BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012449
(463 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family
Of Plant Myb-Related Dna Binding Motifs Of The
Arabidopsis Response Regulators
Length = 64
Score = 75.1 bits (183), Expect = 7e-14, Method: Composition-based stats.
Identities = 34/61 (55%), Positives = 48/61 (78%)
Query: 219 RKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRH 278
+KK +V WT ELH KF+ AV+ LGV++A+P +IL+LM V+ LTR NVASHLQK+R+ +
Sbjct: 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62
Query: 279 I 279
+
Sbjct: 63 V 63
>pdb|2C4X|A Chain A, Structural Basis For The Promiscuous Specificity Of The
Carbohydrate-Binding Modules From The Beta-Sandwich
Super Family
Length = 260
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 316 LVP-TGPVYPVW---GAPSNHLAAVQMWAPPGYPPWQQAESWN--WKPYPGMPADAWGCP 369
+VP T + +W GAP +AA+Q + P P W + WN WK Y + D W
Sbjct: 160 VVPGTTXTFRIWIPSGAP---IAAIQPYIXPHTPDWSEV-LWNSTWKGYTXVKTDDWNEI 215
Query: 370 VMPLPNGPYSSFPQGASGYHNSGVDDNSYAMPQNSVD 406
+ LP ++PQ G +D+ + + +++D
Sbjct: 216 TLTLPEDVDPTWPQ-QXGIQVQTIDEGEFTIYVDAID 251
>pdb|3CJN|A Chain A, Crystal Structure Of Transcriptional Regulator, Marr
Family, From Silicibacter Pomeroyi
Length = 162
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 243 VDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKED---DRKWPHAR 292
V+Q+ SR L+ ++ +GL R V S Q R R ++ P DR WPH R
Sbjct: 78 VEQSTLSRALDGLQADGLVRREVDSDDQ--RSSRVYLTPAGRAVYDRLWPHXR 128
>pdb|2C26|A Chain A, Structural Basis For The Promiscuous Specificity Of The
Carbohydrate-Binding Modules From The Beta-Sandwich
Super Family
Length = 260
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 316 LVP-TGPVYPVW---GAPSNHLAAVQMWAPPGYPPWQQAESWN--WKPYPGMPADAWGCP 369
+VP T + +W GAP +AA+Q + P P W + WN WK Y + D W
Sbjct: 160 VVPGTTMTFRIWIPSGAP---IAAIQPYIMPHTPDWSEV-LWNSTWKGYTMVKTDDWNEI 215
Query: 370 VMPLPNGPYSSFPQGASGYHNSGVDDNSYAMPQNSVD 406
+ LP ++PQ G +D+ + + +++D
Sbjct: 216 TLTLPEDVDPTWPQ-QMGIQVQTIDEGEFTIYVDAID 251
>pdb|1WY5|A Chain A, Crystal Structure Of Isoluecyl-Trna Lysidine Synthetase
pdb|1WY5|B Chain B, Crystal Structure Of Isoluecyl-Trna Lysidine Synthetase
pdb|2E21|A Chain A, Crystal Structure Of Tils In A Complex With Amppnp From
Aquifex Aeolicus.
pdb|2E21|B Chain B, Crystal Structure Of Tils In A Complex With Amppnp From
Aquifex Aeolicus.
pdb|2E21|C Chain C, Crystal Structure Of Tils In A Complex With Amppnp From
Aquifex Aeolicus.
pdb|2E21|D Chain D, Crystal Structure Of Tils In A Complex With Amppnp From
Aquifex Aeolicus.
pdb|2E89|A Chain A, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
With Atp, Magnesium Ion, And L-Lysine
pdb|2E89|C Chain C, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
With Atp, Magnesium Ion, And L-Lysine
pdb|2E89|D Chain D, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
With Atp, Magnesium Ion, And L-Lysine
pdb|2E89|B Chain B, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
With Atp, Magnesium Ion, And L-Lysine
Length = 317
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%)
Query: 84 VPQQSDNEQSVPNDKYPAPSTPQLKQGGRLLDDIDCQDNTNFSTEKESAEQDGESKFVET 143
V +++ E S+P ++ P+LK+ L+D + E+E E++ + + E
Sbjct: 189 VEDETNYEVSIPRNRIRHRVIPELKRINENLEDTFLKMVKVLRAEREFLEEEAQKLYKEV 248
Query: 144 TCGNSIAEGTLQEDKPQRPRETIVK 168
GN + L+E R I K
Sbjct: 249 KKGNCLDVKKLKEKPLALQRRVIRK 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,584,443
Number of Sequences: 62578
Number of extensions: 644449
Number of successful extensions: 1011
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1007
Number of HSP's gapped (non-prelim): 5
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)