Query 012451
Match_columns 463
No_of_seqs 299 out of 1620
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 09:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yyo_A SPRY domain-containing 100.0 3E-38 1E-42 288.2 18.8 158 53-218 7-170 (171)
2 3toj_A SET1/ASH2 histone methy 100.0 1.2E-37 4.3E-42 294.0 18.7 166 42-219 10-184 (213)
3 3emw_A SPRY domain-containing 99.9 2.5E-25 8.7E-30 210.2 17.5 162 41-208 40-214 (217)
4 2jk9_A SPRY domain-containing 99.9 7.3E-24 2.5E-28 199.8 17.6 161 42-208 30-205 (212)
5 2afj_A Gene rich cluster, C9 g 99.9 2E-23 6.9E-28 198.6 8.1 163 41-209 37-212 (226)
6 2vok_A 52 kDa RO protein; poly 99.2 4.4E-10 1.5E-14 103.2 17.4 149 42-199 8-171 (188)
7 2fbe_A Predicted: similar to R 99.2 5.5E-10 1.9E-14 103.7 18.0 147 44-198 11-171 (201)
8 3uv9_A TRIM5alpha, tripartite 99.2 2.2E-10 7.5E-15 105.2 13.8 142 45-201 14-176 (186)
9 2wl1_A Pyrin, marenostrin; amy 99.2 4.9E-10 1.7E-14 103.3 15.8 148 44-199 14-175 (191)
10 3kb5_A Tripartite motif-contai 99.0 1.4E-08 4.9E-13 93.6 17.7 149 43-198 12-179 (193)
11 2e63_A KIAA1787 protein; struc 98.8 9E-08 3.1E-12 86.1 15.0 155 43-205 5-168 (170)
12 4b3n_A Maltose-binding peripla 98.7 2.7E-07 9.4E-12 99.4 16.7 148 44-200 411-595 (602)
13 2yue_A Protein neuralized; str 98.2 4.5E-05 1.5E-09 68.3 14.9 141 42-206 6-159 (168)
14 1uuj_A Platelet-activating fac 86.1 0.61 2.1E-05 36.6 3.6 29 241-269 12-40 (88)
15 2xtc_A F-box-like/WD repeat-co 81.6 0.86 2.9E-05 35.9 2.7 36 237-272 3-38 (90)
16 2d68_A FOP, FGFR1OP; alpha hel 73.7 3.8 0.00013 31.6 4.3 30 240-269 19-48 (82)
17 1vyh_C Platelet-activating fac 61.5 1.7 5.8E-05 43.1 0.0 30 240-269 9-38 (410)
18 2nxp_A Transcription initiatio 60.5 8.8 0.0003 33.2 4.5 63 326-390 51-113 (156)
19 2j4b_A TAF5, transcription ini 46.5 19 0.00065 30.4 4.2 48 326-376 32-79 (138)
20 2j49_A Transcription initiatio 45.9 15 0.00053 31.4 3.5 48 326-376 34-81 (148)
21 2kc7_A BFR218_protein; tetratr 37.4 1.1E+02 0.0039 22.1 7.2 60 295-359 6-65 (99)
22 4a18_Q RPL36, 60S ribosomal pr 36.0 32 0.0011 27.5 3.6 32 329-360 51-85 (104)
23 2xz2_A CSTF-50, isoform B; RNA 30.7 41 0.0014 24.6 3.1 28 241-268 18-45 (66)
24 1y0n_A Hypothetical UPF0270 pr 29.6 47 0.0016 25.2 3.4 20 236-255 9-28 (78)
25 1a17_A Serine/threonine protei 27.6 2.2E+02 0.0076 22.3 8.9 55 297-355 89-143 (166)
26 3izc_k 60S ribosomal protein R 26.7 20 0.00069 28.5 1.0 42 332-373 53-94 (100)
27 2dna_A Unnamed protein product 25.8 69 0.0024 23.5 3.7 26 293-318 34-61 (67)
28 3upv_A Heat shock protein STI1 25.6 2.2E+02 0.0075 21.5 9.7 95 243-359 8-102 (126)
29 3ma5_A Tetratricopeptide repea 24.9 2.1E+02 0.0072 21.1 7.7 54 296-357 14-69 (100)
30 4gco_A Protein STI-1; structur 24.8 2.5E+02 0.0084 21.9 9.1 105 245-371 19-123 (126)
31 3zx7_A Lysenin; toxin, pore fo 23.6 1.7E+02 0.0059 26.1 6.5 42 129-170 220-268 (309)
32 3uq3_A Heat shock protein STI1 22.3 3.5E+02 0.012 22.8 9.0 59 295-359 179-237 (258)
33 1whc_A RSGI RUH-027, UBA/UBX 3 22.0 1.1E+02 0.0038 21.9 4.2 18 302-319 35-52 (64)
34 3k9i_A BH0479 protein; putativ 21.6 2.3E+02 0.0078 21.3 6.6 63 295-363 33-95 (117)
35 2vgx_A Chaperone SYCD; alterna 20.1 3.4E+02 0.012 21.7 10.4 102 242-365 24-125 (148)
No 1
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-38 Score=288.22 Aligned_cols=158 Identities=34% Similarity=0.665 Sum_probs=138.8
Q ss_pred CCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEeeCCCCCCCCCCCCCCCeeE
Q 012451 53 SGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMRRQPGWEANSCG 132 (463)
Q Consensus 53 ~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~~~~~~~~~~~G~~~~S~g 132 (463)
++..|.+++|.+ +|++.. .++++|||++|++ +|+|||||+|...+..+.++|||++..+++++++||+.+|||
T Consensus 7 r~~~l~~~~d~l--~~~~~~---~~~~~vra~~p~~--~g~~YfEv~i~~~~~~~~~~IG~a~~~~~~~~~~G~d~~S~g 79 (171)
T 2yyo_A 7 GFKHILVDGDTL--SYHGNS---GEVGCYVASRPLT--KDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDHQPGWLPDSVA 79 (171)
T ss_dssp EEESEEEETTEE--EECCCS---SCCEEEECSSCCC--SSSCEEEEEEEEETTTCCCEEEEECTTCCTTSCTTSSTTCEE
T ss_pred CcceEEEcCCEE--EEeCCC---CceeEEEECCCCC--CCCEEEEEEEEECCCCcEEEEEecCCCCCCccCCCccCCEEE
Confidence 455788987754 566643 3799999999996 699999999999888889999999999999999999999999
Q ss_pred EEcCCCcEEecCCCCcccCCCCCCCCeEEEEEecc-----CcEEEEEECCeeeccccccCC-CCcccEEEEccCCeEEEE
Q 012451 133 YHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYA-----SQEFFFTKNGSLVGAVYKDIK-GPLFPTIAVHSQNEEVLV 206 (463)
Q Consensus 133 y~~~~G~~~~~~~~~~~yg~~~~~GDvIGcgid~~-----~~~ifFtkNG~~lg~af~~i~-~~lyP~V~~~~~~~~v~~ 206 (463)
|++++|++||+...+..||++|++||||||+||++ .++|||||||+.||+||.++. +.|||+|++..++++|++
T Consensus 80 y~~~dG~~~~~~~~~~~yg~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~~~~~~lyPaV~l~~~g~~v~v 159 (171)
T 2yyo_A 80 YHADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMPMSPDGLFPAVGMHSLGEEVRL 159 (171)
T ss_dssp EETTTCCEESSSSCCBCCSCCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEESSCSSSCEEEEEECSTTEEEEE
T ss_pred EEcCCCeEEeCCCCCCcCCCCCCCCCEEEEEEEeccCCCCcEEEEEEECCEEcCceecCCcCCCEEEEEEEecCCCEEEE
Confidence 99999999998767899999999999999999998 499999999999999999995 899999999987899999
Q ss_pred ecCCCCCcCChh
Q 012451 207 NFGQKKFAFDLK 218 (463)
Q Consensus 207 NFG~~pF~f~~~ 218 (463)
|||+ +|.++|.
