462)
T 1ibr_B 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC-----CE-D---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (462)
T ss_dssp HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHH-----TT-T---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHHHHHHh-----cc-H---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 55666665432 2233343344444443321 01 1 113334444444667889999999999999999
Q ss_pred CCHHHHHHHhhcCchhHHHHHHHHHhhccch-h--hHhHHhhhHHHhcC
Q 012448 331 SSIQGATLLLLCLPPAARHVIDAAFDRQGHG-K--QLAALHGLANIAGK 376 (463)
Q Consensus 331 ss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~-~--k~r~L~al~~Il~~ 376 (463)
..... ..+ .+.+..++..+.....+. + |.+|..+++.+...
T Consensus 395 ~~~~~-~~~----~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 395 EGPEP-SQL----KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp SSSCT-TTT----CTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cCCcH-HHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 74321 111 122344555555544432 2 77888888888764
No 38
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.12 E-value=2.4e-09 Score=109.02 Aligned_cols=271 Identities=11% Similarity=0.016 Sum_probs=195.8
Q ss_pred hcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC-----------CchHHHHHHHHHHHHHhCCC
Q 012448 89 LTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN-----------GNEEVATASMDAIKKLAGFP 157 (463)
Q Consensus 89 L~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d-----------~d~~va~~A~~~L~~lak~~ 157 (463)
.-.|+...+..|+|+|+++..+. . ..+.+++.|.++.++..|.. .+.++.+.|+.+|..|+...
T Consensus 41 ~~~~~~~~~~~A~~aL~nls~d~----e-~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~ 115 (354)
T 3nmw_A 41 MPAPVEHQICPAVCVLMKLSFDE----E-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD 115 (354)
T ss_dssp CCCGGGGTHHHHHHHHHHHHTSH----H-HHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSC
T ss_pred CCCcchHHHHHHHHHHHHHcCCH----H-HHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCC
Confidence 44555677888999999998753 3 67788999999999988842 24678999999999999887
Q ss_pred CCccccc--cCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhc-CHHHHHHHHhhccHHHHHhhc-CCCCcHHHHHhHH
Q 012448 158 NGIDIIF--PADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSV-SRSVASVIFKANLLTLLEEGV-SKKNDTLETLSIL 233 (463)
Q Consensus 158 ~~l~~l~--~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~-S~~~~~~v~~sgl~~~ll~eL-~~~~DvLv~lnal 233 (463)
+.....+ ..+.++ .|.+++.+.++.+|..+...+.+++.. +++.-+.+++.|.++.++..| .+ .|.-++.+++
T Consensus 116 ~~~k~~i~~~~GaIp--~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~-~~~~~~~~A~ 192 (354)
T 3nmw_A 116 VANKATLCSMKGCMR--ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV-KKESTLKSVL 192 (354)
T ss_dssp HHHHHHHHHCHHHHH--HHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC-CCHHHHHHHH
T ss_pred HHHHHHHHHcCCcHH--HHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC-CCHHHHHHHH
Confidence 6554333 445577 788788888999999999999999986 688889999999999999975 55 7888899999
Q ss_pred HHHHHHHh-hHHHHHHHH-hcchHHHHHHHhcccccch--hhhhhhhhHhhhhcc----ccc-cchhcchhhhhhhHHHH
Q 012448 234 ELLYELAE-IQHSAEFLS-RTTLLQLLCSLIGNSATET--ILRSRAIMISGRLLS----KDD-SHMFIDESSAKTVISAI 304 (463)
Q Consensus 234 ell~eLa~-t~~g~~~L~-~~gi~~~L~~~i~~~~~dp--l~r~~aili~g~i~~----f~~-~~~~~~~~~~k~~p~~l 304 (463)
..|..|+. ......-+. ..|++..|++.+......+ -++..+.-+...+.. ..+ .-.+. -..++|.++
T Consensus 193 ~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~---~~g~i~~Lv 269 (354)
T 3nmw_A 193 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR---ENNCLQTLL 269 (354)
T ss_dssp HHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH---TTTHHHHHH
T ss_pred HHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH---HcCCHHHHH
Confidence 99999999 656555555 7999999999997654321 123233333333332 111 11112 124466666
Q ss_pred HHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCC
Q 012448 305 DGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKT 377 (463)
Q Consensus 305 ~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~ 377 (463)
+ ++.+++..++..|.|+|++++. +.+.++.+... +.+..+++.. ..-....|..|..+|.+|+...
T Consensus 270 ~----lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--G~i~~Lv~LL-~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 270 Q----HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM--GAVSMLKNLI-HSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp H----HTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHT--THHHHHHTTT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred H----HHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHC--CCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCC
Confidence 5 4577889999999999999995 78888888763 3444443322 1111122788899999999864
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.11 E-value=3.1e-09 Score=111.87 Aligned_cols=339 Identities=13% Similarity=0.084 Sum_probs=210.0
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL 119 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~ 119 (463)
.+|.+...+++.+ +..++.++.+|..+.....+....+.+.+.+...+++++..||..++..++.+....+. . .
T Consensus 204 l~~~l~~~~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~-~- 277 (588)
T 1b3u_A 204 IIPMFSNLASDEQ--DSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--E-I- 277 (588)
T ss_dssp HHHHHHHHHTCSC--HHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--H-H-
T ss_pred HHHHHHHHhcCCc--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--c-c-
Confidence 3566666665543 56666777777776554444445556777788888888888888888888887653311 1 1
Q ss_pred HHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc--cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448 120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI--DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF 197 (463)
Q Consensus 120 ~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l--~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia 197 (463)
....+++.++..+.|++..|...|..+|..+++..+.- ...+-+..++ .+.+.+...+..+|..++..+..++
T Consensus 278 ---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p--~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 278 ---TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILP--CIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp ---HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHH--HHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred ---chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHH--HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 12367899999999999999999999999998764321 0012234455 6666777888999999998888887
Q ss_pred hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhh
Q 012448 198 SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIM 277 (463)
Q Consensus 198 ~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ail 277 (463)
..-.+- .....+++.++..+++ +|.-||.++++-+..+++.-..-. ....++..|...+.+ .++-+|.-++-
T Consensus 353 ~~~~~~---~~~~~l~p~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~lp~l~~~~~d--~~~~vr~~~~~ 424 (588)
T 1b3u_A 353 PILGKD---NTIEHLLPLFLAQLKD-ECPEVRLNIISNLDCVNEVIGIRQ--LSQSLLPAIVELAED--AKWRVRLAIIE 424 (588)
T ss_dssp HHHCHH---HHHHHTHHHHHHHHTC-SCHHHHHHHHTTCHHHHHHSCHHH--HHHHHHHHHHHHHTC--SSHHHHHHHHH
T ss_pred HHhhHh---HHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHhcC--CCchHHHHHHH
Confidence 542211 1223578888899999 889999999999999887311111 123556666666543 34445533433
Q ss_pred Hhhhhcc-ccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHh
Q 012448 278 ISGRLLS-KDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFD 356 (463)
Q Consensus 278 i~g~i~~-f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~ 356 (463)
..+.+.. .|. .+. .+.++..++..+.+++..++..|+.++|.++........+ ..++..+..
T Consensus 425 ~l~~l~~~~~~--~~~-------~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--------~~llp~l~~ 487 (588)
T 1b3u_A 425 YMPLLAGQLGV--EFF-------DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAH--------ATIIPKVLA 487 (588)
T ss_dssp HHHHHHHHHCG--GGC-------CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHH--------HHTHHHHHH
T ss_pred HHHHHHHHcCH--HHH-------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHH--------HHHHHHHHH
Confidence 3333322 111 011 1233444445567888999999999999998754322111 222222222
Q ss_pred hccch---hhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHHH
Q 012448 357 RQGHG---KQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMIT 432 (463)
Q Consensus 357 ~~~~~---~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l~ 432 (463)
...+. .|..++.+++.+...- . .+. .. . .-+..++..+ .|.|++|.++...|.
T Consensus 488 ~~~~~~~~~R~~a~~~l~~l~~~~--~--------~~~-~~----~--------~~~~~l~~~l~d~~~~Vr~~a~~~l~ 544 (588)
T 1b3u_A 488 MSGDPNYLHRMTTLFCINVLSEVC--G--------QDI-TT----K--------HMLPTVLRMAGDPVANVRFNVAKSLQ 544 (588)
T ss_dssp TTTCSCHHHHHHHHHHHHHHHHHH--H--------HHH-HH----H--------HTHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHHHHhc--C--------HHH-HH----H--------HHHHHHHhhCCCCCchHHHHHHHHHH
Confidence 22221 1777888888776521 0 001 11 1 1133445555 788899998888888
Q ss_pred HhhcC
Q 012448 433 GLVAR 437 (463)
Q Consensus 433 ~l~~~ 437 (463)
.++.+
T Consensus 545 ~l~~~ 549 (588)
T 1b3u_A 545 KIGPI 549 (588)
T ss_dssp HHGGG
T ss_pred HHHHH
Confidence 88864
No 40
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.10 E-value=1.2e-08 Score=110.03 Aligned_cols=356 Identities=12% Similarity=0.072 Sum_probs=222.3
Q ss_pred hHHHHHccccCCCCcchH-HHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448 41 LSVILNTLQTKPDVPGLE-DTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL 119 (463)
Q Consensus 41 l~~L~~~L~~~~~~~~~~-~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~ 119 (463)
+..|-..|++.+ ...+ +.+.-++...+. | .-...+...+...+.+++..+|+++.-.+..+++.. .. ..
T Consensus 15 ~~~i~~~L~~~~--~~~k~~~~~kli~~~~~---G-~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~---~e-~~ 84 (591)
T 2vgl_B 15 IFELKAELNNEK--KEKRKEAVKKVIAAMTV---G-KDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ---PD-MA 84 (591)
T ss_dssp HHHHHHHTTSSC--HHHHHHHHHHHHHHHHT---T-CCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS---HH-HH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHHHC---C-CChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC---ch-HH
Confidence 445666676655 2222 222333333321 2 223345566777999999999999999999887754 33 33
Q ss_pred HHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhc
Q 012448 120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSV 199 (463)
Q Consensus 120 ~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~ 199 (463)
.+ ++..+...+++++..+...|+.+|..+. .+.+ . +.+.+ .+.+.+.+.++.||..+..++.++++.
T Consensus 85 ~l-----~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~---~-~~l~~--~l~~~L~d~~~~VRk~A~~al~~i~~~ 151 (591)
T 2vgl_B 85 IM-----AVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKI---T-EYLCE--PLRKCLKDEDPYVRKTAAVCVAKLHDI 151 (591)
T ss_dssp HT-----THHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGG---H-HHHHH--HHHHHSSCSCHHHHHHHHHHHHHHHHS
T ss_pred HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHH---H-HHHHH--HHHHHcCCCChHHHHHHHHHHHHHHhh
Confidence 32 3446667899999999999998888775 2222 1 12233 566678899999999999999999999
Q ss_pred CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhH
Q 012448 200 SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMI 278 (463)
Q Consensus 200 S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili 278 (463)
+++..+ +.++++.+...|.+ +|.-|+.+|+..|.+++. .+..+.+-...+.+.+|+..+.+ .||+.+...+-+
T Consensus 152 ~p~~~~---~~~~~~~l~~lL~d-~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~--~~~~~q~~il~~ 225 (591)
T 2vgl_B 152 NAQMVE---DQGFLDSLRDLIAD-SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE--CTEWGQIFILDC 225 (591)
T ss_dssp SCCCHH---HHHHHHHHHHTTSC-SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH--CCHHHHHHHHHH
T ss_pred Chhhcc---cccHHHHHHHHhCC-CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC--CCchHHHHHHHH
Confidence 987654 45899999999999 999999999999999998 33221111122446666666653 678766444433
Q ss_pred hhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC----CHHHHHHHhhcCchhHHHHHHHH
Q 012448 279 SGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS----SIQGATLLLLCLPPAARHVIDAA 354 (463)
Q Consensus 279 ~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs----s~eGk~~L~~~~~~~~~~~l~~~ 354 (463)
.+.+.+. +. .....+++.+...+++.++.++-.|+++++.++. +.++.+.+... +...+-..
T Consensus 226 l~~l~~~-------~~---~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~----~~~~L~~L 291 (591)
T 2vgl_B 226 LSNYNPK-------DD---REAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKK----LAPPLVTL 291 (591)
T ss_dssp HHTSCCC-------SH---HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHH----THHHHHHH
T ss_pred HHHhCCC-------Ch---HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHH----HHHHHHHH
Confidence 4444431 11 1123456666677888999999999999999984 33444433221 11111111
Q ss_pred Hhhccchh--hHhHHhhhHHHhcCCCchhh----hh---hhhhHHHHHHHHHHHHHhhCCCCChhH----HHHHHh-cCC
Q 012448 355 FDRQGHGK--QLAALHGLANIAGKTRSEDK----II---LNADAEESLRHLIYEVASRSSKLTPSG----LFLSVL-QQA 420 (463)
Q Consensus 355 ~~~~~~~~--k~r~L~al~~Il~~~r~~~~----~i---l~~~~e~~l~~~~ye~~~~~~~~~p~~----~~~~~~-qpF 420 (463)
..+.+ |..++.+++.|.......-+ .+ .+++ . .+++..-+.++..-..+... -+..+. ...
T Consensus 292 ---~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~-~-~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d 366 (591)
T 2vgl_B 292 ---LSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDP-I-YVKLEKLDIMIRLASQANIAQVLAELKEYATEVD 366 (591)
T ss_dssp ---TTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSC-H-HHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSC
T ss_pred ---hcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCCh-H-HHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCC
Confidence 12223 88889999888763211100 00 1222 2 24444436666533333233 344566 678
Q ss_pred HHHHHHHHHHHHHhhc-----CchhHHHh
Q 012448 421 AEIRLAGYRMITGLVA-----RPWCLMEL 444 (463)
Q Consensus 421 ~elr~A~~~~l~~l~~-----~~Wg~~~i 444 (463)
+++|..+.+-+..++. ..|++..+
T Consensus 367 ~~~r~~~v~aI~~la~~~~~~~~~~v~~L 395 (591)
T 2vgl_B 367 VDFVRKAVRAIGRCAIKVEQSAERCVSTL 395 (591)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 9999999998888886 36765533
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.10 E-value=6.5e-09 Score=100.40 Aligned_cols=236 Identities=8% Similarity=-0.031 Sum_probs=161.2
Q ss_pred HHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 012448 30 AAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLE 109 (463)
Q Consensus 30 ~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~ 109 (463)
..+.+..+...++.|+..|++.+ +..+..++..|..+- .+...+.|...|+++++.||..+++.++++-.
T Consensus 14 ~~l~~~~~~~~i~~L~~~L~~~~--~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 14 YGLYNQCKKLNDDELFRLLDDHN--SLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKI 83 (280)
T ss_dssp HHHHHHHHTSCHHHHHHHTTCSS--HHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHhhHHHHHHHHHcCC--HHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 34455567778899999998755 777778888888772 24567788889999999999999999988643
Q ss_pred CCchhHHHHHHHhhccCcHHHHH-HhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHH
Q 012448 110 DSDLEASCALQLLIDYEIYPLLL-DCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVR 188 (463)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~li-~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~R 188 (463)
.. .. .. .+++++. .++.|++..|...|+.+|..++...+ .+++..++ .|.+.+.+.+..+|..
T Consensus 84 ~~---~~-~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~--~L~~~l~d~~~~vR~~ 147 (280)
T 1oyz_A 84 CK---KC-ED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVE--QSQITAFDKSTNVRRA 147 (280)
T ss_dssp CT---TT-HH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHH--HHHHHTTCSCHHHHHH
T ss_pred cc---cc-ch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHH--HHHHHhhCCCHHHHHH
Confidence 22 11 11 2445555 46788999999999999998874332 11223444 5665677888888888
Q ss_pred HHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccc
Q 012448 189 VLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATE 268 (463)
Q Consensus 189 v~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~d 268 (463)
+...+.++.. .+.++.++..+++ +|.-||..++..|..+... ....+..|...+.+ .|
T Consensus 148 a~~aL~~~~~-----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d--~~ 205 (280)
T 1oyz_A 148 TAFAISVIND-----------KATIPLLINLLKD-PNGDVRNWAAFAININKYD--------NSDIRDCFVEMLQD--KN 205 (280)
T ss_dssp HHHHHHTC--------------CCHHHHHHHHTC-SSHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTC--SC
T ss_pred HHHHHHhcCC-----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcC--CC
Confidence 8888776653 2477888888888 8888999999988877531 12345666666654 56
Q ss_pred hhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448 269 TILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS 331 (463)
Q Consensus 269 pl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs 331 (463)
|.+|..++...|.+.. ....|.++..+ ++ ++.+..|+++||.||.
T Consensus 206 ~~vR~~A~~aL~~~~~------------~~~~~~L~~~l----~d--~~vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 206 EEVRIEAIIGLSYRKD------------KRVLSVLCDEL----KK--NTVYDDIIEAAGELGD 250 (280)
T ss_dssp HHHHHHHHHHHHHTTC------------GGGHHHHHHHH----TS--SSCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCC------------HhhHHHHHHHh----cC--ccHHHHHHHHHHhcCc
Confidence 7778777776666653 12244444432 23 3478889999999987
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.10 E-value=9.9e-10 Score=122.69 Aligned_cols=309 Identities=13% Similarity=0.051 Sum_probs=202.2
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-------chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCc
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-------SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSD 112 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-------~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~ 112 (463)
-+|.|+.++++.+ +..++.+..+|.+++...... .....+.+.+..+++++++.||..++++++.++....
T Consensus 129 ll~~L~~~l~~~~--~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 129 LLPKLCSLLDSED--YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp HHHHHHHHHSCSS--HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 3677888888765 677888888998887654332 1134568888999999999999999999998876541
Q ss_pred hhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhhcCCchhHHHHHH
Q 012448 113 LEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVAQCSSLGRVRVLS 191 (463)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~e 191 (463)
.. ....+ .++++.++..++|++..|.+.|..+|..+++..+.. ...++ ++++ .+...+.+.++.+|..+++
T Consensus 207 --~~-~~~~~--~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~--~l~~~~~~~~~~vr~~a~e 278 (852)
T 4fdd_A 207 --QA-LMLHI--DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVE--YMLQRTQDQDENVALEACE 278 (852)
T ss_dssp --HH-HHTSH--HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHH--HHHHHHTCSSHHHHHHHHH
T ss_pred --HH-HHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHH--HHHHHccCCcHHHHHHHHH
Confidence 11 21111 257888889999999999999999999998876532 11111 2333 4444666788999999999
Q ss_pred HHHHHHhcCH--HHHHHHHhhccHHHHHhhcC----------CC---C--------cHHHHHhHHHHHHHHHhhHHHHHH
Q 012448 192 LIVKLFSVSR--SVASVIFKANLLTLLEEGVS----------KK---N--------DTLETLSILELLYELAEIQHSAEF 248 (463)
Q Consensus 192 l~v~ia~~S~--~~~~~v~~sgl~~~ll~eL~----------~~---~--------DvLv~lnalell~eLa~t~~g~~~ 248 (463)
.+..+++... ..+.- .-..+++.++..+. +. + +--+|..+.+.+..++.... +.
T Consensus 279 ~l~~l~~~~~~~~~~~~-~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~ 355 (852)
T 4fdd_A 279 FWLTLAEQPICKDVLVR-HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DE 355 (852)
T ss_dssp HHHHHTTSTTHHHHHTT-THHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GG
T ss_pred HHHHHhcchhHHHHHHH-HHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence 9999987541 11111 11256677766652 10 1 11368899999999998432 22
Q ss_pred HHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHh
Q 012448 249 LSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQ 328 (463)
Q Consensus 249 L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~ 328 (463)
+. ..++..+.+.+.+ .++-+|..++++.|-+... .-..+ ....+.++..++..+.++++.++.+|+|++|.
T Consensus 356 ~~-~~l~~~l~~~l~~--~~~~~R~aa~~alg~i~~~--~~~~~----~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~ 426 (852)
T 4fdd_A 356 LL-PHILPLLKELLFH--HEWVVKESGILVLGAIAEG--CMQGM----IPYLPELIPHLIQCLSDKKALVRSITCWTLSR 426 (852)
T ss_dssp GH-HHHHHHHHHHHTC--SSHHHHHHHHHHHHHTTTT--THHHH----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhc--chHHH----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 22 2456666666654 4788888888888888762 21111 12345566666677888999999999999999
Q ss_pred hcCCHHHHHHHhhcCchhHHHHHHHHHhhccc-hh--hHhHHhhhHHHhc
Q 012448 329 IGSSIQGATLLLLCLPPAARHVIDAAFDRQGH-GK--QLAALHGLANIAG 375 (463)
Q Consensus 329 Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~-~~--k~r~L~al~~Il~ 375 (463)
++....+. .. ...+..++..+.....+ .+ |..+..+++++..
T Consensus 427 l~~~~~~~-~~----~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 427 YAHWVVSQ-PP----DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp THHHHHHS-CT----TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhccc-hH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 99643221 01 22344444444444432 12 6666777766654
No 43
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.04 E-value=3.1e-08 Score=109.58 Aligned_cols=309 Identities=15% Similarity=0.100 Sum_probs=200.7
Q ss_pred HHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCC--CHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 012448 44 ILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTAD--SHSVKRLACKTVTCLLEDSDLEASCALQL 121 (463)
Q Consensus 44 L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~--~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~ 121 (463)
|+.+|.+.+ +.. ..++.++..+.....+..-.+.+.+.+...+.++ ++.+|+.++..++++.+... .. ..+.
T Consensus 95 ll~~l~~~~--~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~-~~~~ 168 (876)
T 1qgr_A 95 VLHTLGTET--YRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PE-QLQD 168 (876)
T ss_dssp HHHHTTTCC--SSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HH-HHGG
T ss_pred HHHHhCCCc--HHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--Hh-hHHh
Confidence 888887654 556 8888899888766555455677899999999999 99999999999999987531 11 2111
Q ss_pred hhccCcHHHHHHhhcCC--chHHHHHHHHHHHHHhCCCC-Ccc-ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448 122 LIDYEIYPLLLDCLING--NEEVATASMDAIKKLAGFPN-GID-IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF 197 (463)
Q Consensus 122 ~~~~~l~~~li~~l~d~--d~~va~~A~~~L~~lak~~~-~l~-~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia 197 (463)
. -+.+++.+..++.++ +..+...|+++|..+...-. .++ ..+....++ .+.+.+...++.+|..+++++..++
T Consensus 169 ~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~--~l~~~~~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 169 K-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ--VVCEATQCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp G-HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH--HHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 1 135788888999998 58899999999999875421 110 000001232 3444455678889999999999999
Q ss_pred hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHH-------------------HHHHh--cchHH
Q 012448 198 SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSA-------------------EFLSR--TTLLQ 256 (463)
Q Consensus 198 ~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~-------------------~~L~~--~gi~~ 256 (463)
+..++.+.......+++.++..+.+ +|.-++..+++.+..+++..... .|+.. ..++.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 324 (876)
T 1qgr_A 246 SLYYQYMETYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (876)
T ss_dssp HHSGGGCHHHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhH
Confidence 9888776655555899999999988 88999999999999999853211 11110 23455
Q ss_pred HHHHHhcccc-----cchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448 257 LLCSLIGNSA-----TETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS 331 (463)
Q Consensus 257 ~L~~~i~~~~-----~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs 331 (463)
.+...+.... +++-+|.-+..+.+.+... +.+ ...|.++..+.+.+.+++...+.+|++++|.|+.
T Consensus 325 ~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~-----~~~----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC-----CED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (876)
T ss_dssp HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH-----HGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHHHHHHH-----CcH----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHc
Confidence 5556654322 2233443333333433321 011 1133444444445677889999999999999997
Q ss_pred CHHHHHHHhhcCchhHHHHHHHHHhhccch-h--hHhHHhhhHHHhcC
Q 012448 332 SIQGATLLLLCLPPAARHVIDAAFDRQGHG-K--QLAALHGLANIAGK 376 (463)
Q Consensus 332 s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~-~--k~r~L~al~~Il~~ 376 (463)
..... .+.. .+..++..+.....+. + |.+|..+++.+...
T Consensus 396 ~~~~~-~~~~----~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 396 GPEPS-QLKP----LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp SSCHH-HHHH----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHH-HHHH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 43211 1111 2233444444444432 2 77888999888874
No 44
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.97 E-value=3.6e-08 Score=107.07 Aligned_cols=288 Identities=11% Similarity=0.074 Sum_probs=181.5
Q ss_pred hHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 012448 41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQ 120 (463)
Q Consensus 41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~ 120 (463)
.+.|..-|++.| +..+..+..+|..+ ...++.+.+.+.+..+|.|++|.||.-|+.+++++.+.. .. ..+
T Consensus 109 in~l~kDL~~~n--~~vr~lAL~~L~~i----~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~---p~-~v~ 178 (618)
T 1w63_A 109 TNCIKNDLNHST--QFVQGLALCTLGCM----GSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV---PE-LME 178 (618)
T ss_dssp HHHHHHHHSCSS--SHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC---GG-GGG
T ss_pred HHHHHHhcCCCC--HhHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC---hH-HHH
Confidence 345556666655 66666666677777 345677888999999999999999999999999998865 33 322
Q ss_pred HhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh---------------cCCchh
Q 012448 121 LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA---------------QCSSLG 185 (463)
Q Consensus 121 ~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~---------------~~~~~v 185 (463)
++++.+..+|.|+|..|...|+.+|..++.+.++....|. ..++ .|-+.+. ..++-.
T Consensus 179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~-~~v~--~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 250 (618)
T 1w63_A 179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR-KLVP--QLVRILKNLIMSGYSPEHDVSGISDPFL 250 (618)
T ss_dssp -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH-TTHH--HHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH-HHHH--HHHHHHHHHHcCCCCccccccCCCCChH
Confidence 5677777899999999999999999999887653211111 2223 2332222 258999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhc---CCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHh
Q 012448 186 RVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGV---SKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLI 262 (463)
Q Consensus 186 R~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL---~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i 262 (463)
+..+.+++..++...++..+.+. .++..++... ++ .+.-|...|+..+..+...+.. . ...+..|...+
T Consensus 251 q~~il~~L~~l~~~~~~~~~~~~--~~L~~l~~~~~~~~~-~~~aV~~ea~~~i~~l~~~~~l----~-~~a~~~L~~~L 322 (618)
T 1w63_A 251 QVRILRLLRILGRNDDDSSEAMN--DILAQVATNTETSKN-VGNAILYETVLTIMDIKSESGL----R-VLAINILGRFL 322 (618)
T ss_dssp HHHHHHHHHHHTTTCHHHHHTTH--HHHHHHHHTSCCSST-HHHHHHHHHHHHHHHSCCCHHH----H-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHH--HHHHHHHhccccccc-hHHHHHHHHHHHHHhcCCCHHH----H-HHHHHHHHHHH
Confidence 99999999999998887654433 3555555432 33 4556777777777766443221 1 14556666666
Q ss_pred cccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhc
Q 012448 263 GNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLC 342 (463)
Q Consensus 263 ~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~ 342 (463)
.+ .||-+|--++...+.+... .+ ..+.. ....+|.++.++|.+++..|+++++.++....-...+
T Consensus 323 ~~--~d~~vr~~aL~~L~~i~~~-----~p-~~~~~----~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv--- 387 (618)
T 1w63_A 323 LN--NDKNIRYVALTSLLKTVQT-----DH-NAVQR----HRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMM--- 387 (618)
T ss_dssp TC--SSTTTHHHHHHHHHHHHHH-----HH-HHHGG----GHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHH---
T ss_pred hC--CCCchHHHHHHHHHHHHhh-----CH-HHHHH----HHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHH---
Confidence 54 5666664454444444431 00 00112 1234556778899999999999999999843211111
Q ss_pred CchhHHHHHHHHHhhccchhhHhHHhhhHHHhc
Q 012448 343 LPPAARHVIDAAFDRQGHGKQLAALHGLANIAG 375 (463)
Q Consensus 343 ~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~ 375 (463)
+.+++ +.......-|..++.+++.+..
T Consensus 388 -----~eL~~-~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 388 -----KELLY-FLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp -----HHHHH-HHHHCCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHH-HHHhCCHHHHHHHHHHHHHHHH
Confidence 11211 1111111227777777777765
No 45
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.96 E-value=7e-08 Score=106.50 Aligned_cols=312 Identities=12% Similarity=0.067 Sum_probs=196.1
Q ss_pred hHHHHHccccC-CCCcchHHHHHHHHHHHhcccccc-----chhhchHHHHHHhhcCC--CHHHHHHHHHHHHHHHhCCc
Q 012448 41 LSVILNTLQTK-PDVPGLEDTLVVCLERIFKTKYGA-----SLIPHYMPFVQVGLTAD--SHSVKRLACKTVTCLLEDSD 112 (463)
Q Consensus 41 l~~L~~~L~~~-~~~~~~~~~~~~vL~~il~~~~~~-----~l~~~~~~~l~~gL~h~--~~~Vr~Lal~~l~~i~~~~~ 112 (463)
+|.|+.++++. + +..++.+..+|..+.....+. ...+.+.+.+..++.++ ++.||..+++.++.++....
T Consensus 136 l~~L~~~l~~~~~--~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 136 MKIMVDNTGAEQP--ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHTSTTSC--HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHhcCCC--HHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46677777765 4 677888888898887654432 24455678889999998 89999999999999875441
Q ss_pred hhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC-ccccccCCCcchhhHhhHhhcCCchhHHHHHH
Q 012448 113 LEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG-IDIIFPADNKAATDLGNLVAQCSSLGRVRVLS 191 (463)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~-l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~e 191 (463)
. . .........+++.+...+.+++..+.+.|..+|..+++..+. +...+...+++ .+...+...++.+|..+++
T Consensus 214 ~--~-~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~vr~~a~~ 288 (861)
T 2bpt_A 214 N--N-MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYA--LTIATMKSPNDKVASMTVE 288 (861)
T ss_dssp H--H-HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHH--HHHHHTTCSSHHHHHHHHH
T ss_pred H--H-ccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCcHHHHHHHHH
Confidence 1 0 110001123677777888999999999999999999865431 11111112332 3333555778899999999
Q ss_pred HHHHHHhcCHHH-----------------HHHHHhhccHHHHHhhcCCC------CcHHHHHhHHHHHHHHHhhHHHHHH
Q 012448 192 LIVKLFSVSRSV-----------------ASVIFKANLLTLLEEGVSKK------NDTLETLSILELLYELAEIQHSAEF 248 (463)
Q Consensus 192 l~v~ia~~S~~~-----------------~~~v~~sgl~~~ll~eL~~~------~DvLv~lnalell~eLa~t~~g~~~ 248 (463)
++..+++...+. +.... ..+++.++..+.+. ++.-+|..+.++|..++..-. +.
T Consensus 289 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~ 365 (861)
T 2bpt_A 289 FWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NH 365 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GG
T ss_pred HHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--Hh
Confidence 999998774321 11111 46788888877641 335789999999999998421 11
Q ss_pred HHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccc-hhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHH
Q 012448 249 LSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSH-MFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALG 327 (463)
Q Consensus 249 L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG 327 (463)
+. ..++..+.+.+.+ .++-.|.-++.+.|-+.. +.- .. ....++.++..+++.+.++++.++.+|+|++|
T Consensus 366 ~~-~~l~~~l~~~l~~--~~~~~r~~a~~~l~~i~~--~~~~~~----~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~ 436 (861)
T 2bpt_A 366 IL-EPVLEFVEQNITA--DNWRNREAAVMAFGSIMD--GPDKVQ----RTYYVHQALPSILNLMNDQSLQVKETTAWCIG 436 (861)
T ss_dssp GH-HHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSS--SSCHHH----HHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHcCC--CChhHHHHHHHHHHHHHc--CCCHHH----HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 11 1334444444443 456667667777777664 211 11 12234556666666777889999999999999
Q ss_pred hhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchh--hHhHHhhhHHHhc
Q 012448 328 QIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGK--QLAALHGLANIAG 375 (463)
Q Consensus 328 ~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~--k~r~L~al~~Il~ 375 (463)
.++...... .. ....+..++..+.....+.+ +..+..++..+..
T Consensus 437 ~l~~~~~~~-~~---~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 437 RIADSVAES-ID---PQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHHHGGG-SC---TTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh-cC---CHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 998643210 00 02234455555444444334 5566677776665
No 46
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.96 E-value=2.6e-08 Score=101.58 Aligned_cols=278 Identities=13% Similarity=0.095 Sum_probs=182.0
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhccccc---cchhhchHHHHHHhhcCC--CHHHHHHHHHHHHHHHhCCchh
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG---ASLIPHYMPFVQVGLTAD--SHSVKRLACKTVTCLLEDSDLE 114 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~---~~l~~~~~~~l~~gL~h~--~~~Vr~Lal~~l~~i~~~~~~~ 114 (463)
-+|.|+.++++..+++..++.+..+|..+.....+ ....+.+.+.+..+|.++ ++.||..+++.++.++.....
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~- 207 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA- 207 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH-
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 35778888887510267788888899988765433 233455788899999999 899999999999998754311
Q ss_pred HHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC-ccccccCCCcchhhHhhHhhcCCchhHHHHHHHH
Q 012448 115 ASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG-IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLI 193 (463)
Q Consensus 115 ~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~-l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~ 193 (463)
. ........-+++.+...+.+++..+.+.+..+|..++...+. +...+...+++ .+...+...++.+|..+++.+
T Consensus 208 -~-~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~v~~~a~~~l 283 (462)
T 1ibr_B 208 -N-FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA--ITIEAMKSDIDEVALQGIEFW 283 (462)
T ss_dssp -H-HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHH--HHHHHHHCSSHHHHHHHHHHH
T ss_pred -h-hhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCchHHHHHHHHHH
Confidence 0 100001112566677788999999999999999999866542 22222224444 333355678999999999999
Q ss_pred HHHHhcCHHHHH------------------HH--HhhccHHHHHhhcCCC------CcHHHHHhHHHHHHHHHhhHHHHH
Q 012448 194 VKLFSVSRSVAS------------------VI--FKANLLTLLEEGVSKK------NDTLETLSILELLYELAEIQHSAE 247 (463)
Q Consensus 194 v~ia~~S~~~~~------------------~v--~~sgl~~~ll~eL~~~------~DvLv~lnalell~eLa~t~~g~~ 247 (463)
..++....+... .+ .-..+++.++..+.+. +|--+|..+..+|..++..-. -.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~ 362 (462)
T 1ibr_B 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DD 362 (462)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TT
T ss_pred HHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HH
Confidence 998876422110 11 0135677777766431 344689999999999998422 12
Q ss_pred HHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccc-hhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHH
Q 012448 248 FLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSH-MFIDESSAKTVISAIDGRLGFLQSQDSDECESALEAL 326 (463)
Q Consensus 248 ~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtl 326 (463)
.+ ..++..+...+.+ .++-+|.-++++.|-+.. +.- ..+ ....+.++..++..+.++++.++..|+|+|
T Consensus 363 ~~--~~~~~~l~~~l~~--~~~~~r~aal~~l~~l~~--~~~~~~~----~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l 432 (462)
T 1ibr_B 363 IV--PHVLPFIKEHIKN--PDWRYRDAAVMAFGCILE--GPEPSQL----KPLVIQAMPTLIELMKDPSVVVRDTAAWTV 432 (462)
T ss_dssp HH--HHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSS--SSCTTTT----CTTTTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcC--CChHHHHHHHHHHHHHhc--CCcHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 22 2455666666653 567778778888887775 211 111 111233444455567788899999999999
Q ss_pred HhhcCCH
Q 012448 327 GQIGSSI 333 (463)
Q Consensus 327 G~Igss~ 333 (463)
|.++...
