Query 012449
Match_columns 463
No_of_seqs 221 out of 414
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 09:40:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 6.9E-29 2.4E-33 196.3 7.0 62 218-279 2-63 (64)
2 3kht_A Response regulator; PSI 95.7 0.0088 3E-07 47.6 3.9 42 5-46 94-136 (144)
3 3hdg_A Uncharacterized protein 95.5 0.0088 3E-07 47.1 3.4 42 5-46 92-133 (137)
4 2pl1_A Transcriptional regulat 95.1 0.013 4.4E-07 44.8 3.2 35 5-39 85-119 (121)
5 1k68_A Phytochrome response re 95.0 0.016 5.4E-07 45.0 3.4 37 5-41 98-134 (140)
6 3kto_A Response regulator rece 95.0 0.013 4.3E-07 46.6 2.8 38 5-42 93-130 (136)
7 2qv0_A Protein MRKE; structura 94.9 0.014 4.9E-07 46.2 2.9 40 6-45 95-134 (143)
8 1xhf_A DYE resistance, aerobic 94.7 0.017 5.7E-07 44.5 2.8 34 6-39 88-121 (123)
9 3cg0_A Response regulator rece 94.7 0.021 7.1E-07 44.8 3.4 41 5-45 95-135 (140)
10 3jte_A Response regulator rece 94.7 0.02 7E-07 45.3 3.3 36 5-40 90-125 (143)
11 1zgz_A Torcad operon transcrip 94.6 0.021 7E-07 43.9 3.1 34 6-39 87-120 (122)
12 2a9o_A Response regulator; ess 94.6 0.016 5.5E-07 44.1 2.4 34 5-38 85-118 (120)
13 3gt7_A Sensor protein; structu 94.5 0.02 7E-07 46.6 2.9 36 5-40 94-129 (154)
14 3t6k_A Response regulator rece 94.4 0.017 5.9E-07 46.1 2.3 35 5-39 91-125 (136)
15 3heb_A Response regulator rece 94.4 0.033 1.1E-06 44.8 4.0 36 5-40 102-137 (152)
16 3lua_A Response regulator rece 94.4 0.011 3.8E-07 46.8 1.2 37 5-41 94-130 (140)
17 2qzj_A Two-component response 94.4 0.024 8.3E-07 45.2 3.1 36 5-40 88-123 (136)
18 3b2n_A Uncharacterized protein 94.4 0.016 5.6E-07 45.8 2.1 36 5-40 90-125 (133)
19 1zh2_A KDP operon transcriptio 94.3 0.027 9.3E-07 42.9 3.1 33 6-38 86-118 (121)
20 1dz3_A Stage 0 sporulation pro 94.3 0.014 4.6E-07 45.7 1.4 35 5-39 90-124 (130)
21 3cg4_A Response regulator rece 94.3 0.018 6E-07 45.5 2.0 37 7-43 96-132 (142)
22 3i42_A Response regulator rece 94.2 0.012 4.1E-07 45.7 1.0 33 8-40 92-124 (127)
23 2yus_A SWI/SNF-related matrix- 94.2 0.098 3.3E-06 42.1 6.3 48 222-274 17-64 (79)
24 3cnb_A DNA-binding response re 94.2 0.02 7E-07 44.8 2.3 36 5-40 97-132 (143)
25 3h5i_A Response regulator/sens 94.1 0.015 5.3E-07 46.3 1.4 38 7-44 93-130 (140)
26 3grc_A Sensor protein, kinase; 94.1 0.017 5.7E-07 45.7 1.5 37 9-45 98-134 (140)
27 2zay_A Response regulator rece 93.9 0.034 1.2E-06 44.2 3.1 36 5-40 95-130 (147)
28 3cfy_A Putative LUXO repressor 93.8 0.042 1.4E-06 43.9 3.4 35 5-39 89-123 (137)
29 1dbw_A Transcriptional regulat 93.8 0.027 9.2E-07 43.8 2.2 32 6-37 89-120 (126)
30 3hv2_A Response regulator/HD d 93.7 0.045 1.5E-06 44.3 3.4 36 5-40 99-135 (153)
31 3nhm_A Response regulator; pro 93.7 0.022 7.5E-07 44.4 1.5 37 8-44 92-128 (133)
32 3crn_A Response regulator rece 93.6 0.046 1.6E-06 43.1 3.3 35 5-39 88-122 (132)
33 1i3c_A Response regulator RCP1 93.6 0.043 1.5E-06 44.3 3.1 36 5-40 104-139 (149)
34 2qr3_A Two-component system re 93.6 0.022 7.6E-07 44.6 1.4 36 5-40 93-128 (140)
35 1mvo_A PHOP response regulator 93.5 0.033 1.1E-06 43.5 2.4 33 7-39 90-122 (136)
36 3n53_A Response regulator rece 93.4 0.018 6.1E-07 45.6 0.6 35 6-40 90-124 (140)
37 2cu7_A KIAA1915 protein; nucle 93.2 0.16 5.6E-06 39.4 5.7 49 223-276 9-57 (72)
38 3hdv_A Response regulator; PSI 93.2 0.037 1.3E-06 43.4 2.1 34 5-38 94-127 (136)
39 2qxy_A Response regulator; reg 93.1 0.043 1.5E-06 43.4 2.4 36 5-40 88-123 (142)
40 2jba_A Phosphate regulon trans 93.1 0.025 8.6E-07 43.5 1.0 34 5-38 89-122 (127)
41 3eqz_A Response regulator; str 93.0 0.02 6.8E-07 44.4 0.3 34 5-38 92-125 (135)
42 3r0j_A Possible two component 93.0 0.056 1.9E-06 47.9 3.2 35 5-39 108-142 (250)
43 3lte_A Response regulator; str 93.0 0.041 1.4E-06 42.8 2.0 31 6-36 93-123 (132)
44 1qkk_A DCTD, C4-dicarboxylate 92.9 0.066 2.3E-06 43.2 3.3 36 5-40 88-123 (155)
45 3f6c_A Positive transcription 92.8 0.028 9.6E-07 43.8 0.9 33 6-38 88-120 (134)
46 1qo0_D AMIR; binding protein, 92.7 0.063 2.1E-06 45.4 2.9 34 5-38 92-125 (196)
47 2qsj_A DNA-binding response re 92.6 0.056 1.9E-06 43.4 2.5 34 5-38 91-124 (154)
48 2yum_A ZZZ3 protein, zinc fing 92.6 0.18 6.2E-06 39.1 5.3 52 223-276 8-62 (75)
49 3rqi_A Response regulator prot 92.4 0.035 1.2E-06 46.9 1.0 35 5-39 92-126 (184)
50 1s8n_A Putative antiterminator 92.1 0.064 2.2E-06 45.7 2.3 35 5-39 98-132 (205)
51 3eul_A Possible nitrate/nitrit 92.1 0.071 2.4E-06 42.9 2.4 34 5-38 102-135 (152)
52 3kcn_A Adenylate cyclase homol 92.1 0.096 3.3E-06 42.2 3.2 36 5-40 89-125 (151)
53 3cu5_A Two component transcrip 91.8 0.074 2.5E-06 42.6 2.2 33 7-39 92-124 (141)
54 1a04_A Nitrate/nitrite respons 91.5 0.088 3E-06 45.0 2.5 33 5-37 92-124 (215)
55 3cz5_A Two-component response 91.4 0.056 1.9E-06 43.5 1.1 33 5-37 92-124 (153)
56 2rjn_A Response regulator rece 91.3 0.13 4.6E-06 41.3 3.3 36 5-40 92-128 (154)
57 1kgs_A DRRD, DNA binding respo 90.8 0.11 3.7E-06 44.5 2.4 35 5-39 87-121 (225)
58 3dzd_A Transcriptional regulat 90.6 0.13 4.4E-06 50.2 3.0 36 5-40 85-120 (368)
59 1p2f_A Response regulator; DRR 90.4 0.15 5.1E-06 43.8 2.9 34 5-38 84-117 (220)
60 3q9s_A DNA-binding response re 90.3 0.094 3.2E-06 47.1 1.6 33 5-37 121-153 (249)
61 2oqr_A Sensory transduction pr 90.2 0.13 4.4E-06 44.3 2.3 34 5-38 88-121 (230)
62 1yio_A Response regulatory pro 89.9 0.16 5.5E-06 43.1 2.7 34 6-39 90-123 (208)
63 2iw5_B Protein corest, REST co 89.4 0.37 1.3E-05 46.6 5.0 51 220-275 130-180 (235)
64 3c3w_A Two component transcrip 89.2 0.14 4.9E-06 44.7 1.9 35 5-39 88-122 (225)
65 3eq2_A Probable two-component 89.2 0.21 7E-06 47.6 3.1 35 5-39 90-125 (394)
66 2hzd_A Transcriptional enhance 88.9 0.57 2E-05 38.8 5.2 55 221-278 4-77 (82)
67 1ys7_A Transcriptional regulat 88.5 0.15 5.1E-06 43.9 1.5 34 7-40 94-127 (233)
68 1ny5_A Transcriptional regulat 88.4 0.23 8E-06 48.5 2.9 35 5-39 85-119 (387)
69 1x41_A Transcriptional adaptor 88.3 0.82 2.8E-05 34.3 5.3 47 223-274 8-55 (60)
70 2jk1_A HUPR, hydrogenase trans 88.2 0.32 1.1E-05 38.4 3.2 33 6-38 86-119 (139)
71 3bre_A Probable two-component 88.2 0.28 9.7E-06 45.3 3.3 33 5-37 106-138 (358)
72 2xag_B REST corepressor 1; ami 88.2 0.49 1.7E-05 49.6 5.3 51 221-276 378-428 (482)
73 1w25_A Stalked-cell differenti 88.1 0.27 9.2E-06 47.5 3.2 34 5-38 88-121 (459)
74 2hqr_A Putative transcriptiona 88.0 0.14 4.7E-06 44.1 1.0 32 5-36 81-113 (223)
75 3klo_A Transcriptional regulat 87.9 0.14 4.8E-06 44.5 1.0 32 6-37 97-128 (225)
76 3c3m_A Response regulator rece 87.8 0.13 4.4E-06 40.8 0.6 30 9-38 94-123 (138)
77 3sy8_A ROCR; TIM barrel phosph 86.1 0.32 1.1E-05 47.0 2.5 34 6-39 96-129 (400)
78 2gwr_A DNA-binding response re 84.8 0.21 7.2E-06 43.8 0.4 30 6-35 90-119 (238)
79 2cqr_A RSGI RUH-043, DNAJ homo 84.3 3.2 0.00011 33.1 7.0 49 223-273 18-67 (73)
80 1ity_A TRF1; helix-turn-helix, 83.9 2.2 7.6E-05 32.6 5.8 58 218-281 5-63 (69)
81 2elk_A SPCC24B10.08C protein; 83.4 1.6 5.4E-05 32.7 4.6 47 224-274 10-57 (58)
82 3t8y_A CHEB, chemotaxis respon 83.3 0.19 6.5E-06 41.5 -0.5 24 6-29 114-137 (164)
83 2eqr_A N-COR1, N-COR, nuclear 79.3 4.6 0.00016 30.5 6.0 51 219-277 8-58 (61)
84 3c97_A Signal transduction his 78.2 0.6 2.1E-05 36.9 0.8 25 12-36 104-128 (140)
85 2d9a_A B-MYB, MYB-related prot 78.1 4.6 0.00016 29.9 5.6 47 221-272 6-53 (60)
86 1guu_A C-MYB, MYB proto-oncoge 76.8 3.8 0.00013 29.4 4.7 45 223-272 3-48 (52)
87 2cqq_A RSGI RUH-037, DNAJ homo 76.3 4.6 0.00016 32.0 5.5 44 225-273 10-56 (72)
88 3sjm_A Telomeric repeat-bindin 76.3 4.3 0.00015 31.2 5.1 50 222-277 10-60 (64)
89 2yqk_A Arginine-glutamic acid 75.0 6.3 0.00022 30.1 5.7 53 219-278 5-57 (63)
90 3luf_A Two-component system re 72.1 1.2 4.1E-05 40.5 1.2 22 5-26 87-108 (259)
91 1gvd_A MYB proto-oncogene prot 71.4 6.4 0.00022 28.3 4.8 45 223-272 3-48 (52)
92 2rdm_A Response regulator rece 70.7 1.5 5.1E-05 33.7 1.3 30 7-38 94-123 (132)
93 1a2o_A CHEB methylesterase; ba 69.7 2.3 8E-05 41.2 2.8 20 5-24 91-110 (349)
94 2roh_A RTBP1, telomere binding 68.9 11 0.00037 33.0 6.5 55 217-277 25-82 (122)
95 2dim_A Cell division cycle 5-l 67.3 11 0.00037 28.7 5.6 47 221-272 7-54 (70)
96 3cwo_X Beta/alpha-barrel prote 66.0 1.2 4.2E-05 38.0 -0.0 28 4-31 65-94 (237)
97 2cjj_A Radialis; plant develop 65.6 6 0.00021 32.8 4.1 47 225-275 10-59 (93)
98 1w0t_A Telomeric repeat bindin 62.3 14 0.00049 26.7 5.1 45 223-270 2-47 (53)
99 2aje_A Telomere repeat-binding 61.4 12 0.0004 31.9 5.1 54 218-277 8-64 (105)
100 2din_A Cell division cycle 5-l 60.7 13 0.00045 27.9 4.9 46 223-274 9-54 (66)
101 2ltp_A Nuclear receptor corepr 59.3 2.7 9.1E-05 34.1 0.0 47 223-274 16-62 (89)
102 2k9n_A MYB24; R2R3 domain, DNA 53.3 16 0.00053 29.9 4.5 47 223-274 53-99 (107)
103 1wgx_A KIAA1903 protein; MYB D 52.4 13 0.00046 29.9 3.8 46 225-272 10-56 (73)
104 2crg_A Metastasis associated p 51.8 30 0.001 26.9 5.7 52 220-278 5-56 (70)
105 1gv2_A C-MYB, MYB proto-oncoge 50.8 18 0.00061 29.1 4.4 43 223-270 56-98 (105)
106 1w25_A Stalked-cell differenti 49.9 10 0.00035 36.4 3.3 32 6-37 238-269 (459)
