Query 012452
Match_columns 463
No_of_seqs 488 out of 2967
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:47:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00424 APS_reduc 5'-adenyly 100.0 6E-106 1E-110 828.6 43.4 459 1-463 1-463 (463)
2 PLN02309 5'-adenylylsulfate re 100.0 7E-105 1E-109 820.7 44.6 442 16-463 12-457 (457)
3 KOG0189 Phosphoadenosine phosp 100.0 8.4E-70 1.8E-74 485.9 16.6 237 80-327 15-254 (261)
4 TIGR02057 PAPS_reductase phosp 100.0 1.7E-61 3.7E-66 460.9 22.5 220 87-319 1-226 (226)
5 PRK02090 phosphoadenosine phos 100.0 9.1E-59 2E-63 447.7 23.9 229 82-323 11-240 (241)
6 TIGR00434 cysH phosophoadenyly 100.0 1.1E-56 2.3E-61 425.8 21.7 209 99-320 1-212 (212)
7 COG0175 CysH 3'-phosphoadenosi 100.0 3.2E-55 7E-60 426.4 21.3 232 84-325 12-247 (261)
8 TIGR02055 APS_reductase thiore 100.0 2.6E-54 5.6E-59 402.1 19.7 190 120-318 2-191 (191)
9 PRK12563 sulfate adenylyltrans 100.0 4.1E-43 8.9E-48 344.1 21.7 193 97-298 24-271 (312)
10 TIGR02039 CysD sulfate adenyly 100.0 1.3E-41 2.8E-46 332.7 18.5 199 97-305 6-275 (294)
11 PRK08557 hypothetical protein; 100.0 4.9E-41 1.1E-45 344.0 21.0 188 96-296 163-359 (417)
12 PRK13794 hypothetical protein; 100.0 2.4E-40 5.2E-45 346.7 20.1 201 82-295 215-424 (479)
13 PRK05253 sulfate adenylyltrans 100.0 1.1E-39 2.4E-44 321.7 21.7 199 97-305 14-282 (301)
14 PF01507 PAPS_reduct: Phosphoa 100.0 1.6E-40 3.4E-45 304.3 13.3 169 114-294 2-174 (174)
15 PRK13795 hypothetical protein; 100.0 9.5E-38 2.1E-42 337.9 20.3 201 83-295 212-420 (636)
16 PRK08576 hypothetical protein; 100.0 4.1E-33 8.9E-38 286.3 18.6 199 82-295 205-407 (438)
17 TIGR03183 DNA_S_dndC putative 100.0 1.1E-32 2.3E-37 283.5 16.3 190 102-294 4-248 (447)
18 cd01713 PAPS_reductase This do 100.0 9.5E-32 2.1E-36 244.5 17.2 167 113-287 1-173 (173)
19 PRK06850 hypothetical protein; 100.0 9.3E-32 2E-36 279.2 16.2 193 100-294 23-267 (507)
20 COG3969 Predicted phosphoadeno 99.9 1E-22 2.3E-27 196.4 11.0 204 98-307 15-265 (407)
21 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2.2E-21 4.8E-26 165.2 13.0 107 349-459 7-113 (113)
22 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 4.3E-20 9.4E-25 154.1 12.9 100 352-459 2-101 (101)
23 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 7.7E-20 1.7E-24 153.3 12.7 102 352-459 2-104 (104)
24 cd02996 PDI_a_ERp44 PDIa famil 99.8 8.2E-20 1.8E-24 154.4 12.8 102 352-459 2-108 (108)
25 cd02993 PDI_a_APS_reductase PD 99.8 1.1E-19 2.5E-24 154.0 13.0 108 352-459 2-109 (109)
26 KOG0910 Thioredoxin-like prote 99.8 1.4E-19 3E-24 157.9 10.8 104 352-462 44-147 (150)
27 cd02994 PDI_a_TMX PDIa family, 99.8 3.9E-19 8.4E-24 148.2 13.0 100 352-461 2-101 (101)
28 PF00085 Thioredoxin: Thioredo 99.8 8.1E-19 1.7E-23 145.8 13.2 102 353-461 1-102 (103)
29 cd03065 PDI_b_Calsequestrin_N 99.8 5.8E-19 1.3E-23 151.6 12.2 104 351-462 9-118 (120)
30 cd02963 TRX_DnaJ TRX domain, D 99.8 7.5E-19 1.6E-23 149.5 11.6 105 354-462 7-111 (111)
31 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.5E-18 3.2E-23 146.4 12.7 103 352-460 1-109 (109)
32 cd03001 PDI_a_P5 PDIa family, 99.8 4.9E-18 1.1E-22 141.6 13.4 102 352-459 1-102 (103)
33 COG3118 Thioredoxin domain-con 99.8 2.8E-18 6.2E-23 164.8 12.5 107 351-462 23-129 (304)
34 cd02999 PDI_a_ERp44_like PDIa 99.8 4.2E-18 9.1E-23 142.2 11.0 92 360-459 8-100 (100)
35 PTZ00443 Thioredoxin domain-co 99.8 7.9E-18 1.7E-22 159.8 14.0 107 350-461 29-137 (224)
36 cd03005 PDI_a_ERp46 PDIa famil 99.8 8.4E-18 1.8E-22 139.9 12.2 99 353-459 2-102 (102)
37 cd02956 ybbN ybbN protein fami 99.7 1.4E-17 3.1E-22 137.4 11.9 95 360-460 2-96 (96)
38 cd02954 DIM1 Dim1 family; Dim1 99.7 6.1E-18 1.3E-22 143.3 9.8 79 358-440 2-80 (114)
39 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 1.6E-17 3.5E-22 138.5 12.2 102 352-459 1-104 (104)
40 cd02948 TRX_NDPK TRX domain, T 99.7 1.4E-17 3.1E-22 139.4 12.0 98 356-462 5-102 (102)
41 PHA02278 thioredoxin-like prot 99.7 1.5E-17 3.3E-22 139.4 11.5 94 358-458 4-100 (103)
42 PRK09381 trxA thioredoxin; Pro 99.7 3.4E-17 7.3E-22 138.5 13.8 106 350-462 2-107 (109)
43 PRK10996 thioredoxin 2; Provis 99.7 6E-17 1.3E-21 143.4 14.0 103 352-462 36-138 (139)
44 cd02998 PDI_a_ERp38 PDIa famil 99.7 4.4E-17 9.4E-22 136.0 12.1 103 352-459 1-105 (105)
45 cd02997 PDI_a_PDIR PDIa family 99.7 5.2E-17 1.1E-21 135.5 12.4 101 352-459 1-104 (104)
46 cd02985 TRX_CDSP32 TRX family, 99.7 5.5E-17 1.2E-21 136.1 12.4 98 357-461 2-101 (103)
47 TIGR01126 pdi_dom protein disu 99.7 5.9E-17 1.3E-21 134.4 12.4 100 356-462 1-101 (102)
48 cd02962 TMX2 TMX2 family; comp 99.7 8.5E-17 1.8E-21 144.0 12.8 87 351-440 28-120 (152)
49 cd03007 PDI_a_ERp29_N PDIa fam 99.7 7.7E-17 1.7E-21 137.0 11.2 101 352-462 2-115 (116)
50 KOG0190 Protein disulfide isom 99.7 4.6E-17 1E-21 168.0 10.5 105 350-461 24-130 (493)
51 KOG0907 Thioredoxin [Posttrans 99.7 1.3E-16 2.8E-21 134.1 10.8 86 370-462 20-105 (106)
52 cd03000 PDI_a_TMX3 PDIa family 99.7 1.9E-16 4.2E-21 132.9 11.9 95 359-462 7-103 (104)
53 KOG0190 Protein disulfide isom 99.7 5.5E-17 1.2E-21 167.4 10.3 118 337-461 352-471 (493)
54 cd02989 Phd_like_TxnDC9 Phosdu 99.7 3.7E-16 8E-21 133.4 12.2 101 352-459 5-112 (113)
55 cd02957 Phd_like Phosducin (Ph 99.7 2.2E-16 4.7E-21 134.7 10.5 103 351-459 4-112 (113)
56 cd02965 HyaE HyaE family; HyaE 99.7 3E-16 6.4E-21 132.2 11.0 98 351-456 10-109 (111)
57 cd02992 PDI_a_QSOX PDIa family 99.7 5.7E-16 1.2E-20 132.5 12.9 103 352-457 2-110 (114)
58 PLN00410 U5 snRNP protein, DIM 99.7 5.9E-16 1.3E-20 136.2 12.8 101 357-462 10-119 (142)
59 cd02961 PDI_a_family Protein D 99.7 4.7E-16 1E-20 127.8 11.5 99 355-459 2-101 (101)
60 TIGR01068 thioredoxin thioredo 99.7 1.5E-15 3.2E-20 125.5 13.0 100 356-462 1-100 (101)
61 cd02986 DLP Dim1 family, Dim1- 99.7 1.8E-15 3.9E-20 127.4 12.6 100 358-461 2-109 (114)
62 cd02953 DsbDgamma DsbD gamma f 99.6 8.2E-16 1.8E-20 128.9 10.6 95 359-460 2-104 (104)
63 cd02984 TRX_PICOT TRX domain, 99.6 1.8E-15 4E-20 124.8 11.1 96 357-459 1-96 (97)
64 cd02950 TxlA TRX-like protein 99.6 3.4E-15 7.3E-20 132.7 12.7 98 358-462 10-109 (142)
65 cd02987 Phd_like_Phd Phosducin 99.6 6.1E-15 1.3E-19 135.5 11.7 107 351-462 62-174 (175)
66 PTZ00102 disulphide isomerase; 99.6 9.3E-15 2E-19 154.8 14.5 108 350-462 356-464 (477)
67 TIGR01130 ER_PDI_fam protein d 99.6 9.1E-15 2E-19 153.7 13.9 105 352-462 2-108 (462)
68 PTZ00051 thioredoxin; Provisio 99.6 1E-14 2.3E-19 120.5 10.7 94 353-456 2-96 (98)
69 PTZ00102 disulphide isomerase; 99.6 1.4E-14 2.9E-19 153.5 14.0 104 351-462 32-137 (477)
70 cd02949 TRX_NTR TRX domain, no 99.6 1.1E-14 2.5E-19 120.5 10.5 87 369-460 11-97 (97)
71 cd02975 PfPDO_like_N Pyrococcu 99.6 2E-14 4.3E-19 122.7 11.1 88 370-462 21-109 (113)
72 TIGR01295 PedC_BrcD bacterioci 99.5 5.1E-14 1.1E-18 121.8 12.1 101 352-460 7-121 (122)
73 cd02951 SoxW SoxW family; SoxW 99.5 7.9E-14 1.7E-18 120.9 12.1 97 360-462 5-118 (125)
74 KOG4277 Uncharacterized conser 99.5 1.4E-14 3E-19 138.1 7.4 88 370-462 42-131 (468)
75 cd02988 Phd_like_VIAF Phosduci 99.5 7.9E-14 1.7E-18 129.8 11.1 105 351-462 82-191 (192)
76 KOG0912 Thiol-disulfide isomer 99.5 3.7E-14 7.9E-19 135.7 8.6 100 356-461 1-104 (375)
77 cd01992 PP-ATPase N-terminal d 99.5 1.8E-13 4E-18 126.6 12.8 154 113-279 1-167 (185)
78 cd02947 TRX_family TRX family; 99.5 1.9E-13 4.1E-18 110.0 10.9 92 360-460 2-93 (93)
79 cd02982 PDI_b'_family Protein 99.5 2.5E-13 5.5E-18 113.2 11.1 88 370-462 11-102 (103)
80 cd02952 TRP14_like Human TRX-r 99.5 2.9E-13 6.2E-18 116.0 10.7 97 357-459 8-118 (119)
81 KOG0908 Thioredoxin-like prote 99.5 1.8E-13 3.8E-18 127.8 9.8 102 353-462 3-105 (288)
82 TIGR01130 ER_PDI_fam protein d 99.5 3.3E-13 7.1E-18 141.9 13.0 106 350-462 345-453 (462)
83 TIGR02432 lysidine_TilS_N tRNA 99.4 2.1E-12 4.5E-17 120.1 12.0 157 113-279 1-171 (189)
84 TIGR00411 redox_disulf_1 small 99.4 3.4E-12 7.4E-17 101.7 10.5 80 374-462 2-81 (82)
85 cd01993 Alpha_ANH_like_II This 99.4 1.1E-11 2.3E-16 114.6 13.5 160 113-278 1-177 (185)
86 cd02959 ERp19 Endoplasmic reti 99.3 3.8E-12 8.2E-17 109.3 8.1 70 369-440 17-89 (117)
87 TIGR02187 GlrX_arch Glutaredox 99.3 5.4E-12 1.2E-16 120.0 8.7 89 371-462 19-110 (215)
88 KOG0191 Thioredoxin/protein di 99.3 1E-11 2.2E-16 128.2 10.4 101 354-461 32-132 (383)
89 KOG0191 Thioredoxin/protein di 99.3 1.2E-11 2.6E-16 127.7 10.5 106 352-462 145-251 (383)
90 PTZ00062 glutaredoxin; Provisi 99.3 2.4E-11 5.1E-16 113.8 10.9 89 357-462 5-93 (204)
91 PRK03147 thiol-disulfide oxido 99.3 5E-11 1.1E-15 108.8 12.6 107 352-463 45-172 (173)
92 PRK00293 dipZ thiol:disulfide 99.2 4.3E-11 9.3E-16 129.2 12.6 103 357-463 459-570 (571)
93 cd02955 SSP411 TRX domain, SSP 99.2 5.2E-11 1.1E-15 103.1 9.9 100 357-462 4-118 (124)
94 PRK14018 trifunctional thiored 99.2 6.9E-11 1.5E-15 124.7 12.0 89 370-461 55-171 (521)
95 TIGR02187 GlrX_arch Glutaredox 99.2 8.6E-11 1.9E-15 111.7 10.9 96 355-461 119-214 (215)
96 TIGR00412 redox_disulf_2 small 99.2 7.8E-11 1.7E-15 93.2 8.3 74 375-459 2-75 (76)
97 PHA02125 thioredoxin-like prot 99.2 1.1E-10 2.3E-15 92.1 8.9 72 375-459 2-73 (75)
98 KOG2644 3'-phosphoadenosine 5' 99.2 1.6E-11 3.4E-16 117.7 4.7 151 113-295 84-248 (282)
99 TIGR02740 TraF-like TraF-like 99.2 1.4E-10 3.1E-15 113.8 11.2 88 370-462 165-263 (271)
100 TIGR02738 TrbB type-F conjugat 99.2 1.8E-10 3.9E-15 103.4 10.9 89 370-462 49-152 (153)
101 KOG1731 FAD-dependent sulfhydr 99.2 3.2E-11 7E-16 124.7 6.7 87 350-439 38-127 (606)
102 PRK10696 tRNA 2-thiocytidine b 99.2 4E-10 8.6E-15 110.1 14.1 160 101-276 14-198 (258)
103 TIGR00268 conserved hypothetic 99.1 1.1E-09 2.4E-14 106.6 15.0 151 101-276 3-161 (252)
104 PF13098 Thioredoxin_2: Thiore 99.1 8.1E-11 1.8E-15 99.6 6.1 87 369-459 3-112 (112)
105 cd03008 TryX_like_RdCVF Trypar 99.1 4.3E-10 9.4E-15 100.0 9.8 75 370-446 24-129 (146)
106 cd03009 TryX_like_TryX_NRX Try 99.1 5.9E-10 1.3E-14 97.2 10.0 69 370-439 17-110 (131)
107 PRK15412 thiol:disulfide inter 99.1 8.2E-10 1.8E-14 102.5 11.4 87 370-462 67-175 (185)
108 PF13905 Thioredoxin_8: Thiore 99.1 7.4E-10 1.6E-14 90.9 9.8 68 371-439 1-93 (95)
109 cd02964 TryX_like_family Trypa 99.1 5.9E-10 1.3E-14 97.6 9.6 69 370-439 16-110 (132)
110 cd02973 TRX_GRX_like Thioredox 99.1 3.6E-10 7.7E-15 86.7 7.2 57 374-434 2-58 (67)
111 cd03010 TlpA_like_DsbE TlpA-li 99.1 8.7E-10 1.9E-14 95.5 9.9 80 370-455 24-126 (127)
112 TIGR00385 dsbE periplasmic pro 99.1 1.1E-09 2.4E-14 100.5 11.0 87 370-462 62-170 (173)
113 cd01990 Alpha_ANH_like_I This 99.1 1.2E-09 2.6E-14 102.6 11.4 142 114-275 1-148 (202)
114 COG1606 ATP-utilizing enzymes 99.0 1.6E-09 3.5E-14 102.4 10.9 165 98-287 5-180 (269)
115 cd03011 TlpA_like_ScsD_MtbDsbE 99.0 1.7E-09 3.6E-14 93.0 10.0 93 355-457 7-120 (123)
116 PF01171 ATP_bind_3: PP-loop f 99.0 1.8E-09 3.9E-14 99.9 10.5 152 113-277 1-165 (182)
117 cd01995 ExsB ExsB is a transcr 99.0 1.1E-08 2.4E-13 93.3 13.8 150 113-291 1-157 (169)
118 COG0037 MesJ tRNA(Ile)-lysidin 99.0 3.2E-09 6.8E-14 105.7 10.6 156 111-275 21-188 (298)
119 cd02966 TlpA_like_family TlpA- 98.9 3.9E-09 8.5E-14 88.0 9.2 75 370-445 18-114 (116)
120 PRK13728 conjugal transfer pro 98.9 1.3E-08 2.7E-13 93.4 12.7 83 375-462 73-170 (181)
121 PLN02919 haloacid dehalogenase 98.9 4.2E-09 9E-14 121.2 11.5 89 370-462 419-535 (1057)
122 PRK11509 hydrogenase-1 operon 98.9 1.2E-08 2.6E-13 88.7 11.4 104 352-462 18-123 (132)
123 TIGR02661 MauD methylamine deh 98.9 9.4E-09 2E-13 95.7 11.1 88 370-462 73-178 (189)
124 cd01712 ThiI ThiI is required 98.9 1.7E-08 3.7E-13 92.9 12.5 146 113-274 1-157 (177)
125 cd02958 UAS UAS family; UAS is 98.9 1.8E-08 3.8E-13 85.9 11.5 100 360-462 5-110 (114)
126 cd02967 mauD Methylamine utili 98.9 7.1E-09 1.5E-13 87.8 8.9 73 370-447 20-112 (114)
127 cd03012 TlpA_like_DipZ_like Tl 98.9 8.6E-09 1.9E-13 89.4 9.2 77 370-447 22-124 (126)
128 cd03026 AhpF_NTD_C TRX-GRX-lik 98.9 1E-08 2.2E-13 83.6 8.8 76 371-456 12-87 (89)
129 COG4232 Thiol:disulfide interc 98.9 6.8E-09 1.5E-13 108.9 9.7 100 360-462 464-567 (569)
130 PRK00074 guaA GMP synthase; Re 98.9 3.5E-08 7.6E-13 105.3 15.1 167 112-284 216-390 (511)
131 PRK00919 GMP synthase subunit 98.8 8.6E-08 1.9E-12 95.4 15.8 160 112-281 22-185 (307)
132 TIGR00884 guaA_Cterm GMP synth 98.8 1.2E-07 2.6E-12 94.9 16.3 166 112-283 17-189 (311)
133 PTZ00056 glutathione peroxidas 98.8 2.3E-08 5E-13 93.9 10.5 44 370-413 38-81 (199)
134 PLN02399 phospholipid hydroper 98.8 3E-08 6.4E-13 95.2 11.2 92 370-462 98-233 (236)
135 PF08534 Redoxin: Redoxin; In 98.8 3E-08 6.5E-13 87.9 10.3 77 370-447 27-133 (146)
136 cd01997 GMP_synthase_C The C-t 98.8 9.1E-08 2E-12 94.9 14.4 166 113-284 1-175 (295)
137 PF13899 Thioredoxin_7: Thiore 98.8 1.8E-08 3.9E-13 80.7 6.8 64 370-437 16-82 (82)
138 PRK14561 hypothetical protein; 98.8 1.7E-07 3.7E-12 87.6 14.4 141 113-271 2-146 (194)
139 KOG0914 Thioredoxin-like prote 98.8 1.1E-08 2.4E-13 94.0 6.0 87 351-440 124-217 (265)
140 PRK00143 mnmA tRNA-specific 2- 98.8 1.8E-07 3.9E-12 95.2 15.5 155 113-275 2-182 (346)
141 KOG0913 Thiol-disulfide isomer 98.7 3.3E-09 7.2E-14 98.8 1.6 100 351-460 24-123 (248)
142 PLN02412 probable glutathione 98.7 8.3E-08 1.8E-12 87.6 10.7 91 370-462 28-163 (167)
143 cd02960 AGR Anterior Gradient 98.7 5.1E-08 1.1E-12 84.7 8.7 77 360-440 11-91 (130)
144 PRK14665 mnmA tRNA-specific 2- 98.7 3.7E-07 8E-12 93.1 15.0 172 112-292 6-196 (360)
145 smart00594 UAS UAS domain. 98.7 2.2E-07 4.9E-12 80.2 11.2 99 359-459 14-121 (122)
146 TIGR00420 trmU tRNA (5-methyla 98.7 3.4E-07 7.4E-12 93.3 13.9 160 113-277 2-188 (352)
147 cd01998 tRNA_Me_trans tRNA met 98.6 8.1E-07 1.8E-11 90.6 15.8 159 113-275 1-183 (349)
148 PRK10660 tilS tRNA(Ile)-lysidi 98.6 1.8E-07 4E-12 98.0 11.1 152 111-277 15-179 (436)
149 PRK08349 hypothetical protein; 98.6 2.7E-07 5.8E-12 86.6 11.1 144 113-274 2-159 (198)
150 cd01996 Alpha_ANH_like_III Thi 98.6 2.8E-07 6.1E-12 82.7 10.6 111 113-225 3-116 (154)
151 cd00553 NAD_synthase NAD+ synt 98.6 7.8E-07 1.7E-11 86.5 14.5 162 101-278 12-182 (248)
152 cd02969 PRX_like1 Peroxiredoxi 98.6 3.4E-07 7.4E-12 83.6 11.1 90 370-462 24-151 (171)
153 TIGR02540 gpx7 putative glutat 98.6 3.7E-07 8.1E-12 81.9 11.1 92 370-462 21-152 (153)
154 TIGR00364 exsB protein. This p 98.6 1.8E-06 3.9E-11 81.2 15.3 165 115-283 2-186 (201)
155 cd00340 GSH_Peroxidase Glutath 98.6 2E-07 4.4E-12 83.5 8.2 43 370-413 21-63 (152)
156 PRK13980 NAD synthetase; Provi 98.5 1.5E-06 3.3E-11 85.3 14.3 156 100-274 18-180 (265)
157 TIGR00552 nadE NAD+ synthetase 98.5 1.8E-06 4E-11 84.0 14.6 158 101-275 11-177 (250)
158 COG0526 TrxA Thiol-disulfide i 98.5 4.4E-07 9.6E-12 74.9 8.8 67 371-440 32-101 (127)
159 cd01999 Argininosuccinate_Synt 98.5 6.1E-07 1.3E-11 92.1 11.0 149 114-277 1-165 (385)
160 PF02114 Phosducin: Phosducin; 98.5 3.7E-07 8E-12 89.1 8.6 107 351-462 125-237 (265)
161 TIGR01626 ytfJ_HI0045 conserve 98.5 3.9E-07 8.4E-12 84.1 8.1 86 370-461 58-178 (184)
162 TIGR00032 argG argininosuccina 98.5 1.2E-06 2.6E-11 90.2 12.2 148 113-276 1-163 (394)
163 PLN02347 GMP synthetase 98.5 2.7E-06 5.7E-11 91.1 15.1 175 101-284 217-414 (536)
164 PRK11106 queuosine biosynthesi 98.4 4.8E-06 1E-10 79.8 14.6 178 113-293 3-202 (231)
165 TIGR02196 GlrX_YruB Glutaredox 98.4 7.7E-07 1.7E-11 68.6 7.6 69 375-460 2-74 (74)
166 TIGR00342 thiazole biosynthesi 98.4 1.6E-06 3.4E-11 89.2 12.0 144 113-273 174-328 (371)
167 PRK00509 argininosuccinate syn 98.4 1.1E-06 2.5E-11 90.2 10.6 148 112-276 3-167 (399)
168 PRK08384 thiamine biosynthesis 98.4 2E-06 4.4E-11 88.1 12.4 145 113-276 182-341 (381)
169 cd01659 TRX_superfamily Thiore 98.4 9.9E-07 2.1E-11 64.5 7.6 61 375-438 1-63 (69)
170 PLN00200 argininosuccinate syn 98.4 1.2E-06 2.7E-11 90.1 10.5 148 112-276 6-171 (404)
171 PF13728 TraF: F plasmid trans 98.4 2.8E-06 6E-11 80.7 11.3 85 370-458 119-213 (215)
172 PTZ00256 glutathione peroxidas 98.4 2.1E-06 4.5E-11 79.6 10.1 44 370-413 39-83 (183)
173 TIGR03573 WbuX N-acetyl sugar 98.4 3.9E-06 8.5E-11 85.4 12.7 110 113-224 61-173 (343)
174 COG2143 Thioredoxin-related pr 98.4 6E-06 1.3E-10 72.6 11.9 90 368-460 39-146 (182)
175 cd03017 PRX_BCP Peroxiredoxin 98.4 1.7E-06 3.7E-11 75.8 8.6 86 370-457 22-137 (140)
176 PRK13820 argininosuccinate syn 98.4 7.8E-06 1.7E-10 84.0 14.4 147 112-276 3-164 (394)
177 PRK04527 argininosuccinate syn 98.3 4.5E-06 9.8E-11 85.6 12.0 146 112-276 3-169 (400)
178 PRK01565 thiamine biosynthesis 98.3 4.6E-06 1E-10 86.5 12.3 156 113-293 178-346 (394)
179 TIGR02200 GlrX_actino Glutared 98.3 2.7E-06 5.9E-11 66.4 8.1 70 375-460 2-76 (77)
180 TIGR03137 AhpC peroxiredoxin. 98.3 3.6E-06 7.8E-11 78.3 10.3 93 370-463 30-156 (187)
181 PF00578 AhpC-TSA: AhpC/TSA fa 98.3 3.1E-06 6.7E-11 72.4 8.8 70 370-440 24-120 (124)
182 cd03015 PRX_Typ2cys Peroxiredo 98.3 5E-06 1.1E-10 76.1 10.3 92 370-462 28-156 (173)
183 KOG2501 Thioredoxin, nucleored 98.3 1.8E-06 4E-11 76.6 6.7 69 370-439 32-126 (157)
184 PRK09437 bcp thioredoxin-depen 98.3 5.7E-06 1.2E-10 74.1 9.8 88 370-459 29-149 (154)
185 PRK14664 tRNA-specific 2-thiou 98.2 1.2E-05 2.6E-10 82.0 12.8 156 112-275 6-177 (362)
186 PF01216 Calsequestrin: Calseq 98.2 1.2E-05 2.6E-10 79.4 11.5 103 351-462 34-143 (383)
187 PF06508 QueC: Queuosine biosy 98.2 5.7E-06 1.2E-10 78.3 8.8 175 113-292 1-197 (209)
188 cd03018 PRX_AhpE_like Peroxire 98.2 9.3E-06 2E-10 72.0 9.1 88 372-460 29-148 (149)
189 cd02970 PRX_like2 Peroxiredoxi 98.2 1.1E-05 2.4E-10 71.2 9.5 45 371-415 23-68 (149)
190 PRK00522 tpx lipid hydroperoxi 98.2 1.3E-05 2.7E-10 73.2 9.9 88 370-460 43-166 (167)
191 PRK10382 alkyl hydroperoxide r 98.2 1.4E-05 3.1E-10 74.2 10.3 93 370-463 30-156 (187)
192 PF13848 Thioredoxin_6: Thiore 98.1 3.6E-05 7.8E-10 70.5 12.8 104 351-461 77-184 (184)
193 PF06110 DUF953: Eukaryotic pr 98.1 1.3E-05 2.9E-10 68.5 9.0 79 359-439 6-100 (119)
194 cd01994 Alpha_ANH_like_IV This 98.1 1.5E-05 3.4E-10 74.4 9.8 124 113-268 1-133 (194)
195 PF07912 ERp29_N: ERp29, N-ter 98.1 9.8E-05 2.1E-09 62.7 13.0 104 351-461 4-117 (126)
196 TIGR02739 TraF type-F conjugat 98.1 2.6E-05 5.6E-10 75.6 10.7 86 371-460 150-245 (256)
197 PRK13190 putative peroxiredoxi 98.1 2.5E-05 5.4E-10 73.6 9.9 91 371-463 27-154 (202)
198 PF03190 Thioredox_DsbH: Prote 98.0 1.1E-05 2.4E-10 72.6 7.1 79 355-439 24-113 (163)
199 PF14595 Thioredoxin_9: Thiore 98.0 1.4E-05 3.1E-10 69.7 7.6 98 356-462 28-128 (129)
200 TIGR02180 GRX_euk Glutaredoxin 98.0 1.1E-05 2.4E-10 64.1 6.1 59 375-439 1-63 (84)
201 KOG3414 Component of the U4/U6 98.0 8.5E-05 1.8E-09 62.9 11.3 100 358-461 11-118 (142)
202 cd03014 PRX_Atyp2cys Peroxired 98.0 2.3E-05 5E-10 69.1 8.5 68 370-440 25-121 (143)
203 PRK13703 conjugal pilus assemb 98.0 4.3E-05 9.3E-10 73.7 10.8 86 371-460 143-238 (248)
204 PRK15000 peroxidase; Provision 98.0 3.9E-05 8.4E-10 72.1 9.9 93 370-463 33-162 (200)
205 KOG3425 Uncharacterized conser 98.0 3.1E-05 6.7E-10 65.1 8.1 77 359-437 13-104 (128)
206 cd02991 UAS_ETEA UAS family, E 98.0 5.6E-05 1.2E-09 64.7 9.6 99 360-462 5-112 (116)
207 PF13192 Thioredoxin_3: Thiore 98.0 6.5E-05 1.4E-09 59.2 9.2 73 377-460 4-76 (76)
208 PRK01269 tRNA s(4)U8 sulfurtra 98.0 5E-05 1.1E-09 80.8 11.2 142 113-273 179-333 (482)
209 COG2117 Predicted subunit of t 97.9 2.9E-05 6.2E-10 68.7 7.2 104 113-224 2-109 (198)
210 PTZ00137 2-Cys peroxiredoxin; 97.9 8.9E-05 1.9E-09 72.3 11.0 93 370-463 97-225 (261)
211 cd03016 PRX_1cys Peroxiredoxin 97.9 7.2E-05 1.6E-09 70.5 9.8 90 373-463 28-154 (203)
212 KOG2603 Oligosaccharyltransfer 97.9 8.5E-05 1.9E-09 72.5 10.3 110 350-462 39-165 (331)
213 PRK13599 putative peroxiredoxi 97.8 0.00011 2.4E-09 69.9 10.0 92 371-463 28-156 (215)
214 PF02540 NAD_synthase: NAD syn 97.8 3.7E-05 7.9E-10 74.4 6.5 163 101-279 7-174 (242)
215 cd02968 SCO SCO (an acronym fo 97.8 7.5E-05 1.6E-09 65.5 7.9 45 370-414 21-69 (142)
216 KOG1672 ATP binding protein [P 97.8 4.2E-05 9.1E-10 69.7 6.3 82 352-440 67-149 (211)
217 cd01986 Alpha_ANH_like Adenine 97.8 0.0001 2.2E-09 61.5 7.9 44 114-157 1-47 (103)
218 cd02971 PRX_family Peroxiredox 97.8 0.00012 2.6E-09 63.9 8.7 77 370-447 21-128 (140)
219 PTZ00323 NAD+ synthase; Provis 97.8 0.00032 6.9E-09 69.7 12.5 157 103-274 37-211 (294)
220 cd03072 PDI_b'_ERp44 PDIb' fam 97.8 0.00027 5.8E-09 60.0 10.4 100 353-462 1-107 (111)
221 PF03054 tRNA_Me_trans: tRNA m 97.8 0.00018 4E-09 73.1 11.0 156 113-274 2-186 (356)
222 PRK13191 putative peroxiredoxi 97.7 0.0002 4.2E-09 68.2 9.6 92 371-463 33-161 (215)
223 PRK13189 peroxiredoxin; Provis 97.7 0.00019 4.2E-09 68.5 9.6 93 370-463 34-163 (222)
224 PF02568 ThiI: Thiamine biosyn 97.7 0.00021 4.5E-09 66.8 9.0 142 112-273 4-161 (197)
225 PRK10606 btuE putative glutath 97.7 6.7E-05 1.5E-09 69.4 5.5 43 370-413 24-66 (183)
226 PRK11200 grxA glutaredoxin 1; 97.7 0.00013 2.9E-09 58.5 6.5 75 374-461 2-81 (85)
227 PF02966 DIM1: Mitosis protein 97.7 0.00093 2E-08 57.5 11.8 100 357-461 7-115 (133)
228 cd02976 NrdH NrdH-redoxin (Nrd 97.6 0.00022 4.8E-09 54.5 7.4 67 375-458 2-72 (73)
229 TIGR03679 arCOG00187 arCOG0018 97.6 0.00024 5.1E-09 67.7 8.8 127 115-273 1-136 (218)
230 cd02981 PDI_b_family Protein D 97.6 0.00075 1.6E-08 55.2 10.4 89 359-461 8-96 (97)
231 COG0603 Predicted PP-loop supe 97.6 0.00091 2E-08 63.1 12.1 171 113-293 4-200 (222)
232 KOG0911 Glutaredoxin-related p 97.6 7.3E-05 1.6E-09 69.9 4.4 67 370-440 16-82 (227)
233 PRK00876 nadE NAD synthetase; 97.6 0.0025 5.4E-08 64.2 15.7 71 100-170 20-95 (326)
234 PTZ00253 tryparedoxin peroxida 97.5 0.00058 1.3E-08 64.1 10.0 93 370-463 35-164 (199)
235 cd02983 P5_C P5 family, C-term 97.5 0.0027 5.8E-08 55.5 13.0 105 352-462 3-114 (130)
236 PRK10877 protein disulfide iso 97.5 0.00062 1.3E-08 65.5 9.4 81 370-462 106-230 (232)
237 cd03073 PDI_b'_ERp72_ERp57 PDI 97.5 0.0012 2.6E-08 56.1 10.0 99 354-462 2-110 (111)
238 TIGR03143 AhpF_homolog putativ 97.4 0.00067 1.5E-08 73.6 10.6 95 352-459 459-554 (555)
239 PRK15317 alkyl hydroperoxide r 97.4 0.0008 1.7E-08 72.4 11.1 96 353-460 100-195 (517)
240 COG0482 TrmU Predicted tRNA(5- 97.4 0.0042 9.1E-08 62.7 14.4 164 112-278 4-188 (356)
241 cd01991 Asn_Synthase_B_C The C 97.3 0.0012 2.5E-08 64.6 10.0 108 111-225 15-130 (269)
242 PF00462 Glutaredoxin: Glutare 97.3 0.00087 1.9E-08 49.9 6.6 52 375-434 1-55 (60)
243 PRK05370 argininosuccinate syn 97.3 0.0027 5.8E-08 65.7 12.1 151 111-276 11-184 (447)
244 TIGR02183 GRXA Glutaredoxin, G 97.2 0.00068 1.5E-08 54.7 5.9 74 375-461 2-80 (86)
245 PRK02628 nadE NAD synthetase; 97.2 0.0061 1.3E-07 67.7 14.9 144 111-272 361-522 (679)
246 KOG3170 Conserved phosducin-li 97.2 0.0023 5E-08 58.7 9.4 103 351-460 91-198 (240)
247 cd03419 GRX_GRXh_1_2_like Glut 97.2 0.0009 1.9E-08 52.8 6.1 57 375-439 2-62 (82)
248 PRK13981 NAD synthetase; Provi 97.2 0.0057 1.2E-07 66.2 14.0 157 101-272 269-433 (540)
249 PRK00768 nadE NAD synthetase; 97.1 0.0045 9.7E-08 60.6 10.7 159 101-274 27-200 (268)