T Consensus 160 NFG~-~~~~pp~ 170 (171)
T 2yyo_A 160 HLNA-ELSGPSS 170 (171)
T ss_dssp ETTC-CC-----
T ss_pred ECCC-CCcCCCC
Confidence 9998 8988764
No 2
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=294.00 Aligned_cols=166 Identities=25% Similarity=0.413 Sum_probs=151.5
Q ss_pred CCCccccCCCCCCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEeeCCCCCCC
Q 012451 42 EVPTELNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMR 121 (463)
Q Consensus 42 ~~p~~w~~~~~~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~~~~~~~~ 121 (463)
+..++||+.+ ++..|.||+|+++|++. .++++||++++++ +|+|||||+|...+..+.++|||+++.++++
T Consensus 10 ~~~v~ld~~d-~~~~l~ls~d~l~v~~~------~~~~~vra~~~v~--~G~~YfEV~v~~~~~~~~~~iG~a~~~~~~~ 80 (213)
T 3toj_A 10 YERVLLALHD-RAPQLKISDDRLTVVGE------KGYSMVRASHGVR--KGAWYFEITVDEMPPDTAARLGWSQPLGNLQ 80 (213)
T ss_dssp ECCCCEEEEE-ECTTSEECTTSSEEECC------SSCEEEEESCCBS--SEEEEEEEEEEECCTTCEEEEEEECTTSCTT
T ss_pred CCeEEechhh-CCCCEEEcCCCcEEEeC------CceeEEEeCCCcc--CCeEEEEEEEeecCCCceEEEEeccCCcccc
Confidence 4458999955 68899999999999862 3689999999996 7999999999997767899999999999999
Q ss_pred CCCCCCCCeeEEEcCCCcEEecCCCCcccCCCCCCCCeEEEEEeccC--------cEEEEEECCeeeccccccC-CCCcc
Q 012451 122 RQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYAS--------QEFFFTKNGSLVGAVYKDI-KGPLF 192 (463)
Q Consensus 122 ~~~G~~~~S~gy~~~~G~~~~~~~~~~~yg~~~~~GDvIGcgid~~~--------~~ifFtkNG~~lg~af~~i-~~~ly 192 (463)
+.+||+.+||||++++|++||+ +.+..||++|+.||||||+||++. ++|+||+||+.+|+||+++ .+.+|
T Consensus 81 ~~~G~d~~S~gy~~~~G~~~h~-~~~~~yg~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG~~lg~aF~~~~~~~ly 159 (213)
T 3toj_A 81 APLGYDKFSYSWRSKKGTKFHQ-SIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKDIFEGVYF 159 (213)
T ss_dssp SCTTSSTTEEEEETTTTCEEET-TEEECCSCCCCTTCEEEEEEEECCC-----CCCEEEEEETTEEEEEEEESCCSSCBE
T ss_pred cCCCCCCCcEEEECCCCeEEeC-CcCcccCCCCCCCCEEEEEEEcCCCccccCCccEEEEEeCCeeeeeeEEcCCCCcEE
Confidence 9999999999999999999997 467899999999999999999998 7999999999999999999 68999
Q ss_pred cEEEEccCCeEEEEecCCCCCcCChhh
Q 012451 193 PTIAVHSQNEEVLVNFGQKKFAFDLKE 219 (463)
Q Consensus 193 P~V~~~~~~~~v~~NFG~~pF~f~~~~ 219 (463)
|+|++.. +++|++|||+ ||+|+|++
T Consensus 160 Pavsl~~-~~~v~~NFG~-~F~~~p~~ 184 (213)
T 3toj_A 160 PAISLYK-SCTVSINFGP-CFKYPPKD 184 (213)
T ss_dssp EEEEEES-SCEEEEECSS-SCSSCCSS
T ss_pred EEEEcCC-CCEEEEECCC-CCccCCCC
Confidence 9999986 7999999999 99999874
No 3
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=99.93 E-value=2.5e-25 Score=210.18 Aligned_cols=162 Identities=12% Similarity=0.171 Sum_probs=136.4
Q ss_pred CCCCccccCCCCCCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEeeCCCCC-
Q 012451 41 EEVPTELNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFK- 119 (463)
Q Consensus 41 ~~~p~~w~~~~~~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~~~~~~- 119 (463)
.+.+.+||+. ..++.+.||+|+++|++.... ..+.+|+++.++. +|+|||||+|........+.|||+++..+
T Consensus 40 ~~~~~tlDp~-ta~~~L~lSed~~~v~~~~~~---~~~~~Vl~~~~~~--sGrhYWEV~v~~~~~g~~~~vGv~~~~~~r 113 (217)
T 3emw_A 40 AQRRHGWNPK-DCSENIEVKEGGLYFERRPVA---QSTDGARGKRGYS--RGLHAWEISWPLEQRGTHAVVGVATALAPL 113 (217)
T ss_dssp HHHHTSEEEE-EECTTEEEEGGGTEEEECCBS---SCEEEEEESCCBS--SSEEEEEEECCGGGCTTCCEEEEECTTSCC
T ss_pred cccceEeCcc-cCCCCEEECCCCeEEEECccC---CCCCEEEeCCCcc--CccEEEEEEEcccCCCCceeEEEEcCcccc
Confidence 3567899994 478899999999999986432 2367999999985 89999999998653335799999999876
Q ss_pred ----CCCCCCCCCCeeEEEcCCCcEEecCCC--CcccC-----CCCCCCCeEEEEEeccCcEEEEEECCeeeccccccC-
Q 012451 120 ----MRRQPGWEANSCGYHGDDGLLYRGQGK--GEAFG-----PTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDI- 187 (463)
Q Consensus 120 ----~~~~~G~~~~S~gy~~~~G~~~~~~~~--~~~yg-----~~~~~GDvIGcgid~~~~~ifFtkNG~~lg~af~~i- 187 (463)
....+|++..||+|+.++|.+||+... ...|+ +.+..+|+|||.||++.|+|+|++||+.+|.||+++
T Consensus 114 ~~~g~~~~lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~~d~IGV~LD~~~G~LsFy~ng~~lg~aF~~~~ 193 (217)
T 3emw_A 114 QTDHYAALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGPAFRGLK 193 (217)
T ss_dssp EESSSCCCTTSSTTEEEEETTTCBEESSCCSSCCCBSSSSSTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCT
T ss_pred ccCCccccccCCCCEEEEEeCCCcEEeCCcccCCccccccccccCCCCCCEEEEEEEcCCCEEEEEECCeEeEEEEECCC
Confidence 356799999999999888999987532 34565 568999999999999999999999999999999999
Q ss_pred CCCcccEEEEccCCeEEEEec
Q 012451 188 KGPLFPTIAVHSQNEEVLVNF 208 (463)
Q Consensus 188 ~~~lyP~V~~~~~~~~v~~NF 208 (463)
..++||+|++...+++|++++
T Consensus 194 ~~~LyP~~sl~~g~~~v~l~~ 214 (217)
T 3emw_A 194 GRTLYPAVSAVWGQCQVRIRY 214 (217)
T ss_dssp TCCBEEEEEECSTTCEEEEEE
T ss_pred CCEEEEEEEeccCCcEEEEEe
Confidence 459999999988889999876
No 4
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=99.91 E-value=7.3e-24 Score=199.78 Aligned_cols=161 Identities=14% Similarity=0.222 Sum_probs=132.2
Q ss_pred CCCccccCCCCCCCceEEcCCCc-EEEEccccccccceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEeeCCCCCC
Q 012451 42 EVPTELNTINSSGGFLVVSPDKL-SVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKM 120 (463)
Q Consensus 42 ~~p~~w~~~~~~~~~~~ls~d~l-~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~~~~~~~ 120 (463)
+.+.+||+.+ .+..+.||+|+. ++.+.... ..+.+|+++.++. +|+|||||+|......+.+.||||++..+.
