Query 012451
Match_columns 463
No_of_seqs 299 out of 1620
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 02:47:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1477 SPRY domain-containing 100.0 9.8E-38 2.1E-42 323.2 8.7 416 35-456 22-468 (469)
2 KOG2659 LisH motif-containing 100.0 1.3E-34 2.8E-39 268.7 16.2 191 231-440 18-209 (228)
3 PF10607 CLTH: CTLH/CRA C-term 99.9 6.2E-26 1.3E-30 202.4 12.5 139 290-437 2-143 (145)
4 KOG0349 Putative DEAD-box RNA 99.9 7.4E-26 1.6E-30 224.1 11.3 172 39-225 83-259 (725)
5 PF00622 SPRY: SPRY domain; I 99.9 1.2E-23 2.6E-28 181.7 15.0 117 91-212 1-124 (124)
6 KOG2626 Histone H3 (Lys4) meth 99.9 4.6E-24 1E-28 216.5 12.4 157 52-219 299-501 (544)
7 smart00449 SPRY Domain in SPla 99.9 6.9E-23 1.5E-27 176.9 14.8 115 91-210 1-121 (122)
8 KOG0396 Uncharacterized conser 99.8 1.2E-20 2.5E-25 184.3 13.9 168 240-429 116-284 (389)
9 KOG3953 SOCS box protein SSB-1 99.8 3.8E-18 8.3E-23 157.4 14.9 199 45-248 27-236 (242)
10 KOG2817 Predicted E3 ubiquitin 99.7 5.3E-16 1.2E-20 153.7 13.6 168 242-429 119-290 (394)
11 KOG4030 Uncharacterized conser 99.6 4.3E-15 9.3E-20 128.4 13.6 157 43-220 27-187 (197)
12 KOG4367 Predicted Zn-finger pr 99.5 5.6E-14 1.2E-18 139.3 13.4 158 45-210 532-694 (699)
13 KOG2243 Ca2+ release channel ( 99.5 2.6E-14 5.7E-19 154.3 10.7 128 77-210 1091-1226(5019)
14 smart00757 CRA CT11-RanBPM. pr 99.5 8.6E-14 1.9E-18 115.7 10.1 93 344-442 2-97 (99)
15 KOG0293 WD40 repeat-containing 99.4 3.6E-13 7.9E-18 133.3 10.5 170 238-438 16-189 (519)
16 KOG1477 SPRY domain-containing 99.4 3E-14 6.6E-19 148.5 -1.7 195 131-340 1-199 (469)
17 smart00668 CTLH C-terminal to 99.1 4.4E-11 9.5E-16 89.4 4.5 55 290-345 2-56 (58)
18 KOG2243 Ca2+ release channel ( 98.9 3.9E-10 8.4E-15 122.9 1.3 143 76-221 656-826 (5019)
19 PF08513 LisH: LisH; InterPro 98.0 7.5E-06 1.6E-10 51.2 3.0 26 241-266 2-27 (27)
20 KOG0275 Conserved WD40 repeat- 97.5 0.00067 1.5E-08 66.5 9.8 178 237-451 5-185 (508)
21 smart00667 LisH Lissencephaly 97.4 0.00022 4.7E-09 46.5 3.4 29 240-268 4-32 (34)
22 PF07177 Neuralized: Neuralize 92.9 0.53 1.1E-05 36.4 7.0 57 53-116 9-67 (69)
23 smart00588 NEUZ domain in neur 92.8 3.2 7E-05 35.8 12.5 102 53-176 9-123 (123)
24 KOG2242 Scaffold/matrix specif 92.5 0.033 7.2E-07 60.1 -0.3 85 123-211 120-212 (558)
25 KOG1333 Uncharacterized conser 90.3 0.45 9.8E-06 44.0 4.7 137 241-394 7-151 (241)
26 KOG2242 Scaffold/matrix specif 82.2 0.96 2.1E-05 49.0 2.7 90 128-224 8-102 (558)
27 PF09398 FOP_dimer: FOP N term 80.5 2.7 5.8E-05 33.5 4.0 29 241-269 20-48 (81)
28 PF14559 TPR_19: Tetratricopep 74.3 5.5 0.00012 29.5 4.2 56 299-360 1-56 (68)
29 KOG2910 Uncharacterized conser 67.1 4.9 0.00011 37.0 2.7 63 291-355 41-115 (209)
30 KOG4625 Notch signaling protei 60.0 44 0.00095 36.1 8.6 120 54-185 109-239 (595)
31 PF04053 Coatomer_WDAD: Coatom 56.0 1.1E+02 0.0024 32.4 11.0 78 240-354 295-372 (443)
32 PF04494 TFIID_90kDa: WD40 ass 53.4 20 0.00044 31.6 4.2 48 326-375 39-86 (142)
33 KOG4625 Notch signaling protei 52.8 91 0.002 33.8 9.5 158 40-210 289-467 (595)
34 KOG3060 Uncharacterized conser 51.7 43 0.00093 32.8 6.3 57 302-364 99-155 (289)
35 PF13765 PRY: SPRY-associated 49.8 19 0.00041 25.5 2.8 25 46-71 2-26 (49)
36 KOG1156 N-terminal acetyltrans 48.5 2.3E+02 0.005 31.4 11.8 126 292-430 188-332 (700)
37 PF10989 DUF2808: Protein of u 47.9 57 0.0012 28.9 6.3 52 63-114 90-142 (146)
38 PTZ00196 60S ribosomal protein 46.6 28 0.00061 28.7 3.7 32 329-360 48-79 (98)
39 PF13432 TPR_16: Tetratricopep 46.4 50 0.0011 24.0 4.9 58 296-359 4-61 (65)
40 PF01158 Ribosomal_L36e: Ribos 45.0 29 0.00063 28.7 3.5 45 329-376 48-92 (98)
41 PRK10564 maltose regulon perip 44.8 22 0.00049 35.4 3.4 23 293-315 261-283 (303)
42 KOG0307 Vesicle coat complex C 44.5 1.7E+02 0.0037 34.2 10.5 32 149-180 351-382 (1049)
43 cd08044 TAF5_NTD2 TAF5_NTD2 is 44.2 31 0.00068 30.0 3.9 53 326-380 28-80 (133)
44 COG5051 RPL36A Ribosomal prote 42.2 40 0.00088 27.0 3.8 46 329-377 50-95 (97)
45 KOG0292 Vesicle coat complex C 41.8 23 0.00049 40.2 3.2 28 240-267 620-647 (1202)
46 PRK04966 hypothetical protein; 40.7 36 0.00078 26.5 3.2 19 236-254 7-25 (72)
47 COG5109 Uncharacterized conser 39.6 4.1E+02 0.009 26.8 13.2 133 289-431 138-294 (396)
48 PF13838 Clathrin_H_link: Clat 38.0 56 0.0012 25.0 3.9 24 331-354 8-31 (66)
49 KOG3452 60S ribosomal protein 37.8 46 0.001 27.3 3.6 46 329-377 50-95 (102)
50 smart00589 PRY associated with 37.2 38 0.00082 23.6 2.8 26 44-70 3-28 (52)
51 PF06588 Muskelin_N: Muskelin 36.6 40 0.00087 31.5 3.5 29 242-270 168-196 (199)
52 PF06794 UPF0270: Uncharacteri 35.3 29 0.00064 26.8 2.0 19 236-254 7-25 (70)
53 TIGR03362 VI_chp_7 type VI sec 34.2 3.1E+02 0.0068 27.4 9.7 148 209-359 91-280 (301)
54 PRK00304 hypothetical protein; 32.3 69 0.0015 25.1 3.6 18 237-254 8-25 (75)
55 PF09862 DUF2089: Protein of u 31.4 65 0.0014 27.4 3.7 22 291-312 89-112 (113)
56 PF12569 NARP1: NMDA receptor- 31.0 3.6E+02 0.0077 29.3 10.2 72 297-374 12-83 (517)
57 PF14041 Lipoprotein_21: LppP/ 28.5 1.2E+02 0.0026 24.4 4.7 38 169-209 26-63 (89)
58 PF08625 Utp13: Utp13 specific 27.0 2.5E+02 0.0054 24.8 6.8 21 294-314 2-22 (141)
59 PF04121 Nup84_Nup100: Nuclear 26.9 1.2E+02 0.0026 34.1 6.0 31 284-314 128-158 (697)
60 PF09295 ChAPs: ChAPs (Chs5p-A 26.2 3.5E+02 0.0075 28.3 8.8 86 246-355 175-260 (395)
61 PF12895 Apc3: Anaphase-promot 26.0 47 0.001 25.7 1.9 53 295-354 31-83 (84)
62 PF12854 PPR_1: PPR repeat 25.9 88 0.0019 20.0 2.9 22 294-315 12-33 (34)
63 PF13934 ELYS: Nuclear pore co 25.3 3.7E+02 0.008 25.6 8.2 171 214-429 20-197 (226)
64 KOG4600 Mitochondrial ribosoma 24.6 51 0.0011 28.8 1.9 32 149-180 67-103 (144)
65 PF07721 TPR_4: Tetratricopept 24.2 85 0.0018 18.7 2.4 18 296-313 8-25 (26)
66 PF07035 Mic1: Colon cancer-as 24.1 1.9E+02 0.0041 26.4 5.6 24 240-263 29-52 (167)
67 PLN03088 SGT1, suppressor of 23.9 7.4E+02 0.016 25.2 10.7 109 244-374 7-115 (356)
68 PF14276 DUF4363: Domain of un 23.6 1.7E+02 0.0038 24.6 5.1 44 293-337 32-75 (121)
69 PF13371 TPR_9: Tetratricopept 23.2 3E+02 0.0065 20.0 7.2 56 298-359 4-59 (73)
70 COG4105 ComL DNA uptake lipopr 22.9 5.8E+02 0.013 25.0 8.9 65 292-363 37-105 (254)
71 TIGR02552 LcrH_SycD type III s 22.1 4.5E+02 0.0098 21.6 9.8 97 242-360 20-116 (135)
72 KOG1538 Uncharacterized conser 21.4 1.7E+02 0.0037 32.5 5.4 61 294-355 778-843 (1081)
73 PF07208 DUF1414: Protein of u 20.9 1.2E+02 0.0026 21.2 2.8 19 391-409 25-43 (44)
74 PRK07764 DNA polymerase III su 20.6 1.3E+03 0.029 26.6 13.2 21 294-314 252-272 (824)
75 PF01052 SpoA: Surface present 20.2 1.4E+02 0.0031 22.9 3.5 30 153-183 28-57 (77)
No 1
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=100.00 E-value=9.8e-38 Score=323.20 Aligned_cols=416 Identities=36% Similarity=0.482 Sum_probs=334.9
Q ss_pred CCcccCCCCCccccCCCCCCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEee
Q 012451 35 EEDFEEEEVPTELNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFT 114 (463)
Q Consensus 35 ~~~~~~~~~p~~w~~~~~~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~ 114 (463)
+.+++...+|+.||+.+..+.+..+++|...+.+.+......+++++.++.++|..+++|||||.|...+..+.+.||+.
T Consensus 22 ~~~~~~d~i~~~~~~~~~~~~~~~~~~~~gi~f~~~~~~~~~dvg~~~~~~~~~~N~~~~~Fe~~i~d~g~~~~i~i~~~ 101 (469)
T KOG1477|consen 22 PVFTTGDVIPCEVNTINGSDFFTKNGPDMGIAFYTPPALLYHDVGVVQAGEPLPANFGIYYFEFDILDYGIEGRIKIGFL 101 (469)
T ss_pred CcCCccccccceEeccCCceeEEEEcCCcceeeecCccccCCCcceeeCCCCCCcccccceeeeeHHHhhhhhceEEEEE
Confidence 34566777899999999878777899999999888875555689999999999999999999999998888899999999
Q ss_pred CCCCCCCCCCCCCCCeeEEEcCCCcEEe-cCCCCcccCCCCCCCCeEEEEEeccCcEEEEEECCeeeccccccCCCCccc
Q 012451 115 SESFKMRRQPGWEANSCGYHGDDGLLYR-GQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFP 193 (463)
Q Consensus 115 ~~~~~~~~~~G~~~~S~gy~~~~G~~~~-~~~~~~~yg~~~~~GDvIGcgid~~~~~ifFtkNG~~lg~af~~i~~~lyP 193 (463)
...+++...+||..+||+|++++|.+++ +...+..|+++|+.||.|||++++...+||||+||..+|.+++.+...++|
T Consensus 102 ~~~~~~~~~~g~~~~s~~y~g~~g~l~~~~~~~~~~~~~~~~~~D~ig~~~~~~~q~i~~t~~g~~~~~~~~~~~~~~~~ 181 (469)
T KOG1477|consen 102 IDSFSIIESEGYTMNSLGYHGNSGLLDNGGAELGEEFGPTFTTGDEIGCGINEITQEIFFTKNGTEVGEIIKPLSPDLLE 181 (469)
T ss_pred ecccccccccchhhhhhcccCCchhhhhhhhhhchhhcCCCCccceeeeccchhhheeeeccCccccccccccccccccc
Confidence 9999999999999999999999999999 667789999999999999999999999999999999999999999888888
Q ss_pred E----EEEccCCeEEEEecC-CCCCcCChhhhhHHHHH-----------------HHhhhhhhcCCCCcchhHHHHHHHH
Q 012451 194 T----IAVHSQNEEVLVNFG-QKKFAFDLKEYEAQERM-----------------KQQMTIEKISLPPNVSYGLVRSYLQ 251 (463)
Q Consensus 194 ~----V~~~~~~~~v~~NFG-~~pF~f~~~~~~~~~~~-----------------~~~~~I~~~~l~~~~l~~LI~~yL~ 251 (463)
. +.+.+++..|.+||| ..+|.|+...+...... .....+....++......++..|++
T Consensus 182 ~~~n~~~~~s~~~~I~~~~g~~~~~~fd~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~l~t~~~~~~~l 261 (469)
T KOG1477|consen 182 ENGNLAWLFSPNEEVEVNFGLEEEFRFDFSGYPKSQSSLPVSPIPSKIFEDSYPENKKRNVEKEVISFNLSTVPYPYFLL 261 (469)
T ss_pred cccceeeEeccCceeeeeecCCCceeeccccccccccccccccccccccccccccccccccccceecccccCCCccceec
Confidence 8 888889999999999 78999998765433211 1111122222333345578999999
Q ss_pred hcChHHHHHHHHHhcCCCCCCcccccccCCCcc-----hhhhhHHHHHHHHHHHHcCCHHHHHHHHHhhCCcchhcCCCc
Q 012451 252 HYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQ-----DNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSS 326 (463)
Q Consensus 252 ~~Gy~eta~af~~es~~~~~~~~~~~~~~~~e~-----~~~~~~~~R~~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~s~ 326 (463)
+.||.++++.|...+.....+....+++..+.. ........|+.+...+..|....|+.-.......+.+...+.