T Consensus 433 ~~~~~~~ 439 (462)
T 1ibr_B 433 GRICELL 439 (462)
T ss_dssp HHHHHHG
T ss_pred HHHHHhc
Confidence 9998633
No 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.93 E-value=3.9e-08 Score=90.84 Aligned_cols=192 Identities=14% Similarity=0.083 Sum_probs=143.7
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC
Q 012448 78 IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP 157 (463)
Q Consensus 78 ~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~ 157 (463)
.+...+.|...|+++++.||..+++.++++-. ++.++.++..+.|++..|...|+.+|..+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~---------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD---------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-- 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--
Confidence 35668889999999999999999999998521 2467888899999999999999999999863
Q ss_pred CCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHH
Q 012448 158 NGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLY 237 (463)
Q Consensus 158 ~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~ 237 (463)
+..++ .|.+.+.+.+..+|..+...+.++.. .+.++.++..+++ +|.-||..+++.|.
T Consensus 80 --------~~~~~--~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~ 137 (211)
T 3ltm_A 80 --------ERAVE--PLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKD-EDWFVRIAAAFALG 137 (211)
T ss_dssp --------GGGHH--HHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC-SSHHHHHHHHHHHH
T ss_pred --------HHHHH--HHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhC-CCHHHHHHHHHHHH
Confidence 23455 66667888999999999999888753 3577888888999 99999999999999
Q ss_pred HHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChh
Q 012448 238 ELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSD 317 (463)
Q Consensus 238 eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~ 317 (463)
.+.. ...+..|...+.+ .||.+|..++...|.+.. ....|.+. ++++++++.
T Consensus 138 ~~~~----------~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~------------~~~~~~L~----~~l~d~~~~ 189 (211)
T 3ltm_A 138 EIGD----------ERAVEPLIKALKD--EDGWVRQSAADALGEIGG------------ERVRAAME----KLAETGTGF 189 (211)
T ss_dssp HHCC----------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCS------------HHHHHHHH----HHHHHCCHH
T ss_pred HcCC----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCc------------hhHHHHHH----HHHhCCCHH
Confidence 8854 3467778887753 678888667666666543 11122322 245678899
Q ss_pred hhhHHHHHHHhhcCCHHHH
Q 012448 318 ECESALEALGQIGSSIQGA 336 (463)
Q Consensus 318 ~~~~A~dtlG~Igss~eGk 336 (463)
++..|.++|+.++.+..+.
T Consensus 190 vr~~A~~aL~~~~~~~~~~ 208 (211)
T 3ltm_A 190 ARKVAVNYLETHKSFNHHH 208 (211)
T ss_dssp HHHHHHHHHHC--------
T ss_pred HHHHHHHHHHhcCCCCCCC
Confidence 9999999999999876654
No 48
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.92 E-value=4e-08 Score=90.05 Aligned_cols=193 Identities=13% Similarity=0.083 Sum_probs=149.7
Q ss_pred cccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHH
Q 012448 73 YGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKK 152 (463)
Q Consensus 73 ~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~ 152 (463)
++....+...+.+...|+++++.||..+++.++++-. .+.++.++..+.+++..+...|+.+|..
T Consensus 7 ~~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~---------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~ 71 (201)
T 3ltj_A 7 HHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD---------------ERAVEPLIKALKDEDAWVRRAAADALGQ 71 (201)
T ss_dssp CCCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------------GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred cccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC---------------hhHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 4455666778999999999999999999999998521 1457888899999999999999999998
Q ss_pred HhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhH
Q 012448 153 LAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSI 232 (463)
Q Consensus 153 lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lna 232 (463)
++. +..++ .|.+.+.+.+..+|..+...+.++.. ...++.++..+++ +|.-||..+
T Consensus 72 ~~~----------~~~~~--~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d-~~~~vr~~a 127 (201)
T 3ltj_A 72 IGD----------ERAVE--PLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKD-EDWFVRIAA 127 (201)
T ss_dssp HCC----------GGGHH--HHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC-SSHHHHHHH
T ss_pred hCC----------HHHHH--HHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcC-CCHHHHHHH
Confidence 853 23455 66667888899999999999888753 2577888888999 999999999
Q ss_pred HHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhcccc
Q 012448 233 LELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQ 312 (463)
Q Consensus 233 lell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~ 312 (463)
++.|..+.. ...+..|...+.+ .||.+|..++...|.+.. ....|.+.+ .++
T Consensus 128 ~~aL~~~~~----------~~~~~~L~~~l~d--~~~~vr~~A~~aL~~~~~------------~~~~~~L~~----~l~ 179 (201)
T 3ltj_A 128 AFALGEIGD----------ERAVEPLIKALKD--EDGWVRQSAADALGEIGG------------ERVRAAMEK----LAE 179 (201)
T ss_dssp HHHHHHHTC----------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCS------------HHHHHHHHH----HHH
T ss_pred HHHHHHhCC----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCc------------hhHHHHHHH----HHh
Confidence 999988854 4567788888865 578888777777776643 112333333 346
Q ss_pred CCChhhhhHHHHHHHhhcCC
Q 012448 313 SQDSDECESALEALGQIGSS 332 (463)
Q Consensus 313 ~~d~~~~~~A~dtlG~Igss 332 (463)
++|+.++..|.++|+.|.+.
T Consensus 180 d~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 180 TGTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HCCHHHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 78899999999999998763
No 49
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.92 E-value=3.4e-07 Score=101.15 Aligned_cols=382 Identities=11% Similarity=0.113 Sum_probs=250.6
Q ss_pred HHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc-chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 012448 30 AAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLL 108 (463)
Q Consensus 30 ~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~ 108 (463)
+..|+++...=.+-|-..+++ +..+..+..+|-|+-....+. .-..+..+.+.+.|.+++...|+.++..+.++.
T Consensus 287 ~~cR~~I~~~~~~~L~~~l~~----~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLS 362 (778)
T 3opb_A 287 ETMRTYITENYLQLLERSLNV----EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLS 362 (778)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS----GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHhHHHHHHHHhcc----HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 555888877667777777753 466777777998885433222 234457888999999998888999999999997
Q ss_pred hCCchhHHHHHHHhhccCcHHHHHHhhcC-CchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcC------
Q 012448 109 EDSDLEASCALQLLIDYEIYPLLLDCLIN-GNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQC------ 181 (463)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~li~~l~d-~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~------ 181 (463)
-+. .. --++..|.+++..++..+.. ++.++...+..+|.++.+..+.+... . .... +|++.+...
T Consensus 363 l~~---~V-Ke~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e-~-~~l~--~Lk~~A~~~~p~~~~ 434 (778)
T 3opb_A 363 LKA---SV-KIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXX-X-XXXX--XXXXXXXXXXPAADK 434 (778)
T ss_dssp TSS---HH-HHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCC-C-C--------------------
T ss_pred CCH---HH-HHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchh-h-hhhh--hhhhhccccCcccCc
Confidence 766 44 45677888899999999995 88999999999999999987643211 1 1222 555333221
Q ss_pred CchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHH
Q 012448 182 SSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSL 261 (463)
Q Consensus 182 ~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~ 261 (463)
++... -.-.....-.-..+.+.|.++.++..+++ ++.-+|-.++.+|..|+..+.+...++++|++..|+.+
T Consensus 435 ~d~~~-------~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S-~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~l 506 (778)
T 3opb_A 435 VGAEK-------AAKEDILLFNEKYILRTELISFLKREMHN-LSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEY 506 (778)
T ss_dssp CCTHH-------HHHHHHHHHHHHHTTTTTHHHHHHHHGGG-SCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHH
T ss_pred ccccc-------cchHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 11100 11111111133677899999999999998 89999999999999999999999999999999999999
Q ss_pred hcccccc-hhhhhhhhhHhhhhccccc-cchhcchhhhhhhHHHHHHHhccccCCCh-------------hhhhHHHHHH
Q 012448 262 IGNSATE-TILRSRAIMISGRLLSKDD-SHMFIDESSAKTVISAIDGRLGFLQSQDS-------------DECESALEAL 326 (463)
Q Consensus 262 i~~~~~d-pl~r~~aili~g~i~~f~~-~~~~~~~~~~k~~p~~l~~~f~~~~~~d~-------------~~~~~A~dtl 326 (463)
+.+.... .-.|..|.-+...+.-..+ ...|..+....+.|++++ ++.. +++. -.+--|+-+|
T Consensus 507 L~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~-LL~~--~~~~~~~~l~~~~~~~~l~~feAL~AL 583 (778)
T 3opb_A 507 LANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFE-LLPR--STPVDDNPLHNDEQIKLTDNYEALLAL 583 (778)
T ss_dssp TTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHH-TSCC--SSSCSSCC---CCCCCHHHHHHHHHHH
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHH-HcCC--CCCcccccccccccccHHHHHHHHHHH
Confidence 9875422 1135566666666653222 122321112245677666 3221 1111 1255799999
Q ss_pred HhhcCCH-----HHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHH
Q 012448 327 GQIGSSI-----QGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVA 401 (463)
Q Consensus 327 G~Igss~-----eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~ 401 (463)
+++++.+ +.++.+.+. ...+..+...++.. ....|..|..++.++...+ +. +. ..+
T Consensus 584 TNLAs~~~n~~E~~r~~Ii~~-~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~~--e~-----------i~----~k~ 644 (778)
T 3opb_A 584 TNLASSETSDGEEVCKHIVST-KVYWSTIENLMLDE-NVPLQRSTLELISNMMSHP--LT-----------IA----AKF 644 (778)
T ss_dssp HHHHHCCSHHHHHHHHHHHHS-HHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTSG--GG-----------TG----GGT
T ss_pred HHHhcCCcccchHHHHHHHHh-cCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCCc--HH-----------HH----HHH
Confidence 9999965 334545542 23555555444431 2233889999999999743 20 10 011
Q ss_pred hhCCCCCh-----hHHHHHHh-cCCHHHHHHHHHHHHHhh-cCchhHHHhhhccchhHhhc
Q 012448 402 SRSSKLTP-----SGLFLSVL-QQAAEIRLAGYRMITGLV-ARPWCLMELCSKQEIINTVT 455 (463)
Q Consensus 402 ~~~~~~~p-----~~~~~~~~-qpF~elr~A~~~~l~~l~-~~~Wg~~~i~~~~gfie~ll 455 (463)
++. .+| +..+..++ -..+++|.||-..|.-+. ..+-..+.+...+++++.++
T Consensus 645 ~~~--~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll 703 (778)
T 3opb_A 645 FNL--ENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAI 703 (778)
T ss_dssp SCC--SSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHH
T ss_pred Hhh--cCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHH
Confidence 211 123 45677788 779999999999999985 68888888998888877765
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.91 E-value=9.8e-08 Score=105.31 Aligned_cols=313 Identities=12% Similarity=0.061 Sum_probs=199.4
Q ss_pred HHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCC-CHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 012448 42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTAD-SHSVKRLACKTVTCLLEDSDLEASCALQ 120 (463)
Q Consensus 42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~-~~~Vr~Lal~~l~~i~~~~~~~~~~~~~ 120 (463)
+.|+.+|.+.+ +..+.+++.+|..+.....|..--+.+.+.|...+.++ ++.+|+.++..++++.+.-..... ...
T Consensus 98 ~~ll~~l~~~~--~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~ 174 (861)
T 2bpt_A 98 TNALTALVSIE--PRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ-ALV 174 (861)
T ss_dssp HHHHHHHTCSS--HHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS-TTG
T ss_pred HHHHHHHCCCc--hHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh-HHH
Confidence 45677777654 77889999999998665545334567899999999999 999999999999999875421100 000
Q ss_pred HhhccCcHHHHHHhhcCC--chHHHHHHHHHHHHHhCCCC-Ccc-ccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448 121 LLIDYEIYPLLLDCLING--NEEVATASMDAIKKLAGFPN-GID-IIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL 196 (463)
Q Consensus 121 ~~~~~~l~~~li~~l~d~--d~~va~~A~~~L~~lak~~~-~l~-~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i 196 (463)
-. -..+++.+..++.++ +..|...|+++|..+...-. .+. ....+..++ .|.+.+...+..+|.-+++++..+
T Consensus 175 ~~-~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~--~l~~~~~~~~~~~r~~a~~~l~~l 251 (861)
T 2bpt_A 175 SS-SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQ--VVCEATQAEDIEVQAAAFGCLCKI 251 (861)
T ss_dssp GG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHH--HHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHH--HHHHHhcCCCHHHHHHHHHHHHHH
Confidence 01 124778888899998 78999999999988753321 000 000011233 444455667889999999999999
Q ss_pred HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHH---------------HHHh--cchHHHHH
Q 012448 197 FSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAE---------------FLSR--TTLLQLLC 259 (463)
Q Consensus 197 a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~---------------~L~~--~gi~~~L~ 259 (463)
+...++.+.......+++.++..+.+ .|.-++..+++.+..+++...... ++.. ..++..++
T Consensus 252 ~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll 330 (861)
T 2bpt_A 252 MSKYYTFMKPYMEQALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLL 330 (861)
T ss_dssp HHHHGGGCHHHHHHTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence 98766655443433788888889999 899999999999999998532110 1111 45677777
Q ss_pred HHhccccc-----chhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHH
Q 012448 260 SLIGNSAT-----ETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQ 334 (463)
Q Consensus 260 ~~i~~~~~-----dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~e 334 (463)
..+.+..+ ++-+|.-+.-..+.+.. .+. ....|.++..+.+.+.+++...+.+|++++|.|+....
T Consensus 331 ~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~-----~~~----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~ 401 (861)
T 2bpt_A 331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQ-----NCG----NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD 401 (861)
T ss_dssp HHTTCCCCC-CCCCCHHHHHHHHHHHHHHH-----HHG----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHhcccccccccCcHHHHHHHHHHHHHH-----Hcc----HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC
Confidence 77765432 23333223323333222 011 11234455544456677889999999999999997432
Q ss_pred HHHHHhhcCchhHHHHHHHHHhhccch-h--hHhHHhhhHHHhc
Q 012448 335 GATLLLLCLPPAARHVIDAAFDRQGHG-K--QLAALHGLANIAG 375 (463)
Q Consensus 335 Gk~~L~~~~~~~~~~~l~~~~~~~~~~-~--k~r~L~al~~Il~ 375 (463)
. ..+. +.+..++..+.....+. + |.+++.+++.+..
T Consensus 402 ~-~~~~----~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~ 440 (861)
T 2bpt_A 402 K-VQRT----YYVHQALPSILNLMNDQSLQVKETTAWCIGRIAD 440 (861)
T ss_dssp H-HHHH----HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred H-HHHH----HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 1 1221 12344555555444432 2 5566667766654
No 51
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.90 E-value=1e-07 Score=91.97 Aligned_cols=225 Identities=14% Similarity=0.041 Sum_probs=162.1
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHH-HhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQ-VGLTADSHSVKRLACKTVTCLLEDSDLEASCA 118 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~-~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~ 118 (463)
.++.|..+|++.+ +..+..++.+|..+-. +....+.+.+.+. .+++++++.||..++++++++..+. .. .
T Consensus 55 ~~~~L~~~l~d~~--~~vR~~A~~aL~~l~~---~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~---~~-~ 125 (280)
T 1oyz_A 55 AVRLAIEFCSDKN--YIRRDIGAFILGQIKI---CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN---PI-Y 125 (280)
T ss_dssp HHHHHHHHHTCSS--HHHHHHHHHHHHHSCC---CTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC---GG-G
T ss_pred HHHHHHHHHcCCC--HHHHHHHHHHHHHhcc---ccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC---Cc-c
Confidence 3677888888765 7788888889988721 1222334555665 5789999999999999999986433 11 0
Q ss_pred HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448 119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS 198 (463)
Q Consensus 119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~ 198 (463)
.+.+++.++.++.|++..|...|+.+|..++. +..++ .|.+.+.+.+..||..+...+.++..
T Consensus 126 -----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~--~L~~~l~d~~~~vr~~a~~aL~~~~~ 188 (280)
T 1oyz_A 126 -----SPKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIP--LLINLLKDPNGDVRNWAAFAININKY 188 (280)
T ss_dssp -----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHH--HHHHHHTCSSHHHHHHHHHHHHHHTC
T ss_pred -----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHH--HHHHHHcCCCHHHHHHHHHHHHhhcc
Confidence 12467888899999999999999999987753 23555 67768888999999999999988865
Q ss_pred cCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhH
Q 012448 199 VSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMI 278 (463)
Q Consensus 199 ~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili 278 (463)
.++ ..++.++..+++ +|.-||..++..|..+. ....+..|...+.+ |-+|..++..
T Consensus 189 ~~~---------~~~~~L~~~l~d-~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d----~~vr~~a~~a 244 (280)
T 1oyz_A 189 DNS---------DIRDCFVEMLQD-KNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKK----NTVYDDIIEA 244 (280)
T ss_dssp CCH---------HHHHHHHHHTTC-SCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTS----SSCCHHHHHH
T ss_pred CcH---------HHHHHHHHHhcC-CCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcC----ccHHHHHHHH
Confidence 454 356677788889 99999999999998876 34677888888765 2267666666
Q ss_pred hhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhh
Q 012448 279 SGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQI 329 (463)
Q Consensus 279 ~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~I 329 (463)
.|.+.. ....|.+.+ ++ -+.+|+.....+++.+..|
T Consensus 245 L~~i~~------------~~~~~~L~~-~l--~~~~~~~~~~~~~~~l~~~ 280 (280)
T 1oyz_A 245 AGELGD------------KTLLPVLDT-ML--YKFDDNEIITSAIDKLKRS 280 (280)
T ss_dssp HHHHCC------------GGGHHHHHH-HH--TTSSCCHHHHHHHHHHTCC
T ss_pred HHhcCc------------hhhhHHHHH-HH--hcCCCcHHHHHHHHHhhcC
Confidence 666543 022444343 32 2457788888899888754
No 52
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.90 E-value=1.1e-07 Score=103.35 Aligned_cols=288 Identities=14% Similarity=0.058 Sum_probs=179.4
Q ss_pred HHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 012448 42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQL 121 (463)
Q Consensus 42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~ 121 (463)
+.++.++++++ -..++.+-..+..+++. ..++..-....++..|+|+++.||.+|+++++++.. .. .++
T Consensus 73 ~~vik~~~s~~--~~~Krl~Yl~~~~~~~~--~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-----~~-~~~- 141 (618)
T 1w63_A 73 LECLKLIASQK--FTDKRIGYLGAMLLLDE--RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS-----SE-MCR- 141 (618)
T ss_dssp HHHHHHHHSSS--HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-----HH-HHH-
T ss_pred HHHHHHHcCCc--hHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-----HH-HHH-
Confidence 34555555443 22333333355555332 234444468889999999999999999999999842 22 332
Q ss_pred hhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCH
Q 012448 122 LIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSR 201 (463)
Q Consensus 122 ~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~ 201 (463)
.+++.|..++.+++..|.+.|+.++.++.+..|.+ +. +.++ .+.+.+...|..|+.-+..++.+|+.+++
T Consensus 142 ----~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~---v~-~~~~--~l~~lL~D~d~~V~~~Al~~L~~i~~~~~ 211 (618)
T 1w63_A 142 ----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL---ME-MFLP--ATKNLLNEKNHGVLHTSVVLLTEMCERSP 211 (618)
T ss_dssp ----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG---GG-GGGG--GTTTSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH---HH-HHHH--HHHHHhCCCCHhHHHHHHHHHHHHHHhCh
Confidence 57888999999999999999999999998866543 11 4555 67767788889999999999999999988
Q ss_pred HHHHHHHhhccHHHHHhhcCC--------------CCcHHHHHhHHHHHHHHHhh-HHHHHHHHhcchHHHHHHHhcccc
Q 012448 202 SVASVIFKANLLTLLEEGVSK--------------KNDTLETLSILELLYELAEI-QHSAEFLSRTTLLQLLCSLIGNSA 266 (463)
Q Consensus 202 ~~~~~v~~sgl~~~ll~eL~~--------------~~DvLv~lnalell~eLa~t-~~g~~~L~~~gi~~~L~~~i~~~~ 266 (463)
+..+... .+++.++.-|++ ..|...|..++++|+.++.. +... ..+.+-|...+....
T Consensus 212 ~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~ 284 (618)
T 1w63_A 212 DMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTE 284 (618)
T ss_dssp HHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSC
T ss_pred HHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccc
Confidence 7644443 466666554431 26999999999999999883 3321 223333433333211
Q ss_pred --cchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCc
Q 012448 267 --TETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLP 344 (463)
Q Consensus 267 --~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~ 344 (463)
.+. .++++... +.. ++.+...+-. ....++.+..++.+.|+.++-+|+++|+.|+... ..++..
T Consensus 285 ~~~~~---~~aV~~ea-~~~---i~~l~~~~~l--~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~--p~~~~~--- 350 (618)
T 1w63_A 285 TSKNV---GNAILYET-VLT---IMDIKSESGL--RVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD--HNAVQR--- 350 (618)
T ss_dssp CSSTH---HHHHHHHH-HHH---HHHSCCCHHH--HHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH--HHHHGG---
T ss_pred cccch---HHHHHHHH-HHH---HHhcCCCHHH--HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC--HHHHHH---
Confidence 111 01121100 000 0001000100 0123344445678899999999999999999742 222322
Q ss_pred hhHHHHHHHHHhhccc-h--hhHhHHhhhHHHhcC
Q 012448 345 PAARHVIDAAFDRQGH-G--KQLAALHGLANIAGK 376 (463)
Q Consensus 345 ~~~~~~l~~~~~~~~~-~--~k~r~L~al~~Il~~ 376 (463)
....++....+ . .|.++++.+..+...
T Consensus 351 -----~~~~i~~~l~d~d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 351 -----HRSTIVDCLKDLDVSIKRRAMELSFALVNG 380 (618)
T ss_dssp -----GHHHHHHGGGSSCHHHHHHHHHHHHHHCCS
T ss_pred -----HHHHHHHHccCCChhHHHHHHHHHHHHccc
Confidence 22333333343 2 288999998888774
No 53
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.86 E-value=1.5e-07 Score=103.94 Aligned_cols=315 Identities=12% Similarity=0.086 Sum_probs=198.4
Q ss_pred hHHHHHccccCCCCcchHHHHHHHHHHHhccccc---cchhhchHHHHHHhhcCC--CHHHHHHHHHHHHHHHhCCchhH
Q 012448 41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG---ASLIPHYMPFVQVGLTAD--SHSVKRLACKTVTCLLEDSDLEA 115 (463)
Q Consensus 41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~---~~l~~~~~~~l~~gL~h~--~~~Vr~Lal~~l~~i~~~~~~~~ 115 (463)
+|.|+.++++.+.++..++.+..+|..+.....+ ....+.+.+.+..++.++ ++.||..+++.++.++..-+.
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~-- 207 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA-- 207 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH--
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH--
Confidence 5777888876510267788888888888765433 234455678889999998 799999999999998875411
Q ss_pred HHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC-ccccccCCCcchhhHhhHhhcCCchhHHHHHHHHH
Q 012448 116 SCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG-IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIV 194 (463)
Q Consensus 116 ~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~-l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v 194 (463)
. .........+++.+...+.+++..+...|...|..+++..+. +...+...+++ .+.......++.+|..+++++.
T Consensus 208 ~-~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~v~~~al~~l~ 284 (876)
T 1qgr_A 208 N-FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA--ITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp H-HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHH--HHHHHHTCSSHHHHHHHHHHHH
T ss_pred H-HHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHhcCCchHHHHHHHHHHH
Confidence 1 111111113677778888999999999999999999876542 22112223444 3433455678899999999999
Q ss_pred HHHhcCHHHH------------------HHH--HhhccHHHHHhhcCC------CCcHHHHHhHHHHHHHHHhhHHHHHH
Q 012448 195 KLFSVSRSVA------------------SVI--FKANLLTLLEEGVSK------KNDTLETLSILELLYELAEIQHSAEF 248 (463)
Q Consensus 195 ~ia~~S~~~~------------------~~v--~~sgl~~~ll~eL~~------~~DvLv~lnalell~eLa~t~~g~~~ 248 (463)
.+++...+.. ... .-..+++.++..+.. .+|.-+|..+++++..++..-.. .
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~- 362 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-D- 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-G-
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-h-
Confidence 9987642110 000 013456666666642 14567899999999999984221 1
Q ss_pred HHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccc-hhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHH
Q 012448 249 LSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSH-MFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALG 327 (463)
Q Consensus 249 L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~-~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG 327 (463)
+. ..++..+...+.+ .++-+|..++.+.|.+.. +.- ..+ ...++.++..++..+.++++.++..|+|++|
T Consensus 363 ~~-~~~l~~l~~~l~~--~~~~~r~~a~~~l~~i~~--~~~~~~~----~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~ 433 (876)
T 1qgr_A 363 IV-PHVLPFIKEHIKN--PDWRYRDAAVMAFGCILE--GPEPSQL----KPLVIQAMPTLIELMKDPSVVVRDTAAWTVG 433 (876)
T ss_dssp GH-HHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSS--SSCHHHH----HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHccC--CChHHHHHHHHHHHHHHc--CCCHHHH----HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 11 1345555555543 567778777777777764 211 111 1224455555666677888999999999999
Q ss_pred hhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchh--hHhHHhhhHHHhc
Q 012448 328 QIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGK--QLAALHGLANIAG 375 (463)
Q Consensus 328 ~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~--k~r~L~al~~Il~ 375 (463)
.++...... . .. .+.+..++........+.+ |.++..+++.+..
T Consensus 434 ~~~~~~~~~--~-~~-~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 434 RICELLPEA--A-IN-DVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHCGGG--T-SS-TTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCchh--c-cc-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 998732221 0 01 3445556666555555433 5566666666654
No 54
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.80 E-value=1.9e-07 Score=86.22 Aligned_cols=185 Identities=12% Similarity=0.062 Sum_probs=145.5
Q ss_pred CChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448 39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA 118 (463)
Q Consensus 39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~ 118 (463)
-.++.|+..|++.+ +..+..++..|..+-. +...+.|...|+++++.||..+++.++++-.
T Consensus 19 ~~~~~L~~~L~~~~--~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDS--YYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 79 (211)
T ss_dssp GGHHHHHHHTTCSS--HHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------
T ss_pred hHHHHHHHHHcCCC--HHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 34788999998765 7888888888888721 3567888999999999999999999999621
Q ss_pred HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448 119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS 198 (463)
Q Consensus 119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~ 198 (463)
++.++.++.++.|++..|...|+.+|.+++. +..++ .|.+.+.+.+..+|..+...+.++..
T Consensus 80 ------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~--~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 80 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVE--PLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHH--HHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHH--HHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 2467888889999999999999999999863 23455 67768888999999999999988853
Q ss_pred cCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhH
Q 012448 199 VSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMI 278 (463)
Q Consensus 199 ~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili 278 (463)
...++.++..+++ +|.-||..+++.|..+.. ...+..|...+.+ .||.+|..+.-.
T Consensus 142 -----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d--~~~~vr~~A~~a 197 (211)
T 3ltm_A 142 -----------ERAVEPLIKALKD-EDGWVRQSAADALGEIGG----------ERVRAAMEKLAET--GTGFARKVAVNY 197 (211)
T ss_dssp -----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH--CCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 2567888888988 999999999999998853 3455666666664 678888777777
Q ss_pred hhhhcc
Q 012448 279 SGRLLS 284 (463)
Q Consensus 279 ~g~i~~ 284 (463)
.+.+..
T Consensus 198 L~~~~~ 203 (211)
T 3ltm_A 198 LETHKS 203 (211)
T ss_dssp HHC---
T ss_pred HHhcCC
Confidence 776665
No 55
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.74 E-value=5.1e-07 Score=82.57 Aligned_cols=183 Identities=12% Similarity=0.062 Sum_probs=143.6
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHH
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCAL 119 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~ 119 (463)
..+.++..|++.+ +..+..++..|..+-. +...+.|...|+++++.||..+++.++++- .
T Consensus 15 ~~~~~i~~L~~~~--~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--~-------- 74 (201)
T 3ltj_A 15 KVEMYIKNLQDDS--YYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--D-------- 74 (201)
T ss_dssp HHHHHHHHTTCSC--HHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C--------
T ss_pred chHHHHHHhcCCC--HHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--C--------
Confidence 4678899998876 8888888888888721 346788899999999999999999999852 1
Q ss_pred HHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhc
Q 012448 120 QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSV 199 (463)
Q Consensus 120 ~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~ 199 (463)
++.++.++..+.|++..|...|+.+|..+.. +..++ .|.+.+.+.+..+|..+...+.++..
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~--~L~~~l~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVE--PLIKALKDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHH--HHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHH--HHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence 2457888889999999999999999998853 23455 66667788899999999999988853
Q ss_pred CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHh
Q 012448 200 SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMIS 279 (463)
Q Consensus 200 S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~ 279 (463)
.+.++.+...+++ +|.-||..+++.|..+.. ...+..|...+.+ .||.+|..+.-..
T Consensus 137 ----------~~~~~~L~~~l~d-~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d--~~~~vr~~A~~aL 193 (201)
T 3ltj_A 137 ----------ERAVEPLIKALKD-EDGWVRQSAADALGEIGG----------ERVRAAMEKLAET--GTGFARKVAVNYL 193 (201)
T ss_dssp ----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH--CCHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 3678888889999 999999999999998843 2355566666654 5777776666665
Q ss_pred hhhc
Q 012448 280 GRLL 283 (463)
Q Consensus 280 g~i~ 283 (463)
+.+.
T Consensus 194 ~~l~ 197 (201)
T 3ltj_A 194 ETHK 197 (201)
T ss_dssp HHCC
T ss_pred HHHH
Confidence 5544
No 56
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.72 E-value=1.4e-07 Score=90.54 Aligned_cols=177 Identities=16% Similarity=0.074 Sum_probs=145.8
Q ss_pred hHHHHHHhhcCCCH--HHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448 81 YMPFVQVGLTADSH--SVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN 158 (463)
Q Consensus 81 ~~~~l~~gL~h~~~--~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~ 158 (463)
-.+.++..|.++++ .|+..+++.+..+..++ .. ..+.+.+.|.+|.++..|..++..+...|+.+|..|+...+
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~---~~-~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK---SE-ARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC---HH-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC---cH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 37889999999999 99999999999988766 45 66788899999999999999999999999999999998654
Q ss_pred -CccccccCCCcchhhHhhHhh-cCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcC---------------
Q 012448 159 -GIDIIFPADNKAATDLGNLVA-QCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVS--------------- 221 (463)
Q Consensus 159 -~l~~l~~~~~~~~~~L~~~~~-~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~--------------- 221 (463)
.-..|...+.++ .|.+++. ..+..+|-.+...+-+++.+.. .-..+++. -++.++..+.
T Consensus 85 ~nk~~I~~~GaI~--~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 85 DNKLEVAELNGVP--RLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMITE-ALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp HHHHHHHHTTHHH--HHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred HHHHHHHHcCCHH--HHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHhc-cHHHHHHHHhccccCCccccccccc
Confidence 446788999998 8887776 4688999999999999987643 33444444 4777776542
Q ss_pred CCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhc-chHHHHHHHhccc
Q 012448 222 KKNDTLETLSILELLYELAE-IQHSAEFLSRT-TLLQLLCSLIGNS 265 (463)
Q Consensus 222 ~~~DvLv~lnalell~eLa~-t~~g~~~L~~~-gi~~~L~~~i~~~ 265 (463)
+..|.-++-|+..+|+-|+. .+++.+-|.+. |+++.|+.++...
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~ 206 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGT 206 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhh
Confidence 11488999999999999998 67899989875 7789999999864
No 57
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.69 E-value=5.5e-07 Score=104.40 Aligned_cols=269 Identities=13% Similarity=0.071 Sum_probs=179.9
Q ss_pred CChHHHHHccccCCCCcchHHHHHHHHHHHhccccc---cchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhH
Q 012448 39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG---ASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEA 115 (463)
Q Consensus 39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~---~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~ 115 (463)
+.++.|+..+.+.+ +..+..+..-|...+..... .....++.+.+..+|.++++.||..|+..++.+++.... .