250 cd03020 DsbA_DsbC_DsbG DsbA fa 97.1 0.0015 3.2E-08 61.1 7.0 77 370-459 76-197 (197)
251 TIGR03140 AhpF alkyl hydropero 97.0 0.004 8.7E-08 67.0 11.1 96 353-460 101-196 (515)
252 KOG3171 Conserved phosducin-li 97.0 0.0023 4.9E-08 59.3 7.1 106 352-462 139-250 (273)
253 PF11009 DUF2847: Protein of u 97.0 0.0052 1.1E-07 51.3 8.6 95 357-455 6-104 (105)
254 cd02066 GRX_family Glutaredoxi 96.9 0.0031 6.6E-08 47.7 6.6 55 375-439 2-59 (72)
255 PRK10329 glutaredoxin-like pro 96.9 0.0086 1.9E-07 47.7 9.1 71 375-461 3-75 (81)
256 cd03067 PDI_b_PDIR_N PDIb fami 96.9 0.0098 2.1E-07 48.8 9.1 96 358-461 9-110 (112)
257 PF00764 Arginosuc_synth: Argi 96.9 0.0022 4.7E-08 65.8 6.7 154 115-283 1-169 (388)
258 TIGR02194 GlrX_NrdH Glutaredox 96.8 0.003 6.6E-08 48.9 5.7 67 375-457 1-70 (72)
259 PF05768 DUF836: Glutaredoxin- 96.8 0.0031 6.6E-08 50.2 5.8 78 375-460 2-81 (81)
260 PF00837 T4_deiodinase: Iodoth 96.8 0.011 2.5E-07 56.3 10.3 60 350-410 81-140 (237)
261 TIGR02190 GlrX-dom Glutaredoxi 96.7 0.0048 1E-07 48.8 6.4 71 371-459 6-78 (79)
262 TIGR00290 MJ0570_dom MJ0570-re 96.7 0.0079 1.7E-07 57.3 8.9 118 113-266 2-128 (223)
263 KOG2805 tRNA (5-methylaminomet 96.7 0.041 8.8E-07 54.1 13.7 161 112-275 6-193 (377)
264 PF00733 Asn_synthase: Asparag 96.7 0.014 3.1E-07 55.9 10.6 121 100-225 3-134 (255)
265 TIGR03143 AhpF_homolog putativ 96.7 0.014 3E-07 63.5 11.6 87 371-462 366-453 (555)
266 TIGR02181 GRX_bact Glutaredoxi 96.7 0.0038 8.2E-08 49.1 5.4 55 375-439 1-58 (79)
267 PRK11657 dsbG disulfide isomer 96.6 0.011 2.3E-07 57.7 9.3 85 370-460 116-249 (251)
268 COG0519 GuaA GMP synthase, PP- 96.6 0.0092 2E-07 57.8 8.3 175 102-287 11-197 (315)
269 cd03418 GRX_GRXb_1_3_like Glut 96.6 0.0072 1.6E-07 46.8 6.3 55 375-439 2-60 (75)
270 TIGR02189 GlrX-like_plant Glut 96.5 0.0057 1.2E-07 50.8 5.8 55 375-439 10-70 (99)
271 cd03027 GRX_DEP Glutaredoxin ( 96.5 0.0092 2E-07 46.2 6.5 50 375-433 3-56 (73)
272 PHA03050 glutaredoxin; Provisi 96.5 0.0073 1.6E-07 51.0 6.1 58 375-439 15-78 (108)
273 PF13848 Thioredoxin_6: Thiore 96.4 0.027 5.8E-07 51.3 10.1 68 388-462 7-74 (184)
274 PF07449 HyaE: Hydrogenase-1 e 96.3 0.007 1.5E-07 50.8 5.0 93 350-451 8-103 (107)
275 cd02972 DsbA_family DsbA famil 96.3 0.012 2.7E-07 46.9 6.5 60 375-436 1-91 (98)
276 TIGR00365 monothiol glutaredox 96.2 0.022 4.8E-07 47.0 7.4 59 371-439 11-76 (97)
277 COG0137 ArgG Argininosuccinate 96.2 0.034 7.4E-07 56.4 9.9 144 112-278 5-171 (403)
278 COG0171 NadE NAD synthase [Coe 96.1 0.066 1.4E-06 52.4 11.5 165 100-278 13-189 (268)
279 cd01984 AANH_like Adenine nucl 96.1 0.021 4.6E-07 45.5 6.8 53 114-172 1-57 (86)
280 cd03029 GRX_hybridPRX5 Glutare 96.1 0.02 4.4E-07 44.1 6.4 67 375-459 3-71 (72)
281 TIGR01536 asn_synth_AEB aspara 96.0 0.058 1.3E-06 57.3 11.6 106 112-225 254-370 (467)
282 COG0695 GrxC Glutaredoxin and 96.0 0.024 5.1E-07 45.1 6.4 52 375-434 3-59 (80)
283 cd03028 GRX_PICOT_like Glutare 96.0 0.024 5.3E-07 46.0 6.6 59 371-439 7-72 (90)
284 COG1365 Predicted ATPase (PP-l 95.9 0.043 9.4E-07 51.2 8.4 160 89-275 25-204 (255)
285 PRK10638 glutaredoxin 3; Provi 95.7 0.034 7.5E-07 44.2 6.3 54 375-439 4-61 (83)
286 COG0301 ThiI Thiamine biosynth 95.6 0.093 2E-06 53.8 10.5 144 113-273 177-332 (383)
287 cd03069 PDI_b_ERp57 PDIb famil 95.6 0.17 3.8E-06 42.1 10.5 90 357-461 7-102 (104)
288 KOG2640 Thioredoxin [Function 95.3 0.0079 1.7E-07 59.0 1.6 88 369-462 74-161 (319)
289 cd03023 DsbA_Com1_like DsbA fa 95.3 0.037 8E-07 48.6 5.9 33 370-402 4-36 (154)
290 cd03066 PDI_b_Calsequestrin_mi 95.3 0.42 9E-06 39.6 11.7 97 354-462 3-100 (102)
291 TIGR00289 conserved hypothetic 95.1 0.053 1.1E-06 51.7 6.5 117 113-265 2-127 (222)
292 PRK10824 glutaredoxin-4; Provi 95.1 0.064 1.4E-06 45.7 6.3 67 359-439 6-79 (115)
293 COG1225 Bcp Peroxiredoxin [Pos 95.0 0.35 7.7E-06 43.5 11.0 92 370-462 29-155 (157)
294 COG2102 Predicted ATPases of P 94.2 0.17 3.6E-06 47.8 7.4 125 113-273 2-136 (223)
295 KOG1752 Glutaredoxin and relat 94.0 0.14 3.1E-06 42.8 5.8 67 360-439 6-76 (104)
296 PTZ00062 glutaredoxin; Provisi 93.8 0.19 4.1E-06 47.3 7.1 67 359-439 104-177 (204)
297 PF01902 ATP_bind_4: ATP-bindi 93.6 0.07 1.5E-06 50.8 3.7 133 113-291 2-143 (218)
298 cd03013 PRX5_like Peroxiredoxi 93.6 0.15 3.2E-06 45.9 5.6 44 371-414 29-75 (155)
299 PRK12759 bifunctional gluaredo 93.4 0.17 3.6E-06 53.0 6.5 51 375-434 4-66 (410)
300 PF13462 Thioredoxin_4: Thiore 93.3 0.26 5.6E-06 43.7 6.8 42 370-412 11-54 (162)
301 cd03019 DsbA_DsbA DsbA family, 93.1 0.15 3.3E-06 46.1 5.0 38 370-408 14-51 (178)
302 COG1331 Highly conserved prote 92.8 0.21 4.6E-06 54.3 6.3 80 354-439 29-120 (667)
303 KOG2840 Uncharacterized conser 92.0 0.19 4.2E-06 49.9 4.4 153 112-271 52-229 (347)
304 KOG1622 GMP synthase [Nucleoti 92.0 0.72 1.6E-05 47.8 8.5 71 101-171 219-293 (552)
305 COG0367 AsnB Asparagine syntha 91.4 1 2.3E-05 48.8 9.7 108 111-225 230-346 (542)
306 cd03068 PDI_b_ERp72 PDIb famil 91.1 3.5 7.5E-05 34.5 10.6 92 357-461 7-106 (107)
307 TIGR03104 trio_amidotrans aspa 90.4 2.7 5.9E-05 46.1 11.9 106 112-225 261-377 (589)
308 TIGR03108 eps_aminotran_1 exos 89.7 1.7 3.6E-05 48.1 9.6 107 112-225 259-371 (628)
309 PRK10954 periplasmic protein d 89.7 0.41 8.8E-06 45.1 4.2 40 371-411 37-79 (207)
310 cd03031 GRX_GRX_like Glutaredo 88.4 1.4 3.1E-05 39.3 6.4 52 375-434 2-66 (147)
311 PRK09431 asnB asparagine synth 88.2 2.6 5.6E-05 45.9 9.6 107 112-225 228-355 (554)
312 PLN02549 asparagine synthase ( 87.0 2.2 4.8E-05 46.6 8.2 56 112-170 226-293 (578)
313 cd03060 GST_N_Omega_like GST_N 86.6 3.5 7.6E-05 31.2 7.0 52 376-433 2-53 (71)
314 PTZ00077 asparagine synthetase 86.1 4.5 9.7E-05 44.4 10.0 107 112-225 238-363 (586)
315 COG0386 BtuE Glutathione perox 85.6 2.5 5.5E-05 37.7 6.3 76 352-432 9-94 (162)
316 KOG0573 Asparagine synthase [A 85.0 2.1 4.6E-05 44.4 6.3 74 88-164 226-317 (520)
317 cd02978 KaiB_like KaiB-like fa 84.6 3.8 8.2E-05 31.8 6.1 60 374-435 3-62 (72)
318 PLN02339 NAD+ synthase (glutam 84.2 4.4 9.6E-05 45.4 9.0 66 104-169 340-445 (700)
319 cd02974 AhpF_NTD_N Alkyl hydro 82.3 14 0.00029 30.3 9.0 75 371-462 18-93 (94)
320 PRK15317 alkyl hydroperoxide r 80.7 9.7 0.00021 41.0 9.8 77 370-462 17-93 (517)
321 cd03074 PDI_b'_Calsequestrin_C 80.1 35 0.00075 28.7 11.0 108 353-462 3-119 (120)
322 PF13417 GST_N_3: Glutathione 80.0 10 0.00023 29.0 7.3 70 377-462 1-70 (75)
323 TIGR03140 AhpF alkyl hydropero 79.1 12 0.00027 40.2 10.0 78 370-462 17-94 (515)
324 cd03040 GST_N_mPGES2 GST_N fam 79.1 16 0.00035 27.8 8.2 72 375-461 2-74 (77)
325 cd03041 GST_N_2GST_N GST_N fam 78.6 13 0.00029 28.6 7.5 71 375-461 2-75 (77)
326 KOG2507 Ubiquitin regulatory p 77.9 16 0.00034 37.9 9.4 100 360-462 7-110 (506)
327 KOG2792 Putative cytochrome C 77.8 13 0.00027 36.1 8.3 88 370-460 138-272 (280)
328 TIGR02654 circ_KaiB circadian 77.7 7.7 0.00017 31.3 5.9 64 372-437 3-66 (87)
329 PRK09301 circadian clock prote 77.7 7.7 0.00017 32.3 6.0 65 370-436 4-68 (103)
330 cd03037 GST_N_GRX2 GST_N famil 77.6 11 0.00025 28.2 6.8 68 377-460 3-70 (71)
331 cd02977 ArsC_family Arsenate R 77.4 2.9 6.2E-05 34.6 3.6 78 375-461 1-85 (105)
332 PHA03075 glutaredoxin-like pro 77.0 3.8 8.1E-05 34.7 4.0 30 372-401 2-31 (123)
333 COG0450 AhpC Peroxiredoxin [Po 72.1 28 0.00061 32.4 8.8 92 371-463 33-161 (194)
334 PF10281 Ish1: Putative stress 71.7 3.9 8.4E-05 27.4 2.4 21 258-278 3-23 (38)
335 cd03059 GST_N_SspA GST_N famil 71.5 17 0.00036 27.2 6.3 70 376-461 2-71 (73)
336 KOG1706 Argininosuccinate synt 70.0 29 0.00062 34.6 8.8 56 112-169 6-62 (412)
337 cd03051 GST_N_GTT2_like GST_N 68.8 8.3 0.00018 28.8 4.1 53 376-434 2-57 (74)
338 cd00570 GST_N_family Glutathio 68.4 19 0.00042 25.8 6.0 53 376-434 2-55 (71)
339 PF06053 DUF929: Domain of unk 68.2 14 0.00031 35.8 6.3 59 369-437 56-114 (249)
340 cd03036 ArsC_like Arsenate Red 68.0 6.9 0.00015 32.9 3.8 56 376-439 2-60 (111)
341 PRK01655 spxA transcriptional 66.1 8.8 0.00019 33.3 4.2 34 375-415 2-35 (131)
342 TIGR01617 arsC_related transcr 64.4 9.9 0.00022 32.1 4.1 33 376-415 2-34 (117)
343 PF09673 TrbC_Ftype: Type-F co 63.8 48 0.001 28.0 8.1 72 357-437 9-80 (113)
344 PF09822 ABC_transp_aux: ABC-t 63.2 1.3E+02 0.0027 29.3 12.3 74 350-428 6-88 (271)
345 COG4545 Glutaredoxin-related p 62.9 12 0.00027 29.2 3.8 55 376-439 5-74 (85)
346 PF13743 Thioredoxin_5: Thiore 59.3 17 0.00036 33.2 4.9 33 377-410 2-34 (176)
347 PF00255 GSHPx: Glutathione pe 58.9 30 0.00065 29.1 5.9 45 370-415 20-64 (108)
348 cd03035 ArsC_Yffb Arsenate Red 58.9 13 0.00028 30.9 3.8 34 375-415 1-34 (105)
349 cd03055 GST_N_Omega GST_N fami 58.4 52 0.0011 26.0 7.1 55 374-434 18-72 (89)
350 cd03032 ArsC_Spx Arsenate Redu 56.7 19 0.00041 30.3 4.5 34 375-415 2-35 (115)
351 KOG4277 Uncharacterized conser 56.6 37 0.0008 33.7 6.8 90 369-461 248-349 (468)
352 PF13462 Thioredoxin_4: Thiore 56.4 15 0.00033 32.2 4.0 37 417-461 126-162 (162)
353 KOG1651 Glutathione peroxidase 54.8 46 0.00099 30.2 6.6 60 352-414 18-77 (171)
354 PRK12559 transcriptional regul 54.7 20 0.00043 31.2 4.3 34 375-415 2-35 (131)
355 PF02630 SCO1-SenC: SCO1/SenC; 54.6 30 0.00064 31.5 5.7 45 370-414 51-98 (174)
356 PF07689 KaiB: KaiB domain; I 54.3 6.6 0.00014 31.3 1.1 54 378-433 3-56 (82)
357 COG1999 Uncharacterized protei 52.3 29 0.00062 32.7 5.3 46 370-415 66-117 (207)
358 cd03045 GST_N_Delta_Epsilon GS 52.1 18 0.00038 27.2 3.3 52 376-433 2-56 (74)
359 COG3019 Predicted metal-bindin 49.8 35 0.00076 30.0 4.9 74 372-461 25-102 (149)
360 COG3531 Predicted protein-disu 48.9 30 0.00065 32.3 4.6 42 417-461 164-207 (212)
361 PF07796 DUF1638: Protein of u 48.5 51 0.0011 29.7 6.2 42 138-179 120-162 (166)
362 COG1651 DsbG Protein-disulfide 48.1 36 0.00078 32.4 5.5 32 371-402 84-115 (244)
363 PRK06702 O-acetylhomoserine am 48.0 1.6E+02 0.0034 31.1 10.6 83 97-181 60-145 (432)
364 cd02990 UAS_FAF1 UAS family, F 47.9 1.9E+02 0.0042 25.3 11.2 90 370-461 20-131 (136)
365 COG2761 FrnE Predicted dithiol 47.4 34 0.00073 32.7 4.9 39 417-462 174-212 (225)
366 PF01323 DSBA: DSBA-like thior 45.5 33 0.00072 31.0 4.6 37 417-460 157-193 (193)
367 TIGR02826 RNR_activ_nrdG3 anae 45.2 62 0.0013 28.7 6.0 35 115-151 64-102 (147)
368 PF13743 Thioredoxin_5: Thiore 45.0 17 0.00037 33.2 2.5 36 417-454 137-173 (176)
369 PF01323 DSBA: DSBA-like thior 44.8 38 0.00083 30.6 4.9 39 374-412 1-39 (193)
370 KOG0373 Serine/threonine speci 44.4 66 0.0014 30.6 6.2 90 125-218 60-164 (306)
371 KOG1422 Intracellular Cl- chan 44.2 99 0.0021 29.2 7.3 64 382-461 20-83 (221)
372 COG0278 Glutaredoxin-related p 44.2 58 0.0013 27.1 5.1 70 359-439 6-80 (105)
373 TIGR00269 conserved hypothetic 43.6 20 0.00043 29.8 2.4 25 252-276 3-27 (104)
374 TIGR02742 TrbC_Ftype type-F co 42.9 97 0.0021 27.0 6.7 22 417-439 61-82 (130)
375 PF04592 SelP_N: Selenoprotein 42.6 41 0.00089 32.3 4.6 47 369-415 24-73 (238)
376 PRK13344 spxA transcriptional 42.3 42 0.00091 29.2 4.4 34 375-415 2-35 (132)
377 cd03023 DsbA_Com1_like DsbA fa 40.2 36 0.00078 29.2 3.8 36 417-460 119-154 (154)
378 cd03025 DsbA_FrnE_like DsbA fa 39.5 37 0.0008 30.8 3.9 28 375-402 3-30 (193)
379 cd03061 GST_N_CLIC GST_N famil 39.5 1.7E+02 0.0038 23.6 7.3 67 380-462 19-85 (91)
380 COG0626 MetC Cystathionine bet 38.1 2.5E+02 0.0054 29.3 10.0 82 97-180 62-145 (396)
381 COG0468 RecA RecA/RadA recombi 38.1 99 0.0021 30.6 6.8 60 114-175 65-125 (279)
382 PF08423 Rad51: Rad51; InterP 37.4 90 0.002 30.3 6.4 47 116-164 44-98 (256)
383 COG3634 AhpF Alkyl hydroperoxi 37.3 1.2E+02 0.0027 31.1 7.2 81 370-460 115-195 (520)
384 PF13778 DUF4174: Domain of un 36.3 2.6E+02 0.0057 23.6 9.7 86 374-462 12-111 (118)
385 PRK09028 cystathionine beta-ly 34.8 3E+02 0.0065 28.6 10.1 72 100-173 63-135 (394)
386 PF01216 Calsequestrin: Calseq 34.0 5.4E+02 0.012 26.4 11.5 100 351-462 146-246 (383)
387 TIGR01324 cysta_beta_ly_B cyst 33.6 3.5E+02 0.0075 27.8 10.3 71 100-172 52-123 (377)
388 PF10561 UPF0565: Uncharacteri 32.8 54 0.0012 32.8 3.9 54 113-169 195-271 (303)
389 KOG0912 Thiol-disulfide isomer 32.3 1.4E+02 0.0031 29.9 6.6 96 352-462 211-318 (375)
390 PRK06372 translation initiatio 31.2 3.2E+02 0.007 26.6 9.0 68 98-169 73-140 (253)
391 cd03024 DsbA_FrnE DsbA family, 31.0 66 0.0014 29.3 4.1 36 417-459 165-200 (201)
392 PF01053 Cys_Met_Meta_PP: Cys/ 30.1 4.3E+02 0.0093 27.4 10.3 81 99-181 56-138 (386)
393 KOG0571 Asparagine synthase (g 30.0 2E+02 0.0044 30.3 7.5 82 81-168 201-289 (543)
394 cd03056 GST_N_4 GST_N family, 29.3 65 0.0014 23.8 3.2 53 376-434 2-57 (73)
395 cd03146 GAT1_Peptidase_E Type 27.1 2.5E+02 0.0053 26.3 7.3 104 116-219 3-120 (212)
396 PF08806 Sep15_SelM: Sep15/Sel 27.0 65 0.0014 25.4 2.8 35 427-461 40-74 (78)
397 cd06130 DNA_pol_III_epsilon_li 26.6 1.3E+02 0.0029 26.0 5.2 48 98-145 63-112 (156)
398 KOG3425 Uncharacterized conser 26.6 1.7E+02 0.0036 25.3 5.2 43 103-145 15-74 (128)
399 PLN02673 quinolinate synthetas 26.5 1.8E+02 0.004 32.4 6.9 53 55-108 54-107 (724)
400 PF10087 DUF2325: Uncharacteri 26.3 2.5E+02 0.0055 22.5 6.4 78 100-179 12-92 (97)
401 PRK08574 cystathionine gamma-s 25.8 4.8E+02 0.01 26.8 9.8 78 100-180 55-133 (385)
402 TIGR01326 OAH_OAS_sulfhy OAH/O 25.8 6E+02 0.013 26.4 10.7 69 101-171 60-129 (418)
403 PRK07050 cystathionine beta-ly 25.3 5.4E+02 0.012 26.5 10.1 71 100-172 67-138 (394)
404 PRK08133 O-succinylhomoserine 24.9 6.6E+02 0.014 25.8 10.7 71 100-172 63-134 (390)
405 PRK08114 cystathionine beta-ly 24.8 5.7E+02 0.012 26.6 10.1 73 98-172 62-135 (395)
406 KOG0852 Alkyl hydroperoxide re 24.7 4.5E+02 0.0097 24.3 8.0 93 370-463 32-161 (196)
407 PRK08248 O-acetylhomoserine am 24.5 5.1E+02 0.011 27.1 9.9 70 100-171 66-136 (431)
408 PRK10954 periplasmic protein d 24.3 1.3E+02 0.0027 28.1 4.8 20 417-439 157-176 (207)
409 PF04134 DUF393: Protein of un 24.2 93 0.002 25.7 3.5 57 378-439 2-61 (114)
410 COG1651 DsbG Protein-disulfide 24.0 1E+02 0.0022 29.3 4.1 38 417-462 205-242 (244)
411 cd03019 DsbA_DsbA DsbA family, 23.6 1.1E+02 0.0024 27.0 4.2 20 417-439 133-152 (178)
412 COG1751 Uncharacterized conser 23.5 2.6E+02 0.0056 25.2 6.0 58 112-170 29-90 (186)
413 cd03052 GST_N_GDAP1 GST_N fami 23.0 3.3E+02 0.0072 20.4 6.2 52 376-433 2-56 (73)
414 cd03030 GRX_SH3BGR Glutaredoxi 22.9 2.7E+02 0.0058 22.5 5.8 44 375-420 2-45 (92)
415 COG1636 Uncharacterized protei 22.9 5.8E+02 0.013 23.8 8.4 87 120-209 12-106 (204)
416 PRK05967 cystathionine beta-ly 22.7 6.7E+02 0.015 26.0 10.2 74 98-173 64-138 (395)
417 COG2516 Biotin synthase-relate 22.7 52 0.0011 33.1 1.8 33 273-305 274-307 (339)
418 cd03049 GST_N_3 GST_N family, 22.4 1.8E+02 0.0039 21.5 4.5 54 376-433 2-55 (73)
419 PRK07810 O-succinylhomoserine 22.4 6.6E+02 0.014 26.0 10.1 72 99-172 71-143 (403)
420 PRK00443 nagB glucosamine-6-ph 22.3 1.4E+02 0.003 28.7 4.8 66 100-165 21-100 (261)
421 PF11287 DUF3088: Protein of u 22.2 1.4E+02 0.0029 25.4 3.9 52 382-436 23-76 (112)
422 TIGR01325 O_suc_HS_sulf O-succ 21.8 7.5E+02 0.016 25.2 10.4 70 100-171 56-126 (380)
423 PF00809 Pterin_bind: Pterin b 21.7 1.1E+02 0.0024 28.7 3.8 44 99-143 81-125 (210)
424 KOG2244 Highly conserved prote 21.6 1.1E+02 0.0025 32.9 4.1 85 348-437 92-186 (786)
425 cd06136 TREX1_2 DEDDh 3'-5' ex 21.4 3.8E+02 0.0082 24.2 7.2 66 101-166 86-157 (177)
426 cd03026 AhpF_NTD_C TRX-GRX-lik 21.1 4.3E+02 0.0092 21.0 7.0 60 128-189 5-67 (89)
427 cd03033 ArsC_15kD Arsenate Red 21.0 1.1E+02 0.0024 25.7 3.3 33 375-414 2-34 (113)
428 PF05762 VWA_CoxE: VWA domain 20.8 5.9E+02 0.013 23.9 8.7 89 79-173 92-189 (222)
429 cd03053 GST_N_Phi GST_N family 20.7 1.5E+02 0.0032 22.1 3.8 71 375-461 2-75 (76)
430 cd01399 GlcN6P_deaminase GlcN6 20.7 1.6E+02 0.0035 27.5 4.8 64 101-165 9-86 (232)
431 PF00448 SRP54: SRP54-type pro 20.3 2.9E+02 0.0064 25.5 6.3 54 115-170 6-63 (196)
No 1
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=100.00 E-value=6e-106 Score=828.56 Aligned_cols=459 Identities=81% Similarity=1.313 Sum_probs=410.9
Q ss_pred CccccccccccccCc-ccccCCcccccccccccccccccccccccc--hhhhcccCCCCCCCCCCCCccccccccccCCC
Q 012452 1 MALAVTSSNSISSSS-FALTSSSNDIKVSQIGSFRLVDRAHVASTS--LSQRRSLVRPLNAEPKRNDSVVPLAATLATPV 77 (463)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (463)
||++++|+++++++. .++..++++++++|+|+++++++.++.+.+ +++||++++|+++.+++++++.+.+++.+.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (463)
T TIGR00424 1 MALAVTSSSTAISGISLSRSGESTEAKAAQIGSFRLLDRPHTISPSVNLSRRRLSVKPLNAEPKRNESIVPSAATTVAPE 80 (463)
T ss_pred CchhhhhHHhhhhccccccccccchhhhhhccccccccccccchhhhhhhcccccccccccccccccccccchhhccCcc
Confidence 999997766555443 333347889999999999999999855444 79999999999999999999999999999987
Q ss_pred cc-ccCChhhHHHHHHHhccCCHHHHHHHHHHHcCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHH
Q 012452 78 AE-KVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFD 156 (463)
Q Consensus 78 ~~-~~~~~~~~~~l~~~l~~~~a~eil~~~~~~~~~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~ 156 (463)
.. .....+|++.||++|+.++|+++|+|+++.|++++++++|||||++||||+.+.+++++|||+|||++|||||+|++
T Consensus 81 ~~~~~~~~~~l~~l~~~l~~~~~~eil~~a~~~f~~~iavasSG~edsvLlhl~~~~~~~ipV~flDTG~lFpETy~~~d 160 (463)
T TIGR00424 81 VEEKVVEVEDFEKLAKKLENASPLEIMDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFD 160 (463)
T ss_pred cccccCCHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCEEEEeccHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHH
Confidence 55 45567899999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHccCceEEEeeeccCCcccccCCCceec
Q 012452 157 EVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQV 236 (463)
Q Consensus 157 ~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~Rr~ES~~~Ra~~~~~~~ 236 (463)
+++++||++|+++.|+....++....+|++.|+.+++++||.++|++||+|+|+++++||||+||+||+++|++++++++
T Consensus 161 ~v~~~ygl~l~~~~p~~~~~~~~~~~~G~~~~~~~~~~~CC~irKVePL~raL~~~~awitG~Rr~Qs~~tRa~~~~ve~ 240 (463)
T TIGR00424 161 AVEKQYGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPVVQV 240 (463)
T ss_pred HHHHHhCCceEEECCCcchHHHHHHhcCcccCCcCChHHHhhHHhHHHHHHHHHhCCcEEeeeccccCccccccCCcccc
Confidence 99999999999999988777787888999888888899999999999999999999999999999999548999999999
Q ss_pred CCCCcCCcCCCCCeEEEEeCccCcHHHHHHHHHhCCCCccchhccCCcccCcccCCccCCCCCCcccccccccCCCcccc
Q 012452 237 DPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKEC 316 (463)
Q Consensus 237 d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~Ct~~~~~g~~~r~GRw~~~~~~~~ec 316 (463)
|+.+++.+++.++++|+|||++||.+|||.||++|+|||||||++||.||||+|||+|+.+|+|+|+|||||++..|+||
T Consensus 241 d~~~~~~~~~~~~~iKvnPLa~Wt~~dVw~Yi~~~~LP~npL~~~GY~SIGC~pCT~pv~~ged~RaGRW~w~~~~k~EC 320 (463)
T TIGR00424 241 DPVFEGLDGGVGSLVKWNPVANVEGKDVWNFLRTMDVPVNTLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKEC 320 (463)
T ss_pred cccccccccCCCceEEEeecccCCHHHHHHHHHHcCCCCCchhhcCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccC
Confidence 98776655555679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccccccccCCCCCCCCCCcccccccCCCCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHH
Q 012452 317 GLHKGNIKQEDAAVNGNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVEL 396 (463)
Q Consensus 317 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~l 396 (463)
|||.++++..... +.........+.++|.++.|++|+.+||++++++.+.+++|||+||||||++|+.|.|.|+++
T Consensus 321 GlH~~~~~~~~~~----~~~~~~~~~~~~dl~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eel 396 (463)
T TIGR00424 321 GLHKGNIKEETLD----GAVNGNGSDAVADIFDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLEL 396 (463)
T ss_pred CCCCCCccccccc----hhhhhccccccccccCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHH
Confidence 9999877654322 333345677899999999999999999999986667899999999999999999999999999
Q ss_pred HHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHhC
Q 012452 397 ADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 463 (463)
Q Consensus 397 a~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l~ 463 (463)
++++++.++.|++||+|.+...++.++|+|.++||++||++|...++.|.+|.++.+.|..||+.|+
T Consensus 397 A~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~~ 463 (463)
T TIGR00424 397 AEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLLR 463 (463)
T ss_pred HHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhhC
Confidence 9999875699999999976234542689999999999999997668899876899999999999885
No 2
>PLN02309 5'-adenylylsulfate reductase
Probab=100.00 E-value=6.8e-105 Score=820.69 Aligned_cols=442 Identities=78% Similarity=1.298 Sum_probs=404.7
Q ss_pred ccccCCcccccccccccccccccccccccc--hhhhcc-cCCCCCCCCCCCCccccccccccCCCccccCChhhHHHHHH
Q 012452 16 FALTSSSNDIKVSQIGSFRLVDRAHVASTS--LSQRRS-LVRPLNAEPKRNDSVVPLAATLATPVAEKVEGEEDFEQFAK 92 (463)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (463)
++++.++++++++|+|+++++++.++...+ ..++|+ +++|+++.+++.+++++.+++.++|+......++|+++||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~ln~ 91 (457)
T PLN02309 12 SSRSGASSESKAKQIGSLRLLDRGGLSARAYSLSGKRSSAAKPLNAQPAARQAMIPSAATAVAEVPEEEGEVEDFEKLAK 91 (457)
T ss_pred cccccchhhhhhhhcccccccccccchhhhhhhhhhccccccccccccccccccccccccccCCccccccChhhHHHHHH
Confidence 444458889999999999999999855444 667776 89999999999999999999999998777788999999999
Q ss_pred HhccCCHHHHHHHHHHHcCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012452 93 ELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 172 (463)
Q Consensus 93 ~l~~~~a~eil~~~~~~~~~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 172 (463)
+|+.++|+++|+|+++.|++++++++|||+|++||||+.+.+++++|||+|||++|||||+|+++++++||++|+++.|+
T Consensus 92 ~l~~~~~~eil~~a~~~~~~~ia~~~SG~ed~vll~l~~~~~~~ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~~P~ 171 (457)
T PLN02309 92 ELENASPLEIMDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYMFPD 171 (457)
T ss_pred HhhcCCHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCC
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHccCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEE
Q 012452 173 AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVK 252 (463)
Q Consensus 173 ~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k 252 (463)
....+++...+|++.|+++++++||.++|++||+|+|+++++||||+||+||+++|++++++++|+.+++.+++.++++|
T Consensus 172 ~~~~~~~~~~~g~~~~~~~~~~~Cc~irKVePL~raL~~~~awitG~Rr~Qs~~~Ra~l~~ve~d~~~~~~~~~~~~~lK 251 (457)
T PLN02309 172 AVEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRAEVPVVQVDPVFEGLDGGPGSLVK 251 (457)
T ss_pred cchHHHHHHhcCccccccCChHHhhhhHhHHHHHHHHhhCCEEEEeeccccCccccccCCeeeecccccccccCCCCeeE
Confidence 88888888899998888888999999999999999999999999999999995489999999999888776666678999
Q ss_pred EEeCccCcHHHHHHHHHhCCCCccchhccCCcccCcccCCccCCCCCCcccccccccCCCcccccccccCcccccccccC
Q 012452 253 WNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNG 332 (463)
Q Consensus 253 ~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~Ct~~~~~g~~~r~GRw~~~~~~~~ecg~~~~~~~~~~~~~~~ 332 (463)
+|||+|||.+|||.||++|+|||||||++||.||||+|||+|+.+|+|+|+|||||+|..|+|||||.+|++...
