Query 012450
Match_columns 463
No_of_seqs 457 out of 3780
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 09:41:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 1.7E-25 5.8E-30 220.7 15.8 206 4-214 80-297 (328)
2 1ogq_A PGIP-2, polygalacturona 99.9 2.2E-24 7.6E-29 211.2 10.9 219 5-226 50-279 (313)
3 4fcg_A Uncharacterized protein 99.9 5.8E-23 2E-27 202.5 16.7 198 2-204 101-311 (328)
4 1ogq_A PGIP-2, polygalacturona 99.9 2.7E-23 9.3E-28 203.5 12.5 226 2-230 73-306 (313)
5 3o6n_A APL1; leucine-rich repe 99.9 2.1E-22 7.3E-27 202.9 17.8 221 3-232 67-334 (390)
6 3rgz_A Protein brassinosteroid 99.9 1.4E-22 4.7E-27 222.0 17.2 222 3-226 416-715 (768)
7 3oja_B Anopheles plasmodium-re 99.9 3.3E-22 1.1E-26 212.9 17.3 221 3-232 73-340 (597)
8 3rgz_A Protein brassinosteroid 99.9 2.3E-22 8E-27 220.2 16.1 225 2-228 439-740 (768)
9 4fmz_A Internalin; leucine ric 99.9 1.8E-21 6.3E-26 192.6 20.1 217 2-232 63-281 (347)
10 4eco_A Uncharacterized protein 99.9 1.1E-22 3.7E-27 218.1 9.3 206 24-232 199-449 (636)
11 1ozn_A Reticulon 4 receptor; N 99.9 3.7E-21 1.3E-25 185.4 18.5 211 8-225 14-235 (285)
12 2z66_A Variable lymphocyte rec 99.9 8.1E-22 2.8E-26 191.9 13.8 172 31-204 28-209 (306)
13 1xku_A Decorin; proteoglycan, 99.9 7.7E-21 2.6E-25 187.1 20.7 220 4-232 51-279 (330)
14 3zyj_A Leucine-rich repeat-con 99.9 4.2E-21 1.4E-25 196.7 18.6 214 5-225 64-289 (440)
15 2ft3_A Biglycan; proteoglycan, 99.9 5.8E-21 2E-25 188.2 18.1 210 5-225 54-274 (332)
16 3v47_A TOLL-like receptor 5B a 99.9 5.1E-21 1.7E-25 196.4 18.3 92 141-233 292-388 (455)
17 1xku_A Decorin; proteoglycan, 99.9 1.5E-20 5.1E-25 185.0 20.9 218 6-236 32-260 (330)
18 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-20 4E-25 194.4 20.2 167 3-187 83-249 (457)
19 2id5_A Lingo-1, leucine rich r 99.9 1.7E-20 5.7E-25 194.0 21.4 227 2-232 53-312 (477)
20 3zyi_A Leucine-rich repeat-con 99.9 6E-21 2E-25 196.2 17.9 214 5-225 75-300 (452)
21 3zyi_A Leucine-rich repeat-con 99.9 1.3E-20 4.3E-25 193.8 20.0 218 7-233 56-283 (452)
22 4ecn_A Leucine-rich repeat pro 99.9 1.2E-21 4.1E-26 215.3 12.9 205 24-232 441-689 (876)
23 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-20 7.9E-25 179.8 19.5 199 4-206 31-237 (285)
24 4eco_A Uncharacterized protein 99.9 2.2E-21 7.5E-26 208.0 13.4 226 4-234 304-584 (636)
25 2id5_A Lingo-1, leucine rich r 99.9 2.3E-20 7.9E-25 192.9 20.7 217 4-225 31-282 (477)
26 4ecn_A Leucine-rich repeat pro 99.8 1.2E-20 4.2E-25 207.3 19.3 226 3-235 546-825 (876)
27 2z80_A TOLL-like receptor 2, v 99.8 6.2E-21 2.1E-25 189.6 15.0 171 32-204 53-232 (353)
28 4fmz_A Internalin; leucine ric 99.8 2.2E-20 7.5E-25 184.8 18.7 218 1-231 106-326 (347)
29 3v47_A TOLL-like receptor 5B a 99.8 1E-20 3.6E-25 194.1 16.9 131 5-137 30-167 (455)
30 1p9a_G Platelet glycoprotein I 99.8 1.3E-20 4.4E-25 182.4 16.2 193 3-204 8-205 (290)
31 2z80_A TOLL-like receptor 2, v 99.8 2.7E-21 9.3E-26 192.2 11.0 217 5-226 52-312 (353)
32 2xwt_C Thyrotropin receptor; s 99.8 2.5E-20 8.7E-25 174.8 16.9 206 15-228 20-239 (239)
33 2z7x_B TOLL-like receptor 1, v 99.8 2E-20 6.7E-25 195.5 17.8 97 145-241 321-426 (520)
34 3vq2_A TLR4, TOLL-like recepto 99.8 8.6E-21 3E-25 201.9 15.0 223 4-234 306-539 (606)
35 3zyj_A Leucine-rich repeat-con 99.8 4E-20 1.4E-24 189.4 19.0 217 7-233 45-272 (440)
36 2ft3_A Biglycan; proteoglycan, 99.8 3.7E-20 1.3E-24 182.4 17.6 217 6-236 34-261 (332)
37 1wwl_A Monocyte differentiatio 99.8 6.4E-21 2.2E-25 186.4 11.9 192 29-224 93-305 (312)
38 1h6u_A Internalin H; cell adhe 99.8 3.1E-20 1.1E-24 181.3 16.4 187 5-204 41-227 (308)
39 2z66_A Variable lymphocyte rec 99.8 2.9E-20 1E-24 180.8 16.1 219 4-226 27-259 (306)
40 3o6n_A APL1; leucine-rich repe 99.8 4.8E-20 1.6E-24 185.6 18.0 222 4-233 44-312 (390)
41 3t6q_A CD180 antigen; protein- 99.8 6.9E-20 2.4E-24 194.9 19.8 196 6-204 255-486 (606)
42 2o6q_A Variable lymphocyte rec 99.8 1.6E-19 5.4E-24 172.7 20.3 191 6-204 17-215 (270)
43 3t6q_A CD180 antigen; protein- 99.8 6.5E-20 2.2E-24 195.1 18.6 200 26-226 320-534 (606)
44 2z81_A CD282 antigen, TOLL-lik 99.8 2.6E-20 9E-25 195.7 15.3 86 2-89 71-160 (549)
45 2z62_A TOLL-like receptor 4, v 99.8 3.1E-20 1E-24 178.1 14.3 204 16-225 17-234 (276)
46 3bz5_A Internalin-J, INLJ; leu 99.8 1.2E-19 4.1E-24 186.8 19.5 203 3-225 40-243 (457)
47 3oja_B Anopheles plasmodium-re 99.8 5.8E-20 2E-24 195.5 17.6 222 4-233 50-318 (597)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1E-19 3.4E-24 192.2 19.2 82 145-226 350-439 (562)
49 3o53_A Protein LRIM1, AGAP0063 99.8 1.1E-20 3.8E-25 185.1 10.0 211 3-225 32-247 (317)
50 3vq2_A TLR4, TOLL-like recepto 99.8 2.2E-20 7.4E-25 198.8 12.4 218 3-226 326-556 (606)
51 2xwt_C Thyrotropin receptor; s 99.8 1E-19 3.4E-24 170.7 15.1 195 5-206 31-238 (239)
52 1wwl_A Monocyte differentiatio 99.8 1E-20 3.5E-25 184.9 8.5 221 4-233 42-291 (312)
53 3rfs_A Internalin B, repeat mo 99.8 3.3E-20 1.1E-24 177.7 11.4 203 25-234 35-241 (272)
54 3rfs_A Internalin B, repeat mo 99.8 1.8E-19 6E-24 172.6 16.4 204 3-217 39-245 (272)
55 1h6u_A Internalin H; cell adhe 99.8 1E-19 3.5E-24 177.6 14.7 191 26-226 36-228 (308)
56 3oja_A Leucine-rich immune mol 99.8 3.4E-20 1.2E-24 192.4 11.9 212 3-226 32-248 (487)
57 1o6v_A Internalin A; bacterial 99.8 3.9E-19 1.3E-23 183.4 18.9 190 3-204 66-275 (466)
58 1jl5_A Outer protein YOPM; leu 99.8 1.8E-19 6.1E-24 185.4 16.3 192 31-241 91-282 (454)
59 3g06_A SSPH2 (leucine-rich rep 99.8 2.1E-18 7.1E-23 183.5 24.8 203 5-235 61-280 (622)
60 1o6v_A Internalin A; bacterial 99.8 6.5E-19 2.2E-23 181.7 19.6 210 2-226 153-364 (466)
61 3j0a_A TOLL-like receptor 5; m 99.8 6.6E-19 2.3E-23 194.7 20.6 111 2-113 45-160 (844)
62 4glp_A Monocyte differentiatio 99.8 8.4E-20 2.9E-24 178.2 11.2 192 30-225 90-304 (310)
63 1ziw_A TOLL-like receptor 3; i 99.8 1E-18 3.5E-23 188.4 20.6 226 4-233 328-577 (680)
64 2z62_A TOLL-like receptor 4, v 99.8 6.2E-19 2.1E-23 169.0 16.1 198 5-205 28-235 (276)
65 1ziw_A TOLL-like receptor 3; i 99.8 6.2E-19 2.1E-23 190.2 17.4 228 2-232 350-600 (680)
66 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.7E-18 6E-23 182.7 19.2 125 5-136 52-181 (562)
67 2z7x_B TOLL-like receptor 1, v 99.8 9.2E-19 3.1E-23 182.8 16.9 213 5-225 247-478 (520)
68 1jl5_A Outer protein YOPM; leu 99.8 4.9E-18 1.7E-22 174.6 21.7 197 5-225 91-287 (454)
69 2o6q_A Variable lymphocyte rec 99.8 3.9E-18 1.3E-22 163.0 19.2 176 5-184 37-218 (270)
70 3j0a_A TOLL-like receptor 5; m 99.8 4.2E-18 1.4E-22 188.3 22.0 235 5-243 266-554 (844)
71 3o53_A Protein LRIM1, AGAP0063 99.8 1.2E-19 3.9E-24 177.9 8.3 217 2-230 55-277 (317)
72 2z63_A TOLL-like receptor 4, v 99.8 7.9E-19 2.7E-23 185.1 15.3 217 2-225 279-504 (570)
73 3oja_A Leucine-rich immune mol 99.8 2.3E-19 7.8E-24 186.2 9.4 195 1-207 54-250 (487)
74 2z81_A CD282 antigen, TOLL-lik 99.8 2.3E-18 8E-23 180.8 16.9 195 5-205 5-207 (549)
75 1p9a_G Platelet glycoprotein I 99.8 4.4E-18 1.5E-22 164.6 16.1 176 4-184 30-208 (290)
76 2z63_A TOLL-like receptor 4, v 99.8 1.9E-18 6.4E-23 182.2 14.6 132 1-135 48-188 (570)
77 1h6t_A Internalin B; cell adhe 99.8 1.4E-18 4.7E-23 168.2 11.8 172 25-205 40-211 (291)
78 4g8a_A TOLL-like receptor 4; l 99.8 1E-17 3.5E-22 178.2 18.9 81 145-226 466-553 (635)
79 3g06_A SSPH2 (leucine-rich rep 99.8 2.2E-17 7.5E-22 175.6 21.3 196 3-225 79-294 (622)
80 3m19_A Variable lymphocyte rec 99.8 1.6E-17 5.6E-22 156.9 16.7 168 33-204 16-189 (251)
81 3cvr_A Invasion plasmid antige 99.8 1.1E-17 3.8E-22 175.9 16.9 181 5-210 59-246 (571)
82 3m19_A Variable lymphocyte rec 99.7 3.8E-17 1.3E-21 154.3 18.0 174 5-185 14-193 (251)
83 4glp_A Monocyte differentiatio 99.7 3.3E-18 1.1E-22 166.9 10.9 177 53-231 90-287 (310)
84 4ay9_X Follicle-stimulating ho 99.7 2.9E-17 9.8E-22 163.1 17.8 219 8-233 12-241 (350)
85 1h6t_A Internalin B; cell adhe 99.7 1.5E-17 5E-22 160.9 14.6 173 3-187 44-216 (291)
86 2ast_B S-phase kinase-associat 99.7 1.5E-19 5.3E-24 177.8 -0.1 213 7-225 49-282 (336)
87 4ay9_X Follicle-stimulating ho 99.7 4.8E-17 1.7E-21 161.4 17.3 213 5-223 30-254 (350)
88 2ast_B S-phase kinase-associat 99.7 5.9E-19 2E-23 173.7 3.1 194 32-228 48-260 (336)
89 1m9s_A Internalin B; cell inva 99.7 8.1E-18 2.8E-22 178.6 11.2 170 27-205 39-208 (605)
90 2ca6_A RAN GTPase-activating p 99.7 1.7E-19 5.7E-24 181.5 -2.1 222 3-225 30-313 (386)
91 4ezg_A Putative uncharacterize 99.7 3.6E-17 1.2E-21 148.7 12.7 150 51-205 41-192 (197)
92 4ezg_A Putative uncharacterize 99.7 2.5E-17 8.6E-22 149.8 10.4 153 28-184 41-194 (197)
93 2ca6_A RAN GTPase-activating p 99.7 1.1E-18 3.7E-23 175.6 0.5 204 1-206 56-315 (386)
94 1xeu_A Internalin C; cellular 99.7 2.3E-17 7.8E-22 157.2 7.5 167 29-205 17-183 (263)
95 1m9s_A Internalin B; cell inva 99.7 1.9E-16 6.5E-21 168.1 15.1 173 3-187 41-213 (605)
96 1xeu_A Internalin C; cellular 99.7 4E-17 1.4E-21 155.5 8.6 170 5-187 19-188 (263)
97 2o6s_A Variable lymphocyte rec 99.7 1.5E-15 5.2E-20 139.0 17.3 173 8-194 10-189 (208)
98 3cvr_A Invasion plasmid antige 99.7 1.1E-15 3.6E-20 160.9 17.0 171 32-226 60-241 (571)
99 2o6s_A Variable lymphocyte rec 99.6 2E-15 6.9E-20 138.1 15.6 170 34-213 10-184 (208)
100 3e6j_A Variable lymphocyte rec 99.6 1.3E-15 4.3E-20 142.0 14.3 144 58-204 23-169 (229)
101 1dce_A Protein (RAB geranylger 99.6 5E-19 1.7E-23 186.7 -10.3 186 3-205 347-544 (567)
102 2xot_A Amphoterin-induced prot 99.6 1.3E-15 4.5E-20 151.7 13.9 168 34-204 21-199 (361)
103 3goz_A Leucine-rich repeat-con 99.6 2.8E-17 9.5E-22 163.9 0.1 198 5-205 22-264 (362)
104 2v9t_B SLIT homolog 2 protein 99.6 4.5E-15 1.5E-19 137.4 14.5 148 34-184 14-165 (220)
105 2v9t_B SLIT homolog 2 protein 99.6 4.4E-15 1.5E-19 137.5 13.5 145 57-205 14-163 (220)
106 2v70_A SLIT-2, SLIT homolog 2 99.6 4.9E-15 1.7E-19 137.1 13.0 146 34-183 14-165 (220)
107 2v70_A SLIT-2, SLIT homolog 2 99.6 1E-14 3.4E-19 135.0 14.3 146 57-205 14-164 (220)
108 4g8a_A TOLL-like receptor 4; l 99.6 3.2E-15 1.1E-19 158.9 12.4 220 3-226 347-578 (635)
109 3e6j_A Variable lymphocyte rec 99.6 2.6E-14 8.8E-19 133.1 16.0 148 33-184 21-172 (229)
110 2xot_A Amphoterin-induced prot 99.6 8.9E-15 3.1E-19 145.7 13.3 169 8-184 21-202 (361)
111 2ell_A Acidic leucine-rich nuc 99.6 4.3E-15 1.5E-19 131.2 9.8 126 54-204 24-157 (168)
112 1z7x_W Ribonuclease inhibitor; 99.6 3.1E-17 1.1E-21 168.3 -5.9 218 5-225 3-266 (461)
113 4b8c_D Glucose-repressible alc 99.6 1.2E-15 4.2E-20 165.5 5.6 189 5-204 173-369 (727)
114 2ell_A Acidic leucine-rich nuc 99.6 1.2E-14 4.2E-19 128.3 10.6 130 99-232 22-163 (168)
115 1z7x_W Ribonuclease inhibitor; 99.6 1.2E-16 4.1E-21 163.9 -3.3 220 4-226 141-409 (461)
116 1dce_A Protein (RAB geranylger 99.5 1.1E-16 3.9E-21 168.6 -4.3 172 51-232 346-549 (567)
117 3goz_A Leucine-rich repeat-con 99.5 9.6E-16 3.3E-20 152.7 2.4 214 9-226 2-264 (362)
118 2je0_A Acidic leucine-rich nuc 99.5 1.9E-14 6.3E-19 124.4 7.7 126 77-203 17-149 (149)
119 3ogk_B Coronatine-insensitive 99.5 7.5E-16 2.6E-20 163.1 -2.6 173 52-224 162-351 (592)
120 1a9n_A U2A', U2A'; complex (nu 99.5 1.3E-13 4.3E-18 122.8 8.7 102 102-205 43-151 (176)
121 4b8c_D Glucose-repressible alc 99.5 3.1E-14 1E-18 154.5 5.4 190 30-225 172-369 (727)
122 2je0_A Acidic leucine-rich nuc 99.4 5.1E-14 1.7E-18 121.7 5.3 122 55-179 18-148 (149)
123 3ogk_B Coronatine-insensitive 99.4 6.1E-15 2.1E-19 156.1 -1.0 195 7-203 140-351 (592)
124 1a9n_A U2A', U2A'; complex (nu 99.4 9.6E-14 3.3E-18 123.6 6.4 129 53-185 18-154 (176)
125 1w8a_A SLIT protein; signaling 99.4 7.5E-13 2.6E-17 119.6 11.8 124 34-160 11-138 (192)
126 1w8a_A SLIT protein; signaling 99.4 9E-13 3.1E-17 119.1 11.6 125 57-184 11-139 (192)
127 2p1m_B Transport inhibitor res 99.4 7.1E-15 2.4E-19 155.5 -3.3 198 3-203 103-347 (594)
128 2p1m_B Transport inhibitor res 99.4 2.2E-15 7.7E-20 159.4 -7.7 221 3-223 64-346 (594)
129 2wfh_A SLIT homolog 2 protein 99.4 1.8E-12 6.3E-17 117.2 12.2 123 58-183 14-138 (193)
130 2o6r_A Variable lymphocyte rec 99.4 6.9E-12 2.3E-16 111.5 13.5 124 57-184 10-137 (177)
131 2wfh_A SLIT homolog 2 protein 99.4 6.4E-12 2.2E-16 113.6 13.4 124 34-161 13-139 (193)
132 1ds9_A Outer arm dynein; leuci 99.3 2.2E-14 7.5E-19 130.3 -6.2 116 65-184 36-153 (198)
133 3sb4_A Hypothetical leucine ri 99.3 7.9E-12 2.7E-16 122.6 10.8 77 4-84 48-155 (329)
134 2o6r_A Variable lymphocyte rec 99.3 8.6E-11 2.9E-15 104.3 14.4 125 34-162 10-138 (177)
135 1ds9_A Outer arm dynein; leuci 99.2 4.2E-14 1.5E-18 128.4 -7.9 128 50-183 44-184 (198)
136 2r9u_A Variable lymphocyte rec 99.1 1.8E-10 6E-15 102.3 9.7 102 80-185 15-119 (174)
137 2r9u_A Variable lymphocyte rec 99.1 2.2E-10 7.4E-15 101.7 10.3 106 57-165 15-122 (174)
138 3sb4_A Hypothetical leucine ri 99.1 3.1E-11 1.1E-15 118.3 4.9 73 147-222 225-304 (329)
139 3g39_A Variable lymphocyte rec 99.1 1.9E-10 6.6E-15 101.6 9.2 102 79-184 11-115 (170)
140 3g39_A Variable lymphocyte rec 99.1 6.7E-10 2.3E-14 98.1 11.9 105 56-163 11-117 (170)
141 4fdw_A Leucine rich hypothetic 98.9 1.9E-08 6.6E-13 101.2 16.7 206 6-225 136-355 (401)
142 2ifg_A High affinity nerve gro 98.8 1E-08 3.5E-13 100.8 10.6 82 37-118 14-97 (347)
143 2ifg_A High affinity nerve gro 98.8 6.9E-09 2.3E-13 102.1 9.1 102 58-161 12-116 (347)
144 4fdw_A Leucine rich hypothetic 98.8 7.3E-08 2.5E-12 96.9 16.4 188 6-204 158-355 (401)
145 3un9_A NLR family member X1; l 98.8 2E-10 6.8E-15 114.6 -2.6 152 53-205 71-250 (372)
146 3un9_A NLR family member X1; l 98.8 9.1E-11 3.1E-15 117.1 -5.4 154 30-185 71-253 (372)
147 2ra8_A Uncharacterized protein 98.7 6E-09 2.1E-13 103.3 3.2 59 146-204 250-317 (362)
148 2ra8_A Uncharacterized protein 98.6 2.4E-08 8.2E-13 99.0 5.3 37 147-183 278-319 (362)
149 4fs7_A Uncharacterized protein 98.2 1E-05 3.6E-10 80.8 12.7 102 97-203 249-352 (394)
150 1io0_A Tropomodulin; LRR prote 98.1 5E-07 1.7E-11 80.7 1.2 59 146-204 91-161 (185)
151 3e4g_A ATP synthase subunit S, 98.1 1.2E-06 4E-11 77.2 2.2 81 31-112 61-150 (176)
152 1io0_A Tropomodulin; LRR prote 98.0 9.8E-07 3.3E-11 78.7 1.1 111 73-184 32-164 (185)
153 3e4g_A ATP synthase subunit S, 98.0 5.4E-06 1.9E-10 72.9 4.7 36 172-208 115-153 (176)
154 4fs7_A Uncharacterized protein 97.9 9.3E-05 3.2E-09 73.8 13.7 56 2-62 68-125 (394)
155 4gt6_A Cell surface protein; l 97.9 0.00026 8.8E-09 70.6 16.8 76 6-85 65-145 (394)
156 4gt6_A Cell surface protein; l 97.8 0.00034 1.2E-08 69.7 16.0 86 120-211 261-349 (394)
157 4h09_A Hypothetical leucine ri 97.4 0.0082 2.8E-07 59.0 18.5 57 145-202 260-318 (379)
158 3rw6_A Nuclear RNA export fact 97.4 0.00011 3.8E-09 69.1 4.3 58 147-205 169-231 (267)
159 3rw6_A Nuclear RNA export fact 97.4 7E-05 2.4E-09 70.5 2.8 78 52-131 168-258 (267)
160 4h09_A Hypothetical leucine ri 96.6 0.025 8.7E-07 55.5 14.0 173 24-202 151-341 (379)
161 1pgv_A TMD-1, tropomodulin TMD 95.9 0.0023 8E-08 57.1 1.5 15 189-203 121-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 95.4 0.0064 2.2E-07 54.2 2.4 84 97-181 37-136 (197)
163 3rfe_A Platelet glycoprotein I 95.1 0.02 6.8E-07 47.4 4.4 51 152-204 12-65 (130)
164 3rfe_A Platelet glycoprotein I 93.1 0.13 4.4E-06 42.4 5.4 32 103-134 33-65 (130)
165 2lz0_A Uncharacterized protein 29.6 73 0.0025 24.2 4.7 37 25-63 14-52 (100)
166 3ukw_C Bimax1 peptide; arm rep 26.5 24 0.00081 19.4 0.9 14 448-461 13-26 (28)
167 2lz0_A Uncharacterized protein 22.1 1E+02 0.0035 23.3 4.3 36 73-110 16-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.7e-25 Score=220.66 Aligned_cols=206 Identities=27% Similarity=0.408 Sum_probs=184.1
Q ss_pred CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450 4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 82 (463)
.++++.|+|++ +.++.+ |..+.++++|++|+|++|. +..+|. ++.+++|++|++++|.++.+|..++.+++|++|
T Consensus 80 ~~~l~~L~L~~-n~l~~l--p~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRS-VPLPQF--PDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEES-SCCSSC--CSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred ccceeEEEccC-CCchhc--ChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 47899999999 567788 7788899999999999964 558887 899999999999999999999999999999999
Q ss_pred eeecCCCCCccchhcCC---------CCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEE
Q 012450 83 NLGDCKNLKTLPSSLCK---------LKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYL 153 (463)
Q Consensus 83 ~l~~c~~l~~lp~~l~~---------l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L 153 (463)
++++|..++.+|..+.. +++|++|++++|.++.+|..++.+++|++|++++|. ++.+|..+..+++|+.|
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEE
Confidence 99999999999887654 999999999999999999999999999999999987 55677778999999999
Q ss_pred EeeCCCCCC-cccccCCcccccccccccccc-cccchhhhCCCCccEeccccccccccCCCCC
Q 012450 154 YLTDCAITE-LPESLGLLSSLEELYLERNNF-ERIPESIIRLSKLSSLLVSYCERLQSLPKLP 214 (463)
Q Consensus 154 ~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~ 214 (463)
++++|.+.+ +|..++.+++|+.|+|++|++ ..+|..+.++++|+.|+|++|..++.+|...
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 999998776 888899999999999999876 5788889999999999999999988888643
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=2.2e-24 Score=211.20 Aligned_cols=219 Identities=17% Similarity=0.245 Sum_probs=158.8
Q ss_pred CCcceeecccccCcC--CCCCcccccCCcCccEEeeec-CCCCCCCCC-CCCCCCccEEEeeccCCC-ccCccccCCCCc
Q 012450 5 GKLNQIIMAACNIFT--KTPNPSLIQHLNKLVILNLSG-CSKLKSLPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSRL 79 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~--~~~~~~~~~~l~~L~~L~L~~-c~~l~~lp~-l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L 79 (463)
.+++.|+|+++..-. .+ +..+.++++|++|++++ +.....+|. ++.+++|++|++++|.++ .+|..+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~--~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPI--PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEEC--CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCccc--ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 578888888855444 56 67788888888888885 444456776 788888888888888887 677778888888
Q ss_pred cEEeeecCCCCCccchhcCCCCCCcEEEEECCCCc-cCCccCCCCC-CccEEecCCCCCCCcCcccCCCCCCccEEEeeC
Q 012450 80 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLS-ALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTD 157 (463)
Q Consensus 80 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~ 157 (463)
++|++++|.....+|..+..+++|++|++++|.++ .+|..+..+. +|++|++++|.....+|..+..++ |+.|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 88888887665577878888888888888888887 7787787777 888888888765445666666665 77777777
Q ss_pred CCCCC-cccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCC---CCCccEeeccCcc
Q 012450 158 CAITE-LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCT 226 (463)
Q Consensus 158 ~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c~ 226 (463)
|.+.+ .|..+..+++|+.|++++|.++..+..+..+++|+.|++++|.....+|.. .++|+.|+++++.
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 77664 556667777777777777777654445666777777777777544455532 2466677776653
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=5.8e-23 Score=202.51 Aligned_cols=198 Identities=27% Similarity=0.419 Sum_probs=178.3
Q ss_pred CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeecc-CCCccCccccC----
Q 012450 2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGT-AIEELPSSIGC---- 75 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~-~i~~lp~~i~~---- 75 (463)
.++++|++|+|++| .++.+ |..++.+++|++|+|++| .+..+|. ++.+++|++|++++| .+..+|..+..
T Consensus 101 ~~l~~L~~L~L~~n-~l~~l--p~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 101 FRLSHLQHMTIDAA-GLMEL--PDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp GGGTTCSEEEEESS-CCCCC--CSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred hhCCCCCEEECCCC-Cccch--hHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 45789999999995 56677 788999999999999996 5668887 999999999999996 45578877654
Q ss_pred -----CCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCc
Q 012450 76 -----LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSL 150 (463)
Q Consensus 76 -----l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L 150 (463)
+++|++|++++| .++.+|..+.++++|++|++++|.++.+|..+..+++|++|++++|.....+|..+.++++|
T Consensus 177 ~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp CCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred hhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 999999999997 45689999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeeCCCCCC-cccccCCcccccccccccccc-cccchhhhCCCCccEeccccc
Q 012450 151 TYLYLTDCAITE-LPESLGLLSSLEELYLERNNF-ERIPESIIRLSKLSSLLVSYC 204 (463)
Q Consensus 151 ~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~~c 204 (463)
+.|+|++|.+.+ +|..+..+++|++|+|++|++ ..+|..+.++++|+.+++..+
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 999999998776 898999999999999999886 589999999999999998865
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2.7e-23 Score=203.46 Aligned_cols=226 Identities=18% Similarity=0.245 Sum_probs=180.2
Q ss_pred CCCCCcceeecccccCcC-CCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCC-ccCccccCCCC
Q 012450 2 QHHGKLNQIIMAACNIFT-KTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSR 78 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~l~-~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~ 78 (463)
+++++|++|+|++++.+. .+ |..+.++++|++|++++|...+.+|. +..+++|++|++++|.++ .+|..+..+++
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPI--PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCC--CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred hCCCCCCeeeCCCCCcccccC--ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 467889999998644444 55 77888899999999998765557777 888899999999998888 67888888999
Q ss_pred ccEEeeecCCCCCccchhcCCCC-CCcEEEEECCCCc-cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEee
Q 012450 79 LLELNLGDCKNLKTLPSSLCKLK-SLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLT 156 (463)
Q Consensus 79 L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~ 156 (463)
|++|++++|.....+|..+..++ +|+.|++++|.++ .+|..+..+. |++|++++|......|..+..+++|+.|+++
T Consensus 151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence 99999998765557888888887 8999999999887 6777787777 9999999887555677778888899999999
Q ss_pred CCCCCCcccccCCccccccccccccccc-ccchhhhCCCCccEeccccccccccCCCC--CCCccEeeccCcccccc
Q 012450 157 DCAITELPESLGLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQHCTTLES 230 (463)
Q Consensus 157 ~~~l~~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~l~~l--~~~L~~L~i~~c~~L~~ 230 (463)
+|.++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.....+|.. .++|+.+++.+.+.+..
T Consensus 230 ~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp SSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred CCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 9988875555788889999999999887 78888888999999999998766677764 24566666666654443
No 5
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=2.1e-22 Score=202.89 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=160.0
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCC-C-CCCCCCccEEEeeccCCCccCcc-ccCCCCc
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAIEELPSS-IGCLSRL 79 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp-~-l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L 79 (463)
.+++|++|+|++| .++.++ +..+..+++|++|++++|. ++.++ . ++.+++|++|++++|.++.+|.. +..+++|
T Consensus 67 ~l~~L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 143 (390)
T 3o6n_A 67 SFRQVELLNLNDL-QIEEID-TYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143 (390)
T ss_dssp HCCCCSEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCcEEECCCC-cccccC-hhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCC
Confidence 4677888888874 355552 4567778888888888764 44444 3 67788888888888888877776 3778888
Q ss_pred cEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCC-----------------------------------
Q 012450 80 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLS----------------------------------- 124 (463)
Q Consensus 80 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~----------------------------------- 124 (463)
++|++++|......|..+..+++|+.|++++|.++.++ +..++
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 221 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence 88888886544444556777888888888887776543 11222
Q ss_pred -----CccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC-cccccCCcccccccccccccccccchhhhCCCCccE
Q 012450 125 -----ALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSS 198 (463)
Q Consensus 125 -----~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 198 (463)
+|+.|++++|. ++..+ .+..+++|+.|++++|.+.+ .|..+..+++|++|++++|+++.+|..+..+++|+.
T Consensus 222 ~~~~~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~ 299 (390)
T 3o6n_A 222 GPVNVELTILKLQHNN-LTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV 299 (390)
T ss_dssp CCCCSSCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCE
T ss_pred ccccccccEEECCCCC-CcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCE
Confidence 34444444443 22232 36678899999999999988 477889999999999999999999888888999999
Q ss_pred eccccccccccCCCC---CCCccEeeccCcccccccc
Q 012450 199 LLVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLS 232 (463)
Q Consensus 199 L~L~~c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~ 232 (463)
|++++| .++.+|.. .++|+.|+++++. ++.++
T Consensus 300 L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~ 334 (390)
T 3o6n_A 300 LDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK 334 (390)
T ss_dssp EECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred EECCCC-cceecCccccccCcCCEEECCCCc-cceeC
Confidence 999999 45566542 3689999998875 55554
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.4e-22 Score=221.96 Aligned_cols=222 Identities=20% Similarity=0.262 Sum_probs=123.8
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCC-ccCccccCCCCcc
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSRLL 80 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~ 80 (463)
++++|++|+|++|.....+ |..+..+++|+.|++++|...+.+|. +..+++|++|++++|.++ .+|..+..+++|+
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp GCTTCCEEECCSSEEESCC--CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred cCCCCCEEECcCCcccCcc--cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 3445555555554333333 44555555555555555544444554 555556666666666555 4455555666666
Q ss_pred EEeeecCCCCCccchhcCCCCCCcEEEEECCCCc-cCCccCCCCCCccEEecCCCCCCCcCcc-----------------
Q 012450 81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPSPIECLSALCVLDLGDCKSLKSLKL----------------- 142 (463)
Q Consensus 81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~l~~----------------- 142 (463)
+|++++|.....+|..++.+++|+.|++++|.++ .+|..++.+++|+.|++++|.....+|.
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence 6666665554455655666666666666666655 4555566666666666665543222221
Q ss_pred -----------------------------------------------------cCCCCCCccEEEeeCCCCCC-cccccC
Q 012450 143 -----------------------------------------------------PFDGLYSLTYLYLTDCAITE-LPESLG 168 (463)
Q Consensus 143 -----------------------------------------------------~l~~l~~L~~L~L~~~~l~~-~p~~l~ 168 (463)
.+..+++|+.|+|++|++++ +|..++
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 653 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh
Confidence 12234456666666666654 566666
Q ss_pred Cccccccccccccccc-ccchhhhCCCCccEeccccccccccCCCC---CCCccEeeccCcc
Q 012450 169 LLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCT 226 (463)
Q Consensus 169 ~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c~ 226 (463)
.+++|+.|+|++|+++ .+|..++++++|+.|+|++|...+.+|.. .++|+.|+++++.
T Consensus 654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 6666666666666665 56666666666666666666555555542 2345566665554
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.3e-22 Score=212.88 Aligned_cols=221 Identities=14% Similarity=0.157 Sum_probs=164.9
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCCc
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRL 79 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L 79 (463)
++++|++|+|++|. ++.++ +..+..+++|++|+|++|. +..+|. ++.+++|++|+|++|.++.+|.. ++.+++|
T Consensus 73 ~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 73 SFRQVELLNLNDLQ-IEEID-TYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp HCCCCSEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCCcEEECCCCC-CCCCC-hHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 46788888888854 55553 4578888888888888865 555554 68888888888888888888776 4788888
Q ss_pred cEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCC-----------------------------------
Q 012450 80 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLS----------------------------------- 124 (463)
Q Consensus 80 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~----------------------------------- 124 (463)
++|++++|......|..+..+++|+.|++++|.++.++. +.++
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 227 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG--GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh--hhhhhhhhhhcccCccccccCCchhheeeccCCcccccc
Confidence 888888876555556678888888888888888776541 2222
Q ss_pred -----CccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC-cccccCCcccccccccccccccccchhhhCCCCccE
Q 012450 125 -----ALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSS 198 (463)
Q Consensus 125 -----~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 198 (463)
+|+.|++++|. ++.. ..+..+++|+.|+|++|.+.+ .|..++.+++|+.|+|++|.++.+|..+..+++|+.
T Consensus 228 ~~~~~~L~~L~L~~n~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 305 (597)
T 3oja_B 228 GPVNVELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV 305 (597)
T ss_dssp CSCCSCCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCE
T ss_pred cccCCCCCEEECCCCC-CCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcE
Confidence 23444444433 2222 236778899999999999988 477889999999999999999999988888999999
Q ss_pred eccccccccccCCCC---CCCccEeeccCcccccccc
Q 012450 199 LLVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLS 232 (463)
Q Consensus 199 L~L~~c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~ 232 (463)
|+|++|. +..+|.. .++|+.|++++|. +..++
T Consensus 306 L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~ 340 (597)
T 3oja_B 306 LDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK 340 (597)
T ss_dssp EECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC
T ss_pred EECCCCC-CCccCcccccCCCCCEEECCCCC-CCCcC
Confidence 9999984 4466542 3689999998875 44443
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=2.3e-22 Score=220.16 Aligned_cols=225 Identities=20% Similarity=0.243 Sum_probs=196.3
Q ss_pred CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCC-ccCccccCCCCc
Q 012450 2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE-ELPSSIGCLSRL 79 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L 79 (463)
.++++|++|+|++|...+.+ |..+..+++|++|++++|...+.+|. +..+++|++|++++|.++ .+|..++.+++|
T Consensus 439 ~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 516 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hcCCCCCEEECCCCcccCcC--CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence 46789999999998766677 78899999999999999877778887 899999999999999998 789999999999
Q ss_pred cEEeeecCCCCCccchhcCCCCCCcEEEEECCCCc-cCCc----------------------------------------
Q 012450 80 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE-ELPS---------------------------------------- 118 (463)
Q Consensus 80 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~---------------------------------------- 118 (463)
++|++++|.....+|..++++++|+.|++++|.++ .+|.