T Consensus 262 ~~~~~~s~~~~s~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 341 (469)
T KOG1477|consen 262 PGGYEESIAYFSTGARRFNDPFTGKEENSIDAVGSQTDKIGLDYHQRKGRGQFTRNGAYNAALIPTYRKVGQVFEVDYPQ 341 (469)
T ss_pred CcchhhhhhhhcchhhccCCcccchhhhhhhccccccchhhhhhhhhcCcceeechhhhcccccccccccceeecccccc
Confidence 999999999998776543223222222222211 112223333344444444444444443333333222222347
Q ss_pred eeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcC---CcchHHHHHHhhheeeecCCCCCchhhcCCHhHHHHHHHHHH
Q 012451 327 TCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFG---LAGFEELVQDCVALLAYEKPQESSVGYLLEDSQREIVADTVN 403 (463)
Q Consensus 327 l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~---~~~~~~~l~~~~~LLay~~~~~sp~~~ll~~~~R~~la~~vn 403 (463)
..+++.|+.+|++.+.+.+..++++.+.++++.-+ +.....+++..++||+|.+|..||...++++.+|+-+++.+|
T Consensus 342 ~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays~p~~s~~g~~~~~~~~e~v~~~~n 421 (469)
T KOG1477|consen 342 RGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYSDPEESPVGYLLDPIQREPVAEALN 421 (469)
T ss_pred hhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhcCcccCccccccCcccchhHHhhhc
Confidence 89999999999999999999999999999998876 667889999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCCceeEehhhhc
Q 012451 404 AMILSTNPNVKDLHGCLHSCLERLLRQLTACCLERRSMNGDQGEAFHLHRVLN 456 (463)
Q Consensus 404 ~aIL~~~~~~~~p~~~~~s~LE~l~~q~~~~q~~~~~~~~~~~~~~~~~~~~~ 456 (463)
.+||...+.++ ...||.++.|+.++...++..+.+.+.++++++.++
T Consensus 422 ~~il~t~~~~~------~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (469)
T KOG1477|consen 422 SAILETDNNSK------DPDLERVLSQTPAELSLYARDNPPRNDFVRDRDYFH 468 (469)
T ss_pred ccccccCCCCc------cchhhhhhccchhhHhhhhhcCCCccceecchhhhc
Confidence 99999988764 456999999999999999999999999999998875
No 2
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-34 Score=268.71 Aligned_cols=191 Identities=28% Similarity=0.398 Sum_probs=175.5
Q ss_pred hhhhcCCCCcchhHHHHHHHHhcChHHHHHHHHHhcCCCCCCcccccccCCCcchhhhhHHHHHHHHHHHHcCCHHHHHH
Q 012451 231 TIEKISLPPNVSYGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFD 310 (463)
Q Consensus 231 ~I~~~~l~~~~l~~LI~~yL~~~Gy~eta~af~~es~~~~~~~~~~~~~~~~e~~~~~~~~~R~~Ir~~Il~G~id~Al~ 310 (463)
.+..+.+..+++++||++||+|+||.|+|+.|++++++..|.++ .+.+..|.+||.+|..|+|++|++
T Consensus 18 ~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d------------~~~~~eR~~Ir~~I~~G~Ie~Aie 85 (228)
T KOG2659|consen 18 QLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSID------------LDSMDERLQIRRAIEEGQIEEAIE 85 (228)
T ss_pred HHhccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCc------------hhhHhHHHHHHHHHHhccHHHHHH
Confidence 35677888899999999999999999999999999998765444 358899999999999999999999
Q ss_pred HHHhhCCcchhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcC-CcchHHHHHHhhheeeecCCCCCchhhc
Q 012451 311 KLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFG-LAGFEELVQDCVALLAYEKPQESSVGYL 389 (463)
Q Consensus 311 ~l~~~~p~ll~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~-~~~~~~~l~~~~~LLay~~~~~sp~~~l 389 (463)
.+++++|++++++. .|.|+|++|+||||||++..++||+|||++++|++. +..++.+++++|+||+|++++.||++++
T Consensus 86 ~in~l~PeiLd~n~-~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l 164 (228)
T KOG2659|consen 86 KVNQLNPEILDTNR-ELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAEL 164 (228)
T ss_pred HHHHhChHHHccch-hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHH
Confidence 99999999999986 899999999999999999999999999999999985 3478899999999999999999999999
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHh
Q 012451 390 LEDSQREIVADTVNAMILSTNPNVKDLHGCLHSCLERLLRQLTACCLERRS 440 (463)
Q Consensus 390 l~~~~R~~la~~vn~aIL~~~~~~~~p~~~~~s~LE~l~~q~~~~q~~~~~ 440 (463)
++.++|.++|++||++||.+++.. ..++|..|++...|.+.++..
T Consensus 165 ~~~s~R~kvA~~vN~aiL~~~~~~------~~~~l~~llk~~~~~~~~~~~ 209 (228)
T KOG2659|consen 165 LSQSLRQKVASEVNSAILASQEHE------SEPKLPFLLKLISWAQEELDR 209 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc------ccchHHHHHHHHHHHHHHHhH
Confidence 999999999999999999998774 378999999999999888743
No 3
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=99.93 E-value=6.2e-26 Score=202.44 Aligned_cols=139 Identities=35% Similarity=0.510 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhCCcchhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHHHH
Q 012451 290 LNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELV 369 (463)
Q Consensus 290 ~~~R~~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~~l 369 (463)
+.+|++|+++|++|++++|++|+++++|.+++.++ .++|.|++|+|||||+.+++.+||+|||++++++. ..+.+++
T Consensus 2 ~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~-~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~--~~~~~~l 78 (145)
T PF10607_consen 2 FKERKKIRQAILNGDIDPAIEWLNENFPELLKRNS-SLEFELRCQQFIELLREGDIMEAIEYARKHLSPFN--DEFLEEL 78 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhH--HHHHHHH
Confidence 56899999999999999999999999999999985 89999999999999999999999999999997775 3688999
Q ss_pred HHhhheeeecCCCC---CchhhcCCHhHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHHHHH
Q 012451 370 QDCVALLAYEKPQE---SSVGYLLEDSQREIVADTVNAMILSTNPNVKDLHGCLHSCLERLLRQLTACCLE 437 (463)
Q Consensus 370 ~~~~~LLay~~~~~---sp~~~ll~~~~R~~la~~vn~aIL~~~~~~~~p~~~~~s~LE~l~~q~~~~q~~ 437 (463)
+++|+||+|.+|.+ +|+++++++++|++||++||++|+.+.|.+ +.|.||.++++..+++..
T Consensus 79 ~~~~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~------~~s~L~~~~~~g~~~l~~ 143 (145)
T PF10607_consen 79 KKLMSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLP------KESPLEVILKAGLSALKT 143 (145)
T ss_pred HHHHHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcC------CCCHHHHHHHHHHHHhhh
Confidence 99999999999987 899999999999999999999999999875 489999999999987654
No 4
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.93 E-value=7.4e-26 Score=224.08 Aligned_cols=172 Identities=23% Similarity=0.409 Sum_probs=149.3
Q ss_pred cCCCCCccccCCCCCCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEeeCCCC
Q 012451 39 EEEEVPTELNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESF 118 (463)
Q Consensus 39 ~~~~~p~~w~~~~~~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~~~~~ 118 (463)
+..+.++.+|+.+ .+..+.|.+|||.+..... +.|-.+|++.++. ..|+|||||+|.+. |...|||+|...
T Consensus 83 ~ga~~~w~mn~~D-rg~alaI~~dGL~CqSre~----KeWhGcRaT~Gl~-gkGK~YyEvtitd~---GLCRVGWsT~qa 153 (725)
T KOG0349|consen 83 DGAPREWKMNKQD-RGLALAIDEDGLACQSREK----KEWHGCRATAGLY-GKGKYYYEVTITDK---GLCRVGWSTLQA 153 (725)
T ss_pred CCCccccccCccc-cCceeeEcCCccccchhHH----hhhhccccccccc-cCceEEEEEEeccC---ceeeechhhccc
Confidence 4567889999977 5778999999999986653 3688899999985 47999999999876 589999999988
Q ss_pred CCCCCCCCCCCeeEEEcCCCcEEecCCCCcccCCCCCCCCeEEEEEeccCcEEEEEECCeeeccccccC----CCCcccE
Q 012451 119 KMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDI----KGPLFPT 194 (463)
Q Consensus 119 ~~~~~~G~~~~S~gy~~~~G~~~~~~~~~~~yg~~~~~GDvIGcgid~~~~~ifFtkNG~~lg~af~~i----~~~lyP~ 194 (463)
+++ +|.+..+|||.| .|++.++ .+...||.+|+..|||||.+|+++++|+|+|||+.+|.||... +..+||+
T Consensus 154 sLd--lGt~~~gFGfGG-TGkKS~n-kqFDdYGe~Ft~~DvIGCyLDld~~~v~fsKNG~~lg~AF~ip~~~kn~~lfPA 229 (725)
T KOG0349|consen 154 SLD--LGTGLDGFGFGG-TGKKSTN-KQFDDYGEPFTLNDVIGCYLDLDSRTVWFSKNGEQLGAAFSIPVKYKNSNLFPA 229 (725)
T ss_pred ccc--cCccccccccCc-cCccccc-cccccccCcccccceeeEEEeccCceEEEecCccccceeEEcChhhcccccchh
Confidence 776 788889999999 7998877 5788999999999999999999999999999999999999753 5689999
Q ss_pred EEEccCCeEEEEecCCCCCcCChh-hhhHHHH
Q 012451 195 IAVHSQNEEVLVNFGQKKFAFDLK-EYEAQER 225 (463)
Q Consensus 195 V~~~~~~~~v~~NFG~~pF~f~~~-~~~~~~~ 225 (463)
|-+. +..+++|||.+||+|+|- +|++-+.
T Consensus 230 vvlk--Nael~fNFG~~~FKfpPgngFva~s~ 259 (725)
T KOG0349|consen 230 VVLK--NAELSFNFGSQPFKFPPGNGFVAVSD 259 (725)
T ss_pred eeec--cceEEEecCCCccccCCCCceEEeec
Confidence 9999 579999999999999984 4665433
No 5
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....
Probab=99.91 E-value=1.2e-23 Score=181.74 Aligned_cols=117 Identities=33% Similarity=0.653 Sum_probs=102.4
Q ss_pred CCeEEEEEEEEecCCCCeEEEEeeCCCC---CCCCCCCCCCCeeEEEcCCCcEEecCCCCcccCCCCCC-CCeEEEEEec
Q 012451 91 RLVYYFEIYVKDAGAKGQIAIGFTSESF---KMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTT-NDTVGGGINY 166 (463)
Q Consensus 91 ~g~~YfEV~I~~~~~~~~i~IG~~~~~~---~~~~~~G~~~~S~gy~~~~G~~~~~~~~~~~yg~~~~~-GDvIGcgid~ 166 (463)
+|+|||||+|.+.+ .+.|||++... ......|++..||||++++|..+++. ....++.++.. ||||||++|+
T Consensus 1 sG~~YwEV~v~~~~---~~~iGv~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~dvIG~~lD~ 76 (124)
T PF00622_consen 1 SGKHYWEVEVDSGG---SISIGVATSSASVSGDENLSGYDPFSWGFHGDGGKKYHGG-TSEETGSPFQEPGDVIGCGLDL 76 (124)
T ss_dssp SSEEEEEEEETGGC---TEEEEEEETTSEESSSTS-TTSSTTEEEEETTTTTEEEST-SSSECSCTSSTTTSEEEEEEET
T ss_pred CcCEEEEEEEecCc---CEEEEEeECccccCCccccCCccccceeeeccccccceee-cccccccccccCCcEEEEEEee
Confidence 48999999998874 39999999988 55677899999999999877898874 55888999998 9999999999
Q ss_pred cCcEEEEEECCeeec-cccccC--CCCcccEEEEccCCeEEEEecCCCC
Q 012451 167 ASQEFFFTKNGSLVG-AVYKDI--KGPLFPTIAVHSQNEEVLVNFGQKK 212 (463)
Q Consensus 167 ~~~~ifFtkNG~~lg-~af~~i--~~~lyP~V~~~~~~~~v~~NFG~~p 212 (463)
++++|+||+||+.++ .+|+++ ..++||+|++.. ++++++|||++|
T Consensus 77 ~~g~l~F~~ng~~~~~~~f~~~~~~~~l~P~v~~~~-~~~~~~n~g~~~ 124 (124)
T PF00622_consen 77 DNGELSFYKNGKFLGIYAFTDIDFSEPLYPAVSLGG-GQSVELNFGQRP 124 (124)
T ss_dssp TTTEEEEEETTEEEEEEEEESCTTSSSBEEEEEEES-TSEEEEEEEC--
T ss_pred cccEEEEEECCccceeEEEECCCCCCcEEEEEEecC-CCEEEEEeCCCC
Confidence 999999999999999 899977 459999999997 789999999976
No 6
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=4.6e-24 Score=216.51 Aligned_cols=157 Identities=25% Similarity=0.423 Sum_probs=140.9
Q ss_pred CCCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEeeCCCCCCCCCCCCCCCee
Q 012451 52 SSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSC 131 (463)
Q Consensus 52 ~~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~~~~~~~~~~~G~~~~S~ 131 (463)
+....+.||.|.|+++-. +++++|||+|.|. .|.|||||+|........+++||+....++...+|+|..||
T Consensus 299 drA~ql~Is~drlt~tge------KGy~MvRAshgv~--~G~WYFEI~vd~~pd~~a~RlGwsq~~g~LqApvGYdkfsY 370 (544)
T KOG2626|consen 299 DRAEQLKISEDRLTATGE------KGYRMVRASHGVL--EGAWYFEIKVDEMPDDAAIRLGWSQLYGNLQAPVGYDKFSY 370 (544)
T ss_pred cccccccccccceeeecc------cceeeeeeccccc--ccceeEEEEeecCCCccceeeeccccccccccccccccccc
Confidence 356689999999999732 3699999999985 79999999999988888999999999999999999999999
Q ss_pred EEEcCCCcEEecCCCCcccCCCCCCCCeEEEEEeccC-------------------------------------------
Q 012451 132 GYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYAS------------------------------------------- 168 (463)
Q Consensus 132 gy~~~~G~~~~~~~~~~~yg~~~~~GDvIGcgid~~~------------------------------------------- 168 (463)
|++..+|.++|. ..++.|...|+.||||||.|++..
T Consensus 371 ~wRdk~GtKfh~-s~gk~Y~~gf~qGDvLGf~I~LP~~~~~~~~lp~~~kdk~lI~yK~~lyfe~~d~v~k~~k~l~~~p 449 (544)
T KOG2626|consen 371 GWRDKKGTKFHE-SLGKHYSDGFGQGDVLGFYINLPKDLSPEKYLPLTHKDKFLIKYKGHLYFEDPDNVAKIEKTLKIKP 449 (544)
T ss_pred cccccCCcchhh-hhhhhhhhhccCCceEEEEEecCCcccccccCCccccccceeeeeeeeEEEccchhhhhhhccccCC
Confidence 999999999998 478999999999999999999642
Q ss_pred -cEEEEEECCeeeccccccC--CCCcccEEEEccCCeEEEEecCCCCCcCChhh
Q 012451 169 -QEFFFTKNGSLVGAVYKDI--KGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKE 219 (463)
Q Consensus 169 -~~ifFtkNG~~lg~af~~i--~~~lyP~V~~~~~~~~v~~NFG~~pF~f~~~~ 219 (463)
..|.|+|||+.+|+||++| .|.+||+||++. ++.|++|||. -|+|.+..
