Query 012450
Match_columns 463
No_of_seqs 457 out of 3780
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 02:46:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2.2E-39 4.8E-44 367.5 32.6 388 3-437 632-1100(1153)
2 PLN00113 leucine-rich repeat r 99.8 9.4E-21 2E-25 214.0 14.3 202 24-225 157-366 (968)
3 PLN00113 leucine-rich repeat r 99.8 1E-20 2.2E-25 213.8 13.7 208 2-211 161-373 (968)
4 PLN03210 Resistant to P. syrin 99.8 2.8E-19 6E-24 203.8 17.5 241 4-253 610-908 (1153)
5 KOG0444 Cytoskeletal regulator 99.8 2.6E-21 5.6E-26 193.9 -2.5 203 4-211 102-309 (1255)
6 KOG0444 Cytoskeletal regulator 99.7 3.6E-20 7.9E-25 185.7 -4.8 225 3-233 124-380 (1255)
7 KOG0472 Leucine-rich repeat pr 99.7 1.6E-19 3.4E-24 173.2 -7.2 247 3-259 66-317 (565)
8 KOG0617 Ras suppressor protein 99.7 4.8E-19 1E-23 151.9 -4.0 174 47-225 26-200 (264)
9 KOG0472 Leucine-rich repeat pr 99.7 2.4E-19 5.2E-24 171.9 -11.2 206 3-219 89-296 (565)
10 KOG0617 Ras suppressor protein 99.6 2E-18 4.3E-23 148.1 -5.4 166 25-193 27-195 (264)
11 KOG4194 Membrane glycoprotein 99.6 1E-16 2.3E-21 160.2 4.4 66 145-211 266-333 (873)
12 KOG4194 Membrane glycoprotein 99.6 5.4E-17 1.2E-21 162.2 1.9 200 2-205 146-376 (873)
13 PRK15370 E3 ubiquitin-protein 99.6 2.8E-15 6E-20 161.6 13.2 198 6-224 179-397 (754)
14 PRK15370 E3 ubiquitin-protein 99.6 7.7E-16 1.7E-20 165.9 8.7 187 5-212 199-405 (754)
15 PRK15387 E3 ubiquitin-protein 99.6 9.7E-15 2.1E-19 156.7 13.4 110 7-134 203-312 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 2.8E-14 6E-19 153.3 15.0 200 5-235 222-421 (788)
17 KOG0618 Serine/threonine phosp 99.6 1.5E-16 3.2E-21 166.7 -3.4 215 5-227 241-488 (1081)
18 KOG0618 Serine/threonine phosp 99.4 1.7E-14 3.8E-19 151.4 0.7 196 31-231 219-467 (1081)
19 cd00116 LRR_RI Leucine-rich re 99.4 2E-14 4.4E-19 141.7 -1.7 202 24-225 16-260 (319)
20 cd00116 LRR_RI Leucine-rich re 99.4 1.1E-13 2.4E-18 136.3 0.4 220 3-225 21-288 (319)
21 KOG4658 Apoptotic ATPase [Sign 99.3 7.4E-13 1.6E-17 145.1 2.0 228 3-233 543-788 (889)
22 KOG0532 Leucine-rich repeat (L 99.3 1.1E-13 2.3E-18 138.8 -4.8 209 10-225 55-270 (722)
23 KOG4237 Extracellular matrix p 99.3 3E-13 6.5E-18 130.2 -2.2 204 6-212 68-340 (498)
24 COG4886 Leucine-rich repeat (L 99.2 5.6E-12 1.2E-16 128.4 4.9 171 30-204 115-287 (394)
25 KOG4237 Extracellular matrix p 99.1 1.3E-12 2.7E-17 126.0 -5.3 202 1-205 87-357 (498)
26 COG4886 Leucine-rich repeat (L 99.1 2.4E-11 5.2E-16 123.8 3.6 183 3-192 114-298 (394)
27 KOG1259 Nischarin, modulator o 99.1 9.4E-12 2E-16 116.1 0.5 125 77-205 284-410 (490)
28 KOG0532 Leucine-rich repeat (L 99.1 2.5E-12 5.3E-17 129.1 -3.8 190 8-205 78-271 (722)
29 KOG3207 Beta-tubulin folding c 99.0 1.8E-11 3.9E-16 119.5 -1.4 176 29-205 119-312 (505)
30 KOG1259 Nischarin, modulator o 99.0 1.5E-10 3.2E-15 108.2 1.0 124 98-225 281-409 (490)
31 KOG3207 Beta-tubulin folding c 98.9 1E-10 2.3E-15 114.3 -0.5 200 3-205 119-337 (505)
32 PF14580 LRR_9: Leucine-rich r 98.9 7.1E-10 1.5E-14 98.8 3.7 61 145-205 61-124 (175)
33 PF14580 LRR_9: Leucine-rich r 98.9 5.9E-10 1.3E-14 99.3 2.3 136 63-203 6-149 (175)
34 KOG4658 Apoptotic ATPase [Sign 98.9 1.7E-09 3.7E-14 119.0 5.8 129 30-159 522-653 (889)
35 PRK15386 type III secretion pr 98.7 2.6E-08 5.7E-13 99.3 8.5 162 73-253 48-215 (426)
36 PRK15386 type III secretion pr 98.7 5E-08 1.1E-12 97.3 8.5 54 171-227 156-212 (426)
37 KOG0531 Protein phosphatase 1, 98.6 5.5E-09 1.2E-13 107.1 -0.8 192 4-205 71-266 (414)
38 KOG0531 Protein phosphatase 1, 98.6 6E-09 1.3E-13 106.8 -1.5 170 29-205 70-243 (414)
39 KOG1909 Ran GTPase-activating 98.6 9.7E-09 2.1E-13 98.1 -0.2 180 3-183 28-253 (382)
40 PLN03150 hypothetical protein; 98.5 1.3E-07 2.9E-12 101.5 7.0 109 103-211 420-532 (623)
41 KOG4341 F-box protein containi 98.5 2.3E-09 4.9E-14 104.5 -6.9 226 6-231 139-417 (483)
42 PLN03150 hypothetical protein; 98.4 4.4E-07 9.5E-12 97.6 8.0 107 55-161 419-528 (623)
43 KOG2120 SCF ubiquitin ligase, 98.4 2.2E-09 4.7E-14 100.4 -9.2 172 32-204 186-373 (419)
44 KOG1909 Ran GTPase-activating 98.4 3E-08 6.5E-13 94.9 -2.0 202 2-205 55-309 (382)
45 KOG4341 F-box protein containi 98.3 1.3E-08 2.7E-13 99.4 -6.1 222 2-230 161-430 (483)
46 PF13855 LRR_8: Leucine rich r 98.3 4.5E-07 9.7E-12 66.3 2.8 58 148-205 1-60 (61)
47 PF13855 LRR_8: Leucine rich r 98.3 7.8E-07 1.7E-11 65.0 3.6 57 55-112 2-60 (61)
48 KOG2120 SCF ubiquitin ligase, 98.2 2E-08 4.4E-13 94.1 -6.5 150 56-205 187-349 (419)
49 KOG1859 Leucine-rich repeat pr 98.1 7.4E-08 1.6E-12 99.8 -5.8 16 26-41 104-119 (1096)
50 KOG1859 Leucine-rich repeat pr 98.1 7.4E-08 1.6E-12 99.8 -5.9 175 2-184 106-292 (1096)
51 KOG2982 Uncharacterized conser 97.9 1E-05 2.2E-10 76.2 3.9 199 30-233 44-286 (418)
52 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.3E-10 54.6 3.0 39 149-187 2-40 (44)
53 KOG3665 ZYG-1-like serine/thre 97.8 8.1E-06 1.8E-10 88.1 2.2 105 5-112 122-231 (699)
54 KOG2982 Uncharacterized conser 97.8 4.1E-06 8.9E-11 78.8 -0.8 178 4-184 70-262 (418)
55 KOG3665 ZYG-1-like serine/thre 97.7 9.3E-06 2E-10 87.6 0.8 129 54-183 122-262 (699)
56 PF12799 LRR_4: Leucine Rich r 97.7 2.3E-05 4.9E-10 53.0 2.3 42 171-213 1-42 (44)
57 KOG1947 Leucine rich repeat pr 97.7 4.2E-06 9.1E-11 87.1 -2.9 108 30-137 187-308 (482)
58 KOG4579 Leucine-rich repeat (L 97.4 9.8E-06 2.1E-10 68.0 -3.1 56 149-204 78-133 (177)
59 KOG1947 Leucine rich repeat pr 97.4 2.1E-05 4.4E-10 81.9 -1.7 171 3-183 186-374 (482)
60 KOG1644 U2-associated snRNP A' 97.4 0.00035 7.7E-09 62.6 6.1 102 56-158 44-150 (233)
61 KOG4579 Leucine-rich repeat (L 97.3 1.1E-05 2.4E-10 67.7 -3.6 85 50-135 49-134 (177)
62 KOG1644 U2-associated snRNP A' 97.1 0.00084 1.8E-08 60.2 5.0 102 76-180 41-149 (233)
63 COG5238 RNA1 Ran GTPase-activa 96.9 0.00056 1.2E-08 64.0 2.7 58 148-205 157-225 (388)
64 KOG2123 Uncharacterized conser 96.8 4.9E-05 1.1E-09 71.1 -4.8 82 5-91 19-102 (388)
65 KOG2123 Uncharacterized conser 96.8 0.00018 3.9E-09 67.4 -1.4 83 124-209 19-103 (388)
66 KOG2739 Leucine-rich acidic nu 96.8 0.00034 7.5E-09 65.1 0.1 102 123-227 42-155 (260)
67 COG5238 RNA1 Ran GTPase-activa 96.7 0.00051 1.1E-08 64.3 0.4 157 27-184 26-227 (388)
68 KOG2739 Leucine-rich acidic nu 96.6 0.001 2.2E-08 62.0 1.9 107 27-135 39-154 (260)
69 PF13306 LRR_5: Leucine rich r 95.2 0.06 1.3E-06 45.0 6.4 56 27-85 8-66 (129)
70 PF13306 LRR_5: Leucine rich r 95.1 0.064 1.4E-06 44.8 6.5 100 2-110 9-112 (129)
71 PF00560 LRR_1: Leucine Rich R 94.7 0.011 2.4E-07 33.4 0.4 18 173-190 2-19 (22)
72 PF00560 LRR_1: Leucine Rich R 94.4 0.015 3.2E-07 32.8 0.5 18 56-73 2-19 (22)
73 PF13504 LRR_7: Leucine rich r 93.2 0.033 7.2E-07 29.2 0.5 10 150-159 3-12 (17)
74 KOG3864 Uncharacterized conser 93.0 0.011 2.3E-07 53.3 -2.7 80 7-88 103-187 (221)
75 PF13504 LRR_7: Leucine rich r 92.2 0.094 2E-06 27.5 1.4 13 56-68 3-15 (17)
76 KOG4308 LRR-containing protein 89.7 0.0035 7.7E-08 65.0 -10.6 18 50-67 111-128 (478)
77 KOG3864 Uncharacterized conser 88.9 0.062 1.4E-06 48.5 -1.9 35 170-204 150-186 (221)
78 smart00369 LRR_TYP Leucine-ric 86.1 0.41 8.8E-06 27.9 1.1 19 171-189 2-20 (26)
79 smart00370 LRR Leucine-rich re 86.1 0.41 8.8E-06 27.9 1.1 19 171-189 2-20 (26)
80 smart00369 LRR_TYP Leucine-ric 86.0 0.55 1.2E-05 27.3 1.6 20 53-72 1-20 (26)
81 smart00370 LRR Leucine-rich re 86.0 0.55 1.2E-05 27.3 1.6 20 53-72 1-20 (26)
82 KOG0473 Leucine-rich repeat pr 84.9 0.027 5.8E-07 51.9 -6.5 84 50-134 38-121 (326)
83 smart00367 LRR_CC Leucine-rich 83.8 0.67 1.5E-05 27.1 1.3 18 4-21 1-18 (26)
84 KOG0473 Leucine-rich repeat pr 80.8 0.075 1.6E-06 49.0 -5.3 83 122-205 40-122 (326)
85 KOG4308 LRR-containing protein 77.2 0.053 1.1E-06 56.4 -8.5 151 56-206 89-274 (478)
86 smart00364 LRR_BAC Leucine-ric 72.1 1.6 3.6E-05 25.6 0.5 18 171-188 2-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 58.5 7.3 0.00016 22.9 1.5 16 54-69 2-17 (26)
88 PF13516 LRR_6: Leucine Rich r 57.3 3.9 8.4E-05 23.1 0.2 14 171-184 2-15 (24)
89 KOG3763 mRNA export factor TAP 46.5 9 0.0002 40.0 1.0 78 146-224 216-310 (585)
90 smart00368 LRR_RI Leucine rich 34.0 27 0.00058 20.6 1.3 13 149-161 3-15 (28)
91 KOG3763 mRNA export factor TAP 27.4 31 0.00067 36.2 1.2 17 319-335 440-457 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.2e-39 Score=367.49 Aligned_cols=388 Identities=26% Similarity=0.383 Sum_probs=232.1
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeecc-CCCccCccccCCCCcc
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGT-AIEELPSSIGCLSRLL 80 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~ 80 (463)
.+++|+.|+|++|+.++.+ | .++.+++|+.|+|++|..+..+|. ++.+++|+.|++++| .++.+|..+ ++++|+
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~i--p-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEI--P-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred cCCCCCEEECCCCCCcCcC--C-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 3445555555554444444 2 244455555555555555555554 455555555555543 344444433 445555
Q ss_pred EEeeecCCCCCccchhcCCCCCCcEEEEECCCCcc---------------------------------------------
Q 012450 81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE--------------------------------------------- 115 (463)
Q Consensus 81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~--------------------------------------------- 115 (463)
.|++++|..+..+|.. ..+|+.|++++|.++.
T Consensus 708 ~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred EEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhee
Confidence 5555555444333321 1223333333333333
Q ss_pred ---------CCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCC-CcccccCCcccccccccccccccc
Q 012450 116 ---------LPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT-ELPESLGLLSSLEELYLERNNFER 185 (463)
Q Consensus 116 ---------lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~-~~p~~l~~l~~L~~L~Ls~n~l~~ 185 (463)
+|..++++++|+.|++++|..++.+|... ++++|+.|++++|... .+|. ..++|+.|+|++|.++.
T Consensus 785 Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~ 860 (1153)
T PLN03210 785 LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEE 860 (1153)
T ss_pred CCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECCCCCCcc
Confidence 34444445555555555555555554432 4455555555555322 2332 23567788888888888
Q ss_pred cchhhhCCCCccEeccccccccccCCCCC---CCccEeeccCcccccccccCCCCce---------------eEEEeecC
Q 012450 186 IPESIIRLSKLSSLLVSYCERLQSLPKLP---CNLYWLDAQHCTTLESLSGLFSSYK---------------CVFFYLNE 247 (463)
Q Consensus 186 lp~~l~~l~~L~~L~L~~c~~l~~l~~l~---~~L~~L~i~~c~~L~~l~~~~~~~~---------------~~~~~~~~ 247 (463)
+|.++..+++|+.|++++|..++.+|... ++|+.+++.+|.+|+.++....... ....|.+
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~n- 939 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFIN- 939 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhcccccc-
Confidence 99999999999999999999999988644 4677889999999987654221100 0113555
Q ss_pred ccchHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccccceEeecCCCCCccccccCCCceEE-EEcCCCCCCCCceee
Q 012450 248 NFKLDRKLRGIVEDALQNIQLMATARWKEIREKISYPALQGHVVLPGNEIPMWFSSQGMGSSIT-LKMQPGCFSNNKVFG 326 (463)
Q Consensus 248 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~si~-~~lp~~~~~~~~~~g 326 (463)
|++|++.+. ++ ....+..+++||.++|+||.||+.|++++ |.+|+. |....|.|
T Consensus 940 C~~L~~~a~---------l~---------------~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~-~~~~~~~~ 994 (1153)
T PLN03210 940 CFNLDQEAL---------LQ---------------QQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHI-SPCQPFFR 994 (1153)
T ss_pred ccCCCchhh---------hc---------------ccccceEEECCCccCchhccCCcccceeeeeccCCc-ccCCCccc
Confidence 888876442 00 01112338899999999999999999998 999999 99899999
Q ss_pred eEeEEEEEecCCC--CCCceeEEEEEEEccCCCCCCce--eEEecCCccccCCCeEEEEEEeeec-CCcCCCcCCCCCCc
Q 012450 327 FVFCAIVAFRDHH--VRDWSFKFYCEFKIKLKDCDPHV--IQRYLGRVNYVEPDHLLLGYYFFNH-QDLNGCWEYNCVPE 401 (463)
Q Consensus 327 f~~c~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~sdh~~l~~~~~~~-~~~~~~~~~~~~~~ 401 (463)
|++|+|+++.... ...+.++|.|+|.+..|+++... .+.+. ....++|+++|...... ......+ .+.++
T Consensus 995 f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~ 1069 (1153)
T PLN03210 995 FRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDSPYQPHVFS---VTKKGSHLVIFDCCFPLNEDNAPLA--ELNYD 1069 (1153)
T ss_pred eEEEEEEecCccccCCCceeEEEEEEEECCCCCccccCCCceeEe---eeccccceEEecccccccccccchh--ccCCc
Confidence 9999999876632 23567889999999888765410 01110 12346677666541000 0000011 24567
Q ss_pred eEEEEEEEecCccccccCceeEEeeccEEEEecCCC
Q 012450 402 AVQFYFKKVLGSETETLDCCGVKKCGIHLFHASDSM 437 (463)
Q Consensus 402 ~~~~~f~~~~~~~~~~~~~~~vk~cGv~li~~~~~~ 437 (463)
+++++|...+.. ..++||+|||+++|+.+..