107 3osg_A MYB21; transcription-DN 45.5 31 0.0011 28.9 5.3 48 220-272 8-55 (126)
108 4eef_G F-HB80.4, designed hema 44.6 7.5 0.00026 31.8 1.2 45 225-271 22-67 (74)
109 1h8a_C AMV V-MYB, MYB transfor 43.7 24 0.00082 29.5 4.2 43 223-270 79-121 (128)
110 2llk_A Cyclin-D-binding MYB-li 39.9 43 0.0015 26.6 4.9 44 220-269 20-63 (73)
111 1gv2_A C-MYB, MYB proto-oncoge 38.7 41 0.0014 27.0 4.8 46 223-272 4-49 (105)
112 2vyc_A Biodegradative arginine 38.0 12 0.0004 40.2 1.8 30 9-39 103-134 (755)
113 3osg_A MYB21; transcription-DN 37.2 41 0.0014 28.2 4.7 43 224-271 63-105 (126)
114 2xvy_A Chelatase, putative; me 37.1 19 0.00063 33.1 2.8 42 412-453 26-82 (269)
115 1h89_C C-MYB, MYB proto-oncoge 36.6 50 0.0017 28.5 5.3 43 223-270 110-152 (159)
116 2juh_A Telomere binding protei 35.9 54 0.0019 28.5 5.3 54 218-277 12-68 (121)
117 2k9n_A MYB24; R2R3 domain, DNA 33.5 55 0.0019 26.6 4.8 40 224-268 2-42 (107)
118 1x58_A Hypothetical protein 49 33.4 1.3E+02 0.0043 23.7 6.5 53 221-279 6-59 (62)
119 3zqc_A MYB3; transcription-DNA 32.3 39 0.0013 28.4 3.8 43 225-272 56-98 (131)
120 3lyh_A Cobalamin (vitamin B12) 30.7 32 0.0011 28.1 2.9 41 412-453 25-65 (126)
121 2ckx_A NGTRF1, telomere bindin 29.6 67 0.0023 26.0 4.6 47 225-277 2-51 (83)
122 3b73_A PHIH1 repressor-like pr 28.1 76 0.0026 26.6 4.9 49 223-274 7-55 (111)
123 3hu3_A Transitional endoplasmi 26.7 5.7 0.00019 40.5 -2.8 22 9-30 124-145 (489)
124 1h8a_C AMV V-MYB, MYB transfor 26.7 1E+02 0.0034 25.7 5.4 44 223-271 27-71 (128)
125 1wh5_A ZF-HD homeobox family p 24.9 1.6E+02 0.0055 23.0 5.9 60 218-277 16-77 (80)
126 1qgp_A Protein (double strande 23.9 60 0.002 25.2 3.2 44 226-272 11-55 (77)
127 3hug_A RNA polymerase sigma fa 23.9 30 0.001 26.8 1.5 49 229-280 26-85 (92)
128 2xwp_A Sirohydrochlorin cobalt 23.4 35 0.0012 31.6 2.1 22 432-453 56-77 (264)
129 1wh7_A ZF-HD homeobox family p 22.7 1.9E+02 0.0066 22.7 6.0 60 217-277 15-77 (80)
130 1h89_C C-MYB, MYB proto-oncoge 21.4 1.4E+02 0.0048 25.6 5.4 47 222-272 57-103 (159)
131 1or7_A Sigma-24, RNA polymeras 21.1 62 0.0021 26.9 3.0 49 229-280 129-188 (194)
132 3plv_C 66 kDa U4/U6.U5 small n 20.8 34 0.0011 22.0 1.0 7 431-437 14-20 (21)
133 3zqc_A MYB3; transcription-DNA 20.2 96 0.0033 26.0 4.0 43 225-272 4-47 (131)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=6.9e-29 Score=196.33 Aligned_cols=62 Identities=55% Similarity=0.923 Sum_probs=59.7
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchhhhhhccc
Q 012449 218 NRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 279 (463)
Q Consensus 218 ~~kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~ 279 (463)
+.+|+|++||+|||++||+||++||.++||||.||++|+|+|||++||||||||||++++++
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 46899999999999999999999999999999999999999999999999999999999875
No 2
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=95.66 E-value=0.0088 Score=47.64 Aligned_cols=42 Identities=7% Similarity=0.000 Sum_probs=35.9
Q ss_pred HHHHHHhhcchhhhhhcCC-CHHHHHHHHHHHHHHHHhcCCCC
Q 012449 5 QLFDNNFQLGAVEFLRKPL-SEDKLRNLWQHVVHKAFNAGGSA 46 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPl-r~neLkniWQHV~Rr~~~~~gs~ 46 (463)
+.+.+|+..||.+||.||+ ..++|...-+.+.++.....+..
T Consensus 94 ~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~~~~~~ 136 (144)
T 3kht_A 94 DRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLTVNHCQ 136 (144)
T ss_dssp HHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHhccCCC
Confidence 4567899999999999999 99999999999998877655444
No 3
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=95.52 E-value=0.0088 Score=47.08 Aligned_cols=42 Identities=24% Similarity=0.406 Sum_probs=34.6
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHHhcCCCC
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA 46 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~~~~gs~ 46 (463)
+.+.+++..||.+||.||+..++|...-+.+.++....++..
T Consensus 92 ~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~~~~~ 133 (137)
T 3hdg_A 92 KYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLAKEGHH 133 (137)
T ss_dssp HHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 356789999999999999999999999999988877655554
No 4
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=95.15 E-value=0.013 Score=44.84 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=30.1
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 39 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~ 39 (463)
..+.+++..||.|||.||+..++|...-+.+.++.
T Consensus 85 ~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 85 QDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 35578999999999999999999998888777664
No 5
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=95.01 E-value=0.016 Score=44.95 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=32.9
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHHh
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN 41 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~~ 41 (463)
+.+.+++..||.+||.||+..++|...-+.+.++.+.
T Consensus 98 ~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 134 (140)
T 1k68_A 98 DDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWLS 134 (140)
T ss_dssp HHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHcc
Confidence 4567899999999999999999999999999887764
No 6
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=95.00 E-value=0.013 Score=46.61 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=31.3
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHHhc
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNA 42 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~~~ 42 (463)
+.+.+|+..||.+||.||+..++|...-+.+++.....
T Consensus 93 ~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~~ 130 (136)
T 3kto_A 93 PTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKEG 130 (136)
T ss_dssp HHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCCC
Confidence 34678999999999999999999999888887776543
No 7
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=94.89 E-value=0.014 Score=46.17 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=32.5
Q ss_pred HHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHHhcCCC
Q 012449 6 LFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGS 45 (463)
Q Consensus 6 vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~~~~gs 45 (463)
.+.+++..||.+||.||+..++|...-+++.++.....+.
T Consensus 95 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~~~~ 134 (143)
T 2qv0_A 95 HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQNNA 134 (143)
T ss_dssp THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHhccch
Confidence 4568999999999999999999999999988776654433
No 8
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=94.73 E-value=0.017 Score=44.50 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=29.1
Q ss_pred HHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHH
Q 012449 6 LFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 39 (463)
Q Consensus 6 vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~ 39 (463)
.+.+++..||.+||.||++.++|...-+.+.++.
T Consensus 88 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 88 DKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp HHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 4568999999999999999999988777776654
No 9
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=94.73 E-value=0.021 Score=44.76 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=33.3
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHHhcCCC
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGS 45 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~~~~gs 45 (463)
..+.+++..||.+||.||+..++|...-+.+.++....+++
T Consensus 95 ~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~ 135 (140)
T 3cg0_A 95 ETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKLEEGH 135 (140)
T ss_dssp HHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccccCCCC
Confidence 34668999999999999999999999989988776654433
No 10
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=94.69 E-value=0.02 Score=45.29 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=31.1
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
+.+.+++..||.+||.||+..++|...-+.+.++..
T Consensus 90 ~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 125 (143)
T 3jte_A 90 DNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKK 125 (143)
T ss_dssp HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHH
Confidence 346689999999999999999999999988876543
No 11
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=94.61 E-value=0.021 Score=43.91 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=28.9
Q ss_pred HHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHH
Q 012449 6 LFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 39 (463)
Q Consensus 6 vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~ 39 (463)
.+.+|+..||.|||.||+..++|...-..+.|+.