T Consensus 450 gS~I~f~KNG~~qG~Ay~ni~~~G~YyPaIS~yk-s~tv~~nfGP-~F~~~p~~ 501 (544)
T KOG2626|consen 450 GSEIEFFKNGVSQGVAYENIYKAGAYYPAISIYK-SCTVKFNFGP-QFRYPPCV 501 (544)
T ss_pred CceEEEeecccchhhhhhhhhccccccceeeecc-cceEEEeccc-cccCCccc
Confidence 4689999999999999999 378999999996 6999999997 79997753
No 7
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=99.90 E-value=6.9e-23 Score=176.95 Aligned_cols=115 Identities=30% Similarity=0.547 Sum_probs=102.1
Q ss_pred CCeEEEEEEEEecCCCCeEEEEeeCCCCC--CCCCCCCCCCeeEEEcCCCcEEecCCCCcccCCCCCC-CCeEEEEEecc
Q 012451 91 RLVYYFEIYVKDAGAKGQIAIGFTSESFK--MRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTT-NDTVGGGINYA 167 (463)
Q Consensus 91 ~g~~YfEV~I~~~~~~~~i~IG~~~~~~~--~~~~~G~~~~S~gy~~~~G~~~~~~~~~~~yg~~~~~-GDvIGcgid~~ 167 (463)
+|+|||||+|.. ++.++|||++..++ ....+|++..||||+.++|..|++. ....++.++.. ||+|||++|++
T Consensus 1 sG~~YwEV~v~~---~~~~~vGv~~~~~~r~~~~~~G~~~~sw~~~~~~g~~~~~~-~~~~~~~~~~~~gd~iGv~lD~~ 76 (122)
T smart00449 1 SGRHYFEVEIFD---GGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNS-TGPEYGLPLQEPGDVIGCFLDLE 76 (122)
T ss_pred CCcEEEEEEEcC---CCeEEEEEEcCccCCCccccCCCCCCEEEEEcCCCcEEeCC-CCCccCccccCCCCEEEEEEECC
Confidence 489999999986 36899999999887 5778999999999999888999874 34678889986 99999999999
Q ss_pred CcEEEEEECCeee-ccccccC--CCCcccEEEEccCCeEEEEecCC
Q 012451 168 SQEFFFTKNGSLV-GAVYKDI--KGPLFPTIAVHSQNEEVLVNFGQ 210 (463)
Q Consensus 168 ~~~ifFtkNG~~l-g~af~~i--~~~lyP~V~~~~~~~~v~~NFG~ 210 (463)
+++|+||+||+.+ +.+|.++ .+++||+|++... +.+++|||+
T Consensus 77 ~g~l~F~~ng~~~~~~~f~~~~~~~~l~P~~~~~~~-~~~~~n~g~ 121 (122)
T smart00449 77 AGTISFYKNGKYLHGLAFFDVKFSGPLYPAVSLGSG-CSVRLNFGP 121 (122)
T ss_pred CCEEEEEECCCEeeeEEEeccCCCCcEeeEEEcCCC-CEEEEEecC
Confidence 9999999999999 7899877 5699999999964 499999996
No 8
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1.2e-20 Score=184.31 Aligned_cols=168 Identities=20% Similarity=0.221 Sum_probs=145.3
Q ss_pred cchhHHHHHHHHhcChHHHHHHHHHhcCCCCCCcccccccCCCcchhhhhHHHHHHHHHHHHcCCHHHHHHHHHhhCCcc
Q 012451 240 NVSYGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWI 319 (463)
Q Consensus 240 ~~l~~LI~~yL~~~Gy~eta~af~~es~~~~~~~~~~~~~~~~e~~~~~~~~~R~~Ir~~Il~G~id~Al~~l~~~~p~l 319 (463)
..++++|++||.|+||.++|..|.+++.+++ -+| .+.+...+.|+++|++|++.+|+.||++|.-+|
T Consensus 116 ~~l~r~vvdhmlr~gy~~~A~~L~K~s~led-lvD------------~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~L 182 (389)
T KOG0396|consen 116 NKLDRFVVDHMLRNGYFGAAVLLGKKSQLED-LVD------------SDVYKRAYGIRDSLLAGELEPALSWCKEHKVEL 182 (389)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhh-hHh------------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3578999999999999999999999998753 122 236778889999999999999999999999888
Q ss_pred hhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHHHHHHhhheeeecC-CCCCchhhcCCHhHHHHH
Q 012451 320 VQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALLAYEK-PQESSVGYLLEDSQREIV 398 (463)
Q Consensus 320 l~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~~l~~~~~LLay~~-~~~sp~~~ll~~~~R~~l 398 (463)
-+.. |.++|.|+.|+|||||+.+++.+||.|+|++|+|+. ..+.++|+.+|++|||+. ++.+++..+++..+|+.+
T Consensus 183 kK~~-S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~--~~~~~~Lk~a~g~laF~~~t~~sky~~l~~~~rw~~l 259 (389)
T KOG0396|consen 183 KKEE-SSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWA--KSHKSDLKLAMGLLAFPKYTSSSKYLNLLTADRWSVL 259 (389)
T ss_pred Hhcc-chhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhh--hhhHHHHHHHHHhhcCccccCcccccCcccHHHHHHH
Confidence 8776 589999999999999999999999999999999998 588899999999999985 555779999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcchHHHHHHH
Q 012451 399 ADTVNAMILSTNPNVKDLHGCLHSCLERLLR 429 (463)
Q Consensus 399 a~~vn~aIL~~~~~~~~p~~~~~s~LE~l~~ 429 (463)
++.+-+-.++-.+-+. .++|-..++
T Consensus 260 ~~lF~s~a~~l~~i~~------~~~L~~~l~ 284 (389)
T KOG0396|consen 260 ADLFLSEALKLFGIPI------NPALTIYLQ 284 (389)
T ss_pred HHHhhHHHHHHhCCCC------CcHHHHHHH
Confidence 9999998887665542 455555554
No 9
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]
Probab=99.78 E-value=3.8e-18 Score=157.44 Aligned_cols=199 Identities=13% Similarity=0.175 Sum_probs=157.1
Q ss_pred ccccCCCCCCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEeeCCCCCCC---
Q 012451 45 TELNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMR--- 121 (463)
Q Consensus 45 ~~w~~~~~~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~~~~~~~~--- 121 (463)
..||+.+++-...+..+|+++++...... ....+|+...+. .|.++|||.+..........||++|+.+++.
T Consensus 27 ~~w~~~drs~nv~vk~~~~~tfhrhpvaq---std~~rGk~g~~--~g~h~w~i~w~~r~~GT~avVGIaTk~Aplha~g 101 (242)
T KOG3953|consen 27 HGWSPSDRSLNVFVKLPDGLTFHRHPVAQ---STDGIRGKRGYS--RGRHAWEIAWPNRQRGTHAVVGIATKVAPLHAVG 101 (242)
T ss_pred hccCcccccceeEEecCCcceEEecCCcc---ccccccceeeec--cCceEEEEEecCCccCCcceEEEEcccCchhhhH
Confidence 89999776555555677779998776432 255678888774 7999999999986555689999999988764
Q ss_pred --CCCCCCCCeeEEEcCCCcEEecCCCCccc-----CCCCCCCCeEEEEEeccCcEEEEEECCeeeccccccC-CCCccc
Q 012451 122 --RQPGWEANSCGYHGDDGLLYRGQGKGEAF-----GPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDI-KGPLFP 193 (463)
Q Consensus 122 --~~~G~~~~S~gy~~~~G~~~~~~~~~~~y-----g~~~~~GDvIGcgid~~~~~ifFtkNG~~lg~af~~i-~~~lyP 193 (463)
+++|.+..|||++-.++.+||++...-.| .++|..+|.|+|++|++.+++.|.+||++||+||.++ ...+||
T Consensus 102 y~aLlGs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~egtl~F~~~~e~LGvAFRgL~~~~LYP 181 (242)
T KOG3953|consen 102 YTALLGSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIEGTLSFAADGEYLGVAFRGLKDKKLYP 181 (242)
T ss_pred HHHHhCCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeeccceEEEEECCeEEeeeecCCCCCccee
Confidence 57999999999999888999985332223 5779999999999999999999999999999999999 669999
Q ss_pred EEEEccCCeEEEEecCCCCCcCChhhhhHHHHHHHhhhhhhcCCCCcchhHHHHH
Q 012451 194 TIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPNVSYGLVRS 248 (463)
Q Consensus 194 ~V~~~~~~~~v~~NFG~~pF~f~~~~~~~~~~~~~~~~I~~~~l~~~~l~~LI~~ 248 (463)
+||.....+.|+.-.-++|+.=++..++..+|..+...+...++....+..++..
T Consensus 182 ~Vsav~g~~Evtm~Ylg~~~~~e~~~~~~~~r~~~r~~~~~~~~i~~l~~~~~~k 236 (242)
T KOG3953|consen 182 AVSAVWGHCEVTMKYLGTLDVDEPDPLANLCRRRLRSSLGGDELITALVHEPCDK 236 (242)
T ss_pred eeeehhcceeEEEEEeCCcCcCCccccchhhhhhhhhccCCcccccccccchhhc
Confidence 9999988899998887778855666788888887776665544443444444443
No 10
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.3e-16 Score=153.66 Aligned_cols=168 Identities=15% Similarity=0.176 Sum_probs=145.2
Q ss_pred hhHHHHHHHHhcChHHHHHHHHHhcCCCCCCcccccccCCCcchhhhhHHHHHHHHHHHHcCCHHHHHHHHHhhCCcchh
Q 012451 242 SYGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQ 321 (463)
Q Consensus 242 l~~LI~~yL~~~Gy~eta~af~~es~~~~~~~~~~~~~~~~e~~~~~~~~~R~~Ir~~Il~G~id~Al~~l~~~~p~ll~ 321 (463)
++.+|..|++++|..+++..|.+|++...+..+ ....+.+.++|.++|..||+..|++|+..+.-.|.+
T Consensus 119 ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~-----------~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~ 187 (394)
T KOG2817|consen 119 LNEAIVYHFYRQGMDDVGECLIKEAGLSEDESK-----------SRTEFVELNQIVEALKERDLEPALEWAESNRQKLKE 187 (394)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHhcCCCcchh-----------hhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcc
Confidence 588999999999999999999999996433111 223567789999999999999999999999888888
Q ss_pred cCCCceeehhhhHHHHHHHhcCCHH--HHHHHHHHHHhhhcCCcchHHHHHHhhheeeecC--CCCCchhhcCCHhHHHH
Q 012451 322 DDKSSTCFLLHCQKFIELVRVGALE--EAVKYGRMELAKYFGLAGFEELVQDCVALLAYEK--PQESSVGYLLEDSQREI 397 (463)
Q Consensus 322 ~~~s~l~F~L~~qkfIElir~~~~~--eAl~~ar~~l~~~~~~~~~~~~l~~~~~LLay~~--~~~sp~~~ll~~~~R~~ 397 (463)
.+. .|+|.|+.++|+++++.|... +||.|||++++||. ..+.++||.+|++|.|-. .+.|||.+++++..|..
T Consensus 188 ~~s-~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~--~~~~~eIQklm~sl~~l~~gl~~spy~~~ls~~~w~~ 264 (394)
T KOG2817|consen 188 KSS-SLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFV--ADHLREIQKLMGSLLYLRNGLEKSPYSEILSPKLWKE 264 (394)
T ss_pred ccc-cHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccc--cchHHHHHHHHHHHHHHHcCCCCCChHHHhCHHHHHH
Confidence 774 899999999999999988766 99999999999997 455899999999999953 57899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCcchHHHHHHH
Q 012451 398 VADTVNAMILSTNPNVKDLHGCLHSCLERLLR 429 (463)
Q Consensus 398 la~~vn~aIL~~~~~~~~p~~~~~s~LE~l~~ 429 (463)
+.+++-+-.....|-+ .+|.|--++.
T Consensus 265 ~~~~f~r~ycallg~s------~eSPL~v~v~ 290 (394)
T KOG2817|consen 265 LTEEFTREYCALLGIS------VESPLSVLVN 290 (394)
T ss_pred HHHHHHHHHHHHcCCC------ccCcHHHHHH
Confidence 9999999887777764 4778877765
No 11
>KOG4030 consensus Uncharacterized conserved protein, contains SPRY domain [Function unknown]
Probab=99.64 E-value=4.3e-15 Score=128.40 Aligned_cols=157 Identities=21% Similarity=0.345 Sum_probs=123.4
Q ss_pred CCccccCCCCCCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEeeCCCCCCCC
Q 012451 43 VPTELNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRR 122 (463)
Q Consensus 43 ~p~~w~~~~~~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~~~~~~~~~ 122 (463)
..+++|..+ .++.+.|-..+++++-+ +.+.|+.|+- ..+-||||+|.+. |.++||++++..++++
T Consensus 27 P~V~LD~~h-MG~dVvilk~g~RicGt---------GG~lAtaPlv--QnKsYFevkiQ~t---G~WgiGlat~q~~l~~ 91 (197)
T KOG4030|consen 27 PTVRLDVGH-MGKDVVILKEGERICGT---------GGALATAPLV--QNKSYFEVKIQQT---GTWGIGLATKQSPLDK 91 (197)
T ss_pred CcEEeehhc-cCCcEEEEecCcEEecc---------Cceeeeeeee--cccceEEEEEeec---ceeeeeeeeccCcccc
Confidence 447889855 68888888888888744 4578888885 4588999999987 4899999999999988
Q ss_pred CC-CCCCCeeEEEcCCCcEEecCCCCccc-CC-CCCCCCeEEEEEeccCcEEEEEECCeeeccccccCCCCcccEEEEcc
Q 012451 123 QP-GWEANSCGYHGDDGLLYRGQGKGEAF-GP-TFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHS 199 (463)
Q Consensus 123 ~~-G~~~~S~gy~~~~G~~~~~~~~~~~y-g~-~~~~GDvIGcgid~~~~~ifFtkNG~~lg~af~~i~~~lyP~V~~~~ 199 (463)
.| |.+..||+... ||.++|++.....- .. --.+|||||+.+|. -++-|+.||+.+...+.++++++||+|-+..
T Consensus 92 ~p~g~d~~sw~~r~-dga~~hnnee~~r~pa~~~p~EGDvVGvayDH--VELnfY~NGKn~e~p~~gvRG~vyPvvYVdd 168 (197)
T KOG4030|consen 92 VPGGCDEKSWGIRD-DGAIAHNNEEVARMPATVFPEEGDVVGVAYDH--VELNFYVNGKNVEDPITGVRGPVYPVVYVDD 168 (197)
T ss_pred CCCCCcceeEEEcc-CCchhcccHHHhcCccccCCccCcEEEEEeee--EEEEEEEcCceecccccccccceeeEEEeCC
Confidence 76 68899999998 69999876332211 11 23789999999887 5699999999999999999999999999985
Q ss_pred CCeEEEEecCCCCCcCC-hhhh
Q 012451 200 QNEEVLVNFGQKKFAFD-LKEY 220 (463)
Q Consensus 200 ~~~~v~~NFG~~pF~f~-~~~~ 220 (463)
++.+.+-|. .|... |.+|
T Consensus 169 -sAILD~~f~--nF~h~PPpGF 187 (197)
T KOG4030|consen 169 -SAILDLKFK--NFTHAPPPGF 187 (197)
T ss_pred -ceEEEEEec--ccccCCCCCh
Confidence 567777664 34443 3444
No 12
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=99.54 E-value=5.6e-14 Score=139.28 Aligned_cols=158 Identities=13% Similarity=0.209 Sum_probs=128.0
Q ss_pred ccccCCCC--CCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEeeCCCCCCCC
Q 012451 45 TELNTINS--SGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRR 122 (463)
Q Consensus 45 ~~w~~~~~--~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~~~~~~~~~ 122 (463)
+.|-..+. +...+.+||+.+|++... .++..|.+...+. .|++||||+|..-..++.+.||++......+.
T Consensus 532 vawfqlt~spsqrdmilsnecatlsgss-----leyrtilgsiafs--kgvhywevtidrhdgnsdivigvaqpavnrnv 604 (699)
T KOG4367|consen 532 VAWFQLTPSPSQRDMILSNECATLSGSS-----LEYRTILGSIAFS--KGVHYWEVTIDRHDGNSDIVIGVAQPAVNRNV 604 (699)
T ss_pred eeeeeccCCchhhceeeecccceecccc-----cchheeeeecccc--cceeEEEEEEeccCCCCCceEEecchhhhhce
Confidence 45544332 345689999999997554 3688899988775 79999999999887778999999999998889
Q ss_pred CCCCCCCeeEEEcCCCcEE--ecCCCCcccCCCCCCCCeEEEEEeccCcEEEEEECCeeec-cccccCCCCcccEEEEcc
Q 012451 123 QPGWEANSCGYHGDDGLLY--RGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVG-AVYKDIKGPLFPTIAVHS 199 (463)
Q Consensus 123 ~~G~~~~S~gy~~~~G~~~--~~~~~~~~yg~~~~~GDvIGcgid~~~~~ifFtkNG~~lg-~af~~i~~~lyP~V~~~~ 199 (463)
.+|.|.+.|...-|.-+.| |+..+....--..+.|-|||+-+|.+.|++.||+|.+.-+ .||.++.|-+||++++..