T Consensus 1070 ~~~~~f~~~~~~-----~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1070 HVDIQFRLTNKN-----SQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred eeeEEEEEecCC-----CCeEEEeeeEEEeccCCCc
Confidence 888888866543 1379999999999966544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=9.4e-21 Score=214.05 Aligned_cols=202 Identities=26% Similarity=0.324 Sum_probs=99.1
Q ss_pred cccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCC-ccCccccCCCCccEEeeecCCCCCccchhcCCCC
Q 012450 24 PSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLK 101 (463)
Q Consensus 24 ~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 101 (463)
|..++.+++|++|++++|.....+|. ++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..+++++
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236 (968)
T ss_pred ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence 34444455555555555444444444 444555555555555443 3444445555555555555444444454455555
Q ss_pred CCcEEEEECCCCc-cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC-cccccCCcccccccccc
Q 012450 102 SLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLE 179 (463)
Q Consensus 102 ~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls 179 (463)
+|++|++++|.+. .+|..++.+++|+.|++++|.....+|..+.++++|+.|++++|.+.. +|..+..+++|+.|+++
T Consensus 237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 5555555555443 344445555555555555544333444444455555555555555443 44445555555555555
Q ss_pred ccccc-ccchhhhCCCCccEeccccccccccCCCC---CCCccEeeccCc
Q 012450 180 RNNFE-RIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHC 225 (463)
Q Consensus 180 ~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c 225 (463)
+|.++ .+|..+..+++|+.|++++|.....+|.. .++|+.|+++++
T Consensus 317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 55543 34444555555555555555433333321 234555555444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=1e-20 Score=213.76 Aligned_cols=208 Identities=25% Similarity=0.326 Sum_probs=174.3
Q ss_pred CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCC-ccCccccCCCCc
Q 012450 2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSRL 79 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L 79 (463)
+.+++|++|+|++|.....+ |..+.++++|++|++++|.....+|. ++.+++|++|++++|.+. .+|..++.+++|
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKI--PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred hcCCCCCEEECccCcccccC--ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 46789999999987666667 78889999999999999887777887 889999999999999887 688889999999
Q ss_pred cEEeeecCCCCCccchhcCCCCCCcEEEEECCCCc-cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCC
Q 012450 80 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC 158 (463)
Q Consensus 80 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~ 158 (463)
++|++++|.....+|..++++++|+.|++++|.+. .+|..+..+++|++|++++|.....+|..+.++++|+.|++++|
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 99999998777788888999999999999999886 57788888899999999988766677777788888888888888
Q ss_pred CCCC-cccccCCccccccccccccccc-ccchhhhCCCCccEeccccccccccCC
Q 012450 159 AITE-LPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSLP 211 (463)
Q Consensus 159 ~l~~-~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~l~ 211 (463)
.+.+ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.....+|
T Consensus 319 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 8775 7777888888888888888875 677778888888888888776444443
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=2.8e-19 Score=203.81 Aligned_cols=241 Identities=32% Similarity=0.487 Sum_probs=176.3
Q ss_pred CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeecc-CCCccCccccCCCCccEE
Q 012450 4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGT-AIEELPSSIGCLSRLLEL 82 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L 82 (463)
..+|++|+|.+ +.+..+ |..+..+++|+.|+|++|..++.+|.++.+++|+.|++++| .+..+|.+++++++|+.|
T Consensus 610 ~~~L~~L~L~~-s~l~~L--~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 610 PENLVKLQMQG-SKLEKL--WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred ccCCcEEECcC-cccccc--ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 46788888888 457777 77888899999999999888999998888999999999986 677889889999999999
Q ss_pred eeecCCCCCccchhcCCCCCCcEEEEECCCC-ccCCccCCCCCCccEEecCCCCCCCcCcccC-----------------
Q 012450 83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAI-EELPSPIECLSALCVLDLGDCKSLKSLKLPF----------------- 144 (463)
Q Consensus 83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i-~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l----------------- 144 (463)
++++|..++.+|..+ ++++|+.|++++|.. ..+|.. ..+|+.|+++++. ++.+|..+
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEK 761 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccccccccccccccccchhh
Confidence 999999999998766 788999999998753 344432 4567777777665 44444321
Q ss_pred -------------CCCCCccEEEeeCCCC-CCcccccCCcccccccccccc-cccccchhhhCCCCccEecccccccccc
Q 012450 145 -------------DGLYSLTYLYLTDCAI-TELPESLGLLSSLEELYLERN-NFERIPESIIRLSKLSSLLVSYCERLQS 209 (463)
Q Consensus 145 -------------~~l~~L~~L~L~~~~l-~~~p~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~c~~l~~ 209 (463)
...++|+.|+|++|.. .++|..++++++|+.|++++| .++.+|..+ .+++|+.|++++|..++.
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence 1134677788887753 448888888888888888887 467777655 678888888888877776
Q ss_pred CCCCC-----------------------CCccEeeccCcccccccccCCCCceeE-EEeecCccchHH
Q 012450 210 LPKLP-----------------------CNLYWLDAQHCTTLESLSGLFSSYKCV-FFYLNENFKLDR 253 (463)
Q Consensus 210 l~~l~-----------------------~~L~~L~i~~c~~L~~l~~~~~~~~~~-~~~~~~c~~l~~ 253 (463)
+|..+ ++|+.|++.+|.+|+.++.....+..+ .+..++|.+|..
T Consensus 841 ~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 841 FPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 66543 345566666777777766554443332 123344777754
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=2.6e-21 Score=193.91 Aligned_cols=203 Identities=24% Similarity=0.344 Sum_probs=135.7
Q ss_pred CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCccccCCCCccE
Q 012450 4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSIGCLSRLLE 81 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 81 (463)
+..|..|||++ +.++++ |..+...+++-+|+|++ +++..+|. +-++..|-.|+|++|.+..+|+.+.++..|++
T Consensus 102 l~dLt~lDLSh-NqL~Ev--P~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 102 LKDLTILDLSH-NQLREV--PTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred cccceeeecch-hhhhhc--chhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence 44455555555 445555 45555555555555555 34555554 44555555556666666566666666666666
Q ss_pred EeeecCCCCCccchhcCCCCCCcEEEEECCCCc--cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCC
Q 012450 82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE--ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCA 159 (463)
Q Consensus 82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~ 159 (463)
|.|++|.....--..+-.+++|+.|.+++++-+ .+|.++..+.+|+.+|++.|. +..+|..+.++++|+.|+|++|.
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCc
Confidence 666655432211122333555666666666544 678888888999999998654 78888888889999999999999
Q ss_pred CCCcccccCCcccccccccccccccccchhhhCCCCccEecccccc-ccccCC
Q 012450 160 ITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE-RLQSLP 211 (463)
Q Consensus 160 l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~-~l~~l~ 211 (463)
++++....+...+|++|++|+|+++.+|..+.++++|+.|.+.+|+ ....||
T Consensus 257 iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 257 ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCc
Confidence 9887767777888888888888888888888888888888887775 233444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=3.6e-20 Score=185.73 Aligned_cols=225 Identities=28% Similarity=0.400 Sum_probs=173.8
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CC------------------------CCCCcc
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-IS------------------------SAGNIE 57 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~------------------------~l~~L~ 57 (463)
.+.++-.|+|++ +++..+| .+.+-++..|-.|||++ +.+..+|. +. .|++|+
T Consensus 124 ~AKn~iVLNLS~-N~IetIP-n~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 124 YAKNSIVLNLSY-NNIETIP-NSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred hhcCcEEEEccc-CccccCC-chHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence 345566666666 4555553 23334555555555555 34444443 33 355566
Q ss_pred EEEeeccC--CCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCC
Q 012450 58 KILLDGTA--IEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCK 135 (463)
Q Consensus 58 ~L~L~~~~--i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~ 135 (463)
.|.+++++ +..+|.++..+.+|..++++. +++..+|+.+.++++|+.|+|++|.|+++.-..+.+.+|+.|+++.|+
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch
Confidence 66666653 336788888889999999987 568889999999999999999999999998888889999999999876
Q ss_pred CCCcCcccCCCCCCccEEEeeCCCCC--CcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCC-
Q 012450 136 SLKSLKLPFDGLYSLTYLYLTDCAIT--ELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK- 212 (463)
Q Consensus 136 ~l~~l~~~l~~l~~L~~L~L~~~~l~--~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~- 212 (463)
++.+|..+.+++.|+.|.+.+|+++ ++|+.|+.+..|+.+..++|++.-+|+.+..|.+|+.|.|++|. |-.+|+
T Consensus 280 -Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPea 357 (1255)
T KOG0444|consen 280 -LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEA 357 (1255)
T ss_pred -hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhh
Confidence 8889999999999999999999765 59999999999999999999999999999999999999999874 445664
Q ss_pred --CCCCccEeeccCccccccccc
Q 012450 213 --LPCNLYWLDAQHCTTLESLSG 233 (463)
Q Consensus 213 --l~~~L~~L~i~~c~~L~~l~~ 233 (463)
+.+.|+.||++..++|.--|.
T Consensus 358 IHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 358 IHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhcCCcceeeccCCcCccCCCC
Confidence 567889999999888875544
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=1.6e-19 Score=173.19 Aligned_cols=247 Identities=29% Similarity=0.386 Sum_probs=175.7
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccE
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLE 81 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 81 (463)
+++.|..|++.+ +.+.+. |+.++.+.+++.|+.++ +++..+|. ++.+.+|.+|+++.|.++++|++++.+-.|..
T Consensus 66 nL~~l~vl~~~~-n~l~~l--p~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 66 NLACLTVLNVHD-NKLSQL--PAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLED 141 (565)
T ss_pred cccceeEEEecc-chhhhC--CHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhh
Confidence 455566666666 556666 66677777777777776 35556665 66777777777777777777777777777777
Q ss_pred EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCC
Q 012450 82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT 161 (463)
Q Consensus 82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~ 161 (463)
|+..+| ++.++|.++.++.+|..|++.+|.++.+|+..-.++.|++|+...|- ++.+|..++++.+|+.|++..|.+.
T Consensus 142 l~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 142 LDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred hhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhcccc
Confidence 776663 45667777777777777777777777777666667778888776654 7778888888889999999999888
Q ss_pred CcccccCCcccccccccccccccccchhhh-CCCCccEeccccccccccCCC---CCCCccEeeccCcccccccccCCCC
Q 012450 162 ELPESLGLLSSLEELYLERNNFERIPESII-RLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQHCTTLESLSGLFSS 237 (463)
Q Consensus 162 ~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~L~~c~~l~~l~~---l~~~L~~L~i~~c~~L~~l~~~~~~ 237 (463)
.+| .+..|..|++|+++.|.++.+|+... ++++|..||+..| ++++.|. +..+|++||+++ ..+.+++.....
T Consensus 220 ~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgn 296 (565)
T KOG0472|consen 220 FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGN 296 (565)
T ss_pred cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccC-CccccCCccccc
Confidence 888 68888889999999888888887665 7889999999987 5777775 346788888877 356666665555
Q ss_pred ceeEEEeecCccchHHHHhHHH
Q 012450 238 YKCVFFYLNENFKLDRKLRGIV 259 (463)
Q Consensus 238 ~~~~~~~~~~c~~l~~~~~~~~ 259 (463)
+...++... -.-+...-++++
T Consensus 297 lhL~~L~le-GNPlrTiRr~ii 317 (565)
T KOG0472|consen 297 LHLKFLALE-GNPLRTIRREII 317 (565)
T ss_pred ceeeehhhc-CCchHHHHHHHH
Confidence 433332333 223444444554
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=4.8e-19 Score=151.94 Aligned_cols=174 Identities=30% Similarity=0.388 Sum_probs=103.3
Q ss_pred CCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCc
Q 012450 47 LPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSAL 126 (463)
Q Consensus 47 lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L 126 (463)
+|.+..+.+++.|.|++|+++.+|+.|..+.+|+.|++.+ +.++.+|..++.+++|+.|++.-|++..+|..++.++.|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 3334445555555666666666666666666666666655 345556655666666666666666666666666666666
Q ss_pred cEEecCCCCC-CCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEecccccc
Q 012450 127 CVLDLGDCKS-LKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 127 ~~L~l~~c~~-l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~ 205 (463)
+.||+.+|.. -..+|..+..++.|+.|+|++|.+.-+|..++.+++|+.|.+.+|.+-++|..++.++.|++|.+.+|.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 6666655442 223555566666666666666666666666666777777777776666666666666777777666652
Q ss_pred ccccCCCCCCCccEeeccCc
Q 012450 206 RLQSLPKLPCNLYWLDAQHC 225 (463)
Q Consensus 206 ~l~~l~~l~~~L~~L~i~~c 225 (463)
++ .+|+.+..|++.+-
T Consensus 185 -l~---vlppel~~l~l~~~ 200 (264)
T KOG0617|consen 185 -LT---VLPPELANLDLVGN 200 (264)
T ss_pred -ee---ecChhhhhhhhhhh
Confidence 22 33444444444443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=2.4e-19 Score=171.89 Aligned_cols=206 Identities=29% Similarity=0.374 Sum_probs=172.8
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccE
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLE 81 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 81 (463)
.+.+++.|+.++ +++.++ |..+..+.+|+.|+++++ .++++|+ ++.+-.|+.|+..+|++.++|..+.++.+|..
T Consensus 89 ~l~~l~~l~vs~-n~ls~l--p~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~ 164 (565)
T KOG0472|consen 89 ELEALKSLNVSH-NKLSEL--PEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSK 164 (565)
T ss_pred HHHHHHHhhccc-chHhhc--cHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHH
Confidence 345677888888 678888 788999999999999995 5566666 99999999999999999999999999999999
Q ss_pred EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCC
Q 012450 82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT 161 (463)
Q Consensus 82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~ 161 (463)
|++.++ .++.+|...-+++.|++|+...|-++.+|+.++.+.+|..|++..|+ +..+| .+.++..|++|+++.|.+.
T Consensus 165 l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~N~i~ 241 (565)
T KOG0472|consen 165 LDLEGN-KLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGENQIE 241 (565)
T ss_pred hhcccc-chhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCC-CCCccHHHHHHHhcccHHH
Confidence 999995 56667666656999999999999999999999999999999999876 77788 4888899999999999888
Q ss_pred CcccccC-CcccccccccccccccccchhhhCCCCccEeccccccccccCCCCCCCccE
Q 012450 162 ELPESLG-LLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYW 219 (463)
Q Consensus 162 ~~p~~l~-~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~~~L~~ 219 (463)
-+|.... ++++|..||+++|+++++|..+..+.+|++||+++| +|..+|.+|-.