T Consensus 87 ~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 87 DRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp HHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 4568999999999999999999988777776653
No 12
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=94.58 E-value=0.016 Score=44.06 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=28.4
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 38 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr 38 (463)
..+.+++..||.+||.||++.++|...-..+.++
T Consensus 85 ~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 85 FDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp HHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 3456899999999999999999998876666654
No 13
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=94.48 E-value=0.02 Score=46.61 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=31.1
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
+.+.+|+..||.+||.||+...+|...-..+.++..
T Consensus 94 ~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 94 RDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp HHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999888876654
No 14
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=94.44 E-value=0.017 Score=46.10 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=28.8
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 39 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~ 39 (463)
..+.+++..||.|||.||+...+|...-+.+.++.
T Consensus 91 ~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 91 SAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp HHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 34568999999999999999999998777766554
No 15
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=94.43 E-value=0.033 Score=44.82 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=30.6
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
+.+.+|+..||.+||.||+..++|...-+.+.+...
T Consensus 102 ~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 137 (152)
T 3heb_A 102 REIQRCYDLGANVYITKPVNYENFANAIRQLGLFFS 137 (152)
T ss_dssp HHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 356689999999999999999999999888865443
No 16
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=94.42 E-value=0.011 Score=46.84 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=30.1
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHHh
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN 41 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~~ 41 (463)
+.+.+|+..||.+||.||+..++|...-..+.++...
T Consensus 94 ~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (140)
T 3lua_A 94 GYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR 130 (140)
T ss_dssp HHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred HHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence 4567999999999999999999999988887766543
No 17
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=94.39 E-value=0.024 Score=45.22 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=30.3
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
..+.+++..||.|||.||+..++|...-..+.++..
T Consensus 88 ~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 123 (136)
T 2qzj_A 88 QSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMN 123 (136)
T ss_dssp HHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhh
Confidence 356689999999999999999999988777776543
No 18
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=94.38 E-value=0.016 Score=45.77 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=28.7
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
..+.+++..||.+||.||+..++|...-+.+.++..
T Consensus 90 ~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 125 (133)
T 3b2n_A 90 GYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEK 125 (133)
T ss_dssp HHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCC
Confidence 356789999999999999999999988777765543
No 19
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=94.29 E-value=0.027 Score=42.86 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=28.5
Q ss_pred HHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHH
Q 012449 6 LFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 38 (463)
Q Consensus 6 vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr 38 (463)
.+.+++..||.+||.||+...+|...-..+.++
T Consensus 86 ~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 86 DKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (121)
T ss_dssp HHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHh
Confidence 456899999999999999999999877777665
No 20
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=94.27 E-value=0.014 Score=45.74 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=29.2
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 39 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~ 39 (463)
+.+.+++..||.+||.||+..++|...-+.+.|+.
T Consensus 90 ~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 90 DVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp HHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 45678999999999999999999988766666543
No 21
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=94.27 E-value=0.018 Score=45.46 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=31.0
Q ss_pred HHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHHhcC
Q 012449 7 FDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAG 43 (463)
Q Consensus 7 v~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~~~~ 43 (463)
+.+++..||.+||.||+..++|...-++++++.....
T Consensus 96 ~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~ 132 (142)
T 3cg4_A 96 KMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRNQT 132 (142)
T ss_dssp SSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhhcc
Confidence 3478899999999999999999999999887765433
No 22
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=94.24 E-value=0.012 Score=45.68 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=26.5
Q ss_pred HHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 8 DNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 8 ~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
.+++..||.+||.||++.++|..-.+|.|++..
T Consensus 92 ~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 92 GKEACELFDFYLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp CHHHHHHCSEEEESSCCHHHHHHHHHHHC----
T ss_pred HHHHHHhhHHheeCCCCHHHHHHHHHHhhccCC
Confidence 467899999999999999999999888887654
No 23
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=94.22 E-value=0.098 Score=42.13 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=40.3
Q ss_pred CcccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchhhh
Q 012449 222 MKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRM 274 (463)
Q Consensus 222 ~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl 274 (463)
.+-.||.|-+++|++||+++|.+. +.|-+.|+ +-|..+++.|-++|-+
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~~W---~~IA~~v~--~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKDDW---NKVSEHVG--SRTQDECILHFLRLPI 64 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSSCH---HHHHHHHS--SCCHHHHHHHHTTSCC
T ss_pred cCCCcCHHHHHHHHHHHHHhCCCH---HHHHHHcC--CCCHHHHHHHHHHhcc
Confidence 356899999999999999999444 77888774 7999999999988744
No 24
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=94.20 E-value=0.02 Score=44.80 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=30.8
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
..+.+++..||.+||.||+..++|...-+.+.++..
T Consensus 97 ~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 97 DNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 345689999999999999999999998888876644
No 25
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=94.12 E-value=0.015 Score=46.31 Aligned_cols=38 Identities=11% Similarity=0.025 Sum_probs=32.0
Q ss_pred HHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHHhcCC
Q 012449 7 FDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG 44 (463)
Q Consensus 7 v~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~~~~g 44 (463)
+.+++..||.+||.||+..++|...-+.+.++......
T Consensus 93 ~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~~~ 130 (140)
T 3h5i_A 93 VEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEANVH 130 (140)
T ss_dssp CGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 45789999999999999999999999998877654433
No 26
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=94.07 E-value=0.017 Score=45.65 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=29.8
Q ss_pred HHhhcchhhhhhcCCCHHHHHHHHHHHHHHHHhcCCC
Q 012449 9 NNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGS 45 (463)
Q Consensus 9 Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~~~~gs 45 (463)
+++..||.+||.||+..++|...-+.+.++....++.
T Consensus 98 ~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~~~~~ 134 (140)
T 3grc_A 98 NSQPLAVSTWLEKPIDENLLILSLHRAIDNMAEGKEG 134 (140)
T ss_dssp CCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-----
T ss_pred HhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCCCCcc
Confidence 7899999999999999999999999988877654443
No 27
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=93.92 E-value=0.034 Score=44.21 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=31.0
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
+.+.+++..||.+||.||+...+|...-+.+.++..
T Consensus 95 ~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 95 KEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp HHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 356689999999999999999999998888876653
No 28
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.77 E-value=0.042 Score=43.88 Aligned_cols=35 Identities=34% Similarity=0.488 Sum_probs=29.3
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 39 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~ 39 (463)
+.+.+++..||.|||.||+..++|...=+.+.++.
T Consensus 89 ~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 123 (137)
T 3cfy_A 89 DLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRA 123 (137)
T ss_dssp HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 45668999999999999999999988777766553
No 29
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=93.77 E-value=0.027 Score=43.79 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=26.9
Q ss_pred HHHHHhhcchhhhhhcCCCHHHHHHHHHHHHH
Q 012449 6 LFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 37 (463)
Q Consensus 6 vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~R 37 (463)
.+.+++..||.+||.||+...+|...-+.+.+
T Consensus 89 ~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 89 MAVEAMKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp HHHHHHHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 56689999999999999999999877555544
No 30
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=93.71 E-value=0.045 Score=44.25 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=31.0
Q ss_pred HHHHHHhhcc-hhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLG-AVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 5 ~vv~Kcl~~G-A~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
+.+.+++..| |.+||.||+..++|...-..++++..
T Consensus 99 ~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~ 135 (153)
T 3hv2_A 99 KLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQH 135 (153)
T ss_dssp HHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhH
Confidence 3566899999 99999999999999999888876654
No 31
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=93.68 E-value=0.022 Score=44.42 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=28.5
Q ss_pred HHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHHhcCC
Q 012449 8 DNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG 44 (463)
Q Consensus 8 ~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~~~~g 44 (463)
.+++..||.+||.||++.++|...-..+.++....++
T Consensus 92 ~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~~~ 128 (133)
T 3nhm_A 92 GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEAEGH 128 (133)
T ss_dssp --TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC----
T ss_pred HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcccCC
Confidence 5889999999999999999999998888877655443
No 32
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=93.61 E-value=0.046 Score=43.09 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=29.0
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 39 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~ 39 (463)
..+.+++..||.+||.||+...+|...=..+.++.
T Consensus 88 ~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 122 (132)
T 3crn_A 88 ENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQ 122 (132)
T ss_dssp HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcc
Confidence 34568999999999999999999988767666554
No 33
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=93.57 E-value=0.043 Score=44.28 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=30.7
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
+.+.+++..||.+||.||+..++|...=+.+.|..+
T Consensus 104 ~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 139 (149)
T 1i3c_A 104 DDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFWL 139 (149)
T ss_dssp HHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999988777776655
No 34
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=93.56 E-value=0.022 Score=44.59 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=29.9
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
+.+.+++..||.+||.||++..+|...-.++.++..
T Consensus 93 ~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 128 (140)
T 2qr3_A 93 DLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK 128 (140)
T ss_dssp HHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence 356789999999999999999999988777776543
No 35
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=93.55 E-value=0.033 Score=43.53 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=28.5
Q ss_pred HHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHH
Q 012449 7 FDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 39 (463)
Q Consensus 7 v~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~ 39 (463)
..+++..||.+||.||+..++|...-..+.++.
T Consensus 90 ~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 90 KVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp HHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 458999999999999999999998877776653
No 36
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=93.41 E-value=0.018 Score=45.62 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=30.2
Q ss_pred HHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 6 LFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 6 vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
.+.+|+..||.+||.||+..++|...-+.+.++..
T Consensus 90 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 124 (140)
T 3n53_A 90 AIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
T ss_dssp CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHH
Confidence 34578999999999999999999999888876654
No 37
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=93.16 E-value=0.16 Score=39.39 Aligned_cols=49 Identities=27% Similarity=0.384 Sum_probs=41.1
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchhhhhh
Q 012449 223 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHR 276 (463)
Q Consensus 223 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~ 276 (463)
+-.||+|-++.|+++|.++|-.. ..|-..| +|-|..+|+.|-++|-..+
T Consensus 9 ~~~WT~eEd~~l~~~~~~~G~~W---~~Ia~~~--~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 9 SVKWTIEEKELFEQGLAKFGRRW---TKISKLI--GSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHTCSCH---HHHHHHH--SSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCH---HHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence 55899999999999999999744 6677765 7999999999999886544
No 38
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=93.16 E-value=0.037 Score=43.39 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=27.7
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 38 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr 38 (463)
+.+.+++..||.+||.||+..++|...-+.+.+.
T Consensus 94 ~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 94 EEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp HHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 4567999999999999999999998876555443
No 39
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=93.15 E-value=0.043 Score=43.36 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=29.6
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
+.+.+++..||.+||.||+..++|...-+.+.++..
T Consensus 88 ~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 88 DLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp HHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 346689999999999999999999988888776543
No 40
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=93.09 E-value=0.025 Score=43.55 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=28.1
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 38 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr 38 (463)
+.+.+++..||.|||.||+..++|...-..+.++
T Consensus 89 ~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 89 EDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp HHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 3566899999999999999999998776666554
No 41
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=93.00 E-value=0.02 Score=44.45 Aligned_cols=34 Identities=12% Similarity=0.291 Sum_probs=28.0
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 38 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr 38 (463)
+.+.+++..||.+||.||++..+|...-+.+.+.