T Consensus 30 ~~~~tldp~t-a~~~L~lsed~~~~~~~~~~~---~~~~~Vlg~~~f~--sGrhYWEV~v~~~~~~~~w~vGV~~~~~~r 103 (212)
T 2jk9_A 30 QLLHSWNNND-RSLNVFVKEDDKLIFHRHPVA---QSTDAIRGKVGYT--RGLHVWQITWAMRQRGTHAVVGVATADAPL 103 (212)
T ss_dssp HHHTSEEEEE-ECTTEEEETTEEEEEEECCBT---TEEEEEEESCCBC--SSEEEEEEECCGGGCTTCCEEEEECTTSCC
T ss_pred ccccccChhh-cCCceEEeCCCeEEEEECCCC---CccceEEcCCCcc--CCeEEEEEEEecccCCCcEEEEEEcCCccc
Confidence 5678999944 678999999974 66654321 3588999999884 899999999975433467899999998764
Q ss_pred -----CCCCCCCCCeeEEEcCCCcEEecCCCC--cc------cCCCCCCCCeEEEEEeccCcEEEEEECCeeeccccccC
Q 012451 121 -----RRQPGWEANSCGYHGDDGLLYRGQGKG--EA------FGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDI 187 (463)
Q Consensus 121 -----~~~~G~~~~S~gy~~~~G~~~~~~~~~--~~------yg~~~~~GDvIGcgid~~~~~ifFtkNG~~lg~af~~i 187 (463)
...+|++..||+|+..+|+++|+.... .. +++.|..+|+|||.||++.|+|+|++||..++.+|.++
T Consensus 104 ~~~g~~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~G~lsFy~ng~~l~~aF~~~ 183 (212)
T 2jk9_A 104 HSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGL 183 (212)
T ss_dssp EEESSCCCTTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCC
T ss_pred cccCcccccccCCCcEeeECCCCcEEECCcccCccccCcccccCCcCCCCCEEEEEEECCCCEEEEEECCEEeEEEeccC
Confidence 346799999999999889999864321 12 56788999999999999999999999999999999998
Q ss_pred CC-CcccEEEEccCCeEEEEec
Q 012451 188 KG-PLFPTIAVHSQNEEVLVNF 208 (463)
Q Consensus 188 ~~-~lyP~V~~~~~~~~v~~NF 208 (463)
.+ ++||+|++...++.|++||
T Consensus 184 ~~~~l~P~f~l~~g~~~v~l~~ 205 (212)
T 2jk9_A 184 KGKKLYPVVSAVWGHCEIRMRY 205 (212)
T ss_dssp TTCCBEEEEEECCTTCEEEEEE
T ss_pred CCCEEeeEEEEEcCCcEEEEEE
Confidence 54 9999999976678999988
No 5
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=99.88 E-value=2e-23 Score=198.60 Aligned_cols=163 Identities=13% Similarity=0.189 Sum_probs=130.8
Q ss_pred CCCCccccCCCCCCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEeeCCCCC-
Q 012451 41 EEVPTELNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFK- 119 (463)
Q Consensus 41 ~~~p~~w~~~~~~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~~~~~~- 119 (463)
.+.+.+||+.+ .+..|.||+|+++|++..... .+.+|+++.++. +|+|||||+|...+..+.+.||||++..+
T Consensus 37 ~~~~~tLDp~t-a~~~L~lSed~~~v~~~~~~~---~~~~Vlg~~~f~--sGrhYWEV~V~~~~~~~~w~vGV~~~s~~~ 110 (226)
T 2afj_A 37 AQRHHGWNPKD-CSENIDVKEGGLCFERRPVAQ---STDGVRGKRGYS--RGLHAWEISWPLEQRGTHAVVGVATALAPL 110 (226)
T ss_dssp HHHHHSSCCSS-SCCSSEEETTTTEEECSSCTT---TSSSEEECCCCC--CSEEEEEEECCCCSSSCCCEEEEEESSCCC
T ss_pred cccccEEcccc-CCCCEEEeCCCEEEEECCCCC---CcCeEEECCCcc--CCEEEEEEEEeccCCCCCEEEEecCCcccc
Confidence 35678999944 788999999999998754321 234899999885 89999999997643346799999998874
Q ss_pred ----CCCCCCCCCCeeEEEcCCCcEEecCCC--Cccc-----CCCCCCCCeEEEEEeccCcEEEEEECCeeeccccccC-
Q 012451 120 ----MRRQPGWEANSCGYHGDDGLLYRGQGK--GEAF-----GPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDI- 187 (463)
Q Consensus 120 ----~~~~~G~~~~S~gy~~~~G~~~~~~~~--~~~y-----g~~~~~GDvIGcgid~~~~~ifFtkNG~~lg~af~~i- 187 (463)
....+|++..||+|+..+|+++|+... ...| ++.+..+|+|||.||++.|+|+|++||..++.+|.++
T Consensus 111 ~r~~~~~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~rIGV~LD~e~G~lSFy~ng~~l~~aF~~~~ 190 (226)
T 2afj_A 111 QADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLK 190 (226)
T ss_dssp SSCSSSCCCCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTTTEEEEESTTCSCSTTHHHHH
T ss_pred ccccccccccCCCCcEEEEcCCCeEEECccccCcccccccccCCcCCCCCEEEEEEECCCCEEEEEECCeEeEEEEEcCC
Confidence 345679999999999877888776432 2234 4467899999999999999999999999999999987
Q ss_pred CCCcccEEEEccCCeEEEEecC
Q 012451 188 KGPLFPTIAVHSQNEEVLVNFG 209 (463)
Q Consensus 188 ~~~lyP~V~~~~~~~~v~~NFG 209 (463)
..++||++++...++.|++||-
T Consensus 191 ~~~L~P~f~l~~g~~~v~l~~~ 212 (226)
T 2afj_A 191 GRTLYPSVSAVWGQCQVRIRYM 212 (226)
T ss_dssp HHCCEEEEEECCTTSCCEEEEE
T ss_pred CCEEEEEEEcccCCCEEEEEEc
Confidence 4499999999765677887773
No 6
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=99.22 E-value=4.4e-10 Score=103.23 Aligned_cols=149 Identities=17% Similarity=0.208 Sum_probs=104.7
Q ss_pred CCCccccCCCCCCCceEEcCCCcEEEEcccccc-c------cceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEee
Q 012451 42 EVPTELNTINSSGGFLVVSPDKLSVKYTSVNLH-G------HDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFT 114 (463)
Q Consensus 42 ~~p~~w~~~~~~~~~~~ls~d~l~v~~~~~~~~-~------~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~ 114 (463)
..+.++|+ +..++.|.||+|+.+|++...... . ..+..|.+...+. +|+|||||++.. ...+.||+|
T Consensus 8 ~~~vtLDp-~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fs--SGrHYWEVev~~---~~~w~vGV~ 81 (188)
T 2vok_A 8 MVHITLDR-NTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFS--SGKMYWEVDVTQ---KEAWDLGVC 81 (188)
T ss_dssp BCCCCBCG-GGSCTTEEECTTSCEEEECSSCCCCCCCTTSCCSSSEEEBSCCBS--SSEEEEEEECTT---CSCEEEEEE
T ss_pred ccceEECC-ccCCCCeEECCCCCEEEECCccCCCCCCccceeeeccccccCccc--CCCeEEEEEecC---CceEEEEEe
Confidence 45678888 446789999999999999763210 0 1256889999874 899999999953 357999999
Q ss_pred CCCCCCC--CCCCCCCCeeEEEcCCCcEEecCCC-CcccCCCCCCCCeEEEEEeccCcEEEEEEC--C-eeecccccc--
Q 012451 115 SESFKMR--RQPGWEANSCGYHGDDGLLYRGQGK-GEAFGPTFTTNDTVGGGINYASQEFFFTKN--G-SLVGAVYKD-- 186 (463)
Q Consensus 115 ~~~~~~~--~~~G~~~~S~gy~~~~G~~~~~~~~-~~~yg~~~~~GDvIGcgid~~~~~ifFtkN--G-~~lg~af~~-- 186 (463)
.+..+-. ...|.+..+|+..-.+|. |..... ....- .-.....||+.+|++.|+|.|+-- + ..+- .|..
T Consensus 82 ~~si~Rkg~~~~~~~~~~W~l~~~~~~-y~~~~~~~~~l~-~~~~~~rVGVfLDye~G~lSFY~v~~~~~~I~-tF~~~~ 158 (188)
T 2vok_A 82 RDSVQRKGQFSLSPENGFWTIWLWQDS-YEAGTSPQTTLH-IQVPPCQIGIFVDYEAGVVSFYNITDHGSLIY-TFSECV 158 (188)
T ss_dssp ETTCCCSSCCCCSTTTTEEEEEEETTE-EEECSSSCEEEC-CSSCCSEEEEEEETTTTEEEEEETTTTTEEEE-EECSCC
T ss_pred eCCcCCCCccccCCCCCEEEEEEECCE-EEEEeCCccCEe-cCCCCCEEEEEEEcCCCEEEEEECCCCCeeeE-EecCCC
Confidence 8876432 245778889999876665 542111 11111 113568999999999999999953 3 3333 3554
Q ss_pred CCCCcccEEEEcc
Q 012451 187 IKGPLFPTIAVHS 199 (463)
Q Consensus 187 i~~~lyP~V~~~~ 199 (463)
..+++||.+++..