T Consensus 517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (768)
T 3rgz_A 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596 (768)
T ss_dssp CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence 99999999877789999999999999999998775 4443
Q ss_pred ------------------------------cCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC-ccccc
Q 012450 119 ------------------------------PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESL 167 (463)
Q Consensus 119 ------------------------------~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~-~p~~l 167 (463)
.+..+++|+.|++++|.....+|..++++++|+.|+|++|.+++ +|..+
T Consensus 597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l 676 (768)
T 3rgz_A 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676 (768)
T ss_dssp TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH
Confidence 34456789999999999777899999999999999999999995 99999
Q ss_pred CCccccccccccccccc-ccchhhhCCCCccEeccccccccccCCCC--CCCccEeeccCcccc
Q 012450 168 GLLSSLEELYLERNNFE-RIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQHCTTL 228 (463)
Q Consensus 168 ~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~l~~l--~~~L~~L~i~~c~~L 228 (463)
+.+++|+.|+|++|+++ .+|..+..+++|+.|++++|+..+.+|.. +.++......+++.|
T Consensus 677 ~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence 99999999999999997 79999999999999999999888888864 334444445555544
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.8e-21 Score=192.63 Aligned_cols=217 Identities=20% Similarity=0.331 Sum_probs=168.8
Q ss_pred CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccE
Q 012450 2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLE 81 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 81 (463)
+.+++|++|++++| .++++ +. +..+++|++|++++| .++.++.+..+++|++|++++|.++.++. +..+++|++
T Consensus 63 ~~~~~L~~L~l~~n-~i~~~--~~-~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 63 EYLTNLEYLNLNGN-QITDI--SP-LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp GGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred hhcCCccEEEccCC-ccccc--hh-hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 45778888888875 56666 33 778888888888886 56667778888888888888888887766 778888888
Q ss_pred EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCC
Q 012450 82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT 161 (463)
Q Consensus 82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~ 161 (463)
|++++|.....++. +..+++|+.|++++|.+..++. +..+++|++|++++|. +..++. +..+++|+.|++++|.+.
T Consensus 137 L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 137 LNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp EECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred EECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCCCC
Confidence 88888876666554 7788888888888888887765 7788888899888876 555555 777888888888888888
Q ss_pred CcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCC--CCCCccEeeccCcccccccc
Q 012450 162 ELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK--LPCNLYWLDAQHCTTLESLS 232 (463)
Q Consensus 162 ~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~--l~~~L~~L~i~~c~~L~~l~ 232 (463)
+++. +..+++|++|++++|.++.++. +..+++|+.|++++| .++.++. ..++|+.|++++| .++.++
T Consensus 213 ~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~ 281 (347)
T 4fmz_A 213 DITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDIS 281 (347)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG
T ss_pred CCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCCh
Confidence 8655 7788899999999999888876 888999999999988 4455543 2468899999887 455543
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=1.1e-22 Score=218.14 Aligned_cols=206 Identities=17% Similarity=0.215 Sum_probs=157.3
Q ss_pred cccccCCcCccEEeeecCCCCCC------------------CCC-CC--CCCCccEEEeeccCCC-ccCccccCCCCccE
Q 012450 24 PSLIQHLNKLVILNLSGCSKLKS------------------LPE-IS--SAGNIEKILLDGTAIE-ELPSSIGCLSRLLE 81 (463)
Q Consensus 24 ~~~~~~l~~L~~L~L~~c~~l~~------------------lp~-l~--~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~ 81 (463)
|..++++++|++|+|++|. +.. +|. ++ .+++|++|++++|.+. .+|..++++++|++
T Consensus 199 p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp CGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 5678888888888888875 554 777 77 8888888888888765 67888888888888
Q ss_pred EeeecCCCCC--ccchhcCCC------CCCcEEEEECCCCccCCc--cCCCCCCccEEecCCCCCCCcCcccCCCCCCcc
Q 012450 82 LNLGDCKNLK--TLPSSLCKL------KSLEEICLTGSAIEELPS--PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLT 151 (463)
Q Consensus 82 L~l~~c~~l~--~lp~~l~~l------~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~ 151 (463)
|++++|..+. .+|..++.+ ++|++|++++|.++.+|. .++.+++|++|++++|.....+| .+..+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 8888876344 578777765 888888888888888888 78888888888888877444777 677888888
Q ss_pred EEEeeCCCCCCcccccCCccc-ccccccccccccccchhhhCCC--CccEeccccccccccCCCCC----------CCcc
Q 012450 152 YLYLTDCAITELPESLGLLSS-LEELYLERNNFERIPESIIRLS--KLSSLLVSYCERLQSLPKLP----------CNLY 218 (463)
Q Consensus 152 ~L~L~~~~l~~~p~~l~~l~~-L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~L~~c~~l~~l~~l~----------~~L~ 218 (463)
.|++++|.+..+|..+..+++ |++|++++|.++.+|..+..++ +|+.|++++|.....+|... ++|+
T Consensus 357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp EEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred EEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 888888888888888888888 8888888888888887666544 78888888876555444321 3677
Q ss_pred EeeccCcccccccc
Q 012450 219 WLDAQHCTTLESLS 232 (463)
Q Consensus 219 ~L~i~~c~~L~~l~ 232 (463)
.|+++++ .++.++
T Consensus 437 ~L~Ls~N-~l~~lp 449 (636)
T 4eco_A 437 SINLSNN-QISKFP 449 (636)
T ss_dssp EEECCSS-CCCSCC
T ss_pred EEECcCC-ccCcCC
Confidence 7777665 334444
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=3.7e-21 Score=185.36 Aligned_cols=211 Identities=24% Similarity=0.334 Sum_probs=167.4
Q ss_pred ceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCcc-CccccCCCCccEEee
Q 012450 8 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLELNL 84 (463)
Q Consensus 8 ~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l 84 (463)
+.++.++ ..++.+ |..+ .++|+.|++++| .++.++. +..+++|++|++++|.++.+ |..+..+++|++|++
T Consensus 14 ~~~~c~~-~~l~~i--p~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAV--PVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCS-SCCSSC--CTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEcCc-CCcccC--CcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 4677776 667777 4433 578999999985 5666664 88899999999999999877 667889999999999
Q ss_pred ecCCCCCcc-chhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC
Q 012450 85 GDCKNLKTL-PSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE 162 (463)
Q Consensus 85 ~~c~~l~~l-p~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~ 162 (463)
++|..++.+ |..+..+++|++|++++|.++.+ |..+..+++|++|++++|......+..+..+++|+.|++++|.+++
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 998756666 67788999999999999999877 5567889999999999987443333447889999999999999998
Q ss_pred ccc-ccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCCC----CCCCccEeeccCc
Q 012450 163 LPE-SLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK----LPCNLYWLDAQHC 225 (463)
Q Consensus 163 ~p~-~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~----l~~~L~~L~i~~c 225 (463)
+|. .+..+++|++|++++|.++.+ |..+..+++|+.|++++|. ++.++. -.++|+.|+++++
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSS
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCC
Confidence 765 488899999999999999865 7788899999999999984 444442 2345666666654
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=8.1e-22 Score=191.92 Aligned_cols=172 Identities=25% Similarity=0.298 Sum_probs=78.8
Q ss_pred cCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCcc---CccccCCCCccEEeeecCCCCCccchhcCCCCCCcE
Q 012450 31 NKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL---PSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEE 105 (463)
Q Consensus 31 ~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 105 (463)
++|++|++++| .++.+|. +..+++|++|++++|.++.+ +..+..+++|++|++++|. +..+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCE
Confidence 34555555543 2334443 34455555555555544432 2333344455555554432 2334444444555555
Q ss_pred EEEECCCCccCCc--cCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC--cccccCCcccccccccccc
Q 012450 106 ICLTGSAIEELPS--PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE--LPESLGLLSSLEELYLERN 181 (463)
Q Consensus 106 L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~--~p~~l~~l~~L~~L~Ls~n 181 (463)
|++++|.++.++. .+..+++|++|++++|......+..+.++++|+.|++++|.+.+ +|..+..+++|++|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 5555554444432 34444555555555444333333334444455555555554443 3444444455555555555
Q ss_pred ccccc-chhhhCCCCccEeccccc
Q 012450 182 NFERI-PESIIRLSKLSSLLVSYC 204 (463)
Q Consensus 182 ~l~~l-p~~l~~l~~L~~L~L~~c 204 (463)
.++.+ |..+..+++|+.|++++|
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHN 209 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcCCcCHHHhcCCCCCCEEECCCC
Confidence 44433 334444445555555444
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=7.7e-21 Score=187.06 Aligned_cols=220 Identities=18% Similarity=0.202 Sum_probs=171.6
Q ss_pred CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450 4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 82 (463)
.++|++|+|++| .++.++ +..+.++++|++|++++|......|. ++.+++|++|++++|.++++|..+. ++|++|
T Consensus 51 ~~~l~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L 126 (330)
T 1xku_A 51 PPDTALLDLQNN-KITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQEL 126 (330)
T ss_dssp CTTCCEEECCSS-CCCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEE
T ss_pred CCCCeEEECCCC-cCCEeC-hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEE
Confidence 368999999995 566663 45788999999999999754433365 8899999999999999999987764 789999
Q ss_pred eeecCCCCCccchhcCCCCCCcEEEEECCCCc---cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCC
Q 012450 83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE---ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCA 159 (463)
Q Consensus 83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~ 159 (463)
++++|......+..+.++++|+.|++++|.++ ..+..+..+++|++|++++|. ++.+|..+. ++|+.|++++|.
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~ 203 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGNK 203 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTSC
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCCCc
Confidence 99987655444566888999999999999886 345677888999999999876 556665443 788999999998
Q ss_pred CCCc-ccccCCcccccccccccccccccch-hhhCCCCccEeccccccccccCCCC---CCCccEeeccCcccccccc
Q 012450 160 ITEL-PESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLS 232 (463)
Q Consensus 160 l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~ 232 (463)
+.++ |..+..+++|+.|++++|.++.++. .+..+++|+.|++++| .++.+|.. .++|+.|+++++ .++.++
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~ 279 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIG 279 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccC
Confidence 8874 6778888899999999998876654 6788889999999988 45566642 367888888876 355544
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=4.2e-21 Score=196.70 Aligned_cols=214 Identities=21% Similarity=0.323 Sum_probs=175.9
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCc-cccCCCCccE
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLE 81 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~ 81 (463)
++++.|+|++| .++.++ +..+.++++|++|+|++| .+..++. +..+++|++|+|++|.++.++. .+..+++|++
T Consensus 64 ~~l~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIK-VNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSC-CCCEEC-TTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCCcEEEccCC-cCCeeC-HHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 57999999995 566653 578899999999999996 4666653 8899999999999999998887 4889999999
Q ss_pred EeeecCCCCCccc-hhcCCCCCCcEEEEEC-CCCccCCc-cCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCC
Q 012450 82 LNLGDCKNLKTLP-SSLCKLKSLEEICLTG-SAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC 158 (463)
Q Consensus 82 L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~ 158 (463)
|++++|. +..++ ..+.++++|+.|++++ +.+..++. .+..+++|++|++++|. ++.+|. +..+++|+.|+|++|
T Consensus 141 L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 141 LWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSGN 217 (440)
T ss_dssp EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-CTTCSSCCEEECTTS
T ss_pred eeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-cCCCcccCEEECCCC
Confidence 9999975 45554 4688999999999998 56666665 58899999999999986 677775 889999999999999
Q ss_pred CCCCc-ccccCCcccccccccccccccccc-hhhhCCCCccEeccccccccccCCC-C---CCCccEeeccCc
Q 012450 159 AITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPK-L---PCNLYWLDAQHC 225 (463)
Q Consensus 159 ~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~~-l---~~~L~~L~i~~c 225 (463)
.++++ |..+..+++|+.|+|++|+++.++ ..+.++++|+.|+|++| .++.++. . .++|+.|+++++
T Consensus 218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence 99985 778899999999999999998664 56888999999999998 4555543 1 245666666553
No 15
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=5.8e-21 Score=188.19 Aligned_cols=210 Identities=20% Similarity=0.277 Sum_probs=123.6
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCC-CC-CCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-p~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 82 (463)
++|++|+|++|. ++.++ +..+.++++|++|++++|. ++.+ |. ++.+++|++|++++|.++.+|..+. ++|++|
T Consensus 54 ~~l~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELR-KDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVEL 128 (332)
T ss_dssp TTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEE
T ss_pred CCCeEEECCCCc-CCccC-HhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEE
Confidence 567888888743 55552 4567778888888888764 4444 44 7778888888888888777776654 678888
Q ss_pred eeecCCCCCccc-hhcCCCCCCcEEEEECCCCcc---CCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCC
Q 012450 83 NLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEE---LPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC 158 (463)
Q Consensus 83 ~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~---lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~ 158 (463)
++++|.. ..+| ..+.++++|+.|++++|.++. .+..+..+ +|++|++++|. ++.+|..+. ++|+.|++++|
T Consensus 129 ~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n 203 (332)
T 2ft3_A 129 RIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHN 203 (332)
T ss_dssp ECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSS
T ss_pred ECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCC
Confidence 8877643 3443 446777778888877777752 34444444 66666666554 334443222 45555555555
Q ss_pred CCCCcc-cccCCcccccccccccccccccch-hhhCCCCccEeccccccccccCCCC---CCCccEeeccCc
Q 012450 159 AITELP-ESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHC 225 (463)
Q Consensus 159 ~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c 225 (463)
.+.+++ ..+..+++|+.|++++|+++.++. .+..+++|+.|++++| .++.+|.. .++|+.|+++++
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC
Confidence 555532 344555555555555555544432 4455555555555555 23344331 234555555443
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=5.1e-21 Score=196.41 Aligned_cols=92 Identities=25% Similarity=0.185 Sum_probs=73.5
Q ss_pred cccCCCCCCccEEEeeCCCCCCc-ccccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCCC---CCC
Q 012450 141 KLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK---LPC 215 (463)
Q Consensus 141 ~~~l~~l~~L~~L~L~~~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~---l~~ 215 (463)
|..+..+++|+.|++++|.+.++ |..+..+++|++|++++|.++.+ |..+..+++|+.|++++|..-...|. -.+
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 44467789999999999999985 66888999999999999999876 56788999999999999964333343 236
Q ss_pred CccEeeccCccccccccc
Q 012450 216 NLYWLDAQHCTTLESLSG 233 (463)
Q Consensus 216 ~L~~L~i~~c~~L~~l~~ 233 (463)
+|++|+++++ .++.++.
T Consensus 372 ~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 372 NLKELALDTN-QLKSVPD 388 (455)
T ss_dssp TCCEEECCSS-CCSCCCT
T ss_pred cccEEECCCC-ccccCCH
Confidence 8999999886 4666554
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.5e-20 Score=185.01 Aligned_cols=218 Identities=23% Similarity=0.372 Sum_probs=175.8
Q ss_pred CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCcc-CccccCCCCccEE
Q 012450 6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLEL 82 (463)
Q Consensus 6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L 82 (463)
+++.+++++ ..++.+ |..+. ++|+.|++++| .++.++. ++.+++|++|++++|.++.+ |..+..+++|++|
T Consensus 32 ~l~~l~~~~-~~l~~l--p~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSD-LGLEKV--PKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTT-SCCCSC--CCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecC-CCcccc--CccCC--CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 788999988 467777 55443 78999999996 5666664 88999999999999999977 7778999999999
Q ss_pred eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCC--cCcccCCCCCCccEEEeeCCC
Q 012450 83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLK--SLKLPFDGLYSLTYLYLTDCA 159 (463)
Q Consensus 83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~--~l~~~l~~l~~L~~L~L~~~~ 159 (463)
++++|. ++.+|..+. ++|++|++++|.++.++. .+..+++|+.|++++|.... ..+..+.++++|+.|++++|.
T Consensus 106 ~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 999864 667877654 799999999999998765 47889999999999987532 445567889999999999999
Q ss_pred CCCcccccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCCC----CCCCccEeeccCcccccccccC
Q 012450 160 ITELPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK----LPCNLYWLDAQHCTTLESLSGL 234 (463)
Q Consensus 160 l~~~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~----l~~~L~~L~i~~c~~L~~l~~~ 234 (463)
+..+|..+. ++|++|++++|.++.+ |..+..+++|+.|++++|. ++.++. -.++|+.|+++++ .++.++..
T Consensus 183 l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~ 258 (330)
T 1xku_A 183 ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGG 258 (330)
T ss_dssp CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCTT
T ss_pred cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccCChh
Confidence 999887654 8999999999999866 5788899999999999985 333332 2368999999887 56677665
Q ss_pred CC
Q 012450 235 FS 236 (463)
Q Consensus 235 ~~ 236 (463)
+.
T Consensus 259 l~ 260 (330)
T 1xku_A 259 LA 260 (330)
T ss_dssp TT
T ss_pred hc
Confidence 44
No 18
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=1.2e-20 Score=194.36 Aligned_cols=167 Identities=19% Similarity=0.214 Sum_probs=103.2
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 82 (463)
.+++|++|++++| .++.+ + ++++++|++|++++| .++.+| ++.+++|++|++++|.++.++ ++.+++|++|
T Consensus 83 ~l~~L~~L~Ls~N-~l~~~--~--~~~l~~L~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L 153 (457)
T 3bz5_A 83 QNTNLTYLACDSN-KLTNL--D--VTPLTKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTEL 153 (457)
T ss_dssp TCTTCSEEECCSS-CCSCC--C--CTTCTTCCEEECCSS-CCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEE
T ss_pred cCCCCCEEECcCC-CCcee--e--cCCCCcCCEEECCCC-cCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEE
Confidence 3444444444442 23333 1 444555555555553 333333 455555555555555555543 4556666666
Q ss_pred eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC
Q 012450 83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE 162 (463)
Q Consensus 83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~ 162 (463)
++++|..++.+ .+..+++|+.|++++|.++.+| +..+++|+.|++++|. ++.++ +..+++|+.|++++|++++
T Consensus 154 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~-l~~~~--l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 154 DCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp ECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred ECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCc-CCeec--cccCCCCCEEECcCCcccc
Confidence 66665555544 3566777888888888777776 6777778888887765 44443 6677788888888888777
Q ss_pred cccccCCcccccccccccccccccc
Q 012450 163 LPESLGLLSSLEELYLERNNFERIP 187 (463)
Q Consensus 163 ~p~~l~~l~~L~~L~Ls~n~l~~lp 187 (463)
+| +..+++|+.|++++|+++.+|
T Consensus 227 ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 227 ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred cC--ccccCCCCEEEeeCCcCCCcC
Confidence 76 677777888888877776554
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1.7e-20 Score=194.02 Aligned_cols=227 Identities=22% Similarity=0.250 Sum_probs=141.0
Q ss_pred CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCcc-CccccCCCC
Q 012450 2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PSSIGCLSR 78 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~ 78 (463)
.++++|++|+|++| .++.+. +..+.++++|++|+|++| .++.+|. +..+++|++|++++|.++.+ +..+..+++
T Consensus 53 ~~l~~L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 53 ASFPHLEELELNEN-IVSAVE-PGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCCEEECCCC-ccCEeC-hhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 56778888888875 344442 566777788888888775 4566664 66777777777777777654 334666666
Q ss_pred ccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCc-------------------------cCCCCCCccEEecCC
Q 012450 79 LLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-------------------------PIECLSALCVLDLGD 133 (463)
Q Consensus 79 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-------------------------~i~~l~~L~~L~l~~ 133 (463)
|++|++++|......+..+.++++|+.|++++|.++.++. .+..+++|+.|++++
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 7777776654333334455556666666666665554443 344455555555555
Q ss_pred CCCCCcCcccCCCCCCccEEEeeCCCCCCcc-cccCCcccccccccccccccccc-hhhhCCCCccEeccccccccccCC
Q 012450 134 CKSLKSLKLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLP 211 (463)
Q Consensus 134 c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~ 211 (463)
|..+..++.......+|+.|++++|.++++| ..+..+++|+.|+|++|.++.++ ..+..+++|+.|++++|..-...|
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred CccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH
Confidence 5555555544444456777777777777665 35667777777777777776555 346677777777777774322222
Q ss_pred C---CCCCccEeeccCcccccccc
Q 012450 212 K---LPCNLYWLDAQHCTTLESLS 232 (463)
Q Consensus 212 ~---l~~~L~~L~i~~c~~L~~l~ 232 (463)
. -.++|+.|+++++ .++.++
T Consensus 290 ~~~~~l~~L~~L~L~~N-~l~~~~ 312 (477)
T 2id5_A 290 YAFRGLNYLRVLNVSGN-QLTTLE 312 (477)
T ss_dssp TTBTTCTTCCEEECCSS-CCSCCC
T ss_pred HHhcCcccCCEEECCCC-cCceeC
Confidence 2 1256788888776 444444
No 20
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=6e-21 Score=196.22 Aligned_cols=214 Identities=23% Similarity=0.323 Sum_probs=177.8
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCC-C-CCCCCCccEEEeeccCCCccCcc-ccCCCCccE
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLE 81 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp-~-l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~ 81 (463)
++|++|+|++| .++.+. +..+.++++|+.|+|++| .+..++ . +..+++|++|+|++|.++.+|.. +..+++|++
T Consensus 75 ~~l~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQ-ADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCccEEECcCC-cCceEC-HHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 57999999995 455553 678999999999999996 555555 3 88999999999999999988876 788999999
Q ss_pred EeeecCCCCCccc-hhcCCCCCCcEEEEEC-CCCccCCc-cCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCC
Q 012450 82 LNLGDCKNLKTLP-SSLCKLKSLEEICLTG-SAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC 158 (463)
Q Consensus 82 L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~ 158 (463)
|++++|. +..+| ..+.++++|+.|++++ +.+..++. .+..+++|++|++++|. ++.+|. +..+++|+.|+|++|
T Consensus 152 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 152 LWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN-LTPLVGLEELEMSGN 228 (452)
T ss_dssp EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC-CTTCTTCCEEECTTS
T ss_pred EECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc-ccccccccEEECcCC
Confidence 9999975 45555 4688999999999998 56777765 58899999999999986 666765 889999999999999
Q ss_pred CCCCc-ccccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCCC-C---CCCccEeeccCc
Q 012450 159 AITEL-PESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK-L---PCNLYWLDAQHC 225 (463)
Q Consensus 159 ~l~~~-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~-l---~~~L~~L~i~~c 225 (463)
.+.++ |..+..+++|+.|++++|+++.+ +..+..+++|+.|+|++| .++.++. . .++|+.|++.++
T Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence 99984 77899999999999999999866 567889999999999999 4555553 1 245666666554
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.3e-20 Score=193.81 Aligned_cols=218 Identities=28% Similarity=0.420 Sum_probs=180.6
Q ss_pred cceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCC-CC-CCCCCCccEEEeeccCCCccC-ccccCCCCccEEe
Q 012450 7 LNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIEELP-SSIGCLSRLLELN 83 (463)
Q Consensus 7 L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-p~-l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~ 83 (463)
...++.++ ..++.+ |..+. ++|+.|+|++| .++.+ |. +..+++|++|+|++|.++.++ ..+..+++|++|+
T Consensus 56 ~~~v~c~~-~~l~~i--P~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 56 FSKVVCTR-RGLSEV--PQGIP--SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SCEEECCS-SCCSSC--CSCCC--TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CcEEEECC-CCcCcc--CCCCC--CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence 45677666 678888 55553 79999999996 45555 44 899999999999999999776 5688999999999
Q ss_pred eecCCCCCccc-hhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCC
Q 012450 84 LGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAI 160 (463)
Q Consensus 84 l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l 160 (463)
+++|. +..+| ..+..+++|++|++++|.++.+|. .+..+++|++|++++|..++.++. .+.++++|+.|++++|.+
T Consensus 130 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 130 LFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp CCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 99975 55555 458889999999999999998876 678999999999999988888776 478899999999999999
Q ss_pred CCcccccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCCC---CCCCccEeeccCccccccccc
Q 012450 161 TELPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQHCTTLESLSG 233 (463)
Q Consensus 161 ~~~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~---l~~~L~~L~i~~c~~L~~l~~ 233 (463)
.++| .+..+++|+.|+|++|.++.+ |..+.++++|+.|++++|..-...+. -.++|+.|+++++ .++.++.
T Consensus 209 ~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 283 (452)
T 3zyi_A 209 KDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPH 283 (452)
T ss_dssp SSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred cccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccCh
Confidence 9987 478999999999999999876 67899999999999999864332232 2368999999887 5666654
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=1.2e-21 Score=215.32 Aligned_cols=205 Identities=21% Similarity=0.276 Sum_probs=168.9
Q ss_pred cccccCCcCccEEeeecCCCCCC------------------CCC-CC--CCCCccEEEeeccCCC-ccCccccCCCCccE
Q 012450 24 PSLIQHLNKLVILNLSGCSKLKS------------------LPE-IS--SAGNIEKILLDGTAIE-ELPSSIGCLSRLLE 81 (463)
Q Consensus 24 ~~~~~~l~~L~~L~L~~c~~l~~------------------lp~-l~--~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~ 81 (463)
|..++++++|+.|+|++|. +.. +|. ++ .+++|++|+|++|.+. .+|..++++++|+.
T Consensus 441 P~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp CGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 6778899999999999975 444 887 77 8999999999998755 78888999999999
Q ss_pred EeeecCCCCC--ccchhcCCC-------CCCcEEEEECCCCccCCc--cCCCCCCccEEecCCCCCCCcCcccCCCCCCc
Q 012450 82 LNLGDCKNLK--TLPSSLCKL-------KSLEEICLTGSAIEELPS--PIECLSALCVLDLGDCKSLKSLKLPFDGLYSL 150 (463)
Q Consensus 82 L~l~~c~~l~--~lp~~l~~l-------~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L 150 (463)
|++++|..+. .+|..++++ ++|+.|++++|.++.+|. .++.+++|+.|++++|. ++.+| .+..+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcc
Confidence 9999986344 478766555 499999999999999998 89999999999999987 44888 68899999
Q ss_pred cEEEeeCCCCCCcccccCCccc-ccccccccccccccchhhhCCCC--ccEeccccccccccCCCCC--------CCccE
Q 012450 151 TYLYLTDCAITELPESLGLLSS-LEELYLERNNFERIPESIIRLSK--LSSLLVSYCERLQSLPKLP--------CNLYW 219 (463)
Q Consensus 151 ~~L~L~~~~l~~~p~~l~~l~~-L~~L~Ls~n~l~~lp~~l~~l~~--L~~L~L~~c~~l~~l~~l~--------~~L~~ 219 (463)
+.|+|++|.+..+|..+..+++ |+.|+|++|.++.+|..+..++. |+.|++++|.....+|.++ ++|+.
T Consensus 598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred eEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 9999999999999988999998 99999999999988877766654 9999999987655555544 36788
Q ss_pred eeccCcccccccc
Q 012450 220 LDAQHCTTLESLS 232 (463)
Q Consensus 220 L~i~~c~~L~~l~ 232 (463)
|++++|. +..++
T Consensus 678 L~Ls~N~-L~~lp 689 (876)
T 4ecn_A 678 VTLSYNE-IQKFP 689 (876)
T ss_dssp EECCSSC-CCSCC
T ss_pred EEccCCc-CCccC
Confidence 8887763 44444
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=2.3e-20 Score=179.80 Aligned_cols=199 Identities=24% Similarity=0.346 Sum_probs=155.9
Q ss_pred CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCC-CC-CCCCCCccEEEeeccC-CCcc-CccccCCCCc
Q 012450 4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTA-IEEL-PSSIGCLSRL 79 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-p~-l~~l~~L~~L~L~~~~-i~~l-p~~i~~l~~L 79 (463)
.++|++|+|+++ .++.++ +..+..+++|++|++++| .++.+ |. +..+++|++|++++|. ++.+ +..+..+++|
T Consensus 31 ~~~l~~L~l~~n-~i~~~~-~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVP-AASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp CTTCSEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCC-cCCccC-HHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 467888999884 456553 456788889999999886 44544 44 7888889999998886 7777 5567888889
Q ss_pred cEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeC
Q 012450 80 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTD 157 (463)
Q Consensus 80 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~ 157 (463)
++|++++|......|..+.++++|++|++++|.++.++.. +..+++|++|++++|. ++.++. .+.++++|+.|++++
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCC
Confidence 9999988765555567788888899999999888877654 7788889999998876 455554 477888899999999
Q ss_pred CCCCCc-ccccCCcccccccccccccccccch-hhhCCCCccEeccccccc
Q 012450 158 CAITEL-PESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCER 206 (463)
Q Consensus 158 ~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~~ 206 (463)
|.+.++ |..+..+++|+.|++++|+++.++. .+..+++|+.|++++|+.
T Consensus 187 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 888874 7778888889999999998887764 578888899999888853
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=2.2e-21 Score=208.00 Aligned_cols=226 Identities=18% Similarity=0.185 Sum_probs=131.1
Q ss_pred CCCcceeecccccCcCCCCCcc--cccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCC---
Q 012450 4 HGKLNQIIMAACNIFTKTPNPS--LIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSR--- 78 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~~~~~--~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~--- 78 (463)
+++|++|+|++| .++.+ |. .++++++|+.|++++|...+.+|.++.+++|++|++++|.++.+|..+..+++
T Consensus 304 l~~L~~L~L~~n-~l~~i--p~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 304 GEKIQIIYIGYN-NLKTF--PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380 (636)
T ss_dssp GGTCCEEECCSS-CCSSC--CCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCC
T ss_pred CCCCCEEECCCC-cCCcc--CchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCc
Confidence 466666666664 34455 44 56666666666666654332555444444444455444444444444444444
Q ss_pred -----------------------ccEEeeecCCCCCccchhcC-------CCCCCcEEEEECCCCccCCccC-CCCCCcc
Q 012450 79 -----------------------LLELNLGDCKNLKTLPSSLC-------KLKSLEEICLTGSAIEELPSPI-ECLSALC 127 (463)
Q Consensus 79 -----------------------L~~L~l~~c~~l~~lp~~l~-------~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~ 127 (463)
|++|++++|......|..+. .+++|+.|++++|.++.+|..+ ..+++|+
T Consensus 381 ~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp EEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred EEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence 44444444444333444444 4455666666666666555543 2356666
Q ss_pred EEecCCCCCCCcCcccCCC--------CCCccEEEeeCCCCCCcccccC--CcccccccccccccccccchhhhCCCCcc
Q 012450 128 VLDLGDCKSLKSLKLPFDG--------LYSLTYLYLTDCAITELPESLG--LLSSLEELYLERNNFERIPESIIRLSKLS 197 (463)
Q Consensus 128 ~L~l~~c~~l~~l~~~l~~--------l~~L~~L~L~~~~l~~~p~~l~--~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 197 (463)
+|++++|. ++.+|..... +++|+.|+|++|.++.+|..+. .+++|+.|+|++|+++.+|..+..+++|+
T Consensus 461 ~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~ 539 (636)
T 4eco_A 461 SINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLK 539 (636)
T ss_dssp EEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCC
T ss_pred EEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCC
Confidence 66666655 3345443221 2277777777777777777766 77777777777777777777777777777
Q ss_pred Eecccc------ccccccCCCC---CCCccEeeccCcccccccccC
Q 012450 198 SLLVSY------CERLQSLPKL---PCNLYWLDAQHCTTLESLSGL 234 (463)
Q Consensus 198 ~L~L~~------c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~~~ 234 (463)
.|++++ |...+.+|.. .++|+.|++++|. ++.++..
T Consensus 540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~ 584 (636)
T 4eco_A 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK 584 (636)
T ss_dssp EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC
T ss_pred EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh
Confidence 777744 3334455532 3567777777764 3666553
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=2.3e-20 Score=192.92 Aligned_cols=217 Identities=18% Similarity=0.203 Sum_probs=163.9
Q ss_pred CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCC-CC-CCCCCCccEEEeeccCCCccCcc-ccCCCCcc
Q 012450 4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIEELPSS-IGCLSRLL 80 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-p~-l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~ 80 (463)
.++|+.|+|++| .++.++ +..+.++++|++|+|++| .+..+ |. +..+++|++|+|++|.++.+|.. +..+++|+
T Consensus 31 ~~~l~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 31 PTETRLLDLGKN-RIKTLN-QDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp CTTCSEEECCSS-CCCEEC-TTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred CCCCcEEECCCC-ccceEC-HhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCC
Confidence 358999999995 566653 578999999999999997 45554 55 89999999999999999999875 68999999
Q ss_pred EEeeecCCCCCccchhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCCCCcCc-ccCCCCCCccEEEeeCC
Q 012450 81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDC 158 (463)
Q Consensus 81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~L~~~ 158 (463)
+|++++|......|..+..+++|+.|++++|.++.+ +..+..+++|++|++++|. ++.++ ..+..+++|+.|++++|
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESC
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCC
Confidence 999999876666677899999999999999999876 4578899999999999986 44444 33566667777777776
Q ss_pred CCCCcc-cccCCcc------------------------cccccccccccccccc-hhhhCCCCccEeccccccccccCCC
Q 012450 159 AITELP-ESLGLLS------------------------SLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPK 212 (463)
Q Consensus 159 ~l~~~p-~~l~~l~------------------------~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~~ 212 (463)
.+..++ ..+..++ +|++|++++|+++.+| ..+..+++|+.|++++|. ++.++.