T Consensus 605 mlgkdlhgwsmyvdgerswylhnethhnrvlggvtrgtvigvrldcdrgtmeytvndrqddsmaftnmrglyypafsvna 684 (699)
T KOG4367|consen 605 MLGKDLHGWSMYVDGERSWYLHNETHHNRVLGGVTRGTVIGVRLDCDRGTMEYTVNDRQDDSMAFTNMRGLYYPAFSVNA 684 (699)
T ss_pred eecccccceeEEEcCcceeEEeccccccccccccccccEEEEEEeccCCceEEEeccccCCceeeecccceeeeeeEecc
Confidence 9999999999998544444 4543333332357899999999999999999999999765 699999999999999995
Q ss_pred CCeEEEEecCC
Q 012451 200 QNEEVLVNFGQ 210 (463)
Q Consensus 200 ~~~~v~~NFG~ 210 (463)
+.+|++..|-
T Consensus 685 -nssitvhtgl 694 (699)
T KOG4367|consen 685 -NSSITVHTGL 694 (699)
T ss_pred -CceEEEecCC
Confidence 7899998886
No 13
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=99.53 E-value=2.6e-14 Score=154.26 Aligned_cols=128 Identities=22% Similarity=0.399 Sum_probs=112.2
Q ss_pred ceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEeeCCCCCCCCCCCCCCCeeEEEcCCCcEEecCCCCcccCCCCCC
Q 012451 77 DVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTT 156 (463)
Q Consensus 77 ~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~~~~~~~~~~~G~~~~S~gy~~~~G~~~~~~~~~~~yg~~~~~ 156 (463)
.+...|+.+......|+||||.+.... |.+.|||+++.+..+...|.|...|+|.|..++.||. ....||.+|++
T Consensus 1091 k~r~fr~eksyavkagkwyfefe~vt~---gdmrvgwarpgc~pd~elgadd~af~fdg~k~qrwhq--g~~~~grswq~ 1165 (5019)
T KOG2243|consen 1091 KFRFFRAEKSYAVKAGKWYFEFETVTA---GDMRVGWARPGCQPDQELGADDQAFAFDGFKAQRWHQ--GNEHFGRSWQA 1165 (5019)
T ss_pred eeEEEeeehhheeeccceEEEEEEeec---cceeecccCCCCCcchhhCCccceeeeccchhhhhhc--cccccccccCC
Confidence 477788888888889999999999887 4899999999999999999999999999999999997 35679999999
Q ss_pred CCeEEEEEeccCcEEEEEECCeeec------cccccC--CCCcccEEEEccCCeEEEEecCC
Q 012451 157 NDTVGGGINYASQEFFFTKNGSLVG------AVYKDI--KGPLFPTIAVHSQNEEVLVNFGQ 210 (463)
Q Consensus 157 GDvIGcgid~~~~~ifFtkNG~~lg------~af~~i--~~~lyP~V~~~~~~~~v~~NFG~ 210 (463)
||||||.||+++.+.-||+||..|- .||.+. ...+.|..++.- ...-+.|||.
T Consensus 1166 gdvvgcmi~l~d~sm~ftlngeili~~~gselaf~d~di~~gfipic~lg~-aqigrmn~g~ 1226 (5019)
T KOG2243|consen 1166 GDVVGCMIDLDDASMIFTLNGEILIDDKGSELAFADFDIEDGFIPICCLGL-AQIGRMNFGK 1226 (5019)
T ss_pred CCeEEEEEecccceEEEEEcCeEEEcCCCCeeeeccccccCCceeeeehhh-HhhcccccCC
Confidence 9999999999999999999999883 477764 678899988874 3567788885
No 14
>smart00757 CRA CT11-RanBPM. protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)
Probab=99.51 E-value=8.6e-14 Score=115.74 Aligned_cols=93 Identities=33% Similarity=0.334 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHhhhcC-CcchHHHHHHhhheeeecCC-CCCchhhcCCHhHHHHHHHHHHHHHHhcC-CCCCCCCCCc
Q 012451 344 ALEEAVKYGRMELAKYFG-LAGFEELVQDCVALLAYEKP-QESSVGYLLEDSQREIVADTVNAMILSTN-PNVKDLHGCL 420 (463)
Q Consensus 344 ~~~eAl~~ar~~l~~~~~-~~~~~~~l~~~~~LLay~~~-~~sp~~~ll~~~~R~~la~~vn~aIL~~~-~~~~~p~~~~ 420 (463)
++.+||+|||+++++|.. ++.+.++|+++|+||||+++ +.+|+++++++++|+.||++||++||... |.+ .
T Consensus 2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~------~ 75 (99)
T smart00757 2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKS------S 75 (99)
T ss_pred cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCC------C
Confidence 578999999999999974 22347899999999999999 78999999999999999999999999987 764 4
Q ss_pred chHHHHHHHHHHHHHHHHHhhc
Q 012451 421 HSCLERLLRQLTACCLERRSMN 442 (463)
Q Consensus 421 ~s~LE~l~~q~~~~q~~~~~~~ 442 (463)
+|.||.++++..+++..+...+
T Consensus 76 ~s~L~~~~~~~~~~~~~l~~~~ 97 (99)
T smart00757 76 ESPLEILLSAGLAALKTLLEKG 97 (99)
T ss_pred CChHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999998876543
No 15
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=3.6e-13 Score=133.33 Aligned_cols=170 Identities=17% Similarity=0.175 Sum_probs=135.5
Q ss_pred CCcchhHHHHHHHHhcChHHHHHHHHHhcCCCCCCcccccccCCCcchhhhhHHHHHHHHHHHHcCCHHHHHHHHHhh-C
Q 012451 238 PPNVSYGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNW-H 316 (463)
Q Consensus 238 ~~~~l~~LI~~yL~~~Gy~eta~af~~es~~~~~~~~~~~~~~~~e~~~~~~~~~R~~Ir~~Il~G~id~Al~~l~~~-~ 316 (463)
......+++.+.|+..||.+++.+++.|+++..+..+ -+.+.+++++|+|+.++..+... +
T Consensus 16 kk~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat------------------~klf~q~vlqg~w~q~v~~~~~i~~ 77 (519)
T KOG0293|consen 16 KKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTAT------------------TKLFDQQVLQGQWDQQVMSLVRISF 77 (519)
T ss_pred ccchhhHhHHHHHHhcCccccchhhHHhhCcccccch------------------HHHHHHHHHcccHHHHHHHHhhccC
Confidence 3445789999999999999999999999998665432 34789999999999999888777 5
Q ss_pred CcchhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHHHHHHhhheeeecCCCCCc---hhhcCCHh
Q 012451 317 PWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALLAYEKPQESS---VGYLLEDS 393 (463)
Q Consensus 317 p~ll~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~~l~~~~~LLay~~~~~sp---~~~ll~~~ 393 (463)
+. .++.+ .+.|+|.+|+|+|+++.|.+.+|+...|....++. ...+.++++.+-|++++...+- .... ...
T Consensus 78 ~d-e~~~~-ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr---~~~kk~~el~~sll~sn~~~~ne~~~~~~-~~n 151 (519)
T KOG0293|consen 78 ED-ERNRK-EAMFLVNKQIFLEFLKTGSISHALPVLRNPVLYLR---KNKKKFHELASSLLVSNDQFSNEENTTAQ-LNN 151 (519)
T ss_pred cc-hhhhH-HHHHHHHHHHHHHHHhhccHhhhhHhhhcchhhhh---hhHHHHHHHHHHHhccccccccccchhhh-hch
Confidence 55 44443 79999999999999999999999999998777774 4457888988888887543321 1122 234
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 012451 394 QREIVADTVNAMILSTNPNVKDLHGCLHSCLERLLRQLTACCLER 438 (463)
Q Consensus 394 ~R~~la~~vn~aIL~~~~~~~~p~~~~~s~LE~l~~q~~~~q~~~ 438 (463)
.|.+|.+++...|.+.. |+|+.|||+|++||...|...
T Consensus 152 ~R~~ll~elskyi~p~i-------llP~rRLehLl~qAv~~Q~d~ 189 (519)
T KOG0293|consen 152 ERDKLLDELSKYIPPNI-------LLPKRRLEHLLEQAVKYQRDS 189 (519)
T ss_pred hHHHHHHHHHhhCCHhh-------cCChHHHHHHHHHHHHHHHhH
Confidence 68999999999994433 557999999999999998864
No 16
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=99.39 E-value=3e-14 Score=148.46 Aligned_cols=195 Identities=23% Similarity=0.356 Sum_probs=156.1
Q ss_pred eEEEcCCCcEEecCCCCcccCCCCCCCCeEEEEEeccCcEEEEEECCeeeccccccCCCCcccEEEEccCCeEEEEecCC
Q 012451 131 CGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQ 210 (463)
Q Consensus 131 ~gy~~~~G~~~~~~~~~~~yg~~~~~GDvIGcgid~~~~~ifFtkNG~~lg~af~~i~~~lyP~V~~~~~~~~v~~NFG~ 210 (463)
+|||++||..+...+.+..||+.++.||+|||+||..+++.|||+||..+|++|......+||.|++..++..+..|||.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~i~~~~~~~~~~~~~~~~~~~~gi~f~~~~~~~~~dvg~~~~~~~~~~N~~~ 80 (469)
T KOG1477|consen 1 YGYHGDDGNFFLKSGDGQLYGPVFTTGDVIPCEVNTINGSDFFTKNGPDMGIAFYTPPALLYHDVGVVQAGEPLPANFGI 80 (469)
T ss_pred CCCcccchhhhhhcccccccCCcCCccccccceEeccCCceeEEEEcCCcceeeecCccccCCCcceeeCCCCCCccccc
Confidence 47999999999988899999999999999999999999999999999999999998877799999999999999999999
Q ss_pred CCCcCChhhhhHHHHHHHhhhhhhcCCCCc---chhHHHHHHHHhcChHHH-HHHHHHhcCCCCCCcccccccCCCcchh
Q 012451 211 KKFAFDLKEYEAQERMKQQMTIEKISLPPN---VSYGLVRSYLQHYGYEDT-LNSFDLAGKTTVPPVFVAQENGFNEQDN 286 (463)
Q Consensus 211 ~pF~f~~~~~~~~~~~~~~~~I~~~~l~~~---~l~~LI~~yL~~~Gy~et-a~af~~es~~~~~~~~~~~~~~~~e~~~ 286 (463)
.||.|++.+|....+.++...++..+++.. .++ +..|....|.... +..+.++.+.+-+--+
T Consensus 81 ~~Fe~~i~d~g~~~~i~i~~~~~~~~~~~~~g~~~~--s~~y~g~~g~l~~~~~~~~~~~~~~~~~~D------------ 146 (469)
T KOG1477|consen 81 YYFEFDILDYGIEGRIKIGFLIDSFSIIESEGYTMN--SLGYHGNSGLLDNGGAELGEEFGPTFTTGD------------ 146 (469)
T ss_pred ceeeeeHHHhhhhhceEEEEEecccccccccchhhh--hhcccCCchhhhhhhhhhchhhcCCCCccc------------
Confidence 999999999999999888877776665422 233 6666666665555 5555555442211101
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHhhCCcchhcCCCceeehhhhHHHHHHH
Q 012451 287 VYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELV 340 (463)
Q Consensus 287 ~~~~~~R~~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~s~l~F~L~~qkfIEli 340 (463)
..-..++...++-.+.++-.++.......+|.++..+. .+.+.+.+.++|++-
T Consensus 147 ~ig~~~~~~~q~i~~t~~g~~~~~~~~~~~~~~~~~~~-n~~~~~s~~~~I~~~ 199 (469)
T KOG1477|consen 147 EIGCGINEITQEIFFTKNGTEVGEIIKPLSPDLLEENG-NLAWLFSPNEEVEVN 199 (469)
T ss_pred eeeeccchhhheeeeccCcccccccccccccccccccc-ceeeEeccCceeeee
Confidence 11233445577778888888888899999999999876 688889898888874
No 17
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=99.14 E-value=4.4e-11 Score=89.36 Aligned_cols=55 Identities=38% Similarity=0.622 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhCCcchhcCCCceeehhhhHHHHHHHhcCCH
Q 012451 290 LNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGAL 345 (463)
Q Consensus 290 ~~~R~~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~s~l~F~L~~qkfIElir~~~~ 345 (463)
+.+|.+|+++|+.|+|++|++|++.++|.+.++++ .+.|.|++|+|||||+.++.
T Consensus 2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 35688999999999999999999999999999885 89999999999999998754
No 18
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=98.89 E-value=3.9e-10 Score=122.88 Aligned_cols=143 Identities=20% Similarity=0.360 Sum_probs=108.3
Q ss_pred cceEEEEecccccCCC-----CeEEEEEEEEecC-----CCCeEEEEeeCCC-CCC---------CCCCCCCCCeeEEEc
Q 012451 76 HDVGVVQANKPAPVKR-----LVYYFEIYVKDAG-----AKGQIAIGFTSES-FKM---------RRQPGWEANSCGYHG 135 (463)
Q Consensus 76 ~~~~~vra~~~i~~~~-----g~~YfEV~I~~~~-----~~~~i~IG~~~~~-~~~---------~~~~G~~~~S~gy~~ 135 (463)
+++.++|.|..+.... .+||||.-|.... +..++.|||++.. +.. ...+|.|-.||||+|
T Consensus 656 n~vss~rpniflgvaegsaqykkwy~el~id~~dpf~tae~thlrvgwass~gyap~pggge~wggngvgddl~sygfdg 735 (5019)
T KOG2243|consen 656 NDVSSIRPNIFLGVAEGSAQYKKWYFELIIDHTDPFLTAEATHLRVGWASSEGYAPCPGGGEEWGGNGVGDDLFSYGFDG 735 (5019)
T ss_pred hhhhhcCCceeEeeccchHHHHHHHHHHhhhcCCcceecccceeeeeeeccCCCCCCCCCcccccCCCccchhhhcCCCc
Confidence 4688899988876544 4899999887652 3468999999763 221 234667778898877
Q ss_pred CCCcEEecCC---CCcccCCCCCCCCeEEEEEeccCcEEEEEECCeeeccccccC--CCCcccEEEEccCCeEEEEecCC
Q 012451 136 DDGLLYRGQG---KGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDI--KGPLFPTIAVHSQNEEVLVNFGQ 210 (463)
Q Consensus 136 ~~G~~~~~~~---~~~~yg~~~~~GDvIGcgid~~~~~ifFtkNG~~lg~af~~i--~~~lyP~V~~~~~~~~v~~NFG~ 210 (463)
-.+|++.- ...+-..-....|||.|++|+....|+|.+||+.+.-.|++. .+-+||.+++. .|.+|++-.|+
T Consensus 736 --lhlwsg~i~r~vas~nqhllrsddvisccldl~~psisfringqpvqgmfenfn~dglffpv~sfs-agikvrfllgg 812 (5019)
T KOG2243|consen 736 --LHLWSGCIARAVASPNQHLLRSDDVISCCLDLGAPSISFRINGQPVQGMFENFNIDGLFFPVMSFS-AGIKVRFLLGG 812 (5019)
T ss_pred --chhhcccchhhhcChhhhhhcccchhhhhhhcCCCceEEEECCccchhHHhcCCCcceeeeeEeec-cCeEEEEEecc
Confidence 46676531 112222356789999999999999999999999998889876 88999999998 47899998887
Q ss_pred --CCCcCC-hhhhh
Q 012451 211 --KKFAFD-LKEYE 221 (463)
Q Consensus 211 --~pF~f~-~~~~~ 221 (463)
..|+|- |.+|.