T Consensus 6 ~~l~~lL~~l~s~d--~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~ 82 (1230)
T 1u6g_C 6 YHISNLLEKMTSSD--KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-Y 82 (1230)
T ss_dssp HHHHHHHHHTTCSS--HHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-H
T ss_pred hHHHHHHHhcCCCC--HhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-H
Confidence 34778888888765 77888887766666543211 123456788899999999999999999999999876522 1
Q ss_pred HHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc------cccccCCCcchhhHhhHhh-cCCchhHHH
Q 012448 116 SCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI------DIIFPADNKAATDLGNLVA-QCSSLGRVR 188 (463)
Q Consensus 116 ~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l------~~l~~~~~~~~~~L~~~~~-~~~~~vR~R 188 (463)
. . ..+++.++.++.|++..+...|..+|+.++..-..- ..-+.+.+++ .|.+.+. +.+..+|.-
T Consensus 83 ~-~------~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp--~L~~~l~~~~~~~~~~~ 153 (1230)
T 1u6g_C 83 Q-V------ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITG--RLTSAIAKQEDVSVQLE 153 (1230)
T ss_dssp H-H------HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHH--HHHHHHSCCSCHHHHHH
T ss_pred H-H------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHH--HHHHHHcCCCchHHHHH
Confidence 1 1 247888899999999999999999999997654311 0011223444 5554555 467789999
Q ss_pred HHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccc
Q 012448 189 VLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATE 268 (463)
Q Consensus 189 v~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~d 268 (463)
+++++.+++....+.+.. .-..+++.++..+.+ ++.-+|..++..+..++..... ++ -..+++.+.+.+.+..+
T Consensus 154 al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~~~-~~--~~~~l~~l~~~L~~~~~- 227 (1230)
T 1u6g_C 154 ALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGN-IV--FVDLIEHLLSELSKNDS- 227 (1230)
T ss_dssp HHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCS-
T ss_pred HHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhcCH-HH--HHHHHHHHHHHhccCCc-
Confidence 999999998654332221 113688888899998 8999999999999999983221 12 23567788887776433
Q ss_pred hhhhhhhhhHhhhhcc-ccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCC
Q 012448 269 TILRSRAIMISGRLLS-KDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSS 332 (463)
Q Consensus 269 pl~r~~aili~g~i~~-f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss 332 (463)
+-.|.-++.+.|.+.. .+.. |. ...+.++..+++.+.+.++..+..|++++|.++..
T Consensus 228 ~~~r~~a~~~l~~l~~~~~~~--~~-----~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 228 MSTTRTYIQCIAAISRQAGHR--IG-----EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp SCSCTTHHHHHHHHHHHSSGG--GT-----TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHhHHH--HH-----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3345455555555443 1221 11 11122333333445677889999999999998874
No 58
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.64 E-value=3.4e-06 Score=91.74 Aligned_cols=184 Identities=12% Similarity=0.043 Sum_probs=132.6
Q ss_pred CChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448 39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA 118 (463)
Q Consensus 39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~ 118 (463)
+-.+.++.++++++ ...++.+-..+..+++ ...++.--....++..|+|+++.+|.+|++.++++. . .. .
T Consensus 74 ~~~~~vvkl~~s~~--~~~Krl~YL~l~~~~~--~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~---~e-~ 143 (621)
T 2vgl_A 74 FGHMEAVNLLSSNR--YTEKQIGYLFISVLVN--SNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG--S---RE-M 143 (621)
T ss_dssp SCHHHHHHGGGCSC--HHHHHHHHHHHHHSCC--CCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC--C---HH-H
T ss_pred hhHHHHHHHhcCCC--HHHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC--C---HH-H
Confidence 34577778887765 4455555557777743 333444446889999999999999999999999983 2 33 4
Q ss_pred HHHhhccCcHHHHHHhh--cCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448 119 LQLLIDYEIYPLLLDCL--INGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL 196 (463)
Q Consensus 119 ~~~~~~~~l~~~li~~l--~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i 196 (463)
++ .+++.|..|+ .|++..|.+.|+-++.++.+..|.+ +-+++..+ .|.+.+...|..|+.-+..++.+|
T Consensus 144 ~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~--~~~~~~~~--~l~~lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 144 AE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL--VPMGDWTS--RVVHLLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp HH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG--CCCCSCHH--HHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh--cCchhHHH--HHHHHhCCCCccHHHHHHHHHHHH
Confidence 43 4677888999 9999999999999999998876643 22246666 888888888999999999999999
Q ss_pred HhcCHHHHHHHHhh--ccHHHHHhh--cC-C------CCcHHHHHhHHHHHHHHHh
Q 012448 197 FSVSRSVASVIFKA--NLLTLLEEG--VS-K------KNDTLETLSILELLYELAE 241 (463)
Q Consensus 197 a~~S~~~~~~v~~s--gl~~~ll~e--L~-~------~~DvLv~lnalell~eLa~ 241 (463)
+..+++.+..++.. .++..++.. .. . ..|...|...+++++.++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~ 270 (621)
T 2vgl_A 215 AQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP 270 (621)
T ss_dssp HHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSS
T ss_pred HHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCC
Confidence 99998854432211 122222211 10 0 1278999999999988886
No 59
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.62 E-value=3.1e-06 Score=93.50 Aligned_cols=241 Identities=16% Similarity=0.164 Sum_probs=169.3
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchH---HHHHHHHHHHHHhCC
Q 012448 80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEE---VATASMDAIKKLAGF 156 (463)
Q Consensus 80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~---va~~A~~~L~~lak~ 156 (463)
++.+.|+..+.++++.+|+.+++.++.+..+. . ....+++.|.++.|+..+.+.... +...|+.+|.+++-+
T Consensus 457 GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~----~-~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis 531 (778)
T 3opb_A 457 ELISFLKREMHNLSPNCKQQVVRIIYNITRSK----N-FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIF 531 (778)
T ss_dssp THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG----G-GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH----H-HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc
Confidence 35888999999999999999999999998764 3 455677889999999999887544 788999999999854
Q ss_pred CCCccccccC----CCcchhhHhhHhhc-CCc-------------hhHHHHHHHHHHHHhcC----HHHHHHHHhh-ccH
Q 012448 157 PNGIDIIFPA----DNKAATDLGNLVAQ-CSS-------------LGRVRVLSLIVKLFSVS----RSVASVIFKA-NLL 213 (463)
Q Consensus 157 ~~~l~~l~~~----~~~~~~~L~~~~~~-~~~-------------~vR~Rv~el~v~ia~~S----~~~~~~v~~s-gl~ 213 (463)
.+- +.+|+. ++++ -|.+++.. .+. .-++.++-.+.++|+.+ ++.-..+++. |.+
T Consensus 532 ~np-~~~f~~~~~~~aI~--pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~ 608 (778)
T 3opb_A 532 TNP-GLIFKKYSALNAIP--FLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW 608 (778)
T ss_dssp SCH-HHHSSSSCSTTHHH--HHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH
T ss_pred CCH-HHHcCCCccccchH--HHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH
Confidence 431 123321 4555 66645441 111 22888888999999997 4566667774 999
Q ss_pred HHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHH--HHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchh
Q 012448 214 TLLEEGVSKKNDTLETLSILELLYELAEIQHSA--EFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMF 291 (463)
Q Consensus 214 ~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~--~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~ 291 (463)
+.+.+.|.+ +...+|.+|+|++.-|+..+.+. +| .+ .++|
T Consensus 609 ~~L~~LL~s-~n~~VrrAA~elI~NL~~~~e~i~~k~--------------~~-~~~~---------------------- 650 (778)
T 3opb_A 609 STIENLMLD-ENVPLQRSTLELISNMMSHPLTIAAKF--------------FN-LENP---------------------- 650 (778)
T ss_dssp HHHHHGGGC-SSHHHHHHHHHHHHHHHTSGGGTGGGT--------------SC-CSSH----------------------
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHHHhCCcHHHHHHH--------------Hh-hcCc----------------------
Confidence 999999999 88999999999999888754321 11 00 0011
Q ss_pred cchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC-CHHHHHHHhhcCchhHHHHHHHHHhhc-cc-hhhHhHHh
Q 012448 292 IDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGS-SIQGATLLLLCLPPAARHVIDAAFDRQ-GH-GKQLAALH 368 (463)
Q Consensus 292 ~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~~~~~~l~~~~~~~-~~-~~k~r~L~ 368 (463)
+ ..++++.++. ++++.|...+.+|.|+|+++.+ ...-.+.+... ...+..++. ++..+ .+ +-+.|++-
T Consensus 651 --~-~~~rL~lLV~----Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~-~~gi~~Ll~-lL~~~~~~~~l~~R~~~ 721 (778)
T 3opb_A 651 --Q-SLRNFNILVK----LLQLSDVESQRAVAAIFANIATTIPLIAKELLTK-KELIENAIQ-VFADQIDDIELRQRLLM 721 (778)
T ss_dssp --H-HHHHHHHHHH----GGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTC-HHHHHHHHH-HHHHTTTCHHHHHHHHH
T ss_pred --h-hhccHHHHHH----HHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc-cccHHHHHH-HHhccCCCHHHHHHHHH
Confidence 0 2233555554 5678999999999999999965 55556666653 234444444 44443 22 33999999
Q ss_pred hhHHHhc
Q 012448 369 GLANIAG 375 (463)
Q Consensus 369 al~~Il~ 375 (463)
++.++..
T Consensus 722 ~l~NL~~ 728 (778)
T 3opb_A 722 LFFGLFE 728 (778)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999996
No 60
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.62 E-value=4.2e-07 Score=105.38 Aligned_cols=229 Identities=14% Similarity=0.172 Sum_probs=157.2
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhH--HH
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEA--SC 117 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~--~~ 117 (463)
.++.|+.+|.+.+ +..+..++.+|..+.....+ ...+.+.+.+..+|.++++.||..++..++.++....... ..
T Consensus 49 il~~Ll~~L~d~~--~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~ 125 (1230)
T 1u6g_C 49 VVKMILKLLEDKN--GEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 125 (1230)
T ss_dssp HHHHHHHHTTCSS--HHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred HHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 4567889998654 78888888899998764433 4556788999999999999999999999999987652210 00
Q ss_pred HHHHhhccCcHHHHHHhhcC-CchHHHHHHHHHHHHHhCCCC-CccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHH
Q 012448 118 ALQLLIDYEIYPLLLDCLIN-GNEEVATASMDAIKKLAGFPN-GIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVK 195 (463)
Q Consensus 118 ~~~~~~~~~l~~~li~~l~d-~d~~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ 195 (463)
.. .-.-+.++|.++.++.+ ++..+...|+.+|.++++..+ .+.. +-+..++ .|.+.+.+.+..+|.++...+..
T Consensus 126 ~~-~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~--~l~~~L~~~~~~vR~~a~~al~~ 201 (1230)
T 1u6g_C 126 LA-ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILT--CLLPQLTSPRLAVRKRTIIALGH 201 (1230)
T ss_dssp TH-HHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHH--HHGGGGGCSSHHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHH--HHHHHHcCCcHHHHHHHHHHHHH
Confidence 00 11123689999999994 889999999999999985432 2221 1123444 55556677888999999999999
Q ss_pred HHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhh-HH-HHHHHHhcchHHHHHHHhcccccchhhhh
Q 012448 196 LFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEI-QH-SAEFLSRTTLLQLLCSLIGNSATETILRS 273 (463)
Q Consensus 196 ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t-~~-g~~~L~~~gi~~~L~~~i~~~~~dpl~r~ 273 (463)
++....+.+ . ..+++.++..|.+.+|.-++..+++++..++.. +. -..|+ ..+++.+...+.+ .||-+|.
T Consensus 202 l~~~~~~~~---~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~d--~~~~vR~ 273 (1230)
T 1u6g_C 202 LVMSCGNIV---F-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCNV--DDDELRE 273 (1230)
T ss_dssp HTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHSS--CCTTTHH
T ss_pred HHHhcCHHH---H-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhcC--CCHHHHH
Confidence 998876543 1 256777777776633445688899999999983 22 11222 3678888887764 4555676
Q ss_pred hhhhHhhhhc
Q 012448 274 RAIMISGRLL 283 (463)
Q Consensus 274 ~aili~g~i~ 283 (463)
.++-..+.+.
T Consensus 274 ~a~~~l~~l~ 283 (1230)
T 1u6g_C 274 YCIQAFESFV 283 (1230)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665555543
No 61
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.58 E-value=4.3e-07 Score=87.19 Aligned_cols=197 Identities=13% Similarity=0.069 Sum_probs=144.6
Q ss_pred cCChHHHHHccccCCCCcchHHHHHHHHHHHhcccc-cc-ch-hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchh
Q 012448 38 RFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKY-GA-SL-IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLE 114 (463)
Q Consensus 38 ~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~-~~-~l-~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~ 114 (463)
...+|.++..|++.+.....+..++..|..+-.... .- .+ .....+.|+.-|.++++.||+.+++++..+..++
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~--- 83 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED--- 83 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC---
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC---
Confidence 467899999999876222444455556666522111 11 22 3356899999999999999999999999998765
Q ss_pred HHHHHHHhhccCcHHHHHHhhc-CCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhh--------------
Q 012448 115 ASCALQLLIDYEIYPLLLDCLI-NGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVA-------------- 179 (463)
Q Consensus 115 ~~~~~~~~~~~~l~~~li~~l~-d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~-------------- 179 (463)
+. -...+.++|.+|.++..|. .++.++.+.|..+|..++.+...-..|... .++ .|..++.
T Consensus 84 ~~-nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~--~Lv~ll~~p~sG~~~~~~~~~ 159 (233)
T 3tt9_A 84 ND-NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALL--TLTENIIIPFSGWPEGDYPKA 159 (233)
T ss_dssp HH-HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHH--HHCCCCCHHHHCCCGGGCCCC
T ss_pred HH-HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHH--HHHHHHhccccCCcccccccc
Confidence 44 5667888999999999998 479999999999999999887543444432 333 3332221
Q ss_pred --cCCchhHHHHHHHHHHHHhcCHHHHHHHHhh-ccHHHHHhhcCCC-----CcHHHHHhHHHHHHHHHh
Q 012448 180 --QCSSLGRVRVLSLIVKLFSVSRSVASVIFKA-NLLTLLEEGVSKK-----NDTLETLSILELLYELAE 241 (463)
Q Consensus 180 --~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~s-gl~~~ll~eL~~~-----~DvLv~lnalell~eLa~ 241 (463)
..+..++..+-.++-++++.+++.=..+.+. |+++.++.-+++. .|--.+=||+-.|+.|+.
T Consensus 160 ~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 160 NGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred cccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 1366889999999999999999998888864 8889988887641 255667788888887753
No 62
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.58 E-value=1e-05 Score=87.56 Aligned_cols=350 Identities=12% Similarity=0.121 Sum_probs=233.1
Q ss_pred hHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCC--CHHHHHHHHHHHHHHHhCCchhHH--
Q 012448 41 LSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTAD--SHSVKRLACKTVTCLLEDSDLEAS-- 116 (463)
Q Consensus 41 l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~--~~~Vr~Lal~~l~~i~~~~~~~~~-- 116 (463)
.+.|.+-|++.. -.+-|..++.-|+.+ +..++.++...-++.|..-|+.. |..+-..++..+..+....+++..
T Consensus 23 I~~L~~Rl~~~t-l~eDRR~Av~~Lk~~-sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~ 100 (651)
T 3grl_A 23 IQKLCDRVASST-LLDDRRNAVRALKSL-SKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEE 100 (651)
T ss_dssp HHHHHHHHHHCC-SHHHHHHHHHHHHHT-TTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-------
T ss_pred HHHHHHHHhhcc-chhHHHHHHHHHHHH-HHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccc
Confidence 567788887754 234466777778877 34567777777788888888876 556666688888887765432110
Q ss_pred -----------HHHH-HhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC-c-cccc-cCCCcchhhHhhHhhcC
Q 012448 117 -----------CALQ-LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG-I-DIIF-PADNKAATDLGNLVAQC 181 (463)
Q Consensus 117 -----------~~~~-~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~-l-~~l~-~~~~~~~~~L~~~~~~~ 181 (463)
..++ .+.+++-+++++.+|.++|-.+.-.|+..|+.++.+.+. . +.|. .|..++ .|...+...
T Consensus 101 ~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~--~Lv~lL~d~ 178 (651)
T 3grl_A 101 NSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVS--RLMDLLADS 178 (651)
T ss_dssp -------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHH--HHHGGGGCS
T ss_pred cccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHH--HHHHHHhCc
Confidence 0222 335678899999999999999999999999999988886 4 5566 667788 888788888
Q ss_pred CchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcH----HHHHhHHHHHHHHHh-hHHHHHHHHhcchHH
Q 012448 182 SSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDT----LETLSILELLYELAE-IQHSAEFLSRTTLLQ 256 (463)
Q Consensus 182 ~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~Dv----Lv~lnalell~eLa~-t~~g~~~L~~~gi~~ 256 (463)
.+.+|.-+.-++.++.+.+++.-..++-.|.|+.+++-++. +-. .+.-.|+.++..|.+ .+..=+|..+.|.++
T Consensus 179 rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~-Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~ 257 (651)
T 3grl_A 179 REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE-EGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQ 257 (651)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH-HTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGG
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh-cCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999998877 433 677899999999999 555667777889999
Q ss_pred HHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhh--hhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHH
Q 012448 257 LLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESS--AKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQ 334 (463)
Q Consensus 257 ~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~--~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~e 334 (463)
+|..++....+++ -|.+|-. ..++...+..+ +..... . +.+..
T Consensus 258 ~L~~LL~~~~~~~--------------------~W~~Qk~~N~~~~L~iIrlL---v~~~~~-~-----------~~t~~ 302 (651)
T 3grl_A 258 RMKPWFEVGDENS--------------------GWSAQKVTNLHLMLQLVRVL---VSPNNP-P-----------GATSS 302 (651)
T ss_dssp GGGGGGCCCSCSS--------------------CCCHHHHHHHHHHHHHHHHH---TCTTSC-H-----------HHHHH
T ss_pred HHHHHhCCCcccc--------------------ccHHHHHHHHHHHHHHHHHH---hCCCCC-C-----------CCCHH
Confidence 9976664311111 1222211 11133334322 112111 0 02223
Q ss_pred HHHHHhhcCchhHHHHHHHHHhhccc-hhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHH-hhCCCCChh--
Q 012448 335 GATLLLLCLPPAARHVIDAAFDRQGH-GKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVA-SRSSKLTPS-- 410 (463)
Q Consensus 335 Gk~~L~~~~~~~~~~~l~~~~~~~~~-~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~-~~~~~~~p~-- 410 (463)
.-+.+.+ .+.+..++...+..... ..|..|+.+++.+..-. +. .|.. + ... ..+....|.
T Consensus 303 nQ~~~~~--~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN--~~-----~Q~~--f-----a~~~vp~~~~~p~li 366 (651)
T 3grl_A 303 CQKAMFQ--CGLLQQLCTILMATGVPADILTETINTVSEVIRGC--QV-----NQDY--F-----ASVNAPSNPPRPAIV 366 (651)
T ss_dssp HHHHHHH--TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTC--HH-----HHHH--H-----HHCEESSSSCEEHHH
T ss_pred HHHHHHH--CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCC--HH-----HHHH--H-----hhccCCCCCCcChHH
Confidence 3444444 35667777766653222 23888999999987643 21 1111 1 110 001111222
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHHHhhcC-chhHHHhhh
Q 012448 411 GLFLSVL--QQAAEIRLAGYRMITGLVAR-PWCLMELCS 446 (463)
Q Consensus 411 ~~~~~~~--qpF~elr~A~~~~l~~l~~~-~Wg~~~i~~ 446 (463)
.+++++. .+-+++|+||...+++.+.. +-+|.++.+
T Consensus 367 ~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~ 405 (651)
T 3grl_A 367 VLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVS 405 (651)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 2344544 67899999999999999855 566766654
No 63
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.56 E-value=3.1e-07 Score=87.11 Aligned_cols=188 Identities=15% Similarity=0.144 Sum_probs=139.2
Q ss_pred HhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccc--cchhhchHHHHHHhhc-CCCHHHHHHHHHHHHHHHhCCc
Q 012448 36 LDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG--ASLIPHYMPFVQVGLT-ADSHSVKRLACKTVTCLLEDSD 112 (463)
Q Consensus 36 ~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~--~~l~~~~~~~l~~gL~-h~~~~Vr~Lal~~l~~i~~~~~ 112 (463)
.+.++ +.++..+++.+ -..+..+...|..+...... ..-..++.+.|...|. .+++.||..++..++.++.+-.
T Consensus 13 ~~~l~-~~l~~~l~s~~--w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 13 LSKMP-KDFYDKLEEKK--WTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp GGGSC-TTHHHHHTCSS--HHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred cccCC-HHHHhhhccCC--HHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 34444 56888887655 45666677777777654211 2223567888999995 9999999999999999986542
Q ss_pred hhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHH
Q 012448 113 LEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSL 192 (463)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el 192 (463)
. . ....+ ..+++.|+.+++|++..|...|..+|..+....+ ++ .+++ .|...+.+.|..+|..++.+
T Consensus 90 ~--~-~~~~~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~-----~ll~--~l~~~l~~~~~~vr~~~l~~ 156 (242)
T 2qk2_A 90 K--R-FSNYA--SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE-----AQQE--SIVESLSNKNPSVKSETALF 156 (242)
T ss_dssp G--G-GHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH-----HHHH--HHHHHTTCSCHHHHHHHHHH
T ss_pred h--h-HHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH-----HHHH--HHHHHHcCCChHHHHHHHHH
Confidence 1 1 11111 2489999999999999999999999999987652 22 2344 55557778899999999999
Q ss_pred HHHHHhc-CHHH--HHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhh
Q 012448 193 IVKLFSV-SRSV--ASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEI 242 (463)
Q Consensus 193 ~v~ia~~-S~~~--~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t 242 (463)
+..+... +++. ..++ ..+++.+...+.| .+.-||..|.+++..++..
T Consensus 157 l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D-~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 157 IARALTRTQPTALNKKLL--KLLTTSLVKTLNE-PDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccHHHH--HHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHH
Confidence 9996544 3441 2233 2688999999999 9999999999999999973
No 64
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.6e-06 Score=83.56 Aligned_cols=196 Identities=11% Similarity=0.056 Sum_probs=140.5
Q ss_pred HHHhcCChHHHHHccccCCCCcchHHHHHHHHHH-Hhcccccc-----chhhchHHHHHHhh-cCCCHHHHHHHHHHHHH
Q 012448 34 KFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLER-IFKTKYGA-----SLIPHYMPFVQVGL-TADSHSVKRLACKTVTC 106 (463)
Q Consensus 34 ~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~-il~~~~~~-----~l~~~~~~~l~~gL-~h~~~~Vr~Lal~~l~~ 106 (463)
++++++|- .++..+++.+ ...|+.+...|.. ++.. .+. .-..++.+.|..+| +.++..||..+++.++.
T Consensus 12 ~i~~kl~~-~f~~~l~s~~--w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~ 87 (249)
T 2qk1_A 12 TILDKLPK-DFQERITSSK--WKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVEL 87 (249)
T ss_dssp CCGGGSCT-THHHHHTCSS--HHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred hhhhhCCh-hHHHHhhcCC--HHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 45566664 6777887665 4445555556666 6532 111 11235678888999 89999999999999999
Q ss_pred HHhCCchhHHHHH-HHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccc--cCCCcchhhHhhHhhcCCc
Q 012448 107 LLEDSDLEASCAL-QLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIF--PADNKAATDLGNLVAQCSS 183 (463)
Q Consensus 107 i~~~~~~~~~~~~-~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~--~~~~~~~~~L~~~~~~~~~ 183 (463)
++++-.. .... ... ..++|.++..++|....|...|..+|..++++.+.. ... -+.+++ .|...+.+++.
T Consensus 88 la~~l~~--~~f~~~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~-~~~~~l~~ll~--~l~~~l~~k~~ 160 (249)
T 2qk1_A 88 ICDKLKT--PGFSKDYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL-ASSGRNEDMLK--DILEHMKHKTP 160 (249)
T ss_dssp HHHHHCT--TTSCHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT-CTTCTTHHHHH--HHHHHTTCSSH
T ss_pred HHHhccc--ccccHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc-ccCCcHHHHHH--HHHHHHcCCCh
Confidence 9853310 0010 111 137899999999999999999999999998755311 111 113444 55557778899
Q ss_pred hhHHHHHHHHHHHHhcCH---HHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 184 LGRVRVLSLIVKLFSVSR---SVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 184 ~vR~Rv~el~v~ia~~S~---~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
.+|..++.++..++..+. +.+.......+++.+...+.+ .|.-||-.|.+++..++.
T Consensus 161 ~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D-~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND-TQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 999999999999998887 445444434799999999999 999999999999999987
No 65
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.36 E-value=0.00019 Score=78.02 Aligned_cols=324 Identities=11% Similarity=0.106 Sum_probs=190.7
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc
Q 012448 81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI 160 (463)
Q Consensus 81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l 160 (463)
....+...+.+++..+|+++--.+..+++.+ .. ..-+++| .+..-+++++.-+...|+.+|..+.. +.+
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~---~e-~~~L~iN-----~l~kDl~~~n~~ir~lALr~L~~i~~--~e~ 143 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN---SE-LIRLINN-----AIKNDLASRNPTFMGLALHCIANVGS--REM 143 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC---HH-HHHHHHH-----HHHHHHHSCCHHHHHHHHHHHHHHCC--HHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC---cH-HHHHHHH-----HHHHhcCCCCHHHHHHHHHHhhccCC--HHH
Confidence 4556667999999999999999999887665 33 4433322 45567889999999999999999953 222
Q ss_pred cccccCCCcchhhHhhHh--hcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHH
Q 012448 161 DIIFPADNKAATDLGNLV--AQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYE 238 (463)
Q Consensus 161 ~~l~~~~~~~~~~L~~~~--~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~e 238 (463)
. +.+.+ .+.+.+ .+.++.||..+.-++.++.+++++.... .++++.+...|.+ .|..|+.+|+-++.+
T Consensus 144 ---~-~~l~~--~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~---~~~~~~l~~lL~d-~d~~V~~~a~~~l~~ 213 (621)
T 2vgl_A 144 ---A-EAFAG--EIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM---GDWTSRVVHLLND-QHLGVVTAATSLITT 213 (621)
T ss_dssp ---H-HHHTT--HHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC---CSCHHHHHHHTTC-SCHHHHHHHHHHHHH
T ss_pred ---H-HHHHH--HHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc---hhHHHHHHHHhCC-CCccHHHHHHHHHHH
Confidence 1 23444 677677 7899999999999999999999987653 5899999999999 999999999999999
Q ss_pred HHh-hHHHHHHHHhcchHHHHHHHhccccc-----------chhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHH
Q 012448 239 LAE-IQHSAEFLSRTTLLQLLCSLIGNSAT-----------ETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDG 306 (463)
Q Consensus 239 La~-t~~g~~~L~~~gi~~~L~~~i~~~~~-----------dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~ 306 (463)
++. .+....-+. ...++.|..++..... ||+.+...+-+.+.+.+.++ .-..+.+..+++.
T Consensus 214 i~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d------~~~~~~l~~~L~~ 286 (621)
T 2vgl_A 214 LAQKNPEEFKTSV-SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPED------PAVRGRLTECLET 286 (621)
T ss_dssp HHHHCHHHHTTHH-HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSS------HHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHH-HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHH
Confidence 998 444321111 1233334444433211 78866444444444443110 0012223344444
Q ss_pred HhccccC-C--------C--hhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccc-hh--hHhHHhhhHH
Q 012448 307 RLGFLQS-Q--------D--SDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGH-GK--QLAALHGLAN 372 (463)
Q Consensus 307 ~f~~~~~-~--------d--~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~-~~--k~r~L~al~~ 372 (463)
+++..++ + . ..+.-.|+.++-.++.+ ++....+++.++..+.+ .+ |.-+|+++..
T Consensus 287 il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-----------~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~ 355 (621)
T 2vgl_A 287 ILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-----------PNLLVRACNQLGQFLQHRETNLRYLALESMCT 355 (621)
T ss_dssp HHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred HHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 4433221 1 1 13333344444444322 22334455555555543 33 7788888888
Q ss_pred HhcCCCch------hhhhh---h-hhHHHHHHHHHHHHHhhCCCCChhH----HHHHHh-cCCHHHHHHHHHHHHHhhc-
Q 012448 373 IAGKTRSE------DKIIL---N-ADAEESLRHLIYEVASRSSKLTPSG----LFLSVL-QQAAEIRLAGYRMITGLVA- 436 (463)
Q Consensus 373 Il~~~r~~------~~~il---~-~~~e~~l~~~~ye~~~~~~~~~p~~----~~~~~~-qpF~elr~A~~~~l~~l~~- 436 (463)
|......+ ...++ . ++. ..++...-+..+.....+..+ -+..+. ...+++|..+.+-+..+|.
T Consensus 356 l~~~~~~~~~~~~~~~~i~~~L~~d~d-~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 356 LASSEFSHEAVKTHIETVINALKTERD-VSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp HTTCTTTHHHHHTTHHHHHHHHTTCCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHhccCCC-HhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 87654110 01111 1 111 123322223333322122222 244555 6677888777777766663
Q ss_pred ----CchhHHHh
Q 012448 437 ----RPWCLMEL 444 (463)
Q Consensus 437 ----~~Wg~~~i 444 (463)
..|++..+
T Consensus 435 ~~~~~~~~v~~L 446 (621)
T 2vgl_A 435 YAVDYTWYVDTI 446 (621)
T ss_dssp HCSSTHHHHHHH
T ss_pred cCCcHHHHHHHH
Confidence 47776533
No 66
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.31 E-value=3.9e-05 Score=83.02 Aligned_cols=297 Identities=13% Similarity=0.138 Sum_probs=210.6
Q ss_pred HHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc----------------------h--hhchHHHHHHhhc
Q 012448 35 FLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS----------------------L--IPHYMPFVQVGLT 90 (463)
Q Consensus 35 ~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~----------------------l--~~~~~~~l~~gL~ 90 (463)
-|...-++.|++.|+...++ .+.+..+|+.++....+.. + .+.....|...|+
T Consensus 56 ~Vg~~~l~~li~~L~~d~~D---~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~ 132 (651)
T 3grl_A 56 EVGIQAMEHLIHVLQTDRSD---SEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE 132 (651)
T ss_dssp HHHHHTHHHHHHHHHSCTTC---HHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT
T ss_pred HhhhhhHHHHHHHHhccccc---HHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc
Confidence 34455688999999875433 4555566666543222211 1 1223777888999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCchhHHHHHH--HhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccc-cCC
Q 012448 91 ADSHSVKRLACKTVTCLLEDSDLEASCALQ--LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIF-PAD 167 (463)
Q Consensus 91 h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~--~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~-~~~ 167 (463)
+++--||--+++-+..+..+. .. ..| ++..++-++.++..|.|+..-+...|+-.|..++++.+.+|.++ -.+
T Consensus 133 ~~df~vR~~alqlL~~L~~~r---~~-~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEn 208 (651)
T 3grl_A 133 EFDFHVRWPGVKLLTSLLKQL---GP-QVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFEN 208 (651)
T ss_dssp CCCHHHHHHHHHHHHHHHHHS---HH-HHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHhcC---cH-HHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 999999999999999999877 33 333 45577999999999999999999999999999999999886555 447
Q ss_pred CcchhhHhhHhhcCC----chhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcH-----HHHHh---HHHH
Q 012448 168 NKAATDLGNLVAQCS----SLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDT-----LETLS---ILEL 235 (463)
Q Consensus 168 ~~~~~~L~~~~~~~~----~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~Dv-----Lv~ln---alel 235 (463)
+++ .|-+++.... .++--+.+.++.++.+.++..-.+..|+|.++++..-++..++. -.-.| ++++
T Consensus 209 aFe--~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~i 286 (651)
T 3grl_A 209 AFE--RLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQL 286 (651)
T ss_dssp HHH--HHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHH
T ss_pred cHH--HHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHH
Confidence 777 6665665443 48888999999999999999999999999999999888762321 23455 7888
Q ss_pred HHHHHhh-------HHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccc---hh--cchhhhhhhHHH
Q 012448 236 LYELAEI-------QHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSH---MF--IDESSAKTVISA 303 (463)
Q Consensus 236 l~eLa~t-------~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~---~~--~~~~~~k~~p~~ 303 (463)
++=|... +..-+-+.+.|++..|++.+.......-++..++.+.|-+.- |+-. .| ++-|....-|..
T Consensus 287 IrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ir-gN~~~Q~~fa~~~vp~~~~~p~l 365 (651)
T 3grl_A 287 VRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIR-GCQVNQDYFASVNAPSNPPRPAI 365 (651)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHCEESSSSCEEHH
T ss_pred HHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHhhccCCCCCCcChH
Confidence 8887662 344567889999999999988765444457778877777554 1211 11 110001113455
Q ss_pred HHHHhccccC-CChhhhhHHHHHHHhhcC-CHHHHHHHhh
Q 012448 304 IDGRLGFLQS-QDSDECESALEALGQIGS-SIQGATLLLL 341 (463)
Q Consensus 304 l~~~f~~~~~-~d~~~~~~A~dtlG~Igs-s~eGk~~L~~ 341 (463)
+..+..++.+ +...++.+|..++..+-. +.+|+..+..
T Consensus 366 i~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~ 405 (651)
T 3grl_A 366 VVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVS 405 (651)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5545556655 446889999999999987 5566655554
No 67
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.30 E-value=7.4e-07 Score=97.98 Aligned_cols=166 Identities=14% Similarity=0.142 Sum_probs=123.7
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHH-HHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448 80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPL-LLDCLINGNEEVATASMDAIKKLAGFPN 158 (463)
Q Consensus 80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~-li~~l~d~d~~va~~A~~~L~~lak~~~ 158 (463)
++.+.|+. |+++++.+|..||++|+.++.+. . ..+++...++++. +..++.|++.+|...|..+|..|+.+..
T Consensus 35 ~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~----~-~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 35 KILPVLKD-LKSPDAKSRTTAAGAIANIVQDA----K-CRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp TTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSH----H-HHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCc----H-HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 45666655 99999999999999999998643 3 4556666677665 5578999999999999999999986531
Q ss_pred -Cc-cccccCCCcchhhHhhHhhcC-------------CchhH--------HHHHHHHHHHHhcCHHHHHHHHhhccHHH
Q 012448 159 -GI-DIIFPADNKAATDLGNLVAQC-------------SSLGR--------VRVLSLIVKLFSVSRSVASVIFKANLLTL 215 (463)
Q Consensus 159 -~l-~~l~~~~~~~~~~L~~~~~~~-------------~~~vR--------~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ 215 (463)
.. ..++..++++ .|...+.+. ....+ -.++.++..++..|.+.++.+.+++.++.
T Consensus 109 ~d~~~~l~~~~il~--~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~ 186 (684)
T 4gmo_A 109 ADFCVHLYRLDVLT--AIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILR 186 (684)
T ss_dssp HHHHHHHHHTTHHH--HHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHH
T ss_pred chHHHHHHHcChHH--HHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHH
Confidence 22 3455556655 444333211 11111 13567889999999999999999999999
Q ss_pred HHhhcCCCCcH---HHHHhHHHHHHHHHh-hHHHHHHHHhcch
Q 012448 216 LEEGVSKKNDT---LETLSILELLYELAE-IQHSAEFLSRTTL 254 (463)
Q Consensus 216 ll~eL~~~~Dv---Lv~lnalell~eLa~-t~~g~~~L~~~gi 254 (463)
++..|-+ .|. =++.+++++|+.+++ .+...+.+.+.|.