T Consensus 159 Fs~pL~P~F~~~~ 171 (188)
T 2vok_A 159 FAGPLRPFFNVGF 171 (188)
T ss_dssp CCSCEEEEEECCC
T ss_pred CCCCEEeEEEecc
Confidence 4789999999864
No 7
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=99.21 E-value=5.5e-10 Score=103.67 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=103.4
Q ss_pred CccccCCCCCCCceEEcCCCcEEEEcccccc--c-----cceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEeeCC
Q 012451 44 PTELNTINSSGGFLVVSPDKLSVKYTSVNLH--G-----HDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSE 116 (463)
Q Consensus 44 p~~w~~~~~~~~~~~ls~d~l~v~~~~~~~~--~-----~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~~~ 116 (463)
+.+||+ +..+..|.||+|+.+|++...... . ..+..|.+...+. +|+|||||++.. ...+.||+|.+
T Consensus 11 ~~tLDp-~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fs--SGrHYWEVev~~---~~~w~vGV~~~ 84 (201)
T 2fbe_A 11 DMTFDV-DTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFT--SGRHYWEVDVGT---SQVWDVGVCKE 84 (201)
T ss_dssp CCCEET-TTCCTTEEECTTSSEEEECSSCCCCCCCTTSCSSSCEEEESCCBS--SSEEEEEEECTT---CSEEEEEEEET
T ss_pred eEEECc-ccCCCceEECCCCcEEEECCccCCCCCCccceeeccceecCcccc--CCceEEEEEeCC---CCEEEEEEeeC
Confidence 578898 447789999999999999763210 0 1256889999874 899999999943 35799999998
Q ss_pred CCCCCC--CCCCCCCeeEEEcCCCcEEecCC-CCcccCCCCCCCCeEEEEEeccCcEEEEEE--CCeeecccccc--CCC
Q 012451 117 SFKMRR--QPGWEANSCGYHGDDGLLYRGQG-KGEAFGPTFTTNDTVGGGINYASQEFFFTK--NGSLVGAVYKD--IKG 189 (463)
Q Consensus 117 ~~~~~~--~~G~~~~S~gy~~~~G~~~~~~~-~~~~yg~~~~~GDvIGcgid~~~~~ifFtk--NG~~lg~af~~--i~~ 189 (463)
...-.. ..|.+..+|...-.+|..|.... ..... +.-.....||+.+|++.|+|.|+- ++..+- .|.. ..+
T Consensus 85 si~Rkg~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~l-~~~~~~~rVGVfLDye~G~lSFY~v~~~~~i~-tF~~~~Fs~ 162 (201)
T 2fbe_A 85 SVNRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPL-WVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIY-TFIEIPVCE 162 (201)
T ss_dssp TSCCSSCCCCCTTTTEEEEEEETTTEEEECSSSCEEE-CCCTTCCEEEEEEETTTTEEEEEETTTTEEEE-EECSCCCSS
T ss_pred ccCCCCcccccCCCCEEEEEEeCCCEEEEEcCCcccC-ccCCCCCEEEEEEEcCCCEEEEEeCCCCceeE-EEcCCCCCC
Confidence 764332 24566789998875566554321 11111 112356899999999999999995 344333 3554 478
Q ss_pred CcccEEEEc
Q 012451 190 PLFPTIAVH 198 (463)
Q Consensus 190 ~lyP~V~~~ 198 (463)
++||.+++.
T Consensus 163 pL~P~F~~~ 171 (201)
T 2fbe_A 163 PWRPFFAHK 171 (201)
T ss_dssp CEEEEEEEE
T ss_pred CEEeEEEec
Confidence 999999986
No 8
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=99.19 E-value=2.2e-10 Score=105.17 Aligned_cols=142 Identities=20% Similarity=0.228 Sum_probs=98.9
Q ss_pred ccccCCCCCCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEeeCCCCCCC---
Q 012451 45 TELNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSESFKMR--- 121 (463)
Q Consensus 45 ~~w~~~~~~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~~~~~~~~--- 121 (463)
+++|+.. .+ .+.||+|+++|++.. ...|.+...+. +|+|||||+|.. ...+.||+|.......
T Consensus 14 vTLDp~T-A~-~l~lSed~r~Vr~~~-------~~~VLG~~~ft--sGrHYWEVeV~~---~~~W~vGV~~~~~~r~~~~ 79 (186)
T 3uv9_A 14 VTLATNN-IS-HAVIAEDKRQVSSRA-------GTGVLGSQSIT--SGKHYWEVDVSK---KSAWILGVCAGFQSDAMYN 79 (186)
T ss_dssp CCCCCCS-SC-CCEECTTSSCEECCC-------SSCEECSSCBC--SSEEEEEEECTT---CSCEEEEEESCSTTTTTTT
T ss_pred eEeCCCC-cC-CceECCCCCEEeecC-------CCcCcCCCCCC--CCCEEEEEEEcC---CCcEEEEEEEEEecccccc
Confidence 5678843 45 489999999998764 24589999874 899999999843 4579999997654321
Q ss_pred ----CCCCCCCCeeEEEcCCCcEE---ecCCCCcccCC------CCCCCCeEEEEEeccCcEEEEEE--C-Ceeeccccc
Q 012451 122 ----RQPGWEANSCGYHGDDGLLY---RGQGKGEAFGP------TFTTNDTVGGGINYASQEFFFTK--N-GSLVGAVYK 185 (463)
Q Consensus 122 ----~~~G~~~~S~gy~~~~G~~~---~~~~~~~~yg~------~~~~GDvIGcgid~~~~~ifFtk--N-G~~lg~af~ 185 (463)
...|.+.++|+..-.+|..| ++.......++ .-.....||+.+|++.|+|.|+= | +..+- .|.
T Consensus 80 ~~~~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~p~rVGVfLDye~G~lSFYnv~d~~~lI~-tF~ 158 (186)
T 3uv9_A 80 IEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEACTVSFFNITNHGFLIY-KFS 158 (186)
T ss_dssp HHHHTCCCGGGTEEEEEEETTTEEEEEECCCTTSTTSCEEEECCCSSCCSEEEEEEETTTTEEEEEETTTTTEEEE-EEC
T ss_pred cCCCcccCCCCCEEEEEECCCCEEEEEeCCCccccCCCccCcccccccCCEEEEEeecCCCEEEEEeCCCCceEEE-EeC
Confidence 24677788999876566654 33322222322 12356899999999999999982 3 33333 354
Q ss_pred c--CCCCcccEEEEccCC
Q 012451 186 D--IKGPLFPTIAVHSQN 201 (463)
Q Consensus 186 ~--i~~~lyP~V~~~~~~ 201 (463)
. ..+++||.+++...+
T Consensus 159 ~~~Fs~pL~P~F~~~~~~ 176 (186)
T 3uv9_A 159 QCSFSKPVFPYLNPRKCT 176 (186)
T ss_dssp SCCCSSCBEEEEECTTCC
T ss_pred CcCCCCCEEeEEECCCCC
Confidence 3 378999999987533
No 9
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=99.18 E-value=4.9e-10 Score=103.26 Aligned_cols=148 Identities=17% Similarity=0.108 Sum_probs=102.2
Q ss_pred CccccCCCCCCCceEEcCCCcEEEEcccccc-c------cceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEeeCC
Q 012451 44 PTELNTINSSGGFLVVSPDKLSVKYTSVNLH-G------HDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFTSE 116 (463)
Q Consensus 44 p~~w~~~~~~~~~~~ls~d~l~v~~~~~~~~-~------~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~~~ 116 (463)
+.+||+ +..++.|.||+|+.+|++...... . ..+..|.+...+. +|+|||||++.. ...+.||+|.+
T Consensus 14 ~~tLDp-~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~~~~~VLg~~~fs--sGrHYWEVev~~---~~~w~vGV~~~ 87 (191)
T 2wl1_A 14 NVILDA-ETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFDSCIIVLGSPSFL--SGRRYWEVEVGD---KTAWILGACKT 87 (191)
T ss_dssp CCEECT-TTSCTTEEECTTSCEEEECCTTCCCCCCTTSCSSSCCEEEECCBC--SSEEEEEEECTT---CSCEEEEEEET
T ss_pred eeEECC-ccCCCceEECCCCcEEEECCcCCCCCCCcccccccccccCccccc--CCCEEEEEEeCC---CCEEEEEEeeC
Confidence 678999 447889999999999999763210 0 1255788888874 899999999843 35799999988
Q ss_pred CCCCCC--CCCCCCCeeEEEcCCCcEEecCC-CCcccCCCCCCCCeEEEEEeccCcEEEEEE--CCeeecccccc--CCC
Q 012451 117 SFKMRR--QPGWEANSCGYHGDDGLLYRGQG-KGEAFGPTFTTNDTVGGGINYASQEFFFTK--NGSLVGAVYKD--IKG 189 (463)
Q Consensus 117 ~~~~~~--~~G~~~~S~gy~~~~G~~~~~~~-~~~~yg~~~~~GDvIGcgid~~~~~ifFtk--NG~~lg~af~~--i~~ 189 (463)
...-.. ..|.+..+|+..-.++..|.... ..... ..-.....||+.+|++.|+|.|+- ++..+- .|.. ..+
T Consensus 88 s~~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~l-~~~~~~~rVGVfLDye~G~lSFY~v~~~~~i~-tF~~~~Fs~ 165 (191)
T 2wl1_A 88 SISRKGNMTLSPENGYWVVIMMKENEYQASSVPPTRL-LIKEPPKRVGIFVDYRVGSISFYNVTARSHIY-TFASCSFSG 165 (191)
T ss_dssp TCCSSSCCCCCGGGTEEEEEEEETTEEEECCSSCEEC-CCSSCCSEEEEEEETTTTEEEEEETTTTEEEE-EECCCCCCS
T ss_pred CcCCCCccccCCCCCEEEEEEeCCCEEEEEcCCCccC-ccccCCcEEEEEEEcCCCEEEEEECCCCcceE-EeCCCCCCC
Confidence 764322 35666788998754344443211 11111 112356899999999999999995 344443 3554 478
Q ss_pred CcccEEEEcc
Q 012451 190 PLFPTIAVHS 199 (463)
Q Consensus 190 ~lyP~V~~~~ 199 (463)
++||++++..