T Consensus 252 vnPl~~Wt~~dVw~Yi~~~~lP~npL~~~GY~SIGC~pCT~pv~~g~~~RaGRw~w~~~~k~ECGlH~~~~~~~~----- 326 (457)
T PLN02309 252 WNPLANVTGNEVWNFLRTMDVPVNSLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKEED----- 326 (457)
T ss_pred EcccccCCHHHHHHHHHHcCCCCCcchhcCCCCCCCCCCCCCCCCCCCcccccccCCCCCcccccCCCCCccccc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876543
Q ss_pred CCCCCCCCCcccccccCCCCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEc
Q 012452 333 NGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA 412 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~ 412 (463)
++.+...+.+...+++++..|++|+.++|+++++..+.++++||+||||||++|+.|.|.|+++++.+.+.++.|++||+
T Consensus 327 ~~~~~~~~~~~~~dl~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~ 406 (457)
T PLN02309 327 NGAANDNGNAAVADIFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRA 406 (457)
T ss_pred ccccccccccccccccCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEEC
Confidence 23344556677799999999999999999999876678999999999999999999999999999999876799999999
Q ss_pred C-CCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHhC
Q 012452 413 D-GDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 463 (463)
Q Consensus 413 d-~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l~ 463 (463)
+ .+ .++++++|+|.++|||+||++|...++.|.|+.++.++|.+||++++
T Consensus 407 d~~~-~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~~ 457 (457)
T PLN02309 407 DGDQ-KEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSLR 457 (457)
T ss_pred CCcc-hHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHhC
Confidence 9 65 88883369999999999999998778999977899999999999985
No 3
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-70 Score=485.92 Aligned_cols=237 Identities=59% Similarity=0.903 Sum_probs=228.4
Q ss_pred ccCChhhHHHHHHHhccCCHHHHHHHHHHHcCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHH
Q 012452 80 KVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVE 159 (463)
Q Consensus 80 ~~~~~~~~~~l~~~l~~~~a~eil~~~~~~~~~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~ 159 (463)
....++|++.||++|++++|+|||+|++..||+.++++|||..|.++++++++.+.++++||+|||++|||||.+.+.++
T Consensus 15 ~~v~~E~~e~l~kqL~~~sP~eIm~~al~tf~~~~q~a~~G~~~lvlid~~~~~~~~~~l~~idT~~~~PeT~~l~d~Ve 94 (261)
T KOG0189|consen 15 TVVEVEDLEELNKQLENLSPQEIMDWALETFPNLFQTAASGLEGLVLIDMLSKTGRPFRLFFIDTLHHFPETLRLFDAVE 94 (261)
T ss_pred ccccHHHHHHHHHHHhhCCHHHHHHHHHHHhhhHHHHHhccccchHHHHHHHHcCCCceeEEeeccccChHHHHHHHHHH
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhC-CcEEEEcCChHHHHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHccC--ceEEEeeeccCCcccccCCCceec
Q 012452 160 KHFG-IRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQV 236 (463)
Q Consensus 160 ~~~g-l~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~--~~~itG~Rr~ES~~~Ra~~~~~~~ 236 (463)
++|| ++|++++|+..+.+..+..+|.+.||++++..||+++||+|++|+++++ .+||||+|++|| ++|+.++++++
T Consensus 95 kkY~~i~I~~~~pd~~e~ea~~~~K~~~~~~E~~~q~~~~l~KV~P~~RA~k~L~v~A~~TGrRksQ~-gtRselpiVqv 173 (261)
T KOG0189|consen 95 KKYGNIRIHVYFPDAVEVEALFASKGGFSLWEDDHQEYDRLRKVEPARRAYKGLNVKAVFTGRRKSQG-GTRSELPIVQV 173 (261)
T ss_pred HhcCceEEEEEcchhHHHHHHHHhccchhheecCchhhhhhhhccHHHHHhhccceeeEEecccccCC-CcccccceEEe
Confidence 9998 9999999999999999999999999999999999999999999999999 699999999999 69999999999
Q ss_pred CCCCcCCcCCCCCeEEEEeCccCcHHHHHHHHHhCCCCccchhccCCcccCcccCCccCCCCCCcccccccccCCCcccc
Q 012452 237 DPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKEC 316 (463)
Q Consensus 237 d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~Ct~~~~~g~~~r~GRw~~~~~~~~ec 316 (463)
|+.| +++|+|||++|+..|||.||+.+++|||.|++.||+||||+|||+||++|+|||+|||||+ +|+||
T Consensus 174 D~~f--------ellK~NPlaN~~~~dV~nyi~t~nVP~NeL~~~GY~SIG~~~~TqpV~~Ge~ERaGRW~~~--~~tEC 243 (261)
T KOG0189|consen 174 DPVF--------ELLKINPLANWEFNDVWNYIRTNNVPYNELLAAGYRSIGDEHSTQPVLEGEDERAGRWWGE--KKTEC 243 (261)
T ss_pred cCcc--------ceeeecccccccHHHHHHHHHhcCCcHHHHHhcCCeeccCccccCcCCCCcccccccccch--hchhc
Confidence 9876 5999999999999999999999999999999999999999999999999999999999998 79999
Q ss_pred cccccCccccc
Q 012452 317 GLHKGNIKQED 327 (463)
Q Consensus 317 g~~~~~~~~~~ 327 (463)
|||+||++..+
T Consensus 244 GlHkg~~s~~a 254 (261)
T KOG0189|consen 244 GLHKGNQSKFA 254 (261)
T ss_pred cccCcchhhhh
Confidence 99999988654
No 4
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=100.00 E-value=1.7e-61 Score=460.87 Aligned_cols=220 Identities=28% Similarity=0.465 Sum_probs=195.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHcC-CCeEEEEEeCCCCcHHHHHHHHHHHHHhC-
Q 012452 87 FEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTG-RPFRVFSLDTGRLNPETYRFFDEVEKHFG- 163 (463)
Q Consensus 87 ~~~l~~~l~~~~a~eil~~~~~~~~~~i~vafSGGKDS~vl-~L~~~~~-~~i~vi~~DTg~~fpeT~~~~~~~~~~~g- 163 (463)
+++||++++.++++++|+|+++.|+++++++|||||||+|| ||+.++. ++++|||+|||++||||++|+++++++|+
T Consensus 1 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~s~S~Gkds~VlL~l~~~~~~~~i~vv~vDTg~~fpET~e~~d~~~~~~~~ 80 (226)
T TIGR02057 1 LDELNEQLEKLTPQEIIAWSIVTFPHGLVQTSAFGIQALVTLHLLSSISEPMIPVIFIDTLYHFPQTLTLKDELTKKYYQ 80 (226)
T ss_pred ChhHHHhhccCCHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhCCCCCEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence 36799999999999999999999998899999999998655 9999987 89999999999999999999999999999
Q ss_pred -CcEEEEcCChHHHHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHccC--ceEEEeeeccCCcccccCCCceecCCCC
Q 012452 164 -IRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVF 240 (463)
Q Consensus 164 -l~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~--~~~itG~Rr~ES~~~Ra~~~~~~~d~~~ 240 (463)
+++..+.|... ........|.+. +..+..+||.++|++||+++++++ ++||+|+|++||. .|++++.++.|..
T Consensus 81 ~l~v~~~~~~~~-~~~~~~~~G~~~-~~~~~~~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr~es~-~Ra~~~~~~~d~~- 156 (226)
T TIGR02057 81 TLNLYKYDGCES-EADFEAKYGKLL-WQKDIEKYDYIAKVEPMQRALKELNASAWFTGRRRDQGS-ARANLPVIEIDEQ- 156 (226)
T ss_pred ceEEEEeCCchh-HHHHHHhcCCCc-cccCHHHHHHHHhhHHHHHHHHhcCCCEEEEecchhhCc-cccCCccccccCC-
Confidence 55555555433 334455667654 345678999999999999999985 4899999999996 9999999987653
Q ss_pred cCCcCCCCCeEEEEeCccCcHHHHHHHHHhCCCCccchhccCCcccCcccCCccCCCCCCcccccccccCCCccccccc
Q 012452 241 EGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLH 319 (463)
Q Consensus 241 ~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~Ct~~~~~g~~~r~GRw~~~~~~~~ecg~~ 319 (463)
++++|+|||++||..|||.||++++|||||||++||+||||++||+|+.+|+|+|+|||| +..|+|||||
T Consensus 157 -------~~~~kv~Pi~~Wt~~dVw~Yi~~~~lP~npLY~~GY~siGc~~cT~~v~~~~~~R~gRw~--~~~~~eCglh 226 (226)
T TIGR02057 157 -------NGILKVNPLIDWTFEQVYQYLDAHNVPYNPLLDQGYRSIGDYHSTRKVKEGEDERAGRWK--GKLKTECGIH 226 (226)
T ss_pred -------CCeEEEeehhhCCHHHHHHHHHHcCCCCCchhhcCCCCCCCCCcCCCCCCCCCccCccCC--CCCCCCCCCC
Confidence 479999999999999999999999999999999999999999999999999999999994 5558999999
No 5
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=100.00 E-value=9.1e-59 Score=447.66 Aligned_cols=229 Identities=45% Similarity=0.803 Sum_probs=205.0
Q ss_pred CChhhHHHHHHHhccCCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHH
Q 012452 82 EGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEK 160 (463)
Q Consensus 82 ~~~~~~~~l~~~l~~~~a~eil~~~~~~~~~~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~ 160 (463)
..+.|+.++|++++.++++++|++++++|+++++|+|||||||+|| ||+.+.+.+++++|+|||++||||++|++++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~e~i~~a~~~~~~~i~vs~SGGKDS~vlL~L~~~~~~~i~vvfiDTG~~~pet~e~~~~~~~ 90 (241)
T PRK02090 11 DLALDLAELNAELEGASAQERLAWALENFGGRLALVSSFGAEDAVLLHLVAQVDPDIPVIFLDTGYLFPETYRFIDELTE 90 (241)
T ss_pred chHHHHHHHHHHhccCCHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHH
Confidence 3477999999999999999999999999998899999999998766 999999999999999999999999999999999
Q ss_pred HhCCcEEEEcCChHHHHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHccCceEEEeeeccCCcccccCCCceecCCCC
Q 012452 161 HFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVF 240 (463)
Q Consensus 161 ~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~ 240 (463)
+||++++++.|.....+......+.+..+-.+..+||.++|+.||+++++++++|++|+|++||. .|+.+++++.++
T Consensus 91 ~~gl~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~itG~R~~es~-~R~~~~~~~~~~-- 167 (241)
T PRK02090 91 RLLLNLKVYRPDASAAEQEARYGGLWEQSVEDRDECCRIRKVEPLNRALAGLDAWITGLRREQSG-TRANLPVLEIDG-- 167 (241)
T ss_pred HhCCCEEEECCCccHHHHHHHcCCCccccccCHHHHHHHHhhHHHHHHHhcCCCeEEEechhhCc-hhccCceeeecC--
Confidence 99999999999866554444443443222256789999999999999999988899999999997 999988876652
Q ss_pred cCCcCCCCCeEEEEeCccCcHHHHHHHHHhCCCCccchhccCCcccCcccCCccCCCCCCcccccccccCCCcccccccc
Q 012452 241 EGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHK 320 (463)
Q Consensus 241 ~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~Ct~~~~~g~~~r~GRw~~~~~~~~ecg~~~ 320 (463)
+..+++||++|+++|||.|++.++|||||||++||+|+||++||.|+.+|+++|+|||| +..|+|||||.
T Consensus 168 --------~~~rv~Pi~~Wt~~dV~~Yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~~~~~~~r~gr~~--~~~~~ecg~~~ 237 (241)
T PRK02090 168 --------GRFKINPLADWTNEDVWAYLKEHDLPYHPLVDQGYPSIGCEPCTRPVEPGEDERAGRWW--GGLKKECGLHE 237 (241)
T ss_pred --------CeEEEeehhhCCHHHHHHHHHHcCCCCChHHHcCCCCcCCCCCCCCCCCCCCccccCCC--CCCCccCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999997 45599999998
Q ss_pred cCc
Q 012452 321 GNI 323 (463)
Q Consensus 321 ~~~ 323 (463)
++.
T Consensus 238 ~~~ 240 (241)
T PRK02090 238 GNL 240 (241)
T ss_pred CCC
Confidence 664
No 6
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=100.00 E-value=1.1e-56 Score=425.79 Aligned_cols=209 Identities=33% Similarity=0.572 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH
Q 012452 99 PLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ 177 (463)
Q Consensus 99 a~eil~~~~~~~~~~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~ 177 (463)
++++|++++++|+.+++++|||||||+|| ||+.++.++++|+|+|||.+||||++|+++++++||++|+++.|.... .
T Consensus 1 ~~~~l~~a~~~~~~~~~~s~SgGKDS~Vll~L~~~~~~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~~~~~~~-~ 79 (212)
T TIGR00434 1 AQEIIAWAYVTFGGHLVYSTSFGIQGAVLLDLVSKISPDIPVIFLDTGYHFPETYELIDELTERYPLNIKVYKPDLSL-A 79 (212)
T ss_pred CHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCchhH-H
Confidence 47899999999997799999999998776 999999999999999999999999999999999999999999987553 3
Q ss_pred HHHHhcCCCCCCccchhhhhhchhhhHHHHHHccCc--eEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEe
Q 012452 178 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP 255 (463)
Q Consensus 178 ~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~--~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~P 255 (463)
......|.+ ++..+.++||.++|++|++++++++. +||+|+|++||+ +|+++.+++.+.. ++.++++|
T Consensus 80 ~~~~~~g~~-~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~Es~-~R~~~~~~~~~~~--------~~~~~v~P 149 (212)
T TIGR00434 80 EQAAKYGDK-LWEQDPNKYDYLRKVEPMHRALKELHASAWFTGLRRDQGP-SRANLSILNIDEK--------FGILKVLP 149 (212)
T ss_pred HHHHhcCCC-ccccChHHHhhHHhHHHHHHHHHhcCCcEEEEecccccCc-cccCCceeeecCC--------CCcEEEee
Confidence 444556643 24557889999999999999999876 999999999997 9999888776542 36899999
Q ss_pred CccCcHHHHHHHHHhCCCCccchhccCCcccCcccCCccCCCCCCcccccccccCCCcccccccc
Q 012452 256 VANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHK 320 (463)
Q Consensus 256 I~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~Ct~~~~~g~~~r~GRw~~~~~~~~ecg~~~ 320 (463)
|+||++.|||.||++++|||||||++||+|+||++||.|+.+|+++|+||| .|..|+|||||.
T Consensus 150 I~dWt~~dVw~Yi~~~~lp~npLY~~Gy~siGc~~ct~~~~~~~~~r~gr~--~~~~~~ecg~~~ 212 (212)
T TIGR00434 150 LIDWTWKDVYQYIDAHNLPYNPLHDQGYPSIGDYHSTRPVKEGEDERAGRW--KGKAKTECGLHE 212 (212)
T ss_pred hhhCCHHHHHHHHHHcCCCCCchhhcCCCCcCCCCCCCCCCCCCCccCccC--CCCCCcCCCCCC
Confidence 999999999999999999999999999999999999999999999999998 456799999994
No 7
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.2e-55 Score=426.35 Aligned_cols=232 Identities=40% Similarity=0.719 Sum_probs=207.5
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHh
Q 012452 84 EEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 162 (463)
Q Consensus 84 ~~~~~~l~~~l~~~~a~eil~~~~~~~~~~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~ 162 (463)
...+..+++.++..+++++++|+++.|++.++++|||||||+|+ ||+.++..+++|||+|||++||||++|+++++++|
T Consensus 12 ~~~~~~~~~~le~~~~~~i~~~~~~~~~~~~~~~~S~Gkds~V~l~L~~k~~~~~~vif~DTg~~f~Et~~~~d~~~~~~ 91 (261)
T COG0175 12 SENLASLLDKLEAESPIEILRWAAEEFSNPVVVSFSGGKDSTVLLHLAAKAFPDFPVIFLDTGYHFPETYEFRDRLAEEY 91 (261)
T ss_pred hhhhHHHHHHHHhcCHHHHHHHHHHHcCCCeEEEecCchhHHHHHHHHHHhcCCCcEEEEeCCCcCHHHHHHHHHHHHHc
Confidence 45677899999999999999999999999889999999998766 99999999999999999999999999999999999
Q ss_pred CCcEEEEcCChHHHHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHccC--ceEEEeeeccCCcccccCCCceecCCCC
Q 012452 163 GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVF 240 (463)
Q Consensus 163 gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~--~~~itG~Rr~ES~~~Ra~~~~~~~d~~~ 240 (463)
|++++++.|+....+. ...+.+.+.....+|||.++|++||+++|+++ ++||+|+||+||. +|+++++++.+..+
T Consensus 92 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~-~Rak~~~~~~~~~~ 168 (261)
T COG0175 92 GLDLKVYRPDDEVAEG--EKYGGKLWEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESP-TRAKLPVVSFDSEF 168 (261)
T ss_pred CCeEEEecCccchhhh--hhcccCCCCCCcchhhhhhHhhhhHHHHHhhcCCceEEEeccccccc-ccccCceeccccCc
Confidence 9999999988765444 33333333333456899999999999999988 7999999999997 99999999988643
Q ss_pred cCCcCCCCCeEEEEeCccCcHHHHHHHHHhCCCCccchhccCCcccCcccCCccCCC-CCCcccccccccCCCccccccc
Q 012452 241 EGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLP-GQHEREGRWWWEDAKAKECGLH 319 (463)
Q Consensus 241 ~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~Ct~~~~~-g~~~r~GRw~~~~~~~~ecg~~ 319 (463)
++.++++||+|||..|||.||..++|||||||++||.||||++||+|+.+ ++++|+|||||+...++|||+|
T Consensus 169 -------~~~~rv~Pl~~Wt~~dVw~Yi~~~~lp~npLy~~Gy~siGC~~Ct~~~~~~~~~~r~~rw~~~~~~~~E~g~~ 241 (261)
T COG0175 169 -------GESIRVNPLADWTELDVWLYILANNLPYNPLYDQGYRSIGCWPCTRPVEPLAEDERAGRWEGELAEKTECGLH 241 (261)
T ss_pred -------CCeEEEcchhcCCHHHHHHHHHHhCCCCCcHHhccCCccCcccCCCcCccccccHHHHhhccccchhhhhccc
Confidence 36999999999999999999999999999999999999999999999998 9999999999987789999999
Q ss_pred ccCccc
Q 012452 320 KGNIKQ 325 (463)
Q Consensus 320 ~~~~~~ 325 (463)
..+...
T Consensus 242 ~~~~~~ 247 (261)
T COG0175 242 RADDPD 247 (261)
T ss_pred cccccc
Confidence 877643
No 8
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=100.00 E-value=2.6e-54 Score=402.13 Aligned_cols=190 Identities=51% Similarity=0.986 Sum_probs=175.5
Q ss_pred hhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCccchhhhhhc
Q 012452 120 GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRV 199 (463)
Q Consensus 120 GGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~ 199 (463)
|..|.|+|||+.++.++++|+|+|||++||||++|+++++++||++++++.|+....++.....|.+.|+.+.+++||..
T Consensus 2 ~~~s~Vll~L~~~~~~~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~cc~~ 81 (191)
T TIGR02055 2 GAEDVVLVDLAAKVRPDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSPPPLTVEEQVKEYGLNLFYRSVPHECCGI 81 (191)
T ss_pred ChHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCcccHHHHHHHcCcccccccchHHHHHH
Confidence 45556777999999999999999999999999999999999999999999887666777777889887776668999999
Q ss_pred hhhhHHHHHHccCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCccCcHHHHHHHHHhCCCCccchh
Q 012452 200 RKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLH 279 (463)
Q Consensus 200 ~Kv~Pl~r~l~~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy 279 (463)
+|++||+++++++++||+|+|++||. .|+++++++.+..+ +.++++||++||..|||+||++++|||||||
T Consensus 82 ~K~~Pl~~~l~~~~~~i~G~Rr~Es~-~R~~~~~~~~~~~~--------~~~~~~Pi~~Wt~~dVw~Yi~~~~lp~npLY 152 (191)
T TIGR02055 82 RKVEPLKRALAGVSAWITGLRRDQSP-TRAQAPFLEIDEAF--------GLVKINPLADWTSEDVWEYIADNELPYNPLH 152 (191)
T ss_pred HhHHHHHHHHhcCCEEEEEeccccCc-hhcCCceeeecCCC--------CeEEEEecccCCHHHHHHHHHHcCCCCChHH
Confidence 99999999999999999999999997 99999998887542 4899999999999999999999999999999
Q ss_pred ccCCcccCcccCCccCCCCCCcccccccccCCCcccccc
Q 012452 280 SQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGL 318 (463)
Q Consensus 280 ~~Gy~siGC~~Ct~~~~~g~~~r~GRw~~~~~~~~ecg~ 318 (463)
++||+||||++||+|+.+|+++|+|||||++..|+||||
T Consensus 153 ~~Gy~siGC~~Ct~~~~~~~~~r~gRw~~~~~~~~ecg~ 191 (191)
T TIGR02055 153 DRGYPSIGCEPCTRPVAPGEDPRAGRWWWEEAAKKECGL 191 (191)
T ss_pred HcCCCCCCCcCCCCCCCCCCCccCcCcCCCCCCCCCCCC
Confidence 999999999999999999999999999999888999997
No 9
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=100.00 E-value=4.1e-43 Score=344.09 Aligned_cols=193 Identities=22% Similarity=0.383 Sum_probs=160.1
Q ss_pred CCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHc----CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 012452 97 ASPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 171 (463)
Q Consensus 97 ~~a~eil~~~~~~~~~~i~vafSGGKDS~vl-~L~~~~----~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p 171 (463)
+.+++||++++++|++ ++++|||||||+|| ||+.++ .++++|+|+|||++||||++|+++++++||++++++.|
T Consensus 24 ~esi~ilrea~~~f~~-~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~Liv~~~ 102 (312)
T PRK12563 24 AESIHILREVVAECSK-PVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFREMIDFRDRRAKELGLDLVVHHN 102 (312)
T ss_pred HHHHHHHHHHHHhcCC-cEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEecC
Confidence 3589999999999876 78999999998766 999986 67899999999999999999999999999999999877
Q ss_pred ChHHHHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCcee-------cCCCCcC
Q 012452 172 DAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-------VDPVFEG 242 (463)
Q Consensus 172 ~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~-------~d~~~~~ 242 (463)
... +. .|... +..+..+||.++|++||+++|. ++++||+|+|++|+. .|++..+++ +|++...
T Consensus 103 ~~~-~~-----~G~~~-~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE~~-sRak~~ifs~r~~~~~wD~~~qr 174 (312)
T PRK12563 103 PDG-IA-----RGIVP-FRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEEK-SRAKERIFSFRSAFHRWDPKAQR 174 (312)
T ss_pred hHH-HH-----hCCCc-ccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHHhh-hhccCceecccccccccCccccC
Confidence 532 21 35443 3466789999999999999997 568999999999996 999998887 4543210
Q ss_pred --------CcCCCCCeEEEEeCccCcHHHHHHHHHhCCCCccchhccC--------------------------------
Q 012452 243 --------LEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG-------------------------------- 282 (463)
Q Consensus 243 --------~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~G-------------------------------- 282 (463)
.....+..+|++||++||+.|||.||+.++|||||||..+
T Consensus 175 Pelw~~~n~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~~r~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~ 254 (312)
T PRK12563 175 PELWSLYNARLRRGESLRVFPLSNWTELDVWQYIAREKIPLVPLYFAKRRPVVERDGLLIMVDDERTPLRPGETPQQRKV 254 (312)
T ss_pred hhhhhhccccccCCceEEEecchhCCHHHHHHHHHHcCCCCCcchhcCCCceEEECCeEEeccccccCCCCCCcccccee
Confidence 0011235899999999999999999999999999999864
Q ss_pred -CcccCcccCCccCCCC
Q 012452 283 -YISIGCEPCTRPVLPG 298 (463)
Q Consensus 283 -y~siGC~~Ct~~~~~g 298 (463)
|+++||++||.++...
T Consensus 255 r~Rtlg~~~~t~~v~s~ 271 (312)
T PRK12563 255 RFRTLGCYPLTGAVESD 271 (312)
T ss_pred EeeccCCccccCccCCC
Confidence 7788888888777543
No 10
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=100.00 E-value=1.3e-41 Score=332.66 Aligned_cols=199 Identities=25% Similarity=0.433 Sum_probs=166.6
Q ss_pred CCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHc----CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 012452 97 ASPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 171 (463)
Q Consensus 97 ~~a~eil~~~~~~~~~~i~vafSGGKDS~vl-~L~~~~----~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p 171 (463)
.+++++|+++++.|++ ++++|||||||+|| ||+.++ +.+++++|+|||++||||++|+++++++||++++++.+
T Consensus 6 ~esi~ilRe~~~~f~~-~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl~l~v~~~ 84 (294)
T TIGR02039 6 SEAIHIIREVAAEFER-PVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFREMIAFRDHMVAKYGLRLIVHSN 84 (294)
T ss_pred HHHHHHHHHHHHhcCC-cEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 4689999999999976 67899999998766 999887 56899999999999999999999999999999999987
Q ss_pred ChHHHHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCcee-------cCCCCc-
Q 012452 172 DAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-------VDPVFE- 241 (463)
Q Consensus 172 ~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~-------~d~~~~- 241 (463)
+.. ...|...+ ..+..+||.++|+.||++++. ++++|++|.|+||+. .|++..+++ +|+...
T Consensus 85 ~~~------~~~g~~~~-~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe~-sRake~i~s~r~~~~~wD~~~q~ 156 (294)
T TIGR02039 85 EEG------IADGINPF-TEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEEK-SRAKERIFSFRNAFHQWDPKKQR 156 (294)
T ss_pred hhh------hhcCcccc-ccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhhh-HhhcCceeeccccccccCccccC
Confidence 632 24565443 345678999999999999997 568999999999996 999877664 343311
Q ss_pred --------CCcCCCCCeEEEEeCccCcHHHHHHHHHhCCCCccchhcc--------------------------------
Q 012452 242 --------GLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQ-------------------------------- 281 (463)
Q Consensus 242 --------~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~-------------------------------- 281 (463)
+.. ..+..++++||++||+.|||.||..++|||||||.-
T Consensus 157 Pelw~~~~~~~-~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~~r~~~~r~g~~~~~~~~~~~~~~~~~~~~~~ 235 (294)
T TIGR02039 157 PELWNLYNGRI-SKGESVRVFPLSNWTELDIWRYIAAENIPIVPLYFAAKRPVVQRDGMLIMVDDVRMPLAPGEVVKERM 235 (294)
T ss_pred chhhhcccccc-ccCCcEEEechhhCCHHHHHHHHHHcCCCCCcCeecCccceeeccCeEEecCccccCCCCCCcccccc
Confidence 110 123589999999999999999999999999999953
Q ss_pred -CCcccCcccCCccCCCC---------------CCccccc
Q 012452 282 -GYISIGCEPCTRPVLPG---------------QHEREGR 305 (463)
Q Consensus 282 -Gy~siGC~~Ct~~~~~g---------------~~~r~GR 305 (463)
+|+++||+|||.++... ..||.||
T Consensus 236 ~r~rt~g~~~~t~~~~s~a~~~~~~~~e~~~~~~~er~~r 275 (294)
T TIGR02039 236 VRFRTLGCYPLTGAIESDAATVEEIIAETAAARTSERQGR 275 (294)
T ss_pred eeecccCcccCCCcccCCCCCHHHHHHHHHhccCcccccc
Confidence 89999999999999865 5678888
No 11
>PRK08557 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-41 Score=344.04 Aligned_cols=188 Identities=24% Similarity=0.394 Sum_probs=163.7
Q ss_pred cCCHHHHHHHHHHHcCC---cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 012452 96 NASPLEIMDRALEKFGN---DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 171 (463)
Q Consensus 96 ~~~a~eil~~~~~~~~~---~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p 171 (463)
..+++++|++++++|+. .++++|||||||+++ +|+.+...+++++|+|||.+||||++|+++++++||++++++.+
T Consensus 163 e~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~~~~~~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~~ 242 (417)
T PRK08557 163 EENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAKEVIPDLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDG 242 (417)
T ss_pred HHHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHHHHhCCCCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 35699999999999964 478999999999776 88888888899999999999999999999999999999998875
Q ss_pred ChHHHHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHcc---C--ceEEEeeeccCCcccccCCCceecCCCCcCCcCC
Q 012452 172 DAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG---L--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGG 246 (463)
Q Consensus 172 ~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~---~--~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~ 246 (463)
. .++..+...|.| ..+.+|||.++|+.|+++++++ . .+|++|+|++||. +|++++..+.++.
T Consensus 243 ~--~f~~~~~~~G~P---s~~~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~Rr~ES~-~Ra~~~~~~~~~~------- 309 (417)
T PRK08557 243 D--NFWENLEKEGIP---TKDNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYESF-TRANLDYERKSGF------- 309 (417)
T ss_pred h--HHHHHHhhccCC---cccchhhhHHHhHHHHHHHHHhhcCcCceEEEEeeecccch-hhccCceeccccc-------
Confidence 4 456666777754 4678999999999999999986 3 3899999999997 9999887654421
Q ss_pred CCCeEEEEeCccCcHHHHHHHHHhCCCCccchhccCCcccCcccCCccCC
Q 012452 247 VGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVL 296 (463)
Q Consensus 247 ~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~Ct~~~~ 296 (463)
.++.++++||++||..|||.||..+++||||||++||.|+||++||.+..
T Consensus 310 ~~~~~~i~PI~~Wt~~dVW~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~~ 359 (417)
T PRK08557 310 IDFQTNVFPILDWNSLDIWSYIYLNDILYNPLYDKGFERIGCYLCPSALN 359 (417)
T ss_pred ccCceeEEecccCCHHHHHHHHHHcCCCCCchhhCCCCCCCccCCCCccH
Confidence 13567999999999999999999999999999999999999999999853
No 12
>PRK13794 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-40 Score=346.68 Aligned_cols=201 Identities=27% Similarity=0.391 Sum_probs=172.9
Q ss_pred CChhhHHHHHHH-hc--cCCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHc-CCCeEEEEEeCCCCcHHHHHHHH
Q 012452 82 EGEEDFEQFAKE-LE--NASPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFD 156 (463)
Q Consensus 82 ~~~~~~~~l~~~-l~--~~~a~eil~~~~~~~~~~i~vafSGGKDS~vl-~L~~~~-~~~i~vi~~DTg~~fpeT~~~~~ 156 (463)
.+.+++-+.|.. |+ ...++++|+++++.++.+++|+|||||||+++ +|+.++ +.++.++|+|||.+||||++|++
T Consensus 215 ~~~~~~~~~n~~~l~~~~~~a~~~i~~~~~~~~~~v~vs~SGGKDS~v~L~L~~~~~~~~~~vvfiDTG~efpet~e~i~ 294 (479)
T PRK13794 215 ETWKDMVEANKNVLDKYERNSIGFIRNTAEKINKPVTVAYSGGKDSLATLLLALKALGINFPVLFNDTGLEFPETLENVE 294 (479)
T ss_pred ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecchHHHHHHHHHHHHHhCCCeEEEEEECCCCChHHHHHHH
Confidence 344555555542 22 35689999999999998899999999999875 888887 68899999999999999999999
Q ss_pred HHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHcc----CceEEEeeeccCCcccccCCC
Q 012452 157 EVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG----LRAWITGQRKDQSPGTRSEIP 232 (463)
Q Consensus 157 ~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~----~~~~itG~Rr~ES~~~Ra~~~ 232 (463)
+++++||++++++.++ .++..+...|. |..+.+|||.++|++|+++++++ ..+|++|+|++||. .|++.+
T Consensus 295 ~~~~~~gl~i~~~~~~--~f~~~~~~~G~---P~~~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~ES~-~Ra~~~ 368 (479)
T PRK13794 295 DVEKHYGLEIIRTKSE--EFWEKLEEYGP---PARDNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYESF-NRSKKP 368 (479)
T ss_pred HHHHhcCCcEEEEchH--HHHHHHHhcCC---CCCcchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCccH-hHhcCc
Confidence 9999999999998876 56666677775 45678999999999999999975 24899999999997 999998
Q ss_pred ceecCCCCcCCcCCCCCeEEEEeCccCcHHHHHHHHHhCCCCccchhccCCcccCcccCCccC
Q 012452 233 VVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV 295 (463)
Q Consensus 233 ~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~Ct~~~ 295 (463)
.++.++.. ++.++++||++||..|||.||..+++||||||++||.|+||++||...