T Consensus 187 l~~~L~~-~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~ 228 (684)
T 4gmo_A 187 LLFRLIS-ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQE 228 (684)
T ss_dssp HHHHHHH-HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCS
T ss_pred HHHHHHh-cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcch
Confidence 9999866 443 489999999999999 6677777777664
No 68
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.96 E-value=0.0011 Score=61.13 Aligned_cols=220 Identities=12% Similarity=0.080 Sum_probs=154.5
Q ss_pred HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHH--HHHHHHHH
Q 012448 118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRV--RVLSLIVK 195 (463)
Q Consensus 118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~--Rv~el~v~ 195 (463)
+.+.-.|.+++..+|..|-|.-=.|.+-|+.+++.+++..|.+.. +... +|- .+.++++.+-. -+-..+-+
T Consensus 24 i~~a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~e----pl~~--kL~-vm~~ksEaIpltqeIa~a~G~ 96 (253)
T 2db0_A 24 LIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE----PMLK--KLF-SLLKKSEAIPLTQEIAKAFGQ 96 (253)
T ss_dssp HHHHHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHH----HHHH--HHH-HHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHH----HHHH--HHH-HHHhhcccCchHHHHHHHHhH
Confidence 666777888999999998887778999999999999999886621 2222 555 33356666554 45567888
Q ss_pred HHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHhcchHHHHHHHhcccccchhhhhh
Q 012448 196 LFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSRTTLLQLLCSLIGNSATETILRSR 274 (463)
Q Consensus 196 ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ 274 (463)
+++..|+.-. +..|.+...+.- .|.-.|.|..-.|.+++. .|..+- +++..|..++.+.+ ...|
T Consensus 97 la~i~Pe~v~-----~vVp~lfanyri-gd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd--~~Dk-- 161 (253)
T 2db0_A 97 MAKEKPELVK-----SMIPVLFANYRI-GDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKN--REDK-- 161 (253)
T ss_dssp HHHHCHHHHH-----HHHHHHHHHSCC-CSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSS--HHHH--
T ss_pred HHHhCHHHHH-----hhHHHHHHHHhc-CCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCC--hHHH--
Confidence 8999998866 456888888988 799999999999999999 777554 56677777777432 2223
Q ss_pred hhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHH
Q 012448 275 AIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAA 354 (463)
Q Consensus 275 aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~ 354 (463)
+-+..||.+-|.- -.++.-+|+.++|.++...|...+..|++||+.++... ++++.++...
T Consensus 162 -l~aLnFi~alGen-------~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n-----------pklRkii~~k 222 (253)
T 2db0_A 162 -LTALNFIEAMGEN-------SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN-----------DKLRKVVIKR 222 (253)
T ss_dssp -HHHHHHHHTCCTT-------THHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-----------HHHHHHHHHH
T ss_pred -HHHHHHHHHHhcc-------CccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC-----------HHHHHHHHHH
Confidence 2235676664322 12334467888888999999999999999999998843 3455555555
Q ss_pred Hhhccchh---hHhHHhhhHHHhcCCC
Q 012448 355 FDRQGHGK---QLAALHGLANIAGKTR 378 (463)
Q Consensus 355 ~~~~~~~~---k~r~L~al~~Il~~~r 378 (463)
+......+ +...-.+|+.|.-.+|
T Consensus 223 l~e~~D~S~lv~~~V~egL~rl~l~e~ 249 (253)
T 2db0_A 223 LEELNDTSSLVNKTVKEGISRLLLLEG 249 (253)
T ss_dssp HHHCCCSCHHHHHHHHHHHHHHHHC--
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHhc
Confidence 54444322 4455567776665553
No 69
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.94 E-value=0.00043 Score=70.24 Aligned_cols=206 Identities=12% Similarity=0.125 Sum_probs=144.2
Q ss_pred CCChHHHHHHhhhhccCCCCCCh--HHHHHHH----hcCCh-----HHHHH----ccccCCCCcchHHHHHHHHHHHhcc
Q 012448 7 MDDSNQLLDSASDFAYHPGVQND--AAAKKFL----DRFPL-----SVILN----TLQTKPDVPGLEDTLVVCLERIFKT 71 (463)
Q Consensus 7 ~~~~~~~~~~~~~~a~~p~~~s~--~~~~~~~----~~~~l-----~~L~~----~L~~~~~~~~~~~~~~~vL~~il~~ 71 (463)
..|-.+.+|.|+-|.+-|-...- ...+.++ .+.++ ..+|. ++++.+ ...++.+=..+..+.+.
T Consensus 21 ~~~k~~v~qe~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d--~~lKrLvYLyl~~~~~~ 98 (355)
T 3tjz_B 21 HLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSND--PTLRRMCYLTIKEMSCI 98 (355)
T ss_dssp CCCHHHHHHHGGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCC--HHHHHHHHHHHHHHTTT
T ss_pred cchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhCCC
Confidence 45777899999999998753221 1233332 33443 24444 888876 66666666688777443
Q ss_pred ccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHH
Q 012448 72 KYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIK 151 (463)
Q Consensus 72 ~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~ 151 (463)
+.+.. -+...|+.=++||+|-+|-+|++.+++|.... .++ .+.+.+-.||.|.+..|.+.|+-+..
T Consensus 99 --~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~------m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~ 164 (355)
T 3tjz_B 99 --AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDST------MLQ-----AIERYMKQAIVDKVPSVSSSALVSSL 164 (355)
T ss_dssp --SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT------THH-----HHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred --HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH------HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 55544 57899999999999999999999999985533 333 36677889999999999999999999
Q ss_pred HHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHh
Q 012448 152 KLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLS 231 (463)
Q Consensus 152 ~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~ln 231 (463)
++....|.+ +. +.+. .+++.+...|..|-+.+..++.+|..++..++... ++.+-.. .- .|.+.+.-
T Consensus 165 kL~~~~pe~---v~-~~~~--~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kL-----v~~l~~~-~l-~~~~~q~~ 231 (355)
T 3tjz_B 165 HLLKCSFDV---VK-RWVN--EAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKM-----ISKFTRH-GL-KSPFAYCM 231 (355)
T ss_dssp HHTTTCHHH---HH-TTHH--HHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHH-----HHHHHSS-CC-SCHHHHHH
T ss_pred HHhccCHHH---HH-HHHH--HHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHH-----HHHHhcC-CC-cChHHHHH
Confidence 998777643 22 4555 77878888899999999999999999887655543 2332211 11 36777766
Q ss_pred HHHHHHHHHh
Q 012448 232 ILELLYELAE 241 (463)
Q Consensus 232 alell~eLa~ 241 (463)
.+.+++.++.
T Consensus 232 llr~l~~~~~ 241 (355)
T 3tjz_B 232 MIRVASRQLE 241 (355)
T ss_dssp HHHHHTCC--
T ss_pred HHHHHHHhcc
Confidence 6666556655
No 70
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.83 E-value=0.00042 Score=65.29 Aligned_cols=186 Identities=12% Similarity=0.070 Sum_probs=134.3
Q ss_pred HHHHhhcCCchHHHHHHHHHHHHHhCCCCCc-cccccCCCcchhhHhhHhh-cCCchhHHHHHHHHHHHHhcCHHHHHHH
Q 012448 130 LLLDCLINGNEEVATASMDAIKKLAGFPNGI-DIIFPADNKAATDLGNLVA-QCSSLGRVRVLSLIVKLFSVSRSVASVI 207 (463)
Q Consensus 130 ~li~~l~d~d~~va~~A~~~L~~lak~~~~l-~~l~~~~~~~~~~L~~~~~-~~~~~vR~Rv~el~v~ia~~S~~~~~~v 207 (463)
.+...+.+.+-...+.|+..|..+.+..+++ ..-+ .++.+ .|.+.+. ..|..+|.-++.++..+++.-...++..
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~--~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVS--ALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHH--HHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHH--HHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4567888999999999999999998763333 1111 13344 5666664 8899999999999999997644444443
Q ss_pred HhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcc-cc
Q 012448 208 FKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLS-KD 286 (463)
Q Consensus 208 ~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~-f~ 286 (463)
+ ..+++.++..+.+ ...-+|-.+.+.+..+++..+- ..++..|...+.+ .+|.+|.-++-..+.+.. ++
T Consensus 96 ~-~~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~--~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 96 A-SACVPSLLEKFKE-KKPNVVTALREAIDAIYASTSL------EAQQESIVESLSN--KNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp H-HHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCC
T ss_pred H-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHcC
Confidence 3 3689999999999 8999999999999999984321 2355666666654 478888777766666543 21
Q ss_pred ccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCH
Q 012448 287 DSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSI 333 (463)
Q Consensus 287 ~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~ 333 (463)
.- +.....+|.++..++.++++.+..++.+|++++|.|+...
T Consensus 166 ~~-----~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 166 PT-----ALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp GG-----GCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CC-----CccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 10 0012346667777777888999999999999999998744
No 71
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.00024 Score=68.26 Aligned_cols=115 Identities=11% Similarity=0.151 Sum_probs=91.0
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccch---hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHH
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASL---IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS 116 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l---~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~ 116 (463)
.+|.|+..+.+.. +..++.+..+|..++....+... .+.+.+.|..+|+|+++.||+.++..+++++++......
T Consensus 105 llp~ll~~l~dkk--~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~ 182 (249)
T 2qk1_A 105 VFTPLLDRTKEKK--PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYS 182 (249)
T ss_dssp HHHHHHHGGGCCC--HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSH
T ss_pred HHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcch
Confidence 4889999999876 66778888899999876654321 446788999999999999999999999999987632101
Q ss_pred HHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC
Q 012448 117 CALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP 157 (463)
Q Consensus 117 ~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~ 157 (463)
...-.....++|.+..++.|.+.+|...|..+|..+++.-
T Consensus 183 -~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 183 -TLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp -HHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 1112233589999999999999999999999999987653
No 72
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.57 E-value=0.0079 Score=67.85 Aligned_cols=349 Identities=7% Similarity=0.029 Sum_probs=189.3
Q ss_pred hHHHHHHHHHHHhccccccchhhchHHHHHHhhcC-----CCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHH
Q 012448 57 LEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTA-----DSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLL 131 (463)
Q Consensus 57 ~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h-----~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~l 131 (463)
++..+.++|..+.... +..+.+.+.+++...|.+ ++-..|+.++..++.+++..... ....+. .+++ +
T Consensus 437 ~R~~~~~~l~~~~~~~-~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~---~~~~l~--~l~~-~ 509 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVL-NDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGE---EKRQIP--RLMR-V 509 (971)
T ss_dssp HHHHHHHHHHHHHTTC-TTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC---------CHHH--HHHH-H
T ss_pred HHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChh---hhHHHH--HHHH-H
Confidence 4566777887775533 466777788888888876 68889999999999998765211 111111 1344 3
Q ss_pred HHhhc--CCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHh
Q 012448 132 LDCLI--NGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFK 209 (463)
Q Consensus 132 i~~l~--d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~ 209 (463)
+..+. |++..|...|+.++.++++.-..-.. +-+.+++ .|-+.+ + ..|+.+++..+..+++...+.+.-..
T Consensus 510 l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l~~vl~--~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~- 582 (971)
T 2x1g_F 510 LAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YIPPAIN--LLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA- 582 (971)
T ss_dssp HHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHH--HHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH-
T ss_pred HHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHH--HHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH-
Confidence 34455 56889999999999998754211000 1112223 333333 2 67899999999999987665544322
Q ss_pred hccHHHHHhhcCCC-CcHHHHHhHHHHHHHHHhh---HHHHHHHHh--cchHHHHHHHhcccccchhhhhhhhhHhhhh-
Q 012448 210 ANLLTLLEEGVSKK-NDTLETLSILELLYELAEI---QHSAEFLSR--TTLLQLLCSLIGNSATETILRSRAIMISGRL- 282 (463)
Q Consensus 210 sgl~~~ll~eL~~~-~DvLv~lnalell~eLa~t---~~g~~~L~~--~gi~~~L~~~i~~~~~dpl~r~~aili~g~i- 282 (463)
.++++.+...+... -|.-.+..+++.+..++.. .+-..|+.+ .-++.++...+.+...++-.+...+-..+.+
T Consensus 583 ~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~ 662 (971)
T 2x1g_F 583 DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS 662 (971)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 25666666666552 3667899999999999873 344455543 2334444444333221221111111111111
Q ss_pred ---ccccccc------hhcchh---hhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHH
Q 012448 283 ---LSKDDSH------MFIDES---SAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHV 350 (463)
Q Consensus 283 ---~~f~~~~------~~~~~~---~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~ 350 (463)
...+... .|..++ .....-+++..+++. ...|+.+.+.|.+.+|.+..+. |+. ..+-+..+
T Consensus 663 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~v~e~~~~~~~~~~~~~-~~~-----~~p~l~~~ 735 (971)
T 2x1g_F 663 TLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM-WVEEIDVLEAACSAMKHAITNL-RSS-----FQPMLQDL 735 (971)
T ss_dssp HHHHHHTC-------------CCHHHHHTTHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHH-HC-------CTHHHHH
T ss_pred HHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHhh-hhh-----ccccHHHH
Confidence 1100000 000011 112222333334432 2346788999999999876543 332 23445666
Q ss_pred HHHHHhhccchhhHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-c-------CCHH
Q 012448 351 IDAAFDRQGHGKQLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-Q-------QAAE 422 (463)
Q Consensus 351 l~~~~~~~~~~~k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-q-------pF~e 422 (463)
+..+.....+..-..++..++.+...-+.+ .+....+..+. +.+.. .++.+. + ..||
T Consensus 736 ~~~l~~~~~~~~~~~~l~l~~~~i~~~~~~------~~~~~~l~~~~-~~~~~--------~~~~~l~~~~~~~~~~~pd 800 (971)
T 2x1g_F 736 CLFIVASFQTRCCAPTLEISKTAIVMFFKD------EGCKPLMQQLL-REFIQ--------HSFKLFESTPEQNFSNISD 800 (971)
T ss_dssp HHHHHHHCC--CCHHHHHHHHHHHTTCCC-----------HHHHHHH-HHHHH--------HHHHHHTSCTTTHHHHTHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhCCC------cchHHHHHHHH-HHHHH--------HHHHHHhcccccCCccCch
Confidence 666655555433345777777777743221 11111233333 43322 222222 2 3899
Q ss_pred HHHHHHHHHHHhhcCchhH
Q 012448 423 IRLAGYRMITGLVARPWCL 441 (463)
Q Consensus 423 lr~A~~~~l~~l~~~~Wg~ 441 (463)
++.+.|+++..+..+-|..
T Consensus 801 ~~~~~f~ll~~~l~~~p~~ 819 (971)
T 2x1g_F 801 TMETFFGCLTQIIKKIPQV 819 (971)
T ss_dssp HHHHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHHHHHHHHhCcHH
Confidence 9999999999999887763
No 73
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.46 E-value=9.6e-06 Score=69.66 Aligned_cols=122 Identities=11% Similarity=0.073 Sum_probs=81.9
Q ss_pred hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCC
Q 012448 77 LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGF 156 (463)
Q Consensus 77 l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~ 156 (463)
..+.+.+.+...|+++++.||..+++.++++ . .. . ++.++.++.|++..|...|+.+|..++.
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~---~---~~---------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~- 71 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRM---G---DE---------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD- 71 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSC---S---ST---------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS-
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHh---C---ch---------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC-
Confidence 3445677888889999999999998888763 2 11 1 4777788889999999999988887752
Q ss_pred CCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHH
Q 012448 157 PNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELL 236 (463)
Q Consensus 157 ~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell 236 (463)
+..++ .|.+.+.+.+..||..+...+.++.. ...++.++..+++ +|..||..+++-|
T Consensus 72 ---------~~a~~--~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d-~~~~vr~~A~~aL 128 (131)
T 1te4_A 72 ---------ERAVE--PLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAET-GTGFARKVAVNYL 128 (131)
T ss_dssp ---------HHHHH--HHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTS-CCTHHHHHHHHHG
T ss_pred ---------HHHHH--HHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhC-CCHHHHHHHHHHH
Confidence 23344 56667778888999998888888752 2346667777778 8888998888766
Q ss_pred HH
Q 012448 237 YE 238 (463)
Q Consensus 237 ~e 238 (463)
.+
T Consensus 129 ~~ 130 (131)
T 1te4_A 129 ET 130 (131)
T ss_dssp GG
T ss_pred Hh
Confidence 43
No 74
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.33 E-value=3.8e-05 Score=65.89 Aligned_cols=118 Identities=11% Similarity=0.158 Sum_probs=80.9
Q ss_pred CChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448 39 FPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA 118 (463)
Q Consensus 39 ~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~ 118 (463)
.+.+.|...|++.+ +..+..+...|.++ +.. . .+.|...|+++++.||..+++.++++- . .
T Consensus 12 ~~~~~l~~~L~~~~--~~vR~~A~~~L~~~-----~~~---~-~~~L~~~L~d~~~~vR~~A~~aL~~~~--~---~--- 72 (131)
T 1te4_A 12 SGLVPRGSHMADEN--KWVRRDVSTALSRM-----GDE---A-FEPLLESLSNEDWRIRGAAAWIIGNFQ--D---E--- 72 (131)
T ss_dssp ---------CCSSC--CCSSSSCCSSTTSC-----SST---T-HHHHHHGGGCSCHHHHHHHHHHHGGGC--S---H---
T ss_pred ccHHHHHHHhcCCC--HHHHHHHHHHHHHh-----Cch---H-HHHHHHHHcCCCHHHHHHHHHHHHhcC--C---H---
Confidence 46778888898765 66666666666544 111 1 488899999999999999999999852 1 1
Q ss_pred HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHH
Q 012448 119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIV 194 (463)
Q Consensus 119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v 194 (463)
+.++.++.++.|++..|...|+.+|.+++. +..++ .|.+.+...+..||..+...+.
T Consensus 73 -------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~--~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 73 -------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRA--AMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp -------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHH--HHHHHTTSCCTHHHHHHHHHGG
T ss_pred -------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHH--HHHHHHhCCCHHHHHHHHHHHH
Confidence 246778888999999999999999999862 23444 6666777788888888776654
No 75
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.30 E-value=0.003 Score=63.23 Aligned_cols=182 Identities=15% Similarity=0.127 Sum_probs=146.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcc
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGID 161 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~ 161 (463)
...+...|.+.+...++-++..+.+++..+ .. .++-+++.+=+..|+..+.+.+-..=.-++.+|..+-.|..|+.
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D---~~-Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~ 195 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQED---KD-LVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGML 195 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTC---TT-HHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcc---hH-HHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcccccc
Confidence 556678888899999999999999987654 45 88889999989999999999999999999999999999998995
Q ss_pred ccc-cCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhcc----------HHHHHhhcC---CCCcHH
Q 012448 162 IIF-PADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANL----------LTLLEEGVS---KKNDTL 227 (463)
Q Consensus 162 ~l~-~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl----------~~~ll~eL~---~~~DvL 227 (463)
-++ .+.++. .+-.++...+..|-.++++++..+...|+..+..+.++== ++.++.-|. + .|.-
T Consensus 196 gvvs~~~fI~--~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~-~D~e 272 (339)
T 3dad_A 196 GVVAHSDTIQ--WLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNG-ADPE 272 (339)
T ss_dssp HHHHCHHHHH--HHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTS-CCHH
T ss_pred chhCCHHHHH--HHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCC-CCHH
Confidence 444 666666 7777777788888889999999998888766665544322 667777775 5 8999
Q ss_pred HHHhHHHHHHHHHh-hH------HHHHHHHhcchHHHHHHHhcccccchh
Q 012448 228 ETLSILELLYELAE-IQ------HSAEFLSRTTLLQLLCSLIGNSATETI 270 (463)
Q Consensus 228 v~lnalell~eLa~-t~------~g~~~L~~~gi~~~L~~~i~~~~~dpl 270 (463)
++.|++.++-.+-. .+ +-...|.+.|+-+.+...+....+||-
T Consensus 273 lq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~ 322 (339)
T 3dad_A 273 LLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVD 322 (339)
T ss_dssp HHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHH
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHH
Confidence 99999999998766 23 455677888887777777777767764
No 76
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.21 E-value=0.048 Score=55.17 Aligned_cols=272 Identities=11% Similarity=0.079 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHhccccccc-----hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHH
Q 012448 58 EDTLVVCLERIFKTKYGAS-----LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLL 132 (463)
Q Consensus 58 ~~~~~~vL~~il~~~~~~~-----l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li 132 (463)
...+...+.+++-....++ ....+...+..++.++|..+|+++--.+..+.+.. +. .. + +...+.
T Consensus 41 ~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~---~e-~i-L-----v~Nsl~ 110 (355)
T 3tjz_B 41 PRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA---ED-VI-I-----VTSSLT 110 (355)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS---SC-GG-G-----GHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH---HH-HH-H-----HHHHHH
Confidence 4445555555543222222 23345677789999999999999988887766543 11 11 2 233455
Q ss_pred HhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhcc
Q 012448 133 DCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANL 212 (463)
Q Consensus 133 ~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl 212 (463)
.=+++++.-+..-|+.+|.+|.... -++ ...+ .+++.+.+.++.||.-+.=++.++....+|..+ ++
T Consensus 111 kDl~~~N~~iR~lALRtL~~I~~~~-m~~-----~l~~--~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~ 177 (355)
T 3tjz_B 111 KDMTGKEDSYRGPAVRALCQITDST-MLQ-----AIER--YMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RW 177 (355)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCTT-THH-----HHHH--HHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TT
T ss_pred hhcCCCcHhHHHHHHHHHhcCCCHH-HHH-----HHHH--HHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HH
Confidence 7789999999999999999996332 112 2333 778788899999999999999999999998753 68
Q ss_pred HHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhccc-ccchhhhhhhhhHhhhhccccccchh
Q 012448 213 LTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNS-ATETILRSRAIMISGRLLSKDDSHMF 291 (463)
Q Consensus 213 ~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~-~~dpl~r~~aili~g~i~~f~~~~~~ 291 (463)
++.+-..+.+ ++..|+.||+-++.++.+.... .+.+|+..+.+. -.+|+....-+-+.+.+.+
T Consensus 178 ~~~l~~ll~d-~n~~V~~~Al~lL~ei~~~d~~--------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~------- 241 (355)
T 3tjz_B 178 VNEAQEAASS-DNIMVQYHALGLLYHVRKNDRL--------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLE------- 241 (355)
T ss_dssp HHHHHHHTTC-SSHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------
T ss_pred HHHHHHHhcC-CCccHHHHHHHHHHHHHhhchH--------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcc-------
Confidence 8888888888 9999999999999999984211 233444444443 2478743111111112221
Q ss_pred cchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhH
Q 012448 292 IDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLA 371 (463)
Q Consensus 292 ~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~ 371 (463)
-|.+ ..-..+++.+...++...+.+.-.|+.|+=.+.+... ..+... ..++..+...-.+..|..+|+.+.
T Consensus 242 ~d~~--~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~--~~~~~a-----~~~L~~fLss~d~niryvaLr~L~ 312 (355)
T 3tjz_B 242 DEDG--SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA--KELAPA-----VSVLQLFCSSPKAALRYAAVRTLN 312 (355)
T ss_dssp -----------------CCCCCSSHHHHHHHHHHHTC-------------C-----CCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred ccch--hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH--HHHHHH-----HHHHHHHHcCCCchHHHHHHHHHH
Confidence 1101 1112344545455666666666566666655433221 222221 223333333222233888898888
Q ss_pred HHhcCC
Q 012448 372 NIAGKT 377 (463)
Q Consensus 372 ~Il~~~ 377 (463)
.|....
T Consensus 313 ~l~~~~ 318 (355)
T 3tjz_B 313 KVAMKH 318 (355)
T ss_dssp ------
T ss_pred HHHHHC
Confidence 888754
No 77
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.21 E-value=0.00093 Score=73.26 Aligned_cols=191 Identities=12% Similarity=0.048 Sum_probs=131.5
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhccccccc--hhhch-HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHH
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGAS--LIPHY-MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS 116 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~--l~~~~-~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~ 116 (463)
.+.+++..|++.+ +..+..+|..|..+....+... +.++. ...|...|.+++..||+-|+++++.+..+.+ ..
T Consensus 35 ~i~Pll~~L~S~~--~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g--~d 110 (684)
T 4gmo_A 35 KILPVLKDLKSPD--AKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE--AD 110 (684)
T ss_dssp TTHHHHHHHSSSC--CSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC--HH
T ss_pred hHHHHHHHcCCCC--HHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC--ch
Confidence 4445667898766 8889999999999864322222 33344 4557788999999999999999999987653 34
Q ss_pred HHHHHhhccCcHHHHHHhhcCCch---------------------HHHHHHHHHHHHHhCCCC-CccccccCCCcchhhH
Q 012448 117 CALQLLIDYEIYPLLLDCLINGNE---------------------EVATASMDAIKKLAGFPN-GIDIIFPADNKAATDL 174 (463)
Q Consensus 117 ~~~~~~~~~~l~~~li~~l~d~d~---------------------~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L 174 (463)
++..+.+.++++.|...+..... .++..++.+|..++.++. .++.++..+.++ .|
T Consensus 111 -~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~--~l 187 (684)
T 4gmo_A 111 -FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTIL--RL 187 (684)
T ss_dssp -HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHH--HH
T ss_pred -HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHH--HH
Confidence 67777888999999877653222 244557778888887665 345666666666 55
Q ss_pred hhHhhcCC---chhHHHHHHHHHHHHhcCHHHHHHHHhhcc---HHHHHhhcCCCCcHHHHHhHHHHHHHH
Q 012448 175 GNLVAQCS---SLGRVRVLSLIVKLFSVSRSVASVIFKANL---LTLLEEGVSKKNDTLETLSILELLYEL 239 (463)
Q Consensus 175 ~~~~~~~~---~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl---~~~ll~eL~~~~DvLv~lnalell~eL 239 (463)
...+.+.+ ..++.-+.+++..++.-+.+..+.+.+.|. +..++..-++ +|.+-.+ +.-++..+
T Consensus 188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~l-a~giL~Ni 256 (684)
T 4gmo_A 188 LFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVM-ACGVLHNV 256 (684)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHH-HHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHH-HHHHHHhH
Confidence 54554433 468999999999999999999999988774 3444444444 5554333 33444433
No 78
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.85 E-value=0.0083 Score=58.38 Aligned_cols=111 Identities=6% Similarity=0.067 Sum_probs=85.6
Q ss_pred CCChHHHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHH
Q 012448 26 VQNDAAAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVT 105 (463)
Q Consensus 26 ~~s~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~ 105 (463)
..++.++..| +|.|+.-|.++. ...++.+..+|+.+... .-.+.+.+++..|++|-|..+|+-++..++
T Consensus 124 ~~~~~ea~~~-----lP~LveKlGd~k--~~vR~~~r~il~~l~~v----~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~ 192 (266)
T 2of3_A 124 PMSQEEVSAF-----VPYLLLKTGEAK--DNMRTSVRDIVNVLSDV----VGPLKMTPMLLDALKSKNARQRSECLLVIE 192 (266)
T ss_dssp CCCHHHHHHH-----HHHHHHGGGCSS--HHHHHHHHHHHHHHHHH----HCHHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred cchHHHHHHH-----HHHHHHHhCCCh--HHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4566666665 488999998765 55788888888776432 233346788889999999999999999999
Q ss_pred HHHhCCchhHHHHHHHhhccCcH---HHHHHhhcCCchHHHHHHHHHHHHHhCC
Q 012448 106 CLLEDSDLEASCALQLLIDYEIY---PLLLDCLINGNEEVATASMDAIKKLAGF 156 (463)
Q Consensus 106 ~i~~~~~~~~~~~~~~~~~~~l~---~~li~~l~d~d~~va~~A~~~L~~lak~ 156 (463)
.+++..+ .. ....+ +.|..++.|+|.+|...|++++..+-++
T Consensus 193 ~li~~~G-----~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 193 YYITNAG-----IS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHHHC-----SG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-----CC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 9997542 11 12356 9999999999999999999999987555
No 79
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.83 E-value=0.28 Score=55.35 Aligned_cols=310 Identities=9% Similarity=0.094 Sum_probs=161.8
Q ss_pred HHHHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhC
Q 012448 31 AAKKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLED 110 (463)
Q Consensus 31 ~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~ 110 (463)
+.++.+.+. |+.+|.+.+ +..+.+++.++..+...-.|. --|.+.+.|...++.+++..++.++..+..+.++
T Consensus 81 ~~k~~ik~~----ll~~l~~~~--~~ir~~l~~~ia~ia~~d~p~-~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~ 153 (960)
T 1wa5_C 81 NNVELIKKE----IVPLMISLP--NNLQVQIGEAISSIADSDFPD-RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKR 153 (960)
T ss_dssp HHHHHHHHH----HHHHHHHSC--HHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHH----HHHHHHhCC--HHHHHHHHHHHHHHHHhhCcc-chhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 344444444 344444443 678899999999997665563 3477899999999999999999999999999874
Q ss_pred Cc---hhHH---HHHHHhhcc-----CcHHHHHHhhcCCch---------HHHHHHHHHHHHHhCCCCCccccccCCCcc
Q 012448 111 SD---LEAS---CALQLLIDY-----EIYPLLLDCLINGNE---------EVATASMDAIKKLAGFPNGIDIIFPADNKA 170 (463)
Q Consensus 111 ~~---~~~~---~~~~~~~~~-----~l~~~li~~l~d~d~---------~va~~A~~~L~~lak~~~~l~~l~~~~~~~ 170 (463)
.. .+.. ++...+... .++..+..++.+++. ++...+++++..+..+. +...+......
T Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~--~~~~~~~~~~~ 231 (960)
T 1wa5_C 154 WRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQD--IPEFFEDNIQV 231 (960)
T ss_dssp GTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSC--CCHHHHHTHHH
T ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHH
Confidence 32 0011 011111111 223334455766532 23344666666554321 11011111100
Q ss_pred -hhhHhhHhhc------CC---------chhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcC----CCCcHHHHH
Q 012448 171 -ATDLGNLVAQ------CS---------SLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVS----KKNDTLETL 230 (463)
Q Consensus 171 -~~~L~~~~~~------~~---------~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~----~~~DvLv~l 230 (463)
-..+.+.+.. .+ ..+|..+|++++.++..-++.+..... .+++..+..+. ...+.-+..
T Consensus 232 ~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~ 310 (960)
T 1wa5_C 232 GMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVS 310 (960)
T ss_dssp HHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHH
T ss_pred HHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHH
Confidence 0011212211 11 257888999999999888777754332 56666666553 124556778
Q ss_pred hHHHHHHHHHhhHHHHHHHHhcchHHHHHH-HhcccccchhhhhhhhhHhhhhcc-ccccchhcchhhhhhhHHHHHHHh
Q 012448 231 SILELLYELAEIQHSAEFLSRTTLLQLLCS-LIGNSATETILRSRAIMISGRLLS-KDDSHMFIDESSAKTVISAIDGRL 308 (463)
Q Consensus 231 nalell~eLa~t~~g~~~L~~~gi~~~L~~-~i~~~~~dpl~r~~aili~g~i~~-f~~~~~~~~~~~~k~~p~~l~~~f 308 (463)
.+++.++.+++.+...+.+.....+..|++ .+. -+|.. -...-.|-+.| -.++..-.
T Consensus 311 ~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~----------------~~m~~~~~d~e~w~~dp-----~e~i~~d~ 369 (960)
T 1wa5_C 311 KSLSFLTAVTRIPKYFEIFNNESAMNNITEQIIL----------------PNVTLREEDVELFEDDP-----IEYIRRDL 369 (960)
T ss_dssp HHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHH----------------HHHSCCGGGTTTTTTCH-----HHHHHHHH
T ss_pred HHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhH----------------HhcCCCHHHHHHHhcCH-----HHHHHhcc
Confidence 899999999886654443322244444442 211 11111 01111221111 11222221
Q ss_pred ccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccch--hhHhHHhhhHHHhc
Q 012448 309 GFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHG--KQLAALHGLANIAG 375 (463)
Q Consensus 309 ~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~--~k~r~L~al~~Il~ 375 (463)
+ .+...+.+.+|.+.|..++..-. +.++..- -+.+...+..+....... .|-.|+.+++.|..
T Consensus 370 e--~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~-l~~i~~~l~~~~~~~~~~w~~reaal~algaia~ 434 (960)
T 1wa5_C 370 E--GSDTDTRRRACTDFLKELKEKNE-VLVTNIF-LAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAI 434 (960)
T ss_dssp H--C----CHHHHHHHHHHHHHHHCH-HHHHHHH-HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHB
T ss_pred C--cccccCcHHHHHHHHHHHHHHcc-hhHHHHH-HHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHH
Confidence 2 23335788899999988887543 4444321 112233333332211111 27789999999975
No 80
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.73 E-value=0.032 Score=51.62 Aligned_cols=141 Identities=11% Similarity=0.138 Sum_probs=106.9
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC
Q 012448 80 HYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG 159 (463)
Q Consensus 80 ~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~ 159 (463)
.+.+.+-.-+.--+|..|.=....+++|++.+ +. +.. +++.-+...+.++|..=...|.+.++.++...
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIaran---P~-l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~-- 175 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKAN---PM-LMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS-- 175 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC---HH-HHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT--
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHHhC---hH-HHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC--
Confidence 34666667777779999998888899988877 44 332 35556677888999888899999999888654
Q ss_pred ccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHH
Q 012448 160 IDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYEL 239 (463)
Q Consensus 160 l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eL 239 (463)
.+.+. +.++ .|..++-..|++||..+.|.++++|..++.. . .++...+.|++| .--||+..+-|=|..+
T Consensus 176 ~~yv~--PfLp--rL~aLL~D~deiVRaSaVEtL~~lA~~npkl-R-----kii~~kl~e~~D-~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 176 FKYVN--PFLP--RIINLLHDGDEIVRASAVEALVHLATLNDKL-R-----KVVIKRLEELND-TSSLVNKTVKEGISRL 244 (253)
T ss_dssp HHHHG--GGHH--HHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH-H-----HHHHHHHHHCCC-SCHHHHHHHHHHHHHH
T ss_pred ccccC--cchH--HHHHHHcCcchhhhHHHHHHHHHHHHcCHHH-H-----HHHHHHHHHhcC-cHHHHHHHHHHHHHHH
Confidence 34333 3566 6666888899999999999999999999974 3 245567889999 7778888888888777
Q ss_pred Hhh
Q 012448 240 AEI 242 (463)
Q Consensus 240 a~t 242 (463)
+--
T Consensus 245 ~l~ 247 (253)
T 2db0_A 245 LLL 247 (253)
T ss_dssp HHC
T ss_pred HHH
Confidence 653
No 81
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.72 E-value=0.011 Score=67.82 Aligned_cols=139 Identities=12% Similarity=-0.053 Sum_probs=93.0
Q ss_pred cchHHHHHHHHHHHhcccccc---chhhchHHHHHHhhcC-----CCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccC
Q 012448 55 PGLEDTLVVCLERIFKTKYGA---SLIPHYMPFVQVGLTA-----DSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYE 126 (463)
Q Consensus 55 ~~~~~~~~~vL~~il~~~~~~---~l~~~~~~~l~~gL~h-----~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~ 126 (463)
-..+|.++.+++.+.+...+. ...+++.++|..-++| +.+.||.-++|.+||..+=-..... ..+ .