T Consensus 92 ~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~ 125 (135)
T 3eqz_A 92 ETLALSCGLNVINTFTKPINTEVLTCFLTSLSNR 125 (135)
T ss_dssp HHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhh
Confidence 4456799999999999999999998886666543
No 42
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=92.97 E-value=0.056 Score=47.88 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=30.3
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 39 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~ 39 (463)
+.+.+|+..||.|||.||+..++|...-+.+.|+.
T Consensus 108 ~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 108 QDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp HHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 45668999999999999999999998878777764
No 43
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=92.96 E-value=0.041 Score=42.80 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=25.9
Q ss_pred HHHHHhhcchhhhhhcCCCHHHHHHHHHHHH
Q 012449 6 LFDNNFQLGAVEFLRKPLSEDKLRNLWQHVV 36 (463)
Q Consensus 6 vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~ 36 (463)
.+.++++.||.+||.||+..++|...=.++.
T Consensus 93 ~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (132)
T 3lte_A 93 KLQQAVTEGADDYLEKPFDNDALLDRIHDLV 123 (132)
T ss_dssp HHHHHHHHTCCEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHhhCCCCHHHHHHHHHHHc
Confidence 5668999999999999999999987644444
No 44
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=92.91 E-value=0.066 Score=43.19 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=30.8
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
+.+.+++..||.+||.||+..++|...-..+.++..
T Consensus 88 ~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 88 PMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp HHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999998888876543
No 45
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=92.78 E-value=0.028 Score=43.84 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=28.5
Q ss_pred HHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHH
Q 012449 6 LFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 38 (463)
Q Consensus 6 vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr 38 (463)
.+.+++..||.+||.||+..++|...-+.+.++
T Consensus 88 ~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 88 YGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp THHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 466899999999999999999999887776654
No 46
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=92.65 E-value=0.063 Score=45.44 Aligned_cols=34 Identities=9% Similarity=0.195 Sum_probs=28.4
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 38 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr 38 (463)
+.+.+|+..||.|||.||++..+|...-..+.++
T Consensus 92 ~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 125 (196)
T 1qo0_D 92 AVLSQIIELECHGVITQPLDAHRVLPVLVSARRI 125 (196)
T ss_dssp HHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHH
Confidence 4567899999999999999999998877666543
No 47
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=92.63 E-value=0.056 Score=43.42 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=28.7
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 38 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr 38 (463)
+.+.+++..||.+||.||+..++|...-+.+.++
T Consensus 91 ~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 91 ELIRAALEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp HHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567899999999999999999998886666543
No 48
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.59 E-value=0.18 Score=39.13 Aligned_cols=52 Identities=27% Similarity=0.328 Sum_probs=41.0
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCc---hHHHhhcCCCCCcHHHHHhhhchhhhhh
Q 012449 223 KVDWTPELHKKFVQAVEQLGVDQAIP---SRILELMKVEGLTRHNVASHLQKYRMHR 276 (463)
Q Consensus 223 Rl~WT~ELH~rFV~AV~qLG~dkAtP---K~ILelM~V~gLTr~~VkSHLQKYRl~~ 276 (463)
+-.||.|=+++|+++|.++|.+...+ ..|-+.| +|-|..+|+.|-|+|-..+
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 44799999999999999999543223 3466665 6899999999999987543
No 49
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=92.37 E-value=0.035 Score=46.95 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=29.6
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 39 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~ 39 (463)
+.+.+|+..||.|||.||+..++|...-+.+.++.
T Consensus 92 ~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~ 126 (184)
T 3rqi_A 92 ATAVQAVKDGADNYLAKPANVESILAALQTNASEV 126 (184)
T ss_dssp HHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHH
T ss_pred HHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999998877766554
No 50
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=92.13 E-value=0.064 Score=45.69 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=29.7
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 39 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~ 39 (463)
+.+.+++..||.|||.||+..++|...-+.+.++.
T Consensus 98 ~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 98 DLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp HHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 35568999999999999999999998888776553
No 51
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=92.08 E-value=0.071 Score=42.86 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=28.6
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 38 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr 38 (463)
+.+.+++..||.+||.||+..++|...-+.+.++
T Consensus 102 ~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 102 AIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp HHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 4567899999999999999999998876666554
No 52
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=92.06 E-value=0.096 Score=42.18 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=30.2
Q ss_pred HHHHHHhhcc-hhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLG-AVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 5 ~vv~Kcl~~G-A~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
+.+.+++..| |.+||.||+..++|...-+.+.++..
T Consensus 89 ~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 89 TTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp HHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 3466899999 89999999999999988888776543
No 53
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=91.80 E-value=0.074 Score=42.63 Aligned_cols=33 Identities=9% Similarity=0.420 Sum_probs=22.8
Q ss_pred HHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHH
Q 012449 7 FDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 39 (463)
Q Consensus 7 v~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~ 39 (463)
+.+++..||.+||.||+..++|...-+.+.++.
T Consensus 92 ~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 124 (141)
T 3cu5_A 92 LKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTV 124 (141)
T ss_dssp C------CCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999988777766554
No 54
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=91.49 E-value=0.088 Score=45.04 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=28.3
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 37 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~R 37 (463)
+.+.+|+..||.+||.||+...+|...-+.+.+
T Consensus 92 ~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (215)
T 1a04_A 92 EDVVTALKRGADGYLLKDMEPEDLLKALHQAAA 124 (215)
T ss_dssp HHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHc
Confidence 456789999999999999999999887666655
No 55
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=91.38 E-value=0.056 Score=43.53 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=27.9
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 37 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~R 37 (463)
+.+.+++..||.+||.||+..++|...-+.+.+
T Consensus 92 ~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 92 AFALKAFEAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp HHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred HHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 456789999999999999999999887666554
No 56
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=91.34 E-value=0.13 Score=41.33 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=30.2
Q ss_pred HHHHHHhhcc-hhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLG-AVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 5 ~vv~Kcl~~G-A~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
..+.+++..| |.+||.||+...+|...-..+.++..
T Consensus 92 ~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 92 QATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp HHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 3566899998 99999999999999998888776543
No 57
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=90.79 E-value=0.11 Score=44.51 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=30.2
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 39 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~ 39 (463)
+.+.+++..||.+||.||+..++|...-+.+.++.
T Consensus 87 ~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 121 (225)
T 1kgs_A 87 EYRVKGLNMGADDYLPKPFDLRELIARVRALIRRK 121 (225)
T ss_dssp HHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhc
Confidence 35668999999999999999999998888877664
No 58
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=90.65 E-value=0.13 Score=50.20 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=30.8
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
+.+.+|+..||.|||.||+..++|...-+++.++..
T Consensus 85 ~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 85 DTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp HHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 356699999999999999999999998888776643
No 59
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=90.39 E-value=0.15 Score=43.76 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=28.8
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 38 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr 38 (463)
+.+.+++..||.+||.||+..++|...-+.+.++
T Consensus 84 ~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 84 ESVLKGFEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp HHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 3566899999999999999999998887766654
No 60
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=90.28 E-value=0.094 Score=47.09 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=27.3
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 37 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~R 37 (463)
+.+.+|+..||.+||.||+..++|...-+.+.+
T Consensus 121 ~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 121 EEKVRLLGLGADDYLIKPFHPDELLARVKVQLR 153 (249)
T ss_dssp HHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 456799999999999999999999877555543
No 61
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=90.15 E-value=0.13 Score=44.30 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=28.2
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 38 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr 38 (463)
..+.+|+..||.+||.||+..++|...-+.+.++
T Consensus 88 ~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 88 IDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp HHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 3466899999999999999999998876666543
No 62
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=89.90 E-value=0.16 Score=43.05 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=28.7
Q ss_pred HHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHH
Q 012449 6 LFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 39 (463)
Q Consensus 6 vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~ 39 (463)
.+.+++..||.|||.||+...+|...-..+.++.
T Consensus 90 ~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (208)
T 1yio_A 90 MTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123 (208)
T ss_dssp CCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhh
Confidence 3458999999999999999999988777776653
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=89.39 E-value=0.37 Score=46.57 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=43.6
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchhhhh
Q 012449 220 KKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 275 (463)
Q Consensus 220 kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~ 275 (463)
.|..-+||+|-++.|++|+...|-+. ..|-++ |.+=|..+|++|-++||..
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGKDW---~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGRDF---QAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSSCH---HHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCcCH---HHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 35577999999999999999999665 677777 5689999999999999865
No 64
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=89.20 E-value=0.14 Score=44.68 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=29.8
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 39 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~ 39 (463)
+.+.+++..||.+||.||+..++|...-+.+.++.
T Consensus 88 ~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 122 (225)
T 3c3w_A 88 EAMLDAILAGASGYVVKDIKGMELARAVKDVGAGR 122 (225)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCC
Confidence 45679999999999999999999998877776653
No 65
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=89.19 E-value=0.21 Score=47.64 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=28.2
Q ss_pred HHHHHHhhcchhhhhhcCC-CHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPL-SEDKLRNLWQHVVHKA 39 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPl-r~neLkniWQHV~Rr~ 39 (463)
+.+.+|++.||.|||.||+ ..++|...-+.+.++.
T Consensus 90 ~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 90 SDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp HHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 4567999999999999999 5788887767766543
No 66
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=88.92 E-value=0.57 Score=38.85 Aligned_cols=55 Identities=22% Similarity=0.371 Sum_probs=38.6
Q ss_pred CCcccCCHHHHHHHHHHHHHhC-CCCCCchHHHh------------------hcCCCCCcHHHHHhhhchhhhhhcc
Q 012449 221 KMKVDWTPELHKKFVQAVEQLG-VDQAIPSRILE------------------LMKVEGLTRHNVASHLQKYRMHRRH 278 (463)
Q Consensus 221 K~Rl~WT~ELH~rFV~AV~qLG-~dkAtPK~ILe------------------lM~V~gLTr~~VkSHLQKYRl~~k~ 278 (463)
+..-+|.++|-+.|++|+..+- .... |.+|. .-| ..-|+.+|.||||.-|....+
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHHHTT
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHHHhh
Confidence 4456899999999999999874 2222 22221 111 457999999999998876654
No 67
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=88.51 E-value=0.15 Score=43.85 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHHH
Q 012449 7 FDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 40 (463)
Q Consensus 7 v~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~~ 40 (463)
+.+++..||.|||.||+..++|...-+.+.++..
T Consensus 94 ~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 94 RVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp CCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 3478999999999999999999998888887653
No 68
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=88.38 E-value=0.23 Score=48.48 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=29.6
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 39 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~ 39 (463)
+.+.+++..||.|||.||+..++|...-.++.++.