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~ 265 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG 265 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECT
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccCh
Confidence 665532 2333343 5566666666666666 356778888888888875 333332
Q ss_pred ----CCCCccEeeccCc
Q 012450 213 ----LPCNLYWLDAQHC 225 (463)
Q Consensus 213 ----l~~~L~~L~i~~c 225 (463)
-.++|+.|++.++
T Consensus 266 ~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 266 SMLHELLRLQEIQLVGG 282 (477)
T ss_dssp TSCTTCTTCCEEECCSS
T ss_pred hhccccccCCEEECCCC
Confidence 1356777777765
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=1.2e-20 Score=207.27 Aligned_cols=226 Identities=19% Similarity=0.234 Sum_probs=146.3
Q ss_pred CCCCcceeecccccCcCCCCCcc--cccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCC-c
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPS--LIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSR-L 79 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~--~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~-L 79 (463)
.+++|++|+|++| .++.+ |. .++++++|+.|+|++|. +..+|.++.+++|+.|++++|.++.+|..+..+++ |
T Consensus 546 ~l~~L~~L~Ls~N-~L~~i--p~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L 621 (876)
T 4ecn_A 546 TGPKIQIFYMGYN-NLEEF--PASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621 (876)
T ss_dssp TTTTCCEEECCSS-CCCBC--CCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTC
T ss_pred ccCCccEEEeeCC-cCCcc--CChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccC
Confidence 4567777777774 34466 55 67777777777777754 44667677777777777777777777776777776 7
Q ss_pred cEEeeecCCCCCccchhcCCCC-------------------------------CCcEEEEECCCCccCCccCC-CCCCcc
Q 012450 80 LELNLGDCKNLKTLPSSLCKLK-------------------------------SLEEICLTGSAIEELPSPIE-CLSALC 127 (463)
Q Consensus 80 ~~L~l~~c~~l~~lp~~l~~l~-------------------------------~L~~L~l~~~~i~~lp~~i~-~l~~L~ 127 (463)
+.|++++|. +..+|..+..++ +|+.|++++|.++.+|..+. .+++|+
T Consensus 622 ~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~ 700 (876)
T 4ecn_A 622 EGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700 (876)
T ss_dssp CEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCS
T ss_pred CEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCC
Confidence 777777654 335554443332 44455555555555554432 566677
Q ss_pred EEecCCCCCCCcCcccCCC--------CCCccEEEeeCCCCCCcccccC--CcccccccccccccccccchhhhCCCCcc
Q 012450 128 VLDLGDCKSLKSLKLPFDG--------LYSLTYLYLTDCAITELPESLG--LLSSLEELYLERNNFERIPESIIRLSKLS 197 (463)
Q Consensus 128 ~L~l~~c~~l~~l~~~l~~--------l~~L~~L~L~~~~l~~~p~~l~--~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 197 (463)
.|++++|. +..+|..+.. +++|+.|+|++|+++.+|..+. .+++|+.|+|++|+++.+|..+..+++|+
T Consensus 701 ~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~ 779 (876)
T 4ecn_A 701 TIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLK 779 (876)
T ss_dssp EEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCC
T ss_pred EEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCC
Confidence 77777664 4455543322 2277888888887777777776 77888888888888877777777888888
Q ss_pred Eecccc------ccccccCCCC---CCCccEeeccCcccccccccCC
Q 012450 198 SLLVSY------CERLQSLPKL---PCNLYWLDAQHCTTLESLSGLF 235 (463)
Q Consensus 198 ~L~L~~------c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~~~~ 235 (463)
.|+|++ |.....+|.. .++|+.|++++|. +..+|..+
T Consensus 780 ~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l 825 (876)
T 4ecn_A 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKL 825 (876)
T ss_dssp EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCC
T ss_pred EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhh
Confidence 888766 3334455532 3567788887764 36666543
No 27
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=6.2e-21 Score=189.61 Aligned_cols=171 Identities=22% Similarity=0.302 Sum_probs=79.0
Q ss_pred CccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccC-ccccCCCCccEEeeecCCCCCccchh-cCCCCCCcEEE
Q 012450 32 KLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELP-SSIGCLSRLLELNLGDCKNLKTLPSS-LCKLKSLEEIC 107 (463)
Q Consensus 32 ~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~ 107 (463)
+|++|++++| .++.+|. +..+++|++|++++|.++.++ ..+..+++|++|++++|. ++.+|.. +.++++|++|+
T Consensus 53 ~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 53 AVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEE
T ss_pred cCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEE
Confidence 4555555543 2333333 444555555555555554442 234445555555555432 2333322 44455555555
Q ss_pred EECCCCccCCc--cCCCCCCccEEecCCCCCCCcC-cccCCCCCCccEEEeeCCCCCC-cccccCCcccccccccccccc
Q 012450 108 LTGSAIEELPS--PIECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNF 183 (463)
Q Consensus 108 l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l 183 (463)
+++|.++.+|. .+..+++|++|++++|..++.+ +..+.++++|+.|++++|.+.+ .|..+..+++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 55555554443 3444555555555554333333 2234444555555555555444 244444555555555555554
Q ss_pred cccchhh-hCCCCccEeccccc
Q 012450 184 ERIPESI-IRLSKLSSLLVSYC 204 (463)
Q Consensus 184 ~~lp~~l-~~l~~L~~L~L~~c 204 (463)
+.+|..+ ..+++|+.|++++|
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESC
T ss_pred ccchhhhhhhcccccEEECCCC
Confidence 4444322 22445555555444
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=2.2e-20 Score=184.84 Aligned_cols=218 Identities=20% Similarity=0.292 Sum_probs=174.2
Q ss_pred CCCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCcc
Q 012450 1 MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLL 80 (463)
Q Consensus 1 l~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 80 (463)
+.++++|++|++++| .++.+ +. +..+++|+.|++++|..+..++.+..+++|++|++++|.+..++. +..+++|+
T Consensus 106 ~~~l~~L~~L~l~~n-~i~~~--~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~ 180 (347)
T 4fmz_A 106 LQNLTNLRELYLNED-NISDI--SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLY 180 (347)
T ss_dssp GTTCTTCSEEECTTS-CCCCC--GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCS
T ss_pred HcCCCcCCEEECcCC-cccCc--hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCC
Confidence 357899999999995 56666 33 889999999999999888888889999999999999999887776 78899999
Q ss_pred EEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCC
Q 012450 81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAI 160 (463)
Q Consensus 81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l 160 (463)
.|++++|. +..++. +..+++|+.|++++|.++.++. +..+++|++|++++|. ++.++. +..+++|+.|++++|.+
T Consensus 181 ~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 181 SLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp EEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEEccCCc-cccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCcc
Confidence 99999874 555554 7788889999999988887765 7788889999998876 555555 77888889999988888
Q ss_pred CCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCC---CCCCccEeeccCccccccc
Q 012450 161 TELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQHCTTLESL 231 (463)
Q Consensus 161 ~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~---l~~~L~~L~i~~c~~L~~l 231 (463)
.+++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|......+. -.++|+.|++++|. ++.+
T Consensus 256 ~~~~-~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 256 SDIN-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp CCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred CCCh-hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccc
Confidence 8874 5778888888888888888775 577888888888888854332222 23678888888875 4444
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=1e-20 Score=194.10 Aligned_cols=131 Identities=19% Similarity=0.230 Sum_probs=99.2
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCcc-CccccCCCCccE
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLE 81 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~ 81 (463)
++|++|+|++|. ++.+. +..+.++++|++|++++|.....++. +..+++|++|++++|.++.+ |..++.+++|++
T Consensus 30 ~~l~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSC-CCEEC-TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCc-cCcCC-hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 578889998854 44442 56788888899999888766556544 78888888888888888865 666888888888
Q ss_pred EeeecCCCCCccchh--cCCCCCCcEEEEECCCCccC-Ccc-CCCCCCccEEecCCCCCC
Q 012450 82 LNLGDCKNLKTLPSS--LCKLKSLEEICLTGSAIEEL-PSP-IECLSALCVLDLGDCKSL 137 (463)
Q Consensus 82 L~l~~c~~l~~lp~~--l~~l~~L~~L~l~~~~i~~l-p~~-i~~l~~L~~L~l~~c~~l 137 (463)
|++++|......|.. +..+++|++|++++|.++.+ |.. +..+++|++|++++|...
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 888887654444544 77888888888888888876 443 678888888888887643
No 30
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=1.3e-20 Score=182.44 Aligned_cols=193 Identities=23% Similarity=0.270 Sum_probs=87.8
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCC-C-CCCCCCccEEEeeccCCCccCccccCCCCcc
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAIEELPSSIGCLSRLL 80 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp-~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 80 (463)
++++++++++++ +.++.+ |..+. ++|+.|++++|. ++.++ . +..+++|++|++++|.++.++.. +.+++|+
T Consensus 8 ~l~~l~~l~~~~-~~l~~i--p~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 8 KVASHLEVNCDK-RNLTAL--PPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp CSTTCCEEECTT-SCCSSC--CSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred ccCCccEEECCC-CCCCcC--CCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 344555555554 344444 33322 345555555532 23222 1 44455555555555555544432 4445555
Q ss_pred EEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCC-ccCCCCCCccEEecCCCCCCCcCc-ccCCCCCCccEEEeeCC
Q 012450 81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDC 158 (463)
Q Consensus 81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~L~~~ 158 (463)
+|++++| .+..+|..+..+++|+.|++++|.++.+| ..+..+++|++|++++|. ++.++ ..+..+++|+.|+|++|
T Consensus 81 ~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCC
Confidence 5555543 23344444444555555555555555443 234444555555555443 22222 22344444555555555
Q ss_pred CCCCcccc-cCCcccccccccccccccccchhhhCCCCccEeccccc
Q 012450 159 AITELPES-LGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC 204 (463)
Q Consensus 159 ~l~~~p~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c 204 (463)
+++.+|.. +..+++|+.|+|++|+++.+|..+..+.+|+.|++++|
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 54444432 23444555555555555444444444444444444443
No 31
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=2.7e-21 Score=192.20 Aligned_cols=217 Identities=21% Similarity=0.180 Sum_probs=165.6
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCC-C-CCCCCCccEEEeeccCCCccCcc-ccCCCCccE
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLE 81 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp-~-l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~ 81 (463)
++|++|++++| .++.++ +..+.++++|+.|++++| .++.++ . ++.+++|++|++++|.++.++.. ++.+++|++
T Consensus 52 ~~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYIS-NSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred ccCcEEECCCC-cCcccC-HHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 57889999884 466663 346888899999999886 455553 3 88888999999999988888876 788889999
Q ss_pred EeeecCCCCCccch--hcCCCCCCcEEEEECC-CCccC-CccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeC
Q 012450 82 LNLGDCKNLKTLPS--SLCKLKSLEEICLTGS-AIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTD 157 (463)
Q Consensus 82 L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~~-~i~~l-p~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~ 157 (463)
|++++| .++.+|. .+..+++|+.|++++| .++.+ +..+..+++|++|++++|......|..+..+++|+.|++++
T Consensus 129 L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 129 LNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp EECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 999886 4556665 6778889999999888 46666 45678888899999988875555567788888888888888
Q ss_pred CCCCCccccc-CCcccccccccccccccc--------------------------------cchhhhCCCCccEeccccc
Q 012450 158 CAITELPESL-GLLSSLEELYLERNNFER--------------------------------IPESIIRLSKLSSLLVSYC 204 (463)
Q Consensus 158 ~~l~~~p~~l-~~l~~L~~L~Ls~n~l~~--------------------------------lp~~l~~l~~L~~L~L~~c 204 (463)
|.+..+|..+ ..+++|+.|++++|+++. +|..+..+++|+.|++++|
T Consensus 208 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred CccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 8887766543 347788888888887653 5667889999999999998
Q ss_pred cccccCCCC----CCCccEeeccCcc
Q 012450 205 ERLQSLPKL----PCNLYWLDAQHCT 226 (463)
Q Consensus 205 ~~l~~l~~l----~~~L~~L~i~~c~ 226 (463)
.++.+|.. .++|+.|++++++
T Consensus 288 -~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 288 -QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 45566642 3567777777663
No 32
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.5e-20 Score=174.84 Aligned_cols=206 Identities=24% Similarity=0.313 Sum_probs=169.4
Q ss_pred ccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccC-CCccCc-cccCCCCccEEeeecCCCC
Q 012450 15 CNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTA-IEELPS-SIGCLSRLLELNLGDCKNL 90 (463)
Q Consensus 15 c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~-i~~lp~-~i~~l~~L~~L~l~~c~~l 90 (463)
|..++++ |. + .++|+.|++++| .++.+|. +..+++|++|++++|. ++.++. .+..+++|++|++++|+.+
T Consensus 20 c~~l~~i--p~-~--~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 20 CKDIQRI--PS-L--PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp ECSCSSC--CC-C--CTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred ccCcccc--CC-C--CCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence 5668888 55 3 348999999995 5677765 8899999999999996 998876 5889999999999985667
Q ss_pred Cccc-hhcCCCCCCcEEEEECCCCccCCccCCCCCCcc---EEecCCCCCCCcCcc-cCCCCCCcc-EEEeeCCCCCCcc
Q 012450 91 KTLP-SSLCKLKSLEEICLTGSAIEELPSPIECLSALC---VLDLGDCKSLKSLKL-PFDGLYSLT-YLYLTDCAITELP 164 (463)
Q Consensus 91 ~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~---~L~l~~c~~l~~l~~-~l~~l~~L~-~L~L~~~~l~~~p 164 (463)
+.++ ..+.++++|+.|++++|.++.+|. +..+++|+ +|++++|..++.++. .+.++++|+ .|++++|.++.+|
T Consensus 94 ~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 94 TYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172 (239)
T ss_dssp CEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred eEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence 7776 467899999999999999999987 88888888 999999955777665 478899999 9999999999988
Q ss_pred cccCCccccccccccccc-ccccc-hhhhCC-CCccEeccccccccccCCC-CCCCccEeeccCcccc
Q 012450 165 ESLGLLSSLEELYLERNN-FERIP-ESIIRL-SKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTTL 228 (463)
Q Consensus 165 ~~l~~l~~L~~L~Ls~n~-l~~lp-~~l~~l-~~L~~L~L~~c~~l~~l~~-l~~~L~~L~i~~c~~L 228 (463)
......++|++|++++|+ ++.+| ..+..+ ++|+.|++++| .++.+|. ..++++.|++.++..|
T Consensus 173 ~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC---
T ss_pred HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCccCC
Confidence 766556899999999995 98886 457788 99999999997 4566665 4678888888877543
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=195.51 Aligned_cols=97 Identities=20% Similarity=0.218 Sum_probs=72.0
Q ss_pred CCCCCccEEEeeCCCCCC-cccccCCcccccccccccccccc---cchhhhCCCCccEeccccccccccCCC----CCCC
Q 012450 145 DGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFER---IPESIIRLSKLSSLLVSYCERLQSLPK----LPCN 216 (463)
Q Consensus 145 ~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~L~~c~~l~~l~~----l~~~ 216 (463)
..+++|+.|++++|.+.+ +|..+..+++|++|++++|+++. +|..+..+++|+.|++++|.....+|. ..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 567889999999998887 77888899999999999998874 456788899999999999865443553 2467
Q ss_pred ccEeeccCcccccccccCC-CCceeE
Q 012450 217 LYWLDAQHCTTLESLSGLF-SSYKCV 241 (463)
Q Consensus 217 L~~L~i~~c~~L~~l~~~~-~~~~~~ 241 (463)
|+.|++++|.--..++... ..+..+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L 426 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVL 426 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEE
T ss_pred CCEEECcCCCCCcchhhhhcccCCEE
Confidence 8888888875434444333 244444
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=8.6e-21 Score=201.88 Aligned_cols=223 Identities=20% Similarity=0.179 Sum_probs=134.5
Q ss_pred CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCcc---CccccCCCCcc
Q 012450 4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEEL---PSSIGCLSRLL 80 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~ 80 (463)
+++|++|++++|.. +.+ | .+ .+++|+.|++++|..+..+ .+..+++|++|++++|.++.+ +..+..+++|+
T Consensus 306 ~~~L~~L~l~~n~l-~~l--p-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 379 (606)
T 3vq2_A 306 HFKWQSLSIIRCQL-KQF--P-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379 (606)
T ss_dssp TCCCSEEEEESCCC-SSC--C-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCC
T ss_pred cccCCEEEcccccC-ccc--c-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCccc
Confidence 34455555555333 444 2 22 4555555555554333322 244556666666666655543 55566666677
Q ss_pred EEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCc--cCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCC
Q 012450 81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS--PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC 158 (463)
Q Consensus 81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~ 158 (463)
+|++++|. +..+|..+..+++|+.|++++|.+..++. .+..+++|++|++++|......|..+.++++|+.|++++|
T Consensus 380 ~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 380 HLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp EEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred EeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 77776654 44556666667777777777776665533 5666777777777777655555666667777777777777
Q ss_pred CCCC--cccccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCCCC---CCCccEeeccCcccccccc
Q 012450 159 AITE--LPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLS 232 (463)
Q Consensus 159 ~l~~--~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~ 232 (463)
.+.+ +|..+..+++|+.|++++|+++.+ |..+..+++|+.|++++|......|.. .++|+.|++++|. ++.++
T Consensus 459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p 537 (606)
T 3vq2_A 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSK 537 (606)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEE
T ss_pred cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccC
Confidence 7665 566677777777777777777644 455677777777777777433332321 2467777777763 55555
Q ss_pred cC
Q 012450 233 GL 234 (463)
Q Consensus 233 ~~ 234 (463)
..
T Consensus 538 ~~ 539 (606)
T 3vq2_A 538 GI 539 (606)
T ss_dssp SC
T ss_pred Hh
Confidence 43
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=4e-20 Score=189.41 Aligned_cols=217 Identities=28% Similarity=0.426 Sum_probs=181.1
Q ss_pred cceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccC-ccccCCCCccEEe
Q 012450 7 LNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELP-SSIGCLSRLLELN 83 (463)
Q Consensus 7 L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~ 83 (463)
...++.++ ..++.+ |..+. ++++.|+|++| .++.++. +..+++|++|+|++|.++.++ ..+..+++|++|+
T Consensus 45 ~~~v~c~~-~~l~~i--P~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 45 FSKVICVR-KNLREV--PDGIS--TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp SCEEECCS-CCCSSC--CSCCC--TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred CCEEEeCC-CCcCcC--CCCCC--CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence 45677776 678888 56554 78999999996 5666553 899999999999999999877 4588999999999
Q ss_pred eecCCCCCccch-hcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCC
Q 012450 84 LGDCKNLKTLPS-SLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAI 160 (463)
Q Consensus 84 l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l 160 (463)
+++|. ++.+|. .+..+++|++|++++|.++.++. .+..+++|++|++++|..+..++. .+.++++|+.|++++|.+
T Consensus 119 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 119 LFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp CCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred CCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 99974 556654 68899999999999999998876 688999999999999888888776 578899999999999999
Q ss_pred CCcccccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCC-C---CCCCccEeeccCccccccccc
Q 012450 161 TELPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLP-K---LPCNLYWLDAQHCTTLESLSG 233 (463)
Q Consensus 161 ~~~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~-~---l~~~L~~L~i~~c~~L~~l~~ 233 (463)
+++|. +..+++|+.|+|++|+++.+ |..+..+++|+.|++++|. ++.++ . -.++|+.|+++++ .++.++.
T Consensus 198 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 272 (440)
T 3zyj_A 198 REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPH 272 (440)
T ss_dssp SSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCT
T ss_pred ccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccCh
Confidence 99984 78999999999999999876 6788999999999999985 33332 2 2468999999886 5665553
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3.7e-20 Score=182.38 Aligned_cols=217 Identities=21% Similarity=0.333 Sum_probs=174.0
Q ss_pred CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCcc-CccccCCCCccEE
Q 012450 6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLEL 82 (463)
Q Consensus 6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L 82 (463)
+++.+++++ ..++.+ |..+ .++|+.|++++|. ++.++. +..+++|++|++++|.++.+ |..++.+++|++|
T Consensus 34 ~l~~l~~~~-~~l~~i--p~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSD-LGLKAV--PKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCS-SCCSSC--CSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCC-CCcccc--CCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 689999998 467777 5554 3789999999964 555543 88999999999999999977 5678999999999
Q ss_pred eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCC--CcCcccCCCCCCccEEEeeCCC
Q 012450 83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSL--KSLKLPFDGLYSLTYLYLTDCA 159 (463)
Q Consensus 83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l--~~l~~~l~~l~~L~~L~L~~~~ 159 (463)
++++| .+..+|..+. ++|++|++++|.++.++.. +..+++|++|++++|..- ...+..+..+ +|+.|++++|.
T Consensus 108 ~L~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 108 YISKN-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp ECCSS-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred ECCCC-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 99986 4667887665 8999999999999988764 788999999999998742 2445556666 89999999999
Q ss_pred CCCcccccCCcccccccccccccccccc-hhhhCCCCccEeccccccccccCCC----CCCCccEeeccCcccccccccC
Q 012450 160 ITELPESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPK----LPCNLYWLDAQHCTTLESLSGL 234 (463)
Q Consensus 160 l~~~p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~~----l~~~L~~L~i~~c~~L~~l~~~ 234 (463)
++++|..+. ++|++|++++|.++.++ ..+..+++|+.|++++|. ++.++. ..++|+.|+++++ .++.++..
T Consensus 184 l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~ 259 (332)
T 2ft3_A 184 LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNN-KLSRVPAG 259 (332)
T ss_dssp CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCC-cCeecChh
Confidence 999887654 79999999999998766 678899999999999984 444432 2468999999887 56677654
Q ss_pred CC
Q 012450 235 FS 236 (463)
Q Consensus 235 ~~ 236 (463)
+.
T Consensus 260 l~ 261 (332)
T 2ft3_A 260 LP 261 (332)
T ss_dssp GG
T ss_pred hh
Confidence 43
No 37
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=6.4e-21 Score=186.39 Aligned_cols=192 Identities=19% Similarity=0.191 Sum_probs=104.3
Q ss_pred CCcCccEEeeecCCCCCCCCC-C--CCCCCccEEEeeccCCCccCccccCC-----CCccEEeeecCCCCCccchhcCCC
Q 012450 29 HLNKLVILNLSGCSKLKSLPE-I--SSAGNIEKILLDGTAIEELPSSIGCL-----SRLLELNLGDCKNLKTLPSSLCKL 100 (463)
Q Consensus 29 ~l~~L~~L~L~~c~~l~~lp~-l--~~l~~L~~L~L~~~~i~~lp~~i~~l-----~~L~~L~l~~c~~l~~lp~~l~~l 100 (463)
++++|++|++++|.....+|. + ..+++|++|++++|.++.+|..++.+ ++|++|++++|......|..++++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 456666666666544445554 3 56666666666666666555555444 666666666654433333556666
Q ss_pred CCCcEEEEECCCCcc---CCccC--CCCCCccEEecCCCCCCCcCc----ccCCCCCCccEEEeeCCCCCCcc--cccCC
Q 012450 101 KSLEEICLTGSAIEE---LPSPI--ECLSALCVLDLGDCKSLKSLK----LPFDGLYSLTYLYLTDCAITELP--ESLGL 169 (463)
Q Consensus 101 ~~L~~L~l~~~~i~~---lp~~i--~~l~~L~~L~l~~c~~l~~l~----~~l~~l~~L~~L~L~~~~l~~~p--~~l~~ 169 (463)
++|++|++++|.+.. ++..+ ..+++|++|++++|. ++.++ ..+.++++|+.|++++|.+.+.+ ..+..
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 666666666665432 23333 556666666666654 33221 11234556666666666666532 23444
Q ss_pred cccccccccccccccccchhhhCCCCccEeccccccccccCCCC--CCCccEeeccC
Q 012450 170 LSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQH 224 (463)
Q Consensus 170 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l--~~~L~~L~i~~ 224 (463)
+++|++|++++|+++.+|..+. ++|+.|++++| .++.+|.+ .++|+.|++++
T Consensus 252 l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKG 305 (312)
T ss_dssp CTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTT
T ss_pred cCCCCEEECCCCccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccC
Confidence 5666666666666666665444 56666666665 33433331 13444555544
No 38
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=3.1e-20 Score=181.28 Aligned_cols=187 Identities=21% Similarity=0.322 Sum_probs=83.9
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEee
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l 84 (463)
++|++|++++| .++++ + .+..+++|++|++++| .+..++.+..+++|++|++++|.++.++ .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~-~i~~l--~-~~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGT-GVTTI--E-GVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTS-CCCCC--T-TGGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCC-CccCc--h-hhhccCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 34444454442 23333 1 3444444555555443 3333333444444555555544444443 2444444555555
Q ss_pred ecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc
Q 012450 85 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP 164 (463)
Q Consensus 85 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p 164 (463)
++|. +..++. +..+++|+.|++++|.++.++. +..+++|++|++++|. ++.++. +..+++|+.|++++|.+.+++
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCC-CCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCCccCcCh
Confidence 4432 233332 4444445555554444444433 4444444444444443 333333 444444444444444444443
Q ss_pred cccCCcccccccccccccccccchhhhCCCCccEeccccc
Q 012450 165 ESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC 204 (463)
Q Consensus 165 ~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c 204 (463)
. +..+++|++|++++|+++.++ .+..+++|+.|++++|
T Consensus 190 ~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 190 P-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp G-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEE
T ss_pred h-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCC
Confidence 2 344444444444444444444 2444444444444444
No 39
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=2.9e-20 Score=180.85 Aligned_cols=219 Identities=22% Similarity=0.273 Sum_probs=181.4
Q ss_pred CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCC---CC-CCCCCCccEEEeeccCCCccCccccCCCCc
Q 012450 4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL---PE-ISSAGNIEKILLDGTAIEELPSSIGCLSRL 79 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l---p~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L 79 (463)
.++|++|+|++| .+++++ +..+.++++|++|++++| .++.+ +. +..+++|++|++++|.++.+|..+..+++|
T Consensus 27 ~~~l~~L~L~~n-~l~~i~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 27 PSSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103 (306)
T ss_dssp CTTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred CCCCCEEECCCC-ccCccC-HhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccccChhhcCCCCCC
Confidence 358999999995 577773 345789999999999996 45444 33 567899999999999999999999999999
Q ss_pred cEEeeecCCCCCccc--hhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCCCC-cCcccCCCCCCccEEEe
Q 012450 80 LELNLGDCKNLKTLP--SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLK-SLKLPFDGLYSLTYLYL 155 (463)
Q Consensus 80 ~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~-~l~~~l~~l~~L~~L~L 155 (463)
++|++++|. +..++ ..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.... .+|..+..+++|+.|++
T Consensus 104 ~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 104 EHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp CEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 999999975 44444 4688999999999999999855 5568899999999999987444 46777899999999999
Q ss_pred eCCCCCCc-ccccCCcccccccccccccccccch-hhhCCCCccEeccccccccccCC----CCCCCccEeeccCcc
Q 012450 156 TDCAITEL-PESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCERLQSLP----KLPCNLYWLDAQHCT 226 (463)
Q Consensus 156 ~~~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~l~----~l~~~L~~L~i~~c~ 226 (463)
++|.+.++ |..+..+++|++|++++|.++.++. .+..+++|+.|++++|......+ .+|++|++|++++++
T Consensus 183 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 99999985 7788999999999999999987764 67889999999999996544333 345678888887753
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=4.8e-20 Score=185.65 Aligned_cols=222 Identities=21% Similarity=0.285 Sum_probs=174.8
Q ss_pred CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCc-cccCCCCcc
Q 012450 4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPS-SIGCLSRLL 80 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~ 80 (463)
+++++.|++++ +.++.++ +..+..+++|++|++++|. +..++. +..+++|++|++++|.++.++. .++.+++|+
T Consensus 44 l~~l~~l~l~~-~~l~~l~-~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 44 LNNQKIVTFKN-STMRKLP-AALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GCCCSEEEEES-CEESEEC-THHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCceEEEecC-CchhhCC-hhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 58899999998 4678884 3457889999999999974 566554 8999999999999999998765 479999999
Q ss_pred EEeeecCCCCCccchh-cCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCCcCcc-cC-------------
Q 012450 81 ELNLGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PF------------- 144 (463)
Q Consensus 81 ~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~-~l------------- 144 (463)
+|++++| .+..+|.. +.++++|++|++++|.++.++. .+..+++|++|++++|.. +.++. .+
T Consensus 121 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 121 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBCCGGGCTTCSEEECCSSCC
T ss_pred EEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-Cccccccccccceeecccccc
Confidence 9999997 46677765 5899999999999999998754 588999999999999863 32221 01
Q ss_pred ------------------------CCCCCccEEEeeCCCCCCcccccCCccccccccccccccccc-chhhhCCCCccEe
Q 012450 145 ------------------------DGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSL 199 (463)
Q Consensus 145 ------------------------~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L 199 (463)
...++|+.|++++|.+++. ..+..+++|++|++++|.++.+ |..+..+++|+.|
T Consensus 199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence 0123466666666666665 3578899999999999999865 6789999999999
Q ss_pred ccccccccccCCC---CCCCccEeeccCccccccccc
Q 012450 200 LVSYCERLQSLPK---LPCNLYWLDAQHCTTLESLSG 233 (463)
Q Consensus 200 ~L~~c~~l~~l~~---l~~~L~~L~i~~c~~L~~l~~ 233 (463)
++++|. ++.+|. -.++|+.|++++| .++.++.
T Consensus 278 ~L~~n~-l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 312 (390)
T 3o6n_A 278 YISNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVER 312 (390)
T ss_dssp ECCSSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGG
T ss_pred ECCCCc-CcccCcccCCCCCCCEEECCCC-cceecCc
Confidence 999984 455554 2478999999987 4555554
No 41
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=6.9e-20 Score=194.89 Aligned_cols=196 Identities=24% Similarity=0.345 Sum_probs=92.0
Q ss_pred CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCcc-CccccCCCCccEEe
Q 012450 6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLELN 83 (463)
Q Consensus 6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~ 83 (463)
+|++|++++| .++.++ +..++.+++|++|++++| .++.+|. +..+++|++|++++|.++.+ |..+..+++|++|+
T Consensus 255 ~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKH-YFFNIS-SNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTC-CCSSCC-TTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred ceeEEEeecC-ccCccC-HHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence 4555555553 333332 333555555555555553 3445554 55555555555555555543 23345555555555
Q ss_pred eecCCCCCccchh-cCCCCCCcEEEEECCCCccC---CccCCCCCCccEEecCCCCCCCcCccc----------------
Q 012450 84 LGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEEL---PSPIECLSALCVLDLGDCKSLKSLKLP---------------- 143 (463)
Q Consensus 84 l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~c~~l~~l~~~---------------- 143 (463)
+++|.....+|.. +..+++|++|++++|.++.+ +..+..+++|++|++++|......+..
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 5554433333322 44455555555555544433 333444444444444444322222333
Q ss_pred ---------CCCCCCccEEEeeCCCCCC-cccccCCcccccccccccccccc--cc--hhhhCCCCccEeccccc
Q 012450 144 ---------FDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFER--IP--ESIIRLSKLSSLLVSYC 204 (463)
Q Consensus 144 ---------l~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~--lp--~~l~~l~~L~~L~L~~c 204 (463)
+..+++|+.|++++|.+.. .|..+..+++|++|++++|.++. ++ ..+..+++|+.|++++|
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 3444455555555554444 23344445555555555554432 11 23444555555555555
No 42
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.6e-19 Score=172.72 Aligned_cols=191 Identities=30% Similarity=0.434 Sum_probs=105.9
Q ss_pred CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCCccEE
Q 012450 6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLEL 82 (463)
Q Consensus 6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L 82 (463)
+++.+++++ +.++.+ |..+. ++|+.|++++| .++.++. +..+++|++|++++|.++.++.. +..+++|++|
T Consensus 17 ~~~~l~~~~-~~l~~i--p~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTAI--PSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTEEECTT-SCCSSC--CSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCCEEEccC-CCCCcc--CCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 345666665 445555 33332 45666666664 3444443 56666666666666666666554 3556666666
Q ss_pred eeecCCCCCccc-hhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCC
Q 012450 83 NLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCA 159 (463)
Q Consensus 83 ~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~ 159 (463)
++++|. +..+| ..+..+++|++|++++|.++.++. .+..+++|++|++++|. ++.++. .+..+++|+.|++++|.
T Consensus 91 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 91 WVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp ECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCc
Confidence 666653 33333 334556666666666666665543 24556666666666654 333332 24556666666666666
Q ss_pred CCCccc-ccCCcccccccccccccccccch-hhhCCCCccEeccccc
Q 012450 160 ITELPE-SLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYC 204 (463)
Q Consensus 160 l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c 204 (463)
+..++. .+..+++|++|++++|+++.+|. .+..+++|+.|++++|
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 665443 34555666666666666655543 2445555555555555
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=6.5e-20 Score=195.08 Aligned_cols=200 Identities=23% Similarity=0.220 Sum_probs=147.6
Q ss_pred cccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCcc---CccccCCCCccEEeeecCCCCCccchhcCCC
Q 012450 26 LIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEEL---PSSIGCLSRLLELNLGDCKNLKTLPSSLCKL 100 (463)
Q Consensus 26 ~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l 100 (463)
.+..+++|+.|++++|.....+|. +..+++|++|++++|.++.+ +..+..+++|++|++++|......|..+..+
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 399 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence 344444555555554433334443 66677777777777777654 4557778888888888776545556677888
Q ss_pred CCCcEEEEECCCCccC-C-ccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC--c--ccccCCccccc
Q 012450 101 KSLEEICLTGSAIEEL-P-SPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE--L--PESLGLLSSLE 174 (463)
Q Consensus 101 ~~L~~L~l~~~~i~~l-p-~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~--~--p~~l~~l~~L~ 174 (463)
++|+.|++++|.++.. + ..+..+++|++|++++|......+..+.++++|+.|++++|.+.+ + +..+..+++|+
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence 8888888888888754 2 347888999999999988666667778899999999999999876 2 25688999999
Q ss_pred cccccccccccc-chhhhCCCCccEeccccccccccCCCC---CCCccEeeccCcc
Q 012450 175 ELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCT 226 (463)
Q Consensus 175 ~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c~ 226 (463)
.|++++|+++.+ |..+..+++|+.|++++|......|.. .+.| .|+++++.
T Consensus 480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred EEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 999999999866 578899999999999999654444432 2456 78888764
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=2.6e-20 Score=195.69 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=46.6
Q ss_pred CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCC-CCCC-CCCCCCccEEEeeccC-CCccC-ccccCCC
Q 012450 2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLK-SLPE-ISSAGNIEKILLDGTA-IEELP-SSIGCLS 77 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~-~lp~-l~~l~~L~~L~L~~~~-i~~lp-~~i~~l~ 77 (463)
.++++|++|+|++| .++.++ +..++++++|++|++++|.... ..|. ++.+++|++|++++|. +..+| ..+..++
T Consensus 71 ~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 71 YSLGSLEHLDLSDN-HLSSLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTCTTCCEEECTTS-CCCSCC-HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred cccccCCEEECCCC-ccCccC-HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 45666666666663 344442 3346666666666666643221 2233 5566666666666654 44444 2355555
Q ss_pred CccEEeeecCCC
Q 012450 78 RLLELNLGDCKN 89 (463)
Q Consensus 78 ~L~~L~l~~c~~ 89 (463)
+|++|++++|..
T Consensus 149 ~L~~L~L~~n~l 160 (549)
T 2z81_A 149 SLNELEIKALSL 160 (549)
T ss_dssp EEEEEEEEETTC
T ss_pred ccCeeeccCCcc
Confidence 566666655543
No 45
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.83 E-value=3.1e-20 Score=178.07 Aligned_cols=204 Identities=22% Similarity=0.210 Sum_probs=148.0
Q ss_pred cCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCc-cccCCCCccEEeeecCCCCCc
Q 012450 16 NIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKT 92 (463)
Q Consensus 16 ~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~ 92 (463)
..++++ |..+. ++|++|++++| .++.++. +..+++|++|++++|.++.++. .+..+++|++|++++|.....
T Consensus 17 ~~l~~i--p~~l~--~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 17 LNFYKI--PDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp SCCSSC--CSSSC--TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCcccc--CCCCC--CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 345556 44443 57888888885 4555553 7788888888888888887765 578888888888888754444
Q ss_pred cchhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCC-cCcccCCCCCCccEEEeeCCCCCCcc-cccCC
Q 012450 93 LPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLK-SLKLPFDGLYSLTYLYLTDCAITELP-ESLGL 169 (463)
Q Consensus 93 lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~-~l~~~l~~l~~L~~L~L~~~~l~~~p-~~l~~ 169 (463)
.+..+.++++|++|++++|.++.++. .++.+++|++|++++|.... .+|..+.++++|+.|++++|.+++++ ..+..
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 44668888888888888888887765 57888888888888877433 25677888888888888888888753 45566
Q ss_pred ccccc----ccccccccccccchhhhCCCCccEeccccccccccCCC-C---CCCccEeeccCc
Q 012450 170 LSSLE----ELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK-L---PCNLYWLDAQHC 225 (463)
Q Consensus 170 l~~L~----~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~-l---~~~L~~L~i~~c 225 (463)
+++|+ .|++++|.++.++.......+|+.|++++|. ++.+|. . .++|+.|++++.
T Consensus 172 l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred hhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence 66666 7888888888877666666688888888885 555543 1 245555655543
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=1.2e-19 Score=186.79 Aligned_cols=203 Identities=21% Similarity=0.196 Sum_probs=150.8
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 82 (463)
++++|++|++++| .++.+ + .+..+++|++|++++| .++.+| ++.+++|++|++++|.++.++ ++.+++|++|
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~--~-~l~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDM--T-GIEKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSS-CCCCC--T-TGGGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred HcCCCCEEEccCC-CcccC--h-hhcccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 4688999999995 67777 4 6889999999999996 566676 888999999999999999886 7899999999
Q ss_pred eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC
Q 012450 83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE 162 (463)
Q Consensus 83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~ 162 (463)
++++|. +..+| ++.+++|+.|++++|.++.++ ++.+++|++|++++|..++.++ +..+++|+.|++++|.+++
T Consensus 112 ~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 112 NCDTNK-LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp ECCSSC-CSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCC
T ss_pred ECCCCc-CCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccce
Confidence 999974 55565 788999999999999998874 7788888888888887666663 5667777777777777777
Q ss_pred cccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCC-CCCCccEeeccCc
Q 012450 163 LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHC 225 (463)
Q Consensus 163 ~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~-l~~~L~~L~i~~c 225 (463)
+| +..+++|+.|++++|+++.++ +..+++|+.|++++|. ++.+|- -.++|+.|+++++
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVN 243 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSS
T ss_pred ec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCC
Confidence 65 556666666666666666553 5556666666666653 333431 1234555555443
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=5.8e-20 Score=195.50 Aligned_cols=222 Identities=22% Similarity=0.297 Sum_probs=173.7
Q ss_pred CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCCcc
Q 012450 4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRLL 80 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~ 80 (463)
+++++.|++++ +.++.++ +..+..+++|++|+|++|. +..++. ++.+++|++|+|++|.++.++.. ++.+++|+
T Consensus 50 l~~l~~l~l~~-~~l~~lp-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 50 LNNQKIVTFKN-STMRKLP-AALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GCCCSEEEESS-CEESEEC-THHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeC-CCCCCcC-HHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 47889999998 4677774 4567889999999999975 555553 89999999999999999988765 69999999
Q ss_pred EEeeecCCCCCccchh-cCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCCcCcc-cCC------------
Q 012450 81 ELNLGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFD------------ 145 (463)
Q Consensus 81 ~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~-~l~------------ 145 (463)
+|++++|. +..+|.. ++++++|+.|++++|.++.+++ .++.+++|++|++++|. ++.++. .+.