T Consensus 467 W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~L~-----~ 540 (1023)
T 4hat_C 467 WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FLR-----T 540 (1023)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-HHH-----H
T ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-HHH-----H
Confidence 457899999999998766543 3567788888887775 6778999999999996441100011 111 2
Q ss_pred cHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcccccc------CCCcc--hhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448 127 IYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFP------ADNKA--ATDLGNLVAQCSSLGRVRVLSLIVKLFS 198 (463)
Q Consensus 127 l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~------~~~~~--~~~L~~~~~~~~~~vR~Rv~el~v~ia~ 198 (463)
++..++..+.++...|+..|..++.+|+..-. +.+.. .+.++ -+.+.+....-+..-+.++|+.+..+.+
T Consensus 541 vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~--~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 541 VILKLFEFMHETHEGVQDMACDTFIKIVQKCK--YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT--HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH--HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45556678888888999999999999986421 11111 01111 0123334445677888999999999999
Q ss_pred cCH
Q 012448 199 VSR 201 (463)
Q Consensus 199 ~S~ 201 (463)
..+
T Consensus 619 ~~~ 621 (1023)
T 4hat_C 619 EER 621 (1023)
T ss_dssp TCC
T ss_pred hCC
Confidence 865
No 82
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.62 E-value=0.14 Score=57.32 Aligned_cols=172 Identities=14% Similarity=0.087 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHhccccccchhhchHHHHHHhh----cCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHH
Q 012448 57 LEDTLVVCLERIFKTKYGASLIPHYMPFVQVGL----TADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLL 132 (463)
Q Consensus 57 ~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL----~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li 132 (463)
++..+.++|+.+-.. .+..+.+.+.+.+...+ .+++...|+.++.++|.+++.......+... .+++ ++
T Consensus 423 ~r~~~~~~L~~~~~~-~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~-----~l~~-~l 495 (963)
T 2x19_B 423 YRVDISDTLMYVYEM-LGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVP-----GLIG-LI 495 (963)
T ss_dssp HHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH-----HHHH-HG
T ss_pred HHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHH-----HHHH-HH
Confidence 345566677766432 34556677788888888 7788999999999999999865221100111 1223 22
Q ss_pred HhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhcc
Q 012448 133 DCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANL 212 (463)
Q Consensus 133 ~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl 212 (463)
..+.++...|...++.++.++++.-..-.. +-+.+++ .|-+.+ .+..|+.+++..+.+++....+.+.-.. .++
T Consensus 496 ~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l~~vl~--~l~~~l--~~~~V~~~A~~al~~l~~~~~~~l~p~~-~~i 569 (963)
T 2x19_B 496 PRISISNVQLADTVMFTIGALSEWLADHPV-MINSVLP--LVLHAL--GNPELSVSSVSTLKKICRECKYDLPPYA-ANI 569 (963)
T ss_dssp GGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HHTTTHH--HHHHHT--TCGGGHHHHHHHHHHHHHHTGGGCTTTH-HHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HHHHHHH--HHHHHh--CCchHHHHHHHHHHHHHHHHHHHHHhhH-HHH
Confidence 355666788999999999988754210001 1123444 444333 2478999999999999975543322111 245
Q ss_pred HHHHHhhcCCC-CcHHHHHhHHHHHHHHHh
Q 012448 213 LTLLEEGVSKK-NDTLETLSILELLYELAE 241 (463)
Q Consensus 213 ~~~ll~eL~~~-~DvLv~lnalell~eLa~ 241 (463)
++.+...+... -+.-.+..++|.+..++.
T Consensus 570 l~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 570 VAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 55555545431 255678888999999887
No 83
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.51 E-value=0.031 Score=53.39 Aligned_cols=177 Identities=12% Similarity=0.031 Sum_probs=123.2
Q ss_pred hHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh----hHHHHHH
Q 012448 173 DLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE----IQHSAEF 248 (463)
Q Consensus 173 ~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~----t~~g~~~ 248 (463)
.|..++...|+++|.|++.++-++-|.=++.+....=..+|+.++.-+++ +|.=+.+.|+.++.-|-+ ++..+.
T Consensus 37 ~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL~~~~y~- 114 (265)
T 3b2a_A 37 LILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPMGSKTFL- 114 (265)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCBCHHHHH-
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCCCHHHHH-
Confidence 56667788999999999999999998855666665566899999999999 999999999999999988 333332
Q ss_pred HHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHh
Q 012448 249 LSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQ 328 (463)
Q Consensus 249 L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~ 328 (463)
-+...|.+.+. +.++.. ..+.+ +.+.-. ++... +|..++.+|+.+.|.|...+.+|+-+|=.
T Consensus 115 ----Kl~~aL~dlik--~~~~il--------~~eaa--e~Lgkl-kv~~~-~~~V~~~l~sLl~Skd~~vK~agl~~L~e 176 (265)
T 3b2a_A 115 ----KAAKTLVSLLE--SPDDMM--------RIETI--DVLSKL-QPLED-SKLVRTYINELVVSPDLYTKVAGFCLFLN 176 (265)
T ss_dssp ----HHHHHHHHHTT--SCCHHH--------HHHHH--HHHHHC-CBSCC-CHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhc--CCCchH--------HHHHH--HHhCcC-Ccccc-hHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 23455666666 345542 34444 111001 11222 66778888888999999999999999999
Q ss_pred hcCCHHHHHHHhhcCchhHHHHHHHHHhhccc-hh--hHhHHhhhHHHhcCC
Q 012448 329 IGSSIQGATLLLLCLPPAARHVIDAAFDRQGH-GK--QLAALHGLANIAGKT 377 (463)
Q Consensus 329 Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~-~~--k~r~L~al~~Il~~~ 377 (463)
|++.++-+..+. .++.-+-....+ .+ +-+||+++..|++.+
T Consensus 177 ia~~S~D~~i~~--------~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 177 MLNSSADSGHLT--------LILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HGGGCSSCCCGG--------GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred hhcccCCHHHHH--------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 998554333332 222222222222 23 788999999999865
No 84
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.51 E-value=0.027 Score=63.61 Aligned_cols=218 Identities=13% Similarity=-0.015 Sum_probs=130.9
Q ss_pred HHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCc
Q 012448 60 TLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGN 139 (463)
Q Consensus 60 ~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d 139 (463)
.++.-|..+ ..++-.+.+.+.|...|.+.++.+++.++-++|-+--.+.+.. +.+.+ +.. +..+.+
T Consensus 456 gAaLGLGla----~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~--ai~~L-----L~~---~~e~~~ 521 (963)
T 4ady_A 456 GASLGIGLA----AMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE--AIHDM-----FTY---SQETQH 521 (963)
T ss_dssp HHHHHHHHH----STTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH--HHHHH-----HHH---HHHCSC
T ss_pred HHHHHHHHH----hcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH--HHHHH-----HHH---HhccCc
Confidence 444455554 2233344567888888999999999999999998854333322 22221 111 334567
Q ss_pred hHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHh-hcCCchhHHHHHHHH--HHHHhcCHHHHHHHHhhccHHHH
Q 012448 140 EEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLV-AQCSSLGRVRVLSLI--VKLFSVSRSVASVIFKANLLTLL 216 (463)
Q Consensus 140 ~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~-~~~~~~vR~Rv~el~--v~ia~~S~~~~~~v~~sgl~~~l 216 (463)
..+.+.|+-.|.-+.-..+ ...+ .+.+.+ ...++.+|+-..-.+ +....-++...+ .++..+
T Consensus 522 e~vrR~aalgLGll~~g~~--------e~~~--~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq-----~LL~~~ 586 (963)
T 4ady_A 522 GNITRGLAVGLALINYGRQ--------ELAD--DLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK-----RLLHVA 586 (963)
T ss_dssp HHHHHHHHHHHHHHTTTCG--------GGGH--HHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHHhhhCCCh--------HHHH--HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHH-----HHHHHh
Confidence 7899999999987743332 2222 332233 357788887643322 222333443322 233333
Q ss_pred HhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhh
Q 012448 217 EEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESS 296 (463)
Q Consensus 217 l~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~ 296 (463)
.. + .+.-||-.|+.-|.-++-.. ...+.++++.+.+ ..||.+|.-+.+..|.+.+. +
T Consensus 587 ~~---d-~~d~VRraAViaLGlI~~g~--------~e~v~rlv~~L~~-~~d~~VR~gAalALGli~aG-n--------- 643 (963)
T 4ady_A 587 VS---D-SNDDVRRAAVIALGFVLLRD--------YTTVPRIVQLLSK-SHNAHVRCGTAFALGIACAG-K--------- 643 (963)
T ss_dssp HH---C-SCHHHHHHHHHHHHHHTSSS--------CSSHHHHTTTGGG-CSCHHHHHHHHHHHHHHTSS-S---------
T ss_pred cc---C-CcHHHHHHHHHHHHhhccCC--------HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhccC-C---------
Confidence 32 3 34446877777776665422 1345666665554 46899998888999988762 1
Q ss_pred hhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcC
Q 012448 297 AKTVISAIDGRLGFLQSQDSDECESALEALGQIGS 331 (463)
Q Consensus 297 ~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igs 331 (463)
+.+..++.+-.+....|+..+..|+-+||.||.
T Consensus 644 --~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 644 --GLQSAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp --CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred --CcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 122233333345678899999999999999997
No 85
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.45 E-value=0.026 Score=53.96 Aligned_cols=184 Identities=14% Similarity=0.140 Sum_probs=140.0
Q ss_pred ChHHHHHccccCCCCcchHHHHHHHHHHHhcccccc---chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHH
Q 012448 40 PLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA---SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEAS 116 (463)
Q Consensus 40 ~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~---~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~ 116 (463)
.+..|+..|.+.| +..+..+-.+|+.+++..++. ...+++.+-+..-+.+.|..|.-=|++.+++++++..-+..
T Consensus 34 ~l~~L~~LL~dkD--~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 34 ALFLILELAGEDD--ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHTTSSC--HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHHHHHHHHhccc--hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 5778888898766 788888888999998875443 45677899999999999999999999999999998753333
Q ss_pred HHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHH
Q 012448 117 CALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKL 196 (463)
Q Consensus 117 ~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~i 196 (463)
.... +...+.+.+.+++.-+-..|+..|..+ +-. -..+.+.. .+-.++.++|-.+|-=.+.++.+|
T Consensus 112 -~y~K-----l~~aL~dlik~~~~il~~eaae~Lgkl-kv~-----~~~~~V~~--~l~sLl~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 112 -TFLK-----AAKTLVSLLESPDDMMRIETIDVLSKL-QPL-----EDSKLVRT--YINELVVSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp -HHHH-----HHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS-----CCCHHHHH--HHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred -HHHH-----HHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc-----cchHHHHH--HHHHHHhCCChhHHHHHHHHHHHh
Confidence 2222 445666788899999999999999988 221 11233444 666688889999999999999999
Q ss_pred HhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhH
Q 012448 197 FSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQ 243 (463)
Q Consensus 197 a~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~ 243 (463)
++.|.|. +.+ .++|+.+=.-|++ +|+.++--|+..+.++...|
T Consensus 178 a~~S~D~-~i~--~~I~~eI~elL~~-eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 178 LNSSADS-GHL--TLILDEIPSLLQN-DNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp GGGCSSC-CCG--GGTTTTHHHHHTC-SCHHHHHHHHHHHHHHTTSC
T ss_pred hcccCCH-HHH--HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCc
Confidence 9999744 000 1445554445777 99999999999999988853
No 86
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.44 E-value=0.54 Score=52.51 Aligned_cols=172 Identities=16% Similarity=0.153 Sum_probs=103.7
Q ss_pred cchHHHHHHHHHHHhcccccc--chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHH
Q 012448 55 PGLEDTLVVCLERIFKTKYGA--SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLL 132 (463)
Q Consensus 55 ~~~~~~~~~vL~~il~~~~~~--~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li 132 (463)
-..++.++.++..+....... ...+++.+. ..++..+++.||.-+++.+|+..+.- .. -.+.+ ..+++.++
T Consensus 463 w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~-l~~l~~~~~~vr~~~~~~l~~~~~~l---~~-~~~~l--~~vl~~l~ 535 (963)
T 2x19_B 463 WQHTEALLYGFQSIAETIDVNYSDVVPGLIGL-IPRISISNVQLADTVMFTIGALSEWL---AD-HPVMI--NSVLPLVL 535 (963)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHH-GGGSCCCSHHHHHHHHHHHHHTHHHH---HH-CHHHH--TTTHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCchhhHHHHHHHHH-HHhCCCCcHHHHHHHHHHHHHHHHHH---Hh-CHHHH--HHHHHHHH
Confidence 456788888999986544332 233444443 23566678999999999999976532 10 01111 26888999
Q ss_pred HhhcCCchHHHHHHHHHHHHHhCCCCCccccccCC---CcchhhHhhHhhc--CCchhHHHHHHHHHHHHhcCH-HHHHH
Q 012448 133 DCLINGNEEVATASMDAIKKLAGFPNGIDIIFPAD---NKAATDLGNLVAQ--CSSLGRVRVLSLIVKLFSVSR-SVASV 206 (463)
Q Consensus 133 ~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~---~~~~~~L~~~~~~--~~~~vR~Rv~el~v~ia~~S~-~~~~~ 206 (463)
.++.+ ..|...|..+|.++++.-+ +. +.+- .+. .|.+.+.+ -+...|..+|+.+..++...+ +....
T Consensus 536 ~~l~~--~~V~~~A~~al~~l~~~~~--~~-l~p~~~~il~--~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~ 608 (963)
T 2x19_B 536 HALGN--PELSVSSVSTLKKICRECK--YD-LPPYAANIVA--VSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK 608 (963)
T ss_dssp HHTTC--GGGHHHHHHHHHHHHHHTG--GG-CTTTHHHHHH--HHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHhCC--chHHHHHHHHHHHHHHHHH--HH-HHhhHHHHHH--HHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99977 5688999999999986422 11 1111 122 33333333 356899999999999997653 33333
Q ss_pred HHhhccHHHHHhhcC----CCCc---HHHHHhHHHHHHHHHh
Q 012448 207 IFKANLLTLLEEGVS----KKND---TLETLSILELLYELAE 241 (463)
Q Consensus 207 v~~sgl~~~ll~eL~----~~~D---vLv~lnalell~eLa~ 241 (463)
..+ .+++.+...+. +..| .......++++..+++
T Consensus 609 ~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~ 649 (963)
T 2x19_B 609 NLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFT 649 (963)
T ss_dssp HHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 222 45555444432 1112 2334467777777776
No 87
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.041 Score=52.82 Aligned_cols=191 Identities=15% Similarity=0.151 Sum_probs=120.8
Q ss_pred HhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccc----cc---hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 012448 36 LDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYG----AS---LIPHYMPFVQVGLTADSHSVKRLACKTVTCLL 108 (463)
Q Consensus 36 ~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~----~~---l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~ 108 (463)
.+++|+ -.-|.+.+ |+.-++.+.. |.++|..... +. ....+.+.+..++...|..|.+.++..+..++
T Consensus 9 ~sklpl---~e~l~sk~-WK~R~eale~-l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~ 83 (278)
T 4ffb_C 9 YTTLPL---EERLTYKL-WKARLEAYKE-LNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLI 83 (278)
T ss_dssp --CCCH---HHHTTCSS-HHHHHHHHHH-HHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred hhcCCH---HHhcccCc-HHHHHHHHHH-HHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 345664 46777766 4443444433 4444432211 11 23456788999999999999999999999988
Q ss_pred hCCchhH--HHHHHHhhccCcHHHHH-HhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchh
Q 012448 109 EDSDLEA--SCALQLLIDYEIYPLLL-DCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLG 185 (463)
Q Consensus 109 ~~~~~~~--~~~~~~~~~~~l~~~li-~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~v 185 (463)
....... .......+. .+++.++ .|++++...+...|..++..+.......+. +++ .+...+.++|..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~-~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e--~l~~~l~~Knpkv 155 (278)
T 4ffb_C 84 DAFASSSLKNAHNITLIS-TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVE--LVIPFFEKKLPKL 155 (278)
T ss_dssp TTCC---CCHHHHHHHHH-HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHH--HHGGGGGCSCHHH
T ss_pred HHhhhhhcccchhHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHH--HHHHHHhccCHHH
Confidence 7542110 001111222 4666666 479999999999999999888754422222 223 5555777899999
Q ss_pred HHHHHHHHHHHHhcC-HHH--HHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 186 RVRVLSLIVKLFSVS-RSV--ASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 186 R~Rv~el~v~ia~~S-~~~--~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
|.-.+.++.++...- ... ..... ..+++.+...+.+ .|.=||-.|.+++.++-.
T Consensus 156 ~~~~l~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d-~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 156 IAAAANCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGH-GDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTC-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHH
Confidence 999999888876430 000 00000 1345566677899 999999999999999876
No 88
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.79 E-value=1.1 Score=50.97 Aligned_cols=335 Identities=11% Similarity=0.087 Sum_probs=163.0
Q ss_pred hhhchHHHHHHhhc-----CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccC----cHHHHHH--hhcCCchHHHHH
Q 012448 77 LIPHYMPFVQVGLT-----ADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYE----IYPLLLD--CLINGNEEVATA 145 (463)
Q Consensus 77 l~~~~~~~l~~gL~-----h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~----l~~~li~--~l~d~d~~va~~ 145 (463)
..+++.+++..-++ ++.|.||..+++.++|..+-- . .+++ ++..++. ++.+++..|+..
T Consensus 487 ~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~---~-------~~~~~l~~~L~~ll~~~gl~~~~~~V~~~ 556 (980)
T 3ibv_A 487 SPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFF---D-------YESAAIPALIEYFVGPRGIHNTNERVRPR 556 (980)
T ss_dssp CBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGG---G-------TCCTTHHHHHHHHTSTTTTTCCCTTTHHH
T ss_pred hhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHH---h-------cCchhHHHHHHHHhccccccCCChhHHHH
Confidence 45567788887766 899999999999999964321 0 1223 4445556 777899999999
Q ss_pred HHHHHHHHhCCCCC-ccccccCCCcchhhHhhHhhc----CC-----------------chhHHHHHHHHHHHHhcC---
Q 012448 146 SMDAIKKLAGFPNG-IDIIFPADNKAATDLGNLVAQ----CS-----------------SLGRVRVLSLIVKLFSVS--- 200 (463)
Q Consensus 146 A~~~L~~lak~~~~-l~~l~~~~~~~~~~L~~~~~~----~~-----------------~~vR~Rv~el~v~ia~~S--- 200 (463)
|..++.++++.-+. +.. +-++.+. .+.+.+.. .+ -.-+..+||.+..+.+..
T Consensus 557 a~~af~~f~~~~~~~L~~-~~~~il~--~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~ 633 (980)
T 3ibv_A 557 AWYLFYRFVKSIKKQVVN-YTESSLA--MLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLT 633 (980)
T ss_dssp HHHHHHHHHHHTTTTCSS-SHHHHHH--HTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhHHhhh-HHHHHHH--HHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCC
Confidence 99999999876542 110 0011222 33333321 11 014789999999998663
Q ss_pred HH-H---HHHHHhhccHHHHHhhcCC---CCcHHHHH-hHHHHHHHHHh-hHHH-HH---HHH-hcchHHHHHHHhcccc
Q 012448 201 RS-V---ASVIFKANLLTLLEEGVSK---KNDTLETL-SILELLYELAE-IQHS-AE---FLS-RTTLLQLLCSLIGNSA 266 (463)
Q Consensus 201 ~~-~---~~~v~~sgl~~~ll~eL~~---~~DvLv~l-nalell~eLa~-t~~g-~~---~L~-~~gi~~~L~~~i~~~~ 266 (463)
++ - ++.+. +.++..+...+.. .+|...++ -.+-.+..+++ -+++ .+ ++. =..+.+.+...+..-.
T Consensus 634 ~e~~~~~l~~ll-~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~ 712 (980)
T 3ibv_A 634 PEEQALYCDSLI-NALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMG 712 (980)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence 22 2 22222 2344444444432 12544432 22333355554 1111 00 000 0012222222333334
Q ss_pred cchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCC--HHHHHHHhhcCc
Q 012448 267 TETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSS--IQGATLLLLCLP 344 (463)
Q Consensus 267 ~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss--~eGk~~L~~~~~ 344 (463)
.++.+|.++.-...++... .+.-+..-.|.+++.+. .+-+.+.....+|-+|+|-.. .+-...|..
T Consensus 713 ~~~~irea~~~~~~r~i~~------lg~~~~p~lp~~i~~ll---~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~--- 780 (980)
T 3ibv_A 713 FNEDIRGAVRFTSGRIINV------VGPDMLPKVPQLISILL---NSIDMNELVDVLSFISQLIHIYKDNMMEITNR--- 780 (980)
T ss_dssp CSHHHHHHHHHHHHHHTTT------THHHHTTTHHHHHHHHH---HHCCTTTHHHHHHHHHHHHHHTTTTSHHHHHH---
T ss_pred CcHHHHHHHHHHHHHHHHH------ccHhHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 5666666665555555541 11112233667777653 344567788888999888652 222333332
Q ss_pred hhHHHHHHHHHhhccchh------------hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHH
Q 012448 345 PAARHVIDAAFDRQGHGK------------QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGL 412 (463)
Q Consensus 345 ~~~~~~l~~~~~~~~~~~------------k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~ 412 (463)
.+..++.+.+....... |-.-+.-+..|+...-. ..++.+..-. .. + +-+..
T Consensus 781 -ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~--~v~~s~~n~~-~l----~--------~~l~~ 844 (980)
T 3ibv_A 781 -MLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFG--SILFTEENQV-YF----D--------PLINS 844 (980)
T ss_dssp -HHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCT--GGGGSHHHHT-TH----H--------HHHHH
T ss_pred -HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCch--hhhcCCcchH-HH----H--------HHHHH
Confidence 33444444444433211 11111122222221100 0001000000 00 0 00222
Q ss_pred HHHHh--cCCHHHHHHHHHHHHHhhcCchhHHHhhhccchhHhhcC
Q 012448 413 FLSVL--QQAAEIRLAGYRMITGLVARPWCLMELCSKQEIINTVTD 456 (463)
Q Consensus 413 ~~~~~--qpF~elr~A~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 456 (463)
++.+. -|.|-.+-+++.+|.-++.. ||.... -|||-+|+.+
T Consensus 845 l~~~a~~~~d~~~~K~a~~~l~~~v~~-~~~~~~--~~gf~~f~~~ 887 (980)
T 3ibv_A 845 ILHFANLVGEPATQKSSIALVSKMVSL-WGGKDG--IAGFENFTLS 887 (980)
T ss_dssp HHHHC-----CHHHHHHHHHHHHHHHC----------CCHHHHHHH
T ss_pred HHHHhccCCChHHHHHHHHHHHHHHHH-HCCCCc--chHHHHHHHH
Confidence 33344 27788899999999999988 876543 6899999864
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.73 E-value=0.06 Score=52.28 Aligned_cols=191 Identities=13% Similarity=0.028 Sum_probs=123.2
Q ss_pred HhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHH----hhcCCCHHHHHHHHHHHHHHHhCC
Q 012448 36 LDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQV----GLTADSHSVKRLACKTVTCLLEDS 111 (463)
Q Consensus 36 ~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~----gL~h~~~~Vr~Lal~~l~~i~~~~ 111 (463)
+...--+.+...|-+.+ ......+.+.|...++. .+.++.. ..+.+.. .+.+.++.|-..++..+..++..-
T Consensus 43 ~~~~~~~~~~~~lfs~d--~k~~~~ale~L~~~l~~-~~~~~~~-~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l 118 (266)
T 2of3_A 43 LGNQAKVSLMSQLFHKD--FKQHLAALDSLVRLADT-SPRSLLS-NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELI 118 (266)
T ss_dssp HHTTBCHHHHHHHTCSC--HHHHHHHHHHHHHHHHH-CHHHHHH-THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHhcCCC--HHHHHHHHHHHHHHhhh-ChHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 34445556666666654 23333444444444332 2334433 3444444 444889999999998888876422
Q ss_pred chhHHHHHHHhhc---cCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCC-CcchhhHhhHhhcCCchhHH
Q 012448 112 DLEASCALQLLID---YEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPAD-NKAATDLGNLVAQCSSLGRV 187 (463)
Q Consensus 112 ~~~~~~~~~~~~~---~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~-~~~~~~L~~~~~~~~~~vR~ 187 (463)
. . .-.-+.+ .-++|.++..+||+...|-..+-.++..+.+ ++++. +.+ .+.+.+.++|...|.
T Consensus 119 ~---~-~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~v~~--~l~~g~ksKN~R~R~ 185 (266)
T 2of3_A 119 R---D-TETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLKMTP--MLLDALKSKNARQRS 185 (266)
T ss_dssp H---H-TTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHHHH--HHHHGGGCSCHHHHH
T ss_pred H---h-ccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHHHHH--HHHHHHccCCHHHHH
Confidence 0 0 0000111 1478999999999999999999999888763 33444 344 666678899999998
Q ss_pred HHHHHHHHHHhcCHHHHHHHHhhccH---HHHHhhcCCCCcHHHHHhHHHHHHHHHh--hHHHHHHH
Q 012448 188 RVLSLIVKLFSVSRSVASVIFKANLL---TLLEEGVSKKNDTLETLSILELLYELAE--IQHSAEFL 249 (463)
Q Consensus 188 Rv~el~v~ia~~S~~~~~~v~~sgl~---~~ll~eL~~~~DvLv~lnalell~eLa~--t~~g~~~L 249 (463)
-.++.+..+-...-- . -...+ +.+...+.| .|.-||-.|+.++.++-. ...-.+|+
T Consensus 186 e~l~~l~~li~~~G~--~---~~~~l~~~~~ia~ll~D-~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 186 ECLLVIEYYITNAGI--S---PLKSLSVEKTVAPFVGD-KDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp HHHHHHHHHHHHHCS--G---GGGGGCHHHHHGGGGGC-SSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHhcCC--C---ccccccchHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888877776433211 1 23568 999999999 999999999999998877 44444444
No 90
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.68 E-value=0.15 Score=57.43 Aligned_cols=132 Identities=14% Similarity=0.064 Sum_probs=79.4
Q ss_pred chHHHHHHHHHHHhcccccc--chhhchHHHHHHhhc--CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHH
Q 012448 56 GLEDTLVVCLERIFKTKYGA--SLIPHYMPFVQVGLT--ADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLL 131 (463)
Q Consensus 56 ~~~~~~~~vL~~il~~~~~~--~l~~~~~~~l~~gL~--h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~l 131 (463)
..++.+..++..+....... ...+++.+ +...|. .+++.||.-+++.+|+..+.-.... +.+ ..+++.+
T Consensus 479 ~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~----~~l--~~vl~~l 551 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENP----AYI--PPAINLL 551 (971)
T ss_dssp HHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--------CH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH----HHH--HHHHHHH
Confidence 46777777888884433221 23344444 334455 3589999999999999765321001 111 1366777
Q ss_pred HHhhcCCchHHHHHHHHHHHHHhCCCC-CccccccCCCcchhhHhhHhhc--CCchhHHHHHHHHHHHHhcC
Q 012448 132 LDCLINGNEEVATASMDAIKKLAGFPN-GIDIIFPADNKAATDLGNLVAQ--CSSLGRVRVLSLIVKLFSVS 200 (463)
Q Consensus 132 i~~l~d~d~~va~~A~~~L~~lak~~~-~l~~l~~~~~~~~~~L~~~~~~--~~~~vR~Rv~el~v~ia~~S 200 (463)
+.++ + ..|...|..++.++++.-. .+...+ +..+. .|.+.+.+ -+...|..+|+.+..++...
T Consensus 552 ~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~--~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 552 VRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA-DPLLN--ACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHH--HHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH-HHHHH--HHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 7888 4 5689999999999985432 111001 11222 33334444 36789999999999999864
No 91
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.55 E-value=0.14 Score=57.79 Aligned_cols=178 Identities=13% Similarity=0.124 Sum_probs=104.1
Q ss_pred chHHHHHHHHHHHhccc---c-cc-------chhhchHHHHHHhhcCC---CHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 012448 56 GLEDTLVVCLERIFKTK---Y-GA-------SLIPHYMPFVQVGLTAD---SHSVKRLACKTVTCLLEDSDLEASCALQL 121 (463)
Q Consensus 56 ~~~~~~~~vL~~il~~~---~-~~-------~l~~~~~~~l~~gL~h~---~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~ 121 (463)
..++.+..++..+.... . +. .+.+-+...+...|..+ +|.||.-+||.+|+..+.-. .. .
T Consensus 420 ~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~-~--- 493 (960)
T 1wa5_C 420 KFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KA-Q--- 493 (960)
T ss_dssp HHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HH-H---
T ss_pred HHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HH-H---
Confidence 46777777888884321 1 11 12221234566677877 99999999999999876531 11 1
Q ss_pred hhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC-------Cc-cccccCCCcc-hhhHhhHhhcCC-----chhHH
Q 012448 122 LIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN-------GI-DIIFPADNKA-ATDLGNLVAQCS-----SLGRV 187 (463)
Q Consensus 122 ~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~-------~l-~~l~~~~~~~-~~~L~~~~~~~~-----~~vR~ 187 (463)
-..+++.++.++.|++.-|...|..+|..++.+.. .. ...+.+-..+ -..|-..+...+ ....-
T Consensus 494 --l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 494 --LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp --HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred --HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 12478889999999999999999999999987521 11 1112221111 002222222211 11345
Q ss_pred HHHHHHHHHHhcCHHHHHHHHhhccHHHHHhh----cCCCCcHHHHHhHHHHHHHHHhh
Q 012448 188 RVLSLIVKLFSVSRSVASVIFKANLLTLLEEG----VSKKNDTLETLSILELLYELAEI 242 (463)
Q Consensus 188 Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~e----L~~~~DvLv~lnalell~eLa~t 242 (463)
.+++++..++....+.+.-.. ..+++.+... .++.+|...+..++|++.-++..
T Consensus 572 ~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY 629 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 777777777654332211111 0233332222 34446888888899999999885
No 92
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.85 E-value=0.48 Score=53.60 Aligned_cols=135 Identities=11% Similarity=-0.002 Sum_probs=84.5
Q ss_pred HHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhh
Q 012448 131 LLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKA 210 (463)
Q Consensus 131 li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~s 210 (463)
+-.|..|++..|.+.|+-+|..|+-..+ +..+ +.+..+....|..+|+.+-..+..++.-++. .
T Consensus 583 L~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~-rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~------ 646 (963)
T 4ady_A 583 LHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVP-RIVQLLSKSHNAHVRCGTAFALGIACAGKGL-Q------ 646 (963)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHH-HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-H------
T ss_pred HHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHH-HHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-H------
Confidence 3356778888899999999998864433 1222 1222133468999999998877777644331 1
Q ss_pred ccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHH-HHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhcc
Q 012448 211 NLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSA-EFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLS 284 (463)
Q Consensus 211 gl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~-~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~ 284 (463)
.+++.|..-..| .|..||.||+.-+..+.. +++.. .. =.++.++|.+++.+-.+||..+--+.+..|++-.
T Consensus 647 ~aid~L~~L~~D-~d~~Vrq~Ai~ALG~Ig~gtnna~~~r--va~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 647 SAIDVLDPLTKD-PVDFVRQAAMIALSMILIQQTEKLNPQ--VADINKNFLSVITNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp HHHHHHHHHHTC-SSHHHHHHHHHHHHHHSTTCCTTTCTT--HHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccC-CCHHHHHHHHHHHHHHhcCCccccchH--HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 234444445678 999999999999999887 33220 00 0234455666766656677666555555666543
No 93
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.53 E-value=0.077 Score=50.88 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=74.0
Q ss_pred ChHHHHH-ccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHH
Q 012448 40 PLSVILN-TLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCA 118 (463)
Q Consensus 40 ~l~~L~~-~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~ 118 (463)
.+|.|+. ||.+.. +..++.+..+|-.+.....+ ...+.+.+..|++|.+|.||.-++..+.+++++-+.... -
T Consensus 103 ~l~~lveK~l~~~k--~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~-~ 176 (278)
T 4ffb_C 103 WTPLLVEKGLTSSR--ATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNV-N 176 (278)
T ss_dssp HHHHHHHHTSSCCC--HHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTC-C
T ss_pred HHHHHHHHHhcCcc--HHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcC-C
Confidence 3566665 576654 45555555555554332222 234678899999999999999999999999875211000 0
Q ss_pred HHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC
Q 012448 119 LQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP 157 (463)
Q Consensus 119 ~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~ 157 (463)
..... ..+++.+..++.|.|.+|...|++++..+-++-
T Consensus 177 ~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 177 VQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred chhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 00001 134556778999999999999999999997765
No 94
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.41 E-value=0.51 Score=53.73 Aligned_cols=194 Identities=15% Similarity=0.194 Sum_probs=133.5
Q ss_pred HHHHhcCChHHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCC-HHHHHHHHHHHHHHHhCC
Q 012448 33 KKFLDRFPLSVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADS-HSVKRLACKTVTCLLEDS 111 (463)
Q Consensus 33 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~-~~Vr~Lal~~l~~i~~~~ 111 (463)
+.++=. -+|.++.++.+.. ...++.+...+..+++...|..+ ..+.+.|..+|.+.. =..|..+++.++++++..