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN----~is~Lp~sLgn 296 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN----DISSLPYSLGN 296 (565)
T ss_pred hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCC----ccccCCccccc
Confidence 8887665 888999999999999999998888999999999987 44444444433
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2e-18 Score=148.15 Aligned_cols=166 Identities=31% Similarity=0.460 Sum_probs=150.1
Q ss_pred ccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCC
Q 012450 25 SLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSL 103 (463)
Q Consensus 25 ~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L 103 (463)
.++-.+.+++.|.|+++ ++..+|. +..+.+|+.|++.+|+|+++|.++..+++|+.|++.- +.+..+|.+++.++.|
T Consensus 27 ~gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPAL 104 (264)
T ss_pred ccccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchh
Confidence 45557888999999995 6666666 9999999999999999999999999999999999987 4678899999999999
Q ss_pred cEEEEECCCCc--cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccc
Q 012450 104 EEICLTGSAIE--ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERN 181 (463)
Q Consensus 104 ~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n 181 (463)
+.|++.+|.+. .+|..+..++.|+.|++++|. .+.+|...+++++|+.|.+.+|.+.++|..++.++.|++|++.+|
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 99999999887 689999999999999999977 678888899999999999999999999999999999999999999
Q ss_pred cccccchhhhCC
Q 012450 182 NFERIPESIIRL 193 (463)
Q Consensus 182 ~l~~lp~~l~~l 193 (463)
+++-+|..++++
T Consensus 184 rl~vlppel~~l 195 (264)
T KOG0617|consen 184 RLTVLPPELANL 195 (264)
T ss_pred eeeecChhhhhh
Confidence 999999776543
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.64 E-value=1e-16 Score=160.20 Aligned_cols=66 Identities=32% Similarity=0.274 Sum_probs=35.2
Q ss_pred CCCCCccEEEeeCCCCCCc-ccccCCcccccccccccccccccc-hhhhCCCCccEeccccccccccCC
Q 012450 145 DGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLP 211 (463)
Q Consensus 145 ~~l~~L~~L~L~~~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~ 211 (463)
.++.++++|+|..|++..+ ..++.++++|+.|+|+.|.+..+. +.-..+++|+.|+|++| .++.++
T Consensus 266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~ 333 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLD 333 (873)
T ss_pred eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCC
Confidence 3344445555555554442 235556666666666666665432 23344566666666665 344444
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.63 E-value=5.4e-17 Score=162.24 Aligned_cols=200 Identities=23% Similarity=0.291 Sum_probs=117.8
Q ss_pred CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCC
Q 012450 2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSR 78 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~ 78 (463)
+.++.|+.|||+. +.+.+++ ...+..-.++++|+|++| .++.+.. +..+.+|..|.|+.|+|+.+|.- +.+|++
T Consensus 146 ~~l~alrslDLSr-N~is~i~-~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 146 SALPALRSLDLSR-NLISEIP-KPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred HhHhhhhhhhhhh-chhhccc-CCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence 3456777777777 5666664 344555567777777773 4555544 66666777777777777776654 444677
Q ss_pred ccEEeeecCCCCCcc-c------------------------hhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecC
Q 012450 79 LLELNLGDCKNLKTL-P------------------------SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLG 132 (463)
Q Consensus 79 L~~L~l~~c~~l~~l-p------------------------~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~ 132 (463)
|+.|+|..|. ++.. . ..+..+.++++|+|..|+++.+.. ++.+++.|+.|+++
T Consensus 223 L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 223 LESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred hhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence 7777666542 2211 1 123344555555555555555432 45666777777777
Q ss_pred CCCCCCcCcccCCCCCCccEEEeeCCCCCCcc-cccCCcccccccccccccccccch-hhhCCCCccEecccccc
Q 012450 133 DCKSLKSLKLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 133 ~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~ 205 (463)
+|..-+.-+..+.-.++|+.|+|++|++++++ ..+..+..|++|+|++|++..+.+ .+..+++|+.|||++|.
T Consensus 302 ~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 302 YNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred hhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 76644444445666677777777777777754 344555566666666665554432 33445555555555553
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.62 E-value=2.8e-15 Score=161.60 Aligned_cols=198 Identities=26% Similarity=0.404 Sum_probs=92.0
Q ss_pred CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEee
Q 012450 6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84 (463)
Q Consensus 6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l 84 (463)
+...|++++ ..++.+ |..+. ++|+.|+|++| .++.+|. +. ++|+.|++++|.++.+|..+. .+|+.|++
T Consensus 179 ~~~~L~L~~-~~LtsL--P~~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKI-LGLTTI--PACIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCC-CCcCcC--Ccccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEEC
Confidence 345555555 345555 33332 35555666553 4445554 21 355555555555555554332 34555555
Q ss_pred ecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCC-------------------
Q 012450 85 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFD------------------- 145 (463)
Q Consensus 85 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~------------------- 145 (463)
++|. +..+|..+. .+|+.|++++|.++.+|..+. .+|+.|++++|. ++.+|..+.
T Consensus 249 s~N~-L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 249 SINR-ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPET 322 (754)
T ss_pred cCCc-cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccchhhHHHHHhcCCccccCCcc
Confidence 5543 334554432 345555555555555554332 355555555543 334433221
Q ss_pred CCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCC-CCCCccEeeccC
Q 012450 146 GLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQH 224 (463)
Q Consensus 146 ~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~-l~~~L~~L~i~~ 224 (463)
..++|+.|++++|.++.+|..+ +++|+.|++++|+++.+|..+. ++|+.|+|++|. +..+|. ++.+|+.|++++
T Consensus 323 l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~ 397 (754)
T PRK15370 323 LPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNA-LTNLPENLPAALQIMQASR 397 (754)
T ss_pred ccccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhhc--CCcCEEECCCCc-CCCCCHhHHHHHHHHhhcc
Confidence 1134444444444444444332 2345555555555544444331 345555555542 333332 333444455444
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.62 E-value=7.7e-16 Score=165.85 Aligned_cols=187 Identities=26% Similarity=0.402 Sum_probs=128.6
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEe
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 83 (463)
++|+.|+|++ +.++.+ |..+. .+|+.|++++| .++.+|. + .++|+.|+|++|.++.+|..+. .+|+.|+
T Consensus 199 ~~L~~L~Ls~-N~LtsL--P~~l~--~nL~~L~Ls~N-~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDN-NELKSL--PENLQ--GNIKTLYANSN-QLTSIPATL--PDTIQEMELSINRITELPERLP--SALQSLD 268 (754)
T ss_pred cCCcEEEecC-CCCCcC--Chhhc--cCCCEEECCCC-ccccCChhh--hccccEEECcCCccCcCChhHh--CCCCEEE
Confidence 3577888877 466677 44443 57888888775 4666665 3 2467777777777776666543 4667777
Q ss_pred eecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCC-------------------CCCCccEEecCCCCCCCcCcccC
Q 012450 84 LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIE-------------------CLSALCVLDLGDCKSLKSLKLPF 144 (463)
Q Consensus 84 l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~-------------------~l~~L~~L~l~~c~~l~~l~~~l 144 (463)
+++| .+..+|..+. ++|+.|++++|.++.+|..+. ..++|+.|++++|. ++.+|..+
T Consensus 269 Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~l 344 (754)
T PRK15370 269 LFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLPASL 344 (754)
T ss_pred CcCC-ccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCc-cccCChhh
Confidence 7653 4555665442 356666666666655543211 12578888888775 56676544
Q ss_pred CCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCC
Q 012450 145 DGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK 212 (463)
Q Consensus 145 ~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~ 212 (463)
.++|+.|++++|++..+|..+ .++|+.|+|++|+++.+|..+. ..|+.|++++|. +..+|.
T Consensus 345 --~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~ 405 (754)
T PRK15370 345 --PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNN-LVRLPE 405 (754)
T ss_pred --cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCC-cccCch
Confidence 368999999999999888755 4799999999999999998765 379999999984 556664
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=9.7e-15 Score=156.72 Aligned_cols=110 Identities=22% Similarity=0.340 Sum_probs=60.5
Q ss_pred cceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeec
Q 012450 7 LNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 86 (463)
Q Consensus 7 L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~ 86 (463)
-..|+|+++ .++.+ |..+. ++|+.|++.+ +.++.+|.+ +++|++|++++|.++.+|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~-~LtsL--P~~l~--~~L~~L~L~~-N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGES-GLTTL--PDCLP--AHITTLVIPD-NNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCC-CCCcC--Ccchh--cCCCEEEccC-CcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 456677763 56666 44443 3667777776 356666653 46677777777777666642 34566666665
Q ss_pred CCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCC
Q 012450 87 CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDC 134 (463)
Q Consensus 87 c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c 134 (463)
|. +..+|.. .++|+.|++++|.++.+|.. +++|+.|++++|
T Consensus 272 N~-L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N 312 (788)
T PRK15387 272 NP-LTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN 312 (788)
T ss_pred Cc-hhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCC
Confidence 42 4444431 23445555555555555432 244555555554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=2.8e-14 Score=153.26 Aligned_cols=200 Identities=29% Similarity=0.353 Sum_probs=161.7
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEee
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l 84 (463)
++|+.|++.+ +.++.+ |. ..++|++|++++| .++.+|.. .++|+.|++++|.++.+|.. ..+|+.|++
T Consensus 222 ~~L~~L~L~~-N~Lt~L--P~---lp~~Lk~LdLs~N-~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPD-NNLTSL--PA---LPPELRTLEVSGN-QLTSLPVL--PPGLLELSIFSNPLTHLPAL---PSGLCKLWI 289 (788)
T ss_pred cCCCEEEccC-CcCCCC--CC---CCCCCcEEEecCC-ccCcccCc--ccccceeeccCCchhhhhhc---hhhcCEEEC
Confidence 4789999998 678888 44 3589999999995 78888863 57999999999999988863 367889999
Q ss_pred ecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc
Q 012450 85 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP 164 (463)
Q Consensus 85 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p 164 (463)
++| .++.+|. .+++|+.|++++|.++.+|.. ..+|+.|++++|. ++.+|. ...+|+.|+|++|+++.+|
T Consensus 290 s~N-~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~---lp~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 290 FGN-QLTSLPV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLPT---LPSGLQELSVSDNQLASLP 358 (788)
T ss_pred cCC-ccccccc---cccccceeECCCCccccCCCC---cccccccccccCc-cccccc---cccccceEecCCCccCCCC
Confidence 996 5677876 357899999999999998863 3467888999876 666764 2257999999999999988
Q ss_pred cccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCCCCCccEeeccCcccccccccCC
Q 012450 165 ESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLF 235 (463)
Q Consensus 165 ~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c~~L~~l~~~~ 235 (463)
.. .++|+.|++++|.++.+|.. ..+|+.|++++| .+..+|..+++|+.|+++++ .|+.+|...
T Consensus 359 ~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N-~LssIP~l~ 421 (788)
T PRK15387 359 TL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN-RLTSLPVLPSELKELMVSGN-RLTSLPMLP 421 (788)
T ss_pred CC---CcccceehhhccccccCccc---ccccceEEecCC-cccCCCCcccCCCEEEccCC-cCCCCCcch
Confidence 63 46788999999999988864 357999999998 57789988899999999986 477776543
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=1.5e-16 Score=166.73 Aligned_cols=215 Identities=27% Similarity=0.348 Sum_probs=151.2
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEe
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 83 (463)
.+|++++++. +.+..+ |+.+..+.+|+.|++.+| .+..+|. +..+.+|+.|.+..|.++.+|.....++.|++|+
T Consensus 241 ~nl~~~dis~-n~l~~l--p~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISH-NNLSNL--PEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecch-hhhhcc--hHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeee
Confidence 4567777776 566666 577777777777777773 4566666 6677777777777777777777666777777777
Q ss_pred eecCCCCCccchhcC--------------------------CCCCCcEEEEECCCCc-cCCccCCCCCCccEEecCCCCC
Q 012450 84 LGDCKNLKTLPSSLC--------------------------KLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKS 136 (463)
Q Consensus 84 l~~c~~l~~lp~~l~--------------------------~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~ 136 (463)
+..| ++..+|..+. .++.|+.|.+.+|.++ ..-+.+.+..+|+.|+|++|.
T Consensus 317 L~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr- 394 (1081)
T KOG0618|consen 317 LQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR- 394 (1081)
T ss_pred ehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-
Confidence 7764 4454543221 1123444455555554 223345677888888888875
Q ss_pred CCcCccc-CCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccc--cCC-C
Q 012450 137 LKSLKLP-FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQ--SLP-K 212 (463)
Q Consensus 137 l~~l~~~-l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~--~l~-~ 212 (463)
+..+|.. +.++..|+.|+|+||.++.+|..+..++.|++|...+|++..+| .+.+++.|+.+|++.|. |+ .+| .
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~ 472 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPEA 472 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccch-hhhhhhhhh
Confidence 6666653 66778888888888888888888888888888888888888888 78889999999999874 32 223 3
Q ss_pred CC-CCccEeeccCccc
Q 012450 213 LP-CNLYWLDAQHCTT 227 (463)
Q Consensus 213 l~-~~L~~L~i~~c~~ 227 (463)
.| ++|++||++|.+.
T Consensus 473 ~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 473 LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred CCCcccceeeccCCcc
Confidence 56 8999999988653
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=1.7e-14 Score=151.39 Aligned_cols=196 Identities=27% Similarity=0.361 Sum_probs=135.6
Q ss_pred cCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEEC
Q 012450 31 NKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG 110 (463)
Q Consensus 31 ~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 110 (463)
++|+.|..++|... .+-.-....+|++++++.+.++.+|++++.+.+|+.|++.+| .+..+|..+....+|+.|.+..
T Consensus 219 ~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 219 PSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cchheeeeccCcce-eeccccccccceeeecchhhhhcchHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhh
Confidence 34445555554333 111133456777777777777777777777777777777764 3466666666666666666666
Q ss_pred CCCccCCccCCCCCCccEEecCCCCCCCcCc-------------------------------------------------
Q 012450 111 SAIEELPSPIECLSALCVLDLGDCKSLKSLK------------------------------------------------- 141 (463)
Q Consensus 111 ~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~------------------------------------------------- 141 (463)
|.++.+|...+.++.|++|++..|. +..+|
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 6666666666666666666665543 22211
Q ss_pred -ccCCCCCCccEEEeeCCCCCCcccc-cCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCC--CCCc
Q 012450 142 -LPFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNL 217 (463)
Q Consensus 142 -~~l~~l~~L~~L~L~~~~l~~~p~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l--~~~L 217 (463)
+.+.+..+|+.|+|++|.+.++|.. +.++..|++|+||||+++.+|..+..+..|+.|....| .+..+|++ .+.|
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL 454 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQL 454 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcc
Confidence 1245678899999999999998864 56899999999999999999999999999999988776 46677764 4678
Q ss_pred cEeeccCccccccc
Q 012450 218 YWLDAQHCTTLESL 231 (463)
Q Consensus 218 ~~L~i~~c~~L~~l 231 (463)
+.+|+ +|..|+.+
T Consensus 455 ~~lDl-S~N~L~~~ 467 (1081)
T KOG0618|consen 455 KVLDL-SCNNLSEV 467 (1081)
T ss_pred eEEec-ccchhhhh
Confidence 99998 44555544
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=2e-14 Score=141.68 Aligned_cols=202 Identities=24% Similarity=0.213 Sum_probs=115.8
Q ss_pred cccccCCcCccEEeeecCCCC----CCCCC-CCCCCCccEEEeeccCCCc-------cCccccCCCCccEEeeecCCCCC
Q 012450 24 PSLIQHLNKLVILNLSGCSKL----KSLPE-ISSAGNIEKILLDGTAIEE-------LPSSIGCLSRLLELNLGDCKNLK 91 (463)
Q Consensus 24 ~~~~~~l~~L~~L~L~~c~~l----~~lp~-l~~l~~L~~L~L~~~~i~~-------lp~~i~~l~~L~~L~l~~c~~l~ 91 (463)
...+..+.+|+.|++++|... ..++. +...++|++|+++++.+.. ++..+..+++|+.|++++|....