T Consensus 127 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 127 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECCSSCC
T ss_pred EEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcccCcc
Confidence 99999974 5667655 5899999999999999997755 68999999999999986 333321 010
Q ss_pred -------------------------CCCCccEEEeeCCCCCCcccccCCccccccccccccccccc-chhhhCCCCccEe
Q 012450 146 -------------------------GLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSL 199 (463)
Q Consensus 146 -------------------------~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L 199 (463)
..++|+.|+|++|.+++. ..+..+++|+.|+|++|.++.+ |..+..+++|+.|
T Consensus 205 ~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 205 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 112455566666666553 4678899999999999999865 6789999999999
Q ss_pred ccccccccccCCCC---CCCccEeeccCccccccccc
Q 012450 200 LVSYCERLQSLPKL---PCNLYWLDAQHCTTLESLSG 233 (463)
Q Consensus 200 ~L~~c~~l~~l~~l---~~~L~~L~i~~c~~L~~l~~ 233 (463)
+|++|. +..+|.. .++|+.|++++| .+..++.
T Consensus 284 ~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~ 318 (597)
T 3oja_B 284 YISNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVER 318 (597)
T ss_dssp ECTTSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGG
T ss_pred ECCCCC-CCCCCcccccCCCCcEEECCCC-CCCccCc
Confidence 999984 4555542 468999999987 3555554
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=1e-19 Score=192.21 Aligned_cols=82 Identities=21% Similarity=0.185 Sum_probs=56.4
Q ss_pred CCCCCccEEEeeCCCCCC-cccccCCcccccccccccccccccc---hhhhCCCCccEeccccccccccCCC----CCCC
Q 012450 145 DGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFERIP---ESIIRLSKLSSLLVSYCERLQSLPK----LPCN 216 (463)
Q Consensus 145 ~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~L~~c~~l~~l~~----l~~~ 216 (463)
..+++|+.|++++|.+.+ +|..+..+++|+.|++++|+++.++ ..+.++++|+.|++++|..-..+|. ..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 556777888888887777 6677777888888888888776543 4567777888888887754433443 2356
Q ss_pred ccEeeccCcc
Q 012450 217 LYWLDAQHCT 226 (463)
Q Consensus 217 L~~L~i~~c~ 226 (463)
|+.|+++++.
T Consensus 430 L~~L~l~~n~ 439 (562)
T 3a79_B 430 ILVLNLSSNM 439 (562)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCC
Confidence 6677776654
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=1.1e-20 Score=185.10 Aligned_cols=211 Identities=16% Similarity=0.156 Sum_probs=163.2
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 82 (463)
.+++|++|+|++| .++.++ +..+..+++|++|+|++|. +...+.+..+++|++|++++|.++.++. .++|++|
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQIS-AADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCC-HHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred cCCCCCEEECcCC-ccCcCC-HHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCccccccC----CCCcCEE
Confidence 4678999999995 555553 5678899999999999864 4445558889999999999998887663 4889999
Q ss_pred eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCCCCcCcccC-CCCCCccEEEeeCCCC
Q 012450 83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPF-DGLYSLTYLYLTDCAI 160 (463)
Q Consensus 83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~~l-~~l~~L~~L~L~~~~l 160 (463)
++++|. +..++. ..+++|+.|++++|.++.++. .+..+++|++|++++|......+..+ ..+++|+.|++++|.+
T Consensus 105 ~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 999875 444443 347889999999999987754 67788999999999987444334434 4688999999999999
Q ss_pred CCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCC---CCCccEeeccCc
Q 012450 161 TELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHC 225 (463)
Q Consensus 161 ~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c 225 (463)
++++.. ..+++|++|++++|+++.+|..+..+++|+.|++++| .++.+|.. .++|+.|+++++
T Consensus 182 ~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 182 YDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred cccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCC
Confidence 887644 3588999999999999988888889999999999998 45556542 245666666554
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=2.2e-20 Score=198.81 Aligned_cols=218 Identities=17% Similarity=0.156 Sum_probs=184.7
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCC---CC-CCCCCCccEEEeeccCCCccCccccCCCC
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL---PE-ISSAGNIEKILLDGTAIEELPSSIGCLSR 78 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l---p~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 78 (463)
.+++|++|++++|..+... .+..+++|+.|++++|. +..+ |. +..+++|++|++++|.++.+|..+..+++
T Consensus 326 ~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~ 400 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE 400 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTT
T ss_pred CCCccceeeccCCcCccch----hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCC
Confidence 5789999999998666554 46689999999999974 4433 44 78899999999999999999988999999
Q ss_pred ccEEeeecCCCCCccc-hhcCCCCCCcEEEEECCCCcc-CCccCCCCCCccEEecCCCCCCC-cCcccCCCCCCccEEEe
Q 012450 79 LLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEE-LPSPIECLSALCVLDLGDCKSLK-SLKLPFDGLYSLTYLYL 155 (463)
Q Consensus 79 L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l~~c~~l~-~l~~~l~~l~~L~~L~L 155 (463)
|+.|++++|......| ..+..+++|+.|++++|.++. .|..+..+++|++|++++|.... .+|..+..+++|+.|++
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 480 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEEC
Confidence 9999999987665555 578899999999999999986 56778999999999999987554 36777899999999999
Q ss_pred eCCCCCC-cccccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCCC----CCCCccEeeccCcc
Q 012450 156 TDCAITE-LPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPK----LPCNLYWLDAQHCT 226 (463)
Q Consensus 156 ~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~----l~~~L~~L~i~~c~ 226 (463)
++|.+++ .|..+..+++|++|++++|+++.+ |..+..+++|+.|++++|. ++.+|. +|.+|+.|++++++
T Consensus 481 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred CCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 9999998 467789999999999999999865 7889999999999999995 666664 44568888887764
No 51
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=1e-19 Score=170.74 Aligned_cols=195 Identities=16% Similarity=0.197 Sum_probs=165.6
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeec-cCCCccCc-cccCCCCcc
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDG-TAIEELPS-SIGCLSRLL 80 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~-~~i~~lp~-~i~~l~~L~ 80 (463)
++|++|++++ +.++.++ +..+.++++|++|++++|..++.++. +..+++|++|++++ |.++.++. .+..+++|+
T Consensus 31 ~~l~~L~l~~-n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIE-THLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEES-CCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CcccEEEEeC-CcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 4799999999 5577774 45788999999999999866888875 78999999999999 99998875 578999999
Q ss_pred EEeeecCCCCCccchhcCCCCCCc---EEEEECC-CCccCCcc-CCCCCCcc-EEecCCCCCCCcCcccCCCCCCccEEE
Q 012450 81 ELNLGDCKNLKTLPSSLCKLKSLE---EICLTGS-AIEELPSP-IECLSALC-VLDLGDCKSLKSLKLPFDGLYSLTYLY 154 (463)
Q Consensus 81 ~L~l~~c~~l~~lp~~l~~l~~L~---~L~l~~~-~i~~lp~~-i~~l~~L~-~L~l~~c~~l~~l~~~l~~l~~L~~L~ 154 (463)
+|++++|. ++.+|. +..+++|+ .|++++| .++.+|.. +..+++|+ .|++++|. ++.+|......++|+.|+
T Consensus 109 ~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~ 185 (239)
T 2xwt_C 109 FLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVY 185 (239)
T ss_dssp EEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEE
T ss_pred EEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEE
Confidence 99999975 566887 88888888 9999999 99988764 88999999 99999987 557776544458999999
Q ss_pred eeCCC-CCCcc-cccCCc-ccccccccccccccccchhhhCCCCccEeccccccc
Q 012450 155 LTDCA-ITELP-ESLGLL-SSLEELYLERNNFERIPESIIRLSKLSSLLVSYCER 206 (463)
Q Consensus 155 L~~~~-l~~~p-~~l~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~ 206 (463)
+++|. ++.+| ..+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++..
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 99995 98875 457788 9999999999999999865 789999999998754
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=1e-20 Score=184.90 Aligned_cols=221 Identities=20% Similarity=0.250 Sum_probs=136.8
Q ss_pred CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCC-CCCCCC-CC-------CCCCccEEEeeccCCC-ccCccc
Q 012450 4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSK-LKSLPE-IS-------SAGNIEKILLDGTAIE-ELPSSI 73 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~-l~~lp~-l~-------~l~~L~~L~L~~~~i~-~lp~~i 73 (463)
.++|++|+++++.. .+ |..+... |+.|++++|.. -..+|. +. .+++|++|++++|.++ .+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~--p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--AD--LGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEECTTHHHHCCTT--CC--CHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred CCCceeEeeccccc--cc--HHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 34567777777443 44 4444433 66677766432 112333 22 4677777777777776 566654
Q ss_pred --cCCCCccEEeeecCCCCCccchhcCCC-----CCCcEEEEECCCCccCC-ccCCCCCCccEEecCCCCCCCc--Cccc
Q 012450 74 --GCLSRLLELNLGDCKNLKTLPSSLCKL-----KSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSLKS--LKLP 143 (463)
Q Consensus 74 --~~l~~L~~L~l~~c~~l~~lp~~l~~l-----~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~--l~~~ 143 (463)
..+++|++|++++|. +..+|..+..+ ++|++|++++|.++.++ ..++.+++|++|++++|..... ++..
T Consensus 116 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 677777777777754 33336555554 77777777777777665 5677777777777777764332 2222
Q ss_pred C--CCCCCccEEEeeCCCCCCcc----cccCCcccccccccccccccccc--hhhhCCCCccEeccccccccccCCC-CC
Q 012450 144 F--DGLYSLTYLYLTDCAITELP----ESLGLLSSLEELYLERNNFERIP--ESIIRLSKLSSLLVSYCERLQSLPK-LP 214 (463)
Q Consensus 144 l--~~l~~L~~L~L~~~~l~~~p----~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~c~~l~~l~~-l~ 214 (463)
+ ..+++|+.|++++|.+..++ ..+..+++|++|++++|+++..+ ..+..+++|+.|++++|. ++.+|. ++
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc
Confidence 2 66777777777777777432 22345677777777777776533 344556777777777774 445654 34
Q ss_pred CCccEeeccCccccccccc
Q 012450 215 CNLYWLDAQHCTTLESLSG 233 (463)
Q Consensus 215 ~~L~~L~i~~c~~L~~l~~ 233 (463)
++|+.|+++++ .++.++.
T Consensus 274 ~~L~~L~Ls~N-~l~~~p~ 291 (312)
T 1wwl_A 274 AKLSVLDLSYN-RLDRNPS 291 (312)
T ss_dssp SEEEEEECCSS-CCCSCCC
T ss_pred CCceEEECCCC-CCCCChh
Confidence 56777777665 4555543
No 53
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=3.3e-20 Score=177.71 Aligned_cols=203 Identities=23% Similarity=0.287 Sum_probs=144.3
Q ss_pred ccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCc
Q 012450 25 SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLE 104 (463)
Q Consensus 25 ~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~ 104 (463)
.....+++|+.|++++| .++.++.+..+++|++|++++|.++.++ .+..+++|++|++++|......+..+.++++|+
T Consensus 35 ~~~~~l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp ECHHHHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccccceeeeeeCCC-CcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34556788888888875 5667777778888888888888887764 577888888888888754333344467788888
Q ss_pred EEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCCCCcccc-cCCcccccccccccc
Q 012450 105 EICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERN 181 (463)
Q Consensus 105 ~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l~~~p~~-l~~l~~L~~L~Ls~n 181 (463)
+|++++|.++.++.. +..+++|++|++++|. ++.++. .+..+++|+.|++++|.+++++.. +..+++|+.|++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 888888888877654 5778888888888875 444443 357788888888888888875543 577888888888888
Q ss_pred cccccch-hhhCCCCccEeccccccccccCCCCCCCccEeeccCcccccccccC
Q 012450 182 NFERIPE-SIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGL 234 (463)
Q Consensus 182 ~l~~lp~-~l~~l~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c~~L~~l~~~ 234 (463)
+++.++. .+..+++|+.|++++|+.... ++.+++|++..+.--..++..
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCC----TTTTHHHHHHHHHTGGGBBCT
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcccc----CcHHHHHHHHHHhCCCcccCc
Confidence 8876664 357788888888888854433 234566665554433344433
No 54
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=1.8e-19 Score=172.62 Aligned_cols=204 Identities=22% Similarity=0.276 Sum_probs=168.6
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCcc-ccCCCCccE
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSS-IGCLSRLLE 81 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~ 81 (463)
.+++|+.|++++| .++.+ ..+..+++|++|++++| .+..++.+..+++|++|++++|.++.++.. +..+++|++
T Consensus 39 ~l~~L~~L~l~~~-~i~~~---~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNS-DIKSV---QGIQYLPNVRYLALGGN-KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTS-CCCCC---TTGGGCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCC-Ccccc---cccccCCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 4578999999995 46665 46889999999999996 467777799999999999999999988765 689999999
Q ss_pred EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCC
Q 012450 82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAI 160 (463)
Q Consensus 82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l 160 (463)
|++++|......+..+..+++|+.|++++|.++.++.. +..+++|+.|++++|......+..+..+++|+.|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 99999865444445578999999999999999988765 58999999999999974433344468899999999999999
Q ss_pred CCccc-ccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCCCCCc
Q 012450 161 TELPE-SLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNL 217 (463)
Q Consensus 161 ~~~p~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~~~L 217 (463)
.+++. .+..+++|+.|++++|.+. ..+++|+.|+++.|.....+|....++
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 99654 4789999999999999875 346789999999987777777644333
No 55
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1e-19 Score=177.63 Aligned_cols=191 Identities=23% Similarity=0.368 Sum_probs=165.2
Q ss_pred cccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcE
Q 012450 26 LIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEE 105 (463)
Q Consensus 26 ~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 105 (463)
....+++|+.|++++| .+..+|.+..+++|++|++++|.++.++. +..+++|++|++++|. +..++ .+..+++|+.
T Consensus 36 ~~~~l~~L~~L~l~~~-~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 36 TQADLDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKT 111 (308)
T ss_dssp CHHHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCE
T ss_pred cHHHcCCcCEEEeeCC-CccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCE
Confidence 4557899999999996 67888889999999999999999999888 8999999999999975 66666 5889999999
Q ss_pred EEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccc
Q 012450 106 ICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFER 185 (463)
Q Consensus 106 L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~ 185 (463)
|++++|.++.++. +..+++|++|++++|. ++.++. +..+++|+.|++++|.+.+++. +..+++|+.|++++|+++.
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc
Confidence 9999999999875 8999999999999986 566665 8899999999999999999876 8999999999999999998
Q ss_pred cchhhhCCCCccEeccccccccccCCCC--CCCccEeeccCcc
Q 012450 186 IPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQHCT 226 (463)
Q Consensus 186 lp~~l~~l~~L~~L~L~~c~~l~~l~~l--~~~L~~L~i~~c~ 226 (463)
++. +..+++|+.|++++|. ++.++.+ .++|+.|++++++
T Consensus 188 ~~~-l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 188 ISP-LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CGG-GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEEE
T ss_pred Chh-hcCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCCe
Confidence 885 8899999999999984 4444432 3567777776653
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=3.4e-20 Score=192.45 Aligned_cols=212 Identities=16% Similarity=0.136 Sum_probs=168.5
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 82 (463)
.+++|++|+|++| .++.++ +..+..+++|++|+|++|. +...+.++.+++|++|+|++|.++.+|. .++|++|
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQIS-AADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCC-GGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCC-cCCCCC-HHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 4568999999995 556553 6789999999999999964 5444458899999999999999887764 3889999
Q ss_pred eeecCCCCCccchhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCCCCcCcccCC-CCCCccEEEeeCCCC
Q 012450 83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPFD-GLYSLTYLYLTDCAI 160 (463)
Q Consensus 83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~l~~~l~-~l~~L~~L~L~~~~l 160 (463)
++++|.. ..++. ..+++|+.|++++|.++.+ |..++.+++|+.|++++|......|..+. .+++|+.|+|++|.+
T Consensus 105 ~L~~N~l-~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNI-SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCC-CCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcC-CCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999754 44443 3578899999999999876 55778899999999999875554555554 789999999999999
Q ss_pred CCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCC---CCCccEeeccCcc
Q 012450 161 TELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHCT 226 (463)
Q Consensus 161 ~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c~ 226 (463)
+++|. ...+++|+.|+|++|.++.+|..+..+++|+.|++++|. +..+|.. .++|+.|++.+++
T Consensus 182 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 182 YDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred ccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence 98765 346899999999999999998889999999999999984 4455542 2466677776653
No 57
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=3.9e-19 Score=183.39 Aligned_cols=190 Identities=19% Similarity=0.299 Sum_probs=103.9
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 82 (463)
.+++|++|+|++| .++.+ +. +.++++|++|++++| .+..++.++.+++|++|++++|.++.++. +..+++|++|
T Consensus 66 ~l~~L~~L~Ls~n-~l~~~--~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 66 YLNNLTQINFSNN-QLTDI--TP-LKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred hhcCCCEEECCCC-ccCCc--hh-hhccccCCEEECCCC-ccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 4667777777764 45555 33 666666666666664 34444446666666666666666665544 5555666666
Q ss_pred eeecCCCCCccc--------------------hhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcc
Q 012450 83 NLGDCKNLKTLP--------------------SSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKL 142 (463)
Q Consensus 83 ~l~~c~~l~~lp--------------------~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~ 142 (463)
++++|. +..++ ..+.++++|+.|++++|.++.++ .+..+++|++|++++|.. ..++.
T Consensus 140 ~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l-~~~~~ 216 (466)
T 1o6v_A 140 ELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQI-SDITP 216 (466)
T ss_dssp EEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC-CCCGG
T ss_pred ECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcc-ccccc
Confidence 655543 11111 12556667777777777766654 356666677777766653 22222
Q ss_pred cCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEeccccc
Q 012450 143 PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYC 204 (463)
Q Consensus 143 ~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c 204 (463)
+..+++|+.|++++|.+.+++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|
T Consensus 217 -~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN 275 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS
T ss_pred -ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCC
Confidence 444555555555555555442 24444555555555554444432 444444444444444
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=1.8e-19 Score=185.35 Aligned_cols=192 Identities=26% Similarity=0.367 Sum_probs=118.7
Q ss_pred cCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEEC
Q 012450 31 NKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG 110 (463)
Q Consensus 31 ~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 110 (463)
++|+.|++++| .++.+|.. +++|++|++++|.++.++.. .++|++|++++|. ++.+| .++++++|++|++++
T Consensus 91 ~~L~~L~l~~n-~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 91 PHLESLVASCN-SLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TTCSEEECCSS-CCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEEccCC-cCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCC
Confidence 34555555543 33334431 24555555555555544431 1567777777653 44566 467777777777777
Q ss_pred CCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhh
Q 012450 111 SAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESI 190 (463)
Q Consensus 111 ~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l 190 (463)
|.++.+|..+ .+|++|++++|. ++.+| .+.++++|+.|++++|.+.++|... ++|++|++++|.++.+| .+
T Consensus 163 N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp-~~ 233 (454)
T 1jl5_A 163 NSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP-EL 233 (454)
T ss_dssp SCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCC-CC
T ss_pred CcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCccc-cc
Confidence 7777766543 467777777764 44566 3677777777777777777765432 47777777777777777 37
Q ss_pred hCCCCccEeccccccccccCCCCCCCccEeeccCcccccccccCCCCceeE
Q 012450 191 IRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTTLESLSGLFSSYKCV 241 (463)
Q Consensus 191 ~~l~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c~~L~~l~~~~~~~~~~ 241 (463)
..+++|+.|++++| .++.+|..+++|+.|+++++. ++.++.....+..+
T Consensus 234 ~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L 282 (454)
T 1jl5_A 234 QNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNY-LTDLPELPQSLTFL 282 (454)
T ss_dssp TTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSSC-CSCCCCCCTTCCEE
T ss_pred CCCCCCCEEECCCC-cCCcccccccccCEEECCCCc-ccccCcccCcCCEE
Confidence 77778888888776 455667667777777777653 44454443334333
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=2.1e-18 Score=183.47 Aligned_cols=203 Identities=29% Similarity=0.371 Sum_probs=116.1
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEee
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l 84 (463)
++|++|+|++| .++.+ +. .+++|++|+|++| .++.+|. .+++|++|++++|.++.+|. .+++|+.|++
T Consensus 61 ~~L~~L~L~~N-~l~~l--p~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSL--PA---LPPELRTLEVSGN-QLTSLPV--LPPGLLELSIFSNPLTHLPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSC-CCSCC--CC---CCTTCCEEEECSC-CCSCCCC--CCTTCCEEEECSCCCCCCCC---CCTTCCEEEC
T ss_pred CCCcEEEecCC-CCCCC--CC---cCCCCCEEEcCCC-cCCcCCC--CCCCCCEEECcCCcCCCCCC---CCCCcCEEEC
Confidence 35555555553 34444 22 3455666666654 3445554 45566666666666665554 3455666666
Q ss_pred ecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCC-----------------CCccEEecCCCCCCCcCcccCCCC
Q 012450 85 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECL-----------------SALCVLDLGDCKSLKSLKLPFDGL 147 (463)
Q Consensus 85 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l-----------------~~L~~L~l~~c~~l~~l~~~l~~l 147 (463)
++| .+..+|.. +++|++|++++|.++.+|..+..+ ++|+.|++++|. ++.+|. .+
T Consensus 129 ~~N-~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-l~~l~~---~~ 200 (622)
T 3g06_A 129 FGN-QLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ-LASLPT---LP 200 (622)
T ss_dssp CSS-CCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSCCCC---CC
T ss_pred CCC-CCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC-CCCCCC---cc
Confidence 654 34445542 356666666666666555432211 333444444333 222322 12
Q ss_pred CCccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCCCCCccEeeccCccc
Q 012450 148 YSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHCTT 227 (463)
Q Consensus 148 ~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c~~ 227 (463)
++|+.|++++|.++.+|. .+++|+.|++++|.++.+| ..+++|+.|++++| .++.+|..+++|+.|++++| .
T Consensus 201 ~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N-~ 272 (622)
T 3g06_A 201 SELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRN-Q 272 (622)
T ss_dssp TTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-C
T ss_pred chhhEEECcCCcccccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCC-C
Confidence 344445555554444443 2367788888888887777 45678888888887 56778877788888888886 5
Q ss_pred ccccccCC
Q 012450 228 LESLSGLF 235 (463)
Q Consensus 228 L~~l~~~~ 235 (463)
++.++..+
T Consensus 273 L~~lp~~l 280 (622)
T 3g06_A 273 LTRLPESL 280 (622)
T ss_dssp CCSCCGGG
T ss_pred CCcCCHHH
Confidence 66666544
No 60
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=6.5e-19 Score=181.72 Aligned_cols=210 Identities=25% Similarity=0.404 Sum_probs=149.5
Q ss_pred CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccE
Q 012450 2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLE 81 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 81 (463)
..+++|++|++++ .+... ..+.++++|+.|++++| .+..++.+..+++|++|++++|.++.++. ++.+++|+.
T Consensus 153 ~~l~~L~~L~l~~--~~~~~---~~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 225 (466)
T 1o6v_A 153 SGLTSLQQLSFGN--QVTDL---KPLANLTTLERLDISSN-KVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDE 225 (466)
T ss_dssp TTCTTCSEEEEEE--SCCCC---GGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCE
T ss_pred ccCCcccEeecCC--cccCc---hhhccCCCCCEEECcCC-cCCCChhhccCCCCCEEEecCCccccccc-ccccCCCCE
Confidence 4677888888853 34444 33777888888888875 46666667778888888888887776655 667788888
Q ss_pred EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCC
Q 012450 82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAIT 161 (463)
Q Consensus 82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~ 161 (463)
|++++|. +..++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|. +..++. +..+++|+.|++++|.+.
T Consensus 226 L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~ 300 (466)
T 1o6v_A 226 LSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLE 300 (466)
T ss_dssp EECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCS
T ss_pred EECCCCC-cccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCccc
Confidence 8888764 44444 46677888888888888777665 6777888888888775 444554 677778888888888777
Q ss_pred CcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCC--CCCccEeeccCcc
Q 012450 162 ELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL--PCNLYWLDAQHCT 226 (463)
Q Consensus 162 ~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l--~~~L~~L~i~~c~ 226 (463)
+++. +..+++|+.|++++|+++.++. +..+++|+.|++++| .+..++.+ .++|+.|++++|.
T Consensus 301 ~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 301 DISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred Cchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc
Confidence 7654 6677888888888887776654 677788888888877 34444432 3567777777764
No 61
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=6.6e-19 Score=194.71 Aligned_cols=111 Identities=17% Similarity=0.161 Sum_probs=56.6
Q ss_pred CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCc-cCcc--ccCCC
Q 012450 2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEE-LPSS--IGCLS 77 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~-lp~~--i~~l~ 77 (463)
.++++|++|+|++|.....++ +..+.++++|++|+|++|......|. ++.+++|++|+|++|.++. +|.. ++.++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred cccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 345555555555554444432 34455555555555555433222233 5555555555555555553 3332 55555
Q ss_pred CccEEeeecCCCCCccc-hhcCCCCCCcEEEEECCCC
Q 012450 78 RLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAI 113 (463)
Q Consensus 78 ~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i 113 (463)
+|++|++++|......+ ..++++++|++|++++|.+
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 66666665554332222 3455566666666665544
No 62
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=8.4e-20 Score=178.23 Aligned_cols=192 Identities=15% Similarity=0.069 Sum_probs=127.4
Q ss_pred CcCccEEeeecCCCCCCCCC-C--CCCCCccEEEeeccCCCcc-C----ccccCCCCccEEeeecCCCCCccchhcCCCC
Q 012450 30 LNKLVILNLSGCSKLKSLPE-I--SSAGNIEKILLDGTAIEEL-P----SSIGCLSRLLELNLGDCKNLKTLPSSLCKLK 101 (463)
Q Consensus 30 l~~L~~L~L~~c~~l~~lp~-l--~~l~~L~~L~L~~~~i~~l-p----~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 101 (463)
+++|++|++++|...+..|. + ..+++|++|++++|.++.. + ..+..+++|++|++++|......+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 45688888887765555655 4 7777888888888777642 2 2234577788888887765444556677778
Q ss_pred CCcEEEEECCCCcc---CC--ccCCCCCCccEEecCCCCCCCcCccc----CCCCCCccEEEeeCCCCCCc-ccccCCc-
Q 012450 102 SLEEICLTGSAIEE---LP--SPIECLSALCVLDLGDCKSLKSLKLP----FDGLYSLTYLYLTDCAITEL-PESLGLL- 170 (463)
Q Consensus 102 ~L~~L~l~~~~i~~---lp--~~i~~l~~L~~L~l~~c~~l~~l~~~----l~~l~~L~~L~L~~~~l~~~-p~~l~~l- 170 (463)
+|++|++++|.+.. ++ ..+..+++|++|++++|. ++.++.. +..+++|++|+|++|.+.+. |..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 88888888877642 32 233567778888888775 4444431 35667788888888887774 6666555
Q ss_pred --ccccccccccccccccchhhhCCCCccEeccccccccccCC--CCCCCccEeeccCc
Q 012450 171 --SSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLP--KLPCNLYWLDAQHC 225 (463)
Q Consensus 171 --~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~--~l~~~L~~L~i~~c 225 (463)
++|++|+|++|+++.+|..+. ++|+.|++++|. ++.+| ...++|+.|++++.
T Consensus 249 ~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC-CCSCCCTTSCCCCSCEECSST
T ss_pred CcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc-CCCCchhhhCCCccEEECcCC
Confidence 578888888888877776553 678888888774 33333 23356666666554
No 63
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=1e-18 Score=188.41 Aligned_cols=226 Identities=23% Similarity=0.250 Sum_probs=152.7
Q ss_pred CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCC-CCCCCC--CC--CCCCccEEEeeccCCCcc-CccccCCC
Q 012450 4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSK-LKSLPE--IS--SAGNIEKILLDGTAIEEL-PSSIGCLS 77 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~-l~~lp~--l~--~l~~L~~L~L~~~~i~~l-p~~i~~l~ 77 (463)
+++|++|++++|. ++.++ +..+.++++|++|++++|.. +..++. +. ..++|+.|++++|.++.+ |..+..++
T Consensus 328 l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 328 LKCLEHLNMEDND-IPGIK-SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp CTTCCEEECCSCC-BCCCC-TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCCCEEECCCCc-cCCCC-hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence 4455555555432 22221 33455555555555555421 222221 11 124566666666666655 45678889
Q ss_pred CccEEeeecCCCCCccc-hhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCC--CCcCcccCCCCCCccEE
Q 012450 78 RLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKS--LKSLKLPFDGLYSLTYL 153 (463)
Q Consensus 78 ~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~--l~~l~~~l~~l~~L~~L 153 (463)
+|+.|++++|.....+| ..+.++++|+.|++++|.+..+ +..+..+++|+.|++++|.. +..+|..+..+++|+.|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 99999999976555565 5688899999999999988765 44677888999999988763 24567778888889999
Q ss_pred EeeCCCCCCccc-ccCCcccccccccccccccccch---------hhhCCCCccEeccccccccccCCC----CCCCccE
Q 012450 154 YLTDCAITELPE-SLGLLSSLEELYLERNNFERIPE---------SIIRLSKLSSLLVSYCERLQSLPK----LPCNLYW 219 (463)
Q Consensus 154 ~L~~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp~---------~l~~l~~L~~L~L~~c~~l~~l~~----l~~~L~~ 219 (463)
++++|.++.++. .+..+++|++|++++|+++.++. .+..+++|+.|++++| .++.+|. -.++|+.
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcce
Confidence 999998888654 47788889999999988876532 2677888999999887 4556664 1357888
Q ss_pred eeccCccccccccc
Q 012450 220 LDAQHCTTLESLSG 233 (463)
Q Consensus 220 L~i~~c~~L~~l~~ 233 (463)
|+++++ .++.++.
T Consensus 565 L~Ls~N-~l~~l~~ 577 (680)
T 1ziw_A 565 IDLGLN-NLNTLPA 577 (680)
T ss_dssp EECCSS-CCCCCCT
T ss_pred eECCCC-CCCcCCH
Confidence 888664 5666654
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=6.2e-19 Score=168.95 Aligned_cols=198 Identities=20% Similarity=0.245 Sum_probs=139.3
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccC-ccccCCCCccE
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELP-SSIGCLSRLLE 81 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~ 81 (463)
++|++|++++| .++.++ +..+.++++|++|++++| .+..++. +..+++|++|++++|.++.++ ..+..+++|++
T Consensus 28 ~~l~~L~ls~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLG-SYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTC-CCCEEC-TTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCC-cccccC-HhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 35788888874 455552 346777888888888886 4555554 777888888888888887665 45777888888
Q ss_pred EeeecCCCCCccchhcCCCCCCcEEEEECCCCcc--CCccCCCCCCccEEecCCCCCCCcCcccCCCCCCcc----EEEe
Q 012450 82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE--LPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLT----YLYL 155 (463)
Q Consensus 82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~----~L~L 155 (463)
|++++|......+..+..+++|++|++++|.++. +|..+..+++|++|++++|......+..+..+++|+ .|++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 8888765433333357778888888888888875 577778888888888887763332333344444444 7888
Q ss_pred eCCCCCCcccccCCcccccccccccccccccchh-hhCCCCccEecccccc
Q 012450 156 TDCAITELPESLGLLSSLEELYLERNNFERIPES-IIRLSKLSSLLVSYCE 205 (463)
Q Consensus 156 ~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~c~ 205 (463)
++|.+..++.......+|+.|++++|+++.+|.. +..+++|+.|++++|+
T Consensus 185 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 8888877766666666788888888888777654 4678888888888774
No 65
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=6.2e-19 Score=190.19 Aligned_cols=228 Identities=25% Similarity=0.266 Sum_probs=145.8
Q ss_pred CCCCCcceeecccccC-cCCCCCcccccC--CcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCC-ccC-ccccC
Q 012450 2 QHHGKLNQIIMAACNI-FTKTPNPSLIQH--LNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIE-ELP-SSIGC 75 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~-l~~~~~~~~~~~--l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~-~lp-~~i~~ 75 (463)
.++++|++|++++|.. +..++ ...+.. .++|+.|++++|......|. +..+++|+.|++++|.+. .+| ..+..
T Consensus 350 ~~l~~L~~L~Ls~n~~~~~~l~-~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 428 (680)
T 1ziw_A 350 TGLINLKYLSLSNSFTSLRTLT-NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428 (680)
T ss_dssp TTCTTCCEEECTTCBSCCCEEC-TTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT
T ss_pred ccccCCcEEECCCCchhhhhcc-hhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC
Confidence 5678899999988642 22221 112222 25778888887654444444 777778888888887776 354 45677
Q ss_pred CCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCc---cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccE
Q 012450 76 LSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE---ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTY 152 (463)
Q Consensus 76 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~ 152 (463)
+++|++|++++|......+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|......+..+.++++|+.
T Consensus 429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 508 (680)
T 1ziw_A 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508 (680)
T ss_dssp CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCE
Confidence 777888888777644444556667777777777777664 45666777777777777776633333334667777777
Q ss_pred EEeeCCCCCCccc---------ccCCcccccccccccccccccch-hhhCCCCccEeccccccccccCCCC----CCCcc
Q 012450 153 LYLTDCAITELPE---------SLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCERLQSLPKL----PCNLY 218 (463)
Q Consensus 153 L~L~~~~l~~~p~---------~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~l~~l----~~~L~ 218 (463)
|++++|.++.++. .+..+++|+.|++++|+++.+|. .+..+++|+.|++++| .++.+|.. .++|+
T Consensus 509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~ 587 (680)
T 1ziw_A 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLK 587 (680)
T ss_dssp EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCC
Confidence 7777777765321 25667777777777777777764 4667777777777766 34455531 25677
Q ss_pred EeeccCcccccccc
Q 012450 219 WLDAQHCTTLESLS 232 (463)
Q Consensus 219 ~L~i~~c~~L~~l~ 232 (463)
.|+++++ .++.++
T Consensus 588 ~L~L~~N-~l~~~~ 600 (680)
T 1ziw_A 588 SLNLQKN-LITSVE 600 (680)
T ss_dssp EEECTTS-CCCBCC
T ss_pred EEECCCC-cCCccC
Confidence 7777665 344443
No 66
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=1.7e-18 Score=182.68 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=86.7
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCC-CC-CCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-p~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 82 (463)
++|++|+|++| .++.++ +..+.++++|++|+|++| .++.+ |. ++.+++|++|++++|.++++|.. .+++|++|
T Consensus 52 ~~L~~L~Ls~N-~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQN-SISELR-MPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSS-CCCCCC-GGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEE
T ss_pred CCcCEEECCCC-CccccC-hhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEE
Confidence 57888888884 455553 467788888888888886 44444 44 77888888888888888888776 78888888
Q ss_pred eeecCCCCC-ccchhcCCCCCCcEEEEECCCCccCCccCCCCCCc--cEEecCCCCC
Q 012450 83 NLGDCKNLK-TLPSSLCKLKSLEEICLTGSAIEELPSPIECLSAL--CVLDLGDCKS 136 (463)
Q Consensus 83 ~l~~c~~l~-~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L--~~L~l~~c~~ 136 (463)
++++|.... .+|..++++++|++|++++|.++.. .+..+++| +.|++++|..
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 888865333 2346778888888888888777642 23334444 6666666543
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=9.2e-19 Score=182.82 Aligned_cols=213 Identities=19% Similarity=0.193 Sum_probs=167.6
Q ss_pred CCcceeecccccCcCCCCCcccc-----cCCcCccEEeeecCCCCCCCCC--CCCC---CCccEEEeeccCCCccCcccc
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLI-----QHLNKLVILNLSGCSKLKSLPE--ISSA---GNIEKILLDGTAIEELPSSIG 74 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~-----~~l~~L~~L~L~~c~~l~~lp~--l~~l---~~L~~L~L~~~~i~~lp~~i~ 74 (463)
++|++|++++|...+.+ |..+ ..+++|+.+++++|.. .+|. +..+ .+|+.|++++|.+..++. ..