T Consensus 369 ~~~~~~~~-------~~~~~~~PI~~Wt~~dVw~Yi~~~~lp~npLY~~G~~riGC~~Cp~~~ 424 (479)
T PRK13794 369 RIWRNPYI-------KKQILAAPILHWTAMHVWIYLFREKAPYNKLYEQGFDRIGCFMCPAME 424 (479)
T ss_pred ccccccCc-------CCcEEEechHhCCHHHHHHHHHHcCCCCChHHHCCCCCCccccCcCcC
Confidence 87765432 468899999999999999999999999999999999999999999863
No 13
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=100.00 E-value=1.1e-39 Score=321.73 Aligned_cols=199 Identities=27% Similarity=0.498 Sum_probs=164.8
Q ss_pred CCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHc----CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 012452 97 ASPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 171 (463)
Q Consensus 97 ~~a~eil~~~~~~~~~~i~vafSGGKDS~vl-~L~~~~----~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p 171 (463)
+.++++|++++++|++ ++|+|||||||+|| ||+.++ +.+++++|+|||++||||++|+++++++||++++++.+
T Consensus 14 ~esi~iLrea~~~f~~-~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~ 92 (301)
T PRK05253 14 AESIHILREVAAEFEN-PVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFPEMIEFRDRRAKELGLELIVHSN 92 (301)
T ss_pred HHHHHHHHHHHHhCCC-EEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 4589999999999964 99999999998766 999886 45799999999999999999999999999999998876
Q ss_pred ChHHHHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCcee-------cCCC---
Q 012452 172 DAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-------VDPV--- 239 (463)
Q Consensus 172 ~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~-------~d~~--- 239 (463)
+.. ...|...+ ..+..+||..+|+.||+++++ ++++|++|+|+||+. .|++..+++ +|++
T Consensus 93 ~~~------i~~g~~~~-~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~~-~Ra~e~~fs~r~~~~~wd~~~q~ 164 (301)
T PRK05253 93 PEG------IARGINPF-RHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEEK-SRAKERIFSFRDEFGQWDPKNQR 164 (301)
T ss_pred hHH------HhcCCCCC-CCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchhh-hhccCccccccccccccCccccC
Confidence 521 23454433 345679999999999999997 457999999999996 999877664 3332
Q ss_pred ------CcCCcCCCCCeEEEEeCccCcHHHHHHHHHhCCCCccchhc---------cC----------------------
Q 012452 240 ------FEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHS---------QG---------------------- 282 (463)
Q Consensus 240 ------~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~---------~G---------------------- 282 (463)
|+++. ..+..++++||++|++.|||.||+.++|||||||. .|
T Consensus 165 Pelw~~~~~~~-~~g~~~rV~PL~~Wte~DIw~Yi~~~~IP~~pLY~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 243 (301)
T PRK05253 165 PELWNLYNGRI-NKGEHIRVFPLSNWTELDIWQYIERENIPIVPLYFAHERPVVERDGMLIMVDDRMPLRPGEVVEERMV 243 (301)
T ss_pred hhhhhhccccc-cCCCeEEEeehhhCCHHHHHHHHHHcCCCCCcccccCCCceEeECCeEEecccccCCCCCCcceeeee
Confidence 11111 12458999999999999999999999999999998 45
Q ss_pred -CcccCcccCCccCCCC---------------CCccccc
Q 012452 283 -YISIGCEPCTRPVLPG---------------QHEREGR 305 (463)
Q Consensus 283 -y~siGC~~Ct~~~~~g---------------~~~r~GR 305 (463)
|+|+||++||.++... ..||.||
T Consensus 244 r~r~~g~~~~t~~~~s~a~~~~~~~~e~~~~~~~er~~r 282 (301)
T PRK05253 244 RFRTLGCYPCTGAVESEAATLEEIIAEMLVTRTSERGGR 282 (301)
T ss_pred eeeccCCccCCCcccCCCCCHHHHHHHHHhccCcccccc
Confidence 9999999999998765 4578887
No 14
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=100.00 E-value=1.6e-40 Score=304.31 Aligned_cols=169 Identities=37% Similarity=0.715 Sum_probs=127.8
Q ss_pred EEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCccc
Q 012452 114 IAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 192 (463)
Q Consensus 114 i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~ 192 (463)
++|+|||||||++| ||+.+...+++|+|+|||.+||||++|++++.++||++++++.+......... ..+. +...
T Consensus 2 i~vs~SGGKDS~v~l~l~~~~~~~~~vv~~dtg~e~p~t~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~---~~~~ 77 (174)
T PF01507_consen 2 IVVSFSGGKDSTVMLHLAREAGRKVPVVFIDTGYEFPETYEFVDELAKRYGIPIIVYRPPETFEQRFI-LYGW---PSKL 77 (174)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHTTCEEEEEE-STB-HHHHHHHHHHHHHTTCEEEEEETTSHHHHHHH-HHHH---STTH
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCcEEEEecCccCHHHHHHHHHHHhhhhhhhhhcccccchhhccc-cccc---cchh
Confidence 88999999999776 99999888899999999999999999999999999999999888876433333 2221 1222
Q ss_pred hh-hhhhchhhhHHHHHHccCc--eEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCccCcHHHHHHHHH
Q 012452 193 HQ-ECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLR 269 (463)
Q Consensus 193 ~~-~Cc~~~Kv~Pl~r~l~~~~--~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~ 269 (463)
.+ +||..+|++|++++++++. ++++|+|++||. +|+.....+.+..+ ++.++++||++|+++|||+||+
T Consensus 78 ~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~-~R~~~~~~~~~~~~-------~~~~~~~Pi~~wt~~dV~~yi~ 149 (174)
T PF01507_consen 78 WRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESP-RRAKLPMFEFDEDN-------PKIIRVYPIADWTEEDVWDYIK 149 (174)
T ss_dssp HHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTT-GCCGSSSEEEETTT-------TSEEEE-TTTT--HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchh-hhhhchhhhccccc-------CCEEEEEehhhCCHHHHHHHHH
Confidence 33 6999999999999999775 999999999997 99998887776543 3589999999999999999999
Q ss_pred hCCCCccchhccCCcccCcccCCcc
Q 012452 270 TMDVPINSLHSQGYISIGCEPCTRP 294 (463)
Q Consensus 270 ~~~lp~npLy~~Gy~siGC~~Ct~~ 294 (463)
.+++|+||||++||.|+||++||+|
T Consensus 150 ~~~l~~~~lY~~g~~r~GC~~C~~~ 174 (174)
T PF01507_consen 150 ANGLPYNPLYDKGYSRVGCWPCTRP 174 (174)
T ss_dssp HHT--B-HHHHCT-SS--BTTTB--
T ss_pred HhcCCCcHHHHCcCCCcCCccCCCC
Confidence 9999999999999999999999986
No 15
>PRK13795 hypothetical protein; Provisional
Probab=100.00 E-value=9.5e-38 Score=337.91 Aligned_cols=201 Identities=25% Similarity=0.398 Sum_probs=171.4
Q ss_pred ChhhHHHHHHH-h--ccCCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHH
Q 012452 83 GEEDFEQFAKE-L--ENASPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEV 158 (463)
Q Consensus 83 ~~~~~~~l~~~-l--~~~~a~eil~~~~~~~~~~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~ 158 (463)
+.+++-+.|.. | ....++++|++++++++.+++|+|||||||+++ ||+.++..++.++|+|||.+||||++|++++
T Consensus 212 ~~~~~~~~n~~~l~~~~~~ai~~Ir~~~~~~~~~v~Va~SGGKDS~vll~L~~~a~~~~~vvfiDTg~efpet~e~v~~~ 291 (636)
T PRK13795 212 TLEDAIEANRKHLEEKEKEAVNFIRGVAEKYNLPVSVSFSGGKDSLVVLDLAREALKDFKAFFNNTGLEFPETVENVKEV 291 (636)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 34455455532 1 235689999999999887899999999998766 9999988889999999999999999999999
Q ss_pred HHHhCCcEEEEcCChHHHHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHccC----ceEEEeeeccCCcccccCCCce
Q 012452 159 EKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL----RAWITGQRKDQSPGTRSEIPVV 234 (463)
Q Consensus 159 ~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~----~~~itG~Rr~ES~~~Ra~~~~~ 234 (463)
+++||++++++.+. ..++..+...|. |..+.+|||..+|+.|+++++++. .++++|+|++||. .|++.+.+
T Consensus 292 ~~~~gi~i~~~~~~-~~f~~~~~~~g~---P~~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ES~-~R~~~~~~ 366 (636)
T PRK13795 292 AEEYGIELIEADAG-DAFWRAVEKFGP---PARDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKYESF-SRAKSPRV 366 (636)
T ss_pred HHHcCCcEEEEccc-HhHHHhhhccCC---CccccccchhhHhHHHHHHHHHhhCCCceEEEEEEEccchH-HHhhCccc
Confidence 99999999998876 345555555554 456789999999999999999865 3899999999997 99999887
Q ss_pred ecCCCCcCCcCCCCCeEEEEeCccCcHHHHHHHHHhCCCCccchhccCCcccCcccCCccC
Q 012452 235 QVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV 295 (463)
Q Consensus 235 ~~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~Ct~~~ 295 (463)
+.++. .++.++++||++||..|||.||..+++||||||++||.|+||++||.+.
T Consensus 367 ~~~~~-------~~~~~~~~PI~~Wt~~dVw~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~ 420 (636)
T PRK13795 367 WRNPW-------VPNQIGASPIQDWTALEVWLYIFWRKLPYNPLYERGFDRIGCWLCPSSS 420 (636)
T ss_pred ccCCC-------CCCcEEEechHhCCHHHHHHHHHHhCCCCChHHHCCCCCCCccCCCCCC
Confidence 66542 2568999999999999999999999999999999999999999999974
No 16
>PRK08576 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-33 Score=286.28 Aligned_cols=199 Identities=20% Similarity=0.302 Sum_probs=153.8
Q ss_pred CChhhHHHHHHHhccCCHHHHHHHHHHHcCC-cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHH
Q 012452 82 EGEEDFEQFAKELENASPLEIMDRALEKFGN-DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVE 159 (463)
Q Consensus 82 ~~~~~~~~l~~~l~~~~a~eil~~~~~~~~~-~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~ 159 (463)
...+++-++|+.+-+. -.+.....+++++. +++|+|||||||+++ +++.+...++.++|+|||.+||+|++++++++
T Consensus 205 ~~~~~~~e~N~~~le~-~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La~k~~~~V~aV~iDTG~e~pet~e~~~~la 283 (438)
T PRK08576 205 VSLEKLIEANREVLEA-FEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLAKKAFGDVTAVYVDTGYEMPLTDEYVEKVA 283 (438)
T ss_pred CCHHHHHHHhHHHHHH-HHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHHHHhCCCCEEEEeCCCCCChHHHHHHHHHH
Confidence 3455666777765221 12223345666763 799999999999876 88888766799999999999999999999999
Q ss_pred HHhCCcEEEEcCChHHHHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHccC--ceEEEeeeccCCcccccCCCceecC
Q 012452 160 KHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVD 237 (463)
Q Consensus 160 ~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~--~~~itG~Rr~ES~~~Ra~~~~~~~d 237 (463)
++||+++++. .. .+.......|.+ ... ..||..+|+.||.++++++ ++|++|.|++||. .|+..+.+..+
T Consensus 284 e~LGI~lii~--~v-~~~~~~~~~g~p---~~~-~rcCt~lK~~pL~raake~g~~~iatG~R~dES~-~R~~~p~v~~~ 355 (438)
T PRK08576 284 EKLGVDLIRA--GV-DVPMPIEKYGMP---THS-NRWCTKLKVEALEEAIRELEDGLLVVGDRDGESA-RRRLRPPVVER 355 (438)
T ss_pred HHcCCCEEEc--cc-CHHHHhhhcCCC---Ccc-cchhhHHHHHHHHHHHHhCCCCEEEEEeeHHHhH-HhhcCCccccc
Confidence 9999998772 11 122233444432 223 3467789999999999865 5899999999996 88887655443
Q ss_pred CCCcCCcCCCCCeEEEEeCccCcHHHHHHHHHhCCCCccchhccCCcccCcccCCccC
Q 012452 238 PVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV 295 (463)
Q Consensus 238 ~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~Ct~~~ 295 (463)
.. +.++..+++||++|+..|||.|+..++||+||||++||.|+||++||...
T Consensus 356 ~~------~~~~v~rI~PL~~Wte~DV~~YI~~~gLP~npLY~~Gy~rIGC~~Cp~~~ 407 (438)
T PRK08576 356 KT------NFGKILVVMPIKFWSGAMVQLYILMNGLELNPLYYKGFYRLGCYICPSLR 407 (438)
T ss_pred cc------CCCCeEEEeChhhCCHHHHHHHHHHhCCCCCcHHhCCCCccCCcCCcchH
Confidence 21 12468999999999999999999999999999999999999999999754
No 17
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=100.00 E-value=1.1e-32 Score=283.53 Aligned_cols=190 Identities=17% Similarity=0.259 Sum_probs=145.1
Q ss_pred HHHHHHHHcCCcEEEEechhHHHHHH-HHHHHc---------CCCeEEEEEeCCCCcHHHHHHHHHHH-------HHhCC
Q 012452 102 IMDRALEKFGNDIAIAFSGAEDVALI-EYAHLT---------GRPFRVFSLDTGRLNPETYRFFDEVE-------KHFGI 164 (463)
Q Consensus 102 il~~~~~~~~~~i~vafSGGKDS~vl-~L~~~~---------~~~i~vi~~DTg~~fpeT~~~~~~~~-------~~~gl 164 (463)
-|+.++...+.+++|+|||||||+++ +|+.++ .+++.|+|.|||++||+|++|++++. +++|+
T Consensus 4 ~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~l 83 (447)
T TIGR03183 4 EIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQGL 83 (447)
T ss_pred HHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35555655566689999999998765 777664 24689999999999999999997644 55576
Q ss_pred cE--EEEcCCh-HHHHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHccC------ceEEEeeeccCCcccccCCC-ce
Q 012452 165 RI--EYMFPDA-VEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL------RAWITGQRKDQSPGTRSEIP-VV 234 (463)
Q Consensus 165 ~i--~~~~p~~-~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~------~~~itG~Rr~ES~~~Ra~~~-~~ 234 (463)
++ +++.|.. ..++..+.++|+|. |....+|||..+|+.|+++++++. .++++|+|++||. +|++.. ..
T Consensus 84 pi~~~~v~P~~~~~Fwv~liGrG~P~-P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES~-~RA~~m~k~ 161 (447)
T TIGR03183 84 PIEPHRLTPEIKDTFWVNLIGKGYPA-PRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAESQ-ARAAVMEKH 161 (447)
T ss_pred CeEEEecCCCcchHHHHHHhcCCCCC-CCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhHH-HHHhhhhhh
Confidence 66 5677875 35787778888764 567889999999999999999743 5899999999997 898862 11
Q ss_pred ecCC---CCcCCcCCCCCeEEEEeCccCcHHHHHHHHHhCCCCc-------cchhc------------------cCCccc
Q 012452 235 QVDP---VFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPI-------NSLHS------------------QGYISI 286 (463)
Q Consensus 235 ~~d~---~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~-------npLy~------------------~Gy~si 286 (463)
+... .+ ......++.+.++||.+|+.+|||.||..+++|| ..||. ||..|+
T Consensus 162 e~~~~r~~l-~~~~~~~~~~v~~PI~dWs~~DVW~yL~~~~~P~g~~~~~l~~lY~~a~~~~eCp~v~d~~~~sCG~sRf 240 (447)
T TIGR03183 162 ESGSLRDRL-SRNSSLPNSWVYSPIEDWSNDDVWMYLLQVPNPWGIDNKDLFGMYQGATADGECPLVVDTSTPSCGDSRF 240 (447)
T ss_pred ccccccccc-cccCCCCCcEEEEChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhcccCCCCceeeCCCCCCCCCCCC
Confidence 1000 01 0111235788999999999999999999999988 34442 588999
Q ss_pred CcccCCcc
Q 012452 287 GCEPCTRP 294 (463)
Q Consensus 287 GC~~Ct~~ 294 (463)
|||.||..
T Consensus 241 GCw~Ct~v 248 (447)
T TIGR03183 241 GCWVCTMV 248 (447)
T ss_pred CeeeCcCc
Confidence 99999975
No 18
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=99.98 E-value=9.5e-32 Score=244.50 Aligned_cols=167 Identities=39% Similarity=0.680 Sum_probs=137.1
Q ss_pred cEEEEechhHHHHHH-HHHHHcCC---CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGR---PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF 188 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~---~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~ 188 (463)
+++|+|||||||++| ||+.+... ++.++|+|||.+||+|++++++++++||++++++.+................+
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPAEGLALGLKGFPL 80 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHHHHHHHhhhccCC
Confidence 389999999998766 88888766 89999999999999999999999999999999988765432211111111224
Q ss_pred CccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCccCcHHHHHH
Q 012452 189 YEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWN 266 (463)
Q Consensus 189 ~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~ 266 (463)
+....++||..+|..|+.++++ +..++++|+|+|||. .|..+....... ..++..+++||++|+.+|||+
T Consensus 81 ~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~-~r~~~~~~~~~~-------~~~~~~~~~Pl~~w~~~di~~ 152 (173)
T cd01713 81 PSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESA-RRALLPVVWTDD-------GKGGILKVNPLLDWTYEDVWA 152 (173)
T ss_pred ccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccch-hhhhCccccccC-------CCCCcEEEcchhcCCHHHHHH
Confidence 5567899999999999999998 566999999999996 787765541111 224688999999999999999
Q ss_pred HHHhCCCCccchhccCCcccC
Q 012452 267 FLRTMDVPINSLHSQGYISIG 287 (463)
Q Consensus 267 yi~~~~lp~npLy~~Gy~siG 287 (463)
|++.+++|+||||++||.|+|
T Consensus 153 ~~~~~~l~~~~ly~~g~~~~g 173 (173)
T cd01713 153 YLARHGLPYNPLYDQGYRSIG 173 (173)
T ss_pred HHHHcCCCCCHHHHcCCCCCC
Confidence 999999999999999999997
No 19
>PRK06850 hypothetical protein; Provisional
Probab=99.97 E-value=9.3e-32 Score=279.22 Aligned_cols=193 Identities=20% Similarity=0.290 Sum_probs=146.4
Q ss_pred HHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHc---------CCCeEEEEEeCCCCcHHHHHHHHHHH-------HHh
Q 012452 100 LEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLT---------GRPFRVFSLDTGRLNPETYRFFDEVE-------KHF 162 (463)
Q Consensus 100 ~eil~~~~~~~~~~i~vafSGGKDS~vl-~L~~~~---------~~~i~vi~~DTg~~fpeT~~~~~~~~-------~~~ 162 (463)
++-|+..+.....+++|+|||||||+++ +|+.++ .+++.|+|.|||.+||+|++|++++. +++
T Consensus 23 i~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~ 102 (507)
T PRK06850 23 IEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENPVVVDWVNKSLERINEAAKKQ 102 (507)
T ss_pred HHHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444445689999999998765 777653 23689999999999999999988774 456
Q ss_pred CCcE--EEEcCChH-HHHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHccC------ceEEEeeeccCCcccccCC-C
Q 012452 163 GIRI--EYMFPDAV-EVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL------RAWITGQRKDQSPGTRSEI-P 232 (463)
Q Consensus 163 gl~i--~~~~p~~~-~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~------~~~itG~Rr~ES~~~Ra~~-~ 232 (463)
|++| +++.|... .|+..+.++|+|. |....||||..+|+.|+++++++. .++++|+|++||. +|++. .
T Consensus 103 glpi~~~~v~P~~~~sFwv~liGrG~P~-Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~-~RA~~m~ 180 (507)
T PRK06850 103 GLPITPHKLTPKINDTFWVNLIGKGYPA-PRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESA-ARAQVMA 180 (507)
T ss_pred CCceEEEeeCCCcchhHHHHHhcCCCCC-CCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccH-HHHhhhh
Confidence 8877 45678754 4788888888764 667899999999999999999742 4899999999997 89885 3
Q ss_pred ceecCCCCcCCcCCCCCeEEEEeCccCcHHHHHHHHHhCCCCc-------cchhc------------------cCCcccC
Q 012452 233 VVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPI-------NSLHS------------------QGYISIG 287 (463)
Q Consensus 233 ~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~-------npLy~------------------~Gy~siG 287 (463)
..+.+...-......++.+.++||.+|+.+|||.||..+++|+ +.||. ||-.|+|
T Consensus 181 ~~~~~~~rl~~~~~~~~~~v~~PI~dWs~dDVW~YL~~~~~P~g~~~~~L~~lY~~a~~~~eCp~v~d~~~~sCG~sRfG 260 (507)
T PRK06850 181 KHEIEGSRLSRHTTLPNAFVYTPIEDWSNDDVWKYLLQWENPWGGSNRDLFTLYRGASADGECPLVVDTSTPSCGNSRFG 260 (507)
T ss_pred hhcccCcceeeccCCCCcEEEeChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhccCCCCCCeeeCCCCCCCCCCCCC
Confidence 2232211111111235788999999999999999999999988 55663 5678999
Q ss_pred cccCCcc
Q 012452 288 CEPCTRP 294 (463)
Q Consensus 288 C~~Ct~~ 294 (463)
||.||..
T Consensus 261 CwvCt~v 267 (507)
T PRK06850 261 CWVCTVV 267 (507)
T ss_pred ccccccc
Confidence 9999975
No 20
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=99.88 E-value=1e-22 Score=196.40 Aligned_cols=204 Identities=21% Similarity=0.306 Sum_probs=133.4
Q ss_pred CHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHH----cCC-CeEEEEEeCCCCcHHHHHHHHHHHHHh-CC-c--EE
Q 012452 98 SPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHL----TGR-PFRVFSLDTGRLNPETYRFFDEVEKHF-GI-R--IE 167 (463)
Q Consensus 98 ~a~eil~~~~~~~~~~i~vafSGGKDS~vl-~L~~~----~~~-~i~vi~~DTg~~fpeT~~~~~~~~~~~-gl-~--i~ 167 (463)
.++++|+++++.|+. |+|+|||||||.|| ||+.+ .++ +|.|+|+|-...|..|.+|+.++...| ++ + ..
T Consensus 15 A~~eRl~~if~~f~~-VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~QYs~TidyV~em~~~~~dv~~~~yW 93 (407)
T COG3969 15 AAIERLEWIFNTFPR-VCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQYSCTIDYVQEMRESYHDVIETFYW 93 (407)
T ss_pred HHHHHHHHHHhcCCe-EEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchhhhhhHHHHHHHHHhcccCccccceE
Confidence 478999999999987 99999999998766 76654 455 699999999999999999999999975 32 2 11
Q ss_pred EEcCChH--------HHH------------------HHHHhcCCCCCCccchhhhhhchhhhHHHHHHcc---CceEEEe
Q 012452 168 YMFPDAV--------EVQ------------------ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG---LRAWITG 218 (463)
Q Consensus 168 ~~~p~~~--------~~~------------------~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~---~~~~itG 218 (463)
+.-|-.. .+| ..+.+...+.|+..++...-. +.-+.+.+.+ ..++++|
T Consensus 94 vcLPl~t~na~S~~qp~W~~Wep~~e~~WVR~~P~~~ii~d~~~F~Fyr~~M~feeF---v~~F~~Wl~~~~~~ta~LvG 170 (407)
T COG3969 94 VCLPLTTQNALSQYQPEWICWEPGTEVDWVRQPPEQVAITDPAFFPFYRYGMTFEEF---VPAFAAWLSQKRPATAVLVG 170 (407)
T ss_pred EEeehhcccchhhcCceeecCCCCCccccccCCchhccccCCCcccceeccccHHHH---HHHHHHHHhccCCceEEEEe
Confidence 2222110 000 011111222222222211111 2223333432 2589999
Q ss_pred eeccCCcccccCCC----cee-cC-CCCcCCcCCCCCeEEEEeCccCcHHHHHHHHHhCCCCccchhccCCcccCcccCC
Q 012452 219 QRKDQSPGTRSEIP----VVQ-VD-PVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCT 292 (463)
Q Consensus 219 ~Rr~ES~~~Ra~~~----~~~-~d-~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~Ct 292 (463)
+|+|||. +|-+.- ... .+ ..+..+.-..+..+.+.||+||..+|||.+..+++.+||||||+.|+- |-.+--
T Consensus 171 iRadESl-NRf~ai~~~~k~~~~~~~pWtt~~~~~~~~~~~yPiYDW~~eDiW~~~Ak~~~~yN~LYDlmYqA-Gvp~~~ 248 (407)
T COG3969 171 IRADESL-NRFNAIARKEKLRFADDKPWTTRIFPNGHVWTFYPIYDWKVEDIWTANAKFSYAYNPLYDLMYQA-GVPLRQ 248 (407)
T ss_pred ecchhhH-HHHHHHHHhhhcccCCCCCceeeecCCCceEEEEecccchHHHHHHHHHhcCCcccHHHHHHHHc-CCChhh
Confidence 9999998 885431 111 11 112222222345899999999999999999999999999999998865 544433
Q ss_pred c-cCCC-CCCccccccc
Q 012452 293 R-PVLP-GQHEREGRWW 307 (463)
Q Consensus 293 ~-~~~~-g~~~r~GRw~ 307 (463)
. -+.| |+++|.|.|-
T Consensus 249 MRVc~Pfgd~qr~gL~L 265 (407)
T COG3969 249 MRVCEPFGDEQRKGLWL 265 (407)
T ss_pred ccccCCCChhhhcccch
Confidence 3 3344 7888999874
No 21
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.86 E-value=2.2e-21 Score=165.22 Aligned_cols=107 Identities=21% Similarity=0.323 Sum_probs=95.6
Q ss_pred CCCCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCC
Q 012452 349 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS 428 (463)
Q Consensus 349 ~~~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~ 428 (463)
..++|++|++++|++++...+.++++||+||||||++|+.+.|.|+++++.+++ .+.|++|||+.+ .++|.++|+|.+
T Consensus 7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~~-~~l~~~~~~I~~ 84 (113)
T cd03006 7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWWP-QGKCRKQKHFFY 84 (113)
T ss_pred CCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCC-hHHHHHhcCCcc
Confidence 347899999999999865556899999999999999999999999999999987 699999999999 888834899999
Q ss_pred CCEEEEEeCCCcCeeecCCCCCCHHHHHHHH
Q 012452 429 FPTILFFPKHSSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 429 ~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI 459 (463)
+||+++|++|.. +..|.| .++.+.|..|+
T Consensus 85 ~PTl~lf~~g~~-~~~y~G-~~~~~~i~~~~ 113 (113)
T cd03006 85 FPVIHLYYRSRG-PIEYKG-PMRAPYMEKFV 113 (113)
T ss_pred cCEEEEEECCcc-ceEEeC-CCCHHHHHhhC
Confidence 999999998875 688887 79999998874
No 22
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.83 E-value=4.3e-20 Score=154.14 Aligned_cols=100 Identities=27% Similarity=0.634 Sum_probs=91.3
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 431 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PT 431 (463)
.|++|+.++|++.+. .+++++|+|||+||++|+.+.|.|+++++.+++ .+.|++|||+++ +++| ++|+|.++||
T Consensus 2 ~~~~l~~~~f~~~v~---~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~Pt 75 (101)
T cd03003 2 EIVTLDRGDFDAAVN---SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDD-RMLC-RSQGVNSYPS 75 (101)
T ss_pred CeEEcCHhhHHHHhc---CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCcc-HHHH-HHcCCCccCE
Confidence 588999999999886 679999999999999999999999999999987 699999999999 9999 9999999999
Q ss_pred EEEEeCCCcCeeecCCCCCCHHHHHHHH
Q 012452 432 ILFFPKHSSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 432 i~~f~~g~~~~~~y~gg~~~~~~L~~fI 459 (463)
+++|++|+. ...|.| .++.++|.+|.
T Consensus 76 ~~~~~~g~~-~~~~~G-~~~~~~l~~f~ 101 (101)
T cd03003 76 LYVFPSGMN-PEKYYG-DRSKESLVKFA 101 (101)
T ss_pred EEEEcCCCC-cccCCC-CCCHHHHHhhC
Confidence 999998875 567777 79999998873
No 23
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.83 E-value=7.7e-20 Score=153.30 Aligned_cols=102 Identities=34% Similarity=0.661 Sum_probs=91.7
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 431 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PT 431 (463)
.|.+++.++|++.+. +.+++++|+|||+||++|+.+.|.|+++++++.+ .+.|++|||+++ ++++ ++|+|.++||
T Consensus 2 ~v~~l~~~~f~~~i~--~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~-~~~~-~~~~i~~~Pt 76 (104)
T cd03004 2 SVITLTPEDFPELVL--NRKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKY-ESLC-QQANIRAYPT 76 (104)
T ss_pred cceEcCHHHHHHHHh--cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCch-HHHH-HHcCCCcccE
Confidence 578899999999875 4577999999999999999999999999999977 799999999999 9999 9999999999
Q ss_pred EEEEeCCCcCeeecCCCCCC-HHHHHHHH
Q 012452 432 ILFFPKHSSKPIKYPSERRD-VDSLMAFV 459 (463)
Q Consensus 432 i~~f~~g~~~~~~y~gg~~~-~~~L~~fI 459 (463)
+++|++|+.....|.| ..+ .++|.+||
T Consensus 77 ~~~~~~g~~~~~~~~G-~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSYNG-WHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEccC-CCCCHHHHHhhC
Confidence 9999998555788888 565 99999885
No 24
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.82 E-value=8.2e-20 Score=154.40 Aligned_cols=102 Identities=27% Similarity=0.544 Sum_probs=92.0
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC-----CCeEEEEEEcCCCcHHHHHHcCCC
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-----NGVKVGKFRADGDQKEYAKQKLQL 426 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~-----~~v~f~~VD~d~~~~~l~~~~~~I 426 (463)
+|.++++++|++.+. .++++||.||||||++|+.+.|.|+++++.+++ ..+.|++|||+.+ .+++ ++|+|
T Consensus 2 ~v~~l~~~~f~~~i~---~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~-~~~~v 76 (108)
T cd02996 2 EIVSLTSGNIDDILQ---SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIA-DRYRI 76 (108)
T ss_pred ceEEcCHhhHHHHHh---cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHH-HhCCC
Confidence 688999999999876 788999999999999999999999999988753 1589999999999 9999 99999
Q ss_pred CCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHH
Q 012452 427 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 427 ~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI 459 (463)
+++||+++|++|+.....|.| .++.++|.+||
T Consensus 77 ~~~Ptl~~~~~g~~~~~~~~g-~~~~~~l~~fi 108 (108)
T cd02996 77 NKYPTLKLFRNGMMMKREYRG-QRSVEALAEFV 108 (108)
T ss_pred CcCCEEEEEeCCcCcceecCC-CCCHHHHHhhC
Confidence 999999999999854678887 79999999986
No 25
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.82 E-value=1.1e-19 Score=153.98 Aligned_cols=108 Identities=68% Similarity=1.119 Sum_probs=95.1
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 431 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PT 431 (463)
.|++++.++|+.++...++++++||.||++||++|+.+.|.|+++++.+++.++.|+.||++.++..++++.|+|+++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 68899999999998655678999999999999999999999999999998756999999999833778833599999999
Q ss_pred EEEEeCCCcCeeecCCCCCCHHHHHHHH
Q 012452 432 ILFFPKHSSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 432 i~~f~~g~~~~~~y~gg~~~~~~L~~fI 459 (463)
+++|++|......|.|+.++.++|++||
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999988766889998558999999986
No 26
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.4e-19 Score=157.94 Aligned_cols=104 Identities=20% Similarity=0.362 Sum_probs=93.5
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 431 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PT 431 (463)
.+..++..+|++.+. +++.||||+|||+||+||+.+.|.+++++.+|.+ .++|++||+|++ .+++ .+|+|..+||
T Consensus 44 ~~~~~s~~~~~~~Vi--~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~~-~ela-~~Y~I~avPt 118 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVI--NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDEH-PELA-EDYEISAVPT 118 (150)
T ss_pred cccccCHHHHHHHHH--ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC-eEEEEEEccccc-cchH-hhcceeeeeE
Confidence 466678889998664 7899999999999999999999999999999988 899999999999 9999 9999999999
Q ss_pred EEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 432 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 432 i~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
+++|++|.+ ...+.| ..+.+.|.++|+++
T Consensus 119 vlvfknGe~-~d~~vG-~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 119 VLVFKNGEK-VDRFVG-AVPKEQLRSLIKKF 147 (150)
T ss_pred EEEEECCEE-eeeecc-cCCHHHHHHHHHHH
Confidence 999999995 335554 79999999999875
No 27
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.81 E-value=3.9e-19 Score=148.22 Aligned_cols=100 Identities=26% Similarity=0.557 Sum_probs=89.7
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 431 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PT 431 (463)
+|++|+.++|+++++ +. +||+|||+||++|+.+.|.|+++++.+++.++.|++||++++ +.++ ++|+|.++||
T Consensus 2 ~v~~l~~~~f~~~~~----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-~~~~-~~~~i~~~Pt 74 (101)
T cd02994 2 NVVELTDSNWTLVLE----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-PGLS-GRFFVTALPT 74 (101)
T ss_pred ceEEcChhhHHHHhC----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-HhHH-HHcCCcccCE
Confidence 688999999999764 33 899999999999999999999999988765699999999998 9999 9999999999
Q ss_pred EEEEeCCCcCeeecCCCCCCHHHHHHHHHH
Q 012452 432 ILFFPKHSSKPIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 432 i~~f~~g~~~~~~y~gg~~~~~~L~~fI~~ 461 (463)
+++|++|+ ...|.| .++.++|.+||++
T Consensus 75 ~~~~~~g~--~~~~~G-~~~~~~l~~~i~~ 101 (101)
T cd02994 75 IYHAKDGV--FRRYQG-PRDKEDLISFIEE 101 (101)
T ss_pred EEEeCCCC--EEEecC-CCCHHHHHHHHhC
Confidence 99999887 567877 7999999999974
No 28
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.80 E-value=8.1e-19 Score=145.84 Aligned_cols=102 Identities=30% Similarity=0.618 Sum_probs=93.9
Q ss_pred eeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEE
Q 012452 353 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432 (463)
Q Consensus 353 V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi 432 (463)
|..+|.++|++.+. +.++++||+||++||++|+.+.|.|+++++.+.+ ++.|+.||++++ ++++ ++|+|.++||+
T Consensus 1 v~~lt~~~f~~~i~--~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~-~~l~-~~~~v~~~Pt~ 75 (103)
T PF00085_consen 1 VIVLTDENFEKFIN--ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN-KELC-KKYGVKSVPTI 75 (103)
T ss_dssp SEEESTTTHHHHHT--TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS-HHHH-HHTTCSSSSEE
T ss_pred CEECCHHHHHHHHH--ccCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc-chhh-hccCCCCCCEE
Confidence 57899999999987 2489999999999999999999999999999997 799999999999 9999 99999999999
Q ss_pred EEEeCCCcCeeecCCCCCCHHHHHHHHHH
Q 012452 433 LFFPKHSSKPIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 433 ~~f~~g~~~~~~y~gg~~~~~~L~~fI~~ 461 (463)
++|++|+. ...|.| .++.++|.+||++
T Consensus 76 ~~~~~g~~-~~~~~g-~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 76 IFFKNGKE-VKRYNG-PRNAESLIEFIEK 102 (103)
T ss_dssp EEEETTEE-EEEEES-SSSHHHHHHHHHH
T ss_pred EEEECCcE-EEEEEC-CCCHHHHHHHHHc
Confidence 99999995 447777 6999999999986
No 29
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.80 E-value=5.8e-19 Score=151.56 Aligned_cols=104 Identities=22% Similarity=0.295 Sum_probs=93.8
Q ss_pred CCeeecChhhHHHHHhhcCCCCcEEEEEecCCChh--HH--HhHHHHHHHHHHh--cCCCeEEEEEEcCCCcHHHHHHcC
Q 012452 351 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQF--CQ--AMEGSYVELADKL--AGNGVKVGKFRADGDQKEYAKQKL 424 (463)
Q Consensus 351 ~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~--C~--~~~p~l~~la~~~--~~~~v~f~~VD~d~~~~~l~~~~~ 424 (463)
..|..||++||++.+. +.+.++|++||++||++ |+ .+.|.+++++.++ .+ ++.|++||+|++ ++++ ++|
T Consensus 9 ~~v~~lt~~nF~~~v~--~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~-~~La-~~~ 83 (120)
T cd03065 9 DRVIDLNEKNYKQVLK--KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKD-AKVA-KKL 83 (120)
T ss_pred cceeeCChhhHHHHHH--hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCC-HHHH-HHc
Confidence 5899999999999876 45678999999999987 99 8899999999998 66 799999999999 9999 999
Q ss_pred CCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 425 QLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 425 ~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
+|.++||+++|++|+ .+.|.| .++.+.|.+||+++
T Consensus 84 ~I~~iPTl~lfk~G~--~v~~~G-~~~~~~l~~~l~~~ 118 (120)
T cd03065 84 GLDEEDSIYVFKDDE--VIEYDG-EFAADTLVEFLLDL 118 (120)
T ss_pred CCccccEEEEEECCE--EEEeeC-CCCHHHHHHHHHHH
Confidence 999999999999998 566877 79999999999876
No 30
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.79 E-value=7.5e-19 Score=149.54 Aligned_cols=105 Identities=23% Similarity=0.355 Sum_probs=89.6
Q ss_pred eecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEE
Q 012452 354 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 433 (463)
Q Consensus 354 ~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~ 433 (463)
..++.++|++.+...+.++++||+||||||++|+.+.|.|+++++++.+.++.|++||++.+ +.++ ++|+|.++||++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-~~l~-~~~~V~~~Pt~~ 84 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-RRLA-RKLGAHSVPAIV 84 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-HHHH-HHcCCccCCEEE
Confidence 34577888765532346899999999999999999999999999999864699999999999 9999 999999999999
Q ss_pred EEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 434 FFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 434 ~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
+|++|+ ...+..|..+.+.|.+||++|
T Consensus 85 i~~~g~--~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 85 GIINGQ--VTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred EEECCE--EEEEecCCCCHHHHHHHHhcC
Confidence 999887 444443478999999999875
No 31
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.79 E-value=1.5e-18 Score=146.44 Aligned_cols=103 Identities=25% Similarity=0.497 Sum_probs=92.2
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCC--CcHHHHHHcCCCCCC
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG--DQKEYAKQKLQLGSF 429 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~--~~~~l~~~~~~I~~~ 429 (463)
.|++|++++|++.+. +.++++||+|||+||++|+.+.|.|+++++.+.+ .+.|+.+|++. + .+++ ++|+|.++
T Consensus 1 ~v~~l~~~~~~~~i~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~-~~~~-~~~~i~~~ 75 (109)
T cd03002 1 PVYELTPKNFDKVVH--NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKN-KPLC-GKYGVQGF 75 (109)
T ss_pred CeEEcchhhHHHHHh--cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcccc-HHHH-HHcCCCcC
Confidence 378899999999886 4578899999999999999999999999999987 79999999998 6 8999 89999999
Q ss_pred CEEEEEeCCC----cCeeecCCCCCCHHHHHHHHH
Q 012452 430 PTILFFPKHS----SKPIKYPSERRDVDSLMAFVD 460 (463)
Q Consensus 430 PTi~~f~~g~----~~~~~y~gg~~~~~~L~~fI~ 460 (463)
||+++|++|+ .....|.| .++.++|.+||.