T Consensus 813 rhgefkflpp~gya 826 (5019)
T KOG2243|consen 813 RHGEFKFLPPPGYA 826 (5019)
T ss_pred cccceeecCCCCCc
Confidence 489995 45663
No 19
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.96 E-value=7.5e-06 Score=51.23 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=23.4
Q ss_pred chhHHHHHHHHhcChHHHHHHHHHhc
Q 012451 241 VSYGLVRSYLQHYGYEDTLNSFDLAG 266 (463)
Q Consensus 241 ~l~~LI~~yL~~~Gy~eta~af~~es 266 (463)
.+++||.+||.++||.+||.+|.+|+
T Consensus 2 ~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 2 ELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 48999999999999999999999985
No 20
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.48 E-value=0.00067 Score=66.46 Aligned_cols=178 Identities=17% Similarity=0.184 Sum_probs=115.8
Q ss_pred CCCcchhHHHHHHHHhcChHHHHHHHHHhcCCCCCCcccccccCCCcchhhhhHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 012451 237 LPPNVSYGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWH 316 (463)
Q Consensus 237 l~~~~l~~LI~~yL~~~Gy~eta~af~~es~~~~~~~~~~~~~~~~e~~~~~~~~~R~~Ir~~Il~G~id~Al~~l~~~~ 316 (463)
+...+.-|||.+||..+....|++.|.+|.+..+..++ -...+-..|-+|.||..+..+.++.
T Consensus 5 iessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVD-----------------Svd~Fv~dI~sG~WD~VL~~vqsLK 67 (508)
T KOG0275|consen 5 IESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVD-----------------SVDGFVNDINSGHWDTVLKTVQSLK 67 (508)
T ss_pred eecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeech-----------------hHHHHHHhcccCchHHHHHHHHhcc
Confidence 34456779999999999999999999999986553332 1235778899999999999998763
Q ss_pred CcchhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcC-CcchHHHHHHhhheee--ecCCCCCchhhcCCHh
Q 012451 317 PWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFG-LAGFEELVQDCVALLA--YEKPQESSVGYLLEDS 393 (463)
Q Consensus 317 p~ll~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~-~~~~~~~l~~~~~LLa--y~~~~~sp~~~ll~~~ 393 (463)
|= + .-.-.|..|-.+|||.-..+..|-..+|+. .|... .....+..-++-.||. |-||. ..|++--.+.
T Consensus 68 --LP-~---kkL~dLYEqivlEliELREL~tAR~~lRQT-dpM~~lKQ~~peRy~~lE~ll~R~YFDp~-EaY~dssKEk 139 (508)
T KOG0275|consen 68 --LP-D---KKLIDLYEQIVLELIELRELGTARSLLRQT-DPMIMLKQIQPERYIRLENLLNRSYFDPR-EAYGDSSKEK 139 (508)
T ss_pred --Cc-h---hHHHHHHHHHHHHHHHHHhhhHHHHHHhcc-CceehhhccChHHHHHHHHHhcccccChh-hhcCcchHHH
Confidence 21 2 234678899999999876666666666642 22211 1111123333334443 44543 2355543445
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCCceeEe
Q 012451 394 QREIVADTVNAMILSTNPNVKDLHGCLHSCLERLLRQLTACCLERRSMNGDQGEAFHL 451 (463)
Q Consensus 394 ~R~~la~~vn~aIL~~~~~~~~p~~~~~s~LE~l~~q~~~~q~~~~~~~~~~~~~~~~ 451 (463)
+|..+|..+...+ . ++|+|||-.|+-||..-|..+.-+ -+|-.|+|
T Consensus 140 rRa~IAQ~ls~EV---~-------VVppSRLlaLlGQaLKWQqHQGLL--PPGt~iDL 185 (508)
T KOG0275|consen 140 RRAVIAQALSGEV---H-------VVPPSRLLALLGQALKWQQHQGLL--PPGTTIDL 185 (508)
T ss_pred HHHHHHHHhcCce---E-------EcChHHHHHHHHHHhhhHhhcCCC--CCCceeee
Confidence 7788887776544 1 236899999999998877765322 34555554
No 21
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.36 E-value=0.00022 Score=46.52 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=26.8
Q ss_pred cchhHHHHHHHHhcChHHHHHHHHHhcCC
Q 012451 240 NVSYGLVRSYLQHYGYEDTLNSFDLAGKT 268 (463)
Q Consensus 240 ~~l~~LI~~yL~~~Gy~eta~af~~es~~ 268 (463)
..++++|.+||.+.||.+||.+|.+|++.
T Consensus 4 ~~l~~lI~~yL~~~g~~~ta~~l~~e~~~ 32 (34)
T smart00667 4 SELNRLILEYLLRNGYEETAETLQKESGL 32 (34)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHhCC
Confidence 45889999999999999999999999885
No 22
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=92.93 E-value=0.53 Score=36.36 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=34.5
Q ss_pred CCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEec--CCCCeEEEEeeCC
Q 012451 53 SGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDA--GAKGQIAIGFTSE 116 (463)
Q Consensus 53 ~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~--~~~~~i~IG~~~~ 116 (463)
++..+.|++|+.+++.... ..-+.|.++.|+... =.|+|+|... .-.|.+.||+++.
T Consensus 9 ~G~nV~L~~~~~~A~R~~s----f~~giVFS~rPl~~~---E~~~v~I~~~~~~wsG~L~~GvT~~ 67 (69)
T PF07177_consen 9 HGKNVRLSNDGTVARRVSS----FNNGIVFSSRPLRIG---EKFEVRIDEVEPSWSGSLRIGVTSC 67 (69)
T ss_dssp E-TTEEE-SSS-EEEEST-----SSS-EEEESS-B-TT----EEEEEEEEE-SSSSS--EEEEESS
T ss_pred cCCCEEEcCCCeEEEeccc----CCceEEEecCCccCC---CEEEEEEEecCCCceeEEEEeeEcc
Confidence 4678999999999987332 246899999999643 2566666654 3457999999874
No 23
>smart00588 NEUZ domain in neuralized proteins.
Probab=92.77 E-value=3.2 Score=35.82 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=62.7
Q ss_pred CCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEec--CCCCeEEEEeeCCCCC---CCCCC---
Q 012451 53 SGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDA--GAKGQIAIGFTSESFK---MRRQP--- 124 (463)
Q Consensus 53 ~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~--~~~~~i~IG~~~~~~~---~~~~~--- 124 (463)
++..+.|++|+.+++..... ..-+.|.++.|+... -+ |+|+|... +-.|.+.||+.+.+-. ....|
T Consensus 9 ~G~ni~l~~~~~~A~R~~~~---f~~givFS~rPl~~~-E~--~~v~i~~~~~~w~G~l~~G~Ts~dP~~l~~~~lp~~~ 82 (123)
T smart00588 9 HGSNIRLSDSGRVARRSASD---FCNALVFSARPLRIN-EL--FEVKIEKVVRKWSGALRFGVTTCDPATLRPASLPTNA 82 (123)
T ss_pred cCCCeEECCCCcEEEcccCC---cCceEEecCCCCcCC-CE--EEEEEEEecCCccCceEEEEecCCcccccCccCcccC
Confidence 57789999999999865431 236789999999643 34 45555543 4457899999986321 11112
Q ss_pred --C-C-CCCeeEEEcCCCcEEecCCCCcccCCC-CCCCCeEEEEEeccCcEEEEEEC
Q 012451 125 --G-W-EANSCGYHGDDGLLYRGQGKGEAFGPT-FTTNDTVGGGINYASQEFFFTKN 176 (463)
Q Consensus 125 --G-~-~~~S~gy~~~~G~~~~~~~~~~~yg~~-~~~GDvIGcgid~~~~~ifFtkN 176 (463)
+ | ..+.|.... +.+ ...||+++.-++- .|.++|.+|
T Consensus 83 ~~dl~~~~g~wv~~~---------------~~~~~~~g~~l~f~~~~-~G~v~~~vn 123 (123)
T smart00588 83 CPDLVDMSGFWAKAL---------------GEGLAEQGGILGLDVLA-EGEVVGVIN 123 (123)
T ss_pred cccccccCCcceEEC---------------ChhhccCCCEEEEEECC-CceEEEEeC
Confidence 1 1 122333322 122 2577888877764 477777776
No 24
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification]
Probab=92.47 E-value=0.033 Score=60.11 Aligned_cols=85 Identities=31% Similarity=0.434 Sum_probs=67.6
Q ss_pred CCCCCCCeeEEEcCCCcEEecCCCCcccCCCCCCCCeEEEEEecc---CcEEEEEECCeeeccccccC----CC-CcccE
Q 012451 123 QPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYA---SQEFFFTKNGSLVGAVYKDI----KG-PLFPT 194 (463)
Q Consensus 123 ~~G~~~~S~gy~~~~G~~~~~~~~~~~yg~~~~~GDvIGcgid~~---~~~ifFtkNG~~lg~af~~i----~~-~lyP~ 194 (463)
..+.+..+++|...+.+-+.. ....|+++|...|+|||.+++. .-.+.|.+||..++.+|..- .+ .+||.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~f~e~~~i~c~~~~~~~d~~~l~~~k~~~~~~~~~~l~~~~~~~~~~~p~ 197 (558)
T KOG2242|consen 120 LLGDEPFSYGYSETGKKSCNS--EVEKYGEKFPENDVIGCFADFEILDEVELSYEKNGQDLGESFLLSKEDLGGQALYPH 197 (558)
T ss_pred ccccccccccccccccchhhH--HHHHHHhhcccccccchhhcccccccCcchhhhccchhhhhhcchhhhccCcccCcc
Confidence 456666788888865555443 5678999999999999999985 46899999999999998643 33 59999
Q ss_pred EEEccCCeEEEEecCCC
Q 012451 195 IAVHSQNEEVLVNFGQK 211 (463)
Q Consensus 195 V~~~~~~~~v~~NFG~~ 211 (463)
|--. .+.|..|||++
T Consensus 198 vl~~--~~~ve~~f~~~ 212 (558)
T KOG2242|consen 198 VLRK--NCAVEGNFGQK 212 (558)
T ss_pred cccC--cceeccccccc
Confidence 9877 46999999985
No 25
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.28 E-value=0.45 Score=44.05 Aligned_cols=137 Identities=16% Similarity=0.144 Sum_probs=78.2
Q ss_pred chhHHHHHHHHhcChHHHHHHHHHhcCCCCCCcccccccCCCcchhhhhHHHHHHHHHHHHcCCHHHHHHHHHhhCCcch
Q 012451 241 VSYGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIV 320 (463)
Q Consensus 241 ~l~~LI~~yL~~~Gy~eta~af~~es~~~~~~~~~~~~~~~~e~~~~~~~~~R~~Ir~~Il~G~id~Al~~l~~~~p~ll 320 (463)
..++||.+||+-.|+.-|+++|+.|..... +.+... + ....++.++|...|++.--++-..+.-.|+
T Consensus 7 ~tDelvReYL~frgf~~tLkalD~E~~~~K-------e~~frv----d--rivdq~~~a~q~~Dl~aLr~~W~~l~~r~F 73 (241)
T KOG1333|consen 7 RTDELVREYLLFRGFTHTLKALDAEIKADK-------EKGFRV----D--RIVDQLQQAMQVYDLAALRDYWSYLERRLF 73 (241)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHHhhhh-------hcCCcH----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999998876321 111110 0 123467888888888764433222222232
Q ss_pred hcC----C---CceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHHHHHHhhheeeecCCCC-CchhhcCCH
Q 012451 321 QDD----K---SSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALLAYEKPQE-SSVGYLLED 392 (463)
Q Consensus 321 ~~~----~---s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~~l~~~~~LLay~~~~~-sp~~~ll~~ 392 (463)
.+- . ..++=.|.+.-++-.+...+.++|=+|-++.-+.+.+++ +-.+-+.+=-.+..+. .|++..++.
T Consensus 74 s~Le~~y~~~~~kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lqnq~----eWkDWF~fPf~~~a~~tppf~~~F~k 149 (241)
T KOG1333|consen 74 SRLEDIYRPTIHKLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQNQA----EWKDWFVLPFLPSAKDTPPFRKYFDK 149 (241)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhcch----hhhhheecccCCCCCCCccHHHHHHh
Confidence 210 0 012223344445556677888898888887666665444 3334443333333333 457666655
Q ss_pred hH
Q 012451 393 SQ 394 (463)
Q Consensus 393 ~~ 394 (463)
..
T Consensus 150 tw 151 (241)
T KOG1333|consen 150 TW 151 (241)
T ss_pred hh
Confidence 43
No 26
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification]
Probab=82.24 E-value=0.96 Score=49.03 Aligned_cols=90 Identities=12% Similarity=-0.019 Sum_probs=71.5
Q ss_pred CCeeEEEcCCCcEEecCCCCcccCCCCCCCCeEEEEEeccCcEEEEEECCeeeccccccC-----CCCcccEEEEccCCe
Q 012451 128 ANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDI-----KGPLFPTIAVHSQNE 202 (463)
Q Consensus 128 ~~S~gy~~~~G~~~~~~~~~~~yg~~~~~GDvIGcgid~~~~~ifFtkNG~~lg~af~~i-----~~~lyP~V~~~~~~~ 202 (463)
..++++++.....++. ....++..+.. |+|+|.++.....+ ++.|+...+.++... ....+|+|++.. +.
T Consensus 8 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~d~~~c~~~-~~~~~~~~~~~~~~e~~~~~~~~~r~a~~~~~-~~ 82 (558)
T KOG2242|consen 8 GFSYFEDGEDRRAWSP--QPPAEEDEWHF-DTIVCIDTYNCDLH-KYRRDRSSGYALTKERFAGPWDGARAAYSVSR-GE 82 (558)
T ss_pred ccccccccchhhhccC--CCCcccccccc-ceeeechhhhhhhh-hcccccccccccchhhccccCcccceeeeecC-Cc
Confidence 5678888876676664 56788999999 99999999998888 999999999988754 457889999884 56
Q ss_pred EEEEecCCCCCcCChhhhhHHH
Q 012451 203 EVLVNFGQKKFAFDLKEYEAQE 224 (463)
Q Consensus 203 ~v~~NFG~~pF~f~~~~~~~~~ 224 (463)
....|++..||.+. ++...+
T Consensus 83 ~~~~~~~~e~~~~~--~~~~~~ 102 (558)
T KOG2242|consen 83 VCFEMRINEPEEVP--HFQPLE 102 (558)
T ss_pred chhhcccccccccC--CCCccc
Confidence 67789999898887 444333
No 27
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=80.53 E-value=2.7 Score=33.53 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=25.4
Q ss_pred chhHHHHHHHHhcChHHHHHHHHHhcCCC
Q 012451 241 VSYGLVRSYLQHYGYEDTLNSFDLAGKTT 269 (463)
Q Consensus 241 ~l~~LI~~yL~~~Gy~eta~af~~es~~~ 269 (463)
.++.||++||...||.=|+..|..|+|..
T Consensus 20 Li~eLIrEyLef~~l~~TlsVf~~Es~~~ 48 (81)
T PF09398_consen 20 LINELIREYLEFNNLDYTLSVFQPESGQP 48 (81)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHcCCccHHHHHhhccCCC
Confidence 57999999999999999999999999964
No 28
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=74.34 E-value=5.5 Score=29.46 Aligned_cols=56 Identities=20% Similarity=0.177 Sum_probs=35.5
Q ss_pred HHHcCCHHHHHHHHHhhCCcchhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 012451 299 LIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYF 360 (463)
Q Consensus 299 ~Il~G~id~Al~~l~~~~p~ll~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~ 360 (463)
+|..|++++|++.+.+. ++.+|......+ .--.=+++.|+.++|.+...+.+....
T Consensus 1 ll~~~~~~~A~~~~~~~----l~~~p~~~~~~~--~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKA----LQRNPDNPEARL--LLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHTTHHHHHHHHHHHH----HHHTTTSHHHHH--HHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ChhccCHHHHHHHHHHH----HHHCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 47789999999999864 333332222222 122223678999999999887666553
No 29
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=67.06 E-value=4.9 Score=37.00 Aligned_cols=63 Identities=29% Similarity=0.321 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhh--CCcchhcC----------CCceeehhhhHHHHHHHhcCCHHHHHHHHHHH
Q 012451 291 NQRKTLRQLIRNGEIDAAFDKLRNW--HPWIVQDD----------KSSTCFLLHCQKFIELVRVGALEEAVKYGRME 355 (463)
Q Consensus 291 ~~R~~Ir~~Il~G~id~Al~~l~~~--~p~ll~~~----------~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~ 355 (463)
.+|+..|++|..|+=+.|+-+|... ...|+..- -++|+|..-.+++++-+++|+ +||+-.++.