T Consensus 247 ~~L~~L~l~~n~l~~~~--p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~ 321 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQL--DFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PS 321 (520)
T ss_dssp SSCSEEEEEEEEEESCC--CCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CS
T ss_pred CcccEEEeecccccCcc--ccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hh
Confidence 46777777776544466 5556 7788888888888654 6663 3322 578888888888775542 26
Q ss_pred CCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCcc---CCccCCCCCCccEEecCCCCCCCcCccc-CCCCCCc
Q 012450 75 CLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE---LPSPIECLSALCVLDLGDCKSLKSLKLP-FDGLYSL 150 (463)
Q Consensus 75 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~---lp~~i~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L 150 (463)
.+++|++|++++|.....+|..+..+++|+.|++++|.++. +|..+..+++|++|++++|.....+|.. +..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 88999999999987777788889999999999999999985 4567899999999999999855547754 7788999
Q ss_pred cEEEeeCCCCCC-cccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCC----CCCccEeeccCc
Q 012450 151 TYLYLTDCAITE-LPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL----PCNLYWLDAQHC 225 (463)
Q Consensus 151 ~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l----~~~L~~L~i~~c 225 (463)
+.|++++|.+++ +|..+. ++|+.|++++|+++.+|..+..+++|+.|++++| .++.+|.. .++|+.|+++++
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCC
Confidence 999999999976 555443 7999999999999999998889999999999998 46667652 245666666654
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=4.9e-18 Score=174.60 Aligned_cols=197 Identities=28% Similarity=0.384 Sum_probs=135.9
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEee
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l 84 (463)
++|++|++++ +.++.+ |.. +++|+.|++++| .+..+|.+. ++|++|++++|.++.+| .++.+++|++|++
T Consensus 91 ~~L~~L~l~~-n~l~~l--p~~---~~~L~~L~l~~n-~l~~l~~~~--~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASC-NSLTEL--PEL---PQSLKSLLVDNN-NLKALSDLP--PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCS-SCCSSC--CCC---CTTCCEEECCSS-CCSCCCSCC--TTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccC-CcCCcc--ccc---cCCCcEEECCCC-ccCcccCCC--CCCCEEECcCCCCCCCc-ccCCCCCCCEEEC
Confidence 4677777776 445555 332 367888888875 555555432 67888888888888777 4778888888888
Q ss_pred ecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc
Q 012450 85 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP 164 (463)
Q Consensus 85 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p 164 (463)
++|. ++.+|.. ..+|++|++++|.++.+| .++.+++|++|++++|. ++.+|.. .++|+.|++++|.+..+|
T Consensus 161 ~~N~-l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~n~l~~lp 231 (454)
T 1jl5_A 161 DNNS-LKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL---PLSLESIVAGNNILEELP 231 (454)
T ss_dssp CSSC-CSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC---CTTCCEEECCSSCCSSCC
T ss_pred CCCc-CcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC---cCcccEEECcCCcCCccc
Confidence 8763 5556653 347888888888887776 57778888888887775 4445432 246777777777777776
Q ss_pred cccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCCCCCccEeeccCc
Q 012450 165 ESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLPCNLYWLDAQHC 225 (463)
Q Consensus 165 ~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c 225 (463)
. ++.+++|++|++++|+++.+|.. +++|+.|++++|. ++.+|..+++|+.|+++++
T Consensus 232 ~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 232 E-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp C-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred c-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence 3 67777777777777777766642 3667777777763 5556666667777777665
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=3.9e-18 Score=162.96 Aligned_cols=176 Identities=25% Similarity=0.374 Sum_probs=150.0
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCCccE
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLE 81 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~ 81 (463)
++|++|+|++| .++.++ +..+.++++|++|++++| .++.+|. +..+++|++|++++|.++.++.. +..+++|++
T Consensus 37 ~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLP-SKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSS-CCSCCC-TTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred CCCCEEECcCC-CCCeeC-HHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence 57999999995 567773 457899999999999996 5677776 68899999999999999988765 688999999
Q ss_pred EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCc-ccCCCCCCccEEEeeCCC
Q 012450 82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDCA 159 (463)
Q Consensus 82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~L~~~~ 159 (463)
|++++|......+..+..+++|++|++++|.++.+|.. +..+++|++|++++|. ++.++ ..+.++++|+.|++++|.
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCc
Confidence 99999765444456688999999999999999998875 7899999999999987 44454 457889999999999999
Q ss_pred CCCccc-ccCCccccccccccccccc
Q 012450 160 ITELPE-SLGLLSSLEELYLERNNFE 184 (463)
Q Consensus 160 l~~~p~-~l~~l~~L~~L~Ls~n~l~ 184 (463)
++.+|. .+..+++|+.|++++|.+.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 193 LKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcCCHHHhccccCCCEEEecCCCee
Confidence 999775 4778999999999999874
No 70
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=4.2e-18 Score=188.28 Aligned_cols=235 Identities=21% Similarity=0.227 Sum_probs=153.4
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCcc-CccccCCCCccEE
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLEL 82 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L 82 (463)
++|+.|+|++|...... +..+..+++|+.|+|++|......|. +..+++|++|++++|.++.+ |..+..+++|+.|
T Consensus 266 ~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLN--SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp SCCCEEECTTCCCCEEC--SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred CCccEEECCCCcccccC--hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence 67888888875433333 56677788888888887643333343 77788888888888887765 5567778888888
Q ss_pred eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCc-------------------c----------------------CC
Q 012450 83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-------------------P----------------------IE 121 (463)
Q Consensus 83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-------------------~----------------------i~ 121 (463)
++++|......+..+..+++|+.|++++|.++.++. . +.
T Consensus 344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~ 423 (844)
T 3j0a_A 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423 (844)
T ss_dssp ECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHT
T ss_pred ECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhh
Confidence 888764333333456677777777777777665432 1 12
Q ss_pred CCCCccEEecCCCCCCCcCcc--cCCCCCCccEEEeeCCCCCC------cccccCCcccccccccccccccccch-hhhC
Q 012450 122 CLSALCVLDLGDCKSLKSLKL--PFDGLYSLTYLYLTDCAITE------LPESLGLLSSLEELYLERNNFERIPE-SIIR 192 (463)
Q Consensus 122 ~l~~L~~L~l~~c~~l~~l~~--~l~~l~~L~~L~L~~~~l~~------~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~ 192 (463)
.+++|+.|++++|.. +.++. .+..+++|+.|++++|.+.. .+..+..+++|+.|+|++|+++.+|. .+..
T Consensus 424 ~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 502 (844)
T 3j0a_A 424 RVPHLQILILNQNRF-SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502 (844)
T ss_dssp TCTTCCEEEEESCCC-CCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS
T ss_pred cCCccceeeCCCCcc-cccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccc
Confidence 445555555555542 22111 13345666666666666653 23446788899999999999987664 4688
Q ss_pred CCCccEeccccccccccCCC--CCCCccEeeccCcccccccccCCCCceeEEE
Q 012450 193 LSKLSSLLVSYCERLQSLPK--LPCNLYWLDAQHCTTLESLSGLFSSYKCVFF 243 (463)
Q Consensus 193 l~~L~~L~L~~c~~l~~l~~--l~~~L~~L~i~~c~~L~~l~~~~~~~~~~~~ 243 (463)
+++|+.|+|++| .++.+|. ++++|+.|+++++.--...+..+..+..+.+
T Consensus 503 l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l 554 (844)
T 3j0a_A 503 LTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDI 554 (844)
T ss_dssp CCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEE
T ss_pred hhhhheeECCCC-CCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEe
Confidence 999999999998 4666654 4578999999887543334444445554443
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=1.2e-19 Score=177.86 Aligned_cols=217 Identities=14% Similarity=0.074 Sum_probs=172.5
Q ss_pred CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccE
Q 012450 2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLE 81 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 81 (463)
+++++|++|+|++| .++.. ++ +..+++|++|++++| .++.++ ..++|++|++++|.++.++.. .+++|++
T Consensus 55 ~~l~~L~~L~Ls~n-~l~~~--~~-~~~l~~L~~L~Ls~n-~l~~l~---~~~~L~~L~l~~n~l~~~~~~--~~~~L~~ 124 (317)
T 3o53_A 55 APFTKLELLNLSSN-VLYET--LD-LESLSTLRTLDLNNN-YVQELL---VGPSIETLHAANNNISRVSCS--RGQGKKN 124 (317)
T ss_dssp TTCTTCCEEECTTS-CCEEE--EE-ETTCTTCCEEECCSS-EEEEEE---ECTTCCEEECCSSCCSEEEEC--CCSSCEE
T ss_pred hCCCcCCEEECCCC-cCCcc--hh-hhhcCCCCEEECcCC-cccccc---CCCCcCEEECCCCccCCcCcc--ccCCCCE
Confidence 57899999999995 45555 33 889999999999996 455444 458999999999999987754 4789999
Q ss_pred EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCC-ccC-CCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCC
Q 012450 82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPI-ECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCA 159 (463)
Q Consensus 82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~i-~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~ 159 (463)
|++++|......+..+..+++|+.|++++|.++.++ ..+ ..+++|++|++++|. ++.++. ...+++|+.|++++|.
T Consensus 125 L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNK 202 (317)
T ss_dssp EECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSC
T ss_pred EECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCCc
Confidence 999997655544557888999999999999998764 334 478999999999987 556654 4468999999999999
Q ss_pred CCCcccccCCcccccccccccccccccchhhhCCCCccEecccccccc-ccCCCC---CCCccEeeccCcccccc
Q 012450 160 ITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERL-QSLPKL---PCNLYWLDAQHCTTLES 230 (463)
Q Consensus 160 l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l-~~l~~l---~~~L~~L~i~~c~~L~~ 230 (463)
++++|..+..+++|+.|++++|+++.+|..+..+++|+.|++++|+.. ..++.. .+.|+.|++.++..++.
T Consensus 203 l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 999888899999999999999999999999999999999999998654 233321 23456666665555443
No 72
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=7.9e-19 Score=185.05 Aligned_cols=217 Identities=19% Similarity=0.176 Sum_probs=132.8
Q ss_pred CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccE
Q 012450 2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLE 81 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 81 (463)
+.+++|++|++++| .++++ +..+..+ +|+.|++++|. +..+|. ..+++|+.|++++|.+...... ..+++|++
T Consensus 279 ~~l~~L~~L~l~~~-~l~~l--~~~~~~~-~L~~L~l~~n~-~~~l~~-~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~ 351 (570)
T 2z63_A 279 NCLTNVSSFSLVSV-TIERV--KDFSYNF-GWQHLELVNCK-FGQFPT-LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEF 351 (570)
T ss_dssp GGGTTCSEEEEESC-EECSC--CBCCSCC-CCSEEEEESCB-CSSCCB-CBCSSCCEEEEESCBSCCBCCC-CBCTTCCE
T ss_pred cCcCcccEEEecCc-cchhh--hhhhccC-CccEEeeccCc-ccccCc-ccccccCEEeCcCCcccccccc-ccCCCCCE
Confidence 35688999999885 46667 6777777 88888888864 446665 4566677777777665533222 55666777
Q ss_pred EeeecCCCCCc--cchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCc-ccCCCCCCccEEEeeCC
Q 012450 82 LNLGDCKNLKT--LPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDC 158 (463)
Q Consensus 82 L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~L~~~ 158 (463)
|++++|..... .|..+..+++|+.|++++|.++.++..+..+++|++|++++|......+ ..+..+++|+.|++++|
T Consensus 352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 431 (570)
T 2z63_A 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431 (570)
T ss_dssp EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred EeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence 77766542221 1455566666666666666666665556666666666666655333222 23556666666666666
Q ss_pred CCCC-cccccCCccccccccccccccc--ccchhhhCCCCccEeccccccccccCCC---CCCCccEeeccCc
Q 012450 159 AITE-LPESLGLLSSLEELYLERNNFE--RIPESIIRLSKLSSLLVSYCERLQSLPK---LPCNLYWLDAQHC 225 (463)
Q Consensus 159 ~l~~-~p~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~c~~l~~l~~---l~~~L~~L~i~~c 225 (463)
.+.+ .|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|......|. -.++|+.|++++|
T Consensus 432 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 6655 4455566666666666666664 4566666666666666666643322232 1245666666665
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=2.3e-19 Score=186.23 Aligned_cols=195 Identities=14% Similarity=0.059 Sum_probs=164.8
Q ss_pred CCCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCcc
Q 012450 1 MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLL 80 (463)
Q Consensus 1 l~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 80 (463)
+..+++|++|+|++|. ++.. ++ +..+++|++|+|++| .++.+|. .++|++|++++|.++.++.. .+++|+
T Consensus 54 ~~~l~~L~~L~Ls~N~-l~~~--~~-l~~l~~L~~L~Ls~N-~l~~l~~---~~~L~~L~L~~N~l~~~~~~--~l~~L~ 123 (487)
T 3oja_A 54 LAPFTKLELLNLSSNV-LYET--LD-LESLSTLRTLDLNNN-YVQELLV---GPSIETLHAANNNISRVSCS--RGQGKK 123 (487)
T ss_dssp GTTCTTCCEEECTTSC-CEEE--EE-CTTCTTCCEEECCSS-EEEEEEE---CTTCCEEECCSSCCCCEEEC--CCSSCE
T ss_pred HhCCCCCCEEEeeCCC-CCCC--cc-cccCCCCCEEEecCC-cCCCCCC---CCCcCEEECcCCcCCCCCcc--ccCCCC
Confidence 3578999999999954 5555 23 889999999999996 4555543 48999999999999987753 578999
Q ss_pred EEeeecCCCCCccchhcCCCCCCcEEEEECCCCccC-CccCC-CCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCC
Q 012450 81 ELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIE-CLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDC 158 (463)
Q Consensus 81 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~i~-~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~ 158 (463)
.|++++|......|..++.+++|+.|++++|.++.+ |..+. .+++|+.|++++|. ++.++. ...+++|+.|+|++|
T Consensus 124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSN 201 (487)
T ss_dssp EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSS
T ss_pred EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc-cccCCCCCEEECCCC
Confidence 999999876666677788999999999999999864 55554 78999999999987 555554 456899999999999
Q ss_pred CCCCcccccCCcccccccccccccccccchhhhCCCCccEecccccccc
Q 012450 159 AITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERL 207 (463)
Q Consensus 159 ~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l 207 (463)
.++++|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+..
T Consensus 202 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 202 KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 9999888899999999999999999999999999999999999998654
No 74
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=2.3e-18 Score=180.79 Aligned_cols=195 Identities=21% Similarity=0.252 Sum_probs=125.9
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCC-CC-CCCCCCccEEEeeccCCCccC-ccccCCCCccE
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSL-PE-ISSAGNIEKILLDGTAIEELP-SSIGCLSRLLE 81 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-p~-l~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~ 81 (463)
+.....+.++ +.++++ |..+. ++|++|++++|. ++.+ |. +..+++|++|++++|.++.++ ..+..+++|++
T Consensus 5 ~~~~~c~~~~-~~l~~i--p~~~~--~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 5 DASGVCDGRS-RSFTSI--PSGLT--AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp CTTSEEECTT-SCCSSC--CSCCC--TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCceEECCC-Cccccc--cccCC--CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCE
Confidence 3444455554 456666 44442 677777777754 4443 33 677777777777777777554 44677777777
Q ss_pred EeeecCCCCCccchhcCCCCCCcEEEEECCCCcc--CCccCCCCCCccEEecCCCCCCCcCc-ccCCCCCCccEEEeeCC
Q 012450 82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE--LPSPIECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDC 158 (463)
Q Consensus 82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~L~~~ 158 (463)
|++++|......|..++++++|++|++++|.++. +|..++.+++|++|++++|..++.++ ..+.++++|+.|++++|
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 7777765443334447777777777777777763 35566777777777777776555554 34666777777777777
Q ss_pred CCCC-cccccCCcccccccccccccccccchhh-hCCCCccEecccccc
Q 012450 159 AITE-LPESLGLLSSLEELYLERNNFERIPESI-IRLSKLSSLLVSYCE 205 (463)
Q Consensus 159 ~l~~-~p~~l~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~c~ 205 (463)
.+.+ .|..++.+++|++|++++|.+..+|..+ ..+++|+.|++++|.
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred cccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence 7766 5666777777777777777766666543 456777777777764
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=4.4e-18 Score=164.57 Aligned_cols=176 Identities=21% Similarity=0.262 Sum_probs=153.7
Q ss_pred CCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEe
Q 012450 4 HGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 83 (463)
.++|+.|+|++|. ++.+. +..+..+++|+.|+|++| .++.++..+.+++|++|++++|.++.+|..+..+++|++|+
T Consensus 30 ~~~l~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 30 PKDTTILHLSENL-LYTFS-LATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106 (290)
T ss_dssp CTTCCEEECTTSC-CSEEE-GGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCc-CCccC-HHHhhcCCCCCEEECCCC-ccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEE
Confidence 3689999999954 55553 577999999999999995 57777777899999999999999999999999999999999
Q ss_pred eecCCCCCccc-hhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCC
Q 012450 84 LGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAI 160 (463)
Q Consensus 84 l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l 160 (463)
+++|. ++.+| ..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|. ++.+|. .+..+++|+.|+|++|.+
T Consensus 107 l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 107 VSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp CCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcC
Confidence 99975 45554 6789999999999999999988765 5789999999999987 566665 457899999999999999
Q ss_pred CCcccccCCccccccccccccccc
Q 012450 161 TELPESLGLLSSLEELYLERNNFE 184 (463)
Q Consensus 161 ~~~p~~l~~l~~L~~L~Ls~n~l~ 184 (463)
+.+|..+...++|+.|+|++|.+.
T Consensus 185 ~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 185 YTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccChhhcccccCCeEEeCCCCcc
Confidence 999999999999999999999874
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=182.21 Aligned_cols=132 Identities=24% Similarity=0.347 Sum_probs=104.9
Q ss_pred CCCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCC-C-CCCCCCccEEEeeccCCCccCc-cccCCC
Q 012450 1 MQHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-E-ISSAGNIEKILLDGTAIEELPS-SIGCLS 77 (463)
Q Consensus 1 l~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp-~-l~~l~~L~~L~L~~~~i~~lp~-~i~~l~ 77 (463)
+.++++|++|+|++| .++.++ +..+.++++|++|++++|. ++.++ . ++.+++|++|++++|.++.++. .++.++
T Consensus 48 ~~~l~~L~~L~Ls~n-~i~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 48 FFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp TTTCSSCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred hhCCCCceEEECCCC-cCCccC-cccccCchhCCEEeCcCCc-CCccCHhhhcCccccccccccccccccCCCccccccc
Confidence 367899999999996 466653 5678899999999999964 55555 3 8899999999999999998876 588999
Q ss_pred CccEEeeecCCCCC-ccchhcCCCCCCcEEEEECCCCccCC-ccCCCCCCc----cEEecCCCC
Q 012450 78 RLLELNLGDCKNLK-TLPSSLCKLKSLEEICLTGSAIEELP-SPIECLSAL----CVLDLGDCK 135 (463)
Q Consensus 78 ~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L----~~L~l~~c~ 135 (463)
+|++|++++|.... .+|..++++++|++|++++|.++.++ ..++.+++| +.|++++|.
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence 99999999976544 47888999999999999999888664 345555555 566666654
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.4e-18 Score=168.18 Aligned_cols=172 Identities=27% Similarity=0.375 Sum_probs=149.1
Q ss_pred ccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCc
Q 012450 25 SLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLE 104 (463)
Q Consensus 25 ~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~ 104 (463)
.....+++|+.|++++| .+..++.+..+++|++|++++|.++.++. +..+++|++|++++|. +..+|. +..+++|+
T Consensus 40 ~~~~~l~~L~~L~l~~~-~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLK 115 (291)
T ss_dssp ECHHHHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCC
T ss_pred cchhhcCcccEEEccCC-CcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCC
Confidence 34567899999999986 67788888889999999999999998877 8899999999999974 566654 88999999
Q ss_pred EEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCccccccccccccccc
Q 012450 105 EICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE 184 (463)
Q Consensus 105 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~ 184 (463)
.|++++|.++.++ .+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.+.+++. +..+++|+.|++++|.++
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcch-hhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence 9999999999874 67889999999999886 55554 48889999999999999999776 889999999999999999
Q ss_pred ccchhhhCCCCccEecccccc
Q 012450 185 RIPESIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 185 ~lp~~l~~l~~L~~L~L~~c~ 205 (463)
.++. +..+++|+.|++++|+
T Consensus 192 ~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 192 DLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp BCGG-GTTCTTCSEEEEEEEE
T ss_pred CChh-hccCCCCCEEECcCCc
Confidence 8874 8899999999999985
No 78
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=1e-17 Score=178.25 Aligned_cols=81 Identities=30% Similarity=0.329 Sum_probs=63.8
Q ss_pred CCCCCccEEEeeCCCCCC--cccccCCccccccccccccccccc-chhhhCCCCccEeccccccccccCCCC----CCCc
Q 012450 145 DGLYSLTYLYLTDCAITE--LPESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCERLQSLPKL----PCNL 217 (463)
Q Consensus 145 ~~l~~L~~L~L~~~~l~~--~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~l----~~~L 217 (463)
..+++|+.|++++|.+.. .|..+..+++|+.|+|++|+++.+ |..+.++++|+.|+|++| .++.++.. .++|
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSL 544 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCC
Confidence 345678999999987554 677788999999999999999876 567888999999999998 45555432 3678
Q ss_pred cEeeccCcc
Q 012450 218 YWLDAQHCT 226 (463)
Q Consensus 218 ~~L~i~~c~ 226 (463)
+.|+++++.
T Consensus 545 ~~L~Ls~N~ 553 (635)
T 4g8a_A 545 QVLDYSLNH 553 (635)
T ss_dssp CEEECTTSC
T ss_pred CEEECCCCc
Confidence 999998863
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=2.2e-17 Score=175.58 Aligned_cols=196 Identities=25% Similarity=0.278 Sum_probs=144.3
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 82 (463)
.+++|++|+|++| .++.+ +. .+++|++|++++| .++.+|. .+++|+.|++++|.++.+|.. +++|++|
T Consensus 79 ~l~~L~~L~Ls~N-~l~~l--p~---~l~~L~~L~Ls~N-~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L 146 (622)
T 3g06_A 79 LPPELRTLEVSGN-QLTSL--PV---LPPGLLELSIFSN-PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQEL 146 (622)
T ss_dssp CCTTCCEEEECSC-CCSCC--CC---CCTTCCEEEECSC-CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEE
T ss_pred cCCCCCEEEcCCC-cCCcC--CC---CCCCCCEEECcCC-cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEE
Confidence 3678999999985 57777 44 6789999999985 6677776 567888888888888888864 4778888
Q ss_pred eeecCCCCCccchhcCC-----------------CCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCC
Q 012450 83 NLGDCKNLKTLPSSLCK-----------------LKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFD 145 (463)
Q Consensus 83 ~l~~c~~l~~lp~~l~~-----------------l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~ 145 (463)
++++|. +..+|..+.+ +++|+.|++++|.++.+|.. +++|+.|++++|. ++.+|.
T Consensus 147 ~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~-l~~l~~--- 218 (622)
T 3g06_A 147 SVSDNQ-LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNR-LTSLPA--- 218 (622)
T ss_dssp ECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCC---
T ss_pred ECcCCc-CCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCc-ccccCC---
Confidence 888763 4444432222 27788888888888887754 4788899998876 566664
Q ss_pred CCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCC---CCCccEeec
Q 012450 146 GLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDA 222 (463)
Q Consensus 146 ~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i 222 (463)
.+++|+.|++++|.++.+| ..+++|+.|++++|+++.+|. .+++|+.|++++| .++.+|.. .++|+.|++
T Consensus 219 ~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 219 LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNL 291 (622)
T ss_dssp CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEEC
T ss_pred CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEe
Confidence 3478899999999888887 466889999999999888886 6788999999988 45555531 134444554
Q ss_pred cCc
Q 012450 223 QHC 225 (463)
Q Consensus 223 ~~c 225 (463)
+++
T Consensus 292 ~~N 294 (622)
T 3g06_A 292 EGN 294 (622)
T ss_dssp CSC
T ss_pred cCC
Confidence 443
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=1.6e-17 Score=156.89 Aligned_cols=168 Identities=27% Similarity=0.372 Sum_probs=81.5
Q ss_pred ccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCc-cccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEEC
Q 012450 33 LVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG 110 (463)
Q Consensus 33 L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 110 (463)
.+.+++++ ..++.+|. +. ++|+.|++++|.++.++. .+..+++|++|++++|......+..+..+++|+.|++++
T Consensus 16 ~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTT-CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCC-CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34444444 23444443 22 345555555555544332 244455555555555433222233344555555555555
Q ss_pred CCCccCCc-cCCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCCCCccc-ccCCcccccccccccccccccc
Q 012450 111 SAIEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIP 187 (463)
Q Consensus 111 ~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp 187 (463)
|.++.++. .+..+++|++|++++|. ++.++. .+..+++|+.|+|++|.+..+|. .+..+++|+.|+|++|+++.++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 55554442 23455555555555543 233332 23455555555555555555443 3455555666666665555444
Q ss_pred h-hhhCCCCccEeccccc
Q 012450 188 E-SIIRLSKLSSLLVSYC 204 (463)
Q Consensus 188 ~-~l~~l~~L~~L~L~~c 204 (463)
. .+..+++|+.|++++|
T Consensus 172 ~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp TTTTTTCTTCCEEECCSC
T ss_pred HHHHhCCCCCCEEEeeCC
Confidence 3 4455555555555555
No 81
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=1.1e-17 Score=175.95 Aligned_cols=181 Identities=19% Similarity=0.281 Sum_probs=154.1
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEee
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l 84 (463)
.+|+.|+|++| .++.+ |..+ +++|+.|+|++| .++.+| ..+++|++|++++|.|+.+|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n-~L~~l--p~~l--~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSL--PDNL--PPQITVLEITQN-ALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSS-CCSCC--CSCC--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCC-CCCcc--CHhH--cCCCCEEECcCC-CCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 38999999995 57777 5555 389999999996 677888 678999999999999999998 655 9999999
Q ss_pred ecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc
Q 012450 85 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP 164 (463)
Q Consensus 85 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p 164 (463)
++|. ++.+|. .+++|+.|++++|.++.+|. .+++|++|++++|. ++.+|. +. ++|+.|+|++|.++.+|
T Consensus 128 s~N~-l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 128 DNNQ-LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp CSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSCCSSCC
T ss_pred CCCc-CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCCCCchh
Confidence 9974 566887 68999999999999999987 67899999999987 666887 55 89999999999999998
Q ss_pred cccCCcccc-------cccccccccccccchhhhCCCCccEeccccccccccC
Q 012450 165 ESLGLLSSL-------EELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSL 210 (463)
Q Consensus 165 ~~l~~l~~L-------~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l 210 (463)
. +.. +| +.|+|++|+++.+|..+..+++|+.|+|++|+.-..+
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp C-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 8 554 77 9999999999999999999999999999999754433
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=3.8e-17 Score=154.33 Aligned_cols=174 Identities=22% Similarity=0.314 Sum_probs=146.4
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCCccE
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLE 81 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~ 81 (463)
.+.+++++++ ..++.+ |..+. ++|+.|+|++|. +..++. +..+++|++|++++|.++.++.. +..+++|++
T Consensus 14 ~~~~~l~~~~-~~l~~~--p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 14 EGKKEVDCQG-KSLDSV--PSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGGTEEECTT-CCCSSC--CSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCeEEecCC-CCcccc--CCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence 4568899998 678888 56554 699999999965 455543 89999999999999999977654 789999999
Q ss_pred EeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCC
Q 012450 82 LNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCA 159 (463)
Q Consensus 82 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~ 159 (463)
|++++|......+..+..+++|++|++++|.++.+|.. +..+++|++|++++|. ++.++. .+..+++|+.|+|++|.
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCc
Confidence 99999765444446678999999999999999998875 5889999999999986 556655 58899999999999999
Q ss_pred CCCccc-ccCCcccccccccccccccc
Q 012450 160 ITELPE-SLGLLSSLEELYLERNNFER 185 (463)
Q Consensus 160 l~~~p~-~l~~l~~L~~L~Ls~n~l~~ 185 (463)
+..++. .+..+++|+.|++++|.+..
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 999665 67899999999999998853
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=166.88 Aligned_cols=177 Identities=21% Similarity=0.221 Sum_probs=112.4
Q ss_pred CCCccEEEeeccCCC-ccCccc--cCCCCccEEeeecCCCCCccc----hhcCCCCCCcEEEEECCCCccCC-ccCCCCC
Q 012450 53 AGNIEKILLDGTAIE-ELPSSI--GCLSRLLELNLGDCKNLKTLP----SSLCKLKSLEEICLTGSAIEELP-SPIECLS 124 (463)
Q Consensus 53 l~~L~~L~L~~~~i~-~lp~~i--~~l~~L~~L~l~~c~~l~~lp----~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~ 124 (463)
+++|++|++++|.++ ..|..+ ..+++|++|++++|......+ ..+..+++|++|++++|.++.++ ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 455777777777776 344445 677777777777765443332 23456777777777777777654 4566777
Q ss_pred CccEEecCCCCCCCc--Cc--ccCCCCCCccEEEeeCCCCCCcccc----cCCccccccccccccccccc-chhhhCC--
Q 012450 125 ALCVLDLGDCKSLKS--LK--LPFDGLYSLTYLYLTDCAITELPES----LGLLSSLEELYLERNNFERI-PESIIRL-- 193 (463)
Q Consensus 125 ~L~~L~l~~c~~l~~--l~--~~l~~l~~L~~L~L~~~~l~~~p~~----l~~l~~L~~L~Ls~n~l~~l-p~~l~~l-- 193 (463)
+|++|++++|..... ++ ..+..+++|++|++++|.++.++.. ++.+++|++|+|++|+++.+ |..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 777777777764321 21 1235667777777777777665432 35667777777777777654 5555555
Q ss_pred -CCccEeccccccccccCCC-CCCCccEeeccCccccccc
Q 012450 194 -SKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTTLESL 231 (463)
Q Consensus 194 -~~L~~L~L~~c~~l~~l~~-l~~~L~~L~i~~c~~L~~l 231 (463)
++|+.|++++|. ++.+|. ++++|+.|+++++ .++.+
T Consensus 250 ~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N-~l~~~ 287 (310)
T 4glp_A 250 SSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSN-RLNRA 287 (310)
T ss_dssp CTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSC-CCCSC
T ss_pred cCcCCEEECCCCC-CCchhhhhcCCCCEEECCCC-cCCCC
Confidence 577777777764 445554 4567777777665 34443
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=2.9e-17 Score=163.08 Aligned_cols=219 Identities=25% Similarity=0.332 Sum_probs=179.1
Q ss_pred ceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCC-ccCcc-ccCCCCccEEe
Q 012450 8 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIE-ELPSS-IGCLSRLLELN 83 (463)
Q Consensus 8 ~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~-~lp~~-i~~l~~L~~L~ 83 (463)
+.++.++ +.++++ |..+ .+++++|+|++| .++.+|. +..+++|++|+|++|.+. .+|.. +.++++|.++.
T Consensus 12 ~~v~C~~-~~Lt~i--P~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQE-SKVTEI--PSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEES-TTCCSC--CTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecC-CCCCcc--CcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 4566665 678888 6655 468999999995 7888886 899999999999999875 56654 67899988776
Q ss_pred eecCCCCCcc-chhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCccc-CCCC-CCccEEEeeCCC
Q 012450 84 LGDCKNLKTL-PSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLP-FDGL-YSLTYLYLTDCA 159 (463)
Q Consensus 84 l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~~-l~~l-~~L~~L~L~~~~ 159 (463)
+.+++.+..+ |..+..+++|+.|++++|.++.+|.. +....++..|++.++..+..++.. +..+ ..++.|++++|+
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 6666677777 46688999999999999999988753 456677889999888778877653 4444 468999999999
Q ss_pred CCCcccccCCccccccccccc-ccccccch-hhhCCCCccEeccccccccccCCC-CCCCccEeeccCccccccccc
Q 012450 160 ITELPESLGLLSSLEELYLER-NNFERIPE-SIIRLSKLSSLLVSYCERLQSLPK-LPCNLYWLDAQHCTTLESLSG 233 (463)
Q Consensus 160 l~~~p~~l~~l~~L~~L~Ls~-n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~l~~-l~~~L~~L~i~~c~~L~~l~~ 233 (463)
++++|..+...++|++|++++ |.++.+|. .+..+++|+.|++++| .++.+|. ...+|+.|.+.++..|+.+|.
T Consensus 166 i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 166 IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCC
T ss_pred ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCC
Confidence 999988888889999999985 67889985 5688999999999998 5888875 577899999999999998884
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.5e-17 Score=160.93 Aligned_cols=173 Identities=26% Similarity=0.369 Sum_probs=151.4
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 82 (463)
.+++|++|++++| .++.+ +.+..+++|+.|++++| .++.++.+..+++|++|++++|.++.++. +..+++|++|
T Consensus 44 ~l~~L~~L~l~~~-~i~~~---~~~~~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSV---QGIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hcCcccEEEccCC-CcccC---hhHhcCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 3578999999995 56776 35889999999999996 56777779999999999999999998776 8999999999
Q ss_pred eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC
Q 012450 83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE 162 (463)
Q Consensus 83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~ 162 (463)
++++|. +..++ .+..+++|+.|++++|.++.+ ..+..+++|++|++++|. ++.++. +..+++|+.|++++|.+++
T Consensus 118 ~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 118 SLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp ECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred ECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCcCCC
Confidence 999975 55564 588999999999999999988 578899999999999986 566665 8899999999999999999
Q ss_pred cccccCCcccccccccccccccccc
Q 012450 163 LPESLGLLSSLEELYLERNNFERIP 187 (463)
Q Consensus 163 ~p~~l~~l~~L~~L~Ls~n~l~~lp 187 (463)
++. +..+++|+.|++++|+++..|
T Consensus 193 l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 193 LRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred Chh-hccCCCCCEEECcCCcccCCc
Confidence 875 899999999999999987655
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=1.5e-19 Score=177.84 Aligned_cols=213 Identities=19% Similarity=0.225 Sum_probs=131.4
Q ss_pred cceeecccccCcCCCCCcccccCC--cCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCc--cCccccCCCCccEE
Q 012450 7 LNQIIMAACNIFTKTPNPSLIQHL--NKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEE--LPSSIGCLSRLLEL 82 (463)
Q Consensus 7 L~~L~L~~c~~l~~~~~~~~~~~l--~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L 82 (463)
++.|+++++. +. +..+..+ ++++.|+++++......+.+..+++|++|++++|.++. ++..+..+++|++|
T Consensus 49 ~~~l~l~~~~-~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKN-LH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCB-CC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeecccccc-CC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 5667776632 22 2334444 66777777765443344445667777777777776652 56666677777777
Q ss_pred eeecCCCCCccchhcCCCCCCcEEEEECC-CCc--cCCccCCCCCCccEEecCCCCCCCc--CcccCCCCC-CccEEEee
Q 012450 83 NLGDCKNLKTLPSSLCKLKSLEEICLTGS-AIE--ELPSPIECLSALCVLDLGDCKSLKS--LKLPFDGLY-SLTYLYLT 156 (463)
Q Consensus 83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~-~i~--~lp~~i~~l~~L~~L~l~~c~~l~~--l~~~l~~l~-~L~~L~L~ 156 (463)
++++|......+..+..+++|++|++++| .++ .++..+..+++|++|++++|..++. ++..+..++ +|+.|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 77776544455666667777777777777 455 2555566677777777777744443 344455666 77777777
Q ss_pred CC--CCCC--cccccCCccccccccccccc-cc-ccchhhhCCCCccEecccccccccc-----CCCCCCCccEeeccCc
Q 012450 157 DC--AITE--LPESLGLLSSLEELYLERNN-FE-RIPESIIRLSKLSSLLVSYCERLQS-----LPKLPCNLYWLDAQHC 225 (463)
Q Consensus 157 ~~--~l~~--~p~~l~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~L~~c~~l~~-----l~~l~~~L~~L~i~~c 225 (463)
+| .+++ +|..+..+++|++|++++|. ++ ..+..+.++++|+.|++++|..+.. +.. .++|+.|++.+|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc-CCCCCEEeccCc
Confidence 77 3432 55566667777777777776 43 4455666777777777777753321 111 356777777766
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=4.8e-17 Score=161.42 Aligned_cols=213 Identities=15% Similarity=0.138 Sum_probs=168.2
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccE-EEeeccCCCccCc-cccCCCCcc
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEK-ILLDGTAIEELPS-SIGCLSRLL 80 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~-L~L~~~~i~~lp~-~i~~l~~L~ 80 (463)
+++++|+|++ +.++.++ +..+.++++|++|+|++|..++.+|. +..+++|++ +.+.+|.++.++. .+..+++|+
T Consensus 30 ~~l~~L~Ls~-N~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVL-TKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEES-CCCSEEC-TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccC-CcCCCcC-HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 5799999999 6788884 35689999999999999877777776 788888876 5566689998854 578999999
Q ss_pred EEeeecCCCCCccc-hhcCCCCCCcEEEEEC-CCCccCCcc-CCCC-CCccEEecCCCCCCCcCcccCCCCCCccEEEee
Q 012450 81 ELNLGDCKNLKTLP-SSLCKLKSLEEICLTG-SAIEELPSP-IECL-SALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLT 156 (463)
Q Consensus 81 ~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~-~~i~~lp~~-i~~l-~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~ 156 (463)
+|++++|. +..+| ..+....++..|++.+ +.+..++.. +..+ ..++.|++++|. ++.++.......+|+.|++.