T Consensus 85 ~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 85 KTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp HHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 34569999999999999999999998888776543
No 69
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=88.30 E-value=0.82 Score=34.33 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=38.9
Q ss_pred cccCCHHHHHHHHHHHHHhCC-CCCCchHHHhhcCCCCCcHHHHHhhhchhhh
Q 012449 223 KVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKYRM 274 (463)
Q Consensus 223 Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl 274 (463)
|-.||+|-.+++++||+++|. .. +.|-+.| ++-|..+++.|-++|-+
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~W---~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGNW---QDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCH---HHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCcH---HHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 457999999999999999994 44 6677777 68999999999887743
No 70
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=88.25 E-value=0.32 Score=38.41 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=26.2
Q ss_pred HHHHHhhc-chhhhhhcCCCHHHHHHHHHHHHHH
Q 012449 6 LFDNNFQL-GAVEFLRKPLSEDKLRNLWQHVVHK 38 (463)
Q Consensus 6 vv~Kcl~~-GA~DyLiKPlr~neLkniWQHV~Rr 38 (463)
.+.+++.. ||.|||.||+...+|...=..+.++
T Consensus 86 ~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 119 (139)
T 2jk1_A 86 SMMAAINDAGIHQFLTKPWHPEQLLSSARNAARM 119 (139)
T ss_dssp HHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHH
Confidence 45678876 5999999999999998876666554
No 71
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=88.23 E-value=0.28 Score=45.31 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=27.3
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 37 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~R 37 (463)
+.+.+|+..||.|||.||+...+|......+.+
T Consensus 106 ~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 106 TVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp HHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 356689999999999999999999877666543
No 72
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=88.16 E-value=0.49 Score=49.58 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=43.6
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchhhhhh
Q 012449 221 KMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHR 276 (463)
Q Consensus 221 K~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~ 276 (463)
|..-+||+|-|..|++||.+.|-+. +.|-+.++ .=|..+|++|.++||.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGkdw---~~IA~~Vg--TKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGRDF---QAISDVIG--NKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTCH---HHHHHHHS--SCCHHHHHHHHHHTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCH---HHHHHHhC--CCCHHHHHHHHHHHHHHh
Confidence 5578999999999999999999665 77888865 459999999999998754
No 73
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=88.14 E-value=0.27 Score=47.46 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=28.5
Q ss_pred HHHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 38 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr 38 (463)
+.+.+|+..||.|||.||+...+|...-+.+.++
T Consensus 88 ~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~ 121 (459)
T 1w25_A 88 GDRIQGLESGASDFLTKPIDDVMLFARVRSLTRF 121 (459)
T ss_dssp HHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 3456999999999999999999998876766654
No 74
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=88.03 E-value=0.14 Score=44.08 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=26.6
Q ss_pred HHHHHHhhcchhhhhhcCC-CHHHHHHHHHHHH
Q 012449 5 QLFDNNFQLGAVEFLRKPL-SEDKLRNLWQHVV 36 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPl-r~neLkniWQHV~ 36 (463)
+.+.+++..||.+||.||+ ..++|...-+.+.
T Consensus 81 ~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~ 113 (223)
T 2hqr_A 81 EEEVHAFEQGADDYIAKPYRSIKALVARIEARL 113 (223)
T ss_dssp HHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHh
Confidence 4567899999999999999 9999987655544
No 75
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=87.92 E-value=0.14 Score=44.47 Aligned_cols=32 Identities=6% Similarity=-0.258 Sum_probs=26.4
Q ss_pred HHHHHhhcchhhhhhcCCCHHHHHHHHHHHHH
Q 012449 6 LFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 37 (463)
Q Consensus 6 vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~R 37 (463)
.+.+++..||.|||.||+...+|...-+.+.+
T Consensus 97 ~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 128 (225)
T 3klo_A 97 HKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQ 128 (225)
T ss_dssp HHHHTTSTTEEEEEETTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCEEEecCCCHHHHHHHHHHHHC
Confidence 45689999999999999999999877555544
No 76
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=87.82 E-value=0.13 Score=40.78 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=23.8
Q ss_pred HHhhcchhhhhhcCCCHHHHHHHHHHHHHH
Q 012449 9 NNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 38 (463)
Q Consensus 9 Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr 38 (463)
.++..||.+||.||+...+|...-..+.++
T Consensus 94 ~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 94 NEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp HHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred HHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 455566789999999999998877776644
No 77
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=86.14 E-value=0.32 Score=46.98 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=29.5
Q ss_pred HHHHHhhcchhhhhhcCCCHHHHHHHHHHHHHHH
Q 012449 6 LFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 39 (463)
Q Consensus 6 vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr~ 39 (463)
.+.+|+..||.|||.||+..++|...-+.+.++.
T Consensus 96 ~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 96 SMIECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp HHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 3568999999999999999999999888777654
No 78
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=84.82 E-value=0.21 Score=43.75 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=25.0
Q ss_pred HHHHHhhcchhhhhhcCCCHHHHHHHHHHH
Q 012449 6 LFDNNFQLGAVEFLRKPLSEDKLRNLWQHV 35 (463)
Q Consensus 6 vv~Kcl~~GA~DyLiKPlr~neLkniWQHV 35 (463)
.+.+++..||.+||.||+..++|...-+.+
T Consensus 90 ~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~ 119 (238)
T 2gwr_A 90 DVVLGLESGADDYIMKPFKPKELVARVRAR 119 (238)
T ss_dssp CHHHHHHTTCCEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 356899999999999999999998764444
No 79
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=84.28 E-value=3.2 Score=33.08 Aligned_cols=49 Identities=12% Similarity=0.126 Sum_probs=37.8
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCchHHHhhc-CCCCCcHHHHHhhhchhh
Q 012449 223 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELM-KVEGLTRHNVASHLQKYR 273 (463)
Q Consensus 223 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM-~V~gLTr~~VkSHLQKYR 273 (463)
+-.||.|-.++|++||.++|.+ +|.+--.+= -|+|-|-.+|+.|-+.+.
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~--~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRG--SSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSS--SHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3469999999999999999953 676543322 257999999999977654
No 80
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=83.92 E-value=2.2 Score=32.62 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=44.6
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCC-CCCCchHHHhhcCCCCCcHHHHHhhhchhhhhhcccCC
Q 012449 218 NRKKMKVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILP 281 (463)
Q Consensus 218 ~~kK~Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~l~ 281 (463)
..++.|-.||+|--+..+++|+++|. .. +.|.+.|+..|-|-.+++-+ |+.+++..+.
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W---~~Ia~~~~~~~Rt~~qcr~R---w~~~l~p~i~ 63 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNW---SKILLHYKFNNRTSVMLKDR---WRTMKKLKLI 63 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCH---HHHHHHSCCSSCCHHHHHHH---HHHHHHTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcH---HHHHHHcCcCCCCHHHHHHH---HHHHcCCCCC
Confidence 45667889999999999999999994 44 77888887558888888754 5555554443
No 81
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=83.38 E-value=1.6 Score=32.70 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=38.3
Q ss_pred ccCCHHHHHHHHHHHHHhC-CCCCCchHHHhhcCCCCCcHHHHHhhhchhhh
Q 012449 224 VDWTPELHKKFVQAVEQLG-VDQAIPSRILELMKVEGLTRHNVASHLQKYRM 274 (463)
Q Consensus 224 l~WT~ELH~rFV~AV~qLG-~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl 274 (463)
-.||+|-.+++++||++.| ... +.|-+.|+. +-|..+++.|-++|-+
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~W---~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGNW---ADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCH---HHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCH---HHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 3699999999999999999 444 667777743 7899999999887754
No 82
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=83.35 E-value=0.19 Score=41.51 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.2
Q ss_pred HHHHHhhcchhhhhhcCCCHHHHH
Q 012449 6 LFDNNFQLGAVEFLRKPLSEDKLR 29 (463)
Q Consensus 6 vv~Kcl~~GA~DyLiKPlr~neLk 29 (463)
.+.+++..||.|||.||+...+|.
T Consensus 114 ~~~~~~~~ga~~~l~KP~~~~~l~ 137 (164)
T 3t8y_A 114 ITIEALRNGAVDFITKPHGSISLT 137 (164)
T ss_dssp HHHHHHHTTCCEEEECSSSSSCGG
T ss_pred HHHHHHHcCcCEEEeCCCCHHHHH
Confidence 566999999999999999987774
No 83
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.34 E-value=4.6 Score=30.50 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=37.5
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchhhhhhc
Q 012449 219 RKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRR 277 (463)
Q Consensus 219 ~kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k 277 (463)
.++..-.||+|=|+.|++|+.+.|-+- ..|-.+ |++-|..+|.. .|-+.++
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk~w---~~Ia~~--l~~rt~~~~v~---~Yy~~Kk 58 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPKNF---GLIASY--LERKSVPDCVL---YYYLTKK 58 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTTCH---HHHHHH--CTTSCHHHHHH---HHHHHTC
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCH---HHHHHH--cCCCCHHHHHH---HHHHhcC
Confidence 456678999999999999999999432 556655 46888888764 3555443
No 84
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=78.23 E-value=0.6 Score=36.85 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=20.6
Q ss_pred hcchhhhhhcCCCHHHHHHHHHHHH
Q 012449 12 QLGAVEFLRKPLSEDKLRNLWQHVV 36 (463)
Q Consensus 12 ~~GA~DyLiKPlr~neLkniWQHV~ 36 (463)
..||.+||.||+..++|...=..+.
T Consensus 104 ~~g~~~~l~KP~~~~~L~~~i~~~~ 128 (140)
T 3c97_A 104 GAELDEYVSKPLNPNQLRDVVLTCH 128 (140)
T ss_dssp CSSCSEEEESSCCHHHHHHHHHHHH
T ss_pred hCChhheEeCCCCHHHHHHHHHHHh
Confidence 5789999999999999987755444
No 85
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=78.08 E-value=4.6 Score=29.85 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=37.1
Q ss_pred CCcccCCHHHHHHHHHHHHHhCC-CCCCchHHHhhcCCCCCcHHHHHhhhchh
Q 012449 221 KMKVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKY 272 (463)
Q Consensus 221 K~Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQKY 272 (463)
..|-.||+|-.++++++|.++|. .. ..|-+.| +|-|..+++.|-++|
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W---~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDW---KFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCH---HHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHc--cCCCHHHHHHHHHHH
Confidence 44668999999999999999994 44 6677775 688888888765544
No 86
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=76.81 E-value=3.8 Score=29.41 Aligned_cols=45 Identities=31% Similarity=0.355 Sum_probs=36.2
Q ss_pred cccCCHHHHHHHHHHHHHhCC-CCCCchHHHhhcCCCCCcHHHHHhhhchh
Q 012449 223 KVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKY 272 (463)
Q Consensus 223 Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQKY 272 (463)
|-.||+|-.++++++|.++|. .- +.|-+.| +|-|..+++.|-++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W---~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDW---KVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCH---HHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999995 43 6677776 588999988776554
No 87
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=76.33 E-value=4.6 Score=31.99 Aligned_cols=44 Identities=18% Similarity=0.402 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCchH---HHhhcCCCCCcHHHHHhhhchhh
Q 012449 225 DWTPELHKKFVQAVEQLGVDQAIPSR---ILELMKVEGLTRHNVASHLQKYR 273 (463)
Q Consensus 225 ~WT~ELH~rFV~AV~qLG~dkAtPK~---ILelM~V~gLTr~~VkSHLQKYR 273 (463)
.||.|=+++|.+|+.+++.+ ||.+ |-+.| |-|-++|+.|-+++.