T Consensus 90 e~~~~~-~~~~~~~~~~dk~--~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~ 165 (986)
T 2iw3_A 90 EPYIVQ-LVPAICTNAGNKD--KEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA 165 (986)
T ss_dssp HHHHHT-THHHHHHHTTCSS--HHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred ccchHH-HHHHHHHHhcCCc--hHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 444433 4899999998876 66778888888888888877655 778999999998774 689999999999999865
Q ss_pred chhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHH
Q 012448 112 DLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLS 191 (463)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~e 191 (463)
..++...+. +++|.+-.|+-|-..+|++.|.+++.+++..-...++ .+.++ .|.+-+.+++. |=+
T Consensus 166 ---~~~~~~~~~--~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~--~~~~~~~~p~~-----~~~ 230 (986)
T 2iw3_A 166 ---KDQVALRMP--ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIP--SLIQCIADPTE-----VPE 230 (986)
T ss_dssp ---HHHHHHHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHH--HHHHHHHCTTH-----HHH
T ss_pred ---HHHHHHhcc--chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHH--HHHHHhcChhh-----hHH
Confidence 332444544 5999999999999999999999999999865433221 12334 44444555544 555
Q ss_pred HHHHHHhc------CHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh----hHHHHHHHHh
Q 012448 192 LIVKLFSV------SRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE----IQHSAEFLSR 251 (463)
Q Consensus 192 l~v~ia~~------S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~----t~~g~~~L~~ 251 (463)
++-.+++. ..-++.. +.|.|...|.. ...=.+--+.-++..|++ -.+.+.||-+
T Consensus 231 ~~~~l~~~tfv~~v~~~~l~~-----~~p~l~r~l~~-~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~ 294 (986)
T 2iw3_A 231 TVHLLGATTFVAEVTPATLSI-----MVPLLSRGLNE-RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK 294 (986)
T ss_dssp HHHHHTTCCCCSCCCHHHHHH-----HHHHHHHHHTS-SSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT
T ss_pred HHHHhhcCeeEeeecchhHHH-----HHHHHHhhhcc-CcchhheeeEEEEcchhhhcCCHHHHhhhhhh
Confidence 65555543 2333333 34666667766 555555666666777776 3445566653
No 95
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.29 E-value=1.9 Score=49.01 Aligned_cols=139 Identities=12% Similarity=0.006 Sum_probs=84.8
Q ss_pred chHHHHHHHHHHHhcccccc---chhhchHHHHHHhhc-----CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCc
Q 012448 56 GLEDTLVVCLERIFKTKYGA---SLIPHYMPFVQVGLT-----ADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEI 127 (463)
Q Consensus 56 ~~~~~~~~vL~~il~~~~~~---~l~~~~~~~l~~gL~-----h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l 127 (463)
..++.++.++..+-+..... .+.+++.+++..-.. .+.+.||.-+++.+|+..+--..... .. ..+
T Consensus 468 ~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~-~l-----~~v 541 (1049)
T 3m1i_C 468 HNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FL-----RTV 541 (1049)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-HH-----HHH
T ss_pred HHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHH-HH-----HHH
Confidence 46788888998885433222 235566666665333 25677886799999975431100011 11 135
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCcccc-c-cCCCcc-----hhhHhhHhhcCCchhHHHHHHHHHHHHhcC
Q 012448 128 YPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDII-F-PADNKA-----ATDLGNLVAQCSSLGRVRVLSLIVKLFSVS 200 (463)
Q Consensus 128 ~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l-~-~~~~~~-----~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S 200 (463)
++.++.++.+++..|...|..++.++++.-+. ..+ . ..+..+ -..|...+..-+..-+..+|+.+..+++..
T Consensus 542 l~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~-~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQKCKY-HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH-HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 66777899999999999999999999875321 110 1 111112 012333444456666789999999998765
Q ss_pred H
Q 012448 201 R 201 (463)
Q Consensus 201 ~ 201 (463)
+
T Consensus 621 ~ 621 (1049)
T 3m1i_C 621 R 621 (1049)
T ss_dssp C
T ss_pred C
Confidence 4
No 96
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.94 E-value=3.1 Score=47.38 Aligned_cols=303 Identities=10% Similarity=0.132 Sum_probs=185.1
Q ss_pred HHHHHccccCCCCcchHHHHHHHHHHHhcccccc-chhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHH
Q 012448 42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGA-SLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQ 120 (463)
Q Consensus 42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~-~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~ 120 (463)
..++..|.... ......++.-+...+....+. .+..++.+.+..++..-.+. +-|+..++.+.++...... .--
T Consensus 17 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~-~e~ 91 (986)
T 2iw3_A 17 EELFQKLSVAT--ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPS-VEP 91 (986)
T ss_dssp HHHHHHHTTCC--TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTT-THH
T ss_pred HHHHhhccccc--hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCC-ccc
Confidence 34777777643 333555555555554433222 22236788899999887666 9999999999976643222 222
Q ss_pred HhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC--CccccccCCCcchhhHhhHhhc-CCchhHHHHHHHHHHHH
Q 012448 121 LLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN--GIDIIFPADNKAATDLGNLVAQ-CSSLGRVRVLSLIVKLF 197 (463)
Q Consensus 121 ~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~--~l~~l~~~~~~~~~~L~~~~~~-~~~~vR~Rv~el~v~ia 197 (463)
.++ ++++.++.+.+|.+..|.++|..++..+.+.-+ ++.. +++ .|-..+.. ..=..|+-++.++-.++
T Consensus 92 ~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~-----~~~--~~~~~~~~~~kw~~k~~~l~~~~~~~ 162 (986)
T 2iw3_A 92 YIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKA-----LLP--HLTNAIVETNKWQEKIAILAAFSAMV 162 (986)
T ss_dssp HHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHH-----HHH--HHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred chH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHH-----HHH--HHHHHhccccchHHHHHHHHHHHHHH
Confidence 333 589999999999999999999999888865433 2222 233 33323322 24568999999999999
Q ss_pred hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhhh
Q 012448 198 SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIM 277 (463)
Q Consensus 198 ~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ail 277 (463)
..+++.+....- +++|.+-.++-| .=.=|+..+.+.+..++..-.+.. =...+..|++.|.+.++-|- ++
T Consensus 163 ~~~~~~~~~~~~-~~~p~~~~~~~d-~k~~v~~~~~~~~~~~~~~~~n~d---~~~~~~~~~~~~~~p~~~~~----~~- 232 (986)
T 2iw3_A 163 DAAKDQVALRMP-ELIPVLSETMWD-TKKEVKAAATAAMTKATETVDNKD---IERFIPSLIQCIADPTEVPE----TV- 232 (986)
T ss_dssp HHSHHHHHHHHH-HHHHHHHHHTTC-SSHHHHHHHHHHHHHHGGGCCCTT---TGGGHHHHHHHHHCTTHHHH----HH-
T ss_pred HHhHHHHHHhcc-chhcchHhhccc-CcHHHHHHHHHHHHHHHhcCCCcc---hhhhHHHHHHHhcChhhhHH----HH-
Confidence 998988887764 899999999999 556678888888888887311110 12456777777776655442 01
Q ss_pred Hhhhhccccccchhcchh-hhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHh
Q 012448 278 ISGRLLSKDDSHMFIDES-SAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFD 356 (463)
Q Consensus 278 i~g~i~~f~~~~~~~~~~-~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~ 356 (463)
--+.+ -.++.-++.| ++--.|- +.+ .+.+....++--++-.++++++-++-.+-...- -+.+---+++..+
T Consensus 233 --~~l~~-~tfv~~v~~~~l~~~~p~-l~r---~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~ 304 (986)
T 2iw3_A 233 --HLLGA-TTFVAEVTPATLSIMVPL-LSR---GLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF-LGKLLPGLKSNFA 304 (986)
T ss_dssp --HHHTT-CCCCSCCCHHHHHHHHHH-HHH---HHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH-HTTTHHHHHHHTT
T ss_pred --HHhhc-CeeEeeecchhHHHHHHH-HHh---hhccCcchhheeeEEEEcchhhhcCCHHHHhhh-hhhhhhHHHHHhh
Confidence 11111 0122224455 3332333 332 345667777777788888888854433322221 1233444455555
Q ss_pred hccchh----hHhHHhhhHHHhcC
Q 012448 357 RQGHGK----QLAALHGLANIAGK 376 (463)
Q Consensus 357 ~~~~~~----k~r~L~al~~Il~~ 376 (463)
.++..- ..||++.|..+-+.
T Consensus 305 ~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 305 TIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHHHHHHhhcc
Confidence 555432 44556666555554
No 97
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.74 E-value=6.1 Score=41.30 Aligned_cols=301 Identities=11% Similarity=0.076 Sum_probs=174.1
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCc
Q 012448 81 YMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGI 160 (463)
Q Consensus 81 ~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l 160 (463)
|...| .|-+. ++.+|+||+.-|.+-..+- +. +.+ ..+-.+++.+-|+|..|...|++.|-.++|. ..+
T Consensus 31 y~~Il-~~~kg-~~k~K~LaaQ~I~kffk~F---P~-l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i 98 (507)
T 3u0r_A 31 YQVIL-DGVKG-GTKEKRLAAQFIPKFFKHF---PE-LAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENL 98 (507)
T ss_dssp HHHHH-HGGGS-CHHHHHHHHHHHHHHGGGC---GG-GHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCH
T ss_pred HHHHH-HhcCC-CHHHHHHHHHHHHHHHhhC---hh-hHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhh
Confidence 44443 45555 6999999999999999887 44 433 3455677899999999999999999999988 333
Q ss_pred cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHH
Q 012448 161 DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELA 240 (463)
Q Consensus 161 ~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa 240 (463)
. .+.+ .|.+++...+...+--|-..++++.+..+.. .=+|+|+.+.. .|..+|-.++..|.+=.
T Consensus 99 ~-----kiaD--vL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~----tl~~lf~~i~~-----~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 99 P-----RVAD--ILTQLLQTDDSAEFNLVNNALLSIFKMDAKG----TLGGLFSQILQ-----GEDIVRERAIKFLSTKL 162 (507)
T ss_dssp H-----HHHH--HHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHH-----SCHHHHHHHHHHHHHHG
T ss_pred h-----hHHH--HHHHHHhccchHHHHHHHHHHHHHHhcChHH----HHHHHHHHHcc-----cchHHHHHHHHHHHHHH
Confidence 2 2333 6665666677788888999999999998744 12367777665 46789999999887755
Q ss_pred hh--HHHHHHHHhcchHHHHHHHhcccccchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhcc------cc
Q 012448 241 EI--QHSAEFLSRTTLLQLLCSLIGNSATETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGF------LQ 312 (463)
Q Consensus 241 ~t--~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~------~~ 312 (463)
.+ +.-..-=.+.-+++.+-..+.+...+-| .|+..++... .++. .+ .+.-.+++.+.+. ++
T Consensus 163 ~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF-----~L~m~lL~~l-kl~~---t~--~g~qeLv~ii~eQa~L~~~f~ 231 (507)
T 3u0r_A 163 KTLPDEVLTKEVEELILTESKKVLEDVTGEEF-----VLFMKILSGL-KSLQ---TV--SGRQQLVELVAEQADLEQTFN 231 (507)
T ss_dssp GGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHH-----HHHHHHHHTS-GGGS---SH--HHHHHHHHHHHHHHTTTSCCC
T ss_pred hhcchhhccHHHHHHHHHHHHHHhccccHHHH-----HHHHHHHHhc-cccc---Cc--hHHHHHHHHHHHHHhccCCCC
Confidence 42 1111000122345555666666666665 2333444321 1111 10 1122233322222 12
Q ss_pred CCCh----hhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHHhhccch-----hhHhHHhhhHHHhcCCCchhhh
Q 012448 313 SQDS----DECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAFDRQGHG-----KQLAALHGLANIAGKTRSEDKI 383 (463)
Q Consensus 313 ~~d~----~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~-----~k~r~L~al~~Il~~~r~~~~~ 383 (463)
..|+ ..+.++--++-.+.+.+++-+++.- -.++++-.+ +.+... .|++-|..++.+....+..
T Consensus 232 ~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y----~~~kIlP~l-~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~--- 303 (507)
T 3u0r_A 232 PSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTY----FCEQVLPNL-GTLTTPVEGLDIQLEVLKLLAEMSSFCGDM--- 303 (507)
T ss_dssp SSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHH----HHHHTGGGT-TCCCCC--CCCHHHHHHHHHHHHHTTCCCC---
T ss_pred CcCHHHHHHHHHHHHHHHHHhccCCChHHHHHH----HHHhhccch-hhccccccchHHHHHHHHHHHHHccCCCcc---
Confidence 2332 2334444445555554444333321 223333322 222222 5999999999998865421
Q ss_pred hhhhhHHHHHHHHHHHHHhhCCCCChhHHH-----HH--HhcCCHHHHHHHHHHHH
Q 012448 384 ILNADAEESLRHLIYEVASRSSKLTPSGLF-----LS--VLQQAAEIRLAGYRMIT 432 (463)
Q Consensus 384 il~~~~e~~l~~~~ye~~~~~~~~~p~~~~-----~~--~~qpF~elr~A~~~~l~ 432 (463)
+.++. +...+|+.+-.-+-..|.+.- -+ -.-.|..+-|--|.+-+
T Consensus 304 ---e~a~~-~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~ 355 (507)
T 3u0r_A 304 ---EKLET-NLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQ 355 (507)
T ss_dssp ---TTHHH-HHHHHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHH
T ss_pred ---chHHH-HHHHHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHH
Confidence 33444 566788888775556665211 01 11247878877777433
No 98
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=92.50 E-value=9.7 Score=43.78 Aligned_cols=137 Identities=7% Similarity=-0.034 Sum_probs=88.2
Q ss_pred cchHHHHHHHHHHHhcccccc---chhhchHHHHHHhhcCC-----CHHHHHHHHHHHHHHHh---CCchhHHHHHHHhh
Q 012448 55 PGLEDTLVVCLERIFKTKYGA---SLIPHYMPFVQVGLTAD-----SHSVKRLACKTVTCLLE---DSDLEASCALQLLI 123 (463)
Q Consensus 55 ~~~~~~~~~vL~~il~~~~~~---~l~~~~~~~l~~gL~h~-----~~~Vr~Lal~~l~~i~~---~~~~~~~~~~~~~~ 123 (463)
-...+.+|.+++.+-++..+. ...+++.+.|..-.+|+ .+.|+.-.++.+|+.-+ +. .. ..+
T Consensus 493 W~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h---~~-~L~--- 565 (1073)
T 3gjx_A 493 WKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH---WK-FLK--- 565 (1073)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC---HH-HHH---
T ss_pred HHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC---HH-HHH---
Confidence 356889999999996665542 46788889998888887 35567767778877432 11 12 222
Q ss_pred ccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCC-ccccccCCCcchhhHh-------hHhhcCCchhHHHHHHHHHH
Q 012448 124 DYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNG-IDIIFPADNKAATDLG-------NLVAQCSSLGRVRVLSLIVK 195 (463)
Q Consensus 124 ~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~-l~~l~~~~~~~~~~L~-------~~~~~~~~~vR~Rv~el~v~ 195 (463)
.++..++..+.+.+.+|...|.+++.+|+..-+. +-...+....+ .+. .....-+..-....|+.+..
T Consensus 566 --~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p--~i~~il~~~~~~~~~l~~~~~~~lyeav~~ 641 (1073)
T 3gjx_A 566 --TVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMP--FIDEILNNINTIICDLQPQQVHTFYEAVGY 641 (1073)
T ss_dssp --HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSC--HHHHHHTSHHHHHTTCCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccch--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2344556778999999999999999999744321 11111222333 333 22233366777888998888
Q ss_pred HHhcCHH
Q 012448 196 LFSVSRS 202 (463)
Q Consensus 196 ia~~S~~ 202 (463)
+.+.-+.
T Consensus 642 vi~~~p~ 648 (1073)
T 3gjx_A 642 MIGAQTD 648 (1073)
T ss_dssp HHTTCCC
T ss_pred HHHhCCC
Confidence 8876554
No 99
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=91.49 E-value=2 Score=41.39 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=110.0
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHH-HhhccCcHHHHHHhhcCC-------chH--H---HHHHHHHHHHH
Q 012448 87 VGLTADSHSVKRLACKTVTCLLEDSDLEASCALQ-LLIDYEIYPLLLDCLING-------NEE--V---ATASMDAIKKL 153 (463)
Q Consensus 87 ~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~-~~~~~~l~~~li~~l~d~-------d~~--v---a~~A~~~L~~l 153 (463)
.-|..|+ -|+-|+.++++--+.- .. ++- +-...|.+..+++.|-.. ..+ . --.|...|.-+
T Consensus 10 ~~L~~p~--~Re~AL~eLsk~Re~~---~~-La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcv 83 (268)
T 2fv2_A 10 NELSSPE--TRENALLELSKKRESV---PD-LAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCV 83 (268)
T ss_dssp HHTSSTT--THHHHHHHHHHHTTTC---TT-HHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCch--hHHHHHHHHHHhhhcc---cc-HHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHH
Confidence 3344444 5999999998844432 22 333 446667776665544332 221 1 12355667888
Q ss_pred hCCCCCccccccCCCcchhhHhhHhhcCC-----chhHHHHHHHHHHHHhc-CHHHHHHHHhhccHHHHHhhcCCCCcHH
Q 012448 154 AGFPNGIDIIFPADNKAATDLGNLVAQCS-----SLGRVRVLSLIVKLFSV-SRSVASVIFKANLLTLLEEGVSKKNDTL 227 (463)
Q Consensus 154 ak~~~~l~~l~~~~~~~~~~L~~~~~~~~-----~~vR~Rv~el~v~ia~~-S~~~~~~v~~sgl~~~ll~eL~~~~DvL 227 (463)
|.|++=-..+..++.-- +|-+.+...+ +.+|.-.+.++..+.|. ++|...+..+++++|..+.-++. ...+
T Consensus 84 Ashpetr~~Fl~a~ipl--yLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~-Gsel 160 (268)
T 2fv2_A 84 ASHPETRSAFLAAHIPL--FLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMES-GSEL 160 (268)
T ss_dssp HHCTTTHHHHHHTTGGG--GTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHH-SCHH
T ss_pred HcCcchhhHHHHccchH--HhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhh-ccHH
Confidence 98885323344555543 5555554333 67788888888888776 68999999999999999999999 9999
Q ss_pred HHHhHHHHHHHHHhhHHHHHHHHhc
Q 012448 228 ETLSILELLYELAEIQHSAEFLSRT 252 (463)
Q Consensus 228 v~lnalell~eLa~t~~g~~~L~~~ 252 (463)
.|.-|.-++..+-....|.+|+.++
T Consensus 161 SKtvAtfIlqKIL~dd~GL~YiC~t 185 (268)
T 2fv2_A 161 SKTVATFILQKILLDDTGLAYICQT 185 (268)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhccchhHHHHHcc
Confidence 9999999999999999999999875
No 100
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=90.94 E-value=2.6 Score=44.03 Aligned_cols=192 Identities=16% Similarity=0.223 Sum_probs=126.8
Q ss_pred HHHHHHHHHhccccccchhhch-HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCC
Q 012448 60 TLVVCLERIFKTKYGASLIPHY-MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLING 138 (463)
Q Consensus 60 ~~~~vL~~il~~~~~~~l~~~~-~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~ 138 (463)
.+.++|+++++-.+.+.+.+-| .+++..||+..++.+..+||+-+.+ .. -..++.+.+++..++..+.++
T Consensus 95 ~Li~Ll~~il~~~~Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~~---s~------pk~lfa~t~iidiLL~lyFd~ 165 (500)
T 3vld_A 95 YLLDVVDKLVPMADFDDVLEVYSAEDLVKALRSEIDPLKVAACRVIEN---SQ------PKGLFATSNIIDILLDILFDE 165 (500)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHHT---CS------SGGGGTTSSHHHHHHHHHTCT
T ss_pred HHHHHHHHHHhcCCHHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhcc---cC------chhHhccChHHHHHHHHHcCC
Confidence 3788999999888888888766 9999999999999999999888873 22 346888999999999999999
Q ss_pred chHHH---HHHHHHHHHHhCCCCCc--cccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcC-HHHHHHHHhhcc
Q 012448 139 NEEVA---TASMDAIKKLAGFPNGI--DIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVS-RSVASVIFKANL 212 (463)
Q Consensus 139 d~~va---~~A~~~L~~lak~~~~l--~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S-~~~~~~v~~sgl 212 (463)
++.+. ...=++++.++ ..++ ..|+. +.++ .|...=.+.+.++..|.++++.-++.+= ..-+. .+-.+
T Consensus 166 ~t~i~~vvn~IE~~~~~Ls--sdeLirrril~-nnl~--lL~~vK~~~~~i~~sRLLdll~il~~~i~~~eF~--~~Lfi 238 (500)
T 3vld_A 166 KVENDKLITAIEKALERLS--TDELIRRRLFD-NNLP--YLVSVKGRMETVSFVRLIDFLTIEFQFISGPEFK--DIIFC 238 (500)
T ss_dssp TCCCHHHHHHHHHHHHHHT--TSHHHHHHHHT-TTHH--HHHHHHHHCCHHHHHHHHHHHHHHHTTCCTTTCC--HHHHC
T ss_pred CCCcHHHHHHHHHHHHHcC--chHHHHHHHHH-HhHH--HHHHHhcCCCceeHHHHHHHHHHHhcccCcccCC--cceee
Confidence 98854 54555566664 2232 23333 3445 5553333568899999999998776552 00000 00022
Q ss_pred HHH--HHhhcCCCCcHHHHHhHHHHHHHHHhh------HHHHHHHHhcchHHHHHHHhcccccchhhh
Q 012448 213 LTL--LEEGVSKKNDTLETLSILELLYELAEI------QHSAEFLSRTTLLQLLCSLIGNSATETILR 272 (463)
Q Consensus 213 ~~~--ll~eL~~~~DvLv~lnalell~eLa~t------~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r 272 (463)
|+. +..-+ +|+|+-.+.++--+.|... .+-.+++.. ++..+.++-.+-+++|-++
T Consensus 239 ~~~~Ei~k~~---dDil~fI~ii~yYtkLl~~~~~~~~~w~l~~i~p--~l~~~~~ly~~~d~~~dv~ 301 (500)
T 3vld_A 239 FTKEEILKSV---EDILVFIELVNYYTKFLLEIRNQDKYWALRHVKK--ILPVFAQLFEDTENYPDVR 301 (500)
T ss_dssp CCHHHHHHHT---TSHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHGG--GHHHHHHHHHCTTTCHHHH
T ss_pred ccHHHHHhhh---cchHHHHHHHHHHHHHHHHhcccchHHHHHHhHH--HHHHHHHHhcCchhhhHHH
Confidence 221 11122 5999999998888877653 222334433 5555555555556666654
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=90.21 E-value=3.3 Score=39.35 Aligned_cols=156 Identities=11% Similarity=0.047 Sum_probs=105.8
Q ss_pred ChHHHHHHHhcCChHHH---HHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHH-hhcCCCHHHHHHHHHH
Q 012448 28 NDAAAKKFLDRFPLSVI---LNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQV-GLTADSHSVKRLACKT 103 (463)
Q Consensus 28 s~~~~~~~~~~~~l~~L---~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~-gL~h~~~~Vr~Lal~~ 103 (463)
=++.|+..+..++.+.+ +..|-+.+ ....+-.+++.|.+. . ..+...+++.. --..++=.||+.++.+
T Consensus 56 ~~~~a~~~~~~~~~~~~~~la~~L~~~~-~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a 127 (240)
T 3l9t_A 56 EEQRALTDYKSNDGEYIKKLAFLAYQSD-VYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKA 127 (240)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhCc-chHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHH
Confidence 46778888888887744 44444332 345555667766665 2 22456667765 4556677999999998
Q ss_pred HHHHHh-CCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCC
Q 012448 104 VTCLLE-DSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCS 182 (463)
Q Consensus 104 l~~i~~-~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~ 182 (463)
++.++. .. .. .+++.+..-..|++..|.+.|+..+.--++.+ ..+ .-+..+++ .|.++....+
T Consensus 128 ~~~~~~~~~---pe---------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~-~~k-~dp~~ll~--iL~~L~~D~s 191 (240)
T 3l9t_A 128 FDEFCKKIE---YK---------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRP-YFK-ENPNEAIR--RIADLKEDVS 191 (240)
T ss_dssp HHHHHHHHC---TT---------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGST-TTT-TCHHHHHH--HHHTTTTCSC
T ss_pred HHHHHHhcC---HH---------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccc-hhh-cCHHHHHH--HHHHhcCChH
Confidence 888764 22 11 26777788999999999999999876544432 111 11222344 6666777889
Q ss_pred chhHHHHHHHHHHHHhcCHHHHHHH
Q 012448 183 SLGRVRVLSLIVKLFSVSRSVASVI 207 (463)
Q Consensus 183 ~~vR~Rv~el~v~ia~~S~~~~~~v 207 (463)
.-||.-|=.-+-.++|+.|+.....
T Consensus 192 ~yVrKSVan~LrD~SK~~Pd~V~~~ 216 (240)
T 3l9t_A 192 EYVRKSVGNALRDISKKFPDLVKIE 216 (240)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhCHHHHHHH
Confidence 9999999999999999999875543
No 102
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=89.38 E-value=2.5 Score=42.16 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=82.9
Q ss_pred HHHHhhcCCchHHHHHHHHHHHH-HhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHH
Q 012448 130 LLLDCLINGNEEVATASMDAIKK-LAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIF 208 (463)
Q Consensus 130 ~li~~l~d~d~~va~~A~~~L~~-lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~ 208 (463)
.++.-|.+.+....+.|+..|+. +.+...-.+-.+..+.+. .|.+.+...+.-..--++..+.++.-+ ++-.+-++
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~--~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v~Gm~gvv 198 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLS--CLIRVGAAADHNYQSYILRALGQLMLF-VDGMLGVV 198 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHH--HHHHHHTTSCHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHH--HHHHHHHhcChHHHHHHHHHHHHHHhc-cccccchh
Confidence 34455666677778888888888 555444333344445555 666577666666777777778888876 55554444
Q ss_pred -hhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh-hHHHHHHHHh
Q 012448 209 -KANLLTLLEEGVSKKNDTLETLSILELLYELAE-IQHSAEFLSR 251 (463)
Q Consensus 209 -~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~-t~~g~~~L~~ 251 (463)
...++.++..-+.+ .|.+|...|+++|.-++. ++.++..+.+
T Consensus 199 s~~~fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~ 242 (339)
T 3dad_A 199 AHSDTIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIR 242 (339)
T ss_dssp HCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred CCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHH
Confidence 55677999888887 999999999999999999 5556664443
No 103
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=89.06 E-value=19 Score=35.78 Aligned_cols=231 Identities=14% Similarity=0.105 Sum_probs=151.4
Q ss_pred HHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHH
Q 012448 118 ALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLF 197 (463)
Q Consensus 118 ~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia 197 (463)
+++.+-+.+++.+++.++..=+-+-.+.+..+...+.+...|-. .+ .+ + .+.
T Consensus 70 L~~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~-------~p-------------~v-----~---Yl~ 121 (341)
T 1upk_A 70 LAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTR-------TP-------------TV-----E---YIC 121 (341)
T ss_dssp HHHHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTB-------CH-------------HH-----H---HHH
T ss_pred HHHHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCC-------Cc-------------hh-----H---HHH
Confidence 56666777999999999999999999999999988877653210 00 00 1 111
Q ss_pred hcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccc----cchhhhh
Q 012448 198 SVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSA----TETILRS 273 (463)
Q Consensus 198 ~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~----~dpl~r~ 273 (463)
. .-.++..++...++ .|+ -++|=.||+|..+.+..++|+...+.+.++.+++.... +|.+..
T Consensus 122 ~----------~peil~~L~~gYe~-~di--Al~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~T- 187 (341)
T 1upk_A 122 T----------QQNILFMLLKGYES-PEI--ALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFAT- 187 (341)
T ss_dssp T----------CTHHHHHHHHGGGS-TTT--HHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHH-
T ss_pred c----------CHHHHHHHHHhhcc-chh--HhHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHH-
Confidence 2 23567778888888 887 67889999999999999999999999999999998754 333311
Q ss_pred hhhhHhhhhccccccch-hcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhh--cCchhHHHH
Q 012448 274 RAIMISGRLLSKDDSHM-FIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLL--CLPPAARHV 350 (463)
Q Consensus 274 ~aili~g~i~~f~~~~~-~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~--~~~~~~~~~ 350 (463)
.--++. .++ .+.+-+.++|-.|++..-.++++++-..+--++--||.|=.......++.+ .+++.++-+
T Consensus 188 -----fkelLt---~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~ 259 (341)
T 1upk_A 188 -----FKDLLT---RHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLM 259 (341)
T ss_dssp -----HHHHHH---SSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHH
T ss_pred -----HHHHHh---ccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHH
Confidence 111111 010 011224566888887766788999999999999999988766666555553 123333333
Q ss_pred HHHHHhhccchhhHhHHhhhHHHhcCCC--chhhhhhhhhHHHHHHHHHHHHH
Q 012448 351 IDAAFDRQGHGKQLAALHGLANIAGKTR--SEDKIILNADAEESLRHLIYEVA 401 (463)
Q Consensus 351 l~~~~~~~~~~~k~r~L~al~~Il~~~r--~~~~~il~~~~e~~l~~~~ye~~ 401 (463)
|...-+. +...+..|.|-+..+..-++ ++...|+-..-+. |.+.. ..+
T Consensus 260 M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~k-Ll~fl-~~f 309 (341)
T 1upk_A 260 MNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAK-LIEFL-SKF 309 (341)
T ss_dssp HHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHH-HHHHH-HHT
T ss_pred HHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHH-HHHHH-HhC
Confidence 3332221 12228889999988777553 2355566455554 55444 444
No 104
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=87.85 E-value=0.33 Score=51.85 Aligned_cols=112 Identities=12% Similarity=0.062 Sum_probs=83.9
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC-CchHHHHHH-HHHHHHHhC
Q 012448 78 IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN-GNEEVATAS-MDAIKKLAG 155 (463)
Q Consensus 78 ~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d-~d~~va~~A-~~~L~~lak 155 (463)
.+.+.+.+..||..+++.||..|+.++.-++ .. .. + +.++..+-.||.+ .|++.+..+ ++.|+++..
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p---~~-l------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s 365 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-IT---DS-L------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYR 365 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CS---ST-H------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-ch---hh-H------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHc
Confidence 5778899999999999999999999998887 33 11 1 1356666677776 555555544 788999998
Q ss_pred CCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHH
Q 012448 156 FPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASV 206 (463)
Q Consensus 156 ~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~ 206 (463)
+++.. -.++..++ .|-+.+-+.-..||.-|+.++..+. ..+.+..
T Consensus 366 ~p~~a--~~dp~LVP--RL~PFLRHtITSVR~AVL~TL~tfL--~~~~LRL 410 (800)
T 3oc3_A 366 ENPEL--SIPPERLK--DIFPCFTSPVPEVRTSILNMVKNLS--EESIDFL 410 (800)
T ss_dssp HCTTC--CCCSGGGG--GTGGGGTCSSHHHHHHHHHHTTTCC--CHHHHHH
T ss_pred CCccc--ccChHHHH--HHHhhhcCCcHHHHHHHHHHHHHHH--hhhHHHH
Confidence 88632 23457777 7888999999999999999987766 4444444
No 105
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=87.07 E-value=4.4 Score=39.88 Aligned_cols=106 Identities=13% Similarity=0.204 Sum_probs=72.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhh--ccCcHHHHHHhhcC-------CchHHHHHHHHHHHH
Q 012448 82 MPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLI--DYEIYPLLLDCLIN-------GNEEVATASMDAIKK 152 (463)
Q Consensus 82 ~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~--~~~l~~~li~~l~d-------~d~~va~~A~~~L~~ 152 (463)
...|. |.....+.||+++.+.|+.+++|+ +. +...+. .+.++..+...|.+ ..-.+.+.-+.+|..
T Consensus 73 L~nL~-~~~~~~~~~rE~aarII~ssLRNN---P~-Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~ 147 (315)
T 3qml_C 73 LANLS-LNENLPLTLRELSTRVITSCLRNN---PP-VVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNE 147 (315)
T ss_dssp HHHHH-HCTTSCHHHHHHHHHHHHHHHTTC---HH-HHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHH
T ss_pred HHHHH-hhccCChhHHHHHHHHHHHHHccC---HH-HHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 34444 566678889999999999999999 66 666443 34455555544433 233677778888998
Q ss_pred HhCCCCCccccccCCCcchhhHhhHhhcC--CchhHHHHHHHHHHHHh
Q 012448 153 LAGFPNGIDIIFPADNKAATDLGNLVAQC--SSLGRVRVLSLIVKLFS 198 (463)
Q Consensus 153 lak~~~~l~~l~~~~~~~~~~L~~~~~~~--~~~vR~Rv~el~v~ia~ 198 (463)
|.+.+.- |...... .|.++.... +..+|.||.+++..+..
T Consensus 148 L~~~~~~----F~~~~m~--~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 148 LPVTSED----LPIYSTV--VLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp SCCCSTT----C--CCHH--HHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HhcChHh----hhhccHH--HHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 8888621 1222333 455455555 89999999999999985
No 106
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=86.71 E-value=0.44 Score=50.95 Aligned_cols=161 Identities=15% Similarity=0.149 Sum_probs=116.9
Q ss_pred CcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHH
Q 012448 54 VPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLD 133 (463)
Q Consensus 54 ~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~ 133 (463)
+--.||+++.+|..+ ...++. -++...++.++.++.=.||.-++-.+.++ . +- +.+ + .++++.++.
T Consensus 241 VAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~---DL-L~~-L--d~Vv~aVL~ 306 (800)
T 3oc3_A 241 VAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYL---K---EF-VED-K--DGLCRKLVS 306 (800)
T ss_dssp BCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---G---GG-CCC-H--HHHHHHHHH
T ss_pred eeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHH---H---HH-HHH-H--HHHHHHHHh
Confidence 345889999999998 544444 35666777899999999999888888886 1 11 111 1 357889999
Q ss_pred hhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcC--CchhHHHHHHHHHHHHhcCHHHHHHHHhhc
Q 012448 134 CLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQC--SSLGRVRVLSLIVKLFSVSRSVASVIFKAN 211 (463)
Q Consensus 134 ~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~--~~~vR~Rv~el~v~ia~~S~~~~~~v~~sg 211 (463)
+|+|+|..|...|+.+|.-++ .+..+..+++ .++ ..+.+. =+.---.|.++++.+.++.+ +.+....