T Consensus 166 pl~P~F~~~~ 175 (191)
T 2wl1_A 166 PLQPIFSPGT 175 (191)
T ss_dssp CEEEEEECCC
T ss_pred CEEeEEEccc
Confidence 9999998863
No 10
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=99.01 E-value=1.4e-08 Score=93.55 Aligned_cols=149 Identities=16% Similarity=0.154 Sum_probs=100.0
Q ss_pred CCccccCCCCCCCceEEcCCCcEEEEcccc-cc----c---cceEEEEecccccCCCCeEEEEEEEEecCCCCeEEEEee
Q 012451 43 VPTELNTINSSGGFLVVSPDKLSVKYTSVN-LH----G---HDVGVVQANKPAPVKRLVYYFEIYVKDAGAKGQIAIGFT 114 (463)
Q Consensus 43 ~p~~w~~~~~~~~~~~ls~d~l~v~~~~~~-~~----~---~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~~i~IG~~ 114 (463)
...++|+ +..+..+.||+|+.+|++.... .. . ..+..|.+...+. +|+|||||++.. ...+.||+|
T Consensus 12 ~~vtLDp-~TA~~~L~lSed~~~v~~~~~~~q~~p~~p~RF~~~~~VLg~~~fs--sGrhYWEVev~~---~~~W~lGV~ 85 (193)
T 3kb5_A 12 EELTFDP-SSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFDKAVAVVAHQQLS--EGEHYWEVDVGD---KPRWALGVI 85 (193)
T ss_dssp CCCCBCT-TTSCTTEEEETTTTEEEECCSCCCCCCSCTTSCSSSCEEEBSCCBC--SSEEEEEEECTT---CSSEEEEEE
T ss_pred ccEEECC-CCCCCCEEECCCCCEEEECCcCCCCCCCCccccccccEEccCCccc--CCCEEEEEEeCc---CceEEEEEe
Confidence 4478899 4478899999999999997642 10 0 1256889999874 899999999853 357999999
Q ss_pred CCCCCCCC--CCCCCCCeeEEEcCCCcEEecCCC-Ccc--cCCCCCCCCeEEEEEeccCcEEEEEE--C---Ceeecccc
Q 012451 115 SESFKMRR--QPGWEANSCGYHGDDGLLYRGQGK-GEA--FGPTFTTNDTVGGGINYASQEFFFTK--N---GSLVGAVY 184 (463)
Q Consensus 115 ~~~~~~~~--~~G~~~~S~gy~~~~G~~~~~~~~-~~~--yg~~~~~GDvIGcgid~~~~~ifFtk--N---G~~lg~af 184 (463)
.+...-.. ..+.+.++|+..-.+|..|..... ... ...+-..-..||+.+|++.|+|.|+- + +..+-+ |
T Consensus 86 ~~s~~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~~~l~~~~~~~~rVGVfLDye~G~lSFY~v~~~~~~s~I~t-F 164 (193)
T 3kb5_A 86 AAEAPRRGRLHAVPSQGLWLLGLREGKILEAHVEAKEPRALRSPERRPTRIGLYLSFGDGVLSFYDASDADALVPLFA-F 164 (193)
T ss_dssp ETTSCCSSSCCCSGGGTEEEEEEETTTEEEECCSSSSCEECCCCSSCCSEEEEEEETTTTEEEEEECCSTTCCEEEEE-E
T ss_pred eCCcCcCCCcCCCCCCCEEEEEEeCCCEEEEEeCCCccEEEeecCCCCCEEEEEEEcCCCEEEEEeCCCCCCceEEEE-e
Confidence 98764322 233456789887655654432111 111 11101345699999999999999983 2 244443 4
Q ss_pred cc-CCCCcccEEEEc
Q 012451 185 KD-IKGPLFPTIAVH 198 (463)
Q Consensus 185 ~~-i~~~lyP~V~~~ 198 (463)
.. ..+++||.+++.
T Consensus 165 ~~~Ft~pl~P~F~~~ 179 (193)
T 3kb5_A 165 HERLPRPVYPFFDVC 179 (193)
T ss_dssp CSCCCSCEEEEEECC
T ss_pred CCCCCCCeECEEEcc
Confidence 33 378999999874
No 11
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=9e-08 Score=86.10 Aligned_cols=155 Identities=17% Similarity=0.238 Sum_probs=107.5
Q ss_pred CCccccCCCCCCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEec--CCCCeEEEEeeCCCC-C
Q 012451 43 VPTELNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDA--GAKGQIAIGFTSESF-K 119 (463)
Q Consensus 43 ~p~~w~~~~~~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~--~~~~~i~IG~~~~~~-~ 119 (463)
.+.++.+. ++..+.|++|+.+++...+.. +..-+.|.+..|+.+. . .|+|+|... +-.|.+.||+++-+- .
T Consensus 5 ~~l~FH~~--hG~nI~L~~~~~~A~R~~~~~-~f~~givFS~rPl~~~-E--~~~v~I~~~~~~wsG~l~~GvT~~dP~~ 78 (170)
T 2e63_A 5 SSGELHPR--TGRLVSLSACGRTARRQQPGQ-EFNHGLVLSREPLRDG-R--VFTVRIDRKVNSWSGSIEIGVTALDPSV 78 (170)
T ss_dssp CSSCCCSC--CCSSEEECSSSCEEEESCTTT-CSCSCCEEEEEEECTT-C--EEEEEEEEECCSSCCCCEEEEESSCTTS
T ss_pred cccccccc--cCCCeEECCCCeEEEeCCCCc-ccCceEEEECCCCCCC-C--EEEEEEEeecCCcceeEEEEEEccChhh
Confidence 44566663 577899999999999873110 1246789999999754 3 466666654 345799999998632 1
Q ss_pred CC---CCCCCCCCeeEEEcCCCcEEecCCCCcccCC---CCCCCCeEEEEEeccCcEEEEEECCeeeccccccCCCCccc
Q 012451 120 MR---RQPGWEANSCGYHGDDGLLYRGQGKGEAFGP---TFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFP 193 (463)
Q Consensus 120 ~~---~~~G~~~~S~gy~~~~G~~~~~~~~~~~yg~---~~~~GDvIGcgid~~~~~ifFtkNG~~lg~af~~i~~~lyP 193 (463)
+. ..+.-..++|.+.+ .+-..++....+.||. ++..||+||+.++. +|+++|.+||...|+++.+++.++|+
T Consensus 79 l~lP~~~~~L~~~~Wv~~~-~~v~~ng~~~~e~~~~~l~~l~~Gd~ig~~~~~-~G~l~~~iNg~~~g~~~~~ip~~Lwa 156 (170)
T 2e63_A 79 LDFPSSATGLKGGSWVVSG-CSVLRDGRSVLEEYGQDLDQLGEGDRVGVERTV-AGELRLWVNGRDCGVAATGLPPRVWA 156 (170)
T ss_dssp CCCCSSGGGCCSSEEEESS-SEEEESSCEEEESCSSCGGGCCSSCCEEEEECT-TSCEEEEESSCEEEEEECCCCSCEEE
T ss_pred ccCCCChhhCCCCeEEEec-cccccCCcccchhccccccccCCCCEEEEEEcC-CcEEEEEECCccceeeEcCCCCcEEE
Confidence 11 11223457899875 1222222122455775 56799999999985 59999999999999999999889999
Q ss_pred EEEEccCCeEEE
Q 012451 194 TIAVHSQNEEVL 205 (463)
Q Consensus 194 ~V~~~~~~~~v~ 205 (463)
.|-+++.-.+|+
T Consensus 157 vvDvyG~t~~V~ 168 (170)
T 2e63_A 157 VVDLYGKCTQIT 168 (170)
T ss_dssp EEECCTTEEEEE
T ss_pred EEEccCCEEEEE
Confidence 999996444554
No 12
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=98.68 E-value=2.7e-07 Score=99.35 Aligned_cols=148 Identities=19% Similarity=0.206 Sum_probs=96.9
Q ss_pred CccccCCCCCCCceEEcCCCcEEEEcccc----------------ccccceEEEEecccccCCCCeEEEEEEEEecCCCC
Q 012451 44 PTELNTINSSGGFLVVSPDKLSVKYTSVN----------------LHGHDVGVVQANKPAPVKRLVYYFEIYVKDAGAKG 107 (463)
Q Consensus 44 p~~w~~~~~~~~~~~ls~d~l~v~~~~~~----------------~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~~~~~ 107 (463)
-+++||.. .+ .+.||+|++.|++.... .+ ....+|.+...+ ++|+|||||+|. ...