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 344555666777777775421 12333 4556667777777665542 22345556677777777765544
Q ss_pred ccchhcCCCC---CCcEEEEECCCCc-----cCCccCCCC-CCccEEecCCCCCCC----cCcccCCCCCCccEEEeeCC
Q 012450 92 TLPSSLCKLK---SLEEICLTGSAIE-----ELPSPIECL-SALCVLDLGDCKSLK----SLKLPFDGLYSLTYLYLTDC 158 (463)
Q Consensus 92 ~lp~~l~~l~---~L~~L~l~~~~i~-----~lp~~i~~l-~~L~~L~l~~c~~l~----~l~~~l~~l~~L~~L~L~~~ 158 (463)
..+..+..+. +|++|++++|.+. .+...+..+ ++|+.|++++|.... .+...+..+++|++|++++|
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 4444333333 3777777777665 122334455 677777777776321 22333455567777777777
Q ss_pred CCCC-----cccccCCccccccccccccccc-----ccchhhhCCCCccEeccccccccc----c----CCCCCCCccEe
Q 012450 159 AITE-----LPESLGLLSSLEELYLERNNFE-----RIPESIIRLSKLSSLLVSYCERLQ----S----LPKLPCNLYWL 220 (463)
Q Consensus 159 ~l~~-----~p~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~c~~l~----~----l~~l~~~L~~L 220 (463)
.+.+ ++..+..+++|++|++++|.++ .+...+..+++|+.|++++|+.-. . ++...+.|+.|
T Consensus 176 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L 255 (319)
T cd00116 176 GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255 (319)
T ss_pred CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence 7663 3333445567777777777664 234455667777777777764211 1 11112567777
Q ss_pred eccCc
Q 012450 221 DAQHC 225 (463)
Q Consensus 221 ~i~~c 225 (463)
++.+|
T Consensus 256 ~l~~n 260 (319)
T cd00116 256 SLSCN 260 (319)
T ss_pred EccCC
Confidence 77776
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.36 E-value=1.1e-13 Score=136.35 Aligned_cols=220 Identities=22% Similarity=0.187 Sum_probs=154.5
Q ss_pred CCCCcceeecccccCc----CCCCCcccccCCcCccEEeeecCCCCC------CCCC-CCCCCCccEEEeeccCCC-ccC
Q 012450 3 HHGKLNQIIMAACNIF----TKTPNPSLIQHLNKLVILNLSGCSKLK------SLPE-ISSAGNIEKILLDGTAIE-ELP 70 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l----~~~~~~~~~~~l~~L~~L~L~~c~~l~------~lp~-l~~l~~L~~L~L~~~~i~-~lp 70 (463)
.+++|++|++++|... ..+ +..+...++|+.|+++++..-+ .++. +..+++|++|++++|.+. ..+
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i--~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKAL--ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHH--HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 3567999999997642 223 4566778889999999864331 1122 566889999999999886 334
Q ss_pred ccccCCC---CccEEeeecCCCCC----ccchhcCCC-CCCcEEEEECCCCc-----cCCccCCCCCCccEEecCCCCCC
Q 012450 71 SSIGCLS---RLLELNLGDCKNLK----TLPSSLCKL-KSLEEICLTGSAIE-----ELPSPIECLSALCVLDLGDCKSL 137 (463)
Q Consensus 71 ~~i~~l~---~L~~L~l~~c~~l~----~lp~~l~~l-~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~l 137 (463)
..+..+. +|++|++++|.... .+...+..+ ++|+.|++++|.++ .++..+..+++|++|++++|..-
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 3344444 49999999986442 233456667 89999999999987 34455677789999999998733
Q ss_pred C----cCcccCCCCCCccEEEeeCCCCCC-----cccccCCcccccccccccccccc--cchhhh----CCCCccEeccc
Q 012450 138 K----SLKLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFER--IPESII----RLSKLSSLLVS 202 (463)
Q Consensus 138 ~----~l~~~l~~l~~L~~L~L~~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~~--lp~~l~----~l~~L~~L~L~ 202 (463)
. .++..+..+++|+.|++++|.+.+ +...+..+++|++|++++|.++. +..... ..+.|++|+++
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence 2 233334556799999999998874 44567788999999999998863 221112 24799999999
Q ss_pred ccccc--------ccCCCCCCCccEeeccCc
Q 012450 203 YCERL--------QSLPKLPCNLYWLDAQHC 225 (463)
Q Consensus 203 ~c~~l--------~~l~~l~~~L~~L~i~~c 225 (463)
+|..- +.++.. ++|++++++++
T Consensus 259 ~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N 288 (319)
T cd00116 259 CNDITDDGAKDLAEVLAEK-ESLLELDLRGN 288 (319)
T ss_pred CCCCCcHHHHHHHHHHhcC-CCccEEECCCC
Confidence 99532 122333 57888888764
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.29 E-value=7.4e-13 Score=145.10 Aligned_cols=228 Identities=28% Similarity=0.370 Sum_probs=163.4
Q ss_pred CCCCcceeecccccC-cCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCcc
Q 012450 3 HHGKLNQIIMAACNI-FTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLL 80 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~-l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 80 (463)
.+++|++|-+.++.. +..++ ...+..++.|++|||++|..+..+|. ++.+-+|++|+++++.++.+|.++++|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is-~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEIS-GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcC-HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 467889999988653 56653 44588899999999999999999999 9999999999999999999999999999999
Q ss_pred EEeeecCCCCCccchhcCCCCCCcEEEEECCCCc---cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCcc----EE
Q 012450 81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE---ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLT----YL 153 (463)
Q Consensus 81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~----~L 153 (463)
+|++..+..+..+|..+..+.+|++|.+...... ..-..+.++.+|+.+....... .+-..+..+..|. .+
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSL 699 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhh
Confidence 9999998888888877778999999999876532 1223345666666666654332 1111122222222 33
Q ss_pred EeeCCCCCCcccccCCcccccccccccccccccch-h-----hhC-CCCccEeccccccccccCC--CCCCCccEeeccC
Q 012450 154 YLTDCAITELPESLGLLSSLEELYLERNNFERIPE-S-----IIR-LSKLSSLLVSYCERLQSLP--KLPCNLYWLDAQH 224 (463)
Q Consensus 154 ~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~-----l~~-l~~L~~L~L~~c~~l~~l~--~l~~~L~~L~i~~ 224 (463)
.+.++.....+..+..+.+|+.|.+.+|.+..... . ... ++++..+.+.+|..++.+. ..+++|+.|.+.+
T Consensus 700 ~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~ 779 (889)
T KOG4658|consen 700 SIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVS 779 (889)
T ss_pred hhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEec
Confidence 33444444556667788888888888887643221 1 111 4466677777777777665 3578888888888
Q ss_pred ccccccccc
Q 012450 225 CTTLESLSG 233 (463)
Q Consensus 225 c~~L~~l~~ 233 (463)
|..++.+..
T Consensus 780 ~~~~e~~i~ 788 (889)
T KOG4658|consen 780 CRLLEDIIP 788 (889)
T ss_pred ccccccCCC
Confidence 887776543
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=1.1e-13 Score=138.75 Aligned_cols=209 Identities=26% Similarity=0.414 Sum_probs=167.0
Q ss_pred eecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCC
Q 012450 10 IIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCK 88 (463)
Q Consensus 10 L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~ 88 (463)
|.|++ ..+++.+....-..+.--...||+. +....+|. +..+..|+.+.|..|.+..+|..+.++..|.+|+++.|
T Consensus 55 l~Ls~-rrlk~fpr~a~~~~ltdt~~aDlsr-NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N- 131 (722)
T KOG0532|consen 55 LLLSG-RRLKEFPRGAASYDLTDTVFADLSR-NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN- 131 (722)
T ss_pred ccccc-chhhcCCCccccccccchhhhhccc-cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-
Confidence 45555 5566664333333455556677887 45677777 77788899999999999999999999999999999985
Q ss_pred CCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccC
Q 012450 89 NLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLG 168 (463)
Q Consensus 89 ~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~ 168 (463)
.+..+|..++.++ |+.|-+++|+++.+|..++.+..|..|+.+.|. +..+|..+.++.+|+.|.+..|++..+|..+.
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~ 209 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC 209 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh
Confidence 5778888888775 899999999999999999989999999999876 67788889999999999999999999998888
Q ss_pred CcccccccccccccccccchhhhCCCCccEeccccccccccCCC-C-----CCCccEeeccCc
Q 012450 169 LLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK-L-----PCNLYWLDAQHC 225 (463)
Q Consensus 169 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~-l-----~~~L~~L~i~~c 225 (463)
.+ .|..||+++|++..||-.+.+|+.|++|.|.+|+ |++=|. + ---.++|++.-|
T Consensus 210 ~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 210 SL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CC-ceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 44 5889999999999999999999999999999885 444332 1 112467777777
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.27 E-value=3e-13 Score=130.18 Aligned_cols=204 Identities=25% Similarity=0.309 Sum_probs=145.4
Q ss_pred CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeec-cCCCccCcc-ccCCCCccE
Q 012450 6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDG-TAIEELPSS-IGCLSRLLE 81 (463)
Q Consensus 6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~-~~i~~lp~~-i~~l~~L~~ 81 (463)
.-.+|+|.. +.++.+| +..|+.+++|+.|||++| .+..+.. +..+++|..|.+.+ |+|+.+|.. ++.|..|+.
T Consensus 68 ~tveirLdq-N~I~~iP-~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQ-NQISSIP-PGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred cceEEEecc-CCcccCC-hhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 345677777 6788886 677888888888888884 5555543 77888888877777 788888876 677888888
Q ss_pred EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCCc---------------------
Q 012450 82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKS--------------------- 139 (463)
Q Consensus 82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~--------------------- 139 (463)
|.+.-|..--...+.+..+++|..|.+..|.+..++. .+..+.+++.+.+..+...-.
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 8877654333344567788888888888888887776 667777777776655441111
Q ss_pred --------------------------C--------------c-ccCCCCCCccEEEeeCCCCCCc-ccccCCcccccccc
Q 012450 140 --------------------------L--------------K-LPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELY 177 (463)
Q Consensus 140 --------------------------l--------------~-~~l~~l~~L~~L~L~~~~l~~~-p~~l~~l~~L~~L~ 177 (463)
+ | ..+.++++|++|+|++|+++.+ +.++.....+++|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 0 0 0145678888888888888884 45677888888888
Q ss_pred cccccccccc-hhhhCCCCccEeccccccccccCCC
Q 012450 178 LERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPK 212 (463)
Q Consensus 178 Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~~ 212 (463)
|..|++..+. ..+.++..|+.|+|++|+.-.--|.
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence 8888887655 3567788888888888754333333
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.24 E-value=5.6e-12 Score=128.40 Aligned_cols=171 Identities=35% Similarity=0.490 Sum_probs=78.1
Q ss_pred CcCccEEeeecCCCCCCCCC-CCCCC-CccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEE
Q 012450 30 LNKLVILNLSGCSKLKSLPE-ISSAG-NIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEIC 107 (463)
Q Consensus 30 l~~L~~L~L~~c~~l~~lp~-l~~l~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 107 (463)
++.++.|++.+ ..+.+++. ...+. +|+.|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+.|+
T Consensus 115 ~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCC-cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhee
Confidence 34444444444 33444444 33332 455555555555544444445555555555443 2344444333444555555
Q ss_pred EECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccc
Q 012450 108 LTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP 187 (463)
Q Consensus 108 l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp 187 (463)
+++|.+..+|..+....+|.+|.++++... ..+..+.++..+..|.+.++++..++..++.+++|+.|++++|.++.++
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccc
Confidence 555555555444444444555555444311 1222244444444444444444444444444444555555555544444
Q ss_pred hhhhCCCCccEeccccc
Q 012450 188 ESIIRLSKLSSLLVSYC 204 (463)
Q Consensus 188 ~~l~~l~~L~~L~L~~c 204 (463)
. +..+.+|+.|+++++
T Consensus 272 ~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 272 S-LGSLTNLRELDLSGN 287 (394)
T ss_pred c-ccccCccCEEeccCc
Confidence 3 444444555555444
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.13 E-value=1.3e-12 Score=125.97 Aligned_cols=202 Identities=23% Similarity=0.329 Sum_probs=154.1
Q ss_pred CCCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCC
Q 012450 1 MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLS 77 (463)
Q Consensus 1 l~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~ 77 (463)
++.+++|++|||++ +.++.+. |..|.+++.|..|-+.++++++++|. ++.+..|+.|.+.-|++.-++.. +..++
T Consensus 87 F~~l~~LRrLdLS~-N~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~ 164 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSK-NNISFIA-PDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP 164 (498)
T ss_pred ccchhhhceecccc-cchhhcC-hHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence 36789999999999 6777775 88999999999999999899999998 88888888888888888755443 67788
Q ss_pred CccEEeeecCCCCCccch-hcCCCCCCcEEEEECCC--------------------------------------------
Q 012450 78 RLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGSA-------------------------------------------- 112 (463)
Q Consensus 78 ~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~-------------------------------------------- 112 (463)
+|..|.+.++ ....++. .+..+.+++.+.+..|.
T Consensus 165 ~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~k 243 (498)
T KOG4237|consen 165 SLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARK 243 (498)
T ss_pred hcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhh
Confidence 8888888774 3444544 45555555555544311
Q ss_pred ----CccCC---------c------cCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc-cccCCccc
Q 012450 113 ----IEELP---------S------PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP-ESLGLLSS 172 (463)
Q Consensus 113 ----i~~lp---------~------~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p-~~l~~l~~ 172 (463)
.+.+| . -+..+++|+.|++++|..-..-+..+.++..++.|.|..|++..+. ..+.++..
T Consensus 244 f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~ 323 (498)
T KOG4237|consen 244 FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSG 323 (498)
T ss_pred hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccc
Confidence 01111 1 2467899999999998855555667889999999999999988753 34678999
Q ss_pred cccccccccccccc-chhhhCCCCccEecccccc
Q 012450 173 LEELYLERNNFERI-PESIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 173 L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~ 205 (463)
|+.|+|.+|+++.+ |..+..+.+|.+|.+-.|+
T Consensus 324 L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 324 LKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 99999999999854 5677888899999887664
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=2.4e-11 Score=123.77 Aligned_cols=183 Identities=31% Similarity=0.417 Sum_probs=156.4
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCc-CccEEeeecCCCCCCCC-CCCCCCCccEEEeeccCCCccCccccCCCCcc
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLN-KLVILNLSGCSKLKSLP-EISSAGNIEKILLDGTAIEELPSSIGCLSRLL 80 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~-~L~~L~L~~c~~l~~lp-~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 80 (463)
..++++.|++.+ +.++++ +.....+. +|+.|++++ +.+..+| .+..+++|+.|++++|.+..+|...+.+++|+
T Consensus 114 ~~~~l~~L~l~~-n~i~~i--~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 114 ELTNLTSLDLDN-NNITDI--PPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred cccceeEEecCC-cccccC--ccccccchhhcccccccc-cchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 346788999988 788888 66677774 999999999 5788886 49999999999999999999999877899999
Q ss_pred EEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCC
Q 012450 81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAI 160 (463)
Q Consensus 81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l 160 (463)
.|+++++ .+..+|..+..+..|++|.+++|.+...+..+..+.++..|.+.++. +..++..+..+++|+.|++++|.+
T Consensus 190 ~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 190 NLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred heeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccchhccccccceeccccccc
Confidence 9999995 67888887767777999999999888888888999999999977765 555566688899999999999999
Q ss_pred CCcccccCCcccccccccccccccccchhhhC
Q 012450 161 TELPESLGLLSSLEELYLERNNFERIPESIIR 192 (463)
Q Consensus 161 ~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~ 192 (463)
++++. ++.+.+|+.|+++++.+..++.....
T Consensus 268 ~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 268 SSISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred ccccc-ccccCccCEEeccCccccccchhhhc
Confidence 99887 89999999999999998766544433
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=9.4e-12 Score=116.08 Aligned_cols=125 Identities=25% Similarity=0.224 Sum_probs=76.4
Q ss_pred CCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEee
Q 012450 77 SRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLT 156 (463)
Q Consensus 77 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~ 156 (463)
+.|++|++++| .++.+.+++.-+|.++.|+++.|.+..+.. ++.+.+|+.||+++|. +..+...-.++.+.+.|.|+
T Consensus 284 q~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehh
Confidence 45666666663 345555555566666667776666666644 5666666777776654 44444333455566667777
Q ss_pred CCCCCCcccccCCcccccccccccccccccc--hhhhCCCCccEecccccc
Q 012450 157 DCAITELPESLGLLSSLEELYLERNNFERIP--ESIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 157 ~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~c~ 205 (463)
+|.+.++ +.++.+-+|..||+++|++..+. ..|+++|.|+.|.+.+|+
T Consensus 361 ~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 361 QNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 6666554 24556666677777777665433 356667777777776664
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=2.5e-12 Score=129.07 Aligned_cols=190 Identities=23% Similarity=0.328 Sum_probs=165.5
Q ss_pred ceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEeeec
Q 012450 8 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGD 86 (463)
Q Consensus 8 ~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~ 86 (463)
...||+. +.+.++ |..+..+-.|+.+.|.. +.+..+|. +..+..|+.|+|+.|.+..+|..+..|+ |+.|.+++
T Consensus 78 ~~aDlsr-NR~~el--p~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSR-NRFSEL--PEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhccc-cccccC--chHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 4567777 667888 78888899999999998 46777777 9999999999999999999999998887 99999998
Q ss_pred CCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccc
Q 012450 87 CKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPES 166 (463)
Q Consensus 87 c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~ 166 (463)
++++.+|..++.+..|..|+.+.|.+..+|+.++.+.+|+.|.+..|. +..+|..+..+ .|..||++.|++..+|-.