T Consensus 108 ~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 108 YLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLS 185 (350)
T ss_dssp EEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECT
T ss_pred cccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhHHhhc
Confidence 99999975 45554 3455667788899976 578877653 4444 468999999876 67787777777899999998
Q ss_pred C-CCCCCccc-ccCCcccccccccccccccccchhhhCCCCccEeccccccccccCCCCC--CCccEeecc
Q 012450 157 D-CAITELPE-SLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCERLQSLPKLP--CNLYWLDAQ 223 (463)
Q Consensus 157 ~-~~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~l~--~~L~~L~i~ 223 (463)
+ +.+..+|. .+..+++|+.|+|++|+++.+|.. .+.+|+.|.+.++..++.+|.+. ++|+.+++.
T Consensus 186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp TCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred cCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 5 56777886 468999999999999999999853 46788888888888888888643 566666664
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=5.9e-19 Score=173.67 Aligned_cols=194 Identities=18% Similarity=0.245 Sum_probs=120.8
Q ss_pred CccEEeeecCCCCCCCCC-CCCC--CCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCc-cchhcCCCCCCcEEE
Q 012450 32 KLVILNLSGCSKLKSLPE-ISSA--GNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKT-LPSSLCKLKSLEEIC 107 (463)
Q Consensus 32 ~L~~L~L~~c~~l~~lp~-l~~l--~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~ 107 (463)
.++.++++++. +. +. +..+ ++++.|+++++.+...+..+..+++|++|++++|..... ++..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~-~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKN-LH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCB-CC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeecccccc-CC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 36667776642 22 22 3344 667777777776665555566677777777777653322 566666777777777
Q ss_pred EECCCCc-cCCccCCCCCCccEEecCCCCCCCc--CcccCCCCCCccEEEeeCC-CCCC--cccccCCcc-ccccccccc
Q 012450 108 LTGSAIE-ELPSPIECLSALCVLDLGDCKSLKS--LKLPFDGLYSLTYLYLTDC-AITE--LPESLGLLS-SLEELYLER 180 (463)
Q Consensus 108 l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~l~~--l~~~l~~l~~L~~L~L~~~-~l~~--~p~~l~~l~-~L~~L~Ls~ 180 (463)
+++|.++ ..+..++.+++|++|++++|..++. ++..+.++++|+.|++++| .+++ ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 7777665 3455566677777777777754542 4444566677777777777 6664 555666677 777777777
Q ss_pred cc--c--cccchhhhCCCCccEecccccccccc--CCC--CCCCccEeeccCcccc
Q 012450 181 NN--F--ERIPESIIRLSKLSSLLVSYCERLQS--LPK--LPCNLYWLDAQHCTTL 228 (463)
Q Consensus 181 n~--l--~~lp~~l~~l~~L~~L~L~~c~~l~~--l~~--l~~~L~~L~i~~c~~L 228 (463)
|. + ..+|..+..+++|+.|++++|..++. ++. -.++|+.|++++|..+
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 73 3 34566666677777777777764331 111 1256777777777533
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=8.1e-18 Score=178.59 Aligned_cols=170 Identities=27% Similarity=0.384 Sum_probs=112.6
Q ss_pred ccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEE
Q 012450 27 IQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEI 106 (463)
Q Consensus 27 ~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 106 (463)
+..+++|+.|++++| .+..++.+..+++|+.|+|++|.++.++. +..+++|+.|+|++|. +..+| .+..+++|+.|
T Consensus 39 ~~~L~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTC-CCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCC-CCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEE
Confidence 445666777777664 45666666667777777777777766655 6667777777777653 44444 46667777777
Q ss_pred EEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCccccccccccccccccc
Q 012450 107 CLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERI 186 (463)
Q Consensus 107 ~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~l 186 (463)
+|++|.+..++ .+..+++|+.|+|++|. +..++ .+..+++|+.|+|++|.+.+++. +..+++|+.|+|++|.++.+
T Consensus 115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 115 SLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp ECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCG-GGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred EecCCCCCCCc-cccCCCccCEEECCCCc-cCCch-hhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC
Confidence 77777776653 46667777777777665 44443 36667777777777777766544 66777777777777777666
Q ss_pred chhhhCCCCccEecccccc
Q 012450 187 PESIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 187 p~~l~~l~~L~~L~L~~c~ 205 (463)
| .+..+++|+.|+|++|+
T Consensus 191 ~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 191 R-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp G-GGTTCTTCSEEECCSEE
T ss_pred h-HHccCCCCCEEEccCCc
Confidence 5 46667777777777764
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=1.7e-19 Score=181.47 Aligned_cols=222 Identities=18% Similarity=0.197 Sum_probs=152.7
Q ss_pred CCCCcceeecccccCcCCCC--CcccccCCcCccEEeeecCC--CCC-CCCC--------CCCCCCccEEEeeccCCCc-
Q 012450 3 HHGKLNQIIMAACNIFTKTP--NPSLIQHLNKLVILNLSGCS--KLK-SLPE--------ISSAGNIEKILLDGTAIEE- 68 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~--~~~~~~~l~~L~~L~L~~c~--~l~-~lp~--------l~~l~~L~~L~L~~~~i~~- 68 (463)
.+++|++|+|++|..-...+ ....+..+++|++|+|++|. .+. .+|. +..+++|++|+|++|.++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 46788888888864333210 02346678888899888862 221 2232 2678888889988888875
Q ss_pred ----cCccccCCCCccEEeeecCCCCC----ccchhcCCC---------CCCcEEEEECCCCc--cCC---ccCCCCCCc
Q 012450 69 ----LPSSIGCLSRLLELNLGDCKNLK----TLPSSLCKL---------KSLEEICLTGSAIE--ELP---SPIECLSAL 126 (463)
Q Consensus 69 ----lp~~i~~l~~L~~L~l~~c~~l~----~lp~~l~~l---------~~L~~L~l~~~~i~--~lp---~~i~~l~~L 126 (463)
++..+..+++|++|++++|.... .++..+..+ ++|++|++++|.++ .++ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 66677888888899888875422 223333344 88888888888886 344 355677888
Q ss_pred cEEecCCCCCCC------cCcccCCCCCCccEEEeeCCCCC-----CcccccCCcccccccccccccccc-----cchhh
Q 012450 127 CVLDLGDCKSLK------SLKLPFDGLYSLTYLYLTDCAIT-----ELPESLGLLSSLEELYLERNNFER-----IPESI 190 (463)
Q Consensus 127 ~~L~l~~c~~l~------~l~~~l~~l~~L~~L~L~~~~l~-----~~p~~l~~l~~L~~L~Ls~n~l~~-----lp~~l 190 (463)
++|++++|. ++ ..+..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.++. ++..+
T Consensus 190 ~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 190 HTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp CEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred CEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 888888886 43 23335677888888888888884 377778888888888888888763 46666
Q ss_pred hC--CCCccEeccccccccc----cCCCC----CCCccEeeccCc
Q 012450 191 IR--LSKLSSLLVSYCERLQ----SLPKL----PCNLYWLDAQHC 225 (463)
Q Consensus 191 ~~--l~~L~~L~L~~c~~l~----~l~~l----~~~L~~L~i~~c 225 (463)
.. +++|+.|+|++|..-. .+|.. .++|+.|++++|
T Consensus 269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 44 8888888888885332 24431 356777777665
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=3.6e-17 Score=148.72 Aligned_cols=150 Identities=17% Similarity=0.262 Sum_probs=120.3
Q ss_pred CCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCcc-CCccCCCCCCccEE
Q 012450 51 SSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE-LPSPIECLSALCVL 129 (463)
Q Consensus 51 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L 129 (463)
+.+++|+.|++++|.++.+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.++. .+..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 55678888888888888877 5788888888888887 445444 67788888888888888875 57778888888888
Q ss_pred ecCCCCCCCcCcccCCCCCCccEEEeeCCC-CCCcccccCCcccccccccccccccccchhhhCCCCccEecccccc
Q 012450 130 DLGDCKSLKSLKLPFDGLYSLTYLYLTDCA-ITELPESLGLLSSLEELYLERNNFERIPESIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 130 ~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~-l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~ 205 (463)
++++|......+..+..+++|+.|++++|. +.++| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 888887554456667888888999998887 77776 5788888999999998888877 67888888888888874
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=2.5e-17 Score=149.79 Aligned_cols=153 Identities=20% Similarity=0.264 Sum_probs=130.7
Q ss_pred cCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEE
Q 012450 28 QHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEIC 107 (463)
Q Consensus 28 ~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 107 (463)
..+++|+.|++++| .+..+|.+..+++|++|++++|.++.++ .+..+++|++|++++|......+..+..+++|+.|+
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCC-CccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 56789999999985 6778888888999999999999887665 588899999999999765555677889999999999
Q ss_pred EECCCCcc-CCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCccccccccccccccc
Q 012450 108 LTGSAIEE-LPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE 184 (463)
Q Consensus 108 l~~~~i~~-lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~ 184 (463)
+++|.++. .|..+..+++|++|++++|..++.++ .+..+++|+.|++++|.+.+++ .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 99999985 56778899999999999998677787 4889999999999999999987 7889999999999999875
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=1.1e-18 Score=175.56 Aligned_cols=204 Identities=18% Similarity=0.200 Sum_probs=161.7
Q ss_pred CCCCCCcceeecccc--cCcC-CCCCcccc-------cCCcCccEEeeecCCCCC----CCCC-CCCCCCccEEEeeccC
Q 012450 1 MQHHGKLNQIIMAAC--NIFT-KTPNPSLI-------QHLNKLVILNLSGCSKLK----SLPE-ISSAGNIEKILLDGTA 65 (463)
Q Consensus 1 l~~~~~L~~L~L~~c--~~l~-~~~~~~~~-------~~l~~L~~L~L~~c~~l~----~lp~-l~~l~~L~~L~L~~~~ 65 (463)
+.++++|++|+|++| +.++ .+ |..+ ..+++|++|+|++|.... .+|. +..+++|++|+|++|.
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~--~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEI--PEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGS--HHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHhCCCccEEeCcccccCccccch--hHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 457899999999996 2332 22 3333 689999999999975433 1454 7789999999999999
Q ss_pred CCc-----cCccccCC---------CCccEEeeecCCCC-Cccc---hhcCCCCCCcEEEEECCCCc------cCCccCC
Q 012450 66 IEE-----LPSSIGCL---------SRLLELNLGDCKNL-KTLP---SSLCKLKSLEEICLTGSAIE------ELPSPIE 121 (463)
Q Consensus 66 i~~-----lp~~i~~l---------~~L~~L~l~~c~~l-~~lp---~~l~~l~~L~~L~l~~~~i~------~lp~~i~ 121 (463)
++. ++..+..+ ++|++|++++|... ..++ ..+..+++|++|++++|.++ -++..+.
T Consensus 134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~ 213 (386)
T 2ca6_A 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence 872 33344445 89999999998654 3444 46778999999999999998 2444788
Q ss_pred CCCCccEEecCCCCCC----CcCcccCCCCCCccEEEeeCCCCCC-----ccccc--CCcccccccccccccccc-----
Q 012450 122 CLSALCVLDLGDCKSL----KSLKLPFDGLYSLTYLYLTDCAITE-----LPESL--GLLSSLEELYLERNNFER----- 185 (463)
Q Consensus 122 ~l~~L~~L~l~~c~~l----~~l~~~l~~l~~L~~L~L~~~~l~~-----~p~~l--~~l~~L~~L~Ls~n~l~~----- 185 (463)
.+++|++|++++|..- ..++..+..+++|+.|+|++|.+.+ ++..+ +.+++|+.|+|++|.++.
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~ 293 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence 9999999999998842 4567778889999999999999986 46666 449999999999999986
Q ss_pred cchhh-hCCCCccEeccccccc
Q 012450 186 IPESI-IRLSKLSSLLVSYCER 206 (463)
Q Consensus 186 lp~~l-~~l~~L~~L~L~~c~~ 206 (463)
+|..+ .++++|+.|++++|+.
T Consensus 294 l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 294 LKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHHhcCCCceEEEccCCcC
Confidence 88887 6689999999999953
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2.3e-17 Score=157.23 Aligned_cols=167 Identities=23% Similarity=0.296 Sum_probs=118.2
Q ss_pred CCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEE
Q 012450 29 HLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICL 108 (463)
Q Consensus 29 ~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 108 (463)
.+.++..+++++ ..++.++.+..+++|++|++++|.++.++ .+..+++|+.|++++| .+..++. +..+++|+.|++
T Consensus 17 ~l~~l~~l~l~~-~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGK-QSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTC-SCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcC-CCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 345556666665 34555555666777777777777777766 4667777777777775 3455555 777777777777
Q ss_pred ECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccch
Q 012450 109 TGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE 188 (463)
Q Consensus 109 ~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~ 188 (463)
++|.++.+|.... ++|++|++++|. ++.++. +..+++|+.|++++|.+++++ .+..+++|+.|++++|+++.+ .
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~ 166 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTDS-LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G 166 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSC-CSBSGG-GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T
T ss_pred CCCccCCcCcccc--CcccEEEccCCc-cCCChh-hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H
Confidence 7777777765433 777888887775 555553 777788888888888887775 577788888888888888776 4
Q ss_pred hhhCCCCccEecccccc
Q 012450 189 SIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 189 ~l~~l~~L~~L~L~~c~ 205 (463)
.+..+++|+.|++++|+
T Consensus 167 ~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TSTTCCCCCEEEEEEEE
T ss_pred HhccCCCCCEEeCCCCc
Confidence 67778888888888774
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=1.9e-16 Score=168.07 Aligned_cols=173 Identities=27% Similarity=0.374 Sum_probs=151.3
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEE
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLEL 82 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 82 (463)
.+++|+.|++++| .+..+ +.+..+++|+.|+|++| .+..++.+..+++|+.|+|++|.++.++ .+..+++|+.|
T Consensus 41 ~L~~L~~L~l~~n-~i~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSV---QGIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCC---TTGGGCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCC-CCCCC---hHHccCCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 4678999999985 56776 36889999999999996 5677777999999999999999999887 58999999999
Q ss_pred eeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC
Q 012450 83 NLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE 162 (463)
Q Consensus 83 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~ 162 (463)
+|++|. +..++ .+..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|. +..++. +..+++|+.|+|++|.+.+
T Consensus 115 ~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 115 SLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp ECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred EecCCC-CCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCCCCCC
Confidence 999975 55554 588999999999999999988 678899999999999987 555555 8899999999999999999
Q ss_pred cccccCCcccccccccccccccccc
Q 012450 163 LPESLGLLSSLEELYLERNNFERIP 187 (463)
Q Consensus 163 ~p~~l~~l~~L~~L~Ls~n~l~~lp 187 (463)
++ .+..+++|+.|+|++|++...|
T Consensus 190 l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 190 LR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CG-GGTTCTTCSEEECCSEEEECCC
T ss_pred Ch-HHccCCCCCEEEccCCcCcCCc
Confidence 85 5889999999999999987665
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=4e-17 Score=155.50 Aligned_cols=170 Identities=21% Similarity=0.229 Sum_probs=147.0
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCccccCCCCccEEee
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNL 84 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l 84 (463)
.++..+++++ +.++++ + .+..+++|+.|++++| .++.++.+..+++|++|++++|.++.++. +..+++|++|++
T Consensus 19 ~~l~~l~l~~-~~i~~~--~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGK-QSVTDL--V-SQKELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTC-SCTTSE--E-CHHHHTTCSEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcC-CCcccc--c-chhhcCcCcEEECcCC-CcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 4566677777 556666 3 6788999999999996 78888888999999999999999999888 899999999999
Q ss_pred ecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc
Q 012450 85 GDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP 164 (463)
Q Consensus 85 ~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p 164 (463)
++| .++.+|... . ++|+.|++++|.++.++ .+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.+.++
T Consensus 93 ~~N-~l~~l~~~~-~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRN-RLKNLNGIP-S-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSS-CCSCCTTCC-C-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCC-ccCCcCccc-c-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch-
Confidence 997 466676533 3 99999999999999986 58899999999999987 66676 488999999999999999998
Q ss_pred cccCCcccccccccccccccccc
Q 012450 165 ESLGLLSSLEELYLERNNFERIP 187 (463)
Q Consensus 165 ~~l~~l~~L~~L~Ls~n~l~~lp 187 (463)
..+..+++|+.|++++|.++..|
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECCC
T ss_pred HHhccCCCCCEEeCCCCcccCCc
Confidence 67889999999999999987665
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=1.5e-15 Score=138.97 Aligned_cols=173 Identities=27% Similarity=0.355 Sum_probs=109.1
Q ss_pred ceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCCccEEee
Q 012450 8 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELNL 84 (463)
Q Consensus 8 ~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l 84 (463)
+.++.++ ..++++ |..+ .++|++|++++| .++.++. +..+++|++|++++|.++.++.. +..+++|++|++
T Consensus 10 ~~v~c~~-~~l~~~--p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 10 TTVECYS-QGRTSV--PTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TEEECCS-SCCSSC--CSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEecC-CCccCC--CCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 4455555 445555 3333 457777777775 4455554 56777777777777777766654 466777777777
Q ss_pred ecCCCCCccc-hhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCCC
Q 012450 85 GDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAIT 161 (463)
Q Consensus 85 ~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l~ 161 (463)
++|. +..+| ..+..+++|++|++++|.++.++.. +..+++|++|++++|. ++.++. .+..+++|+.|++++|.+.
T Consensus 84 s~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 84 STNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee
Confidence 7764 33444 3356777777777777777766554 5667777777777765 333333 3566677777777776443
Q ss_pred CcccccCCccccccccccccccc-ccchhhhCCC
Q 012450 162 ELPESLGLLSSLEELYLERNNFE-RIPESIIRLS 194 (463)
Q Consensus 162 ~~p~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~ 194 (463)
+.+++|+.|+++.|+++ .+|..++.++
T Consensus 162 ------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 162 ------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 34556777777777665 5665555443
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=1.1e-15 Score=160.86 Aligned_cols=171 Identities=25% Similarity=0.269 Sum_probs=139.0
Q ss_pred CccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEEC
Q 012450 32 KLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG 110 (463)
Q Consensus 32 ~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 110 (463)
+|+.|++++| .++.+|. + .++|++|++++|.|+.+| ..+++|++|++++| .++.+|. +.+ +|+.|++++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCC-CCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 8999999996 5777887 5 388999999999999999 46899999999997 4566887 655 999999999
Q ss_pred CCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccchhh
Q 012450 111 SAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPESI 190 (463)
Q Consensus 111 ~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l 190 (463)
|.++.+|. .+++|+.|++++|. ++.+|. .+++|+.|+|++|.++.+|. +. ++|+.|+|++|+++.+|. +
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~ 198 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-V 198 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-C
T ss_pred CcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-H
Confidence 99999987 68999999999987 566775 67899999999999999888 55 899999999999999987 5
Q ss_pred hCCCCc-------cEeccccccccccCCCC---CCCccEeeccCcc
Q 012450 191 IRLSKL-------SSLLVSYCERLQSLPKL---PCNLYWLDAQHCT 226 (463)
Q Consensus 191 ~~l~~L-------~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c~ 226 (463)
.. +| +.|++++| .++.+|.. .++|+.|++++++
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp C----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred HH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 44 67 99999998 45566641 2456666666653
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=2e-15 Score=138.15 Aligned_cols=170 Identities=24% Similarity=0.340 Sum_probs=130.5
Q ss_pred cEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCcc-ccCCCCccEEeeecCCCCCccch-hcCCCCCCcEEEEECC
Q 012450 34 VILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELNLGDCKNLKTLPS-SLCKLKSLEEICLTGS 111 (463)
Q Consensus 34 ~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~ 111 (463)
+.++.++ ..++.+|. ...++|++|++++|.++.++.. +..+++|++|++++|. ++.+|. .+..+++|++|++++|
T Consensus 10 ~~v~c~~-~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYS-QGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCS-SCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecC-CCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC
Confidence 4566665 45666765 2356899999999999887765 6788999999999864 455554 4678999999999999
Q ss_pred CCccCCcc-CCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCCCCcccc-cCCcccccccccccccccccch
Q 012450 112 AIEELPSP-IECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFERIPE 188 (463)
Q Consensus 112 ~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l~~~p~~-l~~l~~L~~L~Ls~n~l~~lp~ 188 (463)
.++.++.. +..+++|++|++++|. ++.++. .+..+++|+.|++++|.+++++.. +..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence 99888765 5788999999999886 444444 467888999999999988886654 678889999999998664
Q ss_pred hhhCCCCccEeccccccccccCCCC
Q 012450 189 SIIRLSKLSSLLVSYCERLQSLPKL 213 (463)
Q Consensus 189 ~l~~l~~L~~L~L~~c~~l~~l~~l 213 (463)
..+++|+.|+++.|..-..+|..
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred --cCCCCHHHHHHHHHhCCceeecc
Confidence 34567888888888766666653
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=1.3e-15 Score=141.99 Aligned_cols=144 Identities=29% Similarity=0.394 Sum_probs=74.1
Q ss_pred EEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCCC
Q 012450 58 KILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCKS 136 (463)
Q Consensus 58 ~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~ 136 (463)
.++.+++.++.+|..+. ++|++|++++|......|..+..+++|+.|++++|.++.+|.. +..+++|++|++++|.
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~- 99 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ- 99 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-
Confidence 34444444444444332 4455555555433333344445555555555555555554432 3455555555555543
Q ss_pred CCcCcc-cCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccccccch-hhhCCCCccEeccccc
Q 012450 137 LKSLKL-PFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYC 204 (463)
Q Consensus 137 l~~l~~-~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c 204 (463)
++.++. .+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|+++.++. .+..+++|+.|++++|
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 333322 2445556666666666666666555666666666666666655542 3455566666666555
No 101
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=5e-19 Score=186.66 Aligned_cols=186 Identities=19% Similarity=0.202 Sum_probs=95.4
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCCCCCCCCccEEEeec-cCCCccCccccCCCCccE
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPEISSAGNIEKILLDG-TAIEELPSSIGCLSRLLE 81 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~-~~i~~lp~~i~~l~~L~~ 81 (463)
.+++|+.|+|++ +.++.+ |..++++++|+.|++++|..+..+|.+ +.. +.....|..++.+++|+.
T Consensus 347 ~~~~L~~L~Ls~-n~L~~L--p~~i~~l~~L~~L~l~~n~~l~~l~~l----------l~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 347 TDEQLFRCELSV-EKSTVL--QSELESCKELQELEPENKWCLLTIILL----------MRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp TTTTSSSCCCCH-HHHHHH--HHHHHHHHHHHHHCTTCHHHHHHHHHH----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred cCccceeccCCh-hhHHhh--HHHHHHHHHHHHhccccchhhhhHHHH----------HHhcccccCCHHHHHHHHhccc
Confidence 456777777777 456666 677777777777777554211110000 000 011122333444444444
Q ss_pred Ee-eecCCCCCccch------hcCC--CCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccE
Q 012450 82 LN-LGDCKNLKTLPS------SLCK--LKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTY 152 (463)
Q Consensus 82 L~-l~~c~~l~~lp~------~l~~--l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~ 152 (463)
|+ ++.+ .+..++. .+.. ...|+.|++++|.++.+|. ++.+++|+.|++++|. ++.+|..+.++++|+.
T Consensus 414 L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~ 490 (567)
T 1dce_A 414 VDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEV 490 (567)
T ss_dssp HCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCE
T ss_pred Ccchhhc-ccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCE
Confidence 44 2221 1111110 0000 1135556666666665554 5556666666666554 3455555566666666
Q ss_pred EEeeCCCCCCcccccCCccccccccccccccccc--chhhhCCCCccEecccccc
Q 012450 153 LYLTDCAITELPESLGLLSSLEELYLERNNFERI--PESIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 153 L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~L~~c~ 205 (463)
|+|++|.++++| .++.+++|+.|+|++|+++.+ |..+..+++|+.|++++|+
T Consensus 491 L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 491 LQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp EECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred EECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 666666666655 555666666666666666555 5556666666666666653
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=1.3e-15 Score=151.69 Aligned_cols=168 Identities=23% Similarity=0.295 Sum_probs=108.6
Q ss_pred cEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCcc-cc-CCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEEC
Q 012450 34 VILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSS-IG-CLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTG 110 (463)
Q Consensus 34 ~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~-i~-~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 110 (463)
+.+++++ +.++.+|. .-.+.++.|+|++|.|+.++.. +. .+++|+.|++++|. +..++ ..+.++++|+.|++++
T Consensus 21 ~~l~c~~-~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCS-SCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCC-CCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCC
Confidence 4667666 45666765 1134577777777777766654 33 67777777777754 34443 4577777777777777
Q ss_pred CCCccCCc-cCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCccccc----CCcccccccccccccccc
Q 012450 111 SAIEELPS-PIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESL----GLLSSLEELYLERNNFER 185 (463)
Q Consensus 111 ~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l----~~l~~L~~L~Ls~n~l~~ 185 (463)
|.++.++. .+..+++|++|++++|......+..+.++++|+.|+|++|.+..+|..+ ..+++|+.|+|++|+++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77776654 4667777777777776644334555677777777777777777766554 457777777777777776
Q ss_pred cc-hhhhCCCC--ccEeccccc
Q 012450 186 IP-ESIIRLSK--LSSLLVSYC 204 (463)
Q Consensus 186 lp-~~l~~l~~--L~~L~L~~c 204 (463)
+| ..+..++. |+.|++++|
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSS
T ss_pred cCHHHhhhccHhhcceEEecCC
Confidence 66 34445554 255555554
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=2.8e-17 Score=163.88 Aligned_cols=198 Identities=17% Similarity=0.151 Sum_probs=110.9
Q ss_pred CCcceeecccccCcCCCCCc----ccccCCc-CccEEeeecCCCCCCC-CC-CCCC-----CCccEEEeeccCCCccCcc
Q 012450 5 GKLNQIIMAACNIFTKTPNP----SLIQHLN-KLVILNLSGCSKLKSL-PE-ISSA-----GNIEKILLDGTAIEELPSS 72 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~----~~~~~l~-~L~~L~L~~c~~l~~l-p~-l~~l-----~~L~~L~L~~~~i~~lp~~ 72 (463)
++|++|+|++|. +++.. + ..+..++ +|++|+|++| .++.. +. +..+ ++|++|++++|.++..+..
T Consensus 22 ~~L~~L~Ls~n~-l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 22 HGVTSLDLSLNN-LYSIS-TVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TTCCEEECTTSC-GGGSC-HHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCceEEEccCCC-CChHH-HHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 447777777744 44442 2 4555666 6777777775 33333 22 3322 6777777777776644322
Q ss_pred -----ccCC-CCccEEeeecCCCCCccchh----cCC-CCCCcEEEEECCCCc-----cCCccCCCCC-CccEEecCCCC
Q 012450 73 -----IGCL-SRLLELNLGDCKNLKTLPSS----LCK-LKSLEEICLTGSAIE-----ELPSPIECLS-ALCVLDLGDCK 135 (463)
Q Consensus 73 -----i~~l-~~L~~L~l~~c~~l~~lp~~----l~~-l~~L~~L~l~~~~i~-----~lp~~i~~l~-~L~~L~l~~c~ 135 (463)
+..+ ++|++|++++|......+.. +.. .++|++|++++|.++ .++..+..++ +|++|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 3344 67777777776532222222 333 247777777777666 2333334444 67777777765
Q ss_pred CCCcCcc----cCCCC-CCccEEEeeCCCCCC-----cccccCC-cccccccccccccccccc-----hhhhCCCCccEe
Q 012450 136 SLKSLKL----PFDGL-YSLTYLYLTDCAITE-----LPESLGL-LSSLEELYLERNNFERIP-----ESIIRLSKLSSL 199 (463)
Q Consensus 136 ~l~~l~~----~l~~l-~~L~~L~L~~~~l~~-----~p~~l~~-l~~L~~L~Ls~n~l~~lp-----~~l~~l~~L~~L 199 (463)
.-...+. .+... ++|+.|+|++|.+.+ ++..+.. .++|++|+|++|.++..+ ..+..+++|+.|
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 2222211 22333 467777777777665 4444444 346777777777765432 234556677777
Q ss_pred cccccc
Q 012450 200 LVSYCE 205 (463)
Q Consensus 200 ~L~~c~ 205 (463)
++++|.
T Consensus 259 ~L~~n~ 264 (362)
T 3goz_A 259 YLDYDI 264 (362)
T ss_dssp EEEHHH
T ss_pred EeccCC
Confidence 777764
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=4.5e-15 Score=137.38 Aligned_cols=148 Identities=25% Similarity=0.378 Sum_probs=98.4
Q ss_pred cEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCc-cccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECC
Q 012450 34 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGS 111 (463)
Q Consensus 34 ~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~ 111 (463)
+.+++++ ..++.+|. +. ++|+.|++++|.|+.++. .+..+++|+.|++++|......|..+.++++|+.|++++|
T Consensus 14 ~~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRG-KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTT-SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCC-CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4566665 45666665 33 577777777777776665 4677777777777776544444666777777777777777
Q ss_pred CCccCCcc-CCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCccc-ccCCccccccccccccccc
Q 012450 112 AIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFE 184 (463)
Q Consensus 112 ~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~ 184 (463)
.++.+|.. +..+++|++|++++|......+..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77777654 4567777777777766433334556667777777777777776543 3566677777777776653
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=4.4e-15 Score=137.46 Aligned_cols=145 Identities=26% Similarity=0.407 Sum_probs=121.8
Q ss_pred cEEEeeccCCCccCccccCCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCC
Q 012450 57 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDC 134 (463)
Q Consensus 57 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c 134 (463)
+.++++++.++++|..+. ++|+.|++++|. +..++ ..+..+++|+.|++++|.++.+ |..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 578889999999998764 789999999975 45554 4688999999999999999977 678899999999999998
Q ss_pred CCCCcCccc-CCCCCCccEEEeeCCCCCCc-ccccCCcccccccccccccccccch-hhhCCCCccEecccccc
Q 012450 135 KSLKSLKLP-FDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 135 ~~l~~l~~~-l~~l~~L~~L~L~~~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~ 205 (463)
. ++.+|.. +.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|+++.++. .+..+++|+.|++++|+
T Consensus 91 ~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 91 K-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred c-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 7 5556554 67899999999999999985 5678889999999999999988775 47788889999988874
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=4.9e-15 Score=137.13 Aligned_cols=146 Identities=26% Similarity=0.335 Sum_probs=87.5
Q ss_pred cEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCc--cccCCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEE
Q 012450 34 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPS--SIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLT 109 (463)
Q Consensus 34 ~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~ 109 (463)
+.+++++ +.++.+|. + ...+++|++++|.++.++. .+..+++|++|++++|. ++.++ ..+.++++|++|+++
T Consensus 14 ~~l~~s~-n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSN-QKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCS-SCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCC-CCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECC
Confidence 4666666 35566665 3 3345677777777776532 25666777777776654 33333 356666777777777
Q ss_pred CCCCccCCcc-CCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCc-ccccCCcccccccccccccc
Q 012450 110 GSAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNF 183 (463)
Q Consensus 110 ~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~-p~~l~~l~~L~~L~Ls~n~l 183 (463)
+|.++.++.. +..+++|++|++++|......|..+.++++|+.|+|++|.++.+ |..+..+++|+.|++++|.+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 7766665543 55666666666666653333344555666666666666666654 45555666666666666654
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=1e-14 Score=135.03 Aligned_cols=146 Identities=24% Similarity=0.259 Sum_probs=97.6
Q ss_pred cEEEeeccCCCccCccccCCCCccEEeeecCCCCCcc-c-hhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCC
Q 012450 57 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTL-P-SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGD 133 (463)
Q Consensus 57 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l-p-~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~ 133 (463)
+.++++++.++++|..+. ..+++|++++|. +..+ + ..+..+++|+.|++++|.++.++. .+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 467777777777776543 345677777754 3444 2 235677777777777777776654 567777777777777
Q ss_pred CCCCCcCcccCCCCCCccEEEeeCCCCCCc-ccccCCccccccccccccccccc-chhhhCCCCccEecccccc
Q 012450 134 CKSLKSLKLPFDGLYSLTYLYLTDCAITEL-PESLGLLSSLEELYLERNNFERI-PESIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 134 c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~ 205 (463)
|......+..+.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|+++.+ |..+..+++|+.|++++|+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 664333344466777777777777777764 55666777777777777777665 5566777777777777764
No 108
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.59 E-value=3.2e-15 Score=158.92 Aligned_cols=220 Identities=20% Similarity=0.203 Sum_probs=175.0
Q ss_pred CCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCC--CCCC-CCCCCCccEEEeeccCCCccCccccCCCCc
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLK--SLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRL 79 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~--~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L 79 (463)
.++.|+.+++.++. .... .....+++|+.|+++++.... ..+. ...+.+|+.|++..+.+..++..+..+++|
T Consensus 347 ~l~~L~~l~l~~n~-~~~~---~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L 422 (635)
T 4g8a_A 347 KLKSLKRLTFTSNK-GGNA---FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQL 422 (635)
T ss_dssp BCTTCCEEEEESCC-SCCB---CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTC
T ss_pred cchhhhhccccccc-CCCC---cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccc
Confidence 46778888888743 3333 345578999999999864322 2232 557889999999999888888888899999
Q ss_pred cEEeeecCCCCCccc-hhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCCCCc-CcccCCCCCCccEEEee
Q 012450 80 LELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKS-LKLPFDGLYSLTYLYLT 156 (463)
Q Consensus 80 ~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~-l~~~l~~l~~L~~L~L~ 156 (463)
+.+++.++......+ ..+..+++++.++++.|.+..+ +..+..+++|+.|++++|..... .|..+..+++|+.|+|+
T Consensus 423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502 (635)
T ss_dssp CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence 999999876655444 4567899999999999999865 45678899999999999975554 56678899999999999
Q ss_pred CCCCCCc-ccccCCcccccccccccccccccc-hhhhCCCCccEeccccccccccCCC----CCCCccEeeccCcc
Q 012450 157 DCAITEL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPK----LPCNLYWLDAQHCT 226 (463)
Q Consensus 157 ~~~l~~~-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~~----l~~~L~~L~i~~c~ 226 (463)
+|+++++ |..+..+++|++|+|++|+++.++ ..+..+++|+.|++++|......|. ++++|+.|++++.+
T Consensus 503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 9999985 677899999999999999998875 5688999999999999964443333 45778888887753
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=2.6e-14 Score=133.07 Aligned_cols=148 Identities=28% Similarity=0.350 Sum_probs=106.4
Q ss_pred ccEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCcc-CccccCCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEEC
Q 012450 33 LVILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEEL-PSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTG 110 (463)
Q Consensus 33 L~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 110 (463)
-+.++.++ ..++.+|. +..++|++|++++|.++.+ |..+..+++|++|++++|. +..+| ..+..+++|+.|++++
T Consensus 21 ~~~v~c~~-~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTT-SCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccC-CCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence 45566665 45667766 1137777888888777766 4456777788888887764 45554 3456778888888888
Q ss_pred CCCccCCcc-CCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCccc-ccCCccccccccccccccc
Q 012450 111 SAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFE 184 (463)
Q Consensus 111 ~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~ 184 (463)
|.++.++.. +..+++|++|++++|. ++.+|..+..+++|+.|+|++|.+..++. .+..+++|+.|++++|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 888777654 4677888888888766 55777777788888888888888887653 4677888888888888765
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=8.9e-15 Score=145.68 Aligned_cols=169 Identities=23% Similarity=0.312 Sum_probs=138.6
Q ss_pred ceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CC-CCCCccEEEeeccCCCccCc-cccCCCCccEEe
Q 012450 8 NQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--IS-SAGNIEKILLDGTAIEELPS-SIGCLSRLLELN 83 (463)
Q Consensus 8 ~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~-~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~ 83 (463)
+.+++++ +.++.+ |..+. +.++.|+|++| .++.++. +. .+++|++|+|++|.|+.++. .+..+++|++|+
T Consensus 21 ~~l~c~~-~~l~~i--P~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSK-QQLPNV--PQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCS-SCCSSC--CSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCC-CCcCcc--CccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 5788887 678888 55543 56999999996 5666665 55 89999999999999998875 589999999999
Q ss_pred eecCCCCCccc-hhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCCCCcCcccC----CCCCCccEEEeeC
Q 012450 84 LGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLPF----DGLYSLTYLYLTD 157 (463)
Q Consensus 84 l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~l~~~l----~~l~~L~~L~L~~ 157 (463)
+++|. +..++ ..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|. ++.+|... ..+++|+.|+|++
T Consensus 95 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 95 LSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp CCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCS
T ss_pred CCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCC
Confidence 99975 55554 4688999999999999999987 5678999999999999987 66676643 5789999999999
Q ss_pred CCCCCcc-cccCCccc--cccccccccccc
Q 012450 158 CAITELP-ESLGLLSS--LEELYLERNNFE 184 (463)
Q Consensus 158 ~~l~~~p-~~l~~l~~--L~~L~Ls~n~l~ 184 (463)
|.+..+| ..+..++. |+.|+|++|.+.