T Consensus 411 ~vtldp~t-a~-~l~~s~d~r~v~~~~~~~~~~~p~~~~~~~~~~rF-~~~~~VLg~~~f--~sGrhyWEV~v~---~~~ 482 (602)
T 4b3n_A 411 DVTLATNN-IS-HAVIAEDKRQVSSRNPQIMYQAPGTLFTFPSLTNF-NYCTGVLGSQSI--TSGKHYWEVDVS---KKS 482 (602)
T ss_dssp CCCEECCS-CC-SCEECTTSSEEECCCC---------------------CCCCEEESSCB--SSSEEEEEEECT---TCS
T ss_pred EEEeCCCC-CC-ceeEecCCCEEEECCccccccCCCccCCCCCcccC-CCCCEeccCCCC--CCEEEEEEEEEC---CCe
Confidence 46888844 45 58899999999975421 11 124468888877 489999999984 445
Q ss_pred eEEEEeeCCCCCC-------CCCCCCCCCeeEEEcCCCcEEe---cCCCCcccCCC---C---CCCCeEEEEEeccCcEE
Q 012451 108 QIAIGFTSESFKM-------RRQPGWEANSCGYHGDDGLLYR---GQGKGEAFGPT---F---TTNDTVGGGINYASQEF 171 (463)
Q Consensus 108 ~i~IG~~~~~~~~-------~~~~G~~~~S~gy~~~~G~~~~---~~~~~~~yg~~---~---~~GDvIGcgid~~~~~i 171 (463)
.+.||+|...... ....+...++|+..-.+|..|. +........+. . ..-..||+.+|++.|+|
T Consensus 483 ~w~~Gv~~~~~~~~~~~~~~~~~~~~~~g~w~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~rvgv~ld~~~g~~ 562 (602)
T 4b3n_A 483 AWILGVCAGFQSDAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEACTV 562 (602)
T ss_dssp CEEEEEECCCCTTTSSTHHHHCCCCGGGTEEEEEEETTTEEEEEECCCSSCCSSCEEEECCCSSCCSEEEEEEETTTTEE
T ss_pred eEEEEEeeccccccccccCCCcccCCCCcEEEEEEecCCeEEEEeCCCcccccCCcccccccCCCCCEEEEEEecCCCEE
Confidence 7999998753321 1134556678998765676553 32222222221 1 23468999999999999
Q ss_pred EEEE--C-Ceeecccccc--CCCCcccEEEEccC
Q 012451 172 FFTK--N-GSLVGAVYKD--IKGPLFPTIAVHSQ 200 (463)
Q Consensus 172 fFtk--N-G~~lg~af~~--i~~~lyP~V~~~~~ 200 (463)
+|+- + |..+.+ |.. ..+++||.+++...
T Consensus 563 sFy~~~~~~~~i~t-f~~~~f~~~l~P~f~~~~~ 595 (602)
T 4b3n_A 563 SFFNITNHGFLIYK-FSQCSFSKPVFPYLNPRKC 595 (602)
T ss_dssp EEEETTTTTEEEEE-ECSCCCCSCBEEEEECTTC
T ss_pred EEEeCCCCceeeEe-CCCcCCCCCEeCeEECCCC
Confidence 9994 3 444443 543 37899999998643
No 13
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=98.17 E-value=4.5e-05 Score=68.29 Aligned_cols=141 Identities=13% Similarity=0.213 Sum_probs=100.0
Q ss_pred CCCccccCCCCCCCceEEcCCCcEEEEccccccccceEEEEecccccCCCCeEEEEEEEEec--CCCCeEEEEeeCCCC-
Q 012451 42 EVPTELNTINSSGGFLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVKDA--GAKGQIAIGFTSESF- 118 (463)
Q Consensus 42 ~~p~~w~~~~~~~~~~~ls~d~l~v~~~~~~~~~~~~~~vra~~~i~~~~g~~YfEV~I~~~--~~~~~i~IG~~~~~~- 118 (463)
..|.++.+ . ++..+.|++|+.+++.... ..-+.|.+++|+.... .|+|+|... +-.|.+.||+++-+-
T Consensus 6 ~~~l~FH~-~-~G~nI~L~~~~~~A~R~~s----f~~givFS~RPl~~~E---~~~v~I~~~~~~wsG~l~~GvT~~dP~ 76 (168)
T 2yue_A 6 SGPLQFHS-V-HGDNIRISRDGTLARRFES----FCRAITFSARPVRINE---RICVKFAEISNNWNGGIRFGFTSNDPV 76 (168)
T ss_dssp CSSCCEEE-E-ECTTEEECCSSCCEEECSC----SSCCEEEESSCCCSSC---CEEEEEEECCSSSSSCCEEEEESSCGG
T ss_pred CCCccccc-c-cCCCeEECCCCcEEEeccc----CCceEEEECCCCcCCC---EEEEEEEeecCCcceeEEEeeeecCHH
Confidence 34455655 2 4778999999999998632 2468899999997542 467777654 345799999998642
Q ss_pred CCC-CCCCC-------CCCeeEEEcCCCcEEecCCCCcccCCCCCCCCeEEEEEeccCcEEEEEECCeeeccccccC--C
Q 012451 119 KMR-RQPGW-------EANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDI--K 188 (463)
Q Consensus 119 ~~~-~~~G~-------~~~S~gy~~~~G~~~~~~~~~~~yg~~~~~GDvIGcgid~~~~~ifFtkNG~~lg~af~~i--~ 188 (463)
.+. .+|-. ....|+.. ....|+ ..||+||..++ .+|+++|.+||...|.++.++ .
T Consensus 77 ~l~~~lP~~a~~dL~~~~~~W~~~-----------l~~~~~---~~g~~l~f~v~-~~G~l~~~iNg~~~g~~~~~V~~~ 141 (168)
T 2yue_A 77 TLEGTLPKYACPDLTNRPGFWAKA-----------LHEQYC---EKDNILYYYVN-GAGDVIYGINNEEKGVILTGIDTR 141 (168)
T ss_dssp GTTTCCCSSSSSHHHHSTTBCCEE-----------CCSTTC---CSSCEEEEEEC-TTSEEEEEESSCEEEEEEECCCCS
T ss_pred HcCCCCCCcCchHHhcCCCEEEEE-----------eccccc---cCCCEEEEEEc-CCCEEEEEECCCccEEEEcCCCCC
Confidence 222 22321 12455432 112232 57999999998 579999999999999999877 4
Q ss_pred CCcccEEEEccCCeEEEE
Q 012451 189 GPLFPTIAVHSQNEEVLV 206 (463)
Q Consensus 189 ~~lyP~V~~~~~~~~v~~ 206 (463)
.++|+.|-+++.-.+|++
T Consensus 142 ~pLwavvDvyG~t~~V~i 159 (168)
T 2yue_A 142 SLLWTVIDIYGNCTGIEF 159 (168)
T ss_dssp SCCEEEEECCSSCSEEEE
T ss_pred CceEEEEEccCCeEEEEE
Confidence 689999999976667775
No 14
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=86.11 E-value=0.61 Score=36.56 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=26.7
Q ss_pred chhHHHHHHHHhcChHHHHHHHHHhcCCC
Q 012451 241 VSYGLVRSYLQHYGYEDTLNSFDLAGKTT 269 (463)
Q Consensus 241 ~l~~LI~~yL~~~Gy~eta~af~~es~~~ 269 (463)
.+|+-|.+||...||.+++.+|.+|+++.
T Consensus 12 EL~kaI~~YL~~~~~~~~~~alr~e~~~~ 40 (88)
T 1uuj_A 12 ELNRAIADYLRSNGYEEAYSVFKKEAELD 40 (88)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhcCC
Confidence 57899999999999999999999998854
No 15
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=81.58 E-value=0.86 Score=35.89 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=31.1
Q ss_pred CCCcchhHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Q 012451 237 LPPNVSYGLVRSYLQHYGYEDTLNSFDLAGKTTVPP 272 (463)
Q Consensus 237 l~~~~l~~LI~~yL~~~Gy~eta~af~~es~~~~~~ 272 (463)
+..+.+|.||-.||...||..||-+|.+|+++...+
T Consensus 3 itsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~ 38 (90)
T 2xtc_A 3 ITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSN 38 (90)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence 455678999999999999999999999999875433
No 16
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=73.75 E-value=3.8 Score=31.60 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=27.5
Q ss_pred cchhHHHHHHHHhcChHHHHHHHHHhcCCC
Q 012451 240 NVSYGLVRSYLQHYGYEDTLNSFDLAGKTT 269 (463)
Q Consensus 240 ~~l~~LI~~yL~~~Gy~eta~af~~es~~~ 269 (463)
..++.||++||...||.=|+..|.-|++..