T Consensus 41 ~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN--~~lkkl~~~ 115 (209)
T KOG2910|consen 41 AERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGN--EALKKLQQE 115 (209)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHh
Confidence 4578889999999999998877532 22344321 147999999999999999885 666655543
No 30
>KOG4625 consensus Notch signaling protein Neuralized, Nuez domain [Signal transduction mechanisms]
Probab=59.99 E-value=44 Score=36.06 Aligned_cols=120 Identities=18% Similarity=0.130 Sum_probs=73.2
Q ss_pred CCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEecC--CCCeEEEEeeCCCCC------C-CCCC
Q 012451 54 GGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAG--AKGQIAIGFTSESFK------M-RRQP 124 (463)
Q Consensus 54 ~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~--~~~~i~IG~~~~~~~------~-~~~~ 124 (463)
+..+.|++||+++.-... ..-+.+.+++|+... =-|||+|.... =+|.+.+||+..+-. . ...|
T Consensus 109 GsNi~I~~~g~~A~RraS----F~dAItFSnRPl~~~---E~f~v~ieki~~~WSG~irlGvT~~dPe~i~~~~~tfa~P 181 (595)
T KOG4625|consen 109 GSNIRIDNSGTLAKRRAS----FCDAITFSNRPLRIG---ELFLVEIEKIERGWSGHLRLGVTSLDPEDIRPSPETFACP 181 (595)
T ss_pred CcceEECCCcceeehhhh----hcceeeeccCcCCCC---cEEEEEEEEeccCccceeEeecccCCHhhccCCCccccCc
Confidence 557999999999986432 246788999999642 25777777653 358999999875311 1 1111
Q ss_pred --CCCCCeeEEEcCCCcEEecCCCCcccCCCCCCCCeEEEEEeccCcEEEEEECCeeeccccc
Q 012451 125 --GWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYK 185 (463)
Q Consensus 125 --G~~~~S~gy~~~~G~~~~~~~~~~~yg~~~~~GDvIGcgid~~~~~ifFtkNG~~lg~af~ 185 (463)
-.-.+.|.|.- ++.|.+.+.-.. -...++-.|+.++|-...-.||| +|...+.|..
T Consensus 182 DL~nl~G~Wa~al--~e~~~n~~~i~~--~~v~~~g~v~~~in~~~~~~fft-gi~~~~~a~~ 239 (595)
T KOG4625|consen 182 DLVNLSGFWAKAL--PETYRNEGNILA--FAVNPKGRVFYGINGSGKMHFFT-GIRTQGHACS 239 (595)
T ss_pred chhccCchhhhhc--chhhcccccchh--hhhcCCCcceeeecCcceEEEee-cccccchhhc
Confidence 11145677764 555544322111 12345556788888765555555 7777766543
No 31
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=56.04 E-value=1.1e+02 Score=32.39 Aligned_cols=78 Identities=18% Similarity=0.174 Sum_probs=54.9
Q ss_pred cchhHHHHHHHHhcChHHHHHHHHHhcCCCCCCcccccccCCCcchhhhhHHHHHHHHHHHHcCCHHHHHHHHHhhCCcc
Q 012451 240 NVSYGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWI 319 (463)
Q Consensus 240 ~~l~~LI~~yL~~~Gy~eta~af~~es~~~~~~~~~~~~~~~~e~~~~~~~~~R~~Ir~~Il~G~id~Al~~l~~~~p~l 319 (463)
.....-|..||...||.|.|-.|..+ .++++.=||..|+++.|++.+.+..
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D--------------------------~~~rFeLAl~lg~L~~A~~~a~~~~--- 345 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD--------------------------PDHRFELALQLGNLDIALEIAKELD--- 345 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS---------------------------HHHHHHHHHHCT-HHHHHHHCCCCS---
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC--------------------------hHHHhHHHHhcCCHHHHHHHHHhcC---
Confidence 44577899999999999999988633 1457889999999999999876542
Q ss_pred hhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHH
Q 012451 320 VQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRM 354 (463)
Q Consensus 320 l~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~ 354 (463)
++ ..++|=--+-+++|+++-|.++.++
T Consensus 346 ---~~-----~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 ---DP-----EKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp ---TH-----HHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred ---cH-----HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 11 1334444455778888887776664
No 32
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=53.40 E-value=20 Score=31.58 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=38.2
Q ss_pred ceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHHHHHHhhhe
Q 012451 326 STCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVAL 375 (463)
Q Consensus 326 ~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~~l~~~~~L 375 (463)
.+.|=+.+.-|++||..|..++|.+|..+.-..+. ..+...|+++..+
T Consensus 39 ~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~--~~~~~~i~~L~~i 86 (142)
T PF04494_consen 39 RLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFE--DSHQEDIEKLSSI 86 (142)
T ss_dssp GGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGH--GHGHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHh--HHHHHHHHHHHhh
Confidence 47888999999999999999999999998666664 4566778888764
No 33
>KOG4625 consensus Notch signaling protein Neuralized, Nuez domain [Signal transduction mechanisms]
Probab=52.82 E-value=91 Score=33.77 Aligned_cols=158 Identities=17% Similarity=0.126 Sum_probs=90.9
Q ss_pred CCCCCccccCCCCCCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEecCC--CCeEEEEeeCCC
Q 012451 40 EEEVPTELNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGA--KGQIAIGFTSES 117 (463)
Q Consensus 40 ~~~~p~~w~~~~~~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~--~~~i~IG~~~~~ 117 (463)
....|.+|... ++..+.+++|+..++-.... ...+-|.+++|+... --|||++...+. .+...+|+.+.+
T Consensus 289 ~~~~~~rfH~~--~G~nv~l~~d~tvA~r~~~~---~s~glVFterPlr~~---e~~~Ikv~~v~~l~~G~L~lGvT~~d 360 (595)
T KOG4625|consen 289 GLDGPLRFHAT--KGANVRLSDDGTVARREHGA---YSQGLVFTERPLRVG---EKLEIKVTRVGRLYAGALSLGVTTCD 360 (595)
T ss_pred CCCCccceeee--ccccccccCCCccccccccc---ccceEEEEecccccC---CEEEEEeeecchhhcchhhccceecC
Confidence 33446677752 46789999999887744322 246789999998543 468999987643 357888888765
Q ss_pred CCCCCCCCCCCCeeEEEcCCCcEEecCCCCcccCCCCCCCCeEEEEEeccCcEEEEEECCeeecccc-------------
Q 012451 118 FKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVY------------- 184 (463)
Q Consensus 118 ~~~~~~~G~~~~S~gy~~~~G~~~~~~~~~~~yg~~~~~GDvIGcgid~~~~~ifFtkNG~~lg~af------------- 184 (463)
...- .||.-..|-..--+.-..|.. ..........||.+++.++- .|+|.+.+||...++.-
T Consensus 361 pg~l-~p~~Lp~sp~~l~~rpe~w~~---s~~ia~~~~~~~~~~~~v~~-~Gel~~~~~g~~a~~~l~vD~sl~l~~~~~ 435 (595)
T KOG4625|consen 361 PGTL-RPADLPFSPEALVDRPEYWVV---SCDIAGPPHVGDILQLVVNA-YGELELSHNGAAAGVQLCVDASLPLWMLFD 435 (595)
T ss_pred cccc-ccCCCCCChhhhccchhhhhh---eeecccCcccCceeeEEEcC-CCcEEEeecCCceEEEEEecCceeeeeecc
Confidence 4211 122111111111111111110 11222345677777777664 46688888877665421
Q ss_pred ------ccCCCCcccEEEEccCCeEEEEecCC
Q 012451 185 ------KDIKGPLFPTIAVHSQNEEVLVNFGQ 210 (463)
Q Consensus 185 ------~~i~~~lyP~V~~~~~~~~v~~NFG~ 210 (463)
..+...+||..-.+.+-..|+++-|.
T Consensus 436 ~~g~~as~~~~~~~~v~~~y~~~~~vti~s~~ 467 (595)
T KOG4625|consen 436 VYGTIASIRILGVLPVMDSYGPAERVTIPSSP 467 (595)
T ss_pred ccchhhhhhhccccccccccCcccceeeccCC
Confidence 11134677777777666677777664
No 34
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.74 E-value=43 Score=32.75 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=47.6
Q ss_pred cCCHHHHHHHHHhhCCcchhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcc
Q 012451 302 NGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAG 364 (463)
Q Consensus 302 ~G~id~Al~~l~~~~p~ll~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~ 364 (463)
.|++++|++..+. ++++++ ..+..+++|..=+--+|+..+||+-..+.+..|-.+.+
T Consensus 99 ~~~~~~A~e~y~~----lL~ddp--t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~E 155 (289)
T KOG3060|consen 99 TGNYKEAIEYYES----LLEDDP--TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQE 155 (289)
T ss_pred hhchhhHHHHHHH----HhccCc--chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH
Confidence 6999999999876 677765 78999999998887889988999999998888865543
No 35
>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E.
Probab=49.84 E-value=19 Score=25.52 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=18.2
Q ss_pred cccCCCCCCCceEEcCCCcEEEEccc
Q 012451 46 ELNTINSSGGFLVVSPDKLSVKYTSV 71 (463)
Q Consensus 46 ~w~~~~~~~~~~~ls~d~l~v~~~~~ 71 (463)
++|+ +..+..|.||+|+.+|++...
T Consensus 2 tlDp-~TAh~~L~lS~d~k~v~~~~~ 26 (49)
T PF13765_consen 2 TLDP-NTAHPSLVLSEDGKSVRYSEQ 26 (49)
T ss_dssp EB-T-TTS-TTEEEETTSSEEEE-SS
T ss_pred EECc-ccCCCCeEECCCCeEEEEccC
Confidence 4677 447889999999999999764
No 36
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=48.53 E-value=2.3e+02 Score=31.37 Aligned_cols=126 Identities=24% Similarity=0.312 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCCcchhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHHHHHH
Q 012451 292 QRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQD 371 (463)
Q Consensus 292 ~R~~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~~l~~ 371 (463)
...+++..+.+|..+.|++.+..+-|.+++. +-|....-.+. ++.+.+++|+...+..+.+...+=.+-..++.
T Consensus 188 ~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk----la~~e~ka~l~--~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 188 LLYQNQILIEAGSLQKALEHLLDNEKQIVDK----LAFEETKADLL--MKLGQLEEAVKVYRRLLERNPDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhhhhHHHHH----HHHhhhHHHHH--HHHhhHHhHHHHHHHHHhhCchhHHHHHHHHH
Confidence 3456788899999999999999999988864 44555444443 34568999999999998887543333344444
Q ss_pred hhh--------e-eeecC-----CC-CC----chhhcCCHhHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHH
Q 012451 372 CVA--------L-LAYEK-----PQ-ES----SVGYLLEDSQREIVADTVNAMILSTNPNVKDLHGCLHSCLERLLRQ 430 (463)
Q Consensus 372 ~~~--------L-Lay~~-----~~-~s----p~~~ll~~~~R~~la~~vn~aIL~~~~~~~~p~~~~~s~LE~l~~q 430 (463)
+++ + .+|.. |. .+ |+.-+-+.+.++.|.+-++..+=..-|.. -+.|+.|.+.
T Consensus 262 ~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v-------f~dl~SLyk~ 332 (700)
T KOG1156|consen 262 ALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV-------FKDLRSLYKD 332 (700)
T ss_pred HHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch-------hhhhHHHHhc
Confidence 443 1 22321 21 13 34445556678888888887775544332 3566666554
No 37
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=47.90 E-value=57 Score=28.86 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=31.9
Q ss_pred CcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEecCCC-CeEEEEee
Q 012451 63 KLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAK-GQIAIGFT 114 (463)
Q Consensus 63 ~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~-~~i~IG~~ 114 (463)
.++|.+..+=.-+..+..+..+.--|...|.|+|.|+....|.. ...-+|..
T Consensus 90 ~i~I~f~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G~~p~~~ylG~~ 142 (146)
T PF10989_consen 90 TITITFDEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPPGDNPIGQYLGTW 142 (146)
T ss_pred EEEEEeCCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEEECCCCCcccceeeEE
Confidence 34555554322233466666555456667999999999988765 34455543
No 38
>PTZ00196 60S ribosomal protein L36; Provisional
Probab=46.60 E-value=28 Score=28.71 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=27.7
Q ss_pred ehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 012451 329 FLLHCQKFIELVRVGALEEAVKYGRMELAKYF 360 (463)
Q Consensus 329 F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~ 360 (463)
|-=...+.+|||+.+....|+.|+++.|..+.
T Consensus 48 faPYErr~mELLkv~kdKrAlKfaKkRlGth~ 79 (98)
T PTZ00196 48 FSPYERRMIELLKVGKDKRALKYAKKRLGTHK 79 (98)
T ss_pred ccHHHHHHHHHHHhcchHHHHHHHHHHhhhHH
Confidence 55667899999999999999999999887764
No 39
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=46.42 E-value=50 Score=23.98 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=36.5
Q ss_pred HHHHHHcCCHHHHHHHHHhhCCcchhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 012451 296 LRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKY 359 (463)
Q Consensus 296 Ir~~Il~G~id~Al~~l~~~~p~ll~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~ 359 (463)
-+.++..|++++|++.++. +++.++......+. .-.=+.+.|+..+|+.+.++.+.-.
T Consensus 4 a~~~~~~g~~~~A~~~~~~----~l~~~P~~~~a~~~--lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQ----ALKQDPDNPEAWYL--LGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHH----HHCCSTTHHHHHHH--HHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHH----HHHHCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4668899999999999886 45554422222221 1112236789999999998766543
No 40
>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. The L36E ribosomal family consists of mammalian, Caenorhabditis elegans and Drosophila L36, Candida albicans L39, and yeast YL39 ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1B_Q 4A1D_Q 4A19_Q 4A18_Q 3IZS_k 3IZR_k.
Probab=44.99 E-value=29 Score=28.69 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=33.4
Q ss_pred ehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHHHHHHhhhee
Q 012451 329 FLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALL 376 (463)
Q Consensus 329 F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~~l~~~~~LL 376 (463)
|-=...+-+|||+.+....|+.|+++.|..+. .-....+++..+|
T Consensus 48 faPYEkr~mELlkv~kdKrAlKf~KKRlGth~---RAKrKrEel~~vl 92 (98)
T PF01158_consen 48 FAPYEKRAMELLKVSKDKRALKFAKKRLGTHI---RAKRKREELSNVL 92 (98)
T ss_dssp HCHHHHHHHHHHHHCCHHHHHHHHHHHHCHHH---HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhcchhHHHHHHHHHHhhhhH---HHHHHHHHHHHHH
Confidence 44567889999999999999999999987774 3334455554444
No 41
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.76 E-value=22 Score=35.41 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhh
Q 012451 293 RKTLRQLIRNGEIDAAFDKLRNW 315 (463)
Q Consensus 293 R~~Ir~~Il~G~id~Al~~l~~~ 315 (463)
.+.|+++|.+|||++||.++++-
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEA 283 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEA 283 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 42
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.46 E-value=1.7e+02 Score=34.18 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=25.5
Q ss_pred ccCCCCCCCCeEEEEEeccCcEEEEEECCeee
Q 012451 149 AFGPTFTTNDTVGGGINYASQEFFFTKNGSLV 180 (463)
Q Consensus 149 ~yg~~~~~GDvIGcgid~~~~~ifFtkNG~~l 180 (463)
...++|-..=++|+-+-|-.+-|+|+.+|+.+
T Consensus 351 ~~~PkW~~~P~~Gasf~fggkLvtf~~~~~~V 382 (1049)
T KOG0307|consen 351 KKPPKWIRRPLDGASFAFGGKLVTFEPESKGV 382 (1049)
T ss_pred cCCcceeecccccceeecCceEEEEecccccc
Confidence 34567878888899998888899999999443
No 43
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=44.22 E-value=31 Score=29.95 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=40.9
Q ss_pred ceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHHHHHHhhheeeecC
Q 012451 326 STCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALLAYEK 380 (463)
Q Consensus 326 ~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~~l~~~~~LLay~~ 380 (463)
.+.|=+.+.-|++||.+|...+|.+|.++.-..+. +.+.+.|+.+.++.-=.+
T Consensus 28 ~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~--~~~~~~i~~L~~i~~p~~ 80 (133)
T cd08044 28 QLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFE--DSHSEDIKKLSSITTPEH 80 (133)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhH--HHHHHHHHHHHccCCHHH
Confidence 47788889999999999999999999987655553 567788888866544433
No 44
>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]
Probab=42.25 E-value=40 Score=27.02 Aligned_cols=46 Identities=17% Similarity=0.214 Sum_probs=36.2
Q ss_pred ehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHHHHHHhhheee
Q 012451 329 FLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALLA 377 (463)
Q Consensus 329 F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~~l~~~~~LLa 377 (463)
|.=...+.||||++.+-..|-..+++.|..+ ..-...++++...|+
T Consensus 50 lsPyErr~i~Lirns~~krArKlakKRLGs~---kRAkaKvEel~~~i~ 95 (97)
T COG5051 50 LSPYERRVIELIRNSQDKRARKLAKKRLGSL---KRAKAKVEELTSVIQ 95 (97)
T ss_pred CCHHHHHHHHHHHhcccHHHHHHHHHHhhhH---HHHHHHHHHHHHHHh
Confidence 3445788999999999999999999999888 355567777766554
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.77 E-value=23 Score=40.18 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=23.2
Q ss_pred cchhHHHHHHHHhcChHHHHHHHHHhcC
Q 012451 240 NVSYGLVRSYLQHYGYEDTLNSFDLAGK 267 (463)
Q Consensus 240 ~~l~~LI~~yL~~~Gy~eta~af~~es~ 267 (463)
.+.-+-|..||...||-|.|--|.++..