T Consensus 153 -Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 153 -NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCNKISYLPVD 229 (722)
T ss_pred -CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccCceeecchh
Confidence 578999999999999999999999999999999999999999999876 66677767644 589999999999999999
Q ss_pred cCCcccccccccccccccccchhhh---CCCCccEecccccc
Q 012450 167 LGLLSSLEELYLERNNFERIPESII---RLSKLSSLLVSYCE 205 (463)
Q Consensus 167 l~~l~~L~~L~Ls~n~l~~lp~~l~---~l~~L~~L~L~~c~ 205 (463)
+.++..|++|-|.+|.+++-|..|. +..-.++|++.-|+
T Consensus 230 fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 9999999999999999998886553 34456788888884
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.8e-11 Score=119.53 Aligned_cols=176 Identities=19% Similarity=0.201 Sum_probs=86.8
Q ss_pred CCcCccEEeeecCCCCCCCC---CCCCCCCccEEEeeccCCC---ccCccccCCCCccEEeeecCCCCCccchh-cCCCC
Q 012450 29 HLNKLVILNLSGCSKLKSLP---EISSAGNIEKILLDGTAIE---ELPSSIGCLSRLLELNLGDCKNLKTLPSS-LCKLK 101 (463)
Q Consensus 29 ~l~~L~~L~L~~c~~l~~lp---~l~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~l~~c~~l~~lp~~-l~~l~ 101 (463)
++++|+.+.|.+| .+...+ ....+++++.|+|++|-+. .+-..+..|++|+.|+++.|...--..+. -..++
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4555555555553 333333 1445566666666665433 22223445566666666654322111111 11345
Q ss_pred CCcEEEEECCCCc--cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc--cccCCcccccccc
Q 012450 102 SLEEICLTGSAIE--ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP--ESLGLLSSLEELY 177 (463)
Q Consensus 102 ~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p--~~l~~l~~L~~L~ 177 (463)
+|+.|.+++|+++ .+...+..+++|..|++.+|..+..-......+..|+.|+|++|++.+++ ...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 5666666666655 23333445566666666665422222222333455666666666665544 3455666666666
Q ss_pred cccccccc--cchh-----hhCCCCccEecccccc
Q 012450 178 LERNNFER--IPES-----IIRLSKLSSLLVSYCE 205 (463)
Q Consensus 178 Ls~n~l~~--lp~~-----l~~l~~L~~L~L~~c~ 205 (463)
++.|.+.+ +|+. ...+++|++|++..|+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 66665542 2222 2345666666666654
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=1.5e-10 Score=108.18 Aligned_cols=124 Identities=21% Similarity=0.240 Sum_probs=93.2
Q ss_pred CCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccc
Q 012450 98 CKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELY 177 (463)
Q Consensus 98 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~ 177 (463)
-.++.|++|++++|.|+.+..++.-.+.++.|+++.|.. ..+.. +..+++|+.|+|++|.++++..|-..+.+++.|.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i-~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI-RTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccce-eeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 345678888999999988888888888899999988774 33333 7778888999999998888777777788888899
Q ss_pred cccccccccchhhhCCCCccEecccccc-----ccccCCCCCCCccEeeccCc
Q 012450 178 LERNNFERIPESIIRLSKLSSLLVSYCE-----RLQSLPKLPCNLYWLDAQHC 225 (463)
Q Consensus 178 Ls~n~l~~lp~~l~~l~~L~~L~L~~c~-----~l~~l~~l~~~L~~L~i~~c 225 (463)
|++|.+.++. .+.++-+|..||+++|. .++.|..+| .|+.+.+.+.
T Consensus 359 La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~N 409 (490)
T KOG1259|consen 359 LAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGN 409 (490)
T ss_pred hhhhhHhhhh-hhHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCC
Confidence 9998888776 67888888889888875 233444444 3455555443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1e-10 Score=114.25 Aligned_cols=200 Identities=21% Similarity=0.209 Sum_probs=146.0
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC----CCCCCCccEEEeeccCCCccCcc--ccCC
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE----ISSAGNIEKILLDGTAIEELPSS--IGCL 76 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~----l~~l~~L~~L~L~~~~i~~lp~~--i~~l 76 (463)
++.+|+++.|.+| .+...+.......|++++.|||++| .+..+-. ...+|+|+.|+|+.|.+....++ -..+
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 5678888999884 3444421246778999999999995 3333322 56799999999999988744333 2467
Q ss_pred CCccEEeeecCCCCC-ccchhcCCCCCCcEEEEECCC-CccCCccCCCCCCccEEecCCCCCCCcCc--ccCCCCCCccE
Q 012450 77 SRLLELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSA-IEELPSPIECLSALCVLDLGDCKSLKSLK--LPFDGLYSLTY 152 (463)
Q Consensus 77 ~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~c~~l~~l~--~~l~~l~~L~~ 152 (463)
+.|+.|.++.|.... .+...+..+|+|+.|.+.+|. +..-......+..|+.|+|++|..+. ++ ...+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence 899999999996542 233445679999999999984 33323344567889999999988554 33 23678899999
Q ss_pred EEeeCCCCCC--cccc-----cCCcccccccccccccccccc--hhhhCCCCccEecccccc
Q 012450 153 LYLTDCAITE--LPES-----LGLLSSLEELYLERNNFERIP--ESIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 153 L~L~~~~l~~--~p~~-----l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~c~ 205 (463)
|+++.|.+.+ +|+. ...+++|+.|++..|++..++ ..+..+++|+.|.+..+.
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 9999999987 4443 467899999999999997665 355667778888776653
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=7.1e-10 Score=98.84 Aligned_cols=61 Identities=33% Similarity=0.434 Sum_probs=15.0
Q ss_pred CCCCCccEEEeeCCCCCCccccc-CCcccccccccccccccccc--hhhhCCCCccEecccccc
Q 012450 145 DGLYSLTYLYLTDCAITELPESL-GLLSSLEELYLERNNFERIP--ESIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 145 ~~l~~L~~L~L~~~~l~~~p~~l-~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~c~ 205 (463)
..++.|+.|++++|.++++...+ ..+++|++|++++|++..+. ..+..+++|+.|++.+|+
T Consensus 61 ~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 61 PGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp ---TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred cChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 33444444444444444433222 13444444444444443221 233344444444444443
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=5.9e-10 Score=99.35 Aligned_cols=136 Identities=29% Similarity=0.353 Sum_probs=52.6
Q ss_pred ccCCCccCccccCCCCccEEeeecCCCCCccchhcC-CCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCc
Q 012450 63 GTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLC-KLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLK 141 (463)
Q Consensus 63 ~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~-~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~ 141 (463)
.+.|+..+. +.+..++++|+|++|. +..+ +.++ .+.+|+.|++++|.|+.+. .+..++.|+.|++++|. ++.+.
T Consensus 6 ~~~i~~~~~-~~n~~~~~~L~L~~n~-I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~ 80 (175)
T PF14580_consen 6 ANMIEQIAQ-YNNPVKLRELNLRGNQ-ISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSIS 80 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-C
T ss_pred ccccccccc-cccccccccccccccc-cccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccc
Confidence 344555554 4566789999999964 4444 3455 5889999999999999886 57889999999999987 55665
Q ss_pred ccC-CCCCCccEEEeeCCCCCCcc--cccCCcccccccccccccccccc----hhhhCCCCccEecccc
Q 012450 142 LPF-DGLYSLTYLYLTDCAITELP--ESLGLLSSLEELYLERNNFERIP----ESIIRLSKLSSLLVSY 203 (463)
Q Consensus 142 ~~l-~~l~~L~~L~L~~~~l~~~p--~~l~~l~~L~~L~Ls~n~l~~lp----~~l~~l~~L~~L~L~~ 203 (463)
..+ ..+++|+.|++++|++.++- ..+..+++|+.|+|.+|.++..+ ..+..+|+|+.||-..
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 434 36899999999999988742 45678999999999999886443 3456677777776554
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.88 E-value=1.7e-09 Score=118.96 Aligned_cols=129 Identities=27% Similarity=0.332 Sum_probs=95.6
Q ss_pred CcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccC--CCccCcc-ccCCCCccEEeeecCCCCCccchhcCCCCCCcEE
Q 012450 30 LNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTA--IEELPSS-IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEI 106 (463)
Q Consensus 30 l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~--i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 106 (463)
....+.+.+.+ +.+..++.-...++|+.|-+.++. +..++.. +..++.|+.||+++|..+..+|+.|+.+-+|+.|
T Consensus 522 ~~~~rr~s~~~-~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 522 WNSVRRMSLMN-NKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hhheeEEEEec-cchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 34556666655 445555554455578888887774 5555554 5678888888888888888888888888888888
Q ss_pred EEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCC
Q 012450 107 CLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCA 159 (463)
Q Consensus 107 ~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~ 159 (463)
+++++.+..+|..++++..|.+|++..+..+..++.....+++|++|.+....
T Consensus 601 ~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 88888888888888888888888888877777776666668888888876654
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.74 E-value=2.6e-08 Score=99.30 Aligned_cols=162 Identities=22% Similarity=0.245 Sum_probs=104.3
Q ss_pred ccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECC-CCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCcc
Q 012450 73 IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGS-AIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLT 151 (463)
Q Consensus 73 i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~ 151 (463)
+..+.++..|++++| .++.+|. -..+|++|.++++ .++.+|..+ ..+|++|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 445788999999998 7888883 2446999999874 556777654 36899999999987877764 577
Q ss_pred EEEeeCCCCCCcccccCCcccccccccccccc---cccchhhhCCCCccEeccccccccccCCCCCCCccEeeccCc--c
Q 012450 152 YLYLTDCAITELPESLGLLSSLEELYLERNNF---ERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHC--T 226 (463)
Q Consensus 152 ~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l---~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c--~ 226 (463)
.|++..+....++. -.++|+.|.+.+++. ..+|.. -.++|+.|++++|..+..-+.+|.+|+.|++..+ .
T Consensus 116 ~L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~~ 190 (426)
T PRK15386 116 SLEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQKT 190 (426)
T ss_pred eEEeCCCCCccccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccccccCcEEEecccccc
Confidence 78887665443221 123577777755432 122211 1258999999999866543458999999998653 4
Q ss_pred cccccccCCCCceeEEEeecCccchHH
Q 012450 227 TLESLSGLFSSYKCVFFYLNENFKLDR 253 (463)
Q Consensus 227 ~L~~l~~~~~~~~~~~~~~~~c~~l~~ 253 (463)
.++.....++..- .+.+.+ |.+++.
T Consensus 191 sLeI~~~sLP~nl-~L~f~n-~lkL~~ 215 (426)
T PRK15386 191 TWNISFEGFPDGL-DIDLQN-SVLLSP 215 (426)
T ss_pred cccCccccccccc-Eechhh-hcccCH
Confidence 4433333332211 233445 777654
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.69 E-value=5e-08 Score=97.34 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=25.3
Q ss_pred ccccccccccccccccchhhhCCCCccEecccccc--ccc-cCCCCCCCccEeeccCccc
Q 012450 171 SSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE--RLQ-SLPKLPCNLYWLDAQHCTT 227 (463)
Q Consensus 171 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~--~l~-~l~~l~~~L~~L~i~~c~~ 227 (463)
++|++|++++|....+|..+. .+|+.|.++.+. .+. ....+|+++ .|++.+|-.
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVL 212 (426)
T ss_pred CcccEEEecCCCcccCccccc--ccCcEEEecccccccccCccccccccc-Eechhhhcc
Confidence 455666665555444343222 356666655432 111 112345555 666666533
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.61 E-value=5.5e-09 Score=107.07 Aligned_cols=192 Identities=29% Similarity=0.363 Sum_probs=128.1
Q ss_pred CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450 4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 82 (463)
+..++.+.+.. +.++++ ...+..+.+|+.|++.+ +.+..+.. +..+++|++|++++|.|+.+.. +..++.|+.|
T Consensus 71 l~~l~~l~l~~-n~i~~~--~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQ-NLIAKI--LNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccch-hhhhhh--hcccccccceeeeeccc-cchhhcccchhhhhcchheeccccccccccc-hhhccchhhh
Confidence 44556666665 445553 34577788888888887 56777777 7888888888888888887754 5677778888
Q ss_pred eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCC
Q 012450 83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT 161 (463)
Q Consensus 83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~ 161 (463)
++.+|. +..+. .+..+++|+.+++++|.+..+... ...+.+|+.+.+.++.... +. .+..+..+..+++..+.++
T Consensus 146 ~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~-i~-~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 146 NLSGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE-IE-GLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eeccCc-chhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc-cc-chHHHHHHHHhhcccccce
Confidence 888853 44443 355588888888888888877654 4677888888888776332 21 1333344445566666665
Q ss_pred CcccccCCccc--ccccccccccccccchhhhCCCCccEecccccc
Q 012450 162 ELPESLGLLSS--LEELYLERNNFERIPESIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 162 ~~p~~l~~l~~--L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~ 205 (463)
.+- .+..+.. |+.+++++|.+..++..+..+..+..|++..++
T Consensus 222 ~~~-~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 222 KLE-GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred ecc-CcccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 532 1223333 777888888777665566667777777777653
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.58 E-value=6e-09 Score=106.81 Aligned_cols=170 Identities=28% Similarity=0.338 Sum_probs=100.1
Q ss_pred CCcCccEEeeecCCCCCC-CCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEE
Q 012450 29 HLNKLVILNLSGCSKLKS-LPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEIC 107 (463)
Q Consensus 29 ~l~~L~~L~L~~c~~l~~-lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 107 (463)
.+..++.+++..+ .+.. ...+..+.+|+.|++.+|.|+.+...+..+++|++|++++| .++.+. .+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-cccccc-chhhccchhhhe
Confidence 3455555555553 3333 22366677777777777777766655666777777777774 344442 355566677777
Q ss_pred EECCCCccCCccCCCCCCccEEecCCCCCCCcCccc-CCCCCCccEEEeeCCCCCCcccccCCccccccccccccccccc
Q 012450 108 LTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLP-FDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERI 186 (463)
Q Consensus 108 l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~l 186 (463)
+++|.|+.+. .+..+..|+.+++++|.. ..+... ...+.+|+.+.+.+|.+..+. .+..+..+..+++..|.++.+
T Consensus 147 l~~N~i~~~~-~~~~l~~L~~l~l~~n~i-~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 147 LSGNLISDIS-GLESLKSLKLLDLSYNRI-VDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred eccCcchhcc-CCccchhhhcccCCcchh-hhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceec
Confidence 7777777664 344467777777777653 333321 356667777777777666542 234444555556666666543
Q ss_pred chhhhCCCC--ccEecccccc
Q 012450 187 PESIIRLSK--LSSLLVSYCE 205 (463)
Q Consensus 187 p~~l~~l~~--L~~L~L~~c~ 205 (463)
- .+..+.. |+.++++++.