T Consensus 307 GL~D~DDDVRAVAAetLiPIA-~p~~l~~LL~--iLW-----d~L~~LDDLSASTgSVMdLLAkL~s~p~---~a~~dp~ 375 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFP-ITDSLDLVLE--KCW-----KNIESEELISVSKTSNLSLLTKIYRENP---ELSIPPE 375 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSC-CSSTHHHHHH--HHH-----HHHHTCCSCCTTHHHHHHHHHHHHHHCT---TCCCCSG
T ss_pred hcCCcccHHHHHHHHHhhhhc-chhhHHHHHH--HHH-----HHhhhhcccchhhHHHHHHHHHHHcCCc---ccccChH
Confidence 999999999999999999888 3333333322 122 122222 23345678899999999985 3445568
Q ss_pred cHHHHHhhcCCCCcHHHHHhHHHHHHHHH
Q 012448 212 LLTLLEEGVSKKNDTLETLSILELLYELA 240 (463)
Q Consensus 212 l~~~ll~eL~~~~DvLv~lnalell~eLa 240 (463)
++|.+.--+.. .=.=||.++++.+..+.
T Consensus 376 LVPRL~PFLRH-tITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 376 RLKDIFPCFTS-PVPEVRTSILNMVKNLS 403 (800)
T ss_dssp GGGGTGGGGTC-SSHHHHHHHHHHTTTCC
T ss_pred HHHHHHhhhcC-CcHHHHHHHHHHHHHHH
Confidence 89999999999 88889999999998766
No 107
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=85.15 E-value=57 Score=37.11 Aligned_cols=179 Identities=9% Similarity=0.082 Sum_probs=102.2
Q ss_pred chhHHHHH-HHHHHHHhcCHH-HHHHHHhhccHHHHHhhcCCC-CcHHHHHhHHHHHHHHHhhHHH--H-HHHHhcchHH
Q 012448 183 SLGRVRVL-SLIVKLFSVSRS-VASVIFKANLLTLLEEGVSKK-NDTLETLSILELLYELAEIQHS--A-EFLSRTTLLQ 256 (463)
Q Consensus 183 ~~vR~Rv~-el~v~ia~~S~~-~~~~v~~sgl~~~ll~eL~~~-~DvLv~lnalell~eLa~t~~g--~-~~L~~~gi~~ 256 (463)
+...+|.+ ++++.++....+ ..+ -+++.+-+.+.++ .|--.+=.++=.++.++++... . .++. .++.
T Consensus 426 ~~~~f~~~Rd~L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~--~vi~ 498 (1023)
T 4hat_C 426 TIQLYKSEREVLVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV--TVIK 498 (1023)
T ss_dssp GHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH--HHHH
Confidence 34555444 777777765543 222 2344444445542 4666666667777787773322 2 2222 2344
Q ss_pred HHHHHhcccc---cchhhhhhhhhHhhhhccccccchhcchhhhhhhHHHHHHHhccccCCChhhhhHHHHHHHhhcCCH
Q 012448 257 LLCSLIGNSA---TETILRSRAIMISGRLLSKDDSHMFIDESSAKTVISAIDGRLGFLQSQDSDECESALEALGQIGSSI 333 (463)
Q Consensus 257 ~L~~~i~~~~---~dpl~r~~aili~g~i~~f~~~~~~~~~~~~k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~ 333 (463)
.|+++..... ..+.+|+-++.+.|.|.-| +.. -.+..++.++.+|+.+.++.+.+..+|.||+..|+..
T Consensus 499 ~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~w------l~~-~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~- 570 (1023)
T 4hat_C 499 DLLDLCVKKRGKDNKAVVASDIMYVVGQYPRF------LKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK- 570 (1023)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHH------HHH-CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhhhccccCcchHHHHHHHHHHHHHHHHH------Hhc-cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH-
Confidence 5555554322 2233554555777777653 210 1123667788888888777788999999999999973
Q ss_pred HHHHHHhh-c---CchhHHHHHHHHHhhccc---hhhHhHHhhhHHHhcCC
Q 012448 334 QGATLLLL-C---LPPAARHVIDAAFDRQGH---GKQLAALHGLANIAGKT 377 (463)
Q Consensus 334 eGk~~L~~-~---~~~~~~~~l~~~~~~~~~---~~k~r~L~al~~Il~~~ 377 (463)
.+..+.. + ..+-+..++..+...... ..+.+..+|++.+....
T Consensus 571 -c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 571 -CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp -HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred -HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 3333321 1 012345555544444332 22789999999999865
No 108
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=85.09 E-value=17 Score=36.16 Aligned_cols=225 Identities=13% Similarity=0.162 Sum_probs=135.1
Q ss_pred HHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhH-----HHHHHHHhc-chHHHHHHHhcccccchhhhhhhhh
Q 012448 204 ASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQ-----HSAEFLSRT-TLLQLLCSLIGNSATETILRSRAIM 277 (463)
Q Consensus 204 ~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~-----~g~~~L~~~-gi~~~L~~~i~~~~~dpl~r~~ail 277 (463)
++.+..++++..++..|.. =|.=.|+.+..++.-+-..+ -..+||++. .+++.|+..-. +|-+ -+
T Consensus 71 ~~ei~~~dll~~Li~~l~~-L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe----~~di----Al 141 (341)
T 1upk_A 71 AQELYNSGLLSTLVADLQL-IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE----SPEI----AL 141 (341)
T ss_dssp HHHHHHHSHHHHHHHTGGG-SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG----STTT----HH
T ss_pred HHHHHHhCHHHHHHHhccc-CCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc----cchh----Hh
Confidence 3444566999999999999 99999999999999988833 255788753 44554444432 2221 12
Q ss_pred Hhhhhccccccchhcchhhhhh--hHHHHHHHhccccCCChhhhhHHHHHHHhhcCCHHHHHHHhhcCchhHHHHHHHHH
Q 012448 278 ISGRLLSKDDSHMFIDESSAKT--VISAIDGRLGFLQSQDSDECESALEALGQIGSSIQGATLLLLCLPPAARHVIDAAF 355 (463)
Q Consensus 278 i~g~i~~f~~~~~~~~~~~~k~--~p~~l~~~f~~~~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~~~~~~~~l~~~~ 355 (463)
..|-|+- +.+++ +++.+. +...+..+|+-++.+.=++..-|+.|+-.+=.+ ||.+...-.......+...|.
T Consensus 142 ~~G~mLR--ecir~--e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~--Hk~lvaefL~~nyd~Ff~~y~ 215 (341)
T 1upk_A 142 NCGIMLR--ECIRH--EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR--HKLLSAEFLEQHYDRFFSEYE 215 (341)
T ss_dssp HHHHHHH--HHHTS--HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS--SHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHH--HHHHh--HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc--cHHHHHHHHHHhHHHHHHHHH
Confidence 2343332 11111 111110 001223456667777777777777777655332 332222211224666777777
Q ss_pred hhccchh---hHhHHhhhHHHhcCCCchhhhhhhhhHHHHHHHHHHHHHhhCCCCChhHHHHHHh-cCCHHHHHHHHHHH
Q 012448 356 DRQGHGK---QLAALHGLANIAGKTRSEDKIILNADAEESLRHLIYEVASRSSKLTPSGLFLSVL-QQAAEIRLAGYRMI 431 (463)
Q Consensus 356 ~~~~~~~---k~r~L~al~~Il~~~r~~~~~il~~~~e~~l~~~~ye~~~~~~~~~p~~~~~~~~-qpF~elr~A~~~~l 431 (463)
..+.++. |.-+|.=|+.|+--. .+.. .+ ..|-. +..-+.++|+++ -+-..||.-|++++
T Consensus 216 ~Ll~S~NYVTkRQSlKLLgelLldr--~N~~--------vM-----~~Yis--~~~nLkl~M~LL~d~sk~Iq~EAFhVF 278 (341)
T 1upk_A 216 KLLHSENYVTKRQSLKLLGELLLDR--HNFT--------IM-----TKYIS--KPENLKLMMNLLRDKSRNIQFEAFHVF 278 (341)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHSG--GGHH--------HH-----HHHTT--CHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHhcCCcchhHHHHHHHHHHHHhCc--hHHH--------HH-----HHHhC--CHHHHHHHHHHhcCchhchhhhhhhhe
Confidence 7666644 888888888877622 1111 12 23333 235567899999 99999999999999
Q ss_pred HHhhcCchh---HHH--hhhccchhHhhcCCCcc
Q 012448 432 TGLVARPWC---LME--LCSKQEIINTVTDASTE 460 (463)
Q Consensus 432 ~~l~~~~Wg---~~~--i~~~~gfie~lldr~~E 460 (463)
+--++-|-- +.. +.|...+++|+-+=.+|
T Consensus 279 KvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d 312 (341)
T 1upk_A 279 KVFVANPNKTQPILDILLKNQAKLIEFLSKFQND 312 (341)
T ss_dssp HHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred eeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 998887654 332 23667788877654443
No 109
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=83.16 E-value=8.4 Score=36.54 Aligned_cols=140 Identities=9% Similarity=0.005 Sum_probs=96.3
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHH-hhcCCchHHHHHHHHHHHHHhC-C
Q 012448 79 PHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLD-CLINGNEEVATASMDAIKKLAG-F 156 (463)
Q Consensus 79 ~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~-~l~d~d~~va~~A~~~L~~lak-~ 156 (463)
+...+......+|+...||-+|+..+++. . . .. ++++++-. -..|+.=.|...+..++.++++ .
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-~---~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~ 135 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-K---DK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKI 135 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-T---SH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-C---cH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhc
Confidence 44578888999999999999999999986 2 2 12 35666665 5668888899999999999985 2
Q ss_pred CCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHH
Q 012448 157 PNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELL 236 (463)
Q Consensus 157 ~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell 236 (463)
.+. ..++ .+.+-..+.|.-||+=+.+..--.++. +.. . -.-.-+++.+.....| ++-.||+++.--|
T Consensus 136 ~pe-------~~l~--~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~-k-~dp~~ll~iL~~L~~D-~s~yVrKSVan~L 202 (240)
T 3l9t_A 136 EYK-------KALP--IIDEWLKSSNLHTRRAATEGLRIWTNR-PYF-K-ENPNEAIRRIADLKED-VSEYVRKSVGNAL 202 (240)
T ss_dssp CTT-------TTHH--HHHHHHHCSSHHHHHHHHHHTCSGGGS-TTT-T-TCHHHHHHHHHTTTTC-SCHHHHHHHHHHH
T ss_pred CHH-------HHHH--HHHHHhcCCCHHHHHHHHHhhHHHhcc-chh-h-cCHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Confidence 221 1334 556577778888887766664322222 110 0 0011256666666666 9999999999999
Q ss_pred HHHHh-hHHH
Q 012448 237 YELAE-IQHS 245 (463)
Q Consensus 237 ~eLa~-t~~g 245 (463)
+++++ .|+-
T Consensus 203 rD~SK~~Pd~ 212 (240)
T 3l9t_A 203 RDISKKFPDL 212 (240)
T ss_dssp HHHHTTCHHH
T ss_pred HHHhhhCHHH
Confidence 99999 4443
No 110
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=82.97 E-value=10 Score=38.28 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=92.6
Q ss_pred HHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhc-----------CCchHHHHHHHHHHHHHhCCCCCcc-ccccCC
Q 012448 100 ACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLI-----------NGNEEVATASMDAIKKLAGFPNGID-IIFPAD 167 (463)
Q Consensus 100 al~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~-----------d~d~~va~~A~~~L~~lak~~~~l~-~l~~~~ 167 (463)
.+..+...+++.. .. -++-+...| +..++..|. +.|..+-...+..|+.+..+..|++ ++-.+.
T Consensus 87 ~L~sL~v~Lrt~~--~s-WV~~F~~~G-l~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~ 162 (383)
T 3eg5_B 87 CLESLRVSLTSHP--VS-WVQTFGAEG-LASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEE 162 (383)
T ss_dssp HHHHHHHHHHHSC--HH-HHHHHHHHH-HHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSS
T ss_pred HHHHHHHHHhhCc--cH-HHHHHHHcc-HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChH
Confidence 3555555555541 22 555555333 344443332 4456677788999999999988996 444556
Q ss_pred CcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCH-HH-HHH----------HHhhccHHHHHhhcCCCCcHHHHHhHHHH
Q 012448 168 NKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSR-SV-ASV----------IFKANLLTLLEEGVSKKNDTLETLSILEL 235 (463)
Q Consensus 168 ~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~-~~-~~~----------v~~sgl~~~ll~eL~~~~DvLv~lnalel 235 (463)
.+. .|...+...+..+|.-|.++++-++-.+. +- .+. ..+..-|..++..|+++.++=++.+++.+
T Consensus 163 ~i~--~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~l 240 (383)
T 3eg5_B 163 GIL--LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQL 240 (383)
T ss_dssp HHH--HHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHH
T ss_pred HHH--HHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHH
Confidence 665 77767777888999999999999887764 21 222 23445588899999886788888888888
Q ss_pred HHHHHhhH
Q 012448 236 LYELAEIQ 243 (463)
Q Consensus 236 l~eLa~t~ 243 (463)
+--+..++
T Consensus 241 IN~li~~~ 248 (383)
T 3eg5_B 241 INALITPA 248 (383)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 88777743
No 111
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=82.89 E-value=12 Score=39.19 Aligned_cols=132 Identities=13% Similarity=0.097 Sum_probs=94.8
Q ss_pred HHHHHccccCCCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 012448 42 SVILNTLQTKPDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQL 121 (463)
Q Consensus 42 ~~L~~~L~~~~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~ 121 (463)
..|+..-+. + +..+..++..+.|.|+ +-+++...-.+.+..-.+..+..||.-|++.+-.+.++ ++...
T Consensus 32 ~~Il~~~kg-~--~k~K~LaaQ~I~kffk--~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k----- 100 (507)
T 3u0r_A 32 QVILDGVKG-G--TKEKRLAAQFIPKFFK--HFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR----- 100 (507)
T ss_dssp HHHHHGGGS-C--HHHHHHHHHHHHHHGG--GCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----
T ss_pred HHHHHhcCC-C--HHHHHHHHHHHHHHHh--hChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----
Confidence 445554443 3 5677788889999965 66777778888899999999999999999998887765 33233
Q ss_pred hhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh
Q 012448 122 LIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS 198 (463)
Q Consensus 122 ~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~ 198 (463)
+.-.|+++|+.+|..-....-++|..+.+..+ .+++. .|-..+.+.++.+|-|++..+..-..
T Consensus 101 -----iaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~--~lf~~i~~~~e~~Rer~lkFi~~kl~ 163 (507)
T 3u0r_A 101 -----VADILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLG--GLFSQILQGEDIVRERAIKFLSTKLK 163 (507)
T ss_dssp -----HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHH--HHHHHHHHSCHHHHHHHHHHHHHHGG
T ss_pred -----HHHHHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHH--HHHHHHcccchHHHHHHHHHHHHHHh
Confidence 34445678888887777888888888876653 12222 33335566799999999998865443
No 112
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=81.53 E-value=59 Score=37.32 Aligned_cols=226 Identities=13% Similarity=0.153 Sum_probs=129.0
Q ss_pred CcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh-----cC
Q 012448 126 EIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS-----VS 200 (463)
Q Consensus 126 ~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~-----~S 200 (463)
..+..++.++-+|+.+..+.|-..|..+-+++.+...+.. .|. .+.+..+|+=...++-+.-+ .+
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~-------iL~---~s~~~~vR~fAa~~L~~~I~~~W~~L~ 97 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDT-------ILE---FSQNMNTKYYGLQILENVIKTRWKILP 97 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTC-------C------CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHH-------Hhc---CCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence 4677788899999999999999999998887765442211 111 23577777777776666554 46
Q ss_pred HHHHHHHHhhccHHHHHhhcCC----CCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhh
Q 012448 201 RSVASVIFKANLLTLLEEGVSK----KNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAI 276 (463)
Q Consensus 201 ~~~~~~v~~sgl~~~ll~eL~~----~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ai 276 (463)
++-.+.+. ..+++.+...-.+ ..|..++--...++..+++..+.-+| .+.++.|++.... ++...-.++
T Consensus 98 ~e~~~~LR-~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W---p~fi~dLv~~~~~---~~~~~~~~L 170 (1073)
T 3gjx_A 98 RNQCEGIK-KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW---PTFISDIVGASRT---SESLCQNNM 170 (1073)
T ss_dssp HHHHHHHH-HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC---TTHHHHHHHHHHH---CHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc---cHHHHHHHHHhCC---CHHHHHHHH
Confidence 66666554 4677777765433 13566666677888888885433222 3455555555432 221110112
Q ss_pred hHhhhhccccccchh------------cchhhhhhhHHHHHHHhccc-cCCChhhhhHHHHHHHhhcCCHHHHHHHhhcC
Q 012448 277 MISGRLLSKDDSHMF------------IDESSAKTVISAIDGRLGFL-QSQDSDECESALEALGQIGSSIQGATLLLLCL 343 (463)
Q Consensus 277 li~g~i~~f~~~~~~------------~~~~~~k~~p~~l~~~f~~~-~~~d~~~~~~A~dtlG~Igss~eGk~~L~~~~ 343 (463)
.+...+.- ++..| +........|..++.+...+ .++++.....++.|++...+=..--..+ .+
T Consensus 171 ~IL~~L~E--EV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~-~~- 246 (1073)
T 3gjx_A 171 VILKLLSE--EVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIF-ET- 246 (1073)
T ss_dssp HHHHHHHH--HHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHH-SS-
T ss_pred HHHHHHHH--HHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhc-cc-
Confidence 22111110 11111 00112223555555443333 3456777888999999998854432222 21
Q ss_pred chhHHHHHHHH-Hhhccchh-hHhHHhhhHHHhcCC
Q 012448 344 PPAARHVIDAA-FDRQGHGK-QLAALHGLANIAGKT 377 (463)
Q Consensus 344 ~~~~~~~l~~~-~~~~~~~~-k~r~L~al~~Il~~~ 377 (463)
+ ++..+ +....+.. |..|++||..|++.+
T Consensus 247 -~----ll~~L~~~~L~~~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 247 -K----LISTLIYKFLNVPMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp -S----HHHHHHHHTSSSHHHHHHHHHHHHHHHHSC
T ss_pred -h----HHHHHHHHhcCChHHHHHHHHHHHHHHhcc
Confidence 2 44444 45555544 899999999999864
No 113
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=80.56 E-value=3.6 Score=46.76 Aligned_cols=151 Identities=11% Similarity=0.016 Sum_probs=95.6
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC
Q 012448 78 IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP 157 (463)
Q Consensus 78 ~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~ 157 (463)
.+.+...+..++.+.++.++..+++.+++.+.-. + ...+++.++++.+..++.++ .+...|++.|..|....
T Consensus 191 ~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi---~---~~~i~~~~ll~~l~~~L~~~--~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 191 VSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI---N---INLIVNEPCMNLLYSFLQIE--ELRCAACETMTEIVNKK 262 (980)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---C---HHHHHCHHHHHHHHHHTTSH--HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc---C---HHhhhcchHHHHHHHHcCCh--HHHHHHHHHHHHHHHcC
Confidence 3444556667777789999999999999998855 2 23455678999999999985 58889999999986543
Q ss_pred CCccccccCCCcchh----hHhhHhh-cCCchhHHHHHHHHHHHHhcCHHH---------------HHHHHhhccHHHHH
Q 012448 158 NGIDIIFPADNKAAT----DLGNLVA-QCSSLGRVRVLSLIVKLFSVSRSV---------------ASVIFKANLLTLLE 217 (463)
Q Consensus 158 ~~l~~l~~~~~~~~~----~L~~~~~-~~~~~vR~Rv~el~v~ia~~S~~~---------------~~~v~~sgl~~~ll 217 (463)
...+. .-..+... .+..... ..|.....+++.+++.++..-... ...+ .++++.++
T Consensus 263 ~~~~~--k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l--~~ll~~lL 338 (980)
T 3ibv_A 263 MKPLE--KLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQL--YNLFPYLI 338 (980)
T ss_dssp CCHHH--HHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHH--HHTHHHHH
T ss_pred CChhh--HHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHH--HHHHHHHH
Confidence 21100 00000000 1111111 356666677887877665331111 1222 26899999
Q ss_pred hhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 218 EGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 218 ~eL~~~~DvLv~lnalell~eLa~ 241 (463)
.++.+ +|.-+-..+++.+.++..
T Consensus 339 ~~~~~-~~deVs~~t~~Fw~~~l~ 361 (980)
T 3ibv_A 339 RYLSD-DYDETSTAVFPFLSDLLV 361 (980)
T ss_dssp HHHTC-SSHHHHHTTHHHHHHHHH
T ss_pred HHhCC-CchhHHHHHHHHHHHHHH
Confidence 99988 655666678888887775
No 114
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=75.32 E-value=3.9 Score=46.48 Aligned_cols=171 Identities=7% Similarity=-0.031 Sum_probs=96.6
Q ss_pred HHHHHHHHHhccccccchhhchHHHHHHhhc--CCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhh--
Q 012448 60 TLVVCLERIFKTKYGASLIPHYMPFVQVGLT--ADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCL-- 135 (463)
Q Consensus 60 ~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~--h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l-- 135 (463)
.+..+|+.+- ...+..+.+.+.+.+..-+. +++...|+.+++++|.+.+....... ...+ +.+++.++...
T Consensus 432 ~~~~~L~~l~-~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e--~~~l--~~v~~~l~~l~~~ 506 (1049)
T 3m1i_C 432 SEREVLVYLT-HLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTE--KRFV--VTVIKDLLDLTVK 506 (1049)
T ss_dssp HHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHH--HHHH--HHHHHHHHHHTTS
T ss_pred HHHHHHHHHH-ccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhh--HHHH--HHHHHHHHHHHhh
Confidence 5666777774 34455666767777777775 57889999999999998765422111 0111 12344444311
Q ss_pred ---cCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHH-------
Q 012448 136 ---INGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVAS------- 205 (463)
Q Consensus 136 ---~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~------- 205 (463)
.++..-++..+..++.++++.-..-...+ +.+++ .|-+.+.+.+..||.+++..+.++++.....+-
T Consensus 507 ~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-~~vl~--~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~ 583 (1049)
T 3m1i_C 507 KRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL--KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES 583 (1049)
T ss_dssp SCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHH--HHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHH--HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 13455566567777776653211000001 12222 333345566789999999999999986544331
Q ss_pred --HHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 206 --VIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 206 --~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
++ ..+++.+..-+.. -|.--+..++|.+..++.
T Consensus 584 ~p~~--~~il~~l~~~~~~-~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 584 EPFI--QTIIRDIQKTTAD-LQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp SCHH--HHHHHTHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred CcHH--HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHH
Confidence 11 1344433333333 333334677888888876
No 115
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=74.97 E-value=15 Score=34.24 Aligned_cols=115 Identities=12% Similarity=0.160 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCC-cch
Q 012448 93 SHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADN-KAA 171 (463)
Q Consensus 93 ~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~-~~~ 171 (463)
+.....-+++.+..+..+. .+ +...+..++.+..|+.|+..+...+.+.|++.|..++-.+. ++. ..
T Consensus 67 ~~~~~~~~l~CLkalmn~~---~G-~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~-------~~G~~~- 134 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNK---FG-IKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ-------PEDMNE- 134 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSH---HH-HHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSS-------SSCHHH-
T ss_pred hHHHHHHHHHHHHHHhCCh---HH-HHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCC-------CCChHH-
Confidence 3455556666666665544 55 77788888899999999999999999999999999986653 111 11
Q ss_pred hhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhH
Q 012448 172 TDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQ 243 (463)
Q Consensus 172 ~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~ 243 (463)
+|++.+-+... +.+..-|..+++.+++.+++=.+.+++.++--+..++
T Consensus 135 ----------------~VL~Al~~~~~--------~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~ 182 (233)
T 2f31_A 135 ----------------RVLEAMTERAE--------MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPA 182 (233)
T ss_dssp ----------------HHHHHHHHHHH--------HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTC
T ss_pred ----------------HHHHHHHHHHH--------hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCC
Confidence 11112211111 1245567778888886477888888888877776643
No 116
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=69.30 E-value=47 Score=31.81 Aligned_cols=103 Identities=18% Similarity=0.244 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHhhccH----HHHHhhcCCCCcHHHHHhHHHHHHHHHh--hHHHHHHHHhcchHHHHHH
Q 012448 187 VRVLSLIVKLFSVSRSVASVIFKANLL----TLLEEGVSKKNDTLETLSILELLYELAE--IQHSAEFLSRTTLLQLLCS 260 (463)
Q Consensus 187 ~Rv~el~v~ia~~S~~~~~~v~~sgl~----~~ll~eL~~~~DvLv~lnalell~eLa~--t~~g~~~L~~~gi~~~L~~ 260 (463)
|.++.++=-+|+| +|.=....++.+. |-+-..-++....-+|++++-++..|++ .++-.+||.++.++.....
T Consensus 74 cnaLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 3444466667876 4444444555554 3333333333568999999999999999 7888899999999999999
Q ss_pred HhcccccchhhhhhhhhHhhhhccccccchhc
Q 012448 261 LIGNSATETILRSRAIMISGRLLSKDDSHMFI 292 (463)
Q Consensus 261 ~i~~~~~dpl~r~~aili~g~i~~f~~~~~~~ 292 (463)
.++..+ -+.++.|.-|...|+..+.-++|+
T Consensus 153 ime~Gs--elSKtvAtfIlqKIL~dd~GL~Yi 182 (268)
T 2fv2_A 153 IMESGS--ELSKTVATFILQKILLDDTGLAYI 182 (268)
T ss_dssp HHHHSC--HHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHhhcc--HHHHHHHHHHHHHHhccchhHHHH
Confidence 998543 344556666666666543344554
No 117
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=67.74 E-value=54 Score=37.88 Aligned_cols=203 Identities=13% Similarity=0.113 Sum_probs=110.6
Q ss_pred HHHHHHhcCChHHHHHccccC-CCCcchHHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 012448 31 AAKKFLDRFPLSVILNTLQTK-PDVPGLEDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLE 109 (463)
Q Consensus 31 ~~~~~~~~~~l~~L~~~L~~~-~~~~~~~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~ 109 (463)
+.++.+.+..++-+...-+.. ++.+..+.+++.++..++..-.|.. -+.+.+.|...+.. ++..++.++..+..+.+
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-WPDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 344445544455444432111 1336788899999999976655633 45677777777765 67889999999998865
Q ss_pred C---Cch--hHH--HHHHHhhcc--CcHHHHHHhhcC-------------------CchHHHHHHHHHHHHHhCCCCCcc
Q 012448 110 D---SDL--EAS--CALQLLIDY--EIYPLLLDCLIN-------------------GNEEVATASMDAIKKLAGFPNGID 161 (463)
Q Consensus 110 ~---~~~--~~~--~~~~~~~~~--~l~~~li~~l~d-------------------~d~~va~~A~~~L~~lak~~~~l~ 161 (463)
. .+. ... .+.+.+.+. .++.++...+.+ ++..+...+.+++.....-.+ +.
T Consensus 163 ev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~-~~ 241 (1204)
T 3a6p_A 163 DVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS-MS 241 (1204)
T ss_dssp HHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC-HH
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC-HH
Confidence 3 100 000 022222221 344444444433 223455666666654433222 12
Q ss_pred ccccCC--CcchhhHhhHhhcCCchhHHHHHHHHHHHHhcC--HHHHHHHHh---hccHHHHHhhc--------CCCCcH
Q 012448 162 IIFPAD--NKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVS--RSVASVIFK---ANLLTLLEEGV--------SKKNDT 226 (463)
Q Consensus 162 ~l~~~~--~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S--~~~~~~v~~---sgl~~~ll~eL--------~~~~Dv 226 (463)
.++..+ .++ .+-.. -.++.+|.-+++++++|.+.. ++....+.. ...+..++... .+ +|.
T Consensus 242 ~i~~~~~~ll~--~l~~~--l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e-~d~ 316 (1204)
T 3a6p_A 242 HITAENCKLLE--ILCLL--LNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVE-KHY 316 (1204)
T ss_dssp HHHTTTSHHHH--HHHHG--GGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCH-HHH
T ss_pred HHHhccchHHH--HHHHH--cCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCcc-HHH
Confidence 233322 332 22212 247889999999999999876 333221111 00012233322 33 577
Q ss_pred HHHHhHHHHHHHHHh
Q 012448 227 LETLSILELLYELAE 241 (463)
Q Consensus 227 Lv~lnalell~eLa~ 241 (463)
-+.....+++..++.
T Consensus 317 e~~k~l~~ll~~lg~ 331 (1204)
T 3a6p_A 317 VFLKRLCQVLCALGN 331 (1204)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888889998885
No 118
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=66.20 E-value=1.9e+02 Score=33.28 Aligned_cols=120 Identities=10% Similarity=0.103 Sum_probs=73.0
Q ss_pred HHHHhhcCC--chHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhh-Hh-hcCCchhHHHHHHHHHHHH-----hcC
Q 012448 130 LLLDCLING--NEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGN-LV-AQCSSLGRVRVLSLIVKLF-----SVS 200 (463)
Q Consensus 130 ~li~~l~d~--d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~-~~-~~~~~~vR~Rv~el~v~ia-----~~S 200 (463)
.++....+| +.++.+.|-+.|..+-+++++.. .+.. +. .+.+..+|+=...++-+.. ..+
T Consensus 15 ~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~-----------~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~ 83 (1204)
T 3a6p_A 15 KAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICV-----------PCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMS 83 (1204)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHH-----------HHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSC
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHH-----------HHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 334444555 66788889999999877764321 1111 21 2345566665555555443 347
Q ss_pred HHHHHHHHhhccHHHHHhhcCCC--CcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcc
Q 012448 201 RSVASVIFKANLLTLLEEGVSKK--NDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGN 264 (463)
Q Consensus 201 ~~~~~~v~~sgl~~~ll~eL~~~--~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~ 264 (463)
++..+.+. ..+++.+..+..+. .+..+|-....++.++++....-+| .+.++.|++.+..
T Consensus 84 ~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W---p~ll~~L~~~~~~ 145 (1204)
T 3a6p_A 84 RLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW---PDMLIELDTLSKQ 145 (1204)
T ss_dssp HHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC---TTHHHHHHHHHHT
T ss_pred HHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc---hHHHHHHHHHhcC
Confidence 77766665 46778777664321 4688998899999999985322111 3566666666643
No 119
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=64.68 E-value=48 Score=37.87 Aligned_cols=154 Identities=13% Similarity=0.087 Sum_probs=97.6
Q ss_pred cchHHHHHHHHHHHhc----c--ccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcH
Q 012448 55 PGLEDTLVVCLERIFK----T--KYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIY 128 (463)
Q Consensus 55 ~~~~~~~~~vL~~il~----~--~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~ 128 (463)
+..++++...+..+.. . ..+.+..+.+.+.+..++...+..-+.+++++||++ .+. +.+
T Consensus 409 ~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~-g~p--------------~~l 473 (1056)
T 1lsh_A 409 PILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA-GQP--------------NSI 473 (1056)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCG--------------GGH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc-CCh--------------hHH
Confidence 5556656554433321 1 124466788899999999999999999999999995 222 346
Q ss_pred HHHHHhhcC-------CchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHh-cC
Q 012448 129 PLLLDCLIN-------GNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFS-VS 200 (463)
Q Consensus 129 ~~li~~l~d-------~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~-~S 200 (463)
+.+..||.. ....|...|+.+|.++++..|. .+.+ .|-++.++.++-.-.|+..+.+-+-. =+
T Consensus 474 ~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-------~v~~--il~~i~~n~~e~~EvRiaA~~~Lm~t~P~ 544 (1056)
T 1lsh_A 474 KKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-------KVQE--IVLPIFLNVAIKSELRIRSCIVFFESKPS 544 (1056)
T ss_dssp HHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-------HHHH--HHHHHHHCTTSCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-------HHHH--HHHHHhcCCCCChHHHHHHHHHHHHHCcC
Confidence 666667642 2345778899999999865431 1222 34446655544444454444444432 33
Q ss_pred HHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 201 RSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 201 ~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
. ..+..+..-+....+.-|.-=+...|+.+++
T Consensus 545 ~---------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 545 V---------ALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp H---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred H---------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 4 3445555555554788888888899999999
No 120
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=64.61 E-value=22 Score=31.36 Aligned_cols=65 Identities=12% Similarity=0.095 Sum_probs=46.8
Q ss_pred HhhcCCchhHHHHHHHHHHHHhcCHHHHH-HHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 177 LVAQCSSLGRVRVLSLIVKLFSVSRSVAS-VIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 177 ~~~~~~~~vR~Rv~el~v~ia~~S~~~~~-~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
.+.++|+.+.+|.+.++=.+.+--...|. .+....+++.++.-+..+.|.-||--+++++.+-+.
T Consensus 60 rl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 60 RVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 44456667778888887777777544443 555566777776666555788999999999999887
No 121
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=62.81 E-value=21 Score=37.23 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhC
Q 012448 92 DSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAG 155 (463)
Q Consensus 92 ~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak 155 (463)
.||.+-..||.=||..++|- +. ....+.+-|.=..|+..+.++|.+|+..|+.++.++-.
T Consensus 417 ~d~~~laVAc~Digefvr~~---P~-gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELL---PE-SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---TT-HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHC---cc-hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 47889999999999999987 44 55666777888888899999999999999999988743
No 122
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=61.71 E-value=59 Score=27.74 Aligned_cols=75 Identities=7% Similarity=-0.005 Sum_probs=57.6
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhC
Q 012448 78 IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAG 155 (463)
Q Consensus 78 ~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak 155 (463)
.......|.+=|.|.+|.|.-+|+.-+-.+++|.+. . ....+.+.+.+.-++..+...+..|.+.....+..-+.
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~--~-f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK--I-FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH--H-HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH--H-HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 344577788889999999999999999999998842 2 44455555666666666667788999999999887753
No 123
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=61.62 E-value=37 Score=34.15 Aligned_cols=116 Identities=12% Similarity=0.136 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchh
Q 012448 93 SHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAAT 172 (463)
Q Consensus 93 ~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~ 172 (463)
+.....-+++.+..+..+. .+ +...+..++.+..++.|+..+...+.+.|++.|..++-.+. ++.