T Consensus 76 Pt~~~~~~~~~~~~~~~~~~~G-~~~~~~l~~fi~ 109 (109)
T cd03002 76 PTLKVFRPPKKASKHAVEDYNG-ERSAKAIVDFVL 109 (109)
T ss_pred CEEEEEeCCCcccccccccccC-ccCHHHHHHHhC
Confidence 9999999986 23678887 799999999983
No 32
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.77 E-value=4.9e-18 Score=141.60 Aligned_cols=102 Identities=29% Similarity=0.593 Sum_probs=92.2
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 431 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PT 431 (463)
.|.++++++|++.+. +.+++++|+||++||++|+.+.|.|.++++++.+ .+.|+.+|++++ .+++ ++|+|.++||
T Consensus 1 ~v~~l~~~~~~~~i~--~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~-~~~~-~~~~i~~~P~ 75 (103)
T cd03001 1 DVVELTDSNFDKKVL--NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVH-QSLA-QQYGVRGFPT 75 (103)
T ss_pred CeEEcCHHhHHHHHh--cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcch-HHHH-HHCCCCccCE
Confidence 377899999999875 3566799999999999999999999999999987 799999999999 9999 9999999999
Q ss_pred EEEEeCCCcCeeecCCCCCCHHHHHHHH
Q 012452 432 ILFFPKHSSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 432 i~~f~~g~~~~~~y~gg~~~~~~L~~fI 459 (463)
+++|++|......|.| .++.++|.+|+
T Consensus 76 ~~~~~~~~~~~~~~~g-~~~~~~l~~~~ 102 (103)
T cd03001 76 IKVFGAGKNSPQDYQG-GRTAKAIVSAA 102 (103)
T ss_pred EEEECCCCcceeecCC-CCCHHHHHHHh
Confidence 9999999555788988 69999999996
No 33
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.8e-18 Score=164.81 Aligned_cols=107 Identities=22% Similarity=0.427 Sum_probs=98.0
Q ss_pred CCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012452 351 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 430 (463)
Q Consensus 351 ~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~P 430 (463)
..|.++|..||++.+...+..+||||+||||||++|+.+.|.+++++..|++ .+.+++||||.+ +.++ .+|+|+++|
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~-p~vA-aqfgiqsIP 99 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAE-PMVA-AQFGVQSIP 99 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcc-hhHH-HHhCcCcCC
Confidence 3599999999999987677788999999999999999999999999999999 899999999999 9999 999999999
Q ss_pred EEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 431 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 431 Ti~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
|+++|++|+. ...|.| ....+.|.+||+++
T Consensus 100 tV~af~dGqp-VdgF~G-~qPesqlr~~ld~~ 129 (304)
T COG3118 100 TVYAFKDGQP-VDGFQG-AQPESQLRQFLDKV 129 (304)
T ss_pred eEEEeeCCcC-ccccCC-CCcHHHHHHHHHHh
Confidence 9999999994 455665 78899999999875
No 34
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.76 E-value=4.2e-18 Score=142.19 Aligned_cols=92 Identities=24% Similarity=0.437 Sum_probs=81.0
Q ss_pred hHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcC-CCcHHHHHHcCCCCCCCEEEEEeCC
Q 012452 360 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-GDQKEYAKQKLQLGSFPTILFFPKH 438 (463)
Q Consensus 360 ~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d-~~~~~l~~~~~~I~~~PTi~~f~~g 438 (463)
++.+++. ..++++++|+|||+||++|+.+.|.|+++++.+++ +.|++||++ .+ ++++ ++|+|.++||+++|++|
T Consensus 8 ~~~~~~~-~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~~~-~~l~-~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 8 IALDLMA-FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESSIK-PSLL-SRYGVVGFPTILLFNST 82 (100)
T ss_pred HHHHHHH-hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCCCC-HHHH-HhcCCeecCEEEEEcCC
Confidence 3444443 45799999999999999999999999999999976 889999999 67 8999 99999999999999988
Q ss_pred CcCeeecCCCCCCHHHHHHHH
Q 012452 439 SSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 439 ~~~~~~y~gg~~~~~~L~~fI 459 (463)
....|.| .++.++|.+||
T Consensus 83 --~~~~~~G-~~~~~~l~~f~ 100 (100)
T cd02999 83 --PRVRYNG-TRTLDSLAAFY 100 (100)
T ss_pred --ceeEecC-CCCHHHHHhhC
Confidence 3788888 69999999986
No 35
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.76 E-value=7.9e-18 Score=159.80 Aligned_cols=107 Identities=32% Similarity=0.643 Sum_probs=95.7
Q ss_pred CCCeeecChhhHHHHHhhc--CCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCC
Q 012452 350 SQNLVTLNRTGMENLARLD--HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 427 (463)
Q Consensus 350 ~~~V~~lt~~~f~~~i~~~--~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~ 427 (463)
.+.|+++++++|++++... ..+++|+|+||||||++|+.+.|.|+++++++++ .+.|+++|++.+ ++++ ++|+|.
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~-~~l~-~~~~I~ 105 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRA-LNLA-KRFAIK 105 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCccc-HHHH-HHcCCC
Confidence 3579999999999987632 1368999999999999999999999999999987 799999999999 9999 999999
Q ss_pred CCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHH
Q 012452 428 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 428 ~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~ 461 (463)
++||+++|++|+ .+.|.+|.++.++|.+|+.+
T Consensus 106 ~~PTl~~f~~G~--~v~~~~G~~s~e~L~~fi~~ 137 (224)
T PTZ00443 106 GYPTLLLFDKGK--MYQYEGGDRSTEKLAAFALG 137 (224)
T ss_pred cCCEEEEEECCE--EEEeeCCCCCHHHHHHHHHH
Confidence 999999999987 67777668999999999875
No 36
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.76 E-value=8.4e-18 Score=139.92 Aligned_cols=99 Identities=28% Similarity=0.600 Sum_probs=88.3
Q ss_pred eeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC--CCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012452 353 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGSFP 430 (463)
Q Consensus 353 V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~--~~v~f~~VD~d~~~~~l~~~~~~I~~~P 430 (463)
++.+++++|++.+. . ++++|+|||+||++|+.+.|.|+++++++++ .++.|++||++.+ .+++ ++|+|.++|
T Consensus 2 ~~~l~~~~f~~~~~---~-~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~-~~~~v~~~P 75 (102)
T cd03005 2 VLELTEDNFDHHIA---E-GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-RELC-SEFQVRGYP 75 (102)
T ss_pred eeECCHHHHHHHhh---c-CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-hhhH-hhcCCCcCC
Confidence 67899999999885 3 3599999999999999999999999999976 4699999999999 9999 899999999
Q ss_pred EEEEEeCCCcCeeecCCCCCCHHHHHHHH
Q 012452 431 TILFFPKHSSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 431 Ti~~f~~g~~~~~~y~gg~~~~~~L~~fI 459 (463)
|+++|++|+. ...|.| .++.++|.+||
T Consensus 76 t~~~~~~g~~-~~~~~G-~~~~~~l~~~i 102 (102)
T cd03005 76 TLLLFKDGEK-VDKYKG-TRDLDSLKEFV 102 (102)
T ss_pred EEEEEeCCCe-eeEeeC-CCCHHHHHhhC
Confidence 9999998873 567877 79999999885
No 37
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.75 E-value=1.4e-17 Score=137.37 Aligned_cols=95 Identities=18% Similarity=0.330 Sum_probs=83.0
Q ss_pred hHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCC
Q 012452 360 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHS 439 (463)
Q Consensus 360 ~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~ 439 (463)
+|++.+. .+.++++||+|||+||++|+.+.|.++++++.+.+ .+.|++||++.+ .+++ ++|+|.++||+++|++|+
T Consensus 2 ~f~~~i~-~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~-~~l~-~~~~i~~~Pt~~~~~~g~ 77 (96)
T cd02956 2 NFQQVLQ-ESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQ-PQIA-QQFGVQALPTVYLFAAGQ 77 (96)
T ss_pred ChHHHHH-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCC-HHHH-HHcCCCCCCEEEEEeCCE
Confidence 5777664 23478999999999999999999999999999987 699999999999 9999 999999999999999887
Q ss_pred cCeeecCCCCCCHHHHHHHHH
Q 012452 440 SKPIKYPSERRDVDSLMAFVD 460 (463)
Q Consensus 440 ~~~~~y~gg~~~~~~L~~fI~ 460 (463)
. ...+.| ..+.++|..||+
T Consensus 78 ~-~~~~~g-~~~~~~l~~~l~ 96 (96)
T cd02956 78 P-VDGFQG-AQPEEQLRQMLD 96 (96)
T ss_pred E-eeeecC-CCCHHHHHHHhC
Confidence 3 345666 789999999874
No 38
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.75 E-value=6.1e-18 Score=143.27 Aligned_cols=79 Identities=13% Similarity=0.260 Sum_probs=71.8
Q ss_pred hhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeC
Q 012452 358 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 437 (463)
Q Consensus 358 ~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~ 437 (463)
.++|++.+. .+.++++||.|||+||++|+.|.|.|+++++++++ .+.|++||+|++ ++++ ++|+|.++||+++|++
T Consensus 2 ~~~~~~~i~-~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~-~v~f~kVDvD~~-~~la-~~~~V~~iPTf~~fk~ 77 (114)
T cd02954 2 GWAVDQAIL-SEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN-FAVIYLVDIDEV-PDFN-KMYELYDPPTVMFFFR 77 (114)
T ss_pred HHHHHHHHh-ccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC-ceEEEEEECCCC-HHHH-HHcCCCCCCEEEEEEC
Confidence 467777775 33578999999999999999999999999999987 689999999999 9999 9999999999999999
Q ss_pred CCc
Q 012452 438 HSS 440 (463)
Q Consensus 438 g~~ 440 (463)
|+.
T Consensus 78 G~~ 80 (114)
T cd02954 78 NKH 80 (114)
T ss_pred CEE
Confidence 985
No 39
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.74 E-value=1.6e-17 Score=138.51 Aligned_cols=102 Identities=34% Similarity=0.716 Sum_probs=90.1
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC-CCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGSFP 430 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~-~~v~f~~VD~d~~~~~l~~~~~~I~~~P 430 (463)
+|.+|++++|++.+. +.+++++|+||++||++|+.+.|.|+++++.+++ .++.|+++|++.+ +++ ..+++.++|
T Consensus 1 ~v~~l~~~~f~~~i~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~-~~~~~~~~P 75 (104)
T cd02995 1 PVKVVVGKNFDEVVL--DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--DVP-SEFVVDGFP 75 (104)
T ss_pred CeEEEchhhhHHHHh--CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--hhh-hhccCCCCC
Confidence 478899999999875 3568999999999999999999999999999977 4799999999987 577 789999999
Q ss_pred EEEEEeCCC-cCeeecCCCCCCHHHHHHHH
Q 012452 431 TILFFPKHS-SKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 431 Ti~~f~~g~-~~~~~y~gg~~~~~~L~~fI 459 (463)
|+++|++|+ .....|.| ..+.++|.+||
T Consensus 76 t~~~~~~~~~~~~~~~~g-~~~~~~l~~fi 104 (104)
T cd02995 76 TILFFPAGDKSNPIKYEG-DRTLEDLIKFI 104 (104)
T ss_pred EEEEEcCCCcCCceEccC-CcCHHHHHhhC
Confidence 999999887 33677887 79999999986
No 40
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.74 E-value=1.4e-17 Score=139.38 Aligned_cols=98 Identities=18% Similarity=0.309 Sum_probs=84.8
Q ss_pred cChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEE
Q 012452 356 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 435 (463)
Q Consensus 356 lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f 435 (463)
-+.++|++++. .+++++|+|||+||++|+.+.|.|+++++.+++..+.|+.+|+| + .+++ ++|+|+++||+++|
T Consensus 5 ~~~~~~~~~i~---~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-~~~~-~~~~v~~~Pt~~~~ 78 (102)
T cd02948 5 NNQEEWEELLS---NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-IDTL-KRYRGKCEPTFLFY 78 (102)
T ss_pred cCHHHHHHHHc---cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-HHHH-HHcCCCcCcEEEEE
Confidence 36788988875 78999999999999999999999999999998645899999999 5 7889 99999999999999
Q ss_pred eCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 436 PKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 436 ~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
++|+ .+....| .+.+.|.++|++|
T Consensus 79 ~~g~--~~~~~~G-~~~~~~~~~i~~~ 102 (102)
T cd02948 79 KNGE--LVAVIRG-ANAPLLNKTITEL 102 (102)
T ss_pred ECCE--EEEEEec-CChHHHHHHHhhC
Confidence 9988 4444433 5889999999875
No 41
>PHA02278 thioredoxin-like protein
Probab=99.74 E-value=1.5e-17 Score=139.36 Aligned_cols=94 Identities=11% Similarity=0.171 Sum_probs=78.6
Q ss_pred hhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCCCCCCCEEEE
Q 012452 358 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILF 434 (463)
Q Consensus 358 ~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~---~~l~~~~~~I~~~PTi~~ 434 (463)
.++|.+.+. .++++||+|||+||++|+.|.|.++++++++.. .+.|++||+|.+. .+++ ++|+|.++||+++
T Consensus 4 ~~~~~~~i~---~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~d~~~l~-~~~~I~~iPT~i~ 78 (103)
T PHA02278 4 LVDLNTAIR---QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDVDREKAV-KLFDIMSTPVLIG 78 (103)
T ss_pred HHHHHHHHh---CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccccccHHHH-HHCCCccccEEEE
Confidence 467777775 889999999999999999999999999988655 5789999999762 5899 9999999999999
Q ss_pred EeCCCcCeeecCCCCCCHHHHHHH
Q 012452 435 FPKHSSKPIKYPSERRDVDSLMAF 458 (463)
Q Consensus 435 f~~g~~~~~~y~gg~~~~~~L~~f 458 (463)
|++|+. .....| ..+.+.|.++
T Consensus 79 fk~G~~-v~~~~G-~~~~~~l~~~ 100 (103)
T PHA02278 79 YKDGQL-VKKYED-QVTPMQLQEL 100 (103)
T ss_pred EECCEE-EEEEeC-CCCHHHHHhh
Confidence 999984 334444 6788887765
No 42
>PRK09381 trxA thioredoxin; Provisional
Probab=99.74 E-value=3.4e-17 Score=138.48 Aligned_cols=106 Identities=24% Similarity=0.397 Sum_probs=92.8
Q ss_pred CCCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCC
Q 012452 350 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 429 (463)
Q Consensus 350 ~~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~ 429 (463)
++.|.++++++|++.+. +.+++++|+||++||++|+.+.|.|+++++.+.+ ++.|+.+|++.+ ..++ ++|+|.++
T Consensus 2 ~~~v~~~~~~~~~~~v~--~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~ 76 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN-PGTA-PKYGIRGI 76 (109)
T ss_pred CCcceeeChhhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCC-hhHH-HhCCCCcC
Confidence 35789999999998653 3688999999999999999999999999999987 799999999999 9999 89999999
Q ss_pred CEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 430 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 430 PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
||+++|++|+. ...+.| ..+.++|..+|++.
T Consensus 77 Pt~~~~~~G~~-~~~~~G-~~~~~~l~~~i~~~ 107 (109)
T PRK09381 77 PTLLLFKNGEV-AATKVG-ALSKGQLKEFLDAN 107 (109)
T ss_pred CEEEEEeCCeE-EEEecC-CCCHHHHHHHHHHh
Confidence 99999998873 334555 68899999999864
No 43
>PRK10996 thioredoxin 2; Provisional
Probab=99.73 E-value=6e-17 Score=143.42 Aligned_cols=103 Identities=17% Similarity=0.423 Sum_probs=92.5
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 431 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PT 431 (463)
.+++++.++|+++++ .+++++|+|||+||++|+.+.|.|+++++++.+ ++.|+++|++.+ ++++ ++|+|.++||
T Consensus 36 ~~i~~~~~~~~~~i~---~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~-~~l~-~~~~V~~~Pt 109 (139)
T PRK10996 36 EVINATGETLDKLLQ---DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAE-RELS-ARFRIRSIPT 109 (139)
T ss_pred CCEEcCHHHHHHHHh---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCC-HHHH-HhcCCCccCE
Confidence 577789999999876 789999999999999999999999999999887 799999999999 9999 9999999999
Q ss_pred EEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 432 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 432 i~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
+++|++|+. ...+.| ..+.+.|.+||+++
T Consensus 110 lii~~~G~~-v~~~~G-~~~~e~l~~~l~~~ 138 (139)
T PRK10996 110 IMIFKNGQV-VDMLNG-AVPKAPFDSWLNEA 138 (139)
T ss_pred EEEEECCEE-EEEEcC-CCCHHHHHHHHHHh
Confidence 999998873 444555 78999999999876
No 44
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.73 E-value=4.4e-17 Score=135.97 Aligned_cols=103 Identities=37% Similarity=0.748 Sum_probs=90.9
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC-CCeEEEEEEcCC-CcHHHHHHcCCCCCC
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADG-DQKEYAKQKLQLGSF 429 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~-~~v~f~~VD~d~-~~~~l~~~~~~I~~~ 429 (463)
.|.++++++|++.+. +.+++++|+||++||++|+.+.|.|+++++.++. .++.|+.+|++. + .+++ ++|+|.++
T Consensus 1 ~~~~l~~~~~~~~~~--~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~-~~~~i~~~ 76 (105)
T cd02998 1 NVVELTDSNFDKVVG--DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN-KDLA-KKYGVSGF 76 (105)
T ss_pred CeEEcchhcHHHHhc--CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc-hhhH-HhCCCCCc
Confidence 367889999999764 4566999999999999999999999999999973 379999999999 7 9999 99999999
Q ss_pred CEEEEEeCCCcCeeecCCCCCCHHHHHHHH
Q 012452 430 PTILFFPKHSSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 430 PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI 459 (463)
||+++|.+|+.....|.| .++.++|.+||
T Consensus 77 P~~~~~~~~~~~~~~~~g-~~~~~~l~~~i 105 (105)
T cd02998 77 PTLKFFPKGSTEPVKYEG-GRDLEDLVKFV 105 (105)
T ss_pred CEEEEEeCCCCCccccCC-ccCHHHHHhhC
Confidence 999999988655777877 69999999885
No 45
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.72 E-value=5.2e-17 Score=135.52 Aligned_cols=101 Identities=21% Similarity=0.511 Sum_probs=89.3
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC-CCeEEEEEEcCC--CcHHHHHHcCCCCC
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADG--DQKEYAKQKLQLGS 428 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~-~~v~f~~VD~d~--~~~~l~~~~~~I~~ 428 (463)
.|.++++.+|++.++ .+++++|+|||+||++|+.+.|.++++++.+.+ ..+.++.+|++. + ..++ ++|+|.+
T Consensus 1 ~~~~l~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~-~~~~i~~ 75 (104)
T cd02997 1 DVVHLTDEDFRKFLK---KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH-DALK-EEYNVKG 75 (104)
T ss_pred CeEEechHhHHHHHh---hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc-HHHH-HhCCCcc
Confidence 377889999999886 677999999999999999999999999999973 368999999998 6 8999 8999999
Q ss_pred CCEEEEEeCCCcCeeecCCCCCCHHHHHHHH
Q 012452 429 FPTILFFPKHSSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 429 ~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI 459 (463)
+||+++|++|+. ...|.| ..+.++|.+||
T Consensus 76 ~Pt~~~~~~g~~-~~~~~g-~~~~~~l~~~l 104 (104)
T cd02997 76 FPTFKYFENGKF-VEKYEG-ERTAEDIIEFM 104 (104)
T ss_pred ccEEEEEeCCCe-eEEeCC-CCCHHHHHhhC
Confidence 999999998874 567776 68999998885
No 46
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.72 E-value=5.5e-17 Score=136.14 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=82.0
Q ss_pred ChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc--HHHHHHcCCCCCCCEEEE
Q 012452 357 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILF 434 (463)
Q Consensus 357 t~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~--~~l~~~~~~I~~~PTi~~ 434 (463)
+.++|++.+. ...++++||+|||+||++|+.+.|.|+++++++. ++.|++||+|++. .+++ ++|+|.++||++|
T Consensus 2 ~~~~~~~~i~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d~~~~~~~l~-~~~~V~~~Pt~~~ 77 (103)
T cd02985 2 SVEELDEALK-KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGDENDSTMELC-RREKIIEVPHFLF 77 (103)
T ss_pred CHHHHHHHHH-HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECCCChHHHHHH-HHcCCCcCCEEEE
Confidence 4578888875 3358999999999999999999999999999993 5999999999872 3788 8999999999999
Q ss_pred EeCCCcCeeecCCCCCCHHHHHHHHHH
Q 012452 435 FPKHSSKPIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 435 f~~g~~~~~~y~gg~~~~~~L~~fI~~ 461 (463)
|++|+. ...+.| .+.++|.+.|..
T Consensus 78 ~~~G~~-v~~~~G--~~~~~l~~~~~~ 101 (103)
T cd02985 78 YKDGEK-IHEEEG--IGPDELIGDVLY 101 (103)
T ss_pred EeCCeE-EEEEeC--CCHHHHHHHHHh
Confidence 998874 556666 567788777654
No 47
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.72 E-value=5.9e-17 Score=134.44 Aligned_cols=100 Identities=32% Similarity=0.735 Sum_probs=91.4
Q ss_pred cChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCC-CeEEEEEEcCCCcHHHHHHcCCCCCCCEEEE
Q 012452 356 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPTILF 434 (463)
Q Consensus 356 lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~-~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~ 434 (463)
|++++|++.+. ++++++|+||++||++|+.+.+.|+++++.+++. ++.|+.+|++++ ++++ ++|+|.++|++++
T Consensus 1 l~~~~~~~~~~---~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~-~~~~i~~~P~~~~ 75 (102)
T TIGR01126 1 LTASNFDDIVL---SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE-KDLA-SRFGVSGFPTIKF 75 (102)
T ss_pred CchhhHHHHhc---cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch-HHHH-HhCCCCcCCEEEE
Confidence 57789999876 7899999999999999999999999999999864 599999999999 9999 9999999999999
Q ss_pred EeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 435 FPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 435 f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
|++|+. ...|.| ..+.++|..||++.
T Consensus 76 ~~~~~~-~~~~~g-~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 76 FPKGKK-PVDYEG-GRDLEAIVEFVNEK 101 (102)
T ss_pred ecCCCc-ceeecC-CCCHHHHHHHHHhc
Confidence 999986 788888 79999999999874
No 48
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.71 E-value=8.5e-17 Score=143.96 Aligned_cols=87 Identities=22% Similarity=0.466 Sum_probs=78.9
Q ss_pred CCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCC--
Q 012452 351 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS-- 428 (463)
Q Consensus 351 ~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~-- 428 (463)
..+.++++++|++.+. .+.+++|+|+|||+||++|+.+.|.|+++++++++.++.|++||++++ ++++ ++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~-~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la-~~~~V~~~~ 104 (152)
T cd02962 28 EHIKYFTPKTLEEELE-RDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVA-EKFRVSTSP 104 (152)
T ss_pred CccEEcCHHHHHHHHH-hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHH-HHcCceecC
Confidence 5788999999999875 235679999999999999999999999999999765699999999999 9999 9999988
Q ss_pred ----CCEEEEEeCCCc
Q 012452 429 ----FPTILFFPKHSS 440 (463)
Q Consensus 429 ----~PTi~~f~~g~~ 440 (463)
+||+++|++|+.
T Consensus 105 ~v~~~PT~ilf~~Gk~ 120 (152)
T cd02962 105 LSKQLPTIILFQGGKE 120 (152)
T ss_pred CcCCCCEEEEEECCEE
Confidence 999999999985
No 49
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.71 E-value=7.7e-17 Score=137.01 Aligned_cols=101 Identities=20% Similarity=0.320 Sum_probs=84.7
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEec--CCCh---hHHHhHHHHHHHHHHhcCCCeEEEEEEcC-----CCcHHHHH
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYA--PWCQ---FCQAMEGSYVELADKLAGNGVKVGKFRAD-----GDQKEYAK 421 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA--~wC~---~C~~~~p~l~~la~~~~~~~v~f~~VD~d-----~~~~~l~~ 421 (463)
.++.|++.||++.+. +++.+||.||| |||+ +|+.+.|.+.+.+. .|.+++|||+ .+ .++|
T Consensus 2 g~v~L~~~nF~~~v~---~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-----~v~lakVd~~d~~~~~~-~~L~- 71 (116)
T cd03007 2 GCVDLDTVTFYKVIP---KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-----DLLVAEVGIKDYGEKLN-MELG- 71 (116)
T ss_pred CeeECChhhHHHHHh---cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-----ceEEEEEecccccchhh-HHHH-
Confidence 478999999999997 88999999999 8888 67666666655443 4899999995 34 8899
Q ss_pred HcCCCC--CCCEEEEEeCCC-cCeeecCCCCCCHHHHHHHHHHh
Q 012452 422 QKLQLG--SFPTILFFPKHS-SKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 422 ~~~~I~--~~PTi~~f~~g~-~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
++|+|+ +||||++|.+|. ..++.|.|+.++.+.|++||++.
T Consensus 72 ~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 72 ERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred HHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999 999999999985 33688998349999999999863
No 50
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.6e-17 Score=168.01 Aligned_cols=105 Identities=26% Similarity=0.548 Sum_probs=98.7
Q ss_pred CCCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC--CCeEEEEEEcCCCcHHHHHHcCCCC
Q 012452 350 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLG 427 (463)
Q Consensus 350 ~~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~--~~v~f~~VD~d~~~~~l~~~~~~I~ 427 (463)
+..|+.|+.++|+..+. .+..++|.||||||+||+.+.|.|++.|..++. ..+.+++|||..+ .++| .+|+|+
T Consensus 24 ~~~Vl~Lt~dnf~~~i~---~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~-~~y~v~ 98 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETIN---GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLA-SKYEVR 98 (493)
T ss_pred ccceEEEecccHHHHhc---cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhH-hhhcCC
Confidence 46899999999999997 889999999999999999999999999999987 3799999999999 9999 999999
Q ss_pred CCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHH
Q 012452 428 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 428 ~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~ 461 (463)
+|||+.+|.+|.. +..|.| .++.+.|+.|+.+
T Consensus 99 gyPTlkiFrnG~~-~~~Y~G-~r~adgIv~wl~k 130 (493)
T KOG0190|consen 99 GYPTLKIFRNGRS-AQDYNG-PREADGIVKWLKK 130 (493)
T ss_pred CCCeEEEEecCCc-ceeccC-cccHHHHHHHHHh
Confidence 9999999999996 699998 6999999999975
No 51
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.3e-16 Score=134.07 Aligned_cols=86 Identities=22% Similarity=0.368 Sum_probs=77.0
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 449 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~ 449 (463)
.+++++|+|||+||+||+.+.|.+++|+.+|.+ +.|++||+|+. .+++ ++++|...||++||++|+. ...+.|
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde~-~~~~-~~~~V~~~PTf~f~k~g~~-~~~~vG-- 92 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDEL-EEVA-KEFNVKAMPTFVFYKGGEE-VDEVVG-- 92 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecccC-HhHH-HhcCceEeeEEEEEECCEE-EEEEec--
Confidence 469999999999999999999999999999988 99999999996 9999 9999999999999999986 555665
Q ss_pred CCHHHHHHHHHHh
Q 012452 450 RDVDSLMAFVDAL 462 (463)
Q Consensus 450 ~~~~~L~~fI~~l 462 (463)
.+.+.|.+.|...
T Consensus 93 a~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 93 ANKAELEKKIAKH 105 (106)
T ss_pred CCHHHHHHHHHhc
Confidence 4666888888764
No 52
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.69 E-value=1.9e-16 Score=132.85 Aligned_cols=95 Identities=26% Similarity=0.621 Sum_probs=83.2
Q ss_pred hhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC--CCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEe
Q 012452 359 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 436 (463)
Q Consensus 359 ~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~--~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~ 436 (463)
++|+++. .+++++|.|||+||++|+.+.|.|+++++.+++ .++.++.+|++.. ++++ ++|+|.++||+++|+
T Consensus 7 ~~~~~~~----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~~~~-~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 7 DSFKDVR----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-SSIA-SEFGVRGYPTIKLLK 80 (104)
T ss_pred hhhhhhc----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-HhHH-hhcCCccccEEEEEc
Confidence 6777642 578999999999999999999999999999964 2599999999998 9999 999999999999997
Q ss_pred CCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 437 KHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 437 ~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
+|. ...+.| .++.++|.+|++++
T Consensus 81 ~~~--~~~~~G-~~~~~~l~~~~~~~ 103 (104)
T cd03000 81 GDL--AYNYRG-PRTKDDIVEFANRV 103 (104)
T ss_pred CCC--ceeecC-CCCHHHHHHHHHhh
Confidence 664 567877 68999999999875
No 53
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.5e-17 Score=167.44 Aligned_cols=118 Identities=27% Similarity=0.563 Sum_probs=101.0
Q ss_pred CCCCCcccccccCCCCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC-CCeEEEEEEcCCC
Q 012452 337 AGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGD 415 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~-~~v~f~~VD~d~~ 415 (463)
+--.++++++-.+..+|..+..+||++++. +.++.|||.||||||+||+++.|.|++||+.|++ .++.++++|.+.|
T Consensus 352 p~~kSqpiPe~~~~~pVkvvVgknfd~iv~--de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaN 429 (493)
T KOG0190|consen 352 PHLKSQPIPEDNDRSPVKVVVGKNFDDIVL--DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAN 429 (493)
T ss_pred cccccCCCCcccccCCeEEEeecCHHHHhh--ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccc
Confidence 333445555555556899999999999885 7899999999999999999999999999999998 4899999999998
Q ss_pred cHHHHHHcCCCCCCCEEEEEeCCCcC-eeecCCCCCCHHHHHHHHHH
Q 012452 416 QKEYAKQKLQLGSFPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 416 ~~~l~~~~~~I~~~PTi~~f~~g~~~-~~~y~gg~~~~~~L~~fI~~ 461 (463)
++- .+.+.+||||++|+.|.+. ++.|.| .|+.++|..||++
T Consensus 430 --d~~--~~~~~~fPTI~~~pag~k~~pv~y~g-~R~le~~~~fi~~ 471 (493)
T KOG0190|consen 430 --DVP--SLKVDGFPTILFFPAGHKSNPVIYNG-DRTLEDLKKFIKK 471 (493)
T ss_pred --cCc--cccccccceEEEecCCCCCCCcccCC-CcchHHHHhhhcc
Confidence 544 5678889999999988864 899988 7999999999975
No 54
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.68 E-value=3.7e-16 Score=133.40 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=85.5
Q ss_pred CeeecCh-hhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012452 352 NLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 430 (463)
Q Consensus 352 ~V~~lt~-~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~P 430 (463)
.+..++. ++|.+.+. ++++++|+||++||++|+.+.|.++++++++.+ +.|++||++++ ++++ ++|+|.++|
T Consensus 5 ~v~~i~~~~~~~~~i~---~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~~~-~~l~-~~~~v~~vP 77 (113)
T cd02989 5 KYREVSDEKEFFEIVK---SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAEKA-PFLV-EKLNIKVLP 77 (113)
T ss_pred CeEEeCCHHHHHHHHh---CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcccC-HHHH-HHCCCccCC
Confidence 5667766 88988886 678999999999999999999999999999876 89999999999 9999 999999999
Q ss_pred EEEEEeCCCcC-----eeecCC-CCCCHHHHHHHH
Q 012452 431 TILFFPKHSSK-----PIKYPS-ERRDVDSLMAFV 459 (463)
Q Consensus 431 Ti~~f~~g~~~-----~~~y~g-g~~~~~~L~~fI 459 (463)
|+++|++|+.. .....+ +..+.+++..|+
T Consensus 78 t~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 78 TVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 99999999852 112222 467778888775
No 55
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.68 E-value=2.2e-16 Score=134.74 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=84.8
Q ss_pred CCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012452 351 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 430 (463)
Q Consensus 351 ~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~P 430 (463)
..+.++++++|.+.+...+.+++++|+||+|||++|+.+.|.|+++++++.+ +.|++||++++ +++ ++|+|.++|
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~~~--~l~-~~~~i~~~P 78 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAEKA--FLV-NYLDIKVLP 78 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEchhh--HHH-HhcCCCcCC
Confidence 3578899999999886222248999999999999999999999999999976 89999999977 889 899999999
Q ss_pred EEEEEeCCCcCeeecC------CCCCCHHHHHHHH
Q 012452 431 TILFFPKHSSKPIKYP------SERRDVDSLMAFV 459 (463)
Q Consensus 431 Ti~~f~~g~~~~~~y~------gg~~~~~~L~~fI 459 (463)
|+++|++|+.. ..+. |...+.+.|.+++
T Consensus 79 t~~~f~~G~~v-~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 79 TLLVYKNGELI-DNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEEEECCEEE-EEEecHHHhCCCCCCHHHHHHHh
Confidence 99999999852 2222 2346677777765
No 56
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.68 E-value=3e-16 Score=132.15 Aligned_cols=98 Identities=12% Similarity=0.145 Sum_probs=86.7
Q ss_pred CCeeecChhhHHHHHhhcCCCCcEEEEEecCC--ChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCC
Q 012452 351 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPW--CQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS 428 (463)
Q Consensus 351 ~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~w--C~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~ 428 (463)
....+++..||++.+. .+..++|.||++| ||+|+.+.|.|++++++|.+ .+.|++||++++ ++++ .+|+|.+
T Consensus 10 ~~~~~~~~~~~~~~~~---~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~-~v~f~kVdid~~-~~la-~~f~V~s 83 (111)
T cd02965 10 HGWPRVDAATLDDWLA---AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG-RFRAAVVGRADE-QALA-ARFGVLR 83 (111)
T ss_pred cCCcccccccHHHHHh---CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC-cEEEEEEECCCC-HHHH-HHcCCCc
Confidence 4677889999999886 8899999999997 99999999999999999988 789999999999 9999 9999999
Q ss_pred CCEEEEEeCCCcCeeecCCCCCCHHHHH
Q 012452 429 FPTILFFPKHSSKPIKYPSERRDVDSLM 456 (463)
Q Consensus 429 ~PTi~~f~~g~~~~~~y~gg~~~~~~L~ 456 (463)
+||+++|++|+. .....| ..+.+++.