T Consensus 224 ~-~l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 224 E-GLNELVMLHLRELYLSGNR 243 (414)
T ss_pred c-CcccchhHHHHHHhcccCc
Confidence 2 1222232 6677777664
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.57 E-value=9.7e-09 Score=98.13 Aligned_cols=180 Identities=18% Similarity=0.166 Sum_probs=79.2
Q ss_pred CCCCcceeecccccCcCCCC--CcccccCCcCccEEeeecCCCCC----CCCC--------CCCCCCccEEEeeccCCC-
Q 012450 3 HHGKLNQIIMAACNIFTKTP--NPSLIQHLNKLVILNLSGCSKLK----SLPE--------ISSAGNIEKILLDGTAIE- 67 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~--~~~~~~~l~~L~~L~L~~c~~l~----~lp~--------l~~l~~L~~L~L~~~~i~- 67 (463)
.+..+++|+|+++..-++.. ....+.+.++|+..++++ -..+ .+|. +-.+++|++|+|+.|.+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 34567777777754333220 023344455666666554 1211 1221 223456666666666544
Q ss_pred -c---cCccccCCCCccEEeeecCCCCCcc-------------chhcCCCCCCcEEEEECCCCccCC-----ccCCCCCC
Q 012450 68 -E---LPSSIGCLSRLLELNLGDCKNLKTL-------------PSSLCKLKSLEEICLTGSAIEELP-----SPIECLSA 125 (463)
Q Consensus 68 -~---lp~~i~~l~~L~~L~l~~c~~l~~l-------------p~~l~~l~~L~~L~l~~~~i~~lp-----~~i~~l~~ 125 (463)
. +-.-+..+..|++|.|.+|..-..- ..-+..-+.|+.+...+|++..-+ ..+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 1 1122444566666666655322110 111233445555555555544221 12333444
Q ss_pred ccEEecCCCCCCCc----CcccCCCCCCccEEEeeCCCCCC-----cccccCCcccccccccccccc
Q 012450 126 LCVLDLGDCKSLKS----LKLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNF 183 (463)
Q Consensus 126 L~~L~l~~c~~l~~----l~~~l~~l~~L~~L~L~~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l 183 (463)
|+.+.+..|..... +...+..+++|+.|+|.+|-++. +...+..+++|+.|++++|.+
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 55555444432111 11123444555555555554432 233344444555555555544
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.53 E-value=1.3e-07 Score=101.54 Aligned_cols=109 Identities=24% Similarity=0.333 Sum_probs=62.4
Q ss_pred CcEEEEECCCCc-cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC-cccccCCccccccccccc
Q 012450 103 LEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLER 180 (463)
Q Consensus 103 L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~ 180 (463)
++.|+|+++.+. .+|..+..+++|+.|++++|.....+|..+..+++|+.|+|++|++.. +|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455566666554 455556666666666666655444555556666666666666666654 555666666666666666
Q ss_pred cccc-ccchhhhCC-CCccEeccccccccccCC
Q 012450 181 NNFE-RIPESIIRL-SKLSSLLVSYCERLQSLP 211 (463)
Q Consensus 181 n~l~-~lp~~l~~l-~~L~~L~L~~c~~l~~l~ 211 (463)
|+++ .+|..+..+ .++..+++.+|..+...|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 6654 455555432 344555555555444433
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.49 E-value=2.3e-09 Score=104.55 Aligned_cols=226 Identities=19% Similarity=0.226 Sum_probs=132.5
Q ss_pred CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC---CCCCCCccEEEeecc-CCCc--cCccccCCCCc
Q 012450 6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE---ISSAGNIEKILLDGT-AIEE--LPSSIGCLSRL 79 (463)
Q Consensus 6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~---l~~l~~L~~L~L~~~-~i~~--lp~~i~~l~~L 79 (463)
.|+.|.+.||.....-+.-....++++++.|.+.+|.++++-.- -..+++|++|++..| .++. +......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46677777776666554345556677777777777766554332 234667777777663 4442 22223456677
Q ss_pred cEEeeecCCCCCc--cchhcCCCCCCcEEEEECCC---------------------------Ccc--CCccCCCCCCccE
Q 012450 80 LELNLGDCKNLKT--LPSSLCKLKSLEEICLTGSA---------------------------IEE--LPSPIECLSALCV 128 (463)
Q Consensus 80 ~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~---------------------------i~~--lp~~i~~l~~L~~ 128 (463)
++|++++|..+.. +-....+++.++.+.+.||. ++. +...-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 7777777665543 11122344445555444421 110 0001124567777
Q ss_pred EecCCCCCCCcCcc--cCCCCCCccEEEeeCCC-CCC--cccccCCccccccccccccccc---ccchhhhCCCCccEec
Q 012450 129 LDLGDCKSLKSLKL--PFDGLYSLTYLYLTDCA-ITE--LPESLGLLSSLEELYLERNNFE---RIPESIIRLSKLSSLL 200 (463)
Q Consensus 129 L~l~~c~~l~~l~~--~l~~l~~L~~L~L~~~~-l~~--~p~~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~ 200 (463)
|+.++|..+++.+. -..+..+|+.|.+++|+ +++ +...-.+++.|+.+++.++... ++-..-.+++.|+.|.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 78777776655332 13456788899998885 333 3333457888999999888642 2444445688999999
Q ss_pred cccccccccCC--------CCCCCccEeeccCccccccc
Q 012450 201 VSYCERLQSLP--------KLPCNLYWLDAQHCTTLESL 231 (463)
Q Consensus 201 L~~c~~l~~l~--------~l~~~L~~L~i~~c~~L~~l 231 (463)
+++|..+++.. .....++.+.+.+|+.++.-
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 99998766541 12245666777777765543
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.43 E-value=4.4e-07 Score=97.61 Aligned_cols=107 Identities=23% Similarity=0.308 Sum_probs=88.6
Q ss_pred CccEEEeeccCCC-ccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCc-cCCccCCCCCCccEEecC
Q 012450 55 NIEKILLDGTAIE-ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLG 132 (463)
Q Consensus 55 ~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~ 132 (463)
.++.|+|+++.++ .+|..++.+++|+.|+|++|.....+|..++.+++|+.|++++|.++ .+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778899998887 77888899999999999998777788888999999999999999987 678889999999999999
Q ss_pred CCCCCCcCcccCCCC-CCccEEEeeCCCCC
Q 012450 133 DCKSLKSLKLPFDGL-YSLTYLYLTDCAIT 161 (463)
Q Consensus 133 ~c~~l~~l~~~l~~l-~~L~~L~L~~~~l~ 161 (463)
+|.....+|..+... .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 988777788766543 45677888887543
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.2e-09 Score=100.43 Aligned_cols=172 Identities=21% Similarity=0.221 Sum_probs=102.6
Q ss_pred CccEEeeecCCCCCC--CCC-CCCCCCccEEEeeccCCC-ccCccccCCCCccEEeeecCCCCCccc--hhcCCCCCCcE
Q 012450 32 KLVILNLSGCSKLKS--LPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSRLLELNLGDCKNLKTLP--SSLCKLKSLEE 105 (463)
Q Consensus 32 ~L~~L~L~~c~~l~~--lp~-l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~ 105 (463)
.|+.|||+. ..++. +-. ++.+.+|+.|.|.|+.+. .+...|..-.+|+.|+++.|+.+++.. -.+.+++.|..
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 467777765 23321 111 455667777777777665 344446666777777777777666543 23556777777
Q ss_pred EEEECCCCcc--CCccCC-CCCCccEEecCCCCCCC---cCcccCCCCCCccEEEeeCCCC-CC-cccccCCcccccccc
Q 012450 106 ICLTGSAIEE--LPSPIE-CLSALCVLDLGDCKSLK---SLKLPFDGLYSLTYLYLTDCAI-TE-LPESLGLLSSLEELY 177 (463)
Q Consensus 106 L~l~~~~i~~--lp~~i~-~l~~L~~L~l~~c~~l~---~l~~~l~~l~~L~~L~L~~~~l-~~-~p~~l~~l~~L~~L~ 177 (463)
|+++.|.+.. +...+. --++|+.|+++||...- .+..-...+++|..|||++|.. +. .-..+..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 7777776541 111111 12467777777764311 1122234677888888888743 32 445567788888888
Q ss_pred ccccccc--ccchhhhCCCCccEeccccc
Q 012450 178 LERNNFE--RIPESIIRLSKLSSLLVSYC 204 (463)
Q Consensus 178 Ls~n~l~--~lp~~l~~l~~L~~L~L~~c 204 (463)
++.|-.- ..--.+...+.|.+|++.+|
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 8888421 11113566788999998887
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=3e-08 Score=94.85 Aligned_cols=202 Identities=21% Similarity=0.241 Sum_probs=143.9
Q ss_pred CCCCCcceeecccccCcC----CCC-----CcccccCCcCccEEeeecCCCCCCCCC-----CCCCCCccEEEeeccCCC
Q 012450 2 QHHGKLNQIIMAACNIFT----KTP-----NPSLIQHLNKLVILNLSGCSKLKSLPE-----ISSAGNIEKILLDGTAIE 67 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~l~----~~~-----~~~~~~~l~~L~~L~L~~c~~l~~lp~-----l~~l~~L~~L~L~~~~i~ 67 (463)
...++|++.++++ -... +++ ....+..+++|++|+||+|-.-...+. +..+..|++|+|.+|.+.
T Consensus 55 ~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 55 ASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred hhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 3456778888775 1111 221 023455778999999999744333332 677999999999999876
Q ss_pred cc--------------CccccCCCCccEEeeecCCCCCc-----cchhcCCCCCCcEEEEECCCCc-----cCCccCCCC
Q 012450 68 EL--------------PSSIGCLSRLLELNLGDCKNLKT-----LPSSLCKLKSLEEICLTGSAIE-----ELPSPIECL 123 (463)
Q Consensus 68 ~l--------------p~~i~~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~~~i~-----~lp~~i~~l 123 (463)
.. ..-+++-++|+.+...+|. +.. +...+...+.|+.+.++.|.|. -+...+..+
T Consensus 134 ~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~ 212 (382)
T KOG1909|consen 134 PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHC 212 (382)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhC
Confidence 22 1224567889999998854 443 3345677899999999999875 234457889
Q ss_pred CCccEEecCCCCCCCc----CcccCCCCCCccEEEeeCCCCCC-----ccccc-CCccccccccccccccc-----ccch
Q 012450 124 SALCVLDLGDCKSLKS----LKLPFDGLYSLTYLYLTDCAITE-----LPESL-GLLSSLEELYLERNNFE-----RIPE 188 (463)
Q Consensus 124 ~~L~~L~l~~c~~l~~----l~~~l~~l~~L~~L~L~~~~l~~-----~p~~l-~~l~~L~~L~Ls~n~l~-----~lp~ 188 (463)
++|+.||+.+|..-.. +...+..+++|+.|++++|.+.. +-..+ ...|+|+.|.+.+|.++ .+-.
T Consensus 213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~ 292 (382)
T KOG1909|consen 213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA 292 (382)
T ss_pred CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence 9999999999873322 33346678899999999998875 22222 35789999999999885 3445
Q ss_pred hhhCCCCccEecccccc
Q 012450 189 SIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 189 ~l~~l~~L~~L~L~~c~ 205 (463)
.+...+.|..|+|++|.
T Consensus 293 ~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 293 CMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHhcchhhHHhcCCccc
Confidence 67778999999999994
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.33 E-value=1.3e-08 Score=99.43 Aligned_cols=222 Identities=20% Similarity=0.267 Sum_probs=143.3
Q ss_pred CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC---CCCCCCccEEEeecc-CCCc--cCccccC
Q 012450 2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE---ISSAGNIEKILLDGT-AIEE--LPSSIGC 75 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~---l~~l~~L~~L~L~~~-~i~~--lp~~i~~ 75 (463)
++|||++.|.+.+|.++++...-..-..+++|+.|++..|..++...- ...+++|++|+++++ .|+. +..-...
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 468899999999998887763233444678888888888877775432 346778888888875 3432 2222233
Q ss_pred CCCccEEeee--------------------------cCCCCCccc--hhcCCCCCCcEEEEECCCC-c--cCCccCCCCC
Q 012450 76 LSRLLELNLG--------------------------DCKNLKTLP--SSLCKLKSLEEICLTGSAI-E--ELPSPIECLS 124 (463)
Q Consensus 76 l~~L~~L~l~--------------------------~c~~l~~lp--~~l~~l~~L~~L~l~~~~i-~--~lp~~i~~l~ 124 (463)
+++++.+.++ .|..++... ..-..+..|+.|+.+++.- + .+.....+..
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 3444444444 443333221 1123467788888877543 2 2223456789
Q ss_pred CccEEecCCCCCCCcCcc--cCCCCCCccEEEeeCCCCCC---cccccCCcccccccccccccc-cc-----cchhhhCC
Q 012450 125 ALCVLDLGDCKSLKSLKL--PFDGLYSLTYLYLTDCAITE---LPESLGLLSSLEELYLERNNF-ER-----IPESIIRL 193 (463)
Q Consensus 125 ~L~~L~l~~c~~l~~l~~--~l~~l~~L~~L~L~~~~l~~---~p~~l~~l~~L~~L~Ls~n~l-~~-----lp~~l~~l 193 (463)
+|+.|.+.+|+.+++.-. .-.+++.|+.+++..|.... +-..-.+++.|+.|.+++|.. +. +...-..+
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~ 400 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL 400 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence 999999999998776432 23567899999999996542 444556899999999999864 22 23344567
Q ss_pred CCccEeccccccccccCCCCCCCccEeeccCcccccc
Q 012450 194 SKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLES 230 (463)
Q Consensus 194 ~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c~~L~~ 230 (463)
..|+.+.+++|+.+++- .|+ ++..|+.|+.
T Consensus 401 ~~l~~lEL~n~p~i~d~-----~Le--~l~~c~~Ler 430 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDA-----TLE--HLSICRNLER 430 (483)
T ss_pred cccceeeecCCCCchHH-----HHH--HHhhCcccce
Confidence 88999999999766541 222 2345666665
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=4.5e-07 Score=66.32 Aligned_cols=58 Identities=34% Similarity=0.452 Sum_probs=42.9
Q ss_pred CCccEEEeeCCCCCCcc-cccCCcccccccccccccccccch-hhhCCCCccEecccccc
Q 012450 148 YSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 148 ~~L~~L~L~~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~ 205 (463)
++|+.|++++|++..+| ..+..+++|++|++++|+++.++. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45777778877777766 356678888888888888877663 66778888888888774
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.27 E-value=7.8e-07 Score=65.01 Aligned_cols=57 Identities=26% Similarity=0.487 Sum_probs=27.1
Q ss_pred CccEEEeeccCCCccCc-cccCCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEECCC
Q 012450 55 NIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSA 112 (463)
Q Consensus 55 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~ 112 (463)
+|++|++++|.++.+|. .+..+++|++|++++|. +..++ ..+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555543 24445555555555432 23332 334455555555555443
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2e-08 Score=94.06 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=65.1
Q ss_pred ccEEEeeccCCC--ccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCC-Ccc--CCccCCCCCCccEEe
Q 012450 56 IEKILLDGTAIE--ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSA-IEE--LPSPIECLSALCVLD 130 (463)
Q Consensus 56 L~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~-i~~--lp~~i~~l~~L~~L~ 130 (463)
|++|+|++..|+ .+...+..|.+|+.|.+.+...-..+-..+..-.+|+.|+++++. +++ +.-.+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 555555555554 333334455555555555543322333334444555555555532 221 111234445555555
Q ss_pred cCCCCCCCcCcc-c-CCCCCCccEEEeeCCCC----CCcccccCCcccccccccccccc-c-ccchhhhCCCCccEeccc
Q 012450 131 LGDCKSLKSLKL-P-FDGLYSLTYLYLTDCAI----TELPESLGLLSSLEELYLERNNF-E-RIPESIIRLSKLSSLLVS 202 (463)
Q Consensus 131 l~~c~~l~~l~~-~-l~~l~~L~~L~L~~~~l----~~~p~~l~~l~~L~~L~Ls~n~l-~-~lp~~l~~l~~L~~L~L~ 202 (463)
++.|...+..-. . -+--++|+.|+|+|+.- ..+..-...+++|.+|||++|.. + ..-..+.+++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 555442221100 0 01113445555555421 11222234455555555555532 2 222344555555555555
Q ss_pred ccc
Q 012450 203 YCE 205 (463)
Q Consensus 203 ~c~ 205 (463)
.|.
T Consensus 347 RCY 349 (419)
T KOG2120|consen 347 RCY 349 (419)
T ss_pred hhc
Confidence 554
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.14 E-value=7.4e-08 Score=99.85 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=8.6
Q ss_pred cccCCcCccEEeeecC
Q 012450 26 LIQHLNKLVILNLSGC 41 (463)
Q Consensus 26 ~~~~l~~L~~L~L~~c 41 (463)
.+..+.+|++|.|.+|
T Consensus 104 ~ifpF~sLr~LElrg~ 119 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGC 119 (1096)
T ss_pred eeccccceeeEEecCc
Confidence 3444555555555555
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.13 E-value=7.4e-08 Score=99.85 Aligned_cols=175 Identities=23% Similarity=0.227 Sum_probs=120.0
Q ss_pred CCCCCcceeecccccCcCCCCCcccccCC-cCccEEeeecC---------CCCCCCCCCCCCCCccEEEeeccCCCccCc
Q 012450 2 QHHGKLNQIIMAACNIFTKTPNPSLIQHL-NKLVILNLSGC---------SKLKSLPEISSAGNIEKILLDGTAIEELPS 71 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l-~~L~~L~L~~c---------~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~ 71 (463)
..+..|+.|.|.+|..-+ . .++..+ ..|+.|...+. ...+++..-..-..|...+.+.|.+..+..
T Consensus 106 fpF~sLr~LElrg~~L~~-~---~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLST-A---KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred ccccceeeEEecCcchhh-h---hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence 467889999999987544 2 122222 23444443321 001111111123356777788889999999
Q ss_pred cccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCcc
Q 012450 72 SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLT 151 (463)
Q Consensus 72 ~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~ 151 (463)
++.-++.|+.|+|+.|+. .... .+..++.|++|||++|.+..+|..-..--+|..|.+++|. ++.+.. +.++.+|+
T Consensus 182 SLqll~ale~LnLshNk~-~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~-l~tL~g-ie~LksL~ 257 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKF-TKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA-LTTLRG-IENLKSLY 257 (1096)
T ss_pred HHHHHHHhhhhccchhhh-hhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccH-HHhhhh-HHhhhhhh
Confidence 999999999999999754 3333 6888999999999999999888643322348999999876 565554 77888999
Q ss_pred EEEeeCCCCCCcc--cccCCccccccccccccccc
Q 012450 152 YLYLTDCAITELP--ESLGLLSSLEELYLERNNFE 184 (463)
Q Consensus 152 ~L~L~~~~l~~~p--~~l~~l~~L~~L~Ls~n~l~ 184 (463)
.||+++|-+.+.. ..+..+..|+.|.|.||.+-
T Consensus 258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999999776621 23566788999999998763
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=1e-05 Score=76.24 Aligned_cols=199 Identities=22% Similarity=0.264 Sum_probs=121.9
Q ss_pred CcCccEEeeecCCCCCCCCC----CCCCCCccEEEeeccCCC---ccCccccCCCCccEEeeecCCCCCccchhc-CCCC
Q 012450 30 LNKLVILNLSGCSKLKSLPE----ISSAGNIEKILLDGTAIE---ELPSSIGCLSRLLELNLGDCKNLKTLPSSL-CKLK 101 (463)
Q Consensus 30 l~~L~~L~L~~c~~l~~lp~----l~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l-~~l~ 101 (463)
...++.|-+.+| .+....+ -...+.++.|+|.+|.|+ ++-..+.+++.|++|+++.|..-..+ ..+ ....