T Consensus 10 ~WT~eE~k~fe~al~~~p~~--t~~RW~~IA~~l---gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 10 EWTEEDLSQLTRSMVKFPGG--TPGRWEKIAHEL---GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHH---TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCC--CCcHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 69999999999999999843 4554 66676 689999999877654
No 88
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=76.29 E-value=4.3 Score=31.21 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=39.1
Q ss_pred CcccCCHHHHHHHHHHHHHhCC-CCCCchHHHhhcCCCCCcHHHHHhhhchhhhhhc
Q 012449 222 MKVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKYRMHRR 277 (463)
Q Consensus 222 ~Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k 277 (463)
.|-.||+|--++.+++|++.|. .. +.|.+.+.+.|-|-.+++- +||..++
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W---~~Ia~~~~~~~Rt~~qcr~---Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNW---AAISKNYPFVNRTAVMIKD---RWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCH---HHHHHHSCCSSCCHHHHHH---HHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCch---HHHHhhcCCCCCCHHHHHH---HHHHHhc
Confidence 3557999999999999999994 44 6788888878888888764 4555443
No 89
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.97 E-value=6.3 Score=30.10 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=36.9
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchhhhhhcc
Q 012449 219 RKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRH 278 (463)
Q Consensus 219 ~kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~ 278 (463)
.+..+-.||+|=|+.|.+|+.+.|-+- ..|-+.| |+.-|..+|. +-|-+.++.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf---~~I~~~~-v~~Kt~~~~v---~fYY~wKkt 57 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNF---FRIRKEL-LPNKETGELI---TFYYYWKKT 57 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCH---HHHHHHS-CTTSCHHHHH---HHHHHHHCS
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccH---HHHHHHH-cCCCcHHHHH---HHHhcccCC
Confidence 344467999999999999999999542 4555533 5677777764 455555443
No 90
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=72.08 E-value=1.2 Score=40.45 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=18.1
Q ss_pred HHHHHHhhcchhhhhhcCCCHH
Q 012449 5 QLFDNNFQLGAVEFLRKPLSED 26 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr~n 26 (463)
+...+|++.||.|||.||++..
T Consensus 87 ~~~~~a~~~Ga~dyl~Kp~~~~ 108 (259)
T 3luf_A 87 DKREAWLEAGVLDYVMKDSRHS 108 (259)
T ss_dssp HHHHHHHHTTCCEEEECSSHHH
T ss_pred HHHHHHHHCCCcEEEeCCchhH
Confidence 3456899999999999998654
No 91
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=71.40 E-value=6.4 Score=28.30 Aligned_cols=45 Identities=20% Similarity=0.329 Sum_probs=35.4
Q ss_pred cccCCHHHHHHHHHHHHHhCC-CCCCchHHHhhcCCCCCcHHHHHhhhchh
Q 012449 223 KVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKY 272 (463)
Q Consensus 223 Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQKY 272 (463)
|-.||+|-.++++++|.++|. .. ..|-+.| +|-|..+++.|-+.|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W---~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRW---SVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCH---HHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChH---HHHHHHc--CCCCHHHHHHHHHHH
Confidence 347999999999999999994 23 5666665 688988888776654
No 92
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=70.71 E-value=1.5 Score=33.72 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=22.7
Q ss_pred HHHHhhcchhhhhhcCCCHHHHHHHHHHHHHH
Q 012449 7 FDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 38 (463)
Q Consensus 7 v~Kcl~~GA~DyLiKPlr~neLkniWQHV~Rr 38 (463)
+.+++..| +||.||+...+|...-+++.+.
T Consensus 94 ~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 94 ASNGVPDS--IILEKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp HHHSCTTC--EEEESSCCHHHHHHHHHHHHHT
T ss_pred HHhhcCCc--ceEeCCCCHHHHHHHHHHHHhc
Confidence 44666666 7999999999998876655543
No 93
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=69.71 E-value=2.3 Score=41.21 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=17.9
Q ss_pred HHHHHHhhcchhhhhhcCCC
Q 012449 5 QLFDNNFQLGAVEFLRKPLS 24 (463)
Q Consensus 5 ~vv~Kcl~~GA~DyLiKPlr 24 (463)
+.+.+++..||.|||.||+.
T Consensus 91 ~~~~~al~~Ga~d~l~KP~~ 110 (349)
T 1a2o_A 91 EVTLRALELGAIDFVTKPQL 110 (349)
T ss_dssp HHHHHHHHHTCCEEEECSSS
T ss_pred HHHHHHHhCCceEEEECCCC
Confidence 34779999999999999997
No 94
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=68.95 E-value=11 Score=32.99 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=42.9
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHHhCC-CCCCchHHHhhc--CCCCCcHHHHHhhhchhhhhhc
Q 012449 217 ANRKKMKVDWTPELHKKFVQAVEQLGV-DQAIPSRILELM--KVEGLTRHNVASHLQKYRMHRR 277 (463)
Q Consensus 217 ~~~kK~Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM--~V~gLTr~~VkSHLQKYRl~~k 277 (463)
...+|.|-.||.|--+..+++|+++|. .. +.|++.+ ..++-|.-+++ .|||..++
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W---~~I~~~~~~~~~~RT~vdlK---dRWrnllk 82 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRW---RDVKFRAFENVHHRTYVDLK---DKWKTLVH 82 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCH---HHHHHHHHSSSCCCCHHHHH---HHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCCh---HHHHHHhccccCCCCHHHHH---HHHHHHHh
Confidence 356677889999999999999999995 55 5677754 24788999988 46776664
No 95
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.34 E-value=11 Score=28.70 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=36.5
Q ss_pred CCcccCCHHHHHHHHHHHHHhC-CCCCCchHHHhhcCCCCCcHHHHHhhhchh
Q 012449 221 KMKVDWTPELHKKFVQAVEQLG-VDQAIPSRILELMKVEGLTRHNVASHLQKY 272 (463)
Q Consensus 221 K~Rl~WT~ELH~rFV~AV~qLG-~dkAtPK~ILelM~V~gLTr~~VkSHLQKY 272 (463)
..|=.||+|-.++++++|.++| ... +.|-..|+ |-|..+++-|-..|
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W---~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQW---SRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCH---HHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCH---HHHHHHhc--CCCHHHHHHHHHHH
Confidence 3455899999999999999999 343 67877775 88888887655443
No 96
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=65.99 E-value=1.2 Score=38.00 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=21.8
Q ss_pred hHHHHHHhhcchhhhhhcC--CCHHHHHHH
Q 012449 4 NQLFDNNFQLGAVEFLRKP--LSEDKLRNL 31 (463)
Q Consensus 4 ~~vv~Kcl~~GA~DyLiKP--lr~neLkni 31 (463)
.+.+.++++.||.+||+|| +...+|...
T Consensus 65 ~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~ 94 (237)
T 3cwo_X 65 QAMVIEAIKAGAKDFIVNTAAVENPSLITQ 94 (237)
T ss_dssp HHHHHHHHHTTCCEEEESHHHHHCTHHHHH
T ss_pred HHHHHHHHHCCHHheEeCCcccChHHHHHH
Confidence 3456799999999999999 666666543
No 97
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=65.65 E-value=6 Score=32.83 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=37.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCchH---HHhhcCCCCCcHHHHHhhhchhhhh
Q 012449 225 DWTPELHKKFVQAVEQLGVDQAIPSR---ILELMKVEGLTRHNVASHLQKYRMH 275 (463)
Q Consensus 225 ~WT~ELH~rFV~AV~qLG~dkAtPK~---ILelM~V~gLTr~~VkSHLQKYRl~ 275 (463)
.||.|=.+.|++|+.++|.+ +|.+ |-+.| +|-|-.+|+.|-+++...
T Consensus 10 ~WT~eEd~~L~~al~~~~~~--~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYDKD--TPDRWANVARAV--EGRTPEEVKKHYEILVED 59 (93)
T ss_dssp SCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHS--TTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 69999999999999999854 4543 55554 699999999998877543
No 98
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=62.33 E-value=14 Score=26.68 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=35.7
Q ss_pred cccCCHHHHHHHHHHHHHhCC-CCCCchHHHhhcCCCCCcHHHHHhhhc
Q 012449 223 KVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQ 270 (463)
Q Consensus 223 Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQ 270 (463)
|-.||+|-.+..+++|+++|. .. +.|.+.|+..|-|-.+++-+-.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W---~~Ia~~~~~~~Rt~~qcr~Rw~ 47 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNW---SKILLHYKFNNRTSVMLKDRWR 47 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCH---HHHHHHSCCSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCH---HHHHHHcCCCCCCHHHHHHHHH
Confidence 447999999999999999994 44 7788888655778888876433
No 99
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=61.44 E-value=12 Score=31.90 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=42.6
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCC-CCCCchHHHhhcC--CCCCcHHHHHhhhchhhhhhc
Q 012449 218 NRKKMKVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMK--VEGLTRHNVASHLQKYRMHRR 277 (463)
Q Consensus 218 ~~kK~Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~--V~gLTr~~VkSHLQKYRl~~k 277 (463)
..++.|-.||+|--+..+++|+++|. .. +.|++.+. .+|-|.-++|. |||..++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W---~~I~~~~~~~f~~RT~v~lKd---rWrnllk 64 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRW---RDVKLCAFEDADHRTYVDLKD---KWKTLVH 64 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSH---HHHHSSSSSSTTCCCHHHHHH---HHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCh---HHHHHHhccccCCCCHHHHHH---HHHHHHh
Confidence 46778889999999999999999995 55 67888663 37889988885 5666554
No 100
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.75 E-value=13 Score=27.93 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=36.9
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchhhh
Q 012449 223 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRM 274 (463)
Q Consensus 223 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl 274 (463)
+-.||.|=.+++++++.++|... ..|-++| |-|-.+|+.|-+.|-.
T Consensus 9 k~~WT~eED~~L~~~~~~~g~~W---~~Ia~~~---gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPTQW---RTIAPII---GRTAAQCLEHYEFLLD 54 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTCH---HHHHHHH---SSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCH---HHHhccc---CcCHHHHHHHHHHHhC
Confidence 45799999999999999999644 6677755 5899999988776643
No 101
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=59.26 E-value=2.7 Score=34.10 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=37.3
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchhhh
Q 012449 223 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRM 274 (463)
Q Consensus 223 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl 274 (463)
+=.||+|-.+.|+++|.++|-+. ..|-.. ++|-|..+|+.|-+.|..
T Consensus 16 ~~~WT~eEd~~l~~~~~~~G~~W---~~IA~~--l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 16 FQGWTEEEMGTAKKGLLEHGRNW---SAIARM--VGSKTVSQCKNFYFNYKK 62 (89)
Confidence 34799999999999999999654 445555 468999999999876654
No 102
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=53.25 E-value=16 Score=29.89 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=37.7
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchhhh
Q 012449 223 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRM 274 (463)
Q Consensus 223 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl 274 (463)
+-.||+|-...++++|.++|... ..|-+.| +|-|..+|+.|-..+..
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W---~~Ia~~l--~gRt~~~~k~rw~~l~r 99 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKW---NKISKFL--KNRSDNNIRNRWMMIAR 99 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCH---HHHHHHH--SSSCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcCH---HHHHHHC--CCCCHHHHHHHHHHHHh
Confidence 44899999999999999999643 5677765 79999999988665443
No 103
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=52.40 E-value=13 Score=29.85 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCchHHHhhc-CCCCCcHHHHHhhhchh
Q 012449 225 DWTPELHKKFVQAVEQLGVDQAIPSRILELM-KVEGLTRHNVASHLQKY 272 (463)
Q Consensus 225 ~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM-~V~gLTr~~VkSHLQKY 272 (463)
.||.+-.++|.+|+..++.+ +|.+-..+- -|+|=|.++|..|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~--tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKH--KPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSS--SSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCCCC--CccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 59999999999999998743 677543322 26789999999775544
No 104
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=51.80 E-value=30 Score=26.90 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=36.3
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchhhhhhcc
Q 012449 220 KKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRH 278 (463)
Q Consensus 220 kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~ 278 (463)
++..-.||+|=++.|.+|+...|-+- ..|-..| |++-|..+|..+ |-+.++.