T Consensus 173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 9999976 35666776 489999999875
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=4.3e-15 Score=131.20 Aligned_cols=126 Identities=22% Similarity=0.231 Sum_probs=61.1
Q ss_pred CCccEEEeeccCCC--ccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEec
Q 012450 54 GNIEKILLDGTAIE--ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDL 131 (463)
Q Consensus 54 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 131 (463)
++|++|++++|.++ .+|..+..+++|++|++++|. +..+ ..+..+++|+.|++++|.++.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~---------------- 85 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFG---------------- 85 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCS----------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCch----------------
Confidence 44455555555444 444444445555555555543 2333 334444455555555544443
Q ss_pred CCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc--cccCCcccccccccccccccccch----hhhCCCCccEeccccc
Q 012450 132 GDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP--ESLGLLSSLEELYLERNNFERIPE----SIIRLSKLSSLLVSYC 204 (463)
Q Consensus 132 ~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~c 204 (463)
.+|..+..+++|+.|++++|.++++| ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|
T Consensus 86 -------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 86 -------GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp -------CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred -------HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 23332333444555555555554433 344555555555555555554443 4555555555555555
No 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=3.1e-17 Score=168.33 Aligned_cols=218 Identities=17% Similarity=0.225 Sum_probs=118.5
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCC-----CCCC-CCCCCCccEEEeeccCCCcc-C-ccccCC
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLK-----SLPE-ISSAGNIEKILLDGTAIEEL-P-SSIGCL 76 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~-----~lp~-l~~l~~L~~L~L~~~~i~~l-p-~~i~~l 76 (463)
++|++|+|+++ .+++......+..+++|++|++++|. +. .++. +..+++|++|++++|.++.. + .....+
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 56677777663 34433212235566777777777764 33 2233 55567777777777766531 1 112233
Q ss_pred C----CccEEeeecCCCCC----ccchhcCCCCCCcEEEEECCCCccC-----Ccc-CCCCCCccEEecCCCCCCCc---
Q 012450 77 S----RLLELNLGDCKNLK----TLPSSLCKLKSLEEICLTGSAIEEL-----PSP-IECLSALCVLDLGDCKSLKS--- 139 (463)
Q Consensus 77 ~----~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~l-----p~~-i~~l~~L~~L~l~~c~~l~~--- 139 (463)
+ +|++|++++|.... .++..+..+++|++|++++|.++.. ... ....++|++|++++|..-..
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 3 57777777764331 3466666777777777777766521 111 22345677777776652221
Q ss_pred -CcccCCCCCCccEEEeeCCCCCCc-ccccC-----Ccccccccccccccccc-----cchhhhCCCCccEecccccccc
Q 012450 140 -LKLPFDGLYSLTYLYLTDCAITEL-PESLG-----LLSSLEELYLERNNFER-----IPESIIRLSKLSSLLVSYCERL 207 (463)
Q Consensus 140 -l~~~l~~l~~L~~L~L~~~~l~~~-p~~l~-----~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~c~~l 207 (463)
++..+..+++|+.|++++|.+.+. +..+. ..++|++|++++|.++. ++..+..+++|+.|++++|. +
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l 239 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-L 239 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-C
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-C
Confidence 233344556677777777666541 11111 24466677777666653 45556666667777776663 2
Q ss_pred cc-----C----CCCCCCccEeeccCc
Q 012450 208 QS-----L----PKLPCNLYWLDAQHC 225 (463)
Q Consensus 208 ~~-----l----~~l~~~L~~L~i~~c 225 (463)
+. + ..-.++|+.|++++|
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 21 1 112345666666665
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=1.2e-15 Score=165.46 Aligned_cols=189 Identities=17% Similarity=0.158 Sum_probs=93.0
Q ss_pred CCcceeecccccCcCCCCCcccccCCcCccEEeeec----CCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCc
Q 012450 5 GKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSG----CSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRL 79 (463)
Q Consensus 5 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~----c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L 79 (463)
+.++.|+|.+ +.+... +..+....+|..+.+.. ++.+...+. +..+++|+.|+|++|.+..+|..+..+++|
T Consensus 173 ~~~~~l~L~~-n~~~~~--~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFA-NGKDEA--NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CccceEEeeC-CCCCcc--hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 3456666665 333333 33333333444443332 122333333 666777777777777777777777777777
Q ss_pred cEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCC
Q 012450 80 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCA 159 (463)
Q Consensus 80 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~ 159 (463)
++|+|++|. +..+|..++++++|+.|+|++|.++.+|..++.+++|++|+|++|. ++.+|..+..+++|+.|+|++|.
T Consensus 250 ~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSC
T ss_pred CEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCc
Confidence 777777753 4477777777777777777777777777777777777777777764 56677667777777777777777
Q ss_pred CCC-cccccCCcc-ccccccccccccc-ccchhhhCCCCccEeccccc
Q 012450 160 ITE-LPESLGLLS-SLEELYLERNNFE-RIPESIIRLSKLSSLLVSYC 204 (463)
Q Consensus 160 l~~-~p~~l~~l~-~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c 204 (463)
++. +|..+..+. .+..|+|++|.++ .+| ..|+.|+++++
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 775 444443332 2234567777664 233 24555666655
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.2e-14 Score=128.26 Aligned_cols=130 Identities=24% Similarity=0.243 Sum_probs=104.4
Q ss_pred CCCCCcEEEEECCCCc--cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCC-cccccCCcccccc
Q 012450 99 KLKSLEEICLTGSAIE--ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEE 175 (463)
Q Consensus 99 ~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~ 175 (463)
..++|+.|++++|.++ .+|..+..+++|++|++++|. ++.+ ..+..+++|+.|++++|.+.+ +|..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3467778888888777 777777778888888888776 5555 558889999999999999998 7877778999999
Q ss_pred cccccccccccc--hhhhCCCCccEeccccccccccCCC-------CCCCccEeeccCcccccccc
Q 012450 176 LYLERNNFERIP--ESIIRLSKLSSLLVSYCERLQSLPK-------LPCNLYWLDAQHCTTLESLS 232 (463)
Q Consensus 176 L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~c~~l~~l~~-------l~~~L~~L~i~~c~~L~~l~ 232 (463)
|++++|.++.+| ..+..+++|+.|++++|+ +..++. ..++|+.|++.+|. ++.++
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 999999999876 688999999999999995 445544 24689999998875 33343
No 115
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=1.2e-16 Score=163.94 Aligned_cols=220 Identities=20% Similarity=0.252 Sum_probs=157.9
Q ss_pred CCCcceeecccccCcCCCC---CcccccCCcCccEEeeecCCCCCCCCC--CC-----CCCCccEEEeeccCCCc-----
Q 012450 4 HGKLNQIIMAACNIFTKTP---NPSLIQHLNKLVILNLSGCSKLKSLPE--IS-----SAGNIEKILLDGTAIEE----- 68 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~~~~---~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~-----~l~~L~~L~L~~~~i~~----- 68 (463)
.++|++|+|++|. ++... .+..+..+++|+.|++++|. ++.... +. ..++|++|++++|.++.
T Consensus 141 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 218 (461)
T 1z7x_W 141 QCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218 (461)
T ss_dssp TCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred CCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence 5689999999974 43321 03456678999999999975 433211 21 36699999999998885
Q ss_pred cCccccCCCCccEEeeecCCCCCcc------chhcCCCCCCcEEEEECCCCcc-----CCccCCCCCCccEEecCCCCCC
Q 012450 69 LPSSIGCLSRLLELNLGDCKNLKTL------PSSLCKLKSLEEICLTGSAIEE-----LPSPIECLSALCVLDLGDCKSL 137 (463)
Q Consensus 69 lp~~i~~l~~L~~L~l~~c~~l~~l------p~~l~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~l 137 (463)
++..+..+++|++|++++|. +... +.....+++|++|++++|.++. ++..+..+++|++|++++|..-
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 57778889999999999974 3322 2223468999999999999886 6777778999999999998632
Q ss_pred Cc----Cccc-CCCCCCccEEEeeCCCCCC-----cccccCCccccccccccccccccc-c----hhhhC-CCCccEecc
Q 012450 138 KS----LKLP-FDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFERI-P----ESIIR-LSKLSSLLV 201 (463)
Q Consensus 138 ~~----l~~~-l~~l~~L~~L~L~~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~~l-p----~~l~~-l~~L~~L~L 201 (463)
.. +... ....++|+.|++++|.+++ ++..+..+++|++|++++|.++.. + ..+.. .++|+.|++
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence 11 1111 1234689999999999876 466677889999999999988642 2 22322 679999999
Q ss_pred ccccccc----cCCCC---CCCccEeeccCcc
Q 012450 202 SYCERLQ----SLPKL---PCNLYWLDAQHCT 226 (463)
Q Consensus 202 ~~c~~l~----~l~~l---~~~L~~L~i~~c~ 226 (463)
++|..-. .++.. .++|++|+++++.
T Consensus 378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 9984221 34432 4689999998874
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=1.1e-16 Score=168.64 Aligned_cols=172 Identities=22% Similarity=0.210 Sum_probs=141.7
Q ss_pred CCCCCccEEEeeccCCCccCccccCCCCccEEeeecCC-------------CCCccchhcCCCCCCcEEE-EECCC----
Q 012450 51 SSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCK-------------NLKTLPSSLCKLKSLEEIC-LTGSA---- 112 (463)
Q Consensus 51 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~-------------~l~~lp~~l~~l~~L~~L~-l~~~~---- 112 (463)
...++|+.|+|++|.++.+|..++++++|+.|++++|. .....|..++.+++|+.|+ ++.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 56889999999999999999999999999999987653 3445667778888888888 45443
Q ss_pred ---------CccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccc
Q 012450 113 ---------IEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNF 183 (463)
Q Consensus 113 ---------i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l 183 (463)
++.++. ..|+.|++++|. ++.+|. +..+++|+.|+|++|.++.+|..++.+++|+.|+|++|++
T Consensus 426 ~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 426 RSKFLLENSVLKMEY-----ADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498 (567)
T ss_dssp HHHHHHHHHHHHHHH-----TTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred hhhhhhcccccccCc-----cCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCC
Confidence 333332 258999999986 677887 9999999999999999999999999999999999999999
Q ss_pred cccchhhhCCCCccEeccccccccccC--CC---CCCCccEeeccCcccccccc
Q 012450 184 ERIPESIIRLSKLSSLLVSYCERLQSL--PK---LPCNLYWLDAQHCTTLESLS 232 (463)
Q Consensus 184 ~~lp~~l~~l~~L~~L~L~~c~~l~~l--~~---l~~~L~~L~i~~c~~L~~l~ 232 (463)
+.+| .+..+++|+.|+|++|. ++.+ |. -.++|+.|+++++. ++.++
T Consensus 499 ~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 499 ENVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp CCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred CCCc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 9999 89999999999999984 4554 43 24689999998864 55444
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=9.6e-16 Score=152.72 Aligned_cols=214 Identities=13% Similarity=0.056 Sum_probs=154.6
Q ss_pred eeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCC-----C-CCCCC-CccEEEeeccCCCcc-CccccCC----
Q 012450 9 QIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLP-----E-ISSAG-NIEKILLDGTAIEEL-PSSIGCL---- 76 (463)
Q Consensus 9 ~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp-----~-l~~l~-~L~~L~L~~~~i~~l-p~~i~~l---- 76 (463)
.++++++..-..+ +..+...++|++|+|++|. ++..+ . +..++ +|++|++++|.++.. +..+..+
T Consensus 2 ~~~ls~n~~~~~~--~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGSNPV--EEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EEECCCCTTCCHH--HHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccccccccchHHH--HHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 3566764433344 5566666779999999975 66554 3 66777 999999999999855 3334443
Q ss_pred -CCccEEeeecCCCCCccchh----cCCC-CCCcEEEEECCCCccCCc-----cCCC-CCCccEEecCCCCCCC----cC
Q 012450 77 -SRLLELNLGDCKNLKTLPSS----LCKL-KSLEEICLTGSAIEELPS-----PIEC-LSALCVLDLGDCKSLK----SL 140 (463)
Q Consensus 77 -~~L~~L~l~~c~~l~~lp~~----l~~l-~~L~~L~l~~~~i~~lp~-----~i~~-l~~L~~L~l~~c~~l~----~l 140 (463)
++|++|++++|......+.. +..+ ++|++|++++|.++..+. .+.. .++|++|++++|..-. .+
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 99999999998754444443 4445 899999999999987654 2344 3699999999987332 23
Q ss_pred cccCCCCC-CccEEEeeCCCCCCcc-----cccCCc-ccccccccccccccc-----cchhhhC-CCCccEecccccccc
Q 012450 141 KLPFDGLY-SLTYLYLTDCAITELP-----ESLGLL-SSLEELYLERNNFER-----IPESIIR-LSKLSSLLVSYCERL 207 (463)
Q Consensus 141 ~~~l~~l~-~L~~L~L~~~~l~~~p-----~~l~~l-~~L~~L~Ls~n~l~~-----lp~~l~~-l~~L~~L~L~~c~~l 207 (463)
+..+..++ +|+.|+|++|.+++.. ..+..+ ++|++|+|++|.++. ++..+.. .++|+.|++++|. +
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l 237 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-L 237 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-C
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-C
Confidence 33344555 9999999999998632 234455 599999999999976 7777776 4599999999985 3
Q ss_pred ccCC--------CCCCCccEeeccCcc
Q 012450 208 QSLP--------KLPCNLYWLDAQHCT 226 (463)
Q Consensus 208 ~~l~--------~l~~~L~~L~i~~c~ 226 (463)
+..+ .-.++|+.|++++|.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 3322 234679999998885
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=1.9e-14 Score=124.44 Aligned_cols=126 Identities=22% Similarity=0.218 Sum_probs=86.6
Q ss_pred CCccEEeeecCCCC-CccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEe
Q 012450 77 SRLLELNLGDCKNL-KTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYL 155 (463)
Q Consensus 77 ~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L 155 (463)
++|+.|++++|... ..+|..+..+++|+.|++++|.++.+ ..++.+++|++|++++|.....+|..+..+++|+.|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 55666666665432 25555556666666666666666665 55666777777777776644336655556778888888
Q ss_pred eCCCCCCcc--cccCCcccccccccccccccccch----hhhCCCCccEecccc
Q 012450 156 TDCAITELP--ESLGLLSSLEELYLERNNFERIPE----SIIRLSKLSSLLVSY 203 (463)
Q Consensus 156 ~~~~l~~~p--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~ 203 (463)
++|.+++++ ..+..+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888887754 677888888888888888877664 577788888888763
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.50 E-value=7.5e-16 Score=163.07 Aligned_cols=173 Identities=17% Similarity=0.071 Sum_probs=93.7
Q ss_pred CCCCccEEEeeccCCCc-----cCccccCCCCccEEeeecCCCC----CccchhcCCCCCCcEEEEECCCCccCCccCCC
Q 012450 52 SAGNIEKILLDGTAIEE-----LPSSIGCLSRLLELNLGDCKNL----KTLPSSLCKLKSLEEICLTGSAIEELPSPIEC 122 (463)
Q Consensus 52 ~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~l----~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~ 122 (463)
.+++|++|+|++|.++. ++.....+++|+.|++++|... ..++..+.++++|+.|++++|.+..+|..+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 34555555555554331 1222334455555555554322 12333344556666666666666555555555
Q ss_pred CCCccEEecCCCCCC---CcCcccCCCCCCccEEEeeCCCCCCcccccCCccccccccccccccc--ccchhhhCCCCcc
Q 012450 123 LSALCVLDLGDCKSL---KSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNFE--RIPESIIRLSKLS 197 (463)
Q Consensus 123 l~~L~~L~l~~c~~l---~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~ 197 (463)
+++|++|+++.+... ...+..+..+++|+.|+++++....+|..+..+++|++|++++|.++ .++..+..+++|+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 666666666543221 12223355566677777766655556666777777778887777754 2334456777777
Q ss_pred EeccccccccccCC---CCCCCccEeeccC
Q 012450 198 SLLVSYCERLQSLP---KLPCNLYWLDAQH 224 (463)
Q Consensus 198 ~L~L~~c~~l~~l~---~l~~~L~~L~i~~ 224 (463)
.|+++++..-..++ ...++|+.|++.+
T Consensus 322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp EEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred EEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 77777442222222 1235577777774
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=1.3e-13 Score=122.83 Aligned_cols=102 Identities=23% Similarity=0.273 Sum_probs=59.7
Q ss_pred CCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccC-CCCCCccEEEeeCCCCCCccc--ccCCccccccccc
Q 012450 102 SLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPF-DGLYSLTYLYLTDCAITELPE--SLGLLSSLEELYL 178 (463)
Q Consensus 102 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l-~~l~~L~~L~L~~~~l~~~p~--~l~~l~~L~~L~L 178 (463)
+|+.|++++|.++.+ ..+..+++|++|++++|. ++.+|..+ ..+++|+.|++++|.+.++|. .+..+++|+.|++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 455555555554444 344455555555555544 33333322 556666666666666666655 5666677777777
Q ss_pred ccccccccchh----hhCCCCccEecccccc
Q 012450 179 ERNNFERIPES----IIRLSKLSSLLVSYCE 205 (463)
Q Consensus 179 s~n~l~~lp~~----l~~l~~L~~L~L~~c~ 205 (463)
++|.++.+|.. +..+++|+.|++++|.
T Consensus 121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 77777666653 6667777777776663
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=3.1e-14 Score=154.51 Aligned_cols=190 Identities=21% Similarity=0.232 Sum_probs=116.0
Q ss_pred CcCccEEeeecCCCCCCCCC-CCCCCCccEEE-----eeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCC
Q 012450 30 LNKLVILNLSGCSKLKSLPE-ISSAGNIEKIL-----LDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSL 103 (463)
Q Consensus 30 l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~-----L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L 103 (463)
.+.++.|+|.++ .+...+. +-....|+.+. +..+.+...+..+..+++|+.|+|++|. +..+|..+..+++|
T Consensus 172 ~~~~~~l~L~~n-~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFAN-GKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCSC
T ss_pred CCccceEEeeCC-CCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCC
Confidence 356788888774 4444443 32333333333 3334455556678899999999999975 56888888899999
Q ss_pred cEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcccccCCcccccccccccccc
Q 012450 104 EEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELPESLGLLSSLEELYLERNNF 183 (463)
Q Consensus 104 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p~~l~~l~~L~~L~Ls~n~l 183 (463)
+.|+|++|.++.+|..++.+++|++|+|++|. ++.+|..+.++++|+.|+|++|.+..+|..++.+++|+.|+|++|.+
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 99999999999999999999999999999988 66889889999999999999999999999999999999999999999
Q ss_pred cc-cchhhhCCC-CccEeccccccccccCCCCCCCccEeeccCc
Q 012450 184 ER-IPESIIRLS-KLSSLLVSYCERLQSLPKLPCNLYWLDAQHC 225 (463)
Q Consensus 184 ~~-lp~~l~~l~-~L~~L~L~~c~~l~~l~~l~~~L~~L~i~~c 225 (463)
+. +|..+..+. .+..|++++|..-.. +|..++.|++.+.
T Consensus 329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~---~p~~l~~l~l~~n 369 (727)
T 4b8c_D 329 EKQFLKILTEKSVTGLIFYLRDNRPEIP---LPHERRFIEINTD 369 (727)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCC---------
T ss_pred CCCChHHHhhcchhhhHHhhccCcccCc---CccccceeEeecc
Confidence 74 555554432 223467888755433 4557777777655
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=5.1e-14 Score=121.66 Aligned_cols=122 Identities=25% Similarity=0.333 Sum_probs=61.2
Q ss_pred CccEEEeeccCCC--ccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCcc-CCccCCCCCCccEEec
Q 012450 55 NIEKILLDGTAIE--ELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEE-LPSPIECLSALCVLDL 131 (463)
Q Consensus 55 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l 131 (463)
+|+.|++++|.++ .+|..+..+++|++|++++|. +..+ ..+..+++|+.|++++|.++. +|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3344444444443 344434444444444444432 2222 334444444444554444444 3333334555555555
Q ss_pred CCCCCCCcCc--ccCCCCCCccEEEeeCCCCCCccc----ccCCcccccccccc
Q 012450 132 GDCKSLKSLK--LPFDGLYSLTYLYLTDCAITELPE----SLGLLSSLEELYLE 179 (463)
Q Consensus 132 ~~c~~l~~l~--~~l~~l~~L~~L~L~~~~l~~~p~----~l~~l~~L~~L~Ls 179 (463)
++|. ++.++ ..+..+++|+.|++++|.++++|. .+..+++|+.|+++
T Consensus 96 s~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5544 33322 345666667777777776666554 56667777777765
No 123
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.44 E-value=6.1e-15 Score=156.06 Aligned_cols=195 Identities=18% Similarity=0.147 Sum_probs=119.7
Q ss_pred cceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCC----CCC-CCCCCCccEEEeeccCCC-----ccCccccCC
Q 012450 7 LNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKS----LPE-ISSAGNIEKILLDGTAIE-----ELPSSIGCL 76 (463)
Q Consensus 7 L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~----lp~-l~~l~~L~~L~L~~~~i~-----~lp~~i~~l 76 (463)
|++|+|++|..++....+....++++|++|+|++|..... ++. ...+++|++|++++|.++ .++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 8888888876443221123344778888888888743221 122 345778888888887765 334445667
Q ss_pred CCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCc----cCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccE
Q 012450 77 SRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE----ELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTY 152 (463)
Q Consensus 77 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~----~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~ 152 (463)
++|+.|++++|. +..+|..+.++++|+.|++++.... ..+..+..+++|+.|+++++. ...+|..+..+++|++
T Consensus 220 ~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 220 RSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRK 297 (592)
T ss_dssp TTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCE
T ss_pred CCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcE
Confidence 888888888764 4456667777778888887643221 334455666777777776642 3445555666677777
Q ss_pred EEeeCCCCCC--cccccCCcccccccccccccc-cccchhhhCCCCccEecccc
Q 012450 153 LYLTDCAITE--LPESLGLLSSLEELYLERNNF-ERIPESIIRLSKLSSLLVSY 203 (463)
Q Consensus 153 L~L~~~~l~~--~p~~l~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~~ 203 (463)
|++++|.+.+ ++..+..+++|++|+++++.. ..++.....+++|++|++++
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 7777777554 333456677777777763221 13444445566677777763
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=9.6e-14 Score=123.61 Aligned_cols=129 Identities=19% Similarity=0.290 Sum_probs=78.5
Q ss_pred CCCccEEEeeccCCCccCccccCC-CCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccC-CCCCCccEEe
Q 012450 53 AGNIEKILLDGTAIEELPSSIGCL-SRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPI-ECLSALCVLD 130 (463)
Q Consensus 53 l~~L~~L~L~~~~i~~lp~~i~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~ 130 (463)
+.+|+.|++++|.++.++. +..+ ++|++|++++|. +..+ ..+..+++|+.|++++|.++.+|+.+ ..+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 3444444444444444433 2222 255555555542 3333 34555566666666666666555443 5566666666
Q ss_pred cCCCCCCCcCcc--cCCCCCCccEEEeeCCCCCCcccc----cCCcccccccccccccccc
Q 012450 131 LGDCKSLKSLKL--PFDGLYSLTYLYLTDCAITELPES----LGLLSSLEELYLERNNFER 185 (463)
Q Consensus 131 l~~c~~l~~l~~--~l~~l~~L~~L~L~~~~l~~~p~~----l~~l~~L~~L~Ls~n~l~~ 185 (463)
+++|. ++.+|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|....
T Consensus 95 L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 95 LTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 66654 355554 566778888888888888877764 7888999999999887654
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.42 E-value=7.5e-13 Score=119.63 Aligned_cols=124 Identities=24% Similarity=0.332 Sum_probs=59.2
Q ss_pred cEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCcc--ccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEEC
Q 012450 34 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSS--IGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTG 110 (463)
Q Consensus 34 ~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~--i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 110 (463)
+.+++++ +.++.+|. +. .+|++|++++|.++.++.. ++.+++|++|++++|......|..+.++++|+.|++++
T Consensus 11 ~~l~~s~-~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCC-CCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4555555 24455554 22 2555555555555555432 45555555555555443333344555555555555555
Q ss_pred CCCccCCcc-CCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCC
Q 012450 111 SAIEELPSP-IECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAI 160 (463)
Q Consensus 111 ~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l 160 (463)
|.++.++.. +..+++|++|++++|......|..+..+++|+.|++++|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 555544332 34444444444444432222233344444444444444433
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=9e-13 Score=119.09 Aligned_cols=125 Identities=30% Similarity=0.377 Sum_probs=99.1
Q ss_pred cEEEeeccCCCccCccccCCCCccEEeeecCCCCCccch--hcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCC
Q 012450 57 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPS--SLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGD 133 (463)
Q Consensus 57 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~ 133 (463)
+.++++++.++++|..+.. +|++|++++|. +..++. .+..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 6889999999999886643 89999999874 555553 378889999999999998877 66788888899999988
Q ss_pred CCCCCcCcccCCCCCCccEEEeeCCCCCC-cccccCCccccccccccccccc
Q 012450 134 CKSLKSLKLPFDGLYSLTYLYLTDCAITE-LPESLGLLSSLEELYLERNNFE 184 (463)
Q Consensus 134 c~~l~~l~~~l~~l~~L~~L~L~~~~l~~-~p~~l~~l~~L~~L~Ls~n~l~ 184 (463)
|......+..+.++++|+.|+|++|.++. .|..+..+++|++|++++|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 87444444457788888888888888887 4667788888888888888775
No 127
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.41 E-value=7.1e-15 Score=155.53 Aligned_cols=198 Identities=20% Similarity=0.251 Sum_probs=117.6
Q ss_pred CCCCcceeecccccCcCCCCCccccc-CCcCccEEeeecCCCCCC--CCC-CCCCCCccEEEeeccCCCc-----cCccc
Q 012450 3 HHGKLNQIIMAACNIFTKTPNPSLIQ-HLNKLVILNLSGCSKLKS--LPE-ISSAGNIEKILLDGTAIEE-----LPSSI 73 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~~~~~-~l~~L~~L~L~~c~~l~~--lp~-l~~l~~L~~L~L~~~~i~~-----lp~~i 73 (463)
.+++|++|+|++|. +++.. ...+. .+++|++|++++|..++. ++. +..+++|++|++++|.++. ++...
T Consensus 103 ~~~~L~~L~L~~~~-~~~~~-~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-VTDDC-LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HCTTCCEEEEESCB-CCHHH-HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred hCCCCCeEEeeCcE-EcHHH-HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 46788888888865 33221 23333 578888888888765544 334 3467788888888776542 23333
Q ss_pred cCCCCccEEeeecCC-CCC--ccchhcCCCCCCcEEEEECC-CCccCCccCCCCCCccEEecCCC---------------
Q 012450 74 GCLSRLLELNLGDCK-NLK--TLPSSLCKLKSLEEICLTGS-AIEELPSPIECLSALCVLDLGDC--------------- 134 (463)
Q Consensus 74 ~~l~~L~~L~l~~c~-~l~--~lp~~l~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~c--------------- 134 (463)
..+++|+.|++++|. .+. .++..+.++++|+.|++++| .+..++..+..+++|++|+++.+
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 466778888887765 111 12222345677888888776 34445555556666666664433
Q ss_pred ----CCCCc-----------CcccCCCCCCccEEEeeCCCCCC--cccccCCccccccccccccccc--ccchhhhCCCC
Q 012450 135 ----KSLKS-----------LKLPFDGLYSLTYLYLTDCAITE--LPESLGLLSSLEELYLERNNFE--RIPESIIRLSK 195 (463)
Q Consensus 135 ----~~l~~-----------l~~~l~~l~~L~~L~L~~~~l~~--~p~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~ 195 (463)
+.++. ++..+..+++|+.|++++|.+.+ +...+..+++|++|++++| ++ .++.....+++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 22221 22222345778888888877654 4444567778888888777 32 23333445777
Q ss_pred ccEecccc
Q 012450 196 LSSLLVSY 203 (463)
Q Consensus 196 L~~L~L~~ 203 (463)
|+.|++.+
T Consensus 340 L~~L~L~~ 347 (594)
T 2p1m_B 340 LRELRVFP 347 (594)
T ss_dssp CCEEEEEC
T ss_pred CCEEEEec
Confidence 77777733
No 128
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.40 E-value=2.2e-15 Score=159.38 Aligned_cols=221 Identities=18% Similarity=0.112 Sum_probs=151.4
Q ss_pred CCCCcceeecccccCcCCCCCc-------------ccccCCcCccEEeeecCCCCCCCCC-CC-CCCCccEEEeecc-CC
Q 012450 3 HHGKLNQIIMAACNIFTKTPNP-------------SLIQHLNKLVILNLSGCSKLKSLPE-IS-SAGNIEKILLDGT-AI 66 (463)
Q Consensus 3 ~~~~L~~L~L~~c~~l~~~~~~-------------~~~~~l~~L~~L~L~~c~~l~~lp~-l~-~l~~L~~L~L~~~-~i 66 (463)
.+++|++|++++|..+.+.... .....+++|+.|+|++|......+. +. .+++|++|++++| .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 5789999999999877654211 1234789999999999852222222 33 5899999999998 66
Q ss_pred Cc--cCccccCCCCccEEeeecCCCCC----ccchhcCCCCCCcEEEEECCC--Cc--cCCccCCCCCCccEEecCCCCC
Q 012450 67 EE--LPSSIGCLSRLLELNLGDCKNLK----TLPSSLCKLKSLEEICLTGSA--IE--ELPSPIECLSALCVLDLGDCKS 136 (463)
Q Consensus 67 ~~--lp~~i~~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~--i~--~lp~~i~~l~~L~~L~l~~c~~ 136 (463)
+. ++..+..+++|++|++++|.... .++.....+++|+.|++++|. +. .++..+..+++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 53 55556689999999999986322 233334578899999999986 22 2223345579999999999976
Q ss_pred CCcCcccCCCCCCccEEEeeCCCC-------------------------------CCcccccCCcccccccccccccccc
Q 012450 137 LKSLKLPFDGLYSLTYLYLTDCAI-------------------------------TELPESLGLLSSLEELYLERNNFER 185 (463)
Q Consensus 137 l~~l~~~l~~l~~L~~L~L~~~~l-------------------------------~~~p~~l~~l~~L~~L~Ls~n~l~~ 185 (463)
++.++..+..+++|+.|+++.+.. ..++..+..+++|++|++++|.++.
T Consensus 224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303 (594)
T ss_dssp HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence 666666667778888887655421 1133334467888888888888652
Q ss_pred --cchhhhCCCCccEeccccccccccCC---CCCCCccEeecc
Q 012450 186 --IPESIIRLSKLSSLLVSYCERLQSLP---KLPCNLYWLDAQ 223 (463)
Q Consensus 186 --lp~~l~~l~~L~~L~L~~c~~l~~l~---~l~~~L~~L~i~ 223 (463)
++..+..+++|+.|++++|..-..++ ...++|+.|++.
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEe
Confidence 44456788889999988873211121 224567778773
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.39 E-value=1.8e-12 Score=117.22 Aligned_cols=123 Identities=27% Similarity=0.333 Sum_probs=58.3
Q ss_pred EEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCCCC
Q 012450 58 KILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDCKS 136 (463)
Q Consensus 58 ~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~ 136 (463)
.++++++.++++|..+. ++|++|++++| .+..+|..+.++++|+.|++++|.++.++. .+..+++|++|++++|..
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 34444444444444322 34444444443 233444444445555555555555544432 244444444444444442
Q ss_pred CCcCcccCCCCCCccEEEeeCCCCCCccc-ccCCcccccccccccccc
Q 012450 137 LKSLKLPFDGLYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNF 183 (463)
Q Consensus 137 l~~l~~~l~~l~~L~~L~L~~~~l~~~p~-~l~~l~~L~~L~Ls~n~l 183 (463)
....+..+.++++|+.|+|++|.++.+|. .+..+++|+.|++++|.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 22222234555555566666555555443 244555666666666554
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.36 E-value=6.9e-12 Score=111.48 Aligned_cols=124 Identities=30% Similarity=0.484 Sum_probs=62.0
Q ss_pred cEEEeeccCCCccCccccCCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCC
Q 012450 57 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDC 134 (463)
Q Consensus 57 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c 134 (463)
+.+++++++++.+|..+ .++|+.|++++|. +..+| ..+..+++|++|++++|.++.++.. +..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 34445555555554332 2455555555543 22332 2344555555555555555555433 345555555555554
Q ss_pred CCCCcCcc-cCCCCCCccEEEeeCCCCCCcccc-cCCccccccccccccccc
Q 012450 135 KSLKSLKL-PFDGLYSLTYLYLTDCAITELPES-LGLLSSLEELYLERNNFE 184 (463)
Q Consensus 135 ~~l~~l~~-~l~~l~~L~~L~L~~~~l~~~p~~-l~~l~~L~~L~Ls~n~l~ 184 (463)
. ++.++. .+..+++|+.|++++|.++.+|.. +..+++|++|++++|.+.
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 K-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 4 222222 244555666666666666555443 345566666666666554
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=6.4e-12 Score=113.64 Aligned_cols=124 Identities=19% Similarity=0.338 Sum_probs=99.8
Q ss_pred cEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCC
Q 012450 34 VILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSA 112 (463)
Q Consensus 34 ~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 112 (463)
+.+++++ +.++.+|. + .++|++|++++|.++.+|..+..+++|++|++++|......+..+.++++|++|++++|.