T Consensus 44 ~ra~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~ 121 (418)
T KOG2982|consen 44 LRALELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLK 121 (418)
T ss_pred ccchhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCccccc
Confidence 334445555554 2222222 234677888888888887 44445678888888888865432221 112 2456
Q ss_pred CCcEEEEECCCCc--cCCccCCCCCCccEEecCCCCCCCcC--------------------cc----------cCCCCCC
Q 012450 102 SLEEICLTGSAIE--ELPSPIECLSALCVLDLGDCKSLKSL--------------------KL----------PFDGLYS 149 (463)
Q Consensus 102 ~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~l--------------------~~----------~l~~l~~ 149 (463)
+|+.|-+.|+.+. .+.+.+..++.++.|+++.|+ ++.+ |. ....+++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 7888888887764 556666777777777777663 1110 00 0113466
Q ss_pred ccEEEeeCCCCCCc--ccccCCcccccccccccccccccc--hhhhCCCCccEeccccccccccCCCCCCCccEeeccCc
Q 012450 150 LTYLYLTDCAITEL--PESLGLLSSLEELYLERNNFERIP--ESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHC 225 (463)
Q Consensus 150 L~~L~L~~~~l~~~--p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c 225 (463)
+..+-+..|++.+. -.....++.+.-|+|+.+++.++. +.+.+++.|..|.+++++....+..- --+.|-|...
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~--err~llIaRL 278 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGG--ERRFLLIARL 278 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCC--cceEEEEeec
Confidence 77777777766652 234456777888899998887543 46778899999999988776666541 1233445555
Q ss_pred cccccccc
Q 012450 226 TTLESLSG 233 (463)
Q Consensus 226 ~~L~~l~~ 233 (463)
++++.+.+
T Consensus 279 ~~v~vLNG 286 (418)
T KOG2982|consen 279 TKVQVLNG 286 (418)
T ss_pred cceEEecC
Confidence 55555544
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.1e-05 Score=54.62 Aligned_cols=39 Identities=38% Similarity=0.505 Sum_probs=23.4
Q ss_pred CccEEEeeCCCCCCcccccCCcccccccccccccccccc
Q 012450 149 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP 187 (463)
Q Consensus 149 ~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp 187 (463)
+|++|++++|+++++|..++++++|+.|++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 466666666666666655666666666666666665544
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=8.1e-06 Score=88.05 Aligned_cols=105 Identities=23% Similarity=0.310 Sum_probs=51.6
Q ss_pred CCcceeecccccCcCCCCCccccc-CCcCccEEeeecCCCCCC--CCC-CCCCCCccEEEeeccCCCccCccccCCCCcc
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQ-HLNKLVILNLSGCSKLKS--LPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLL 80 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~-~l~~L~~L~L~~c~~l~~--lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 80 (463)
.+|+.|+++|...+..- |+..++ .+|.|+.|.+.+ ..+.. +.. ..++++|..||+++++++.+ .++++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~-W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNG-WPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhcc-HHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 35666666664433322 122222 356666666665 22211 111 34566666666666666655 4466666666
Q ss_pred EEeeecCCCCC-ccchhcCCCCCCcEEEEECCC
Q 012450 81 ELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSA 112 (463)
Q Consensus 81 ~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~~~ 112 (463)
.|.+.+-..-. ..-..+.+|++|+.||+|...
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 66665422111 111234556666666666543
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=4.1e-06 Score=78.84 Aligned_cols=178 Identities=17% Similarity=0.219 Sum_probs=96.5
Q ss_pred CCCcceeecccccCcCCCC-CcccccCCcCccEEeeecCCCCCCCCCC-CCCCCccEEEeeccCCC--ccCccccCCCCc
Q 012450 4 HGKLNQIIMAACNIFTKTP-NPSLIQHLNKLVILNLSGCSKLKSLPEI-SSAGNIEKILLDGTAIE--ELPSSIGCLSRL 79 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~~-~~~~~~~l~~L~~L~L~~c~~l~~lp~l-~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L 79 (463)
++.+++|||.+ +.+.+.. ....+.++|.|++|+|+.|..-..+..+ ....+|+.|.|.|+.+. ...+.+..++.+
T Consensus 70 ~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45666677776 3333320 0233456777777777764332222222 24557777777777554 455556667777
Q ss_pred cEEeeecCCCCCcc---chhcCCC-CCCcEEEEECCCCc---cCCccCCCCCCccEEecCCCCCCCcCc--ccCCCCCCc
Q 012450 80 LELNLGDCKNLKTL---PSSLCKL-KSLEEICLTGSAIE---ELPSPIECLSALCVLDLGDCKSLKSLK--LPFDGLYSL 150 (463)
Q Consensus 80 ~~L~l~~c~~l~~l---p~~l~~l-~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~~l~~l~--~~l~~l~~L 150 (463)
+.|.++.|+ ++.+ ...+... +.+++|+..+|... .+-.....++++..+-+..|+ +++.. .....++.+
T Consensus 149 telHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 149 TELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcc
Confidence 777666642 1111 0111111 23444444444322 000111234566666666665 22221 234556777
Q ss_pred cEEEeeCCCCCCc--ccccCCccccccccccccccc
Q 012450 151 TYLYLTDCAITEL--PESLGLLSSLEELYLERNNFE 184 (463)
Q Consensus 151 ~~L~L~~~~l~~~--p~~l~~l~~L~~L~Ls~n~l~ 184 (463)
-.|+|+.+++.+. -..+..++.|..|.++++.+.
T Consensus 227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 7899999988773 345778999999999998763
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.72 E-value=9.3e-06 Score=87.61 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=58.3
Q ss_pred CCccEEEeecc-CCC-ccCccc-cCCCCccEEeeecCCCC-CccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEE
Q 012450 54 GNIEKILLDGT-AIE-ELPSSI-GCLSRLLELNLGDCKNL-KTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVL 129 (463)
Q Consensus 54 ~~L~~L~L~~~-~i~-~lp~~i-~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 129 (463)
.+|++|+++|. .+. ..|..+ .-||+|+.|.+.+-... ..+-....++++|..||+++++++.+ ..++.|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 34555555553 111 222222 22455566655542111 11222334555666666666665555 455555666555
Q ss_pred ecCCCCCCCc-CcccCCCCCCccEEEeeCCCCCCcc-------cccCCcccccccccccccc
Q 012450 130 DLGDCKSLKS-LKLPFDGLYSLTYLYLTDCAITELP-------ESLGLLSSLEELYLERNNF 183 (463)
Q Consensus 130 ~l~~c~~l~~-l~~~l~~l~~L~~L~L~~~~l~~~p-------~~l~~l~~L~~L~Ls~n~l 183 (463)
.+.+-..... --..+.++++|+.||+|.......+ +.-..+|+|+.||.|++.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 5554221110 0001345556666666555433321 1112355666666666554
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=2.3e-05 Score=53.03 Aligned_cols=42 Identities=29% Similarity=0.448 Sum_probs=34.6
Q ss_pred ccccccccccccccccchhhhCCCCccEeccccccccccCCCC
Q 012450 171 SSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL 213 (463)
Q Consensus 171 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l 213 (463)
++|++|++++|+++.+|..+.+|++|+.|++++| .+++++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcCC
Confidence 4799999999999999988999999999999999 45555543
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.66 E-value=4.2e-06 Score=87.07 Aligned_cols=108 Identities=30% Similarity=0.405 Sum_probs=48.4
Q ss_pred CcCccEEeeecCCCCCCCC--C-CCCCCCccEEEeecc--CCCc----cCccccCCCCccEEeeecCCCCCccc-hhc-C
Q 012450 30 LNKLVILNLSGCSKLKSLP--E-ISSAGNIEKILLDGT--AIEE----LPSSIGCLSRLLELNLGDCKNLKTLP-SSL-C 98 (463)
Q Consensus 30 l~~L~~L~L~~c~~l~~lp--~-l~~l~~L~~L~L~~~--~i~~----lp~~i~~l~~L~~L~l~~c~~l~~lp-~~l-~ 98 (463)
++.|+.|.+.+|..+.... . ...+++|+.|+++++ .+.. .......+++|+.|++++|..+.... ..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4555555555554444421 1 444555555555541 1111 11122334556666666555333221 111 1
Q ss_pred CCCCCcEEEEECCC-Cc--cCCccCCCCCCccEEecCCCCCC
Q 012450 99 KLKSLEEICLTGSA-IE--ELPSPIECLSALCVLDLGDCKSL 137 (463)
Q Consensus 99 ~l~~L~~L~l~~~~-i~--~lp~~i~~l~~L~~L~l~~c~~l 137 (463)
.+++|+.|.+.++. ++ .+-.....+++|++|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 25566666654444 22 22223344555666666666554
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.42 E-value=9.8e-06 Score=68.02 Aligned_cols=56 Identities=30% Similarity=0.365 Sum_probs=29.1
Q ss_pred CccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEeccccc
Q 012450 149 SLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC 204 (463)
Q Consensus 149 ~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c 204 (463)
.++.|++++|.+.++|..+..++.|+.|+++.|.+...|.-+..+.+|-.|+..++
T Consensus 78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 44555555555555555555555555555555555555544444445555544443
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.41 E-value=2.1e-05 Score=81.91 Aligned_cols=171 Identities=23% Similarity=0.253 Sum_probs=108.7
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeec-CCCCCCCCC-----CCCCCCccEEEeeccC-CCcc--Cccc
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSG-CSKLKSLPE-----ISSAGNIEKILLDGTA-IEEL--PSSI 73 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~-c~~l~~lp~-----l~~l~~L~~L~L~~~~-i~~l--p~~i 73 (463)
.+++|+.|.+.+|..+++.........+++|+.|++++ |......+. ...+.+|+.|+++.+. ++.. ....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 47899999999999988842146677899999999998 444444441 4557899999999976 6522 2222
Q ss_pred cCCCCccEEeeecCCCCCc--cchhcCCCCCCcEEEEECCCCc---cCCccCCCCCCccEEecCCCCCCCcCcccCCCCC
Q 012450 74 GCLSRLLELNLGDCKNLKT--LPSSLCKLKSLEEICLTGSAIE---ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLY 148 (463)
Q Consensus 74 ~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~ 148 (463)
..+++|+.|.+.+|..++. +-.....+++|++|+++++... .+.....++++|+.|.+..+.. +.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence 3488999999998886442 3334567889999999987653 1222233355555544333221 33
Q ss_pred CccEEEeeCCCC----CCcccccCCcccccccccccccc
Q 012450 149 SLTYLYLTDCAI----TELPESLGLLSSLEELYLERNNF 183 (463)
Q Consensus 149 ~L~~L~L~~~~l----~~~p~~l~~l~~L~~L~Ls~n~l 183 (463)
.++.+.+.++.. ......+..+++|+.+.+..+..
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI 374 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence 444444444322 11223455677777777777663
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.39 E-value=0.00035 Score=62.58 Aligned_cols=102 Identities=24% Similarity=0.224 Sum_probs=43.8
Q ss_pred ccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCc--cCCCCCCccEEecCC
Q 012450 56 IEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS--PIECLSALCVLDLGD 133 (463)
Q Consensus 56 L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~ 133 (463)
...++|++|.+..++. +..++.|.+|.+.+|.....-|.--..+++|..|.+.+|.|.++-+ .+..++.|++|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 3344444444443322 3344444555444432222222212234445555555555443321 234445555555555
Q ss_pred CCCCCcC---cccCCCCCCccEEEeeCC
Q 012450 134 CKSLKSL---KLPFDGLYSLTYLYLTDC 158 (463)
Q Consensus 134 c~~l~~l---~~~l~~l~~L~~L~L~~~ 158 (463)
|+.-..- --.+..+++|+.||.++-
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhh
Confidence 4421110 002455677777776554
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.34 E-value=1.1e-05 Score=67.66 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=45.5
Q ss_pred CCCCCCccEEEeeccCCCccCcccc-CCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccE
Q 012450 50 ISSAGNIEKILLDGTAIEELPSSIG-CLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCV 128 (463)
Q Consensus 50 l~~l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 128 (463)
+.....|+..+|++|.++.+|..+. ..+.++.|++.+| .+..+|..+..++.|+.|+++.|.+...|.-+..+.+|..
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 3344455555555555555555432 2235555555553 3455555555556666666666655555555555555555
Q ss_pred EecCCCC
Q 012450 129 LDLGDCK 135 (463)
Q Consensus 129 L~l~~c~ 135 (463)
|+..++.
T Consensus 128 Lds~~na 134 (177)
T KOG4579|consen 128 LDSPENA 134 (177)
T ss_pred hcCCCCc
Confidence 5555443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.07 E-value=0.00084 Score=60.24 Aligned_cols=102 Identities=25% Similarity=0.301 Sum_probs=56.6
Q ss_pred CCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCC-CCCccEEecCCCCC--CCcCcccCCCCCCccE
Q 012450 76 LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIEC-LSALCVLDLGDCKS--LKSLKLPFDGLYSLTY 152 (463)
Q Consensus 76 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~-l~~L~~L~l~~c~~--l~~l~~~l~~l~~L~~ 152 (463)
+.....+++++|. +..++ .+..++.|.+|.+++|.|+.+.+.+.. +++|..|.+.+|+. +.++.. +..++.|++
T Consensus 41 ~d~~d~iDLtdNd-l~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEY 117 (233)
T ss_pred ccccceecccccc-hhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccce
Confidence 3456677777754 33333 356677788888888888877555433 34566666666542 222222 445556666
Q ss_pred EEeeCCCCCCcc----cccCCccccccccccc
Q 012450 153 LYLTDCAITELP----ESLGLLSSLEELYLER 180 (463)
Q Consensus 153 L~L~~~~l~~~p----~~l~~l~~L~~L~Ls~ 180 (463)
|.+-+|+++.-. -.+..+|+|+.||..+
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 666665554421 1234445555555444
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.92 E-value=0.00056 Score=64.00 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=27.6
Q ss_pred CCccEEEeeCCCCCCcccc-----cCCccccccccccccccc--cc----chhhhCCCCccEecccccc
Q 012450 148 YSLTYLYLTDCAITELPES-----LGLLSSLEELYLERNNFE--RI----PESIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 148 ~~L~~L~L~~~~l~~~p~~-----l~~l~~L~~L~Ls~n~l~--~l----p~~l~~l~~L~~L~L~~c~ 205 (463)
|.|+...+..|++...+.. +..-..|+.+.+..|.+. .+ -..+..+.+|+.|||.+|.
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 4456666655555443211 112235555555555542 11 1233445666666666653
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=4.9e-05 Score=71.12 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=45.1
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCcc--ccCCCCccEE
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSS--IGCLSRLLEL 82 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~--i~~l~~L~~L 82 (463)
.+.+.|+.-|| .+.++ +....|+.|++|.|+- +.++.+..+..+++|++|+|..|.|..+.+- +.++++|+.|
T Consensus 19 ~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCC-CccHH---HHHHhcccceeEEeec-cccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34455555554 34444 4455566666666665 3555555566666666666666655544432 4555666666
Q ss_pred eeecCCCCC
Q 012450 83 NLGDCKNLK 91 (463)
Q Consensus 83 ~l~~c~~l~ 91 (463)
.|..|.-..
T Consensus 94 WL~ENPCc~ 102 (388)
T KOG2123|consen 94 WLDENPCCG 102 (388)
T ss_pred hhccCCccc
Confidence 665544433
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.00018 Score=67.39 Aligned_cols=83 Identities=24% Similarity=0.316 Sum_probs=57.2
Q ss_pred CCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccc--hhhhCCCCccEecc
Q 012450 124 SALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIP--ESIIRLSKLSSLLV 201 (463)
Q Consensus 124 ~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L 201 (463)
.+.+.|++.||. +.++.. ...++.|+.|.|+-|.++.+ ..+..|++|++|+|..|.|.++- .-+.++++|+.|+|
T Consensus 19 ~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCC-ccHHHH-HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 344455555554 444432 45677888888888888876 34678888888888888877654 35677888888888
Q ss_pred cccccccc
Q 012450 202 SYCERLQS 209 (463)
Q Consensus 202 ~~c~~l~~ 209 (463)
..|+-...
T Consensus 96 ~ENPCc~~ 103 (388)
T KOG2123|consen 96 DENPCCGE 103 (388)
T ss_pred ccCCcccc
Confidence 88764443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.78 E-value=0.00034 Score=65.08 Aligned_cols=102 Identities=24% Similarity=0.245 Sum_probs=59.9
Q ss_pred CCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCC--CCCC-cccccCCcccccccccccccccc---cchhhhCCCCc
Q 012450 123 LSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC--AITE-LPESLGLLSSLEELYLERNNFER---IPESIIRLSKL 196 (463)
Q Consensus 123 l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~--~l~~-~p~~l~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L 196 (463)
+..|..|++.++. ++.+.. +..+++|++|.++.| .+.. ++..+..+|+|++|++++|+++. ++ .+..+.+|
T Consensus 42 ~~~le~ls~~n~g-ltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVG-LTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENL 118 (260)
T ss_pred ccchhhhhhhccc-eeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcch
Confidence 3444444444443 222221 445667778888777 4443 54455566888888888887653 33 45667788
Q ss_pred cEeccccccccc------cCCCCCCCccEeeccCccc
Q 012450 197 SSLLVSYCERLQ------SLPKLPCNLYWLDAQHCTT 227 (463)
Q Consensus 197 ~~L~L~~c~~l~------~l~~l~~~L~~L~i~~c~~ 227 (463)
..|++.+|.-.+ .+-.+.++|++|+-..+..