T Consensus 620 ~LvGqaiIaYLqKkgypeiAL~FVkD~~ 647 (1202)
T KOG0292|consen 620 NLVGQAIIAYLQKKGYPEIALHFVKDER 647 (1202)
T ss_pred CcccHHHHHHHHhcCCcceeeeeecCcc
Confidence 3445779999999999999999987655
No 46
>PRK04966 hypothetical protein; Provisional
Probab=40.68 E-value=36 Score=26.50 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=17.1
Q ss_pred CCCCcchhHHHHHHHHhcC
Q 012451 236 SLPPNVSYGLVRSYLQHYG 254 (463)
Q Consensus 236 ~l~~~~l~~LI~~yL~~~G 254 (463)
.++++.++.||.+|+.++|
T Consensus 7 ~L~~eTL~nLIeefv~ReG 25 (72)
T PRK04966 7 DLAPETLENLIESFVLREG 25 (72)
T ss_pred hCCHHHHHHHHHHHHhccC
Confidence 4678889999999999998
No 47
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=39.61 E-value=4.1e+02 Score=26.77 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhhCCcchhcCC-CceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHH
Q 012451 289 ALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDK-SSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEE 367 (463)
Q Consensus 289 ~~~~R~~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~-s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~ 367 (463)
.+..-+.|-+-|.+.+.-.-++|+ +...-+-+.+. +.+...+....++-++-. ++.+|+.+.++.++.+. +.+..
T Consensus 138 ~f~~lK~v~~gI~~k~~~l~iE~~-Qi~gyl~kgdtesel~l~~~~~esl~l~hk-~~~~a~r~c~t~~a~f~--~kh~~ 213 (396)
T COG5109 138 GFVKLKKVISGISEKSTFLLIEFL-QIEGYLSKGDTESELELYLVSHESLLLIHK-RYDEALRLCFTKLASFV--PKHIQ 213 (396)
T ss_pred HHHHHHHHHHhhccchhHhHHHHH-HhcCccccCCchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHhcc
Confidence 455566777788888888888888 33333333222 233333334444444443 79999999999999886 55555
Q ss_pred HHHHhhheeeecCC------CCC---chhhcCC--------------HhHHHHHHHHHHHHHHhcCCCCCCCCCCcchHH
Q 012451 368 LVQDCVALLAYEKP------QES---SVGYLLE--------------DSQREIVADTVNAMILSTNPNVKDLHGCLHSCL 424 (463)
Q Consensus 368 ~l~~~~~LLay~~~------~~s---p~~~ll~--------------~~~R~~la~~vn~aIL~~~~~~~~p~~~~~s~L 424 (463)
.++.++-.|.+-.. ++. ...+++. ...|.++.+.+-+......|-+ -.|.|
T Consensus 214 dv~~~~~~l~nap~dcfrhrekelmqnI~~~l~ksligqPiEdIDkvnk~~k~l~~lF~~eycaa~gm~------~~spL 287 (396)
T COG5109 214 DVKPLLRFLVNAPTDCFRHREKELMQNIQEALKKSLIGQPIEDIDKVNKSRKKLIELFKSEYCAANGMP------NRSPL 287 (396)
T ss_pred chHHHHHHHHcCchHHhhhcchhHHHHHHHHHHHhhcCCcHHHHHHhhhhHHHHHHHHHHHHHHhcCCC------ccChH
Confidence 66666655554211 000 0111111 1247777777777776666543 47788
Q ss_pred HHHHHHH
Q 012451 425 ERLLRQL 431 (463)
Q Consensus 425 E~l~~q~ 431 (463)
..++..-
T Consensus 288 ~~~v~tG 294 (396)
T COG5109 288 RELVETG 294 (396)
T ss_pred HHHHHhh
Confidence 7777644
No 48
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=37.98 E-value=56 Score=24.97 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=19.4
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHHH
Q 012451 331 LHCQKFIELVRVGALEEAVKYGRM 354 (463)
Q Consensus 331 L~~qkfIElir~~~~~eAl~~ar~ 354 (463)
|..++|-+|+..|+..+|-..|-.
T Consensus 8 l~~~~F~~l~~~g~y~eAA~~AA~ 31 (66)
T PF13838_consen 8 LYVQQFNELFSQGQYEEAAKVAAN 31 (66)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Confidence 668899999999999998887764
No 49
>KOG3452 consensus 60S ribosomal protein L36 [Translation, ribosomal structure and biogenesis]
Probab=37.76 E-value=46 Score=27.31 Aligned_cols=46 Identities=20% Similarity=0.173 Sum_probs=34.4
Q ss_pred ehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHHHHHHhhheee
Q 012451 329 FLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALLA 377 (463)
Q Consensus 329 F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~~l~~~~~LLa 377 (463)
|-=...+-||||+..+...|++++++.+..+. .-....+++...|+
T Consensus 50 ~aPyErr~meLlkvskdkrA~K~lKkRlGth~---RAk~KrEELsnvl~ 95 (102)
T KOG3452|consen 50 FAPYERRAMELLKVSKDKRALKLLKKRLGTHK---RAKRKREELSNVLA 95 (102)
T ss_pred CChHHHHHHHHHHHcccHHHHHHHHHHhhHHH---HHHHHHHHHHHHHH
Confidence 44456889999999999999999999988874 33455555555543
No 50
>smart00589 PRY associated with SPRY domains.
Probab=37.16 E-value=38 Score=23.63 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=20.8
Q ss_pred CccccCCCCCCCceEEcCCCcEEEEcc
Q 012451 44 PTELNTINSSGGFLVVSPDKLSVKYTS 70 (463)
Q Consensus 44 p~~w~~~~~~~~~~~ls~d~l~v~~~~ 70 (463)
+..+|+ +..+..+.||+|+.+|++..
T Consensus 3 ~vtld~-~tA~~~l~lS~d~~~v~~~~ 28 (52)
T smart00589 3 DVTLDP-DTAHPYLLLSEDRRSVRYGD 28 (52)
T ss_pred CCEECc-ccCCCCeEECCCCCEEEECC
Confidence 457788 43677899999999999875
No 51
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=36.63 E-value=40 Score=31.45 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=26.0
Q ss_pred hhHHHHHHHHhcChHHHHHHHHHhcCCCC
Q 012451 242 SYGLVRSYLQHYGYEDTLNSFDLAGKTTV 270 (463)
Q Consensus 242 l~~LI~~yL~~~Gy~eta~af~~es~~~~ 270 (463)
.-||++.||...||.++.++|.+.+++.+
T Consensus 168 aiRlcLKHlRq~~y~~aFesLqk~t~v~L 196 (199)
T PF06588_consen 168 AIRLCLKHLRQRGYLEAFESLQKQTGVQL 196 (199)
T ss_pred HHHHHHHHhhhcCchhHHHHHHHHcCCCC
Confidence 34899999999999999999999999754
No 52
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=35.31 E-value=29 Score=26.84 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=13.5
Q ss_pred CCCCcchhHHHHHHHHhcC
Q 012451 236 SLPPNVSYGLVRSYLQHYG 254 (463)
Q Consensus 236 ~l~~~~l~~LI~~yL~~~G 254 (463)
.++++.++.||.+|+.++|
T Consensus 7 ~L~~eTL~nLIeefv~ReG 25 (70)
T PF06794_consen 7 QLPPETLNNLIEEFVLREG 25 (70)
T ss_dssp GS-HHHHHHHHHHHHH---
T ss_pred HCCHHHHHHHHHHHHHccC
Confidence 4678889999999999999
No 53
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=34.16 E-value=3.1e+02 Score=27.45 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=81.0
Q ss_pred CCCCCcCChhhhhHHHHHHHhh-----hhhhc----CCCC--cchhHHHHHHHHhcChHHHHHHHHHhcCCC---CCCcc
Q 012451 209 GQKKFAFDLKEYEAQERMKQQM-----TIEKI----SLPP--NVSYGLVRSYLQHYGYEDTLNSFDLAGKTT---VPPVF 274 (463)
Q Consensus 209 G~~pF~f~~~~~~~~~~~~~~~-----~I~~~----~l~~--~~l~~LI~~yL~~~Gy~eta~af~~es~~~---~~~~~ 274 (463)
|.++-.....+.++..++.... .++.+ ...+ -+.++++.+.|.+.||.+.+.++..+...- .|...
T Consensus 91 g~T~L~~p~ad~~~~~~~~~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~~~~a~aI~~el~~fL~RlP~L~ 170 (301)
T TIGR03362 91 GRTRLAPPPADRVADYQELLAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGYAAVAQAIRDELAAFLERLPGLL 170 (301)
T ss_pred CCccCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCcChh
Confidence 4455555555666666655321 12211 1122 257899999999999999999998775421 11110
Q ss_pred ----------cc-------ccc-CC----------CcchhhhhHHHHHHHHHHHHcCCHHHHHHHHHhhCCcchhcCCCc
Q 012451 275 ----------VA-------QEN-GF----------NEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSS 326 (463)
Q Consensus 275 ----------~~-------~~~-~~----------~e~~~~~~~~~R~~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~s~ 326 (463)
.. ++. .. ...........+.+.+.++.+|.+++|+.+|+...|..-+.. ..
T Consensus 171 ~L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R-~r 249 (301)
T TIGR03362 171 ELKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPR-ER 249 (301)
T ss_pred hcccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChH-HH
Confidence 00 000 00 000001123445678999999999999999998766544332 13
Q ss_pred eeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 012451 327 TCFLLHCQKFIELVRVGALEEAVKYGRMELAKY 359 (463)
Q Consensus 327 l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~ 359 (463)
.+..|..-++. ...|...-|+...++.....
T Consensus 250 f~~rL~~A~l~--~~~g~~~lA~~ll~~L~~~~ 280 (301)
T TIGR03362 250 FHWRLLLARLL--EQAGKAELAQQLYAALDQQI 280 (301)
T ss_pred HHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHH
Confidence 23333222332 23466666766666544433
No 54
>PRK00304 hypothetical protein; Provisional
Probab=32.31 E-value=69 Score=25.14 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=16.6
Q ss_pred CCCcchhHHHHHHHHhcC
Q 012451 237 LPPNVSYGLVRSYLQHYG 254 (463)
Q Consensus 237 l~~~~l~~LI~~yL~~~G 254 (463)
++++.++.||.+|+.++|
T Consensus 8 L~~eTL~nLIeefv~ReG 25 (75)
T PRK00304 8 LEADTLTRLIEDFVTRDG 25 (75)
T ss_pred CCHHHHHHHHHHHHhccC
Confidence 678889999999999999
No 55
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=31.35 E-value=65 Score=27.40 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCCH--HHHHHHH
Q 012451 291 NQRKTLRQLIRNGEI--DAAFDKL 312 (463)
Q Consensus 291 ~~R~~Ir~~Il~G~i--d~Al~~l 312 (463)
..|.+|.+.|.+|.| ++|++.|
T Consensus 89 ~~~~~IL~~L~~GeIs~eeA~~~L 112 (113)
T PF09862_consen 89 DERKEILDKLEKGEISVEEALEIL 112 (113)
T ss_pred hhHHHHHHHHHcCCCCHHHHHHHh
Confidence 457788888888886 4555544
No 56
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=30.98 E-value=3.6e+02 Score=29.28 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=46.9
Q ss_pred HHHHHcCCHHHHHHHHHhhCCcchhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHHHHHHhhh
Q 012451 297 RQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVA 374 (463)
Q Consensus 297 r~~Il~G~id~Al~~l~~~~p~ll~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~~l~~~~~ 374 (463)
.=....|+.++|++.|.++-..+++.- .+.- .+--=+++-|..++|...-|..+..-..+-.+...++.+.+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~----~~~E--~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKL----AVLE--KRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHH----HHHH--HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 334677999999999998877777542 2222 22222356688999999999887765433344455555543
No 57
>PF14041 Lipoprotein_21: LppP/LprE lipoprotein
Probab=28.51 E-value=1.2e+02 Score=24.37 Aligned_cols=38 Identities=21% Similarity=0.411 Sum_probs=26.7
Q ss_pred cEEEEEECCeeeccccccCCCCcccEEEEccCCeEEEEecC
Q 012451 169 QEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFG 209 (463)
Q Consensus 169 ~~ifFtkNG~~lg~af~~i~~~lyP~V~~~~~~~~v~~NFG 209 (463)
..++|..+|+++|++-.... ...+.+... +..|.|.|.
T Consensus 26 ~~vl~Fh~G~fiGt~t~~p~-~~~~v~~~~--~~~V~V~Y~ 63 (89)
T PF14041_consen 26 QQVLFFHDGEFIGTATPDPY-GYIDVIRST--DDTVTVQYR 63 (89)
T ss_pred eEEEEEECCEEcccCCcccc-CceeEEeeC--CCEEEEEEE
Confidence 67999999999999765433 444555333 468888775
No 58
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=27.02 E-value=2.5e+02 Score=24.76 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=17.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHh
Q 012451 294 KTLRQLIRNGEIDAAFDKLRN 314 (463)
Q Consensus 294 ~~Ir~~Il~G~id~Al~~l~~ 314 (463)
|++.++|.+|++.+|+.+.=+
T Consensus 2 Q~L~N~l~~~~y~~Al~LAl~ 22 (141)
T PF08625_consen 2 QELSNLLRQKDYKEALRLALK 22 (141)
T ss_pred chHHHHHHhhhHHHHHHHHHh
Confidence 367889999999999987644
No 59
>PF04121 Nup84_Nup100: Nuclear pore protein 84 / 107 ; InterPro: IPR007252 Nup84p forms a complex with five proteins, including Nup120p, Nup85p, Sec13p, and a Sec13p homolog. This Nup84p complex in conjunction with Sec13-type proteins is required for correct nuclear pore biogenesis [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 3CQC_A 3CQG_A 3I4R_A 3IKO_I 3JRO_C.
Probab=26.92 E-value=1.2e+02 Score=34.10 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=22.5
Q ss_pred chhhhhHHHHHHHHHHHHcCCHHHHHHHHHh
Q 012451 284 QDNVYALNQRKTLRQLIRNGEIDAAFDKLRN 314 (463)
Q Consensus 284 ~~~~~~~~~R~~Ir~~Il~G~id~Al~~l~~ 314 (463)
+|..+.-..-+.|-++|+.|++++|.+||..