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 357899999999999999999999999964
No 17
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=61.55 E-value=1.7 Score=43.12 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHhcChHHHHHHHHHhcCCC
Q 012451 240 NVSYGLVRSYLQHYGYEDTLNSFDLAGKTT 269 (463)
Q Consensus 240 ~~l~~LI~~yL~~~Gy~eta~af~~es~~~ 269 (463)
+.++++|++||..+||.+++++|.+|.++.
T Consensus 9 ~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~ 38 (410)
T 1vyh_C 9 DELNRAIADYLRSNGYEEAYSVFKKEAELD 38 (410)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHhCCC
Confidence 468999999999999999999999998753
No 18
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=60.54 E-value=8.8 Score=33.23 Aligned_cols=63 Identities=13% Similarity=0.045 Sum_probs=48.7
Q ss_pred ceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHHHHHHhhheeeecCCCCCchhhcC
Q 012451 326 STCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALLAYEKPQESSVGYLL 390 (463)
Q Consensus 326 ~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~~l~~~~~LLay~~~~~sp~~~ll 390 (463)
.+.|=|.+.-||+||.+|...+|-+|.++.-..+. ..+.+.|+.+.++.-=.+..+.++...+
T Consensus 51 ~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~--~~~~~~i~~L~~i~~~~~l~~n~~~~~f 113 (156)
T 2nxp_A 51 QLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQE--CYYQDDLRVLSSLTKKEHMKGNETMLDF 113 (156)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSC--GGGHHHHHHHHTCCSHHHHTTCGGGGGG
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhH--HHHHHHHHHHhcCCCHHHHhhcHHHHHH
Confidence 57888999999999999999999999887555553 6778899999887665555555544444
No 19
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=46.47 E-value=19 Score=30.42 Aligned_cols=48 Identities=10% Similarity=0.205 Sum_probs=37.7
Q ss_pred ceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHHHHHHhhhee
Q 012451 326 STCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALL 376 (463)
Q Consensus 326 ~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~~l~~~~~LL 376 (463)
.+.|=|.+.-|||||.+|..++|-+|..+.-..+. .. .+.|+.+.++.
T Consensus 32 ~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~--~~-~~~i~~L~~i~ 79 (138)
T 2j4b_A 32 PLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY--NK-SEEIKQFESIY 79 (138)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----C-HHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHh--hH-HHHHHHHhcCC
Confidence 58899999999999999999999999887655553 23 67787777654
No 20
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=45.93 E-value=15 Score=31.43 Aligned_cols=48 Identities=8% Similarity=-0.018 Sum_probs=37.6
Q ss_pred ceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHHHHHHhhhee
Q 012451 326 STCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCVALL 376 (463)
Q Consensus 326 ~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~~l~~~~~LL 376 (463)
.+.|=|.+.-||+||.+| .++|-+|..+.-..+. ..+...|+.+.++.
T Consensus 34 ~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~--~~~~~~i~~L~~i~ 81 (148)
T 2j49_A 34 YIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFK--DFHGSEINRLFSVN 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGH--HHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhH--HHHHHHHHHHhcCC
Confidence 578889999999999999 9999888887655553 45667777776653
No 21
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=37.43 E-value=1.1e+02 Score=22.05 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=37.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhhCCcchhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 012451 295 TLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKY 359 (463)
Q Consensus 295 ~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~ 359 (463)
.-..++..|++++|++.+... ++.++.... .++...=.-+.+.|+.++|+++.++-+.-.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~a----l~~~p~~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEF----LQTEPVGKD-EAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH----HHHCSSTHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHH----HHHCCCcHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456678899999999998763 333332211 011111222345689999999999876554
No 22
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=36.03 E-value=32 Score=27.48 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=26.9
Q ss_pred ehhhhHHHHHHHhcCC---HHHHHHHHHHHHhhhc
Q 012451 329 FLLHCQKFIELVRVGA---LEEAVKYGRMELAKYF 360 (463)
Q Consensus 329 F~L~~qkfIElir~~~---~~eAl~~ar~~l~~~~ 360 (463)
|-=...+.+|||+.+. ...|+.|+++.+..+.
T Consensus 51 faPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~ 85 (104)
T 4a18_Q 51 FAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHR 85 (104)
T ss_dssp CCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHH
T ss_pred CchhHHHHHHHHHcccchhhHHHHHHHHHHhhhHH
Confidence 4556778999999999 8999999999887663
No 23
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=30.66 E-value=41 Score=24.60 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=25.3
Q ss_pred chhHHHHHHHHhcChHHHHHHHHHhcCC
Q 012451 241 VSYGLVRSYLQHYGYEDTLNSFDLAGKT 268 (463)
Q Consensus 241 ~l~~LI~~yL~~~Gy~eta~af~~es~~ 268 (463)
.+.|||.+=|...||...|..|....+.
T Consensus 18 ~LYrLIISQL~YDG~~~iA~~L~~~v~~ 45 (66)
T 2xz2_A 18 ILYRLMISQLMYDGLEKFAMELSMLVKA 45 (66)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 4779999999999999999999998874
No 24
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=29.57 E-value=47 Score=25.20 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=16.2
Q ss_pred CCCCcchhHHHHHHHHhcCh
Q 012451 236 SLPPNVSYGLVRSYLQHYGY 255 (463)
Q Consensus 236 ~l~~~~l~~LI~~yL~~~Gy 255 (463)
.++++.++.||.+|+.++|-
T Consensus 9 ~L~~eTL~nLIeefv~Regt 28 (78)
T 1y0n_A 9 LLEADTLNNLLEDFVTREGT 28 (78)
T ss_dssp GSCHHHHHHHHHHHHHCC--
T ss_pred hCCHHHHHHHHHHHHhcccc
Confidence 46788899999999999994
No 25
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=27.57 E-value=2.2e+02 Score=22.28 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=28.6
Q ss_pred HHHHHcCCHHHHHHHHHhhCCcchhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHH
Q 012451 297 RQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRME 355 (463)
Q Consensus 297 r~~Il~G~id~Al~~l~~~~p~ll~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~ 355 (463)
.-....|++++|++++.+. ++.++..............+++.++.++|+++.++.
T Consensus 89 ~~~~~~~~~~~A~~~~~~a----~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETV----VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHH----HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 3456678888888777653 222221111222222333344566777777776643
No 26
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=26.75 E-value=20 Score=28.48 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=31.1
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHHHHHHhh
Q 012451 332 HCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQDCV 373 (463)
Q Consensus 332 ~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~~l~~~~ 373 (463)
...+-+|||+.+....|+.|+++.+..+.....-.++|+.+.
T Consensus 53 YErr~mELLkvskdKrAlKf~KKRlGth~RAKrKreel~~vl 94 (100)
T 3izc_k 53 YERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNII 94 (100)
T ss_dssp SCCHHHHHHHHHTSCCSHHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 346789999999888999999999988864333445555444
No 27
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.77 E-value=69 Score=23.49 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=18.3
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhhCCc
Q 012451 293 RKTLRQLIR--NGEIDAAFDKLRNWHPW 318 (463)
Q Consensus 293 R~~Ir~~Il--~G~id~Al~~l~~~~p~ 318 (463)
|+..++++. .||++.|++||-.+-++
T Consensus 34 ~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 34 YNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 445344443 68999999999887653
No 28
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=25.59 E-value=2.2e+02 Score=21.53 Aligned_cols=95 Identities=11% Similarity=0.041 Sum_probs=53.4
Q ss_pred hHHHHHHHHhcChHHHHHHHHHhcCCCCCCcccccccCCCcchhhhhHHHHHHHHHHHHcCCHHHHHHHHHhhCCcchhc
Q 012451 243 YGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQD 322 (463)
Q Consensus 243 ~~LI~~yL~~~Gy~eta~af~~es~~~~~~~~~~~~~~~~e~~~~~~~~~R~~Ir~~Il~G~id~Al~~l~~~~p~ll~~ 322 (463)
..+-..|+...-|.++...|.+.... .|... ... ...-.-....|++++|++.+..- ++.