T Consensus 84 IPTli~fkdGk~-v~~~~G-~~~~~e~~ 109 (111)
T cd02965 84 TPALLFFRDGRY-VGVLAG-IRDWDEYV 109 (111)
T ss_pred CCEEEEEECCEE-EEEEeC-ccCHHHHh
Confidence 999999999983 334444 67777765
No 57
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.68 E-value=5.7e-16 Score=132.47 Aligned_cols=103 Identities=24% Similarity=0.533 Sum_probs=86.3
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC--CCeEEEEEEcCCC-cHHHHHHcCCCCC
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGD-QKEYAKQKLQLGS 428 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~--~~v~f~~VD~d~~-~~~l~~~~~~I~~ 428 (463)
.++++++++|++.+. +.++++||+|||+||++|+.+.|.|+++++.+++ ..+.|+.+||+.+ +.+++ ++|+|++
T Consensus 2 ~v~~l~~~~f~~~i~--~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~-~~~~i~~ 78 (114)
T cd02992 2 PVIVLDAASFNSALL--GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALC-RDFGVTG 78 (114)
T ss_pred CeEECCHHhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHH-HhCCCCC
Confidence 688999999999886 3457999999999999999999999999999864 2589999998642 27899 8999999
Q ss_pred CCEEEEEeCCCcC---eeecCCCCCCHHHHHH
Q 012452 429 FPTILFFPKHSSK---PIKYPSERRDVDSLMA 457 (463)
Q Consensus 429 ~PTi~~f~~g~~~---~~~y~gg~~~~~~L~~ 457 (463)
+||+++|++|..+ ..+|.|..+..+++..
T Consensus 79 ~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 79 YPTLRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred CCEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 9999999988753 3677776577777644
No 58
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.67 E-value=5.9e-16 Score=136.15 Aligned_cols=101 Identities=11% Similarity=0.192 Sum_probs=83.3
Q ss_pred ChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEE-EE
Q 012452 357 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL-FF 435 (463)
Q Consensus 357 t~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~-~f 435 (463)
+.++|++.+. ...+++|||.|||+||++|+.|.|.|+++++++++ .+.|++||+|++ ++++ ++|+|++.||++ ||
T Consensus 10 s~~e~d~~I~-~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~-~~~~~kVDVDe~-~dla-~~y~I~~~~t~~~ff 85 (142)
T PLN00410 10 SGWAVDQAIL-AEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN-FAVIYLVDITEV-PDFN-TMYELYDPCTVMFFF 85 (142)
T ss_pred CHHHHHHHHH-hcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCCC-HHHH-HHcCccCCCcEEEEE
Confidence 4678888875 33688999999999999999999999999999987 688899999999 9999 999999777666 88
Q ss_pred eCCCcCeeecCCC--------CCCHHHHHHHHHHh
Q 012452 436 PKHSSKPIKYPSE--------RRDVDSLMAFVDAL 462 (463)
Q Consensus 436 ~~g~~~~~~y~gg--------~~~~~~L~~fI~~l 462 (463)
++|+. .+.+..| ..+.++|.+-++.+
T Consensus 86 k~g~~-~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 86 RNKHI-MIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred ECCeE-EEEEecccccccccccCCHHHHHHHHHHH
Confidence 88874 3444433 46778888877754
No 59
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.67 E-value=4.7e-16 Score=127.77 Aligned_cols=99 Identities=31% Similarity=0.677 Sum_probs=87.5
Q ss_pred ecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhc-CCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEE
Q 012452 355 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 433 (463)
Q Consensus 355 ~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~-~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~ 433 (463)
+++.++|.+.+. ++++++|+||++||++|+.+.|.|+++++.+. +.++.|+.+|++.+ ..++ ++|+|.++||++
T Consensus 2 ~l~~~~~~~~i~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~-~~~~i~~~Pt~~ 76 (101)
T cd02961 2 ELTDDNFDELVK---DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-NDLC-SEYGVRGYPTIK 76 (101)
T ss_pred cccHHHHHHHHh---CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-HHHH-HhCCCCCCCEEE
Confidence 578889999887 66699999999999999999999999999994 23799999999998 9999 999999999999
Q ss_pred EEeCCCcCeeecCCCCCCHHHHHHHH
Q 012452 434 FFPKHSSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 434 ~f~~g~~~~~~y~gg~~~~~~L~~fI 459 (463)
+|++++.....|.| ..+.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~g-~~~~~~i~~~~ 101 (101)
T cd02961 77 LFPNGSKEPVKYEG-PRTLESLVEFI 101 (101)
T ss_pred EEcCCCcccccCCC-CcCHHHHHhhC
Confidence 99988444778887 58999998875
No 60
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.66 E-value=1.5e-15 Score=125.53 Aligned_cols=100 Identities=25% Similarity=0.432 Sum_probs=86.5
Q ss_pred cChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEE
Q 012452 356 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 435 (463)
Q Consensus 356 lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f 435 (463)
++.++|.+.+. +.+++++|+||++||++|+.+.|.|+++++.+.+ ++.|+.+|++.+ ..++ ++|+|.++||+++|
T Consensus 1 i~~~~~~~~~~--~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~P~~~~~ 75 (101)
T TIGR01068 1 LTDANFDETIA--SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDEN-PDIA-AKYGIRSIPTLLLF 75 (101)
T ss_pred CCHHHHHHHHh--hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCC-HHHH-HHcCCCcCCEEEEE
Confidence 35678888775 3467999999999999999999999999999976 799999999999 9999 99999999999999
Q ss_pred eCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 436 PKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 436 ~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
++|+. ...+.| ..+.+.|.+||++.
T Consensus 76 ~~g~~-~~~~~g-~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 76 KNGKE-VDRSVG-ALPKAALKQLINKN 100 (101)
T ss_pred eCCcE-eeeecC-CCCHHHHHHHHHhh
Confidence 98874 344455 68899999999864
No 61
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.65 E-value=1.8e-15 Score=127.36 Aligned_cols=100 Identities=10% Similarity=0.226 Sum_probs=82.1
Q ss_pred hhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeC
Q 012452 358 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 437 (463)
Q Consensus 358 ~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~ 437 (463)
.+++++.+. ...+++|+|.|+|+||++|+.|.|.|+++++++++ .+.|++||+|+. ++++ ++|+|...||++||++
T Consensus 2 ~~~~d~~i~-~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~-~~~f~kVDVDev-~dva-~~y~I~amPtfvffkn 77 (114)
T cd02986 2 KKEVDQAIK-STAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK-MASIYLVDVDKV-PVYT-QYFDISYIPSTIFFFN 77 (114)
T ss_pred HHHHHHHHH-hcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC-ceEEEEEecccc-HHHH-HhcCceeCcEEEEEEC
Confidence 356777665 23689999999999999999999999999999976 499999999999 9999 9999999999999999
Q ss_pred CCcCeeecCCCC--------CCHHHHHHHHHH
Q 012452 438 HSSKPIKYPSER--------RDVDSLMAFVDA 461 (463)
Q Consensus 438 g~~~~~~y~gg~--------~~~~~L~~fI~~ 461 (463)
|+-..+.+..|. .+.++++..|+.
T Consensus 78 gkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 78 GQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred CcEEEEecCCCCCcEEEEEcCchhHHHHHHHH
Confidence 986555554432 234666666654
No 62
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.65 E-value=8.2e-16 Score=128.90 Aligned_cols=95 Identities=18% Similarity=0.339 Sum_probs=80.2
Q ss_pred hhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHH---HHHHHHhcCCCeEEEEEEcCCC---cHHHHHHcCCCCCCCEE
Q 012452 359 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGD---QKEYAKQKLQLGSFPTI 432 (463)
Q Consensus 359 ~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l---~~la~~~~~~~v~f~~VD~d~~---~~~l~~~~~~I~~~PTi 432 (463)
++|++.++ +++++||+||++||++|+.+.+.+ .++++.+.+ ++.++.||++.+ ..+++ ++|+|.++||+
T Consensus 2 ~~~~~~~~---~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~-~~~~i~~~Pti 76 (104)
T cd02953 2 AALAQALA---QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALL-KRFGVFGPPTY 76 (104)
T ss_pred HHHHHHHH---cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHH-HHcCCCCCCEE
Confidence 46777665 889999999999999999999988 688888886 799999999873 26888 89999999999
Q ss_pred EEEeC--CCcCeeecCCCCCCHHHHHHHHH
Q 012452 433 LFFPK--HSSKPIKYPSERRDVDSLMAFVD 460 (463)
Q Consensus 433 ~~f~~--g~~~~~~y~gg~~~~~~L~~fI~ 460 (463)
++|++ |+ ....+.| ..+.++|.++|+
T Consensus 77 ~~~~~~~g~-~~~~~~G-~~~~~~l~~~l~ 104 (104)
T cd02953 77 LFYGPGGEP-EPLRLPG-FLTADEFLEALE 104 (104)
T ss_pred EEECCCCCC-CCccccc-ccCHHHHHHHhC
Confidence 99985 44 3566666 799999998874
No 63
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.64 E-value=1.8e-15 Score=124.77 Aligned_cols=96 Identities=24% Similarity=0.398 Sum_probs=80.2
Q ss_pred ChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEe
Q 012452 357 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 436 (463)
Q Consensus 357 t~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~ 436 (463)
+.++|++++... .+++++|+||++||++|+.|.|.|+++++++.. ++.++++|++.+ ++++ ++|+|.++||+++|+
T Consensus 1 s~~~~~~~~~~~-~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-~i~~~~vd~~~~-~~~~-~~~~i~~~Pt~~~~~ 76 (97)
T cd02984 1 SEEEFEELLKSD-ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-SVLFLSIEAEEL-PEIS-EKFEITAVPTFVFFR 76 (97)
T ss_pred CHHHHHHHHhhC-CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-ceEEEEEccccC-HHHH-HhcCCccccEEEEEE
Confidence 356788887622 269999999999999999999999999999744 799999999998 9999 999999999999999
Q ss_pred CCCcCeeecCCCCCCHHHHHHHH
Q 012452 437 KHSSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 437 ~g~~~~~~y~gg~~~~~~L~~fI 459 (463)
+|+ .+....| .+.++|.+.|
T Consensus 77 ~g~--~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 77 NGT--IVDRVSG-ADPKELAKKV 96 (97)
T ss_pred CCE--EEEEEeC-CCHHHHHHhh
Confidence 887 4444332 5778887766
No 64
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.63 E-value=3.4e-15 Score=132.67 Aligned_cols=98 Identities=22% Similarity=0.348 Sum_probs=80.9
Q ss_pred hhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc-HHHHHHcCCCCCCCEEEEEe
Q 012452 358 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFFP 436 (463)
Q Consensus 358 ~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~-~~l~~~~~~I~~~PTi~~f~ 436 (463)
...|++.+. .++++||+|||+||++|+.+.|.|+++++.+.+ .+.|+.||++.+. .+++ ++|+|.++||++||+
T Consensus 10 ~~~~~~a~~---~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~-~~~~V~~iPt~v~~~ 84 (142)
T cd02950 10 STPPEVALS---NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEI-DRYRVDGIPHFVFLD 84 (142)
T ss_pred cCCHHHHHh---CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHH-HHcCCCCCCEEEEEC
Confidence 356677665 789999999999999999999999999999987 6888888887652 5788 899999999999996
Q ss_pred -CCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 437 -KHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 437 -~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
+|+ ....+.| ..+.++|.++|+++
T Consensus 85 ~~G~-~v~~~~G-~~~~~~l~~~l~~l 109 (142)
T cd02950 85 REGN-EEGQSIG-LQPKQVLAQNLDAL 109 (142)
T ss_pred CCCC-EEEEEeC-CCCHHHHHHHHHHH
Confidence 565 2344555 68889999998875
No 65
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.60 E-value=6.1e-15 Score=135.47 Aligned_cols=107 Identities=19% Similarity=0.270 Sum_probs=88.9
Q ss_pred CCeeecCh-hhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCC
Q 012452 351 QNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 429 (463)
Q Consensus 351 ~~V~~lt~-~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~ 429 (463)
..|.+++. ++|.+.+...+.+.+|||.||++||++|+.|.|.|++|+.+|.. +.|++||++.. +++ .+|+|.++
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d~~--~l~-~~f~v~~v 136 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRASAT--GAS-DEFDTDAL 136 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEeccch--hhH-HhCCCCCC
Confidence 46888988 99999886333345999999999999999999999999999965 99999999976 788 89999999
Q ss_pred CEEEEEeCCCcC--e---eecCCCCCCHHHHHHHHHHh
Q 012452 430 PTILFFPKHSSK--P---IKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 430 PTi~~f~~g~~~--~---~~y~gg~~~~~~L~~fI~~l 462 (463)
||+++|++|+.. . ....|...+.+.|..|+.+.
T Consensus 137 PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 137 PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 999999999853 1 12233467888999988754
No 66
>PTZ00102 disulphide isomerase; Provisional
Probab=99.60 E-value=9.3e-15 Score=154.77 Aligned_cols=108 Identities=26% Similarity=0.544 Sum_probs=96.8
Q ss_pred CCCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC-CCeEEEEEEcCCCcHHHHHHcCCCCC
Q 012452 350 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGS 428 (463)
Q Consensus 350 ~~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~-~~v~f~~VD~d~~~~~l~~~~~~I~~ 428 (463)
...|..++.++|++.+. +.+++|||+|||+||++|+.+.|.|+++++.+++ ..+.|+++|++.+ ...+ ++|+|++
T Consensus 356 ~~~v~~l~~~~f~~~v~--~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~-~~~~-~~~~v~~ 431 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVF--KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN-ETPL-EEFSWSA 431 (477)
T ss_pred CCCeEEecccchHHHHh--cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC-ccch-hcCCCcc
Confidence 45799999999999864 4789999999999999999999999999999876 3699999999998 7888 8999999
Q ss_pred CCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 429 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 429 ~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
+||+++|++|+..+..|.| .++.++|.+||++.
T Consensus 432 ~Pt~~~~~~~~~~~~~~~G-~~~~~~l~~~i~~~ 464 (477)
T PTZ00102 432 FPTILFVKAGERTPIPYEG-ERTVEGFKEFVNKH 464 (477)
T ss_pred cCeEEEEECCCcceeEecC-cCCHHHHHHHHHHc
Confidence 9999999998876678888 79999999999874
No 67
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.59 E-value=9.1e-15 Score=153.73 Aligned_cols=105 Identities=27% Similarity=0.589 Sum_probs=94.6
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCC--CeEEEEEEcCCCcHHHHHHcCCCCCC
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQKEYAKQKLQLGSF 429 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~--~v~f~~VD~d~~~~~l~~~~~~I~~~ 429 (463)
.|..|+.++|+++++ .+++++|+|||+||++|+.+.|.|.++++.+.+. ++.|+.|||+.+ .++| ++|+|.++
T Consensus 2 ~v~~l~~~~~~~~i~---~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~-~~~~i~~~ 76 (462)
T TIGR01130 2 DVLVLTKDNFDDFIK---SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLA-QKYGVSGY 76 (462)
T ss_pred CceECCHHHHHHHHh---cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHH-HhCCCccc
Confidence 588999999999987 7889999999999999999999999999998753 599999999999 9999 99999999
Q ss_pred CEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 430 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 430 PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
||+++|++|+.....|.| .++.++|.+||+++
T Consensus 77 Pt~~~~~~g~~~~~~~~g-~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 77 PTLKIFRNGEDSVSDYNG-PRDADGIVKYMKKQ 108 (462)
T ss_pred cEEEEEeCCccceeEecC-CCCHHHHHHHHHHh
Confidence 999999988842477877 69999999999864
No 68
>PTZ00051 thioredoxin; Provisional
Probab=99.58 E-value=1e-14 Score=120.55 Aligned_cols=94 Identities=22% Similarity=0.323 Sum_probs=78.3
Q ss_pred eeecC-hhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012452 353 LVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 431 (463)
Q Consensus 353 V~~lt-~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PT 431 (463)
|.+++ .++|+++++ .+++++|+||++||++|+.+.|.|+++++++.+ +.|+.+|++++ .+++ ++|+|.++||
T Consensus 2 v~~i~~~~~~~~~~~---~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~-~~~~-~~~~v~~~Pt 74 (98)
T PTZ00051 2 VHIVTSQAEFESTLS---QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVDEL-SEVA-EKENITSMPT 74 (98)
T ss_pred eEEecCHHHHHHHHh---cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECcch-HHHH-HHCCCceeeE
Confidence 34444 467888775 789999999999999999999999999998865 99999999998 9999 9999999999
Q ss_pred EEEEeCCCcCeeecCCCCCCHHHHH
Q 012452 432 ILFFPKHSSKPIKYPSERRDVDSLM 456 (463)
Q Consensus 432 i~~f~~g~~~~~~y~gg~~~~~~L~ 456 (463)
+++|++|+. ...+.| ...++|.
T Consensus 75 ~~~~~~g~~-~~~~~G--~~~~~~~ 96 (98)
T PTZ00051 75 FKVFKNGSV-VDTLLG--ANDEALK 96 (98)
T ss_pred EEEEeCCeE-EEEEeC--CCHHHhh
Confidence 999998874 344554 4556554
No 69
>PTZ00102 disulphide isomerase; Provisional
Probab=99.58 E-value=1.4e-14 Score=153.51 Aligned_cols=104 Identities=27% Similarity=0.597 Sum_probs=94.6
Q ss_pred CCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC--CCeEEEEEEcCCCcHHHHHHcCCCCC
Q 012452 351 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGS 428 (463)
Q Consensus 351 ~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~--~~v~f~~VD~d~~~~~l~~~~~~I~~ 428 (463)
..+..|+.++|++++. .++.++|+|||+||++|+.+.|.|+++++.+.. .++.|+.|||+.+ .++| ++|+|.+
T Consensus 32 ~~v~~l~~~~f~~~i~---~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-~~l~-~~~~i~~ 106 (477)
T PTZ00102 32 EHVTVLTDSTFDKFIT---ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-MELA-QEFGVRG 106 (477)
T ss_pred CCcEEcchhhHHHHHh---cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-HHHH-HhcCCCc
Confidence 4689999999999886 778999999999999999999999999988864 3699999999999 9999 9999999
Q ss_pred CCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 429 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 429 ~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
+||+++|++|+ .+.|.| .++.+.|.+|++++
T Consensus 107 ~Pt~~~~~~g~--~~~y~g-~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 107 YPTIKFFNKGN--PVNYSG-GRTADGIVSWIKKL 137 (477)
T ss_pred ccEEEEEECCc--eEEecC-CCCHHHHHHHHHHh
Confidence 99999999998 458887 69999999999875
No 70
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.58 E-value=1.1e-14 Score=120.53 Aligned_cols=87 Identities=20% Similarity=0.342 Sum_probs=77.5
Q ss_pred CCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCC
Q 012452 369 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE 448 (463)
Q Consensus 369 ~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg 448 (463)
+.+++++|+||++||+.|+.+.|.++++++++.+ ++.++.+|++++ ++++ .+++|.++||+++|++|+. ...+.|
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~-~~l~-~~~~v~~vPt~~i~~~g~~-v~~~~g- 85 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDED-QEIA-EAAGIMGTPTVQFFKDKEL-VKEISG- 85 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCC-HHHH-HHCCCeeccEEEEEECCeE-EEEEeC-
Confidence 4789999999999999999999999999999987 799999999999 9999 9999999999999998763 445555
Q ss_pred CCCHHHHHHHHH
Q 012452 449 RRDVDSLMAFVD 460 (463)
Q Consensus 449 ~~~~~~L~~fI~ 460 (463)
..+.++|.+||+
T Consensus 86 ~~~~~~~~~~l~ 97 (97)
T cd02949 86 VKMKSEYREFIE 97 (97)
T ss_pred CccHHHHHHhhC
Confidence 688899988874
No 71
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.57 E-value=2e-14 Score=122.70 Aligned_cols=88 Identities=20% Similarity=0.340 Sum_probs=76.9
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcC-eeecCCC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSK-PIKYPSE 448 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~-~~~y~gg 448 (463)
.+..++|+|||+||++|+.+.|.++++++.+ + .+.|..+|++++ ++++ .+|+|.++||+++|++|+.. .+.+.|
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d~~-~~l~-~~~~v~~vPt~~i~~~g~~~~~~~~~G- 95 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFDED-KEKA-EKYGVERVPTTIFLQDGGKDGGIRYYG- 95 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCCcC-HHHH-HHcCCCcCCEEEEEeCCeecceEEEEe-
Confidence 5677999999999999999999999999887 4 599999999998 9999 99999999999999987542 346666
Q ss_pred CCCHHHHHHHHHHh
Q 012452 449 RRDVDSLMAFVDAL 462 (463)
Q Consensus 449 ~~~~~~L~~fI~~l 462 (463)
....++|.+||+.+
T Consensus 96 ~~~~~el~~~i~~i 109 (113)
T cd02975 96 LPAGYEFASLIEDI 109 (113)
T ss_pred cCchHHHHHHHHHH
Confidence 67888999999875
No 72
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.55 E-value=5.1e-14 Score=121.76 Aligned_cols=101 Identities=8% Similarity=0.148 Sum_probs=80.2
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc----------HHHHH
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------KEYAK 421 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~----------~~l~~ 421 (463)
.+..++.++|.+.++ .++.++|+||++|||+|+.+.|.|++++++. ++.|+.||++.+. .++.
T Consensus 7 ~~~~it~~~~~~~i~---~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~- 79 (122)
T TIGR01295 7 GLEVTTVVRALEALD---KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFR- 79 (122)
T ss_pred cceecCHHHHHHHHH---cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHH-
Confidence 566778888888886 7889999999999999999999999999983 4778999988541 2455
Q ss_pred HcCC----CCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHH
Q 012452 422 QKLQ----LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 460 (463)
Q Consensus 422 ~~~~----I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~ 460 (463)
++|+ |.++||+++|++|+. .....|+..+.++|.+|+.
T Consensus 80 ~~~~i~~~i~~~PT~v~~k~Gk~-v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 80 SRFGIPTSFMGTPTFVHITDGKQ-VSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred HHcCCcccCCCCCEEEEEeCCeE-EEEEeCCCCCHHHHHHHhh
Confidence 5555 556999999999985 3334454678999999874
No 73
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.53 E-value=7.9e-14 Score=120.88 Aligned_cols=97 Identities=22% Similarity=0.475 Sum_probs=78.1
Q ss_pred hHHHHHhhcCCC-CcEEEEEecCCChhHHHhHHHHH---HHHHHhcCCCeEEEEEEcCCC------------cHHHHHHc
Q 012452 360 GMENLARLDHRQ-EPWLVVLYAPWCQFCQAMEGSYV---ELADKLAGNGVKVGKFRADGD------------QKEYAKQK 423 (463)
Q Consensus 360 ~f~~~i~~~~~~-k~vlV~FyA~wC~~C~~~~p~l~---~la~~~~~~~v~f~~VD~d~~------------~~~l~~~~ 423 (463)
.+++..+ .+ ++++|+|||+||++|+.++|.+. .+.+.+.+ ++.++.||++.+ +.+++ .+
T Consensus 5 ~~~~a~~---~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~-~~ 79 (125)
T cd02951 5 DLAEAAA---DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELA-RK 79 (125)
T ss_pred HHHHHHH---cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHH-HH
Confidence 4445444 78 99999999999999999999885 66667765 689999999863 26888 89
Q ss_pred CCCCCCCEEEEEeCC-CcCeeecCCCCCCHHHHHHHHHHh
Q 012452 424 LQLGSFPTILFFPKH-SSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 424 ~~I~~~PTi~~f~~g-~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
|+|.++||++||.++ ++....+.| ..+.+.+.++|+.+
T Consensus 80 ~~v~~~Pt~~~~~~~gg~~~~~~~G-~~~~~~~~~~l~~~ 118 (125)
T cd02951 80 YRVRFTPTVIFLDPEGGKEIARLPG-YLPPDEFLAYLEYV 118 (125)
T ss_pred cCCccccEEEEEcCCCCceeEEecC-CCCHHHHHHHHHHH
Confidence 999999999999876 443455555 68889999998865
No 74
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.53 E-value=1.4e-14 Score=138.11 Aligned_cols=88 Identities=31% Similarity=0.656 Sum_probs=81.1
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC--CCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPS 447 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~--~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~g 447 (463)
.+..|+|.||||||.||+++.|.|.++.-.+++ ..++++++||... +.++ .+|+|++||||.+|+++. .+.|.|
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f-~aiA-nefgiqGYPTIk~~kgd~--a~dYRG 117 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF-PAIA-NEFGIQGYPTIKFFKGDH--AIDYRG 117 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc-hhhH-hhhccCCCceEEEecCCe--eeecCC
Confidence 578999999999999999999999999988876 4689999999999 9999 999999999999999998 799998
Q ss_pred CCCCHHHHHHHHHHh
Q 012452 448 ERRDVDSLMAFVDAL 462 (463)
Q Consensus 448 g~~~~~~L~~fI~~l 462 (463)
.++.+.|++|....
T Consensus 118 -~R~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 118 -GREKDAIIEFAHRC 131 (468)
T ss_pred -CccHHHHHHHHHhc
Confidence 59999999998653
No 75
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.51 E-value=7.9e-14 Score=129.85 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=85.9
Q ss_pred CCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012452 351 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 430 (463)
Q Consensus 351 ~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~P 430 (463)
..|.+++.++|...+...+.+.+|||.||++||++|+.|.|.|++||.+|.. +.|++||++.. . .+|+|.++|
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad~~----~-~~~~i~~lP 154 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIISTQC----I-PNYPDKNLP 154 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhHHh----H-hhCCCCCCC
Confidence 5789999999998765333356899999999999999999999999999975 99999999754 5 689999999
Q ss_pred EEEEEeCCCcC--e---eecCCCCCCHHHHHHHHHHh
Q 012452 431 TILFFPKHSSK--P---IKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 431 Ti~~f~~g~~~--~---~~y~gg~~~~~~L~~fI~~l 462 (463)
|+++|++|+.. . ....|...+.++|..+|.+.
T Consensus 155 Tlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 155 TILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 99999999853 1 12233467889999888653
No 76
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.51 E-value=3.7e-14 Score=135.65 Aligned_cols=100 Identities=26% Similarity=0.533 Sum_probs=89.6
Q ss_pred cChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC----CCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012452 356 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG----NGVKVGKFRADGDQKEYAKQKLQLGSFPT 431 (463)
Q Consensus 356 lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~----~~v~f~~VD~d~~~~~l~~~~~~I~~~PT 431 (463)
++.+|++.++. .+..|+|.|||+||++++.++|+|++.|++++. .++.+++|||+.+ .+++ .+|.|..|||
T Consensus 1 lt~~N~~~il~---s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-~~ia-~ky~I~KyPT 75 (375)
T KOG0912|consen 1 LTSENIDSILD---SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-DDIA-DKYHINKYPT 75 (375)
T ss_pred CccccHHHhhc---cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-hHHh-hhhccccCce
Confidence 45678888876 799999999999999999999999999988754 4799999999999 9999 9999999999
Q ss_pred EEEEeCCCcCeeecCCCCCCHHHHHHHHHH
Q 012452 432 ILFFPKHSSKPIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 432 i~~f~~g~~~~~~y~gg~~~~~~L~~fI~~ 461 (463)
+.+|.+|.-.-..|.| .|+++.|.+||++
T Consensus 76 lKvfrnG~~~~rEYRg-~RsVeaL~efi~k 104 (375)
T KOG0912|consen 76 LKVFRNGEMMKREYRG-QRSVEALIEFIEK 104 (375)
T ss_pred eeeeeccchhhhhhcc-chhHHHHHHHHHH
Confidence 9999999864457888 8999999999985
No 77
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=99.50 E-value=1.8e-13 Score=126.57 Aligned_cols=154 Identities=15% Similarity=0.163 Sum_probs=107.9
Q ss_pred cEEEEechhHHHHHH-HHHHHcC----CCeEEEEEeCCCCcH--HHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTG----RPFRVFSLDTGRLNP--ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 185 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~----~~i~vi~~DTg~~fp--eT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~ 185 (463)
+++|++|||+||+++ +++.+.. .++.++|+|+|..+. ++.++++++++.+|++++++.... ..+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~- 71 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVAL--------APK- 71 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeecc--------ccC-
Confidence 488999999998766 7776654 379999999998774 999999999999999998772110 001
Q ss_pred CCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCceecCC--CCcC--CcCCCCCeEEEEeCccC
Q 012452 186 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDP--VFEG--LEGGVGSLVKWNPVANV 259 (463)
Q Consensus 186 ~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~~d~--~~~~--~~~~~~~~~k~~PI~dW 259 (463)
.......+|...+..-+.++.. +.+.+++|.+.++.. .+.....+.... ...+ ......+...++||.+|
T Consensus 72 ---~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~-e~~l~~l~~g~~~~~l~~~~~~~~~~~~~virPl~~~ 147 (185)
T cd01992 72 ---PGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQA-ETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPLLGI 147 (185)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHH-HHHHHHHHccCCcccccCCCcccCCCCCeEECCCCCC
Confidence 1123445677777777877776 456899999999974 332111110000 0000 00112457789999999
Q ss_pred cHHHHHHHHHhCCCCccchh
Q 012452 260 KGNDIWNFLRTMDVPINSLH 279 (463)
Q Consensus 260 t~~DVw~yi~~~~lp~npLy 279 (463)
+..|||.|.+++++|+.+-+
T Consensus 148 ~k~eI~~~~~~~~l~~~~~~ 167 (185)
T cd01992 148 TRAEIEAYLRENGLPWWEDP 167 (185)
T ss_pred CHHHHHHHHHHcCCCeEECC
Confidence 99999999999999987665
No 78
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.50 E-value=1.9e-13 Score=109.95 Aligned_cols=92 Identities=29% Similarity=0.503 Sum_probs=78.7
Q ss_pred hHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCC
Q 012452 360 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHS 439 (463)
Q Consensus 360 ~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~ 439 (463)
+|++.+. .+++++|+||++||++|+.+.+.++++++. .+ ++.|+.+|++.+ .+++ ++|++.++||+++|.+|+
T Consensus 2 ~~~~~~~---~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~-~~~~~~i~~~~~-~~~~-~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 2 EFEELIK---SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP-KVKFVKVDVDEN-PELA-EEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred chHHHHh---cCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC-CceEEEEECCCC-hhHH-HhcCcccccEEEEEECCE
Confidence 5666665 559999999999999999999999999988 33 699999999998 8999 999999999999999987
Q ss_pred cCeeecCCCCCCHHHHHHHHH
Q 012452 440 SKPIKYPSERRDVDSLMAFVD 460 (463)
Q Consensus 440 ~~~~~y~gg~~~~~~L~~fI~ 460 (463)
. ...+.| ..+.+.|.+||+
T Consensus 75 ~-~~~~~g-~~~~~~l~~~i~ 93 (93)
T cd02947 75 E-VDRVVG-ADPKEELEEFLE 93 (93)
T ss_pred E-EEEEec-CCCHHHHHHHhC
Confidence 4 455555 577899998873
No 79
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.49 E-value=2.5e-13 Score=113.17 Aligned_cols=88 Identities=22% Similarity=0.282 Sum_probs=79.3
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCC--CCCEEEEEeC--CCcCeeec
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG--SFPTILFFPK--HSSKPIKY 445 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~--~~PTi~~f~~--g~~~~~~y 445 (463)
.++++++.||++||++|+.+.|.++++|+++++ ++.|+.||++++ ++++ +.|+|. ++|++++|+. |+ .+.+
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~~-~~~~-~~~~i~~~~~P~~~~~~~~~~~--k~~~ 85 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKG-KLLFVVVDADDF-GRHL-EYFGLKEEDLPVIAIINLSDGK--KYLM 85 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHhh-HHHH-HHcCCChhhCCEEEEEeccccc--ccCC
Confidence 478999999999999999999999999999998 799999999998 8999 999999 9999999998 54 4556
Q ss_pred CCCCCCHHHHHHHHHHh
Q 012452 446 PSERRDVDSLMAFVDAL 462 (463)
Q Consensus 446 ~gg~~~~~~L~~fI~~l 462 (463)
.++..+.++|.+||+++
T Consensus 86 ~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 86 PEEELTAESLEEFVEDF 102 (103)
T ss_pred CccccCHHHHHHHHHhh
Confidence 65556999999999875
No 80
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.47 E-value=2.9e-13 Score=116.03 Aligned_cols=97 Identities=15% Similarity=0.276 Sum_probs=76.6
Q ss_pred ChhhHHHHHhhcCCCCcEEEEEec-------CCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC------cHHHHHHc
Q 012452 357 NRTGMENLARLDHRQEPWLVVLYA-------PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------QKEYAKQK 423 (463)
Q Consensus 357 t~~~f~~~i~~~~~~k~vlV~FyA-------~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~------~~~l~~~~ 423 (463)
+.++|.+.+. ...+++++|+||| +||++|+.+.|.++++++++++ ++.|++||+++. +.++. .+
T Consensus 8 ~~~~f~~~i~-~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~-~~ 84 (119)
T cd02952 8 GYEEFLKLLK-SHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFR-TD 84 (119)
T ss_pred CHHHHHHHHH-hcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhH-hc
Confidence 3466777665 2247899999999 9999999999999999999986 699999999863 15888 89
Q ss_pred CCCC-CCCEEEEEeCCCcCeeecCCCCCCHHHHHHHH
Q 012452 424 LQLG-SFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 424 ~~I~-~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI 459 (463)
|+|. ++||+++|++|+. .+... =.+.+.+..|+
T Consensus 85 ~~I~~~iPT~~~~~~~~~-l~~~~--c~~~~~~~~~~ 118 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQR-LVEDE--CLQADLVEMFF 118 (119)
T ss_pred cCcccCCCEEEEEcCCce-ecchh--hcCHHHHHHhh
Confidence 9998 9999999987763 33333 25666666664
No 81
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.8e-13 Score=127.83 Aligned_cols=102 Identities=19% Similarity=0.303 Sum_probs=85.5
Q ss_pred eeec-ChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCE
Q 012452 353 LVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 431 (463)
Q Consensus 353 V~~l-t~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PT 431 (463)
|+.+ ++.+|..-+. ....+.++|+|+|.||+||+.+.|.|+.|+.+|++ .+|++||+|+. ...+ ..++|...||
T Consensus 3 Vi~v~~d~df~~~ls-~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd~c-~~ta-a~~gV~amPT 77 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELS-AAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVDEC-RGTA-ATNGVNAMPT 77 (288)
T ss_pred eEEecCcHHHHHhhh-ccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHHHh-hchh-hhcCcccCce
Confidence 4445 3567877665 33467999999999999999999999999999977 99999999999 8888 8999999999
Q ss_pred EEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 432 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 432 i~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
+++|.+|.+ ...+.| .|+..|.+.|.++
T Consensus 78 Fiff~ng~k-id~~qG--Ad~~gLe~kv~~~ 105 (288)
T KOG0908|consen 78 FIFFRNGVK-IDQIQG--ADASGLEEKVAKY 105 (288)
T ss_pred EEEEecCeE-eeeecC--CCHHHHHHHHHHH
Confidence 999999986 555666 6777787777653
No 82
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.47 E-value=3.3e-13 Score=141.93 Aligned_cols=106 Identities=25% Similarity=0.562 Sum_probs=93.6
Q ss_pred CCCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC-C-CeEEEEEEcCCCcHHHHHHcCCCC
Q 012452 350 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-N-GVKVGKFRADGDQKEYAKQKLQLG 427 (463)
Q Consensus 350 ~~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~-~-~v~f~~VD~d~~~~~l~~~~~~I~ 427 (463)
...|..|+.++|++++. +.++++||+|||+||++|+.+.|.|+++++.+++ . ++.|+++|++.+ ++. . ++|.