T Consensus 128 ~D~~~e~~~~~~i~~llR~G~~~eA~~lc~~ 158 (697)
T PF04121_consen 128 KDEEDERALLKYIFELLRAGRIEEAQELCRE 158 (697)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333344455689999999999999999975
No 60
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=26.21 E-value=3.5e+02 Score=28.27 Aligned_cols=86 Identities=15% Similarity=0.010 Sum_probs=53.1
Q ss_pred HHHHHHhcChHHHHHHHHHhcCCCCCCcccccccCCCcchhhhhHHHHHHHHHHHHcCCHHHHHHHHHhhCCcchhcCCC
Q 012451 246 VRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKS 325 (463)
Q Consensus 246 I~~yL~~~Gy~eta~af~~es~~~~~~~~~~~~~~~~e~~~~~~~~~R~~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~s 325 (463)
+..|+...+-.+.|..+-++.....|+.. ..-.+-+++.++-.+|++++++. | ..++.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~------------------~~LA~v~l~~~~E~~AI~ll~~a---L-~~~p~ 232 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVA------------------VLLARVYLLMNEEVEAIRLLNEA---L-KENPQ 232 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHH------------------HHHHHHHHhcCcHHHHHHHHHHH---H-HhCCC
Confidence 44666666666666666656554443321 11355566778888888888874 2 33332
Q ss_pred ceeehhhhHHHHHHHhcCCHHHHHHHHHHH
Q 012451 326 STCFLLHCQKFIELVRVGALEEAVKYGRME 355 (463)
Q Consensus 326 ~l~F~L~~qkfIElir~~~~~eAl~~ar~~ 355 (463)
+ ..|.+.|--=|+.+++.+.|++.|++-
T Consensus 233 d--~~LL~~Qa~fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 233 D--SELLNLQAEFLLSKKKYELALEIAKKA 260 (395)
T ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2 555555555567778888888888863
No 61
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=26.04 E-value=47 Score=25.70 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=33.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhhCCcchhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHH
Q 012451 295 TLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRM 354 (463)
Q Consensus 295 ~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~ 354 (463)
.-+-....|++++|++++.. ..+-..+. ...+.+ -+.+++ .++.++|++...+
T Consensus 31 la~~~~~~~~y~~A~~~~~~--~~~~~~~~-~~~~l~-a~~~~~---l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK--LKLDPSNP-DIHYLL-ARCLLK---LGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC--HTHHHCHH-HHHHHH-HHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH--hCCCCCCH-HHHHHH-HHHHHH---hCCHHHHHHHHhc
Confidence 45678899999999999987 23333321 333333 444444 4788999887654
No 62
>PF12854 PPR_1: PPR repeat
Probab=25.92 E-value=88 Score=20.04 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhh
Q 012451 294 KTLRQLIRNGEIDAAFDKLRNW 315 (463)
Q Consensus 294 ~~Ir~~Il~G~id~Al~~l~~~ 315 (463)
.-|.-.-..|++++|++++++.
T Consensus 12 ~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 12 TLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHhC
Confidence 3688999999999999998753
No 63
>PF13934 ELYS: Nuclear pore complex assembly
Probab=25.28 E-value=3.7e+02 Score=25.59 Aligned_cols=171 Identities=17% Similarity=0.040 Sum_probs=0.0
Q ss_pred cCChhh---hhHHHHHHHhhhhhhcCCCCcchhHHHHHHHHhcChHH---HHHHHHHhcCCCCCCcccccccCCCcchhh
Q 012451 214 AFDLKE---YEAQERMKQQMTIEKISLPPNVSYGLVRSYLQHYGYED---TLNSFDLAGKTTVPPVFVAQENGFNEQDNV 287 (463)
Q Consensus 214 ~f~~~~---~~~~~~~~~~~~I~~~~l~~~~l~~LI~~yL~~~Gy~e---ta~af~~es~~~~~~~~~~~~~~~~e~~~~ 287 (463)
.|+|.+ . ++....|....++...-+.||.=+|...+-.. .+..|+...+++.
T Consensus 20 ~YPP~s~~~L-----~~Ll~~i~~~~~~~~~K~~l~~YlLlD~~~~~~~~~~~~Fa~~f~ip~----------------- 77 (226)
T PF13934_consen 20 LYPPKSDNDL-----RALLDLILSSNVSLLKKHSLFYYLLLDLDDTRPSELAESFARAFGIPP----------------- 77 (226)
T ss_pred CCCccCHHHH-----HHHHHHHhcCCcCHHHhHHHHHHHHHhcCccccccHHHHHHHHhCCCH-----------------
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHhhCCcchhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHH
Q 012451 288 YALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEE 367 (463)
Q Consensus 288 ~~~~~R~~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~ 367 (463)
.+....+=-=++-.+++++|++.+ ..|.+-...++.+.-.|.+ +++...|+.|.|.--.+. .-.+
T Consensus 78 -~~~~~~~g~W~LD~~~~~~A~~~L--~~ps~~~~~~~~Il~~L~~--------~~~~~lAL~y~~~~~p~l----~s~~ 142 (226)
T PF13934_consen 78 -KYIKFIQGFWLLDHGDFEEALELL--SHPSLIPWFPDKILQALLR--------RGDPKLALRYLRAVGPPL----SSPE 142 (226)
T ss_pred -HHHHHHHHHHHhChHhHHHHHHHh--CCCCCCcccHHHHHHHHHH--------CCChhHHHHHHHhcCCCC----CCHH
Q ss_pred HHHHhhheeeecCCCC-CchhhcCCHhHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHH
Q 012451 368 LVQDCVALLAYEKPQE-SSVGYLLEDSQREIVADTVNAMILSTNPNVKDLHGCLHSCLERLLR 429 (463)
Q Consensus 368 ~l~~~~~LLay~~~~~-sp~~~ll~~~~R~~la~~vn~aIL~~~~~~~~p~~~~~s~LE~l~~ 429 (463)
.+.-++.+|+.....+ --+.--.....|..+.+.+-..++..... ..+++.|+.
T Consensus 143 ~~~~~~~~La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~~--------~~~~~~Ll~ 197 (226)
T PF13934_consen 143 ALTLYFVALANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECAR--------SGRLDELLS 197 (226)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhhh--------hhHHHHHHh
No 64
>KOG4600 consensus Mitochondrial ribosomal protein MRP7 (L2) [Translation, ribosomal structure and biogenesis]
Probab=24.55 E-value=51 Score=28.77 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=24.2
Q ss_pred ccCCCCCCCCeEEEEEe-----ccCcEEEEEECCeee
Q 012451 149 AFGPTFTTNDTVGGGIN-----YASQEFFFTKNGSLV 180 (463)
Q Consensus 149 ~yg~~~~~GDvIGcgid-----~~~~~ifFtkNG~~l 180 (463)
.=|.+|.+||-||+|=| +..|.|-|++-+...
T Consensus 67 QRgtkfHPG~nVGiGKDhtifaL~eG~Vrf~k~~~~~ 103 (144)
T KOG4600|consen 67 QRGTKFHPGDNVGIGKDHTIFALEEGRVRFEKSKITP 103 (144)
T ss_pred ecccccCCCcccccCCcceEEEeeccEEEEEEccCCC
Confidence 34778999999999976 356777788776544
No 65
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=24.24 E-value=85 Score=18.71 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=14.7
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 012451 296 LRQLIRNGEIDAAFDKLR 313 (463)
Q Consensus 296 Ir~~Il~G~id~Al~~l~ 313 (463)
-+-++..|++++|..++.
T Consensus 8 a~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 8 ARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 456788999999998875
No 66
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=24.07 E-value=1.9e+02 Score=26.35 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=17.6
Q ss_pred cchhHHHHHHHHhcChHHHHHHHH
Q 012451 240 NVSYGLVRSYLQHYGYEDTLNSFD 263 (463)
Q Consensus 240 ~~l~~LI~~yL~~~Gy~eta~af~ 263 (463)
..+..|+.+=|++.|-...+..|-
T Consensus 29 ~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 29 HELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 458888888888888666666664
No 67
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=23.85 E-value=7.4e+02 Score=25.16 Aligned_cols=109 Identities=12% Similarity=0.060 Sum_probs=59.6
Q ss_pred HHHHHHHHhcChHHHHHHHHHhcCCCCCCcccccccCCCcchhhhhHHHHHHHHHHHHcCCHHHHHHHHHhhCCcchhcC
Q 012451 244 GLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDD 323 (463)
Q Consensus 244 ~LI~~yL~~~Gy~eta~af~~es~~~~~~~~~~~~~~~~e~~~~~~~~~R~~Ir~~Il~G~id~Al~~l~~~~p~ll~~~ 323 (463)
+.-...+...-|.++...|.+.... .|... ... ..+-.-++..|++++|+..+... ++.+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~-~P~~~-------------~a~--~~~a~~~~~~g~~~eAl~~~~~A----l~l~ 66 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL-DPNNA-------------ELY--ADRAQANIKLGNFTEAVADANKA----IELD 66 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCH-------------HHH--HHHHHHHHHcCCHHHHHHHHHHH----HHhC
Confidence 3445566666677777777666552 22110 111 22344567789999999888753 3323
Q ss_pred CCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHHHHHHhhh
Q 012451 324 KSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVA 374 (463)
Q Consensus 324 ~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~~l~~~~~ 374 (463)
+.. ...+.+.-+=+...|+..+|+.+.++-+.-...++.....+..+-.
T Consensus 67 P~~--~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 67 PSL--AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred cCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 211 1222233334455688999999998766544334444444444433
No 68
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=23.58 E-value=1.7e+02 Score=24.62 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhCCcchhcCCCceeehhhhHHHH
Q 012451 293 RKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFI 337 (463)
Q Consensus 293 R~~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~s~l~F~L~~qkfI 337 (463)
-..+.++|.+++|++|.+.+.+..-.--+.. ..+.|.+..+.+-
T Consensus 32 l~~i~~~i~~~dW~~A~~~~~~l~~~W~k~~-~~~~~~~~h~eid 75 (121)
T PF14276_consen 32 LEQIEEAIENEDWEKAYKETEELEKEWDKNK-KRWSILIEHQEID 75 (121)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhc-hheeeeecHHHHH
Confidence 4579999999999999998887653333333 3678888877764
No 69
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=23.23 E-value=3e+02 Score=20.03 Aligned_cols=56 Identities=20% Similarity=0.149 Sum_probs=38.5
Q ss_pred HHHHcCCHHHHHHHHHhhCCcchhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 012451 298 QLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKY 359 (463)
Q Consensus 298 ~~Il~G~id~Al~~l~~~~p~ll~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~ 359 (463)
-++..++++.|++.++.. +.-+|. ...++...=.=+.+.|+..+|++..++.+.-.
T Consensus 4 ~~~~~~~~~~A~~~~~~~----l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERA----LELDPD--DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHH----HHhCcc--cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 357889999999999864 444442 33344444444566789999999999877544
No 70
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=22.85 E-value=5.8e+02 Score=24.95 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCCcchhcCCCceeehhhhHHHHHHH----hcCCHHHHHHHHHHHHhhhcCCc
Q 012451 292 QRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELV----RVGALEEAVKYGRMELAKYFGLA 363 (463)
Q Consensus 292 ~R~~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~s~l~F~L~~qkfIEli----r~~~~~eAl~~ar~~l~~~~~~~ 363 (463)
.-++....+..|+|++|++.++.. ...++ .=. .-.|-.|+++ +.++..+|+.++-..+.-+.+++
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l----~~~~p-~s~--~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEAL----DSRHP-FSP--YSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH----HHcCC-CCc--ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 356899999999999999988764 33333 111 2266667776 56899999999998877776543
No 71
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=22.05 E-value=4.5e+02 Score=21.63 Aligned_cols=97 Identities=19% Similarity=0.086 Sum_probs=51.6
Q ss_pred hhHHHHHHHHhcChHHHHHHHHHhcCCCCCCcccccccCCCcchhhhhHHHHHHHHHHHHcCCHHHHHHHHHhhCCcchh
Q 012451 242 SYGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQ 321 (463)
Q Consensus 242 l~~LI~~yL~~~Gy~eta~af~~es~~~~~~~~~~~~~~~~e~~~~~~~~~R~~Ir~~Il~G~id~Al~~l~~~~p~ll~ 321 (463)
+..+..-|+...-|.++...|.+-... .|... .+ ....-.-....|++++|+++++.. ++
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~--------------~~-~~~la~~~~~~~~~~~A~~~~~~~----~~ 79 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY-DPYNS--------------RY-WLGLAACCQMLKEYEEAIDAYALA----AA 79 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh-CCCcH--------------HH-HHHHHHHHHHHHHHHHHHHHHHHH----Hh
Confidence 445556666666677776666554332 11110 11 112234445679999999888753 22
Q ss_pred cCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhc
Q 012451 322 DDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYF 360 (463)
Q Consensus 322 ~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~ 360 (463)
.++....+.... -+-+...|+.++|+.+.++.+.-..
T Consensus 80 ~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 80 LDPDDPRPYFHA--AECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred cCCCChHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 222122222222 2223346889999999987665443
No 72
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=21.38 E-value=1.7e+02 Score=32.52 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCCcchhcCC-CceeehhhhHHHHHH----HhcCCHHHHHHHHHHH
Q 012451 294 KTLRQLIRNGEIDAAFDKLRNWHPWIVQDDK-SSTCFLLHCQKFIEL----VRVGALEEAVKYGRME 355 (463)
Q Consensus 294 ~~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~-s~l~F~L~~qkfIEl----ir~~~~~eAl~~ar~~ 355 (463)
+-++-.|..|+|++|.++..+ .|+++++-- ....|+-..-+|+|. +|.|...||+....+.
T Consensus 778 siVqlHve~~~W~eAFalAe~-hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEK-HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred HHhhheeecccchHhHhhhhh-CccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 345667999999999998765 588887531 124466667788876 5678888988887753
No 73
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=20.89 E-value=1.2e+02 Score=21.23 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=15.7
Q ss_pred CHhHHHHHHHHHHHHHHhc
Q 012451 391 EDSQREIVADTVNAMILST 409 (463)
Q Consensus 391 ~~~~R~~la~~vn~aIL~~ 409 (463)
.+.+|..+|+.|-.|+..+
T Consensus 25 ~~~qR~~iAe~Fa~AL~~S 43 (44)
T PF07208_consen 25 PPAQRQAIAEKFAQALKSS 43 (44)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 5789999999999998654
No 74
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=20.61 E-value=1.3e+03 Score=26.55 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHh
Q 012451 294 KTLRQLIRNGEIDAAFDKLRN 314 (463)
Q Consensus 294 ~~Ir~~Il~G~id~Al~~l~~ 314 (463)
..+.++|..|+...++.+++.
T Consensus 252 ~~lidAL~~~D~a~al~~l~~ 272 (824)
T PRK07764 252 DEAVDALAAGDGAALFGTVDR 272 (824)
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 356666777777777777654
No 75
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=20.16 E-value=1.4e+02 Score=22.87 Aligned_cols=30 Identities=13% Similarity=0.053 Sum_probs=22.3
Q ss_pred CCCCCCeEEEEEeccCcEEEEEECCeeeccc
Q 012451 153 TFTTNDTVGGGINYASQEFFFTKNGSLVGAV 183 (463)
Q Consensus 153 ~~~~GDvIGcgid~~~~~ifFtkNG~~lg~a 183 (463)
.+++||||-+..+ .+..+....||+.++.+
T Consensus 28 ~L~~Gdvi~l~~~-~~~~v~l~v~g~~~~~g 57 (77)
T PF01052_consen 28 NLKVGDVIPLDKP-ADEPVELRVNGQPIFRG 57 (77)
T ss_dssp C--TT-EEEECCE-SSTEEEEEETTEEEEEE
T ss_pred cCCCCCEEEeCCC-CCCCEEEEECCEEEEEE
Confidence 5789999999988 45778888899998764
Done!