T Consensus 13 ~~l~~~~-~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTT-SCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCC-CCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 5677777 46777776 3 368899999999999888888899999999999875444444668889999999999999
Q ss_pred CccCCc-cCCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCCC
Q 012450 113 IEELPS-PIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAIT 161 (463)
Q Consensus 113 i~~lp~-~i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l~ 161 (463)
++.++. .+..+++|++|++++|. ++.++. .+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 988865 58889999999999887 555554 4778899999999998765
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=2.2e-14 Score=130.34 Aligned_cols=116 Identities=24% Similarity=0.339 Sum_probs=59.9
Q ss_pred CCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccC
Q 012450 65 AIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPF 144 (463)
Q Consensus 65 ~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l 144 (463)
.++++|..+..+++|++|++++|. +..+| .+..+++|+.|++++|.++.+|..+..+++|++|++++|. ++.+| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-cc
Confidence 344444455555566666665542 33344 4555556666666665555555444444445555555443 33333 24
Q ss_pred CCCCCccEEEeeCCCCCCccc--ccCCccccccccccccccc
Q 012450 145 DGLYSLTYLYLTDCAITELPE--SLGLLSSLEELYLERNNFE 184 (463)
Q Consensus 145 ~~l~~L~~L~L~~~~l~~~p~--~l~~l~~L~~L~Ls~n~l~ 184 (463)
..+++|+.|++++|.+.+++. .+..+++|++|++++|.++
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 445555555555555555432 4555555555555555553
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.29 E-value=7.9e-12 Score=122.58 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=53.9
Q ss_pred CCCcceeecccccCcC--------------------CCCCcccccC--------CcCccEEeeecCCCCCCCCC--CCCC
Q 012450 4 HGKLNQIIMAACNIFT--------------------KTPNPSLIQH--------LNKLVILNLSGCSKLKSLPE--ISSA 53 (463)
Q Consensus 4 ~~~L~~L~L~~c~~l~--------------------~~~~~~~~~~--------l~~L~~L~L~~c~~l~~lp~--l~~l 53 (463)
+++|+.|||+++. +. .++ ...+.+ +++|+.|+|.+ .++.++. +..+
T Consensus 48 l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~~I~-~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMANFVP-AYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTTEEC-TTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTC
T ss_pred hccCeEEecCcce-eEEecCccccccccccccccccccC-HHHhcccccccccccCCCcEEECCc--cccchhHHHhhcC
Confidence 6889999999955 33 222 234556 88888888887 6777776 7888
Q ss_pred CCccEEEeeccCCCccCcc-ccCCCCccEEee
Q 012450 54 GNIEKILLDGTAIEELPSS-IGCLSRLLELNL 84 (463)
Q Consensus 54 ~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l 84 (463)
++|+.|+++++.+..++.. +..+.++..+.+
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~ 155 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPL 155 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECT
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecC
Confidence 8899999988887766554 555555555543
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=8.6e-11 Score=104.31 Aligned_cols=125 Identities=25% Similarity=0.386 Sum_probs=84.1
Q ss_pred cEEeeecCCCCCCCCCCCCCCCccEEEeeccCCCccCcc-ccCCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEECC
Q 012450 34 VILNLSGCSKLKSLPEISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGS 111 (463)
Q Consensus 34 ~~L~L~~c~~l~~lp~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~ 111 (463)
+.+++++ ..++.+|. ...++|++|++++|.++.++.. +..+++|++|++++|. +..+| ..+..+++|+.|++++|
T Consensus 10 ~~l~~~~-~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNS-KGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCS-SCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecC-CCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCC
Confidence 4566655 34555654 2235677777777777766654 4667777777777754 44444 33567778888888888
Q ss_pred CCccCCcc-CCCCCCccEEecCCCCCCCcCccc-CCCCCCccEEEeeCCCCCC
Q 012450 112 AIEELPSP-IECLSALCVLDLGDCKSLKSLKLP-FDGLYSLTYLYLTDCAITE 162 (463)
Q Consensus 112 ~i~~lp~~-i~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~L~~~~l~~ 162 (463)
.++.+|.. +..+++|++|++++|. ++.+|.. +..+++|+.|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence 77777654 5677888888888775 4455543 4678888888888887765
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=4.2e-14 Score=128.42 Aligned_cols=128 Identities=23% Similarity=0.265 Sum_probs=68.7
Q ss_pred CCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCccCCCCCCccEE
Q 012450 50 ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSPIECLSALCVL 129 (463)
Q Consensus 50 l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 129 (463)
+..+++|++|++++|.++.+| .+..+++|++|++++|. +..+|..+..+++|+.|++++|.++.+| .+..+++|++|
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 444555555555555555554 45555555555555542 3344444444455555555555555544 34455555555
Q ss_pred ecCCCCCCCcCcc--cCCCCCCccEEEeeCCCCCCc-cc----------ccCCcccccccccccccc
Q 012450 130 DLGDCKSLKSLKL--PFDGLYSLTYLYLTDCAITEL-PE----------SLGLLSSLEELYLERNNF 183 (463)
Q Consensus 130 ~l~~c~~l~~l~~--~l~~l~~L~~L~L~~~~l~~~-p~----------~l~~l~~L~~L~Ls~n~l 183 (463)
++++|. ++.++. .+..+++|+.|++++|.+.+. |. .+..+++|+.|+ ++.+
T Consensus 121 ~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 121 YMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp EESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred ECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 555554 333322 355666677777777766542 21 256677777776 4444
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=1.8e-10 Score=102.31 Aligned_cols=102 Identities=26% Similarity=0.404 Sum_probs=53.5
Q ss_pred cEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCCCCcCccc-CCCCCCccEEEeeC
Q 012450 80 LELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKLP-FDGLYSLTYLYLTD 157 (463)
Q Consensus 80 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~L~~ 157 (463)
+.++++++ .++.+|..+. ++|+.|++++|.++.+ |..+..+++|++|++++|. ++.+|.. +.++++|+.|+|++
T Consensus 15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCC
Confidence 45555553 3455555442 5566666666666555 3345555555555555553 3334332 34555555555555
Q ss_pred CCCCCcccc-cCCcccccccccccccccc
Q 012450 158 CAITELPES-LGLLSSLEELYLERNNFER 185 (463)
Q Consensus 158 ~~l~~~p~~-l~~l~~L~~L~Ls~n~l~~ 185 (463)
|.+..+|.. +..+++|+.|+|++|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 555554433 4455555555555555443
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=2.2e-10 Score=101.70 Aligned_cols=106 Identities=25% Similarity=0.329 Sum_probs=70.5
Q ss_pred cEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCCC
Q 012450 57 EKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDCK 135 (463)
Q Consensus 57 ~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~ 135 (463)
+.++++++.++++|..+. ++|++|++++|......|..+.++++|+.|++++|.++.+|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666666666666543 6677777776543333355666777777777777777777655 3677777777777765
Q ss_pred CCCcCccc-CCCCCCccEEEeeCCCCCCccc
Q 012450 136 SLKSLKLP-FDGLYSLTYLYLTDCAITELPE 165 (463)
Q Consensus 136 ~l~~l~~~-l~~l~~L~~L~L~~~~l~~~p~ 165 (463)
++.+|.. +..+++|+.|+|++|.+...+.
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred -cceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 4455543 6777888888888887765543
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.11 E-value=3.1e-11 Score=118.34 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=52.4
Q ss_pred CCCccEEEeeCCCCCCccc-ccCCcccccccccccccccccc-hhhhCCCCcc-EeccccccccccCCCC----CCCccE
Q 012450 147 LYSLTYLYLTDCAITELPE-SLGLLSSLEELYLERNNFERIP-ESIIRLSKLS-SLLVSYCERLQSLPKL----PCNLYW 219 (463)
Q Consensus 147 l~~L~~L~L~~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~-~L~L~~c~~l~~l~~l----~~~L~~ 219 (463)
+++|+.|+|++|+++.+|. .+.++++|++|++.+| ++.++ ..+.++++|+ .+++.+ .++.|+.- ..+|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCE
Confidence 6788888888888888664 4678888888888887 76666 4567788888 888876 46665531 234555
Q ss_pred eec
Q 012450 220 LDA 222 (463)
Q Consensus 220 L~i 222 (463)
+++
T Consensus 302 l~l 304 (329)
T 3sb4_A 302 VLA 304 (329)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=1.9e-10 Score=101.60 Aligned_cols=102 Identities=26% Similarity=0.421 Sum_probs=58.0
Q ss_pred ccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccC-CccCCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEee
Q 012450 79 LLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEEL-PSPIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLT 156 (463)
Q Consensus 79 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~ 156 (463)
.+.++++++ .++.+|..+ .++|+.|++++|.++.+ |..+..+++|++|++++|. ++.++. .+.++++|+.|+|+
T Consensus 11 ~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 456666663 455566544 25666666666666655 3345566666666666654 333333 24556666666666
Q ss_pred CCCCCCccc-ccCCccccccccccccccc
Q 012450 157 DCAITELPE-SLGLLSSLEELYLERNNFE 184 (463)
Q Consensus 157 ~~~l~~~p~-~l~~l~~L~~L~Ls~n~l~ 184 (463)
+|.++.+|. .+..+++|+.|+|++|.++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 666665544 3555666666666666543
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=6.7e-10 Score=98.06 Aligned_cols=105 Identities=27% Similarity=0.339 Sum_probs=68.7
Q ss_pred ccEEEeeccCCCccCccccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCccCCcc-CCCCCCccEEecCCC
Q 012450 56 IEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELPSP-IECLSALCVLDLGDC 134 (463)
Q Consensus 56 L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c 134 (463)
.+.++++++.++++|..+. ++|++|++++|......|..+.++++|+.|++++|.++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3566666666666666542 6677777776543333355566777777777777777766654 367777777777776
Q ss_pred CCCCcCcc-cCCCCCCccEEEeeCCCCCCc
Q 012450 135 KSLKSLKL-PFDGLYSLTYLYLTDCAITEL 163 (463)
Q Consensus 135 ~~l~~l~~-~l~~l~~L~~L~L~~~~l~~~ 163 (463)
. ++.++. .+..+++|+.|+|++|.+...
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred c-cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 5 444443 467778888888888876643
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.93 E-value=1.9e-08 Score=101.19 Aligned_cols=206 Identities=13% Similarity=0.123 Sum_probs=132.0
Q ss_pred CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeeccCCCccCccccCCCCccEEe
Q 012450 6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELN 83 (463)
Q Consensus 6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 83 (463)
+|+.+.|.. .++.+. ...+.++ +|+.+.+.. .++.++. +..+++|+.+++.+|.++.++.....+.+|+.+.
T Consensus 136 ~L~~i~l~~--~i~~I~-~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNE--GLKSIG-DMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVL 209 (401)
T ss_dssp CCSEEECCT--TCCEEC-TTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEE
T ss_pred CccEEEeCC--CccEEC-HHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEE
Confidence 566666654 255553 2344443 577777764 5666665 7777888888888888887777655567788888
Q ss_pred eecCCCCCccc-hhcCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCc-ccCCCCCCccEEEeeCCCCC
Q 012450 84 LGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLK-LPFDGLYSLTYLYLTDCAIT 161 (463)
Q Consensus 84 l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~L~~~~l~ 161 (463)
+.+ .++.++ ..+.++++|+.+.+..+ ++.++.....-.+|+.+.+.+ .++.++ ..+.++++|+.+.+.++.+.
T Consensus 210 lp~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 210 LPV--TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp CCT--TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred eCC--chheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCcccc
Confidence 764 355554 34667788888888763 555554433336788887743 244443 34777888888888877654
Q ss_pred -----Cc-ccccCCcccccccccccccccccc-hhhhCCCCccEeccccccccccCCCC---CCCccEeeccCc
Q 012450 162 -----EL-PESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYCERLQSLPKL---PCNLYWLDAQHC 225 (463)
Q Consensus 162 -----~~-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~~l---~~~L~~L~i~~c 225 (463)
.+ +..+..|++|+.+.+.+ .++.++ ..+.+|++|+.+.|..+ ++.|+.- -.+|+.+++.+.
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~~L~~l~l~~n 355 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNTGIKEVKVEGT 355 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSSCCCEEEECCS
T ss_pred CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCCCCCEEEEcCC
Confidence 23 34567788888888874 466665 35667788888888553 5554431 125666666553
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.83 E-value=1e-08 Score=100.83 Aligned_cols=82 Identities=18% Similarity=0.230 Sum_probs=36.6
Q ss_pred eeecCCCCCCCCCCCCCCCccEEEeec-cCCCccCc-cccCCCCccEEeeecCCCCCccchhcCCCCCCcEEEEECCCCc
Q 012450 37 NLSGCSKLKSLPEISSAGNIEKILLDG-TAIEELPS-SIGCLSRLLELNLGDCKNLKTLPSSLCKLKSLEEICLTGSAIE 114 (463)
Q Consensus 37 ~L~~c~~l~~lp~l~~l~~L~~L~L~~-~~i~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~ 114 (463)
++++++.++.+|.+..+++|++|+|++ |.|+.++. .+..+++|+.|+|++|......|..|.++++|+.|+|++|.++
T Consensus 14 ~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred EcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 444422444444444444455555543 45544442 2444555555555544322222233444555555555555444
Q ss_pred cCCc
Q 012450 115 ELPS 118 (463)
Q Consensus 115 ~lp~ 118 (463)
.+|.
T Consensus 94 ~~~~ 97 (347)
T 2ifg_A 94 SLSW 97 (347)
T ss_dssp CCCS
T ss_pred eeCH
Confidence 4443
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.83 E-value=6.9e-09 Score=102.10 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=59.3
Q ss_pred EEEeecc-CCCccCccccCCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEECCCCccCCc-cCCCCCCccEEecCCC
Q 012450 58 KILLDGT-AIEELPSSIGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTGSAIEELPS-PIECLSALCVLDLGDC 134 (463)
Q Consensus 58 ~L~L~~~-~i~~lp~~i~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c 134 (463)
.++++++ .++.+|. +..+++|+.|+|++++.+..+| ..+.++++|+.|+|++|.++.+++ .+..+++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566665 6777777 7777777777776533455554 456667777777777776665543 3455666666666655
Q ss_pred CCCCcCcccCCCCCCccEEEeeCCCCC
Q 012450 135 KSLKSLKLPFDGLYSLTYLYLTDCAIT 161 (463)
Q Consensus 135 ~~l~~l~~~l~~l~~L~~L~L~~~~l~ 161 (463)
. ++.+|........|+.|+|.+|.+.
T Consensus 91 ~-l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 A-LESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp C-CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred c-cceeCHHHcccCCceEEEeeCCCcc
Confidence 4 3444432222222555555555544
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.82 E-value=7.3e-08 Score=96.95 Aligned_cols=188 Identities=16% Similarity=0.203 Sum_probs=142.4
Q ss_pred CcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC-CCCCCCccEEEeeccCCCccCcc-ccCCCCccEEe
Q 012450 6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE-ISSAGNIEKILLDGTAIEELPSS-IGCLSRLLELN 83 (463)
Q Consensus 6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~-l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~ 83 (463)
+|+.+.|.. .++.+. ...+.+|++|+.+++.+ +.++.++. .....+|+.+.+..+ ++.++.. +..+++|+.+.
T Consensus 158 ~L~~i~lp~--~l~~I~-~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLK-EDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT--TCCEEC-SSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC--CccEeh-HHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence 688888875 566664 46788999999999987 46788887 333689999999854 7777654 78899999999
Q ss_pred eecCCCCCccchhcCCCCCCcEEEEECCCCccCC-ccCCCCCCccEEecCCCCCC----CcC-cccCCCCCCccEEEeeC
Q 012450 84 LGDCKNLKTLPSSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSL----KSL-KLPFDGLYSLTYLYLTD 157 (463)
Q Consensus 84 l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l----~~l-~~~l~~l~~L~~L~L~~ 157 (463)
+.+ +++.++.....-.+|+.+.+. +.++.++ ..+..+++|+.+.+.++... ..+ +..+.++++|+.+.+.+
T Consensus 233 l~~--~l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 233 IPE--NVSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CCT--TCCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred cCC--CccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 986 366776543333789999995 4566664 46788999999999876432 122 34588999999999984
Q ss_pred CCCCCcc-cccCCcccccccccccccccccc-hhhhCCCCccEeccccc
Q 012450 158 CAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVSYC 204 (463)
Q Consensus 158 ~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c 204 (463)
.+..++ ..+.+|++|+.+.|..+ ++.+. ..+.++ +|+.+.+.++
T Consensus 310 -~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 310 -SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp -TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred -ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 466654 45778999999999654 66665 467778 9999999987
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.81 E-value=2e-10 Score=114.64 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=90.8
Q ss_pred CCCccEEEeeccCCCcc-----Ccccc-CCCCccEEeeecCCCCCccchh-cCCCCCCcEEEEECCCCccC-----CccC
Q 012450 53 AGNIEKILLDGTAIEEL-----PSSIG-CLSRLLELNLGDCKNLKTLPSS-LCKLKSLEEICLTGSAIEEL-----PSPI 120 (463)
Q Consensus 53 l~~L~~L~L~~~~i~~l-----p~~i~-~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~l-----p~~i 120 (463)
+++|+.|++++|.++.. ...+. ..++|+.|++++|.....-... ...+++|+.|++++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45677777777776632 22222 2357777777776432211111 22345677777777776522 1112
Q ss_pred -CCCCCccEEecCCCCCCCc-----CcccCCCCCCccEEEeeCCCCCC-----cccccCCccccccccccccccc-----
Q 012450 121 -ECLSALCVLDLGDCKSLKS-----LKLPFDGLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNFE----- 184 (463)
Q Consensus 121 -~~l~~L~~L~l~~c~~l~~-----l~~~l~~l~~L~~L~L~~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~----- 184 (463)
...++|++|++++|. ++. ++..+...++|++|+|++|.+.+ ++..+...++|++|+|++|.++
T Consensus 151 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 245677777777775 322 33334566778888888887765 3455666677888888888775
Q ss_pred ccchhhhCCCCccEecccccc
Q 012450 185 RIPESIIRLSKLSSLLVSYCE 205 (463)
Q Consensus 185 ~lp~~l~~l~~L~~L~L~~c~ 205 (463)
.+...+...++|+.|+|++|.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHhCCCCCEEeccCCC
Confidence 244555667778888888774
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.80 E-value=9.1e-11 Score=117.09 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=111.1
Q ss_pred CcCccEEeeecCCCCCCCC-----C-CC-CCCCccEEEeeccCCCc--cCccccCCCCccEEeeecCCCCCcc----chh
Q 012450 30 LNKLVILNLSGCSKLKSLP-----E-IS-SAGNIEKILLDGTAIEE--LPSSIGCLSRLLELNLGDCKNLKTL----PSS 96 (463)
Q Consensus 30 l~~L~~L~L~~c~~l~~lp-----~-l~-~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~c~~l~~l----p~~ 96 (463)
+++|+.|+|++|. ++... . +. ..++|++|+|++|.++. +......+++|+.|++++|.....- ...
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4678999999875 43321 1 22 34799999999998873 2222344678999999998543222 222
Q ss_pred c-CCCCCCcEEEEECCCCcc-----CCccCCCCCCccEEecCCCCCCCc-----CcccCCCCCCccEEEeeCCCCCC---
Q 012450 97 L-CKLKSLEEICLTGSAIEE-----LPSPIECLSALCVLDLGDCKSLKS-----LKLPFDGLYSLTYLYLTDCAITE--- 162 (463)
Q Consensus 97 l-~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~l~~-----l~~~l~~l~~L~~L~L~~~~l~~--- 162 (463)
+ ...++|++|++++|.++. ++..+..+++|++|++++|. ++. +...+...++|+.|+|++|.+++
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 3 357889999999999863 45556778899999999987 433 23345677899999999999986
Q ss_pred --cccccCCcccccccccccccccc
Q 012450 163 --LPESLGLLSSLEELYLERNNFER 185 (463)
Q Consensus 163 --~p~~l~~l~~L~~L~Ls~n~l~~ 185 (463)
+...+...++|++|+|++|.++.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCH
Confidence 44556677899999999999863
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=6e-09 Score=103.30 Aligned_cols=59 Identities=15% Similarity=0.295 Sum_probs=35.8
Q ss_pred CCCCccEEEeeCCCCCC-ccccc---CCcccccccccccccccc-----cchhhhCCCCccEeccccc
Q 012450 146 GLYSLTYLYLTDCAITE-LPESL---GLLSSLEELYLERNNFER-----IPESIIRLSKLSSLLVSYC 204 (463)
Q Consensus 146 ~l~~L~~L~L~~~~l~~-~p~~l---~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~c 204 (463)
.+++|+.|+|.+|.+.+ .+..+ ..+++|++|+|+.|.++. ++..+..+++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 45677777777776653 11111 346677777777776642 3344455677777777776
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.61 E-value=2.4e-08 Score=98.99 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=18.5
Q ss_pred CCCccEEEeeCCCCCC-----cccccCCcccccccccccccc
Q 012450 147 LYSLTYLYLTDCAITE-----LPESLGLLSSLEELYLERNNF 183 (463)
Q Consensus 147 l~~L~~L~L~~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l 183 (463)
+++|+.|+|+.|.+.+ ++..+..+++|+.|+|++|.+
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 4555555555555543 222333445555555555544
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.19 E-value=1e-05 Score=80.77 Aligned_cols=102 Identities=23% Similarity=0.158 Sum_probs=52.8
Q ss_pred cCCCCCCcEEEEECCCCccCCccCCCCCCccEEecCCCCCCCcCcccCCCCCCccEEEeeCCCCCCcc-cccCCcccccc
Q 012450 97 LCKLKSLEEICLTGSAIEELPSPIECLSALCVLDLGDCKSLKSLKLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEE 175 (463)
Q Consensus 97 l~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~L~~~~l~~~p-~~l~~l~~L~~ 175 (463)
+..+.+|+.+.+..+...--...+..+..|+.+...... .....+..+.+|+.+.+..+ +..+. ..+.++.+|+.
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCE
Confidence 344555555555443322222334444555555443321 11123556667777777543 44432 34566777777
Q ss_pred cccccccccccc-hhhhCCCCccEecccc
Q 012450 176 LYLERNNFERIP-ESIIRLSKLSSLLVSY 203 (463)
Q Consensus 176 L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~ 203 (463)
++|..+ ++.+. ..+.+|.+|+.+.+..
T Consensus 325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 325 IDLPYL-VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp ECCCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred EEeCCc-ccEEhHHhccCCCCCCEEEECc
Confidence 777543 55554 3556677777776654
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.12 E-value=5e-07 Score=80.66 Aligned_cols=59 Identities=20% Similarity=0.176 Sum_probs=34.9
Q ss_pred CCCCccEEEeeCCCCCC-----cccccCCccccccccc--cccccc-----ccchhhhCCCCccEeccccc
Q 012450 146 GLYSLTYLYLTDCAITE-----LPESLGLLSSLEELYL--ERNNFE-----RIPESIIRLSKLSSLLVSYC 204 (463)
Q Consensus 146 ~l~~L~~L~L~~~~l~~-----~p~~l~~l~~L~~L~L--s~n~l~-----~lp~~l~~l~~L~~L~L~~c 204 (463)
..++|++|+|++|.+.+ +...+...++|++|+| ++|.++ .+...+...+.|++|++++|
T Consensus 91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 34556666666666654 3445555666777777 566654 23445555566666666655
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=1.2e-06 Score=77.20 Aligned_cols=81 Identities=20% Similarity=0.307 Sum_probs=44.6
Q ss_pred cCccEEeeecCCCCCCCC--CCCCCCCccEEEeecc-CCCc-cCccccCC----CCccEEeeecCCCCCccc-hhcCCCC
Q 012450 31 NKLVILNLSGCSKLKSLP--EISSAGNIEKILLDGT-AIEE-LPSSIGCL----SRLLELNLGDCKNLKTLP-SSLCKLK 101 (463)
Q Consensus 31 ~~L~~L~L~~c~~l~~lp--~l~~l~~L~~L~L~~~-~i~~-lp~~i~~l----~~L~~L~l~~c~~l~~lp-~~l~~l~ 101 (463)
.+|+.||+++|. ++... .+..+++|++|+|++| .|+. --..+..+ ++|++|++++|..++.-. ..+.+++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 356666666664 43322 2556666666666666 3541 11113332 357777777776655421 2345667
Q ss_pred CCcEEEEECCC
Q 012450 102 SLEEICLTGSA 112 (463)
Q Consensus 102 ~L~~L~l~~~~ 112 (463)
+|+.|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777763
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=9.8e-07 Score=78.72 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=64.2
Q ss_pred ccCCCCccEEeeecCCCCC-----ccchhcCCCCCCcEEEEECCCCcc-----CCccCCCCCCccEEecCCCCCCCc---
Q 012450 73 IGCLSRLLELNLGDCKNLK-----TLPSSLCKLKSLEEICLTGSAIEE-----LPSPIECLSALCVLDLGDCKSLKS--- 139 (463)
Q Consensus 73 i~~l~~L~~L~l~~c~~l~-----~lp~~l~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~l~~--- 139 (463)
+...++|++|++++|..+. .+...+...++|++|+|++|.+.. +...+...++|++|++++|. ++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHH
Confidence 3445556666665552222 133444555566666666665541 22333444566666666665 222
Q ss_pred --CcccCCCCCCccEEEe--eCCCCCC-----cccccCCccccccccccccccc
Q 012450 140 --LKLPFDGLYSLTYLYL--TDCAITE-----LPESLGLLSSLEELYLERNNFE 184 (463)
Q Consensus 140 --l~~~l~~l~~L~~L~L--~~~~l~~-----~p~~l~~l~~L~~L~Ls~n~l~ 184 (463)
+...+...++|+.|+| ++|.+.+ +...+...++|++|+|++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334555667888888 7777765 4445566678888888888764
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=5.4e-06 Score=72.88 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=17.0
Q ss_pred ccccccccccc-cc--ccchhhhCCCCccEeccccccccc
Q 012450 172 SLEELYLERNN-FE--RIPESIIRLSKLSSLLVSYCERLQ 208 (463)
Q Consensus 172 ~L~~L~Ls~n~-l~--~lp~~l~~l~~L~~L~L~~c~~l~ 208 (463)
+|++|+|++|. ++ .+ ..+.++++|++|+|++|+.++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCCCCC
Confidence 45555555542 33 12 133445555555555555444
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.93 E-value=9.3e-05 Score=73.82 Aligned_cols=56 Identities=21% Similarity=0.292 Sum_probs=34.4
Q ss_pred CCCCCcceeecccccCcCCCCCcccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEee
Q 012450 2 QHHGKLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLD 62 (463)
Q Consensus 2 ~~~~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~ 62 (463)
.+|.+|+++.|.. .++.+. ...+.++.+|+.+++.. .++.++. +..+.+|+.+.+.
T Consensus 68 ~~c~~L~~i~lp~--~i~~I~-~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 68 QGCRKVTEIKIPS--TVREIG-EFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TTCTTEEEEECCT--TCCEEC-TTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred hCCCCceEEEeCC--CccCcc-hhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhccc
Confidence 4577777777763 355553 34577778888888764 2555544 5556666555443
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.92 E-value=0.00026 Score=70.57 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=43.0
Q ss_pred CcceeecccccCcCCCCCcccccCCcCccEEeeecC--CCCCCCCC--CCCCCCccEEEeeccCCCccCcc-ccCCCCcc
Q 012450 6 KLNQIIMAACNIFTKTPNPSLIQHLNKLVILNLSGC--SKLKSLPE--ISSAGNIEKILLDGTAIEELPSS-IGCLSRLL 80 (463)
Q Consensus 6 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~L~~c--~~l~~lp~--l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~ 80 (463)
.|+.+.+-. .++.+. ...+.++.+|+.+.+..+ ..++.++. +..+.+|+.+.+..+ ++.++.. +..+.+|+
T Consensus 65 ~L~sI~iP~--svt~Ig-~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPD--TVTEIG-SNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEECT--TCCEEC-TTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCC
T ss_pred cCEEEEECC--CeeEEh-HHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccc
Confidence 477777764 355554 456777888888887653 23555544 555666665554432 3333322 44555566
Q ss_pred EEeee
Q 012450 81 ELNLG 85 (463)
Q Consensus 81 ~L~l~ 85 (463)
.+.+.
T Consensus 141 ~i~lp 145 (394)
T 4gt6_A 141 TVTIP 145 (394)
T ss_dssp EEECC
T ss_pred ccccc
Confidence 55554
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.84 E-value=0.00034 Score=69.69 Aligned_cols=86 Identities=17% Similarity=0.269 Sum_probs=51.7
Q ss_pred CCCCCCccEEecCCCCCCCcC-cccCCCCCCccEEEeeCCCCCCcc-cccCCcccccccccccccccccc-hhhhCCCCc
Q 012450 120 IECLSALCVLDLGDCKSLKSL-KLPFDGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKL 196 (463)
Q Consensus 120 i~~l~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~L~~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L 196 (463)
+..+.+|+.+.+.+.. ..+ ...+.++++|+.+.+. ..+..++ ..+.+|.+|+.+.|..+ ++.+. ..+.+|.+|
T Consensus 261 F~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccEEeccccc--ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 3455666666664321 122 2235677888888875 3455544 34667888888888654 55554 356778888
Q ss_pred cEeccccccccccCC
Q 012450 197 SSLLVSYCERLQSLP 211 (463)
Q Consensus 197 ~~L~L~~c~~l~~l~ 211 (463)
+.+.|... ++.|+
T Consensus 337 ~~i~ip~s--v~~I~ 349 (394)
T 4gt6_A 337 ERIAIPSS--VTKIP 349 (394)
T ss_dssp CEEEECTT--CCBCC
T ss_pred CEEEECcc--cCEEh
Confidence 88877532 44444
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.39 E-value=0.0082 Score=59.04 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=28.8
Q ss_pred CCCCCccEEEeeCCCCCCcc-cccCCcccccccccccccccccc-hhhhCCCCccEeccc
Q 012450 145 DGLYSLTYLYLTDCAITELP-ESLGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVS 202 (463)
Q Consensus 145 ~~l~~L~~L~L~~~~l~~~p-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~ 202 (463)
.++.+|+.+.+... +..++ ..+..+++|+.+.+.++.++.++ ..+.+|.+|+.+.|.
T Consensus 260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 34445555555332 22222 23455666666666666555554 344556666666553
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.37 E-value=0.00011 Score=69.15 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=24.0
Q ss_pred CCCccEEEeeCCCCCCcc---cccCCcccccccccccccccccchhhhCCC--CccEecccccc
Q 012450 147 LYSLTYLYLTDCAITELP---ESLGLLSSLEELYLERNNFERIPESIIRLS--KLSSLLVSYCE 205 (463)
Q Consensus 147 l~~L~~L~L~~~~l~~~p---~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~L~~c~ 205 (463)
+++|+.|+|++|.+..++ ..+..+++|+.|+|++|+++.+. .+..+. +|+.|+|++|+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCc
Confidence 344444444444444321 22334444444444444444331 122222 44445554444
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.36 E-value=7e-05 Score=70.54 Aligned_cols=78 Identities=27% Similarity=0.284 Sum_probs=47.7
Q ss_pred CCCCccEEEeeccCCCccC---ccccCCCCccEEeeecCCCCCccchhcCCCC--CCcEEEEECCCCcc-CCc-------
Q 012450 52 SAGNIEKILLDGTAIEELP---SSIGCLSRLLELNLGDCKNLKTLPSSLCKLK--SLEEICLTGSAIEE-LPS------- 118 (463)
Q Consensus 52 ~l~~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~--~L~~L~l~~~~i~~-lp~------- 118 (463)
.+++|+.|+|++|.|+.++ ..+..+++|+.|+|++|. +..+. .+..+. +|++|++++|.+.. +|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4667777777777766443 445567777777777754 33332 233333 77788888877763 331
Q ss_pred cCCCCCCccEEec
Q 012450 119 PIECLSALCVLDL 131 (463)
Q Consensus 119 ~i~~l~~L~~L~l 131 (463)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 2456777777763
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.63 E-value=0.025 Score=55.46 Aligned_cols=173 Identities=16% Similarity=0.162 Sum_probs=111.4
Q ss_pred cccccCCcCccEEeeecCCCCCCC------------CC-CCCCCCccEEEeeccCCCccCccccCCCCccEEeeecCCCC
Q 012450 24 PSLIQHLNKLVILNLSGCSKLKSL------------PE-ISSAGNIEKILLDGTAIEELPSSIGCLSRLLELNLGDCKNL 90 (463)
Q Consensus 24 ~~~~~~l~~L~~L~L~~c~~l~~l------------p~-l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~l~~c~~l 90 (463)
...+..+.+|+.+.+......... .. +.....+..+.+...........+..+.+|+.+.+.. .+
T Consensus 151 ~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~--~~ 228 (379)
T 4h09_A 151 DGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITS--GV 228 (379)
T ss_dssp SCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCT--TC
T ss_pred cchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeecccccccccceeeecc--ce
Confidence 346777888888887754322110 11 3344555555555432222233456677888888865 24
Q ss_pred Cccc-hhcCCCCCCcEEEEECCCCccCC-ccCCCCCCccEEecCCCCCCCcCcc-cCCCCCCccEEEeeCCCCCCcc-cc
Q 012450 91 KTLP-SSLCKLKSLEEICLTGSAIEELP-SPIECLSALCVLDLGDCKSLKSLKL-PFDGLYSLTYLYLTDCAITELP-ES 166 (463)
Q Consensus 91 ~~lp-~~l~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~L~~~~l~~~p-~~ 166 (463)
..++ ..+.++.+|+.+.+..+ ++.+. ..+..+.+|+.+.+... ++.++. .+.++++|+.+.+.++.++.++ ..
T Consensus 229 ~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a 305 (379)
T 4h09_A 229 TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV 305 (379)
T ss_dssp CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTT
T ss_pred eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhh
Confidence 4443 34667888999888765 55553 34667888888888642 444443 4778899999999888888754 45
Q ss_pred cCCcccccccccccccccccc-hhhhCCCCccEeccc
Q 012450 167 LGLLSSLEELYLERNNFERIP-ESIIRLSKLSSLLVS 202 (463)
Q Consensus 167 l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~ 202 (463)
+.+|.+|+.+.|..+ ++.+. ..+.+|.+|+.+.+.
T Consensus 306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 778999999998654 55554 356677777777654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.87 E-value=0.0023 Score=57.06 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=6.7
Q ss_pred hhhCCCCccEecccc
Q 012450 189 SIIRLSKLSSLLVSY 203 (463)
Q Consensus 189 ~l~~l~~L~~L~L~~ 203 (463)
.+..-+.|+.|+|++
T Consensus 121 aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 121 STLVTQSIVEFKADN 135 (197)
T ss_dssp HTTTTCCCSEEECCC
T ss_pred HHhhCCceeEEECCC
Confidence 333344455555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.37 E-value=0.0064 Score=54.20 Aligned_cols=84 Identities=15% Similarity=0.095 Sum_probs=49.5
Q ss_pred cCCCCCCcEEEEECC-CCc-----cCCccCCCCCCccEEecCCCCCCCc-----CcccCCCCCCccEEEeeCCCCCC---
Q 012450 97 LCKLKSLEEICLTGS-AIE-----ELPSPIECLSALCVLDLGDCKSLKS-----LKLPFDGLYSLTYLYLTDCAITE--- 162 (463)
Q Consensus 97 l~~l~~L~~L~l~~~-~i~-----~lp~~i~~l~~L~~L~l~~c~~l~~-----l~~~l~~l~~L~~L~L~~~~l~~--- 162 (463)
+.+-+.|++|+|+++ .|. .+-..+..-+.|+.|+|++|. +.+ +...+..-++|+.|+|++|.+.+
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 445567777777764 554 233344455677777777765 222 22223344667777777777764
Q ss_pred --cccccCCcccccccccccc
Q 012450 163 --LPESLGLLSSLEELYLERN 181 (463)
Q Consensus 163 --~p~~l~~l~~L~~L~Ls~n 181 (463)
+-..+..-+.|++|+|++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 3344555566777777654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.06 E-value=0.02 Score=47.36 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=23.1
Q ss_pred EEEeeCCCCC--CcccccCCcccccccccccccccccch-hhhCCCCccEeccccc
Q 012450 152 YLYLTDCAIT--ELPESLGLLSSLEELYLERNNFERIPE-SIIRLSKLSSLLVSYC 204 (463)
Q Consensus 152 ~L~L~~~~l~--~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c 204 (463)
.++.++.+++ .+|..+ .++|+.|+|++|+++.+|. .+..+++|+.|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3444444444 444321 2245555555555554443 2344455555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.07 E-value=0.13 Score=42.38 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=12.5
Q ss_pred CcEEEEECCCCccCCcc-CCCCCCccEEecCCC
Q 012450 103 LEEICLTGSAIEELPSP-IECLSALCVLDLGDC 134 (463)
Q Consensus 103 L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c 134 (463)
|+.|+|++|.|+.+|.. +..+++|+.|+|++|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 33344444444433322 233344444444443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.58 E-value=73 Score=24.20 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=21.4
Q ss_pred ccccCCcCccEEeeecCCCCCCCCC--CCCCCCccEEEeec
Q 012450 25 SLIQHLNKLVILNLSGCSKLKSLPE--ISSAGNIEKILLDG 63 (463)
Q Consensus 25 ~~~~~l~~L~~L~L~~c~~l~~lp~--l~~l~~L~~L~L~~ 63 (463)
..|.++.+|+.+.|-. .++.+.. +..+.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 4556666666666654 3455544 55566666666654
No 166
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=26.46 E-value=24 Score=19.37 Aligned_cols=14 Identities=43% Similarity=0.520 Sum_probs=10.0
Q ss_pred ccccccCCCccccC
Q 012450 448 NRKEVEEPHPKRLK 461 (463)
Q Consensus 448 ~~~~~~~~~~~~~~ 461 (463)
+=||+|||-.||-+
T Consensus 13 ewdedeepprkrkr 26 (28)
T 3ukw_C 13 EWDEDEEPPRKRKR 26 (28)
T ss_dssp CCCGGGSCCSSCCC
T ss_pred ccccccCcchhhhc
Confidence 45778888877744
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.08 E-value=1e+02 Score=23.32 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=18.2
Q ss_pred ccCCCCccEEeeecCCCCCccc-hhcCCCCCCcEEEEEC
Q 012450 73 IGCLSRLLELNLGDCKNLKTLP-SSLCKLKSLEEICLTG 110 (463)
Q Consensus 73 i~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 110 (463)
+..|++|+.+.|-. .++.+. ..+.++.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 45555566555553 233332 2355555666555544
Done!