T Consensus 345 ~~~v~~l~~~~f~~~v~--~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n--~~~-~-~~i~ 418 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVL--DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN--DVP-P-FEVE 418 (462)
T ss_pred CCccEEeeCcCHHHHhc--cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC--ccC-C-CCcc
Confidence 35789999999999874 4689999999999999999999999999999987 3 799999999987 566 5 9999
Q ss_pred CCCEEEEEeCCCc-CeeecCCCCCCHHHHHHHHHHh
Q 012452 428 SFPTILFFPKHSS-KPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 428 ~~PTi~~f~~g~~-~~~~y~gg~~~~~~L~~fI~~l 462 (463)
++||+++|++|+. .+..|.| .++.++|.+||++.
T Consensus 419 ~~Pt~~~~~~~~~~~~~~~~g-~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 419 GFPTIKFVPAGKKSEPVPYDG-DRTLEDFSKFIAKH 453 (462)
T ss_pred ccCEEEEEeCCCCcCceEecC-cCCHHHHHHHHHhc
Confidence 9999999999886 3678887 69999999999864
No 83
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=99.40 E-value=2.1e-12 Score=120.11 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=103.8
Q ss_pred cEEEEechhHHHHHH-HHHHHc----CCCeEEEEEeCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 012452 113 DIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 185 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~----~~~i~vi~~DTg~~f--peT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~ 185 (463)
+|+|++|||+||+++ +++.+. +.++.++++|+|... ++..+.++++++.+|++++++.-+..... ...+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~---~~~~- 76 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALA---KGKK- 76 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhc---cccC-
Confidence 489999999998766 776653 557999999999864 66789999999999999877643321111 0111
Q ss_pred CCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCceecC-----CCCcCCcCCCCCeEEEEeCcc
Q 012452 186 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVD-----PVFEGLEGGVGSLVKWNPVAN 258 (463)
Q Consensus 186 ~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~~d-----~~~~~~~~~~~~~~k~~PI~d 258 (463)
......|...+..-+.++.+ +.+.+++|.+.++.. .+.-+..+... ..........+++..++||.+
T Consensus 77 -----~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~-e~~l~~~~~g~~~~~l~~~~~~~~~~~~~~iirPL~~ 150 (189)
T TIGR02432 77 -----KNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQA-ETILLRLLRGSGLRGLSGMKPIRILGNGGQIIRPLLG 150 (189)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHH-HHHHHHHHcCCCcccccCCccccccCCCCEEECCCCC
Confidence 11223466666666666665 556899999999964 32111100000 000000000115678999999
Q ss_pred CcHHHHHHHHHhCCCCccchh
Q 012452 259 VKGNDIWNFLRTMDVPINSLH 279 (463)
Q Consensus 259 Wt~~DVw~yi~~~~lp~npLy 279 (463)
|+.+|||.|.+++++|+..-+
T Consensus 151 ~~k~ei~~~~~~~~lp~~~~~ 171 (189)
T TIGR02432 151 ISKSEIEEYLKENGLPWFEDE 171 (189)
T ss_pred CCHHHHHHHHHHcCCCeeeCC
Confidence 999999999999999987665
No 84
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.38 E-value=3.4e-12 Score=101.73 Aligned_cols=80 Identities=15% Similarity=0.316 Sum_probs=69.9
Q ss_pred EEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHH
Q 012452 374 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVD 453 (463)
Q Consensus 374 vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~ 453 (463)
.+..||++||++|+.+.|.++++++.++. .+.++.||++++ ++++ ++|++.++||+++ +|+ ..+.| ..+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~vPt~~~--~g~---~~~~G-~~~~~ 72 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMEN-PQKA-MEYGIMAVPAIVI--NGD---VEFIG-APTKE 72 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccC-HHHH-HHcCCccCCEEEE--CCE---EEEec-CCCHH
Confidence 46789999999999999999999999976 699999999998 9999 8999999999986 554 35666 67899
Q ss_pred HHHHHHHHh
Q 012452 454 SLMAFVDAL 462 (463)
Q Consensus 454 ~L~~fI~~l 462 (463)
+|.++|+++
T Consensus 73 ~l~~~l~~~ 81 (82)
T TIGR00411 73 ELVEAIKKR 81 (82)
T ss_pred HHHHHHHhh
Confidence 999999864
No 85
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.36 E-value=1.1e-11 Score=114.56 Aligned_cols=160 Identities=17% Similarity=0.205 Sum_probs=100.8
Q ss_pred cEEEEechhHHHHHH-HHHHHc------CCCeEEEEEeCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhc
Q 012452 113 DIAIAFSGAEDVALI-EYAHLT------GRPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSK 183 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~------~~~i~vi~~DTg~~f--peT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~ 183 (463)
+|+|++|||+||+++ +++.+. +.++.++|+|+|... ++..++++++++++|++++++..... + ......
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-~~~~~~ 78 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEE-Y-TDDIEV 78 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhh-c-chhhhh
Confidence 489999999999766 777664 336889999999764 78899999999999999987754321 1 000000
Q ss_pred CCCCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCce------ecCCCCcCCcCCCCCeEEEEe
Q 012452 184 GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVV------QVDPVFEGLEGGVGSLVKWNP 255 (463)
Q Consensus 184 g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~------~~d~~~~~~~~~~~~~~k~~P 255 (463)
... ........|...+...+.+..+ +.+++++|...+|-. ....+... ...+... .....+++..++|
T Consensus 79 ~~~--~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~-et~l~~~~~g~~~~~~~~~~~-~~~~~~~~~iirP 154 (185)
T cd01993 79 KKR--GGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEA-ETLLMNLLRGGILRLMRPGPI-LYLDEGDVTRIRP 154 (185)
T ss_pred hcc--CCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHH-HHHHHHHHhcCHHHHcCCCCc-cccCCCCceEEee
Confidence 000 0011122355555556666655 456999999999864 21100000 0000000 0001134667899
Q ss_pred CccCcHHHHHHHHHhCCCCccch
Q 012452 256 VANVKGNDIWNFLRTMDVPINSL 278 (463)
Q Consensus 256 I~dWt~~DVw~yi~~~~lp~npL 278 (463)
|.+|+..||+.|.+.++||+.+-
T Consensus 155 L~~~~k~eI~~~~~~~~l~~~~d 177 (185)
T cd01993 155 LVYVREKEIVLYAELNGLPFVEE 177 (185)
T ss_pred cccCCHHHHHHHHHHcCCCcccC
Confidence 99999999999999999988543
No 86
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.33 E-value=3.8e-12 Score=109.31 Aligned_cols=70 Identities=16% Similarity=0.393 Sum_probs=54.6
Q ss_pred CCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCC--CCEEEEEe-CCCc
Q 012452 369 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS--FPTILFFP-KHSS 440 (463)
Q Consensus 369 ~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~--~PTi~~f~-~g~~ 440 (463)
.+++++||+|||+||++|+.|.|.+.+....... ...|+.||++.+..... ..|++.+ +||++||. +|+.
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~~~~~-~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLEDDEEPKD-EEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecCCCCchh-hhcccCCCccceEEEECCCCCC
Confidence 3789999999999999999999999998776543 34566666665522455 6888876 99999996 6664
No 87
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.31 E-value=5.4e-12 Score=119.96 Aligned_cols=89 Identities=21% Similarity=0.332 Sum_probs=72.9
Q ss_pred CCcEEEEEec---CCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCC
Q 012452 371 QEPWLVVLYA---PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPS 447 (463)
Q Consensus 371 ~k~vlV~FyA---~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~g 447 (463)
+...++.|++ +||++|+.+.|.++++++.+.+-.+.++.+|.+.+ ++++ ++|+|.++||+++|++|+.....+.|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~-~~l~-~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED-KEEA-EKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc-HHHH-HHcCCCccCEEEEEeCCeeeEEEEee
Confidence 4555777888 99999999999999999999542355677777788 9999 99999999999999999853246766
Q ss_pred CCCCHHHHHHHHHHh
Q 012452 448 ERRDVDSLMAFVDAL 462 (463)
Q Consensus 448 g~~~~~~L~~fI~~l 462 (463)
..+.++|.+||+.+
T Consensus 97 -~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 97 -IPAGYEFAALIEDI 110 (215)
T ss_pred -cCCHHHHHHHHHHH
Confidence 67888899998764
No 88
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1e-11 Score=128.19 Aligned_cols=101 Identities=34% Similarity=0.691 Sum_probs=87.4
Q ss_pred eecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEE
Q 012452 354 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 433 (463)
Q Consensus 354 ~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~ 433 (463)
..++..+|...+. ..+.+++|.||+|||++|+.+.|.|.+++..+++ .+.++.|||+.+ .++| ++|+|+++||+.
T Consensus 32 ~~~~~~~~~~~~~--~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~-~~~~-~~y~i~gfPtl~ 106 (383)
T KOG0191|consen 32 SELTLDSFFDFLL--KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEH-KDLC-EKYGIQGFPTLK 106 (383)
T ss_pred hhhhccccHHHhh--ccCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhh-HHHH-HhcCCccCcEEE
Confidence 3333444444432 3789999999999999999999999999999998 899999999999 9999 999999999999
Q ss_pred EEeCCCcCeeecCCCCCCHHHHHHHHHH
Q 012452 434 FFPKHSSKPIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 434 ~f~~g~~~~~~y~gg~~~~~~L~~fI~~ 461 (463)
+|..| ..++.|.+ ..+.+.+..|+..
T Consensus 107 ~f~~~-~~~~~~~~-~~~~~~~~~~~~~ 132 (383)
T KOG0191|consen 107 VFRPG-KKPIDYSG-PRNAESLAEFLIK 132 (383)
T ss_pred EEcCC-CceeeccC-cccHHHHHHHHHH
Confidence 99999 44899988 7999999998864
No 89
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.2e-11 Score=127.68 Aligned_cols=106 Identities=31% Similarity=0.656 Sum_probs=94.5
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC-CCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGSFP 430 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~-~~v~f~~VD~d~~~~~l~~~~~~I~~~P 430 (463)
.|..++..+|+..+. +.+..++|.||+|||++|+.+.|.|++++..++. ..+.++.+|++.. ..++ .+++|.++|
T Consensus 145 ~v~~l~~~~~~~~~~--~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~-~~~~-~~~~v~~~P 220 (383)
T KOG0191|consen 145 EVFELTKDNFDETVK--DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVH-KSLA-SRLEVRGYP 220 (383)
T ss_pred ceEEccccchhhhhh--ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchH-HHHh-hhhcccCCc
Confidence 499999999998775 5688999999999999999999999999999974 5899999999977 8999 999999999
Q ss_pred EEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 431 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 431 Ti~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
|+++|++|.+ ...+..+.++.+.|+.|++..
T Consensus 221 t~~~f~~~~~-~~~~~~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 221 TLKLFPPGEE-DIYYYSGLRDSDSIVSFVEKK 251 (383)
T ss_pred eEEEecCCCc-ccccccccccHHHHHHHHHhh
Confidence 9999999986 466666689999999999864
No 90
>PTZ00062 glutaredoxin; Provisional
Probab=99.28 E-value=2.4e-11 Score=113.85 Aligned_cols=89 Identities=6% Similarity=0.087 Sum_probs=73.7
Q ss_pred ChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEe
Q 012452 357 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 436 (463)
Q Consensus 357 t~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~ 436 (463)
+.++|+++++ +..+.++++|+|+||++|+.|.|.+.+|+++|++ +.|+.||.+ |+|.++||++||+
T Consensus 5 ~~ee~~~~i~--~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d----------~~V~~vPtfv~~~ 70 (204)
T PTZ00062 5 KKEEKDKLIE--SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA----------DANNEYGVFEFYQ 70 (204)
T ss_pred CHHHHHHHHh--cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc----------cCcccceEEEEEE
Confidence 4577888775 2237899999999999999999999999999976 999999966 7899999999999
Q ss_pred CCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 437 KHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 437 ~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
+|+. .-.+.| .++.+|..+|+++
T Consensus 71 ~g~~-i~r~~G--~~~~~~~~~~~~~ 93 (204)
T PTZ00062 71 NSQL-INSLEG--CNTSTLVSFIRGW 93 (204)
T ss_pred CCEE-EeeeeC--CCHHHHHHHHHHH
Confidence 9994 334444 6788888888754
No 91
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.27 E-value=5e-11 Score=108.82 Aligned_cols=107 Identities=16% Similarity=0.302 Sum_probs=83.4
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------- 415 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~---------------- 415 (463)
.+..++++.+.-... .+++++|+||++||++|+...+.+.++++++.+.++.++.|+++..
T Consensus 45 ~~~~~~g~~~~l~~~---~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~ 121 (173)
T PRK03147 45 VLTDLEGKKIELKDL---KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFP 121 (173)
T ss_pred EeecCCCCEEeHHHc---CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCce
Confidence 344555554432211 5789999999999999999999999999999875689999987643
Q ss_pred -----cHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHhC
Q 012452 416 -----QKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 463 (463)
Q Consensus 416 -----~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l~ 463 (463)
+.+++ +.|+|..+|+++++++++.....+.| ..+.+++.+++++++
T Consensus 122 ~~~d~~~~~~-~~~~v~~~P~~~lid~~g~i~~~~~g-~~~~~~l~~~l~~~~ 172 (173)
T PRK03147 122 VAIDKGRQVI-DAYGVGPLPTTFLIDKDGKVVKVITG-EMTEEQLEEYLEKIK 172 (173)
T ss_pred EEECCcchHH-HHcCCCCcCeEEEECCCCcEEEEEeC-CCCHHHHHHHHHHhc
Confidence 15677 89999999999999766554445555 689999999999875
No 92
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.25 E-value=4.3e-11 Score=129.22 Aligned_cols=103 Identities=18% Similarity=0.338 Sum_probs=81.9
Q ss_pred ChhhHHHHHhh-cCCCCcEEEEEecCCChhHHHhHHHH---HHHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCCCCCC
Q 012452 357 NRTGMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSF 429 (463)
Q Consensus 357 t~~~f~~~i~~-~~~~k~vlV~FyA~wC~~C~~~~p~l---~~la~~~~~~~v~f~~VD~d~~~---~~l~~~~~~I~~~ 429 (463)
+.+++++.++. ..++|+|+|+|||+||++|+.+++.. .++.+++++ +.++++|+++++ .+++ ++|+|.++
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~--~~~v~vDvt~~~~~~~~l~-~~~~v~g~ 535 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD--TVLLQADVTANNAEDVALL-KHYNVLGL 535 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC--CEEEEEECCCCChhhHHHH-HHcCCCCC
Confidence 45777776653 23579999999999999999999875 678888865 899999998642 6788 89999999
Q ss_pred CEEEEEe-CCCcC-eeecCCCCCCHHHHHHHHHHhC
Q 012452 430 PTILFFP-KHSSK-PIKYPSERRDVDSLMAFVDALR 463 (463)
Q Consensus 430 PTi~~f~-~g~~~-~~~y~gg~~~~~~L~~fI~~l~ 463 (463)
||+++|+ +|+.. ...+.| ..+.+++.+++++++
T Consensus 536 Pt~~~~~~~G~~i~~~r~~G-~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 536 PTILFFDAQGQEIPDARVTG-FMDAAAFAAHLRQLQ 570 (571)
T ss_pred CEEEEECCCCCCcccccccC-CCCHHHHHHHHHHhc
Confidence 9999997 55532 234555 789999999999864
No 93
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.23 E-value=5.2e-11 Score=103.07 Aligned_cols=100 Identities=16% Similarity=0.294 Sum_probs=70.8
Q ss_pred ChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHH-H--HHHHHHhcCCCeEEEEEEcCCCcHHHHHH--------cCC
Q 012452 357 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGS-Y--VELADKLAGNGVKVGKFRADGDQKEYAKQ--------KLQ 425 (463)
Q Consensus 357 t~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~-l--~~la~~~~~~~v~f~~VD~d~~~~~l~~~--------~~~ 425 (463)
+++.++...+ ++|++||+|||+||++|+.|.+. | .++++.+.. ++.++++|.++. +++. + .|+
T Consensus 4 ~~eal~~Ak~---~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~-~~~~-~~~~~~~~~~~~ 77 (124)
T cd02955 4 GEEAFEKARR---EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREER-PDVD-KIYMNAAQAMTG 77 (124)
T ss_pred CHHHHHHHHH---cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcC-cHHH-HHHHHHHHHhcC
Confidence 4556666655 89999999999999999999874 4 367777755 699999999987 6665 3 368
Q ss_pred CCCCCEEEEEeCCCcCee--ecCCC--CCCHHHHHHHHHHh
Q 012452 426 LGSFPTILFFPKHSSKPI--KYPSE--RRDVDSLMAFVDAL 462 (463)
Q Consensus 426 I~~~PTi~~f~~g~~~~~--~y~gg--~~~~~~L~~fI~~l 462 (463)
+.++||++|+...++... .|..+ ..+...+.++++++
T Consensus 78 ~~G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 78 QGGWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred CCCCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 999999999966543211 22111 13344566666654
No 94
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.21 E-value=6.9e-11 Score=124.67 Aligned_cols=89 Identities=17% Similarity=0.324 Sum_probs=71.6
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEE----------------------------cCCCcHHHHH
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR----------------------------ADGDQKEYAK 421 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD----------------------------~d~~~~~l~~ 421 (463)
++++|||+|||+||++|+.++|.|++++++++.+++.|+.|. +|.+ .+++
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~-~~la- 132 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG-GTLA- 132 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc-HHHH-
Confidence 689999999999999999999999999999985457766553 3344 6788
Q ss_pred HcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHH
Q 012452 422 QKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 422 ~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~ 461 (463)
+.|+|.++||++++.+++++...+.| ..+.++|.++|+.
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G-~~~~eeL~a~Ie~ 171 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKG-SISEAQALALIRN 171 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeC-CCCHHHHHHHHHH
Confidence 89999999999887544433445555 7899999999984
No 95
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.20 E-value=8.6e-11 Score=111.71 Aligned_cols=96 Identities=15% Similarity=0.194 Sum_probs=75.5
Q ss_pred ecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEE
Q 012452 355 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 434 (463)
Q Consensus 355 ~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~ 434 (463)
.|+.+..+.+.. ..+...++.||++||++|+.+.+.+++++..+. ++.+..+|.+.+ ++++ .+|+|.++||+++
T Consensus 119 ~L~~~~~~~l~~--~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~~~-~~~~-~~~~V~~vPtl~i 192 (215)
T TIGR02187 119 GLSEKTVELLQS--LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEANEN-PDLA-EKYGVMSVPKIVI 192 (215)
T ss_pred CCCHHHHHHHHh--cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCCCC-HHHH-HHhCCccCCEEEE
Confidence 344444444433 133445555999999999999999999998853 599999999999 9999 9999999999999
Q ss_pred EeCCCcCeeecCCCCCCHHHHHHHHHH
Q 012452 435 FPKHSSKPIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 435 f~~g~~~~~~y~gg~~~~~~L~~fI~~ 461 (463)
+++|. . +.| ..+.++|.+||+.
T Consensus 193 ~~~~~--~--~~G-~~~~~~l~~~l~~ 214 (215)
T TIGR02187 193 NKGVE--E--FVG-AYPEEQFLEYILS 214 (215)
T ss_pred ecCCE--E--EEC-CCCHHHHHHHHHh
Confidence 97765 2 555 6788999999874
No 96
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.19 E-value=7.8e-11 Score=93.18 Aligned_cols=74 Identities=12% Similarity=0.199 Sum_probs=58.8
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHH
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 454 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~ 454 (463)
.|.||++||++|+.+.|.++++++++.. .+.|++|| + .+.+ .+|++.++||+++ +|+. + +.|...+.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~---~-~~~a-~~~~v~~vPti~i--~G~~--~-~~G~~~~~~~ 70 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI-DAEFEKVT---D-MNEI-LEAGVTATPGVAV--DGEL--V-IMGKIPSKEE 70 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC-CeEEEEeC---C-HHHH-HHcCCCcCCEEEE--CCEE--E-EEeccCCHHH
Confidence 3789999999999999999999999976 68887777 2 4556 7899999999998 7763 3 5442245678
Q ss_pred HHHHH
Q 012452 455 LMAFV 459 (463)
Q Consensus 455 L~~fI 459 (463)
|.+++
T Consensus 71 l~~~l 75 (76)
T TIGR00412 71 IKEIL 75 (76)
T ss_pred HHHHh
Confidence 88776
No 97
>PHA02125 thioredoxin-like protein
Probab=99.19 E-value=1.1e-10 Score=92.08 Aligned_cols=72 Identities=19% Similarity=0.374 Sum_probs=56.2
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHH
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 454 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~ 454 (463)
+++|||+||++|+.+.|.|+++. +.+++||++.+ .+++ ++|+|.++||++ +|+. ...+.|-..+..+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~-~~l~-~~~~v~~~PT~~---~g~~-~~~~~G~~~~~~~ 68 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEG-VELT-AKHHIRSLPTLV---NTST-LDRFTGVPRNVAE 68 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCC-HHHH-HHcCCceeCeEE---CCEE-EEEEeCCCCcHHH
Confidence 78999999999999999997652 56899999998 9999 999999999997 4442 2345553455566
Q ss_pred HHHHH
Q 012452 455 LMAFV 459 (463)
Q Consensus 455 L~~fI 459 (463)
|.+-+
T Consensus 69 l~~~~ 73 (75)
T PHA02125 69 LKEKL 73 (75)
T ss_pred HHHHh
Confidence 66543
No 98
>KOG2644 consensus 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.18 E-value=1.6e-11 Score=117.65 Aligned_cols=151 Identities=19% Similarity=0.321 Sum_probs=109.3
Q ss_pred cEEEEechhHHHHHH-HHHHHc-----------C-CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEE-cCChHHHHH
Q 012452 113 DIAIAFSGAEDVALI-EYAHLT-----------G-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM-FPDAVEVQA 178 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~-----------~-~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~-~p~~~~~~~ 178 (463)
.++.+|.||||++++ +++.+. + -.++.+|+|.+..||+..+|+..-...|.+.+..+ .+. ...
T Consensus 84 ~~a~SFnggkdc~vll~ll~~~l~~~~~~~~~~p~~~i~~~~~~~~~~fp~~~~fv~~~~~~y~~~l~~~~~~~--~lk- 160 (282)
T KOG2644|consen 84 EMALSFNGGKDCTVLLLLLMRYLRDEYAEKLDQPSTAIPAVYIDVEDSFPELEDFVSVCVFKYRPQLSRLSGAG--RLK- 160 (282)
T ss_pred HHHHhhCCCCChHHHHHHHHHHhcchhhhhccCCCccccceeecCCCCcccccchHHHHHHhhccchhhccCcc--hHH-
Confidence 367888899998765 555441 1 14789999999999999999999999998777533 121 000
Q ss_pred HHHhcCCCCCCccchhhhhhchhhhHHHHHHccCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCcc
Q 012452 179 LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN 258 (463)
Q Consensus 179 ~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~d 258 (463)
+ --+...|+.| ..++++.|+|..+-. - ..+..+++ ++.+|+++.+..|+++
T Consensus 161 ----~-----------~~~~~~~~~~------~~k~i~vg~r~~dp~-g-~~~~~~~~------td~~wp~~~r~~pll~ 211 (282)
T KOG2644|consen 161 ----K-----------ALSLFKKVDP------ESKAILVGIRNTDPV-G-EALAPFER------TDSLWPQFMRLLPLLE 211 (282)
T ss_pred ----H-----------HHHHhhhhhh------hhhhHhhhhhhCCCc-c-ceecceee------ccCCchhhhhhccccc
Confidence 0 0111122222 345778899988864 3 22222222 2346789999999999
Q ss_pred CcHHHHHHHHHhCCCCccchhccCCcccCcccCCccC
Q 012452 259 VKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV 295 (463)
Q Consensus 259 Wt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~Ct~~~ 295 (463)
|+..|||.|++..++|||.||++||+|+|-.--|.|.
T Consensus 212 ws~t~vw~~l~~~~~p~c~ly~qg~TslG~~~~t~pn 248 (282)
T KOG2644|consen 212 WSYTDVWDLLREGNLPYCGLYDQGYTSLGGRSNTSPN 248 (282)
T ss_pred chHHHHHHHHhcCCCceeeeecccccccccccCCCCC
Confidence 9999999999999999999999999999998888763
No 99
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.17 E-value=1.4e-10 Score=113.81 Aligned_cols=88 Identities=15% Similarity=0.254 Sum_probs=70.1
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC----------cHHHHHHcCCCCCCCEEEEEeC-C
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPK-H 438 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~----------~~~l~~~~~~I~~~PTi~~f~~-g 438 (463)
.++++||+|||+||++|+.+.|.++++++++. +.|+.|++|.. +..++ ++|+|.++||++++++ |
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~~~~~~fp~~~~d~~la-~~~gV~~vPtl~Lv~~~~ 240 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDGGPLPGFPNARPDAGQA-QQLKIRTVPAVFLADPDP 240 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCCCccccCCcccCCHHHH-HHcCCCcCCeEEEEECCC
Confidence 47899999999999999999999999999983 67777777652 15688 8999999999999987 4
Q ss_pred CcCeeecCCCCCCHHHHHHHHHHh
Q 012452 439 SSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 439 ~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
+. ......|..+.++|.+.|..+
T Consensus 241 ~~-v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 241 NQ-FTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred CE-EEEEEeCCCCHHHHHHHHHHH
Confidence 53 222222378999998888653
No 100
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.17 E-value=1.8e-10 Score=103.42 Aligned_cols=89 Identities=17% Similarity=0.301 Sum_probs=66.0
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc-----------HHHHHHcC---CCCCCCEEEEE
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-----------KEYAKQKL---QLGSFPTILFF 435 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~-----------~~l~~~~~---~I~~~PTi~~f 435 (463)
.++..+|+|||+||++|++++|.+++++++++ +.|+.|+.|... .+.....| ++.++||++++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~---~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG---LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC---CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 35667999999999999999999999999983 566666665420 23331345 78999999999
Q ss_pred eCCCcCee-ecCCCCCCHHHHHHHHHHh
Q 012452 436 PKHSSKPI-KYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 436 ~~g~~~~~-~y~gg~~~~~~L~~fI~~l 462 (463)
++.+.... .+.| ..+.++|.+.|+++
T Consensus 126 D~~G~~i~~~~~G-~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKAYPVLQG-AVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEEEEEeec-ccCHHHHHHHHHHh
Confidence 76543223 3455 78999999988865
No 101
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=3.2e-11 Score=124.74 Aligned_cols=87 Identities=20% Similarity=0.495 Sum_probs=76.3
Q ss_pred CCCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC--CCeEEEEEEcCCC-cHHHHHHcCCC
Q 012452 350 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGD-QKEYAKQKLQL 426 (463)
Q Consensus 350 ~~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~--~~v~f~~VD~d~~-~~~l~~~~~~I 426 (463)
+++|+.|+.++|+..+. .+.+..+|.||++|||+|+.+.|.|+++|+.+.. .-+.++.|||-.. |..+| ++|+|
T Consensus 38 ~D~ii~Ld~~tf~~~v~--~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC-Ref~V 114 (606)
T KOG1731|consen 38 DDPIIELDVDTFNAAVF--GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC-REFSV 114 (606)
T ss_pred CCCeEEeehhhhHHHhc--ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH-hhcCC
Confidence 37899999999999886 3457899999999999999999999999999876 4678999999542 38999 99999
Q ss_pred CCCCEEEEEeCCC
Q 012452 427 GSFPTILFFPKHS 439 (463)
Q Consensus 427 ~~~PTi~~f~~g~ 439 (463)
.+|||+.+|+.+.
T Consensus 115 ~~~Ptlryf~~~~ 127 (606)
T KOG1731|consen 115 SGYPTLRYFPPDS 127 (606)
T ss_pred CCCceeeecCCcc
Confidence 9999999997763
No 102
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=99.17 E-value=4e-10 Score=110.15 Aligned_cols=160 Identities=20% Similarity=0.351 Sum_probs=101.4
Q ss_pred HHHHHHHHHc-----CCcEEEEechhHHHHHH-HHHHHc------CCCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEE
Q 012452 101 EIMDRALEKF-----GNDIAIAFSGAEDVALI-EYAHLT------GRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIE 167 (463)
Q Consensus 101 eil~~~~~~~-----~~~i~vafSGGKDS~vl-~L~~~~------~~~i~vi~~DTg~~-fpeT~~~~~~~~~~~gl~i~ 167 (463)
..+..++.+| +++|+|++|||+||++| |++... +.++.++++|.|.. +.+ ++++++++++|++++
T Consensus 14 ~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~--~~~~~~~~~lgI~~~ 91 (258)
T PRK10696 14 RQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPE--HVLPEYLESLGVPYH 91 (258)
T ss_pred HHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCH--HHHHHHHHHhCCCEE
Confidence 3345555655 35799999999999766 777552 23578889999853 433 367899999999998
Q ss_pred EEcCChHHHHHHHHhcCCCCCCccchhhh--hhchhhhHHHHHHc--cCceEEEeeeccCCcccc-------c-CCCcee
Q 012452 168 YMFPDAVEVQALVRSKGLFSFYEDGHQEC--CRVRKVRPLRRALK--GLRAWITGQRKDQSPGTR-------S-EIPVVQ 235 (463)
Q Consensus 168 ~~~p~~~~~~~~~~~~g~~~~~~~~~~~C--c~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~R-------a-~~~~~~ 235 (463)
++..+..... ... . + .+...| |...+..-+.+... +.+.+++|...|+-. .. . .+..+
T Consensus 92 v~~~~~~~~~---~~~-~---~-~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~-Et~l~nl~rg~~l~~m- 161 (258)
T PRK10696 92 IEEQDTYSIV---KEK-I---P-EGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDIL-ETLFLNMFYGGKLKAM- 161 (258)
T ss_pred EEEecchhhh---hhh-h---c-cCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHH-HHHHHHHHhCCccccc-
Confidence 7754322111 000 0 0 011234 55555566666555 557899999998854 21 1 11111
Q ss_pred cCCCCcCCcCCCCCeEEEEeCccCcHHHHHHHHHhCCCCcc
Q 012452 236 VDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPIN 276 (463)
Q Consensus 236 ~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~n 276 (463)
.+.. ....+++..++||++++.+||+.|.+.+++|+.