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGKdf---~~I~~~~-v~~Kt~~~~v~f---YY~wKkt 56 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGKDF---NDIRQDF-LPWKSLTSIIEY---YYMWKTT 56 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCSCH---HHHHHTT-CSSSCHHHHHHH---HHHHHTC
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCccH---HHHHHHH-cCCCCHHHHHHH---HHhhcCC
Confidence 35567899999999999999999542 4555523 567777776644 4444443
No 105
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=50.81 E-value=18 Score=29.12 Aligned_cols=43 Identities=30% Similarity=0.472 Sum_probs=35.0
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhc
Q 012449 223 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQ 270 (463)
Q Consensus 223 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQ 270 (463)
+-.||+|-...++++|.++|..- ..|-+. ++|-|..+|+.|-.
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~~W---~~Ia~~--l~gRt~~~~k~rw~ 98 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGNRW---AEIAKL--LPGRTDNAIKNHWN 98 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSCH---HHHHTT--CTTCCHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCH---HHHHHH--cCCCCHHHHHHHHH
Confidence 45899999999999999999543 466665 47999999998754
No 106
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=49.87 E-value=10 Score=36.44 Aligned_cols=32 Identities=13% Similarity=0.349 Sum_probs=25.5
Q ss_pred HHHHHhhcchhhhhhcCCCHHHHHHHHHHHHH
Q 012449 6 LFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 37 (463)
Q Consensus 6 vv~Kcl~~GA~DyLiKPlr~neLkniWQHV~R 37 (463)
.+.+|+..||.||+.||+...++...-..+.+
T Consensus 238 ~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~ 269 (459)
T 1w25_A 238 RMVKALEIGVNDILSRPIDPQELSARVKTQIQ 269 (459)
T ss_dssp HHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccccCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999988766554443
No 107
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=45.53 E-value=31 Score=28.93 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=36.2
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchh
Q 012449 220 KKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 272 (463)
Q Consensus 220 kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKY 272 (463)
+..|-.||+|--++++++|++.|.+. +.|-+.| +|-|..++..+-..|
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~~W---~~Ia~~~--~~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGSDW---KMIAATF--PNRNARQCRDRWKNY 55 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTTCH---HHHHHTC--TTCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCH---HHHHHHc--CCCCHHHHHHHHhhh
Confidence 34466899999999999999999643 6777766 477888777654443
No 108
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=44.55 E-value=7.5 Score=31.78 Aligned_cols=45 Identities=22% Similarity=0.300 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCchHHHhhc-CCCCCcHHHHHhhhch
Q 012449 225 DWTPELHKKFVQAVEQLGVDQAIPSRILELM-KVEGLTRHNVASHLQK 271 (463)
Q Consensus 225 ~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM-~V~gLTr~~VkSHLQK 271 (463)
.||.+-.+.|..|+..+. +-||.+--.+- -|+|-|.++|+.|-|-
T Consensus 22 ~WT~eE~K~FE~ALa~yp--~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 22 PWKFSENIAFEIALSFTN--KDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp CCCTTHHHHHHHHTSSSC--SSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CCCHHHHHHHHHHHHHCC--CCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 599999999999998875 44566543322 1579999999999773
No 109
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=43.68 E-value=24 Score=29.51 Aligned_cols=43 Identities=33% Similarity=0.482 Sum_probs=35.0
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhc
Q 012449 223 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQ 270 (463)
Q Consensus 223 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQ 270 (463)
+-.||+|-.+.++++|.++|... ..|-+.| +|-|..+|+.|-.
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~~W---~~Ia~~l--~gRt~~~~k~r~~ 121 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGNRW---AEIAKLL--PGRTDNAVKNHWN 121 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCH---HHHGGGS--TTCCHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHCcCH---HHHHHHC--CCCCHHHHHHHHH
Confidence 45799999999999999999543 4566665 7999999998754
No 110
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=39.87 E-value=43 Score=26.59 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=36.3
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhh
Q 012449 220 KKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHL 269 (463)
Q Consensus 220 kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHL 269 (463)
.-.|-.||+|--+.+++++.++|-.. +.|-+.| |-|-.+|+.+-
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G~kW---~~IA~~l---gRt~~q~knRw 63 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHGNDW---ATIGAAL---GRSASSVKDRC 63 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHSSCH---HHHHHHH---TSCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCH---HHHHHHh---CCCHHHHHHHH
Confidence 33456899999999999999999654 7788888 88999998764
No 111
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=38.72 E-value=41 Score=26.97 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=35.0
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchh
Q 012449 223 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 272 (463)
Q Consensus 223 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKY 272 (463)
+-.||+|-.++++++|+..|... =+.|-+.| +|-|..+++.|-++|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~--W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKR--WSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTC--HHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCc--HHHHhhhh--cCCCHHHHHHHHHhc
Confidence 34799999999999999999521 25677776 688999988665443
No 112
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=38.03 E-value=12 Score=40.15 Aligned_cols=30 Identities=7% Similarity=-0.117 Sum_probs=24.2
Q ss_pred HHhhcchhhhhhcCCCHHH--HHHHHHHHHHHH
Q 012449 9 NNFQLGAVEFLRKPLSEDK--LRNLWQHVVHKA 39 (463)
Q Consensus 9 Kcl~~GA~DyLiKPlr~ne--LkniWQHV~Rr~ 39 (463)
.++..||.|||.||+...| +.+|=.. .||.
T Consensus 103 ~~l~~gaddyi~kpf~~~efl~~ri~a~-~rr~ 134 (755)
T 2vyc_A 103 RDLLELVDEFAWILEDTADFIAGRAVAA-MTRY 134 (755)
T ss_dssp HHHHHHCSEEEETTTSCHHHHHHHHHHH-HHHH
T ss_pred HhHhhcCCceEeCCCCCHHHHHHHHHHH-HHHh
Confidence 7899999999999999999 5677444 4554
No 113
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=37.19 E-value=41 Score=28.20 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=34.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhch
Q 012449 224 VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQK 271 (463)
Q Consensus 224 l~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQK 271 (463)
-.||+|-.++++++|.++|... ..|-+.| +|-|..+|+.|-..
T Consensus 63 ~~WT~eEd~~L~~~v~~~G~~W---~~Ia~~l--~gRt~~~~k~rw~~ 105 (126)
T 3osg_A 63 TPWTAEEDALLVQKIQEYGRQW---AIIAKFF--PGRTDIHIKNRWVT 105 (126)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCH---HHHHTTS--TTCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCcCH---HHHHHHc--CCCCHHHHHHHHHH
Confidence 3799999999999999999543 5677654 79999999987543
No 114
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=37.12 E-value=19 Score=33.10 Aligned_cols=42 Identities=21% Similarity=0.459 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhC-CCCCCCCC--------------CCCCChhHHHHHHHHcCCCCC
Q 012449 412 EVIDKVVKEAISK-PWLPLPLG--------------LKPPSADSVLAELSRQGISTI 453 (463)
Q Consensus 412 E~iDaai~dvl~k-PWlPLPLG--------------LKpPs~dsVm~EL~rQGi~~i 453 (463)
+.|++....+=.+ |..+.=++ +..|+++.+|.+|.++|+..|
T Consensus 26 ~~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P~i~~al~~l~~~G~~~i 82 (269)
T 2xvy_A 26 PALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEEGFTHV 82 (269)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCCCHHHHHHHHHHCCCCEE
Confidence 4555544433322 66666666 889999999999999999864
No 115
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=36.63 E-value=50 Score=28.45 Aligned_cols=43 Identities=30% Similarity=0.472 Sum_probs=35.6
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhc
Q 012449 223 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQ 270 (463)
Q Consensus 223 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQ 270 (463)
+-.||+|-.+.+++++.++|..- ..|-+. ++|-|..+|+.|-.
T Consensus 110 ~~~WT~eEd~~L~~~~~~~g~~W---~~Ia~~--l~gRt~~~~knr~~ 152 (159)
T 1h89_C 110 KTSWTEEEDRIIYQAHKRLGNRW---AEIAKL--LPGRTDNAIKNHWN 152 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCH---HHHHTT--STTCCHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHHCCCH---HHHHHH--CCCCCHHHHHHHHH
Confidence 56899999999999999999543 567665 47999999998754
No 116
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=35.86 E-value=54 Score=28.50 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=42.7
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCC-CCCCchHHHhhcC--CCCCcHHHHHhhhchhhhhhc
Q 012449 218 NRKKMKVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMK--VEGLTRHNVASHLQKYRMHRR 277 (463)
Q Consensus 218 ~~kK~Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~--V~gLTr~~VkSHLQKYRl~~k 277 (463)
..++.|-.||+|--+..+++|+++|. .. +.|+..+. .+|-|--+++. |||..++
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W---~~Ia~~~~~~f~~RT~v~lKd---RWrnllk 68 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRW---RDVKMRAFDNADHRTYVDLKD---KWKTLVH 68 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCH---HHHHHHHCSCCSSCCSHHHHH---HHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCH---HHHHHHhccccCCCCHHHHHH---HHHHHHh
Confidence 45677889999999999999999994 55 57888764 37888888885 5666554
No 117
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=33.47 E-value=55 Score=26.60 Aligned_cols=40 Identities=30% Similarity=0.301 Sum_probs=31.7
Q ss_pred ccCCHHHHHHHHHHHHHhCC-CCCCchHHHhhcCCCCCcHHHHHhh
Q 012449 224 VDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASH 268 (463)
Q Consensus 224 l~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSH 268 (463)
-.||+|--++++++|+..|. +. ..|-+.|+ |-|..++..+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W---~~Ia~~~~--~Rt~~qcr~R 42 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDW---IRISQLMI--TRNPRQCRER 42 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCH---HHHHHHTT--TSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCH---HHHhhhcC--CCCHHHHHHH
Confidence 47999999999999999994 33 56777774 7788877654
No 118
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=33.35 E-value=1.3e+02 Score=23.73 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=40.8
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcC-CCCCcHHHHHhhhchhhhhhccc
Q 012449 221 KMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMK-VEGLTRHNVASHLQKYRMHRRHI 279 (463)
Q Consensus 221 K~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~-V~gLTr~~VkSHLQKYRl~~k~~ 279 (463)
+.|-.||+|--...++.|+++|... +.|+.--. .++-|.-+||. |||...++.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W---~~I~~~y~f~~~RT~VdLKd---k~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHW---NSILWSFPFQKGRRAVDLAH---KYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCH---HHHHHHSCCCTTCCHHHHHH---HHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhH---HHHHHhCCCccCcccchHHH---HHHHHHhcc
Confidence 3567899999999999999999644 78886333 47888888884 888766653
No 119
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=32.27 E-value=39 Score=28.42 Aligned_cols=43 Identities=26% Similarity=0.419 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchh
Q 012449 225 DWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 272 (463)
Q Consensus 225 ~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKY 272 (463)
.||+|-...++++|.++|... ..|-+.| +|-|..+|+.|-..|
T Consensus 56 ~Wt~eEd~~L~~~~~~~G~~W---~~Ia~~l--~gRt~~~~k~rw~~~ 98 (131)
T 3zqc_A 56 AWTPEEDETIFRNYLKLGSKW---SVIAKLI--PGRTDNAIKNRWNSS 98 (131)
T ss_dssp CCCHHHHHHHHHHHHHSCSCH---HHHTTTS--TTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHCcCH---HHHHHHc--CCCCHHHHHHHHHHH
Confidence 699999999999999999543 5566654 699999999875433
No 120
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=30.70 E-value=32 Score=28.15 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCChhHHHHHHHHcCCCCC
Q 012449 412 EVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTI 453 (463)
Q Consensus 412 E~iDaai~dvl~kPWlPLPLGLKpPs~dsVm~EL~rQGi~~i 453 (463)
+.+.+.+++.+ .+-..-=+.+-.|+++.++.+|.++|+.+|
T Consensus 25 ~~l~~~l~~~~-~~V~~a~le~~~P~l~~~l~~l~~~G~~~v 65 (126)
T 3lyh_A 25 EKLAEPTVESI-ENAAIAYMELAEPSLDTIVNRAKGQGVEQF 65 (126)
T ss_dssp HHHHHHHHHHS-TTCEEEESSSSSSBHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhhc-CCEEEEEEeCCCCCHHHHHHHHHHcCCCEE
Confidence 34445555555 333222356789999999999999998764
No 121
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=29.64 E-value=67 Score=25.97 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHHHHhCC-CCCCchHHHhhcC--CCCCcHHHHHhhhchhhhhhc
Q 012449 225 DWTPELHKKFVQAVEQLGV-DQAIPSRILELMK--VEGLTRHNVASHLQKYRMHRR 277 (463)
Q Consensus 225 ~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~--V~gLTr~~VkSHLQKYRl~~k 277 (463)
.||+|-.+..+++|+++|. .. +.|++... ++|-|..++|. |||..++
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W---~~I~~~~~~~~~~RT~~~lKd---rWrnllk 51 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRW---RDVKMRAFDNADHRTYVDLKD---KWKTLVH 51 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCH---HHHHHHHCTTCTTSCHHHHHH---HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCc---HHHHHhhccccCCCCHHHHHH---HHHHHHH
Confidence 5999999999999999995 54 57777532 57899999986 4555443
No 122
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=28.09 E-value=76 Score=26.62 Aligned_cols=49 Identities=12% Similarity=0.341 Sum_probs=40.1
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchhhh
Q 012449 223 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRM 274 (463)
Q Consensus 223 Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl 274 (463)
+..|-...-++.++.+..-| .++|..|-+.+++ |+|+..|..||++-..