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 888888885433 1112446666666655443
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.67 E-value=0.00051 Score=64.28 Aligned_cols=157 Identities=20% Similarity=0.196 Sum_probs=96.3
Q ss_pred ccCCcCccEEeeecCCCCCCCC----C-CCCCCCccEEEeeccC---CC-ccCc-------cccCCCCccEEeeecCCCC
Q 012450 27 IQHLNKLVILNLSGCSKLKSLP----E-ISSAGNIEKILLDGTA---IE-ELPS-------SIGCLSRLLELNLGDCKNL 90 (463)
Q Consensus 27 ~~~l~~L~~L~L~~c~~l~~lp----~-l~~l~~L~~L~L~~~~---i~-~lp~-------~i~~l~~L~~L~l~~c~~l 90 (463)
+..+..+..++|+||..-+.-. . +.+-.+|+..+++.-. .+ ++++ .+-.|++|+..+|++|...
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3457788888888865544322 1 5566777777777631 11 3332 3456788888888887665
Q ss_pred Cccc----hhcCCCCCCcEEEEECCCCccCCc--------------cCCCCCCccEEecCCCCCCCcCccc-----CCCC
Q 012450 91 KTLP----SSLCKLKSLEEICLTGSAIEELPS--------------PIECLSALCVLDLGDCKSLKSLKLP-----FDGL 147 (463)
Q Consensus 91 ~~lp----~~l~~l~~L~~L~l~~~~i~~lp~--------------~i~~l~~L~~L~l~~c~~l~~l~~~-----l~~l 147 (463)
...| +.|+.-+.|++|.+++|++..+.. -...-+.|+......|. +...+.. +..-
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh 184 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESH 184 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhh
Confidence 5544 345677788888888887753321 12334567777666554 3332221 1122
Q ss_pred CCccEEEeeCCCCCC------cccccCCccccccccccccccc
Q 012450 148 YSLTYLYLTDCAITE------LPESLGLLSSLEELYLERNNFE 184 (463)
Q Consensus 148 ~~L~~L~L~~~~l~~------~p~~l~~l~~L~~L~Ls~n~l~ 184 (463)
..|+.+.+..|.|.. +-..+..+.+|+.|+|.+|-|+
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 467888888887753 1223456778888888888775
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.61 E-value=0.001 Score=62.04 Aligned_cols=107 Identities=22% Similarity=0.245 Sum_probs=72.0
Q ss_pred ccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeecc--CCC-ccCccccCCCCccEEeeecCCCC--CccchhcCCCC
Q 012450 27 IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGT--AIE-ELPSSIGCLSRLLELNLGDCKNL--KTLPSSLCKLK 101 (463)
Q Consensus 27 ~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~--~i~-~lp~~i~~l~~L~~L~l~~c~~l--~~lp~~l~~l~ 101 (463)
...+..|+.|++.++ .++.+..+..+++|++|.++.| ++. .++.....+++|++|++++|+.- ..++ .+..++
T Consensus 39 ~d~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELE 116 (260)
T ss_pred cccccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhc
Confidence 345667777777763 5555666777889999999988 554 55555667799999999986532 1222 245677
Q ss_pred CCcEEEEECCCCccCCc----cCCCCCCccEEecCCCC
Q 012450 102 SLEEICLTGSAIEELPS----PIECLSALCVLDLGDCK 135 (463)
Q Consensus 102 ~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~l~~c~ 135 (463)
+|..|++.+|..+.+-. .+.-+++|++|+-....
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 78888888887765432 23456778888766544
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.15 E-value=0.06 Score=44.99 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=20.0
Q ss_pred ccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCCccEEeee
Q 012450 27 IQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELNLG 85 (463)
Q Consensus 27 ~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~ 85 (463)
+.++.+|+.+.+.. .++.++. +..+++|+.+.+.++ +..++.. +..+++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 44445555555542 2334433 444445555555442 4433332 3344445555553
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.14 E-value=0.064 Score=44.85 Aligned_cols=100 Identities=17% Similarity=0.310 Sum_probs=59.0
Q ss_pred CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCC
Q 012450 2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSR 78 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~ 78 (463)
.++++|+.+.+.. .++.+. ...+.++++|+.+.+.+ .+..++. +..+++|+.+.+.+ .+..++.. +..+++
T Consensus 9 ~~~~~l~~i~~~~--~~~~I~-~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 9 YNCSNLESITFPN--TIKKIG-ENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TT-TT--EEEETS--T--EE--TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred hCCCCCCEEEECC--CeeEeC-hhhcccccccccccccc--cccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4678899999874 455554 45688898999999987 3777777 78888999999976 66655544 566899
Q ss_pred ccEEeeecCCCCCccchh-cCCCCCCcEEEEEC
Q 012450 79 LLELNLGDCKNLKTLPSS-LCKLKSLEEICLTG 110 (463)
Q Consensus 79 L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~ 110 (463)
|+.+.+.. .+..++.. +.+. +|+.+.+..
T Consensus 83 l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 99999965 25555543 4555 777777654
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.71 E-value=0.011 Score=33.35 Aligned_cols=18 Identities=50% Similarity=0.623 Sum_probs=9.1
Q ss_pred ccccccccccccccchhh
Q 012450 173 LEELYLERNNFERIPESI 190 (463)
Q Consensus 173 L~~L~Ls~n~l~~lp~~l 190 (463)
|++|+|++|+++.+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.42 E-value=0.015 Score=32.81 Aligned_cols=18 Identities=33% Similarity=0.613 Sum_probs=9.4
Q ss_pred ccEEEeeccCCCccCccc
Q 012450 56 IEKILLDGTAIEELPSSI 73 (463)
Q Consensus 56 L~~L~L~~~~i~~lp~~i 73 (463)
|++|++++|.++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.23 E-value=0.033 Score=29.23 Aligned_cols=10 Identities=30% Similarity=0.282 Sum_probs=3.1
Q ss_pred ccEEEeeCCC
Q 012450 150 LTYLYLTDCA 159 (463)
Q Consensus 150 L~~L~L~~~~ 159 (463)
|+.|+|++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=0.011 Score=53.31 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=47.9
Q ss_pred cceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--C-CCCCCccEEEeecc-CCCcc-CccccCCCCccE
Q 012450 7 LNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--I-SSAGNIEKILLDGT-AIEEL-PSSIGCLSRLLE 81 (463)
Q Consensus 7 L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l-~~l~~L~~L~L~~~-~i~~l-p~~i~~l~~L~~ 81 (463)
++.+|-+++....+- -+.+..++.++.|.+.+|..+.+.-- + +-.++|+.|+|++| .|++- -..+..+++|+.
T Consensus 103 IeaVDAsds~I~~eG--le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEG--LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHH--HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 345555554433333 34556677777777777766654321 2 24677888888876 66632 233667778888
Q ss_pred EeeecCC
Q 012450 82 LNLGDCK 88 (463)
Q Consensus 82 L~l~~c~ 88 (463)
|.+.+-+
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 8777643
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.18 E-value=0.094 Score=27.50 Aligned_cols=13 Identities=8% Similarity=0.253 Sum_probs=4.2
Q ss_pred ccEEEeeccCCCc
Q 012450 56 IEKILLDGTAIEE 68 (463)
Q Consensus 56 L~~L~L~~~~i~~ 68 (463)
|+.|++++|.+++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444433
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.70 E-value=0.0035 Score=65.04 Aligned_cols=18 Identities=11% Similarity=0.329 Sum_probs=9.5
Q ss_pred CCCCCCccEEEeeccCCC
Q 012450 50 ISSAGNIEKILLDGTAIE 67 (463)
Q Consensus 50 l~~l~~L~~L~L~~~~i~ 67 (463)
+...+.|+.|++++|.+.
T Consensus 111 l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred hcccccHhHhhcccCCCc
Confidence 334555555555555544
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.87 E-value=0.062 Score=48.49 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=16.3
Q ss_pred cccccccccccc-cccc-cchhhhCCCCccEeccccc
Q 012450 170 LSSLEELYLERN-NFER-IPESIIRLSKLSSLLVSYC 204 (463)
Q Consensus 170 l~~L~~L~Ls~n-~l~~-lp~~l~~l~~L~~L~L~~c 204 (463)
.++|+.|+|++| +|++ --..+.++++|+.|.|.+-
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 344555555544 2331 1134555555555555543
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.11 E-value=0.41 Score=27.90 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=11.8
Q ss_pred ccccccccccccccccchh
Q 012450 171 SSLEELYLERNNFERIPES 189 (463)
Q Consensus 171 ~~L~~L~Ls~n~l~~lp~~ 189 (463)
++|+.|+|++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666644
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.11 E-value=0.41 Score=27.90 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=11.8
Q ss_pred ccccccccccccccccchh
Q 012450 171 SSLEELYLERNNFERIPES 189 (463)
Q Consensus 171 ~~L~~L~Ls~n~l~~lp~~ 189 (463)
++|+.|+|++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666644
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.95 E-value=0.55 Score=27.33 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=13.8
Q ss_pred CCCccEEEeeccCCCccCcc
Q 012450 53 AGNIEKILLDGTAIEELPSS 72 (463)
Q Consensus 53 l~~L~~L~L~~~~i~~lp~~ 72 (463)
+++|+.|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777664
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.95 E-value=0.55 Score=27.33 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=13.8
Q ss_pred CCCccEEEeeccCCCccCcc
Q 012450 53 AGNIEKILLDGTAIEELPSS 72 (463)
Q Consensus 53 l~~L~~L~L~~~~i~~lp~~ 72 (463)
+++|+.|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777664
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.90 E-value=0.027 Score=51.88 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=41.9
Q ss_pred CCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEE
Q 012450 50 ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVL 129 (463)
Q Consensus 50 l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 129 (463)
+......+.|+++.+.+..+-..+..++.|..|+++. +.+..+|..+..+..+..+++..|..+..|.+.+..+.++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 4444455555555554444444444455555555554 234445555555555555555555555555555555555555
Q ss_pred ecCCC
Q 012450 130 DLGDC 134 (463)
Q Consensus 130 ~l~~c 134 (463)
++.++
T Consensus 117 e~k~~ 121 (326)
T KOG0473|consen 117 EQKKT 121 (326)
T ss_pred hhccC
Confidence 44443
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.78 E-value=0.67 Score=27.06 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=12.2
Q ss_pred CCCcceeecccccCcCCC
Q 012450 4 HGKLNQIIMAACNIFTKT 21 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~ 21 (463)
|++|++|+|++|..+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 467777777777766653
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.82 E-value=0.075 Score=49.03 Aligned_cols=83 Identities=23% Similarity=0.188 Sum_probs=53.5
Q ss_pred CCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEecc
Q 012450 122 CLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLV 201 (463)
Q Consensus 122 ~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 201 (463)
.....+.||++.+. +..+...+..++.|..|+++.+.+.-+|.+++....+..+++..|+.+..|.+..+.++++++++
T Consensus 40 ~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 34444555555443 23333334455566677777776666777777777777777777777777777777777777777
Q ss_pred cccc
Q 012450 202 SYCE 205 (463)
Q Consensus 202 ~~c~ 205 (463)
.+++
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 7664
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=77.21 E-value=0.053 Score=56.41 Aligned_cols=151 Identities=25% Similarity=0.248 Sum_probs=87.9
Q ss_pred ccEEEeeccCCC-----ccCccccCCCCccEEeeecCCCCCc----cchhcCCC-CCCcEEEEECCCCc-----cCCccC
Q 012450 56 IEKILLDGTAIE-----ELPSSIGCLSRLLELNLGDCKNLKT----LPSSLCKL-KSLEEICLTGSAIE-----ELPSPI 120 (463)
Q Consensus 56 L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~l~~----lp~~l~~l-~~L~~L~l~~~~i~-----~lp~~i 120 (463)
+..|.|.+|.+. .+-..+.....|..|++++|..... +-..+... ..|+.|.+..|.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 666777777665 2334456677788888887654321 11122222 45666666666665 234445
Q ss_pred CCCCCccEEecCCCCCCCc----CcccC----CCCCCccEEEeeCCCCCC-----cccccCCccc-cccccccccccc--
Q 012450 121 ECLSALCVLDLGDCKSLKS----LKLPF----DGLYSLTYLYLTDCAITE-----LPESLGLLSS-LEELYLERNNFE-- 184 (463)
Q Consensus 121 ~~l~~L~~L~l~~c~~l~~----l~~~l----~~l~~L~~L~L~~~~l~~-----~p~~l~~l~~-L~~L~Ls~n~l~-- 184 (463)
.....++.++++.|..... ++..+ ....++++|++.+|.++. +...+...++ +..|++..|.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 5567777777777764321 11122 235678888888887764 2233455555 667888888653
Q ss_pred ---ccchhhhCC-CCccEeccccccc
Q 012450 185 ---RIPESIIRL-SKLSSLLVSYCER 206 (463)
Q Consensus 185 ---~lp~~l~~l-~~L~~L~L~~c~~ 206 (463)
.+...+..+ ..++.++++.|..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi 274 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSI 274 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCc
Confidence 233444555 5677888887753
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.14 E-value=1.6 Score=25.59 Aligned_cols=18 Identities=39% Similarity=0.676 Sum_probs=12.1
Q ss_pred ccccccccccccccccch
Q 012450 171 SSLEELYLERNNFERIPE 188 (463)
Q Consensus 171 ~~L~~L~Ls~n~l~~lp~ 188 (463)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356677777777777664
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=58.51 E-value=7.3 Score=22.89 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=10.4
Q ss_pred CCccEEEeeccCCCcc
Q 012450 54 GNIEKILLDGTAIEEL 69 (463)
Q Consensus 54 ~~L~~L~L~~~~i~~l 69 (463)
.+|+.|+++.|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4667777777766543
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=57.34 E-value=3.9 Score=23.13 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=7.2
Q ss_pred cccccccccccccc
Q 012450 171 SSLEELYLERNNFE 184 (463)
Q Consensus 171 ~~L~~L~Ls~n~l~ 184 (463)
++|++|+|++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666653
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.54 E-value=9 Score=40.01 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=45.1
Q ss_pred CCCCccEEEeeCCCCCC---cccccCCcccccccccccc--cccccchhhhC--CCCccEeccccccccccC--------
Q 012450 146 GLYSLTYLYLTDCAITE---LPESLGLLSSLEELYLERN--NFERIPESIIR--LSKLSSLLVSYCERLQSL-------- 210 (463)
Q Consensus 146 ~l~~L~~L~L~~~~l~~---~p~~l~~l~~L~~L~Ls~n--~l~~lp~~l~~--l~~L~~L~L~~c~~l~~l-------- 210 (463)
+.+.+..++|++|++.. +.......|+|+.|+|++| .+...+ ++.+ ...|++|.+.+|+-.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 44566777777776654 3333345677888888887 333222 2222 345777888887654433
Q ss_pred --CCCCCCccEeeccC
Q 012450 211 --PKLPCNLYWLDAQH 224 (463)
Q Consensus 211 --~~l~~~L~~L~i~~ 224 (463)
.+.+|+|..||=..
T Consensus 295 ~i~~~FPKL~~LDG~e 310 (585)
T KOG3763|consen 295 AIRELFPKLLRLDGVE 310 (585)
T ss_pred HHHHhcchheeecCcc
Confidence 33566666665433
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=33.99 E-value=27 Score=20.63 Aligned_cols=13 Identities=31% Similarity=0.302 Sum_probs=6.3
Q ss_pred CccEEEeeCCCCC
Q 012450 149 SLTYLYLTDCAIT 161 (463)
Q Consensus 149 ~L~~L~L~~~~l~ 161 (463)
+|+.|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 3455555555443
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=27.37 E-value=31 Score=36.25 Aligned_cols=17 Identities=12% Similarity=0.393 Sum_probs=11.7
Q ss_pred CC-CCceeeeEeEEEEEe
Q 012450 319 FS-NNKVFGFVFCAIVAF 335 (463)
Q Consensus 319 ~~-~~~~~gf~~c~v~~~ 335 (463)
|+ ..+.+||++--||.-
T Consensus 440 ~~~~~~~l~ftv~G~f~d 457 (585)
T KOG3763|consen 440 WYQTGNLLGFTVAGVFRD 457 (585)
T ss_pred eecccceEEEEEEEEeec
Confidence 66 566778888777653
Done!