T Consensus 162 -~~~~---~~~~~~i~iiRPLl~~~k~eI~~y~~~~~lp~~ 198 (258)
T PRK10696 162 -PPKL---LSDDGKHIVIRPLAYVAEKDIIKFAEAKEFPII 198 (258)
T ss_pred -CCee---ecCCCceeEEecCccCCHHHHHHHHHHcCCCEe
Confidence 1100 001134678999999999999999999999874
No 103
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.13 E-value=1.1e-09 Score=106.63 Aligned_cols=151 Identities=18% Similarity=0.275 Sum_probs=101.4
Q ss_pred HHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH
Q 012452 101 EIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL 179 (463)
Q Consensus 101 eil~~~~~~~~~~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~ 179 (463)
+.|+..++.++. ++|+||||.||+++ +++.+.+.++..+++|.+...++-.+.++++++++|++++++.-+. +...
T Consensus 3 ~~l~~~l~~~~~-vlVa~SGGvDSs~ll~la~~~g~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~--~~~~ 79 (252)
T TIGR00268 3 ENLRNFLKEFKK-VLIAYSGGVDSSLLAAVCSDAGTEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKIDK--MINP 79 (252)
T ss_pred HHHHHHHHhcCC-EEEEecCcHHHHHHHHHHHHhCCCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHH--HHHH
Confidence 556777777665 99999999998766 8887777789999999987777888999999999999988774321 1111
Q ss_pred HHhcCCCCCCccchhhhhhchhhh---HHHHHHc--cCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEE
Q 012452 180 VRSKGLFSFYEDGHQECCRVRKVR---PLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWN 254 (463)
Q Consensus 180 ~~~~g~~~~~~~~~~~Cc~~~Kv~---Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~ 254 (463)
...+ .... |..+|.. -+.+..+ +...+++|...+|-...|..+..... .+ . .+
T Consensus 80 ~~~n--------~~~~-c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~rpg~~a~~~----------~~-~--~~ 137 (252)
T TIGR00268 80 FRAN--------VEER-CYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHRPGYRAVKE----------FN-G--VS 137 (252)
T ss_pred HHhC--------CCcc-cchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccccHHHHHHHH----------cC-C--CC
Confidence 1111 1112 3333332 2223222 55689999988885323322221110 01 1 38
Q ss_pred eCcc--CcHHHHHHHHHhCCCCcc
Q 012452 255 PVAN--VKGNDIWNFLRTMDVPIN 276 (463)
Q Consensus 255 PI~d--Wt~~DVw~yi~~~~lp~n 276 (463)
|+.+ ++.+||..|.++.|+|+.
T Consensus 138 PL~~~~l~K~eIr~la~~~gl~~~ 161 (252)
T TIGR00268 138 PWAEFGITKKEIREIAKSLGISFP 161 (252)
T ss_pred cchhcCCCHHHHHHHHHHcCCCcc
Confidence 9976 799999999999999854
No 104
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.13 E-value=8.1e-11 Score=99.58 Aligned_cols=87 Identities=24% Similarity=0.462 Sum_probs=62.6
Q ss_pred CCCCcEEEEEecCCChhHHHhHHHHHHHH---HHhcCCCeEEEEEEcCCCc-------------------HHHHHHcCCC
Q 012452 369 HRQEPWLVVLYAPWCQFCQAMEGSYVELA---DKLAGNGVKVGKFRADGDQ-------------------KEYAKQKLQL 426 (463)
Q Consensus 369 ~~~k~vlV~FyA~wC~~C~~~~p~l~~la---~~~~~~~v~f~~VD~d~~~-------------------~~l~~~~~~I 426 (463)
..+++++|+|+++||++|+.+.+.+.... ..+.+ ++.++.++++... .++. ++|+|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELA-QRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHH-HHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcccccccccccccchhhhHHHHHHH-HHcCC
Confidence 46899999999999999999999988643 44444 6888888887541 3578 89999
Q ss_pred CCCCEEEEEe-CCCcCeeecCCCCCCHHHHHHHH
Q 012452 427 GSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 427 ~~~PTi~~f~-~g~~~~~~y~gg~~~~~~L~~fI 459 (463)
.++||+++++ +|+. ...+.| ..+.++|.++|
T Consensus 81 ~gtPt~~~~d~~G~~-v~~~~G-~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKI-VYRIPG-YLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCE-EEEEES-S--HHHHHHHH
T ss_pred CccCEEEEEcCCCCE-EEEecC-CCCHHHHHhhC
Confidence 9999999997 5552 445566 78999998875
No 105
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.10 E-value=4.3e-10 Score=99.96 Aligned_cols=75 Identities=12% Similarity=0.205 Sum_probs=59.8
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC-------CCeEEEEEEcCCCc------------------------HH
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-------NGVKVGKFRADGDQ------------------------KE 418 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~-------~~v~f~~VD~d~~~------------------------~~ 418 (463)
++++++|+|||+||++|+.++|.+.++.+++++ +++.++.|+.|.+. ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 579999999999999999999999998887754 25899999887541 14
Q ss_pred HHHHcCCCCCCCEEEEEeCCCcCeeecC
Q 012452 419 YAKQKLQLGSFPTILFFPKHSSKPIKYP 446 (463)
Q Consensus 419 l~~~~~~I~~~PTi~~f~~g~~~~~~y~ 446 (463)
+. +.|+|.++||+++++..++ .+...
T Consensus 104 l~-~~y~v~~iPt~vlId~~G~-Vv~~~ 129 (146)
T cd03008 104 LE-AQFSVEELPTVVVLKPDGD-VLAAN 129 (146)
T ss_pred HH-HHcCCCCCCEEEEECCCCc-EEeeC
Confidence 66 7889999999999975543 44443
No 106
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.09 E-value=5.9e-10 Score=97.20 Aligned_cols=69 Identities=19% Similarity=0.404 Sum_probs=57.6
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC--CCeEEEEEEcCCCc-----------------------HHHHHHcC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQ-----------------------KEYAKQKL 424 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~--~~v~f~~VD~d~~~-----------------------~~l~~~~~ 424 (463)
+++++||+||++||++|+.+.|.+.++.+++.+ .++.++.|++|.+. ..++ +.|
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 95 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLN-RTF 95 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHH-HHc
Confidence 578999999999999999999999999998875 26788888877541 2466 789
Q ss_pred CCCCCCEEEEEeCCC
Q 012452 425 QLGSFPTILFFPKHS 439 (463)
Q Consensus 425 ~I~~~PTi~~f~~g~ 439 (463)
+|.++||+++++.++
T Consensus 96 ~v~~~P~~~lid~~G 110 (131)
T cd03009 96 KIEGIPTLIILDADG 110 (131)
T ss_pred CCCCCCEEEEECCCC
Confidence 999999999997444
No 107
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.09 E-value=8.2e-10 Score=102.52 Aligned_cols=87 Identities=16% Similarity=0.301 Sum_probs=66.9
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc----------------------HHHHHHcCCCC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------------------KEYAKQKLQLG 427 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~----------------------~~l~~~~~~I~ 427 (463)
.+++++|+|||+||++|+.++|.+.++.++ ++.|+.|+.+++. ..+. ..|+|.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~gv~ 141 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLG-LDLGVY 141 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHH-HhcCCC
Confidence 588999999999999999999999988642 4888888875431 1244 578999
Q ss_pred CCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 428 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 428 ~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
++|+.+++++.+++...+.| ..+.++|.+.|+.+
T Consensus 142 ~~P~t~vid~~G~i~~~~~G-~~~~~~l~~~i~~~ 175 (185)
T PRK15412 142 GAPETFLIDGNGIIRYRHAG-DLNPRVWESEIKPL 175 (185)
T ss_pred cCCeEEEECCCceEEEEEec-CCCHHHHHHHHHHH
Confidence 99988888644444555555 78888888888764
No 108
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.08 E-value=7.4e-10 Score=90.87 Aligned_cols=68 Identities=24% Similarity=0.448 Sum_probs=56.7
Q ss_pred CCcEEEEEecCCChhHHHhHHHHHHHHHHhc-CCCeEEEEEEcCCCc------------------------HHHHHHcCC
Q 012452 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQ------------------------KEYAKQKLQ 425 (463)
Q Consensus 371 ~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~-~~~v~f~~VD~d~~~------------------------~~l~~~~~~ 425 (463)
+++++|+|||+||++|+.+.|.+.++.++++ +.++.|+.|..|.+. ..+. +.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELL-KKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHH-HHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHH-HHCC
Confidence 5899999999999999999999999999999 347999999987651 3466 7899
Q ss_pred CCCCCEEEEEeCCC
Q 012452 426 LGSFPTILFFPKHS 439 (463)
Q Consensus 426 I~~~PTi~~f~~g~ 439 (463)
|.++|+++++++.+
T Consensus 80 i~~iP~~~lld~~G 93 (95)
T PF13905_consen 80 INGIPTLVLLDPDG 93 (95)
T ss_dssp -TSSSEEEEEETTS
T ss_pred CCcCCEEEEECCCC
Confidence 99999999998765
No 109
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.08 E-value=5.9e-10 Score=97.56 Aligned_cols=69 Identities=17% Similarity=0.378 Sum_probs=57.5
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCC--CeEEEEEEcCCCc------------------------HHHHHHc
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQ------------------------KEYAKQK 423 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~--~v~f~~VD~d~~~------------------------~~l~~~~ 423 (463)
+++++||+||++||++|+.++|.++++++++++. ++.++.|++|.+. ..+. +.
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~ 94 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLE-KQ 94 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHH-HH
Confidence 5799999999999999999999999999998763 6888888877541 1345 67
Q ss_pred CCCCCCCEEEEEeCCC
Q 012452 424 LQLGSFPTILFFPKHS 439 (463)
Q Consensus 424 ~~I~~~PTi~~f~~g~ 439 (463)
|+|.++||++++++++
T Consensus 95 ~~v~~iPt~~lid~~G 110 (132)
T cd02964 95 FKVEGIPTLVVLKPDG 110 (132)
T ss_pred cCCCCCCEEEEECCCC
Confidence 9999999999997554
No 110
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.08 E-value=3.6e-10 Score=86.73 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=51.3
Q ss_pred EEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEE
Q 012452 374 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 434 (463)
Q Consensus 374 vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~ 434 (463)
-++.||++||++|+.+.+.++++++.+. ++.+..+|++++ ++++ ++|++.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~~~-~~l~-~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAAEF-PDLA-DEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcccC-HhHH-HHcCCcccCEEEE
Confidence 3678999999999999999999987654 499999999999 8999 8999999999865
No 111
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.06 E-value=8.7e-10 Score=95.53 Aligned_cols=80 Identities=18% Similarity=0.287 Sum_probs=60.6
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEc-----------------------CCCcHHHHHHcCCC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA-----------------------DGDQKEYAKQKLQL 426 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~-----------------------d~~~~~l~~~~~~I 426 (463)
.+++++|+||++||++|+.+.|.++++++++ ++.|+.|+. |.+ ..++ +.|++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~-~~~~v 98 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPD-GRVG-IDLGV 98 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCc-chHH-HhcCC
Confidence 4789999999999999999999999998776 266666663 334 5677 78999
Q ss_pred CCCCEEEEEeCCCcCeeecCCCCCCHHHH
Q 012452 427 GSFPTILFFPKHSSKPIKYPSERRDVDSL 455 (463)
Q Consensus 427 ~~~PTi~~f~~g~~~~~~y~gg~~~~~~L 455 (463)
.++|+.+++.+.+.....+.| ..+.+.|
T Consensus 99 ~~~P~~~~ld~~G~v~~~~~G-~~~~~~~ 126 (127)
T cd03010 99 YGVPETFLIDGDGIIRYKHVG-PLTPEVW 126 (127)
T ss_pred CCCCeEEEECCCceEEEEEec-cCChHhc
Confidence 999977777644433455555 5666654
No 112
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.06 E-value=1.1e-09 Score=100.45 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=65.5
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc----------------------HHHHHHcCCCC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------------------KEYAKQKLQLG 427 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~----------------------~~l~~~~~~I~ 427 (463)
.+++++|+||++||++|+.+.|.++++.++ ++.++.|+.+... ..+. +.|++.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~-~~~~v~ 136 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLG-LDLGVY 136 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchH-HhcCCe
Confidence 578999999999999999999999988653 3666666653220 3456 678999
Q ss_pred CCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 428 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 428 ~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
++|+.+++++.+++...+.| ..+.++|.++|+++
T Consensus 137 ~~P~~~~id~~G~i~~~~~G-~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 137 GAPETFLVDGNGVILYRHAG-PLNNEVWTEGFLPA 170 (173)
T ss_pred eCCeEEEEcCCceEEEEEec-cCCHHHHHHHHHHH
Confidence 99987777544433445555 68999999988865
No 113
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.06 E-value=1.2e-09 Score=102.65 Aligned_cols=142 Identities=19% Similarity=0.260 Sum_probs=96.9
Q ss_pred EEEEechhHHHHHH-HHHHHcCC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCcc
Q 012452 114 IAIAFSGAEDVALI-EYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED 191 (463)
Q Consensus 114 i~vafSGGKDS~vl-~L~~~~~~-~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~ 191 (463)
|+|++|||+||+++ +++.+... ++..+++|+|....+..++++++++++|++++++...... .........
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~-~~~~~~~~~------ 73 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELD-DPEFAKNPP------ 73 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhCCcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccc-cHHHhcCCC------
Confidence 57899999998776 77777544 7899999999878899999999999999998877543211 111111110
Q ss_pred chhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCc--cCcHHHHHHH
Q 012452 192 GHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA--NVKGNDIWNF 267 (463)
Q Consensus 192 ~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~--dWt~~DVw~y 267 (463)
..-..|......-+.+..+ +.+++++|...+|..+.|..+... .....+.||. .++..||..|
T Consensus 74 ~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~~~~~~~-------------~~~~iirPL~~~~~~K~ei~~~ 140 (202)
T cd01990 74 DRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYRPGLKAL-------------RELGVRSPLAEAGLGKAEIREL 140 (202)
T ss_pred CccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccChHHHHH-------------HHcCCcCchhhcCCCHHHHHHH
Confidence 1112244444555555554 456899999988864222211110 0123589999 5999999999
Q ss_pred HHhCCCCc
Q 012452 268 LRTMDVPI 275 (463)
Q Consensus 268 i~~~~lp~ 275 (463)
.++.|+|+
T Consensus 141 a~~~gl~~ 148 (202)
T cd01990 141 ARELGLPT 148 (202)
T ss_pred HHHcCCCC
Confidence 99999988
No 114
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.03 E-value=1.6e-09 Score=102.41 Aligned_cols=165 Identities=20% Similarity=0.275 Sum_probs=113.1
Q ss_pred CHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHH-cCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 012452 98 SPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE 175 (463)
Q Consensus 98 ~a~eil~~~~~~~~~~i~vafSGGKDS~vl-~L~~~-~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~ 175 (463)
+-++.|+.+++..+ +++||||||.||++| .++.+ .+.++..+++|+.+..+...+-+..+++++|++.+++.-..-.
T Consensus 5 ~Kl~~l~~~ik~~~-kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~ 83 (269)
T COG1606 5 SKLERLKKAIKEKK-KVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD 83 (269)
T ss_pred HHHHHHHHHHhhcC-eEEEEecCCccHHHHHHHHHHHhccceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcc
Confidence 45667777777765 599999999998877 66655 5788999999999999999999999999999998777322110
Q ss_pred HHHHHHhcCCCCCCccchhhhhhchhhh---HH-HHHHc-cCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCe
Q 012452 176 VQALVRSKGLFSFYEDGHQECCRVRKVR---PL-RRALK-GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSL 250 (463)
Q Consensus 176 ~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~---Pl-~r~l~-~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~ 250 (463)
+.+-.+... -|..+|.. -+ ..+.+ |+++++.|+..+|..+.|-.+....-.
T Consensus 84 ----------~~~~~n~~~-rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~~RPG~rA~kE~------------- 139 (269)
T COG1606 84 ----------PEFKENPEN-RCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFDYRPGLRALKEL------------- 139 (269)
T ss_pred ----------hhhccCCCC-cchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcCCCcchhhHHhc-------------
Confidence 111111112 24444422 23 33333 789999999999987555544332211
Q ss_pred EEEEeCcc--CcHHHHHHHHHhCCCCcc--chhccCCcccC
Q 012452 251 VKWNPVAN--VKGNDIWNFLRTMDVPIN--SLHSQGYISIG 287 (463)
Q Consensus 251 ~k~~PI~d--Wt~~DVw~yi~~~~lp~n--pLy~~Gy~siG 287 (463)
--..|+++ -+.++|-.|.+..|+++. |-+.|--+|++
T Consensus 140 gi~sPl~e~gitk~eIre~a~~lgl~~~~kp~~aCl~sr~p 180 (269)
T COG1606 140 GIRSPLAEFGITKKEIREIAKSLGLPTWDKPSMACLASRIP 180 (269)
T ss_pred CCCChHHHhCCcHHHHHHHHHHcCCCcccCccccccccccC
Confidence 12568876 599999999999999876 44444444443
No 115
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.02 E-value=1.7e-09 Score=92.99 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=68.4
Q ss_pred ecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEE---------------------cC
Q 012452 355 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR---------------------AD 413 (463)
Q Consensus 355 ~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD---------------------~d 413 (463)
.++++.+..... .+++++|+||++||++|+.+.|.+.++++++. +..+.+| .|
T Consensus 7 ~~~g~~~~~~~~---~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (123)
T cd03011 7 TLDGEQFDLESL---SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP---VVSVALRSGDDGAVARFMQKKGYGFPVIND 80 (123)
T ss_pred cCCCCEeeHHHh---CCCEEEEEEECCcChhhhhhChHHHHHHhhCC---EEEEEccCCCHHHHHHHHHHcCCCccEEEC
Confidence 344444444333 56899999999999999999999999987742 3323222 13
Q ss_pred CCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHH
Q 012452 414 GDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMA 457 (463)
Q Consensus 414 ~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~ 457 (463)
.+ .+++ +.|+|.++|+++++++++ +...+.| ..+.+.|.+
T Consensus 81 ~~-~~~~-~~~~i~~~P~~~vid~~g-i~~~~~g-~~~~~~~~~ 120 (123)
T cd03011 81 PD-GVIS-ARWGVSVTPAIVIVDPGG-IVFVTTG-VTSEWGLRL 120 (123)
T ss_pred CC-cHHH-HhCCCCcccEEEEEcCCC-eEEEEec-cCCHHHHHh
Confidence 34 6788 899999999999998887 4556666 688888765
No 116
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=99.01 E-value=1.8e-09 Score=99.90 Aligned_cols=152 Identities=18% Similarity=0.261 Sum_probs=89.4
Q ss_pred cEEEEechhHHHHHH-HHHHHc----CCCeEEEEEeCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 012452 113 DIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 185 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~----~~~i~vi~~DTg~~f--peT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~ 185 (463)
+|+||+||||||++| +++... +.++.++++|.|... .+-.++++++++.+|+++.+...+. . .
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~-------~-~-- 70 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDE-------D-R-- 70 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--C-------H-C--
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeee-------e-e--
Confidence 489999999999766 766653 447999999999653 3556899999999999998875443 0 0
Q ss_pred CCCCccchhhhhhchhhhHHHHHHcc--CceEEEeeeccCCcccccCCCceecC--CCCcCCc--CCCCCeEEEEeCccC
Q 012452 186 FSFYEDGHQECCRVRKVRPLRRALKG--LRAWITGQRKDQSPGTRSEIPVVQVD--PVFEGLE--GGVGSLVKWNPVANV 259 (463)
Q Consensus 186 ~~~~~~~~~~Cc~~~Kv~Pl~r~l~~--~~~~itG~Rr~ES~~~Ra~~~~~~~d--~~~~~~~--~~~~~~~k~~PI~dW 259 (463)
........||+...-.-|.+.... .+.+++|.-.|+-. .-.-+..+... ..+.+.. ....++..++||++.
T Consensus 71 --~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~-ET~l~~l~rg~~~~~l~~~~~~~~~~~~~~iRPLl~~ 147 (182)
T PF01171_consen 71 --KKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQA-ETFLMNLLRGSGLRGLAGMPPVSPFKGIKLIRPLLYV 147 (182)
T ss_dssp --CTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHH-HHHHHHHHHT--CCCCC-S-SEEEETTCEEE-GGGCS
T ss_pred --cccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccH-HHHHHHHHHhccchhhccccccccccCcccCCcchhC
Confidence 112234556766555667666654 46899999887743 11101000000 0000000 001347789999999
Q ss_pred cHHHHHHHHHhCCCCccc
Q 012452 260 KGNDIWNFLRTMDVPINS 277 (463)
Q Consensus 260 t~~DVw~yi~~~~lp~np 277 (463)
+.+|+-.|.+.+++||-.
T Consensus 148 ~k~ei~~~~~~~~i~~~~ 165 (182)
T PF01171_consen 148 SKDEIRAYAKENGIPYVE 165 (182)
T ss_dssp -HHHHHHHHHHTT-SSBS
T ss_pred CHHHHHHHHHHCCCcEEE
Confidence 999999999999999854
No 117
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.97 E-value=1.1e-08 Score=93.31 Aligned_cols=150 Identities=16% Similarity=0.247 Sum_probs=94.2
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCcc
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED 191 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~ 191 (463)
+++|++|||+||+++ +++.+.+.++..+++|.|....+-.++++++++++| +...+ |.
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~-~~------------------- 59 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEGYEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYV-PA------------------- 59 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcCCcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEE-eC-------------------
Confidence 478999999999776 788888778999999998664445589999999999 22221 10
Q ss_pred chhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccC-CCc-ee-cCCCCcCCcCCCCCeEEEEeCccCcHHHHHH
Q 012452 192 GHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSE-IPV-VQ-VDPVFEGLEGGVGSLVKWNPVANVKGNDIWN 266 (463)
Q Consensus 192 ~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~-~~~-~~-~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~ 266 (463)
.......-+.++.. +.+.+++|...+|.. .... .+. ++ .+... . .....++.-++||++|+..||..
T Consensus 60 -----~~~~~~~~l~~~a~~~g~~~i~~G~~~~d~~-~~~~~~~~~~~~~~~~~-~-~~~~~~~~v~~PL~~~~K~ei~~ 131 (169)
T cd01995 60 -----RNLIFLSIAAAYAEALGAEAIIIGVNAEDYS-GYPDCRPEFIEAMNKAL-N-LGTENGIKIHAPLIDLSKAEIVR 131 (169)
T ss_pred -----cCHHHHHHHHHHHHHCCCCEEEEeeccCccC-CCCCCCHHHHHHHHHHH-H-hhcCCCeEEEeCcccCCHHHHHH
Confidence 00011112222222 667899999998842 2110 000 00 00000 0 00113455689999999999999
Q ss_pred HHHhCCCCccchhccCCccc-CcccC
Q 012452 267 FLRTMDVPINSLHSQGYISI-GCEPC 291 (463)
Q Consensus 267 yi~~~~lp~npLy~~Gy~si-GC~~C 291 (463)
|++++++|+..-|.+.=.+- -|-.|
T Consensus 132 ~~~~~g~~~~~s~sC~~~~~~~CG~C 157 (169)
T cd01995 132 LGGELGVPLELTWSCYNGGEKHCGEC 157 (169)
T ss_pred HHhHcCCChhheeeccCCCCCCCCCC
Confidence 99999999998887643322 34444
No 118
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=3.2e-09 Score=105.74 Aligned_cols=156 Identities=15% Similarity=0.177 Sum_probs=100.9
Q ss_pred CCcEEEEechhHHHHHH-HHHHHcC--CCeEEEEEeCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 012452 111 GNDIAIAFSGAEDVALI-EYAHLTG--RPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 185 (463)
Q Consensus 111 ~~~i~vafSGGKDS~vl-~L~~~~~--~~i~vi~~DTg~~f--peT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~ 185 (463)
+.+|+||+||||||++| +++.+.. .++.++++|.|..- ..-.++++++++.+|+++++..-...... ..
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~- 94 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPLIVERVTDDLGR-----ET- 94 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccCceEEEEEecCCCCCccchHHHHHHHHHHHhCCceEEEEEEeeccc-----cc-
Confidence 46799999999999766 8888765 47889999999764 57788999999999987655432211100 00
Q ss_pred CCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCceecCCC-----CcCCcCCCCCeEEEEeCcc
Q 012452 186 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPV-----FEGLEGGVGSLVKWNPVAN 258 (463)
Q Consensus 186 ~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~-----~~~~~~~~~~~~k~~PI~d 258 (463)
.+..+...-|...+-.-+.++.. |.+.++||..+|+-. .-.-+.....+.. ........++...++|++.
T Consensus 95 --~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~-et~lm~l~~g~~~~~l~~~~~~~~~~~~~~~iRPL~~ 171 (298)
T COG0037 95 --LDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQA-ETFLMNLLRGSGLRGLRGMPPKRPFEGGLLIIRPLLY 171 (298)
T ss_pred --cCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHH-HHHHHHHHcCcHhhHHhhCCcccccCCCCeeeeeccc
Confidence 00011222266666666777776 457999999998864 2111111111100 0000101112268999999
Q ss_pred CcHHHHHHHHHhCCCCc
Q 012452 259 VKGNDIWNFLRTMDVPI 275 (463)
Q Consensus 259 Wt~~DVw~yi~~~~lp~ 275 (463)
++..||..|...+++||
T Consensus 172 ~~~~ei~~~~~~~~l~~ 188 (298)
T COG0037 172 VREKEIELYAKEKGLPY 188 (298)
T ss_pred CCHHHHHHHHHHcCCCE
Confidence 99999999999999976
No 119
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.95 E-value=3.9e-09 Score=88.02 Aligned_cols=75 Identities=24% Similarity=0.426 Sum_probs=62.3
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------cHHHHHHcCCCC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQLG 427 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~----------------------~~~l~~~~~~I~ 427 (463)
.+++++|+||++||++|+...+.+.++.+++.+.++.++.|+++.+ ...+. +.|++.
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 96 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELA-KAYGVR 96 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHH-HhcCcC
Confidence 3789999999999999999999999999999755799999999872 14677 899999
Q ss_pred CCCEEEEEeCCCcCeeec
Q 012452 428 SFPTILFFPKHSSKPIKY 445 (463)
Q Consensus 428 ~~PTi~~f~~g~~~~~~y 445 (463)
++|+++++++++.....+
T Consensus 97 ~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 97 GLPTTFLIDRDGRIRARH 114 (116)
T ss_pred ccceEEEECCCCcEEEEe
Confidence 999999997555433333
No 120
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.93 E-value=1.3e-08 Score=93.40 Aligned_cols=83 Identities=18% Similarity=0.330 Sum_probs=64.4
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC------------cHHHHHHcCCC--CCCCEEEEEeCCCc
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------QKEYAKQKLQL--GSFPTILFFPKHSS 440 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~------------~~~l~~~~~~I--~~~PTi~~f~~g~~ 440 (463)
||+||++||++|+++.|.+.++++++ ++.++.|++|+. +..+. ..|++ .++||.++++..++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~-~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQGDTAFPEALPAPPDVMQ-TFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCCCCCCceEecCchhHHH-HHhCCCCCCCCeEEEEeCCCc
Confidence 77899999999999999999999998 367777776643 12355 67885 69999999976665
Q ss_pred Ce-eecCCCCCCHHHHHHHHHHh
Q 012452 441 KP-IKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 441 ~~-~~y~gg~~~~~~L~~fI~~l 462 (463)
+. ..+.| ..+.++|.+.|+++
T Consensus 149 i~~~~~~G-~~~~~~L~~~I~~l 170 (181)
T PRK13728 149 EALPLLQG-ATDAAGFMARMDTV 170 (181)
T ss_pred EEEEEEEC-CCCHHHHHHHHHHH
Confidence 33 24666 78999998888764
No 121
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.93 E-value=4.2e-09 Score=121.19 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=72.4
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEc---C------------------------CCcHHHHHH
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA---D------------------------GDQKEYAKQ 422 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~---d------------------------~~~~~l~~~ 422 (463)
.++++||+|||+||++|+.+.|.|++++++|++.++.|+.|.+ | .+ .++. +
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~-~~~~-~ 496 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGD-MYLW-R 496 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCc-hHHH-H
Confidence 5899999999999999999999999999999886788888742 2 12 4577 7
Q ss_pred cCCCCCCCEEEEEe-CCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 423 KLQLGSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 423 ~~~I~~~PTi~~f~-~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
+|+|.++||+++|+ +|+ ....+.| ....+.|.++|+++
T Consensus 497 ~~~V~~iPt~ilid~~G~-iv~~~~G-~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGK-LIAQLSG-EGHRKDLDDLVEAA 535 (1057)
T ss_pred hcCCCccceEEEECCCCe-EEEEEec-ccCHHHHHHHHHHH
Confidence 89999999999995 555 3445555 68889999988764
No 122
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.92 E-value=1.2e-08 Score=88.68 Aligned_cols=104 Identities=11% Similarity=0.093 Sum_probs=84.4
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEec--CCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCC
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYA--PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 429 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA--~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~ 429 (463)
....++..+++.++. .....+|+|-. --++.+....=.+++++++|.+.++.|++||+|.+ ++++ .+|+|.++
T Consensus 18 g~~~~~~~~~~~~~~---~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~-~~LA-~~fgV~si 92 (132)
T PRK11509 18 GWTPVSESRLDDWLT---QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS-EAIG-DRFGVFRF 92 (132)
T ss_pred CCCccccccHHHHHh---CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC-HHHH-HHcCCccC
Confidence 344566688888886 55555555543 35788888889999999999854699999999999 9999 99999999
Q ss_pred CEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 430 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 430 PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
||++||++|+ .+....|.++.+++.++|+++
T Consensus 93 PTLl~FkdGk--~v~~i~G~~~k~~l~~~I~~~ 123 (132)
T PRK11509 93 PATLVFTGGN--YRGVLNGIHPWAELINLMRGL 123 (132)
T ss_pred CEEEEEECCE--EEEEEeCcCCHHHHHHHHHHH
Confidence 9999999999 444443478999999999875
No 123
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.91 E-value=9.4e-09 Score=95.75 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=62.4
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEE-------------cC-----CCcHHHHHHcCCCCCCCE
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR-------------AD-----GDQKEYAKQKLQLGSFPT 431 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD-------------~d-----~~~~~l~~~~~~I~~~PT 431 (463)
.+++++|+||++||++|+.+.|.+.++.+++.. ++.++..| .+ .. .++. +.|++..+|+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~-~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~-~~i~-~~y~v~~~P~ 149 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET-DVVMISDGTPAEHRRFLKDHELGGERYVVS-AEIG-MAFQVGKIPY 149 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC-cEEEEeCCCHHHHHHHHHhcCCCcceeech-hHHH-HhccCCccce
Confidence 578999999999999999999999998876532 34433311 00 12 4677 7899999999
Q ss_pred EEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 432 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 432 i~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
.+++++.+. +.+.+.....+.+.++++++
T Consensus 150 ~~lID~~G~--I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 150 GVLLDQDGK--IRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEEECCCCe--EEEccCCCCHHHHHHHHHHH
Confidence 988875552 34444334567777777765
No 124
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=98.90 E-value=1.7e-08 Score=92.92 Aligned_cols=146 Identities=16% Similarity=0.167 Sum_probs=86.1
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHH-----HHHHHHHHHHHhCCcE--EEEcCChHHHHHHHHhcC
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPE-----TYRFFDEVEKHFGIRI--EYMFPDAVEVQALVRSKG 184 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpe-----T~~~~~~~~~~~gl~i--~~~~p~~~~~~~~~~~~g 184 (463)
+++|++|||+||+++ +++.+.+.++..+|+|.|....+ ..+..+.+ ..|++++ .++..... ........+
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~g~~v~av~~d~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~-~~~~~~~~~ 78 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKRGIEVDALHFNSGPFTSEKAREKVEDLARKL-ARYSPGHKLVVIIFTFF-VQKEIYGYG 78 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHcCCeEEEEEEeCCCCCchHHHHHHHHHHHHH-HHhCCCCceEEEeCcHH-HHHHHHHhC
Confidence 378999999999876 78888888899999999975443 33333333 5576544 44544321 111111122
Q ss_pred CCCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcc-cccCCCceecCCCCcCCcCCCCCeEEEEeCccCcH
Q 012452 185 LFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPG-TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKG 261 (463)
Q Consensus 185 ~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~-~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~ 261 (463)
. +......|-..+ ..-+....+ +.+.+++|...++-.. .+.++.. .. ...++..+.|+++++.
T Consensus 79 ~---~~~~c~~Cr~~~-~~~~~~~A~~~g~~~I~~G~~~~D~~~~~~~~l~~--~~--------~~~~~~i~rPl~~~~K 144 (177)
T cd01712 79 K---EKYRCILCKRMM-YRIAEKLAEELGADAIVTGESLGQVASQTLENLLV--IS--------SGTDLPILRPLIGFDK 144 (177)
T ss_pred C---CccHhHHHHHHH-HHHHHHHHHHcCCCEEEEccCcccchHHHHHhhhh--cc--------cCCCCeEECCCCCCCH
Confidence 1 111112232222 222222222 5679999998877531 1222211 11 1134678999999999
Q ss_pred HHHHHHHHhCCCC
Q 012452 262 NDIWNFLRTMDVP 274 (463)
Q Consensus 262 ~DVw~yi~~~~lp 274 (463)
.||+.|.+++++|
T Consensus 145 ~eI~~~a~~~gl~ 157 (177)
T cd01712 145 EEIIGIARRIGTY 157 (177)
T ss_pred HHHHHHHHHcCCc
Confidence 9999999999984
No 125
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.90 E-value=1.8e-08 Score=85.94 Aligned_cols=100 Identities=10% Similarity=0.122 Sum_probs=75.4
Q ss_pred hHHHHHhh-cCCCCcEEEEEecCCChhHHHhHHH-H--HHHHHHhcCCCeEEEEEEcCCC-cHHHHHHcCCCCCCCEEEE
Q 012452 360 GMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGS-Y--VELADKLAGNGVKVGKFRADGD-QKEYAKQKLQLGSFPTILF 434 (463)
Q Consensus 360 ~f~~~i~~-~~~~k~vlV~FyA~wC~~C~~~~p~-l--~~la~~~~~~~v~f~~VD~d~~-~~~l~~~~~~I~~~PTi~~ 434 (463)
+|++.++. .+++|+++|+|+++||++|+.|... | .++.+.++. ++.+..+|++.. ..+++ ..|++.++|++++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~-~~~~~~~~P~~~~ 82 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFL-QSYKVDKYPHIAI 82 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHH-HHhCccCCCeEEE
Confidence 34444433 2368999999999999999999874 4 467777766 788999998752 26788 8999999999999
Q ss_pred EeC-CCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 435 FPK-HSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 