BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012451
         (463 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YYO|A Chain A, Crystal Sturcture Of Human Spry Domain
          Length = 171

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 81/151 (53%), Gaps = 10/151 (6%)

Query: 66  VKYTSVNLHGH--DVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQ 123
           V   +++ HG+  +VG   A++P  + +   YFE+ + D+G +G IA+G   + + +  Q
Sbjct: 13  VDGDTLSYHGNSGEVGCYVASRP--LTKDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDHQ 70

Query: 124 PGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYAS-----QEFFFTKNGS 178
           PGW  +S  YH DDG LY G+ KG  FG    + D +G GI   S      + FFTKNG 
Sbjct: 71  PGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGK 130

Query: 179 LVGA-VYKDIKGPLFPTIAVHSQNEEVLVNF 208
            VG+ +       LFP +  HS  EEV ++ 
Sbjct: 131 RVGSTIXPXSPDGLFPAVGXHSLGEEVRLHL 161


>pdb|3TOJ|A Chain A, Structure Of The Spry Domain Of Human Ash2l
 pdb|3TOJ|B Chain B, Structure Of The Spry Domain Of Human Ash2l
          Length = 213

 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 11/130 (8%)

Query: 89  VKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGE 148
           V++  +YFEI V +        +G++     ++   G++  S  +    G  +  Q  G+
Sbjct: 48  VRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFH-QSIGK 106

Query: 149 AFGPTFTTNDTVGGGINY--------ASQEFFFTKNGSLVGAVYKDI-KGPLFPTIAVHS 199
            +   +   D +G  IN          S E  F KNG   G  YKDI +G  FP I+++ 
Sbjct: 107 HYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKDIFEGVYFPAISLY- 165

Query: 200 QNEEVLVNFG 209
           ++  V +NFG
Sbjct: 166 KSCTVSINFG 175


>pdb|4GR8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
           In Complex With Selective Phosphinic Inhibitor Rxp470c
          Length = 152

 Score = 28.5 bits (62), Expect = 9.2,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 17/77 (22%)

Query: 132 GYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGS---LVGAVYK--- 185
           G HGDD   +   GKG      F     +GG  ++   EF+ T +G     + AV++   
Sbjct: 56  GAHGDD---HAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGH 112

Query: 186 --------DIKGPLFPT 194
                   D K  +FPT
Sbjct: 113 SLGLGHSSDPKAVMFPT 129


>pdb|2K9C|A Chain A, Paramagnetic Shifts In Solid-State Nmr Of Proteins To
           Elicit Structural Information
 pdb|2KRJ|A Chain A, High-Resolution Solid-State Nmr Structure Of A 17.6 Kda
           Prot
          Length = 152

 Score = 28.5 bits (62), Expect = 9.3,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 17/77 (22%)

Query: 132 GYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGS---LVGAVYK--- 185
           G HGDD   +   GKG      F     +GG  ++   EF+ T +G     + AV++   
Sbjct: 55  GAHGDD---HAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGH 111

Query: 186 --------DIKGPLFPT 194
                   D K  +FPT
Sbjct: 112 SLGLGHSSDPKAVMFPT 128


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,723,966
Number of Sequences: 62578
Number of extensions: 574368
Number of successful extensions: 1383
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1380
Number of HSP's gapped (non-prelim): 8
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)