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~-------------~~~--~~~a~~~~~~~~~~~A~~~~~~a----l~~ 67 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKR-APEDA-------------RGY--SNRAAALAKLMSFPEAIADCNKA----IEK 67 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCH-------------HHH--HHHHHHHHHTTCHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCh-------------HHH--HHHHHHHHHhcCHHHHHHHHHHH----HHh
Confidence 34455566666777777777765542 11110 111 22344566789999999988753 333
Q ss_pred CCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 012451 323 DKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKY 359 (463)
Q Consensus 323 ~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~ 359 (463)
++.. ...+...=.=+...|+.++|+++.++-+.-.
T Consensus 68 ~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 68 DPNF--VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp CTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCc--HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 3321 1122222223345688999999988766443
No 29
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=24.89 E-value=2.1e+02 Score=21.07 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=34.3
Q ss_pred HHHHHHcCCHHHHHHHHHhhCCcchhcCCC--ceeehhhhHHHHHHHhcCCHHHHHHHHHHHHh
Q 012451 296 LRQLIRNGEIDAAFDKLRNWHPWIVQDDKS--STCFLLHCQKFIELVRVGALEEAVKYGRMELA 357 (463)
Q Consensus 296 Ir~~Il~G~id~Al~~l~~~~p~ll~~~~s--~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~ 357 (463)
=.-++..|++++|++.+... ++.++. ...+.| =.=+.+.|+.++|+++.++-+.
T Consensus 14 g~~~~~~g~~~~A~~~~~~a----l~~~p~~~~a~~~l----g~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 14 AQEHLKHDNASRALALFEEL----VETDPDYVGTYYHL----GKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHTTCHHHHHHHHHHH----HHHSTTCTHHHHHH----HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH----HHhCCCcHHHHHHH----HHHHHHcCCHHHHHHHHHHHHh
Confidence 34567889999999998763 333331 222221 1223456899999999987654
No 30
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=24.80 E-value=2.5e+02 Score=21.87 Aligned_cols=105 Identities=16% Similarity=0.063 Sum_probs=57.7
Q ss_pred HHHHHHHhcChHHHHHHHHHhcCCCCCCcccccccCCCcchhhhhHHHHHHHHHHHHcCCHHHHHHHHHhhCCcchhcCC
Q 012451 245 LVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQDDK 324 (463)
Q Consensus 245 LI~~yL~~~Gy~eta~af~~es~~~~~~~~~~~~~~~~e~~~~~~~~~R~~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~ 324 (463)
+=..|+...-|.++...|.+.... .|... ..... .-.-....|++++|++.+..- ++.++
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~-~p~~~-------------~~~~~--~~~~~~~~~~~~~A~~~~~~a----l~~~p 78 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKR-DPENA-------------ILYSN--RAACLTKLMEFQRALDDCDTC----IRLDS 78 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTCH-------------HHHHH--HHHHHHHTTCHHHHHHHHHHH----HHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCCH-------------HHHHH--HhhHHHhhccHHHHHHHHHHH----HHhhh
Confidence 334566666677888888766542 12110 11222 234456789999999988753 33333
Q ss_pred CceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcchHHHHHH
Q 012451 325 SSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGFEELVQD 371 (463)
Q Consensus 325 s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~~~~l~~ 371 (463)
.. ...+...=.=+...|+.++|+++.++-+.--..+......|.+
T Consensus 79 ~~--~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 79 KF--IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hh--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 22 1222222223355689999999999766543233333334433
No 31
>3zx7_A Lysenin; toxin, pore forming toxin; HET: PC; 2.84A {Eisenia fetida} PDB: 3zxd_A* 3zxg_A*
Probab=23.57 E-value=1.7e+02 Score=26.05 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=30.0
Q ss_pred CeeEEEcCCCcEEecCCCCcc-------cCCCCCCCCeEEEEEeccCcE
Q 012451 129 NSCGYHGDDGLLYRGQGKGEA-------FGPTFTTNDTVGGGINYASQE 170 (463)
Q Consensus 129 ~S~gy~~~~G~~~~~~~~~~~-------yg~~~~~GDvIGcgid~~~~~ 170 (463)
+-|+|.+|.|.+|-+.+...+ -.-++.-||||...=++-.+.
T Consensus 220 ye~ayssdqggiyfde~sdnpkqrwal~kalplrhgdvvtf~n~~ft~s 268 (309)
T 3zx7_A 220 YEYAYSSDQGGIYFDQGTDNPKQRWAINKSLPLRHGDVVTFMNKYFTRS 268 (309)
T ss_dssp CCEEEECTTCBEEEECCCSCGGGCEEESSCSSCBTTCEECEEESSSTTE
T ss_pred ceeeeecCCCceEeccCCCChHHhhhhcccCccccCcEEEEehhhcccC
Confidence 469999999999987543322 234778999998776654443
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=22.33 E-value=3.5e+02 Score=22.79 Aligned_cols=59 Identities=12% Similarity=0.004 Sum_probs=35.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhhCCcchhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 012451 295 TLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKY 359 (463)
Q Consensus 295 ~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~ 359 (463)
.-.-.+..|++++|++.+... ++.++... ..+...-.-+.+.|+.++|+++.++-+.-.
T Consensus 179 l~~~~~~~~~~~~A~~~~~~a----l~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 179 RAAALAKLMSFPEAIADCNKA----IEKDPNFV--RAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH----HHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH----HHhCHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 345567889999999888764 33333111 112222222345688889988888765443
No 33
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.95 E-value=1.1e+02 Score=21.90 Aligned_cols=18 Identities=33% Similarity=0.199 Sum_probs=14.7
Q ss_pred cCCHHHHHHHHHhhCCcc
Q 012451 302 NGEIDAAFDKLRNWHPWI 319 (463)
Q Consensus 302 ~G~id~Al~~l~~~~p~l 319 (463)
.++++.|++||-.+.++.
T Consensus 35 ~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 35 NQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp SCCHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHhCCCCc
Confidence 478999999998886543
No 34
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=21.64 E-value=2.3e+02 Score=21.33 Aligned_cols=63 Identities=19% Similarity=0.020 Sum_probs=39.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhhCCcchhcCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCc
Q 012451 295 TLRQLIRNGEIDAAFDKLRNWHPWIVQDDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLA 363 (463)
Q Consensus 295 ~Ir~~Il~G~id~Al~~l~~~~p~ll~~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~ 363 (463)
.-.-....|++++|++.+.+- ++.++.. ..++...=.=+.+.|+.++|+++.++.+.....++
T Consensus 33 lg~~~~~~~~~~~A~~~~~~a----l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 33 LGSTFRTLGEYRKAEAVLANG----VKQFPNH--QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH----HHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHH----HHhCCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 345567889999999998763 3333311 11211222234567899999999998877664333
No 35
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=20.08 E-value=3.4e+02 Score=21.69 Aligned_cols=102 Identities=17% Similarity=-0.017 Sum_probs=55.9
Q ss_pred hhHHHHHHHHhcChHHHHHHHHHhcCCCCCCcccccccCCCcchhhhhHHHHHHHHHHHHcCCHHHHHHHHHhhCCcchh
Q 012451 242 SYGLVRSYLQHYGYEDTLNSFDLAGKTTVPPVFVAQENGFNEQDNVYALNQRKTLRQLIRNGEIDAAFDKLRNWHPWIVQ 321 (463)
Q Consensus 242 l~~LI~~yL~~~Gy~eta~af~~es~~~~~~~~~~~~~~~~e~~~~~~~~~R~~Ir~~Il~G~id~Al~~l~~~~p~ll~ 321 (463)
+..+-..|+...-|.++...|.+-... .|... ... ...=.-+...|++++|++.+..-. .+-.
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~-------------~~~--~~lg~~~~~~g~~~~A~~~~~~al-~l~p 86 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVL-DHYDS-------------RFF--LGLGACRQAMGQYDLAIHSYSYGA-VMDI 86 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCH-------------HHH--HHHHHHHHHTTCHHHHHHHHHHHH-HHST
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc-CcccH-------------HHH--HHHHHHHHHHhhHHHHHHHHHHHH-hcCC
Confidence 345555666666677777777665442 12110 011 122344578899999999887631 1111
Q ss_pred cCCCceeehhhhHHHHHHHhcCCHHHHHHHHHHHHhhhcCCcch
Q 012451 322 DDKSSTCFLLHCQKFIELVRVGALEEAVKYGRMELAKYFGLAGF 365 (463)
Q Consensus 322 ~~~s~l~F~L~~qkfIElir~~~~~eAl~~ar~~l~~~~~~~~~ 365 (463)
+++ ...|.| =.=++..|+.++|+++.++-+.-...++.+
T Consensus 87 ~~~-~~~~~l----g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 87 XEP-RFPFHA----AECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TCT-HHHHHH----HHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCc-hHHHHH----HHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 222 222222 222356789999999998766544333443
Done!