T Consensus 71 d~~~~~~~l~CLkalmN~~---~G-l~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~-------~~G---- 135 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNK---FG-IKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ-------PED---- 135 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSH---HH-HHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCS-------STT----
T ss_pred hHHHHHHHHHHHHHHhCCH---HH-HHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCC-------CCC----
Confidence 3455556666676665554 55 77788888899999999999999999999999999986542 111
Q ss_pred hHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHhhH
Q 012448 173 DLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAEIQ 243 (463)
Q Consensus 173 ~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~t~ 243 (463)
..-+|++.+-+.. .+.+..=|..++..+++.+++=++.+++.++--+..++
T Consensus 136 ------------~~~~VL~Al~~~~--------~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~ 186 (386)
T 2bnx_A 136 ------------MNERVLEAMTERA--------EMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPA 186 (386)
T ss_dssp ------------HHHHHHHHHHHHH--------HHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTC
T ss_pred ------------hHHHHHHHHHHHH--------HhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCC
Confidence 0111222222211 12345677788888886578888888888887777643
No 124
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=61.58 E-value=1.3e+02 Score=30.38 Aligned_cols=147 Identities=10% Similarity=0.051 Sum_probs=81.7
Q ss_pred hhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCC
Q 012448 77 LIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGF 156 (463)
Q Consensus 77 l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~ 156 (463)
.-.++.+.|..+-.+.+ ..|.-.++++..++-|. +. .++ +++++.++.-..|++..|.+-.+..|.+.++.
T Consensus 23 ~~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~---dp---sLl--~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~ 93 (386)
T 3o2t_A 23 TSERVVDLLNQAALITN-DSKITVLKQVQELIINK---DP---TLL--DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR 93 (386)
T ss_dssp HHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTT---CG---GGG--GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhcc---CH---HHH--HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH
Confidence 33445555555555554 36777777777765443 11 111 25677777766777777777777777777654
Q ss_pred CCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhc--------C------HHHHHHHHhhccHHHHHhhcCC
Q 012448 157 PNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSV--------S------RSVASVIFKANLLTLLEEGVSK 222 (463)
Q Consensus 157 ~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~--------S------~~~~~~v~~sgl~~~ll~eL~~ 222 (463)
..++ + +.+++ .|..++...+..|-.|+..+...|-+. + ++.-+.+. .+=..++.-+++
T Consensus 94 ~~el--~--~~~l~--~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~--~lK~~Il~~~ds 165 (386)
T 3o2t_A 94 DIEL--L--LKLIA--NLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVS--AMAGDIILLLDS 165 (386)
T ss_dssp CGGG--H--HHHHH--HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH--HHHHHHHHGGGC
T ss_pred HHHH--H--HHHHH--HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH--HHHHHHHHHhcc
Confidence 3322 1 22333 444344455666666665555555411 1 12333332 233455665666
Q ss_pred CCcHHHHHhHHHHHHHHHh
Q 012448 223 KNDTLETLSILELLYELAE 241 (463)
Q Consensus 223 ~~DvLv~lnalell~eLa~ 241 (463)
...=+|+.|+..+..+..
T Consensus 166 -~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 166 -DNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp -SSHHHHHHHHHHHHHHHH
T ss_pred -CCcchHHHHHHHHHHHHH
Confidence 777888888887777654
No 125
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=59.49 E-value=1e+02 Score=29.18 Aligned_cols=146 Identities=11% Similarity=0.033 Sum_probs=82.8
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCC
Q 012448 78 IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFP 157 (463)
Q Consensus 78 ~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~ 157 (463)
-.++.+.+..+-.|.+ ..|--.++++..++-+.+ .. +. +++++-++.-..+++..|.+--+..|.+.++..
T Consensus 14 ~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~d--p~-ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k 84 (257)
T 3gs3_A 14 RAKVVDWCNELVIASP-STKCELLAKVQETVLGSC--AE-LA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK 84 (257)
T ss_dssp HHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTT--GG-GH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccC--Hh-HH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666 477777777777665541 11 11 235555555556777777777777777776554
Q ss_pred CCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhc--------C------HHHHHHHHhhccHHHHHhhcCCC
Q 012448 158 NGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSV--------S------RSVASVIFKANLLTLLEEGVSKK 223 (463)
Q Consensus 158 ~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~--------S------~~~~~~v~~sgl~~~ll~eL~~~ 223 (463)
+.+ -+.+++ .|..++...|..|-.|+..+...+-+. + ++.-+.+. .+=+.+++-+++
T Consensus 85 ~~l----~~~~l~--~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~--~lK~~Il~~~~s- 155 (257)
T 3gs3_A 85 VEL----LPHVIN--VVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILS--LIKAQILDMIDN- 155 (257)
T ss_dssp GGG----HHHHHH--HHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH--HHHHHHHHGGGS-
T ss_pred HHH----HHHHHH--HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HHHHHHHHHHcc-
Confidence 322 112233 444345555666666666665555422 1 23333332 233556666666
Q ss_pred CcHHHHHhHHHHHHHHHh
Q 012448 224 NDTLETLSILELLYELAE 241 (463)
Q Consensus 224 ~DvLv~lnalell~eLa~ 241 (463)
...=+|+.|+..+..+..
T Consensus 156 ~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 156 ENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHH
Confidence 777788888877776654
No 126
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=57.78 E-value=19 Score=34.00 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=10.3
Q ss_pred HhhcCCCCcHHHHHhHHH
Q 012448 217 EEGVSKKNDTLETLSILE 234 (463)
Q Consensus 217 l~eL~~~~DvLv~lnale 234 (463)
+..|+| +|..|+..+.+
T Consensus 223 L~~L~D-~~~~VR~aa~~ 239 (244)
T 1lrv_A 223 LRELDE-PDPEVRLAIAG 239 (244)
T ss_dssp HHHCCC-CCHHHHHHHHC
T ss_pred HHHccC-CCHHHHHHHHH
Confidence 344566 77777766654
No 127
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=55.32 E-value=33 Score=31.55 Aligned_cols=68 Identities=9% Similarity=0.062 Sum_probs=50.4
Q ss_pred HhhHhhcCCchhHHHHHHHHHHHHhcCHHHH-HHHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 174 LGNLVAQCSSLGRVRVLSLIVKLFSVSRSVA-SVIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 174 L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~-~~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
|++.+.+.|+.+.+|.+.++-.+.+-....+ ..+.+..+++.+..-+++..+.-||.-++|++.+-+.
T Consensus 47 l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 47 IKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3345556777788888888888887776655 4556666777776666554789999999999999887
No 128
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=53.36 E-value=73 Score=28.19 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=52.7
Q ss_pred HhhHhhcCCchhHHHHHHHHHHHHhcCHHHHH-HHHhhccHHHHHhhcCC-----CCcHHHHHhHHHHHHHHHhh
Q 012448 174 LGNLVAQCSSLGRVRVLSLIVKLFSVSRSVAS-VIFKANLLTLLEEGVSK-----KNDTLETLSILELLYELAEI 242 (463)
Q Consensus 174 L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~-~v~~sgl~~~ll~eL~~-----~~DvLv~lnalell~eLa~t 242 (463)
|++.+.+.|..+.+|.+.++=.+.+--...|. .+.+..+++.+...+.. ..+.-||.-+++++.+-+..
T Consensus 55 l~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 55 LAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 33345567778888888888888888655554 56677788888887752 26899999999999999973
No 129
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=52.64 E-value=1.1e+02 Score=26.34 Aligned_cols=93 Identities=6% Similarity=-0.047 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhccccccchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC
Q 012448 58 EDTLVVCLERIFKTKYGASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN 137 (463)
Q Consensus 58 ~~~~~~vL~~il~~~~~~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d 137 (463)
...+-.+.+.|-. .+ .-.......|..=|.|++|.|.-+|+.-+-.+++|.+. . ....+.+.+++.-++..+.+
T Consensus 29 w~~ileicD~I~~--~~-~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~--~-fh~eias~~Fl~eL~kl~~~ 102 (149)
T 3g2s_A 29 WASINGFCEQLNE--DF-EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK--R-FHDEVGKFRFLNELIKVVSP 102 (149)
T ss_dssp HHHHHHHHHHGGG--SS-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCH--H-HHHHHTSHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHC--CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCH--H-HHHHHhhHHHHHHHHHHHcc
Confidence 4444445555522 22 33444577888889999999999999999999999843 2 55666677778778877764
Q ss_pred ------CchHHHHHHHHHHHHHhCC
Q 012448 138 ------GNEEVATASMDAIKKLAGF 156 (463)
Q Consensus 138 ------~d~~va~~A~~~L~~lak~ 156 (463)
.+..|....+..+..-+..
T Consensus 103 k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 103 KYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp TTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHH
Confidence 5788999999999887644
No 130
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=50.94 E-value=29 Score=33.78 Aligned_cols=107 Identities=19% Similarity=0.144 Sum_probs=67.6
Q ss_pred CCHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhcCCCc--h----hhhhhhhhHHHHHHHHHHHHHhhC
Q 012448 331 SSIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAGKTRS--E----DKIILNADAEESLRHLIYEVASRS 404 (463)
Q Consensus 331 ss~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~~~r~--~----~~~il~~~~e~~l~~~~ye~~~~~ 404 (463)
+-.+||..+..+ +++.+|.+. ++|||-|+.+.-.++. | -+|+. +-+..+.++. +..+.
T Consensus 133 ~y~~~K~~l~~~------~~ldAY~~v------i~aLhh~ArL~vie~G~~pe~tvw~qv~--~i~~~iyKLy-eEL~~- 196 (290)
T 3c18_A 133 RFQDGRNLFSRG------NYYDAYTHV------HHALHHLARLSVLEKGAHPEVVVWEQAR--LDDPDVYKLY-EQLLL- 196 (290)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHH------HHHHHHHHHHHHHHTTCCCCTTHHHHHH--HHCHHHHHHH-HHHHT-
T ss_pred HHHHHHHHHHCC------CcHHHHHHH------HHHHHHHHHhheeccCCcCchhHHHHHH--hcCHHHHHHH-HHHhc-
Confidence 345788888863 444444443 6778888886643221 1 22222 1112244444 77766
Q ss_pred CCCChh----HHHHHHh--cCCHHHHHHHHHHHHHhhcC--chhHHHhhhccchhHhh
Q 012448 405 SKLTPS----GLFLSVL--QQAAEIRLAGYRMITGLVAR--PWCLMELCSKQEIINTV 454 (463)
Q Consensus 405 ~~~~p~----~~~~~~~--qpF~elr~A~~~~l~~l~~~--~Wg~~~i~~~~gfie~l 454 (463)
+..|+ ++++-.+ -=-..++.++-.++.-|-.+ ||...+|.+.|+|-+|=
T Consensus 197 -s~E~lekrielllla~Ef~I~sk~~~~~~~Ll~~m~ek~~~wS~~Ei~~~p~~~~~~ 253 (290)
T 3c18_A 197 -SEETLEQRIHLALIGLEHLLQSKVLSGGKYLFEVMRERDRPWTMHELMEESRLTELK 253 (290)
T ss_dssp -CCSCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTSSSCEEHHHHHHCGGGGGGH
T ss_pred -CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHhcCccccccc
Confidence 34554 3454444 22467899999999999998 79999999999997763
No 131
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=48.09 E-value=1.1e+02 Score=26.77 Aligned_cols=74 Identities=5% Similarity=-0.018 Sum_probs=55.3
Q ss_pred hchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC-CchHHHHHHHHHHHHHhC
Q 012448 79 PHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN-GNEEVATASMDAIKKLAG 155 (463)
Q Consensus 79 ~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d-~d~~va~~A~~~L~~lak 155 (463)
......|..=|.|.+|.|.-+|+.-+-.++.|.+ .. ....+.+.+++.-++..+.. .+..|.+.+...+..-+.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG--~~-Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCG--KI-FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTC--HH-HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh--HH-HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 3456678888899999999999999999999974 22 45455666666666555543 567899999888877654
No 132
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=46.56 E-value=1.5e+02 Score=26.06 Aligned_cols=76 Identities=7% Similarity=0.010 Sum_probs=59.7
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC------CchHHHHHHHHHHH
Q 012448 78 IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN------GNEEVATASMDAIK 151 (463)
Q Consensus 78 ~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d------~d~~va~~A~~~L~ 151 (463)
.......|..=|+|.++.|.-+|+.-+-.++.|.+ .. ....+.+.+++.-++..+.. .+..|.+.++..+.
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG--~~-Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 124 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCG--RR-FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLY 124 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH--HH-HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC--HH-HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 34456788888999999999999999999999973 23 55567777788888877752 46789999999888
Q ss_pred HHhCC
Q 012448 152 KLAGF 156 (463)
Q Consensus 152 ~lak~ 156 (463)
.-+..
T Consensus 125 ~W~~~ 129 (171)
T 1juq_A 125 SWTMA 129 (171)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
No 133
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=43.80 E-value=28 Score=32.80 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=12.3
Q ss_pred cCCChhhhhHHHHHHHh
Q 012448 312 QSQDSDECESALEALGQ 328 (463)
Q Consensus 312 ~~~d~~~~~~A~dtlG~ 328 (463)
++++..++..|...||.
T Consensus 227 ~D~~~~VR~aa~~~L~~ 243 (244)
T 1lrv_A 227 DEPDPEVRLAIAGRLGI 243 (244)
T ss_dssp CCCCHHHHHHHHCCC--
T ss_pred cCCCHHHHHHHHHHhCC
Confidence 77888888888887763
No 134
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=42.92 E-value=80 Score=29.07 Aligned_cols=80 Identities=15% Similarity=0.207 Sum_probs=57.1
Q ss_pred ChHHHHHHHhcCChHHHHHccccCCCCc---------chHHHHHHHHHHHhccccccc---hhhchHHHHHHhhcCCCHH
Q 012448 28 NDAAAKKFLDRFPLSVILNTLQTKPDVP---------GLEDTLVVCLERIFKTKYGAS---LIPHYMPFVQVGLTADSHS 95 (463)
Q Consensus 28 s~~~~~~~~~~~~l~~L~~~L~~~~~~~---------~~~~~~~~vL~~il~~~~~~~---l~~~~~~~l~~gL~h~~~~ 95 (463)
+-+=+++| ....+..|++.|..-.+.+ ...-.+.-||+.++....|.. -.+++...|..+|.++++.
T Consensus 33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~ 111 (233)
T 2f31_A 33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPN 111 (233)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHH
T ss_pred CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence 55677888 4667778888887532111 112234449999998887753 2456789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 012448 96 VKRLACKTVTCLL 108 (463)
Q Consensus 96 Vr~Lal~~l~~i~ 108 (463)
+|..++.-+..+.
T Consensus 112 ~r~~~leLL~~lc 124 (233)
T 2f31_A 112 MMIDAAKLLSALC 124 (233)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988776644
No 135
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=41.58 E-value=61 Score=37.00 Aligned_cols=165 Identities=20% Similarity=0.124 Sum_probs=83.3
Q ss_pred chHHHHHHHhccc--ccchhhhhhhhhHhhhhccccccchhcchhhh-hhhHHHHHHHhccccCCChhhhhHHHHHHHhh
Q 012448 253 TLLQLLCSLIGNS--ATETILRSRAIMISGRLLSKDDSHMFIDESSA-KTVISAIDGRLGFLQSQDSDECESALEALGQI 329 (463)
Q Consensus 253 gi~~~L~~~i~~~--~~dpl~r~~aili~g~i~~f~~~~~~~~~~~~-k~~p~~l~~~f~~~~~~d~~~~~~A~dtlG~I 329 (463)
..+..+.+++... ..+|.+|.-++|..|-+.- ... .-...|. ...+.+.+.+-+.++..|...+-.++-+||++
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~--k~c-~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVF--RYC-ANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHH--HHH-TTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHH--HHh-ccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 3455555555543 3677766556665555543 111 0001121 12444555554566778899999999999999
Q ss_pred cCCHHHHHHHhhcCchhHHHHHHHHHhh----ccchh---hHhHHhhhHHHhcCCCchhhhh-----h--hhhHHHHHHH
Q 012448 330 GSSIQGATLLLLCLPPAARHVIDAAFDR----QGHGK---QLAALHGLANIAGKTRSEDKII-----L--NADAEESLRH 395 (463)
Q Consensus 330 gss~eGk~~L~~~~~~~~~~~l~~~~~~----~~~~~---k~r~L~al~~Il~~~r~~~~~i-----l--~~~~e~~l~~ 395 (463)
|... .-..|.+ +... ..+.+ |+.|+.||..+-.......+.+ . ..+.|.|+
T Consensus 468 g~p~-~l~~l~~------------~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n~~e~~EvRi-- 532 (1056)
T 1lsh_A 468 GQPN-SIKKIQR------------FLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIKSELRI-- 532 (1056)
T ss_dssp TCGG-GHHHHHT------------TSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHCTTSCHHHHH--
T ss_pred CChh-HHHHHHH------------hhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCChHHHH--
Confidence 9832 2222322 1111 11111 3446666655543220001111 0 12333333
Q ss_pred HHHHHHhhCCCCChhHHHHH---Hh--cCCHHHHHHHHHHHHHhhcC
Q 012448 396 LIYEVASRSSKLTPSGLFLS---VL--QQAAEIRLAGYRMITGLVAR 437 (463)
Q Consensus 396 ~~ye~~~~~~~~~p~~~~~~---~~--qpF~elr~A~~~~l~~l~~~ 437 (463)
.-|..+.++ ..+..++.. .. -|-.+++-..|..|+.++.-
T Consensus 533 aA~~~Lm~t--~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 533 RSCIVFFES--KPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HHHHHHHHT--CCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH--CcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 333444441 223333333 33 47889999999999999876
No 136
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=41.05 E-value=1.4e+02 Score=28.22 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=49.8
Q ss_pred cchhhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHH
Q 012448 75 ASLIPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKL 153 (463)
Q Consensus 75 ~~l~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~l 153 (463)
+.+++++.+.+..=-..++..||+.++.=+....... .. ++- .+++.+...+.|++..|.+.|+.+...+
T Consensus 48 p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k---~~-l~~-----~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 48 AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK---VE-LLP-----HVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GG-GHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH---HH-HHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3588888887777556689999999988887765433 11 111 2455566677899999999999876655
No 137
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=39.46 E-value=1.1e+02 Score=28.21 Aligned_cols=74 Identities=11% Similarity=0.064 Sum_probs=53.5
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhc-CCchHHHHHHHHHHHHHh
Q 012448 78 IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLI-NGNEEVATASMDAIKKLA 154 (463)
Q Consensus 78 ~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~-d~d~~va~~A~~~L~~la 154 (463)
.......|..=|+|++|.|.-+|+.-+..+++|.+. . ....+.+.+.+..++..++ ..+..|.+.++..+..-+
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~--~-f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQ--T-VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCH--H-HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcch--H-HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 345677888889999999999999999999998742 2 4445555555554443332 356778888888887765
No 138
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=39.32 E-value=1.8e+02 Score=24.89 Aligned_cols=76 Identities=7% Similarity=0.048 Sum_probs=60.3
Q ss_pred hhchHHHHHHhhcCCCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcC------CchHHHHHHHHHHH
Q 012448 78 IPHYMPFVQVGLTADSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLIN------GNEEVATASMDAIK 151 (463)
Q Consensus 78 ~~~~~~~l~~gL~h~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d------~d~~va~~A~~~L~ 151 (463)
.......|..=|+|++|.|.-+|+.-+-.++.|.+ .. ....+.+.+++.-++..+.. .+..|.......+.
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG--~~-fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCG--EK-FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILF 112 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC--HH-HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC--HH-HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHH
Confidence 34456778888999999999999999999999974 23 55677777888888877764 47789999999888
Q ss_pred HHhCC
Q 012448 152 KLAGF 156 (463)
Q Consensus 152 ~lak~ 156 (463)
.-+..
T Consensus 113 ~W~~~ 117 (148)
T 1mhq_A 113 SWTVW 117 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77644
No 139
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=36.97 E-value=35 Score=34.34 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHHHHhCCCC
Q 012448 93 SHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIKKLAGFPN 158 (463)
Q Consensus 93 ~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~~lak~~~ 158 (463)
+......+++.+..+..+. .+ +...+..++.+..|+.||..+...+.+.|.++|..++-.+.
T Consensus 133 d~~~q~~~l~CLkalmN~~---~G-~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~ 194 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNK---FG-IKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 194 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSH---HH-HHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCS
T ss_pred hHHHHHHHHHHHHHHhcch---hh-HHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcC
Confidence 4466667777777776655 55 77788888899999999999999999999999999997764
No 140
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=34.19 E-value=98 Score=26.30 Aligned_cols=89 Identities=10% Similarity=0.082 Sum_probs=54.0
Q ss_pred cHHHHHHhhcCCchHHHHHHHHHHHHHhCCCCCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHH-
Q 012448 127 IYPLLLDCLINGNEEVATASMDAIKKLAGFPNGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVAS- 205 (463)
Q Consensus 127 l~~~li~~l~d~d~~va~~A~~~L~~lak~~~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~- 205 (463)
.+.-|++.|.... .-++.|+.+|++= +.+.|..+.+|.+.++-.+.+--...|.
T Consensus 25 ~ileicD~I~~~~-~~~k~a~rai~Kr------------------------l~~~n~~~ql~AL~LLe~~vkNcG~~f~~ 79 (140)
T 3ldz_A 25 LILDICDKVGQSR-TGPKDCLRSIMRR------------------------VNHKDPHVAMQALTLLGACVSNCGKIFHL 79 (140)
T ss_dssp HHHHHHHHHTTST-THHHHHHHHHHHH------------------------HTCSSHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHCCC-cCHHHHHHHHHHH------------------------HcCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4445556666544 3456666666543 3344555566666666555555433333
Q ss_pred HHHhhccHHHHHhhcCCCCcHHHHHhHHHHHHHHHh
Q 012448 206 VIFKANLLTLLEEGVSKKNDTLETLSILELLYELAE 241 (463)
Q Consensus 206 ~v~~sgl~~~ll~eL~~~~DvLv~lnalell~eLa~ 241 (463)
.+.+..+++.+..-++. .|.-|+--+++++.+.+.
T Consensus 80 evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 80 EVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHH
Confidence 33444555666555555 788899999999998887
No 141
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=33.17 E-value=1.5e+02 Score=25.69 Aligned_cols=61 Identities=10% Similarity=0.076 Sum_probs=43.3
Q ss_pred CCchhHHHHHHHHHHHHhcCHHHHH-HHHhhccHHH-HHhhcCC--CCcHHHHHhHHHHHHHHHh
Q 012448 181 CSSLGRVRVLSLIVKLFSVSRSVAS-VIFKANLLTL-LEEGVSK--KNDTLETLSILELLYELAE 241 (463)
Q Consensus 181 ~~~~vR~Rv~el~v~ia~~S~~~~~-~v~~sgl~~~-ll~eL~~--~~DvLv~lnalell~eLa~ 241 (463)
.|..+.+|.+.++=.+.+-.-..+. .+.+..+++. ++.-+.. ..+.-||--+++++.+-+.
T Consensus 66 ~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 66 KNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 5666777888888777777644444 3566677777 5666632 2467899999999999887
No 142
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=33.06 E-value=7.4 Score=44.38 Aligned_cols=121 Identities=13% Similarity=0.106 Sum_probs=76.8
Q ss_pred HHHHHHhcCChHHHHHccccCCCCcchHHH-HHHHHHHHhccccccchhhchHHHHHHhhc-CCCHHHHHHHHHHHHHHH
Q 012448 31 AAKKFLDRFPLSVILNTLQTKPDVPGLEDT-LVVCLERIFKTKYGASLIPHYMPFVQVGLT-ADSHSVKRLACKTVTCLL 108 (463)
Q Consensus 31 ~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~-~~~vL~~il~~~~~~~l~~~~~~~l~~gL~-h~~~~Vr~Lal~~l~~i~ 108 (463)
..-+++...-+|.|+...+..+ +.+.... +..++..+-....+.+..+.+.+.+..-.+ +++= +|..++.-+....
T Consensus 752 ~l~~~~~~~llP~ll~l~~~~d-~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~ 829 (997)
T 1vsy_5 752 LLVPYLVDYVLPFLIGLVKHKD-VCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFL 829 (997)
T ss_dssp HHHHHHTTTTTTTTCTTSSCSH-HHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHhhcCc-HHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHH
Confidence 3555666667888877766553 2233333 334666664555555566666666666555 5666 8888888776665
Q ss_pred hCCchhHHHHHHHhhccCcHHHHHHhhcCCc-hHHHHHHHHHHHHHhCCC
Q 012448 109 EDSDLEASCALQLLIDYEIYPLLLDCLINGN-EEVATASMDAIKKLAGFP 157 (463)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d-~~va~~A~~~L~~lak~~ 157 (463)
-++-. . +..- ....+...++.+|.|+. .+|...|+.+|+-|-+..
T Consensus 830 f~n~f--~-l~~~-~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 830 SAELL--Q-LTEE-EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHTT--T-SCTT-HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHH--H-cCHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 43310 0 0000 01257888889999999 999999999999886553
No 143
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=31.41 E-value=1.2e+02 Score=30.54 Aligned_cols=99 Identities=8% Similarity=0.049 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhCCC-CCccccccCCCcchhhHhhHhhcCCchhHHHHHHHHHHHHhcCHHHHHHHHhhccHHHHHhhc
Q 012448 142 VATASMDAIKKLAGFP-NGIDIIFPADNKAATDLGNLVAQCSSLGRVRVLSLIVKLFSVSRSVASVIFKANLLTLLEEGV 220 (463)
Q Consensus 142 va~~A~~~L~~lak~~-~~l~~l~~~~~~~~~~L~~~~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~sgl~~~ll~eL 220 (463)
.+-...+-+.++.-+. |. ++ +++++ .+-......+..+|.-+-+++.+.++...+.+..++ +.+..-|
T Consensus 41 ~Kl~~L~q~~EL~l~~dps---Ll-~~fl~--~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l-----~~L~~LL 109 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT---LL-DNFLD--EIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLI-----ANLNMLL 109 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG---GG-GGGHH--HHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHH---HH-HHHHH--HHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 4555556666653322 22 22 24555 555566778899999999999999998888876654 4444445
Q ss_pred CCCCcHHHHHhHHHHHHHHHhhHHHHHHHHhcch
Q 012448 221 SKKNDTLETLSILELLYELAEIQHSAEFLSRTTL 254 (463)
Q Consensus 221 ~~~~DvLv~lnalell~eLa~t~~g~~~L~~~gi 254 (463)
.+ +|+-|.+.++.+...+ ++...+|+.+.+.
T Consensus 110 ~d-~d~~V~K~~I~~~tsl--Ypl~f~~i~~~~~ 140 (386)
T 3o2t_A 110 RD-ENVNVVKKAILTMTQL--YKVALQWMVKSRV 140 (386)
T ss_dssp TC-SSHHHHHHHHHHHHHH--HHHHHHHHHHC-C
T ss_pred cC-CCHHHHHHHHHHHHHH--HHHHHHHHhcCCC
Confidence 67 8999999999887654 5677788877655
No 144
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=27.97 E-value=5.2e+02 Score=26.70 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=39.8
Q ss_pred CCChhhhhHHHHHHHhhcC-CHHHHHHHhhcCchhHHHHHHHHHhhccchhhHhHHhhhHHHhc
Q 012448 313 SQDSDECESALEALGQIGS-SIQGATLLLLCLPPAARHVIDAAFDRQGHGKQLAALHGLANIAG 375 (463)
Q Consensus 313 ~~d~~~~~~A~dtlG~Igs-s~eGk~~L~~~~~~~~~~~l~~~~~~~~~~~k~r~L~al~~Il~ 375 (463)
++|+...++|.-=+|++.+ -++||..+.+- + .=..+|+.+.+. -..-|-.||.|+..++.
T Consensus 416 s~d~~~laVAc~Digefvr~~P~gr~i~~~l-g-~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 416 KQEKIIIQVALNDITHVVELLPESIDVLDKT-G-GKADIMELLNHS-DSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH-S-HHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEeecccHHHHHHHCcchhHHHHHc-C-cHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 5689999999999999998 89999999874 2 223333333221 11226667777766553
No 145
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=27.45 E-value=22 Score=34.93 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=80.4
Q ss_pred hcCCchHHHHHHHHHHHHHhCCCC-Cccccc-cCCCcchhhHhhHh--hcCCchhHHHHHHHHHHHHhcCHHHHHHHHhh
Q 012448 135 LINGNEEVATASMDAIKKLAGFPN-GIDIIF-PADNKAATDLGNLV--AQCSSLGRVRVLSLIVKLFSVSRSVASVIFKA 210 (463)
Q Consensus 135 l~d~d~~va~~A~~~L~~lak~~~-~l~~l~-~~~~~~~~~L~~~~--~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~s 210 (463)
+..+|.+--..|...|.+++.--. |++++- +.+ .|++++ +.....+|-++|-+++.--.-.|.+.+.|.+.
T Consensus 37 ~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~-----lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~ 111 (315)
T 3qml_C 37 LSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFA-----LLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINES 111 (315)
T ss_dssp CCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHH-----HHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHH-----HHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHh
Confidence 445577667778899999987665 777665 322 344333 45567789999999999999999999987663
Q ss_pred --ccHHHHHhhcCC-------CCcHHHHHhHHHHHHHHHhhHHHHHHHHhcchHHHHHHHhcccccchhhhhhhh
Q 012448 211 --NLLTLLEEGVSK-------KNDTLETLSILELLYELAEIQHSAEFLSRTTLLQLLCSLIGNSATETILRSRAI 276 (463)
Q Consensus 211 --gl~~~ll~eL~~-------~~DvLv~lnalell~eLa~t~~g~~~L~~~gi~~~L~~~i~~~~~dpl~r~~ai 276 (463)
.++..+..+|.+ +.| .+++-.+-+|-+|.++++ +| . ...++.|.++..-.+.|+-++.+++
T Consensus 112 ~p~fv~~lf~~L~~~~~~~~~~~~-~l~KR~LsII~~L~~~~~--~F-~-~~~m~~L~~ly~~~~~d~~~k~Kvl 181 (315)
T 3qml_C 112 FPNFKSKIMAALSNLNDSNHRSSN-ILIKRYLSILNELPVTSE--DL-P-IYSTVVLQNVYERNNKDKQLQIKVL 181 (315)
T ss_dssp CTTHHHHHHHHHHHHHCC--CCCH-HHHHHHHHHHHHSCCCST--TC----CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHhhcccchhH-HHHHHHHHHHHHHhcChH--hh-h-hccHHHHHHHHccCCCCHHHHHHHH
Confidence 222333322211 233 666777888888888652 22 2 2233444444432244665554443
No 146
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=26.46 E-value=3.1e+02 Score=23.56 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=55.9
Q ss_pred hhchHHHHHHhhcC-CCHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHH-HHHhhc---CCchHHHHHHHHHHHH
Q 012448 78 IPHYMPFVQVGLTA-DSHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPL-LLDCLI---NGNEEVATASMDAIKK 152 (463)
Q Consensus 78 ~~~~~~~l~~gL~h-~~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~-li~~l~---d~d~~va~~A~~~L~~ 152 (463)
.......|..=|+| +++.|.-+|+.-+-.++.|.+. . ....+.+.+++.- ++..+. ++...|.+.+...+..
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~--~-fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGH--R-FHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCH--H-HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCH--H-HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 33456778888875 8999999999999999999742 2 5556667677775 566663 4566899999988887
Q ss_pred HhC
Q 012448 153 LAG 155 (463)
Q Consensus 153 lak 155 (463)
-+.
T Consensus 128 W~~ 130 (157)
T 1elk_A 128 WAD 130 (157)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 147
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=25.15 E-value=2.1e+02 Score=24.44 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=49.2
Q ss_pred HhhcCCchhHHHHHHHHHHHHhcCHHHH-HHHHhhccHHHHHhhcCC-----CCcHHHHHhHHHHHHHHHh
Q 012448 177 LVAQCSSLGRVRVLSLIVKLFSVSRSVA-SVIFKANLLTLLEEGVSK-----KNDTLETLSILELLYELAE 241 (463)
Q Consensus 177 ~~~~~~~~vR~Rv~el~v~ia~~S~~~~-~~v~~sgl~~~ll~eL~~-----~~DvLv~lnalell~eLa~ 241 (463)
.+.+.|..+.+|.+.++=.+.+--...| ..+.+..+++.+..-+.+ +.+.-||--+++++.+-+.
T Consensus 46 rl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 46 KIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4456777778888888888777744444 566677888888877753 2589999999999999987
No 148
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=20.43 E-value=4.1e+02 Score=27.16 Aligned_cols=106 Identities=9% Similarity=0.133 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHHHhCCchhHHHHHHHhhccCcHHHHHHhhcCCchHHHHHHHHHHH------HHhCCCCCc-ccccc
Q 012448 93 SHSVKRLACKTVTCLLEDSDLEASCALQLLIDYEIYPLLLDCLINGNEEVATASMDAIK------KLAGFPNGI-DIIFP 165 (463)
Q Consensus 93 ~~~Vr~Lal~~l~~i~~~~~~~~~~~~~~~~~~~l~~~li~~l~d~d~~va~~A~~~L~------~lak~~~~l-~~l~~ 165 (463)
++.=..+-++++..+++..+. .. ....++ .++..+..|+..+.-.||..|+.... -+..+...+ .++|+
T Consensus 297 ns~KevlFL~eleeile~~~~-~e-f~~i~~--~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~p 372 (449)
T 2npp_B 297 HSPKEVMFLNELEEILDVIEP-SE-FVKIME--PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFP 372 (449)
T ss_dssp CHHHHHHHHHHHHHHHTTCCH-HH-HHHHHH--HHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhCCH-HH-HHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhchhhhHHhhHH
Confidence 444445667888888875522 11 222222 48889999999999999999987642 233332211 12221
Q ss_pred CCCcchhhHhhH-hhcCCchhHHHHHHHHHHHHhcCHHHHHHHHh
Q 012448 166 ADNKAATDLGNL-VAQCSSLGRVRVLSLIVKLFSVSRSVASVIFK 209 (463)
Q Consensus 166 ~~~~~~~~L~~~-~~~~~~~vR~Rv~el~v~ia~~S~~~~~~v~~ 209 (463)
.|.+. -.+=|..||--++.++-.+....+++++.|..
T Consensus 373 -------~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~~ 410 (449)
T 2npp_B 373 -------SLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQ 410 (449)
T ss_dssp -------HHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------HHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 22111 23448999999999999999999999998864
Done!