T Consensus 7 ~~~~md~~d~~IL~~L~~~g--~~s~~eLA~~l~~-giS~~aVs~rL~~Le~ 55 (111)
T 3b73_A 7 SGSWMTIWDDRILEIIHEEG--NGSPKELEDRDEI-RISKSSVSRRLKKLAD 55 (111)
T ss_dssp CCTTCCHHHHHHHHHHHHHS--CBCHHHHHTSTTC-CSCHHHHHHHHHHHHH
T ss_pred hhhhcCHHHHHHHHHHHHcC--CCCHHHHHHHHhc-CCCHHHHHHHHHHHHH
Confidence 45788888888998887767 6899999887754 7899999999998664
No 123
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=26.72 E-value=5.7 Score=40.54 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=18.7
Q ss_pred HHhhcchhhhhhcCCCHHHHHH
Q 012449 9 NNFQLGAVEFLRKPLSEDKLRN 30 (463)
Q Consensus 9 Kcl~~GA~DyLiKPlr~neLkn 30 (463)
+++..||.|||+||+..++|..
T Consensus 124 ~a~~~ga~d~~~Kp~~~~~l~~ 145 (489)
T 3hu3_A 124 EGITGNLFEVYLKPYFLEAYRP 145 (489)
T ss_dssp SSCCSCHHHHTHHHHHTTTCEE
T ss_pred ccccchhHHHHhHHHHhhcCcc
Confidence 7889999999999998776643
No 124
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=26.66 E-value=1e+02 Score=25.66 Aligned_cols=44 Identities=20% Similarity=0.356 Sum_probs=34.6
Q ss_pred cccCCHHHHHHHHHHHHHhCC-CCCCchHHHhhcCCCCCcHHHHHhhhch
Q 012449 223 KVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQK 271 (463)
Q Consensus 223 Rl~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQK 271 (463)
+-.||+|--++++++|++.|. .. +.|-+.| +|-|..+++.+-..
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~~W---~~Ia~~l--~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPKRW---SDIAKHL--KGRIGKQCRERWHN 71 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCCH---HHHHHHS--SSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCH---HHHHHHh--cCCcHHHHHHHHHH
Confidence 457999999999999999995 23 5677776 58888888865444
No 125
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=24.93 E-value=1.6e+02 Score=22.97 Aligned_cols=60 Identities=17% Similarity=0.320 Sum_probs=41.7
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhC--CCCCCchHHHhhcCCCCCcHHHHHhhhchhhhhhc
Q 012449 218 NRKKMKVDWTPELHKKFVQAVEQLG--VDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRR 277 (463)
Q Consensus 218 ~~kK~Rl~WT~ELH~rFV~AV~qLG--~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k 277 (463)
.+|+.|-..|.+--.....+.+.+| ....+.....+|...-|||..+|+-=.|.-|...+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~ 77 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGP 77 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSS
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCC
Confidence 4667788899876555555666677 44455556666666669999999988877665544
No 126
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=23.93 E-value=60 Score=25.24 Aligned_cols=44 Identities=9% Similarity=0.182 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHhC-CCCCCchHHHhhcCCCCCcHHHHHhhhchh
Q 012449 226 WTPELHKKFVQAVEQLG-VDQAIPSRILELMKVEGLTRHNVASHLQKY 272 (463)
Q Consensus 226 WT~ELH~rFV~AV~qLG-~dkAtPK~ILelM~V~gLTr~~VkSHLQKY 272 (463)
=|+++.++.++++.+.| .+..|.+.|-+.+| +++..|..||.+-
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg---vs~~tV~~~L~~L 55 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLG---TPKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHC---CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHC---cCHHHHHHHHHHH
Confidence 36788888999999999 56688899999996 5567788887554
No 127
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=23.92 E-value=30 Score=26.79 Aligned_cols=49 Identities=20% Similarity=0.112 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhCC-----------CCCCchHHHhhcCCCCCcHHHHHhhhchhhhhhcccC
Q 012449 229 ELHKKFVQAVEQLGV-----------DQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHIL 280 (463)
Q Consensus 229 ELH~rFV~AV~qLG~-----------dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~l 280 (463)
++...+.+|+.+|-. +.-+-+.|-+.| |++...|++||.+-|..+++.+
T Consensus 26 ~~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~eIA~~l---gis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 26 LDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDL---GIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHTSCCCHHHHHHHH---TSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHH---CcCHHHHHHHHHHHHHHHHHHH
Confidence 345556666666541 123334444444 3456667777776666665544
No 128
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=23.44 E-value=35 Score=31.59 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.1
Q ss_pred CCCCCChhHHHHHHHHcCCCCC
Q 012449 432 GLKPPSADSVLAELSRQGISTI 453 (463)
Q Consensus 432 GLKpPs~dsVm~EL~rQGi~~i 453 (463)
|+..|+++.+|.+|..+|+..|
T Consensus 56 g~~~psi~~aL~~l~~~G~~~v 77 (264)
T 2xwp_A 56 GIDIDTPLQALQKLAAQGYQDV 77 (264)
T ss_dssp CCCCCCHHHHHHHHHHHTCCEE
T ss_pred CCCCCCHHHHHHHHHhCCCCEE
Confidence 7799999999999999999863
No 129
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=22.66 E-value=1.9e+02 Score=22.67 Aligned_cols=60 Identities=15% Similarity=0.307 Sum_probs=39.0
Q ss_pred cCCCCCcccCCHHHHHHHHHHHHH-hC--CCCCCchHHHhhcCCCCCcHHHHHhhhchhhhhhc
Q 012449 217 ANRKKMKVDWTPELHKKFVQAVEQ-LG--VDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRR 277 (463)
Q Consensus 217 ~~~kK~Rl~WT~ELH~rFV~AV~q-LG--~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k 277 (463)
..+|+.|-..|.+--.... ++.+ || ....+.....+|...-|||..+|+.=.|.-|...+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~ 77 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP 77 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCC
Confidence 3566778888886433333 4554 66 34445556666666669999999988877665544
No 130
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=21.39 E-value=1.4e+02 Score=25.62 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=36.1
Q ss_pred CcccCCHHHHHHHHHHHHHhCCCCCCchHHHhhcCCCCCcHHHHHhhhchh
Q 012449 222 MKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 272 (463)
Q Consensus 222 ~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKY 272 (463)
.+-.||+|-.++++++|+++|... =..|-+.| +|-|..+++.+-..|
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~--W~~Ia~~l--~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKR--WSVIAKHL--KGRIGKQCRERWHNH 103 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCC--HHHHHHTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHhCccc--HHHHHHHc--CCCCHHHHHHHHHHH
Confidence 356899999999999999999421 25677776 688999998765443
No 131
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=21.07 E-value=62 Score=26.95 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhCC-----------CCCCchHHHhhcCCCCCcHHHHHhhhchhhhhhcccC
Q 012449 229 ELHKKFVQAVEQLGV-----------DQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHIL 280 (463)
Q Consensus 229 ELH~rFV~AV~qLG~-----------dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~l 280 (463)
|+...+.+|+.+|.. +.-+.+.|-+.| |++...|+++|++-|..+++.+
T Consensus 129 e~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~l---gis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 129 ELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIM---DCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHT---TSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHhHHHHHcCCCHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHH
Confidence 455555566666542 234555555555 4567777888777777666544
No 132
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=20.79 E-value=34 Score=22.05 Aligned_cols=7 Identities=57% Similarity=0.634 Sum_probs=5.3
Q ss_pred CCCCCCC
Q 012449 431 LGLKPPS 437 (463)
Q Consensus 431 LGLKpPs 437 (463)
|||||++
T Consensus 14 lGLkplp 20 (21)
T 3plv_C 14 LGLKLIP 20 (26)
T ss_dssp TTCCCCC
T ss_pred cCCCCCC
Confidence 7888865
No 133
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=20.21 E-value=96 Score=26.03 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHHHHhCC-CCCCchHHHhhcCCCCCcHHHHHhhhchh
Q 012449 225 DWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKY 272 (463)
Q Consensus 225 ~WT~ELH~rFV~AV~qLG~-dkAtPK~ILelM~V~gLTr~~VkSHLQKY 272 (463)
.||+|--++.+++|.+.|. +. +.|-+.| +|-|..++.-+-+.|
T Consensus 4 ~Wt~eED~~L~~~v~~~g~~~W---~~Ia~~~--~~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 4 PFTEAEDDLIREYVKENGPQNW---PRITSFL--PNRSPKQCRERWFNH 47 (131)
T ss_dssp SCCHHHHHHHHHHHHHHCSCCG---GGGTTSC--TTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCCH---HHHHHHH--CCCCHHHHHHHHhhc
Confidence 6999999999999999993 33 4555555 577888876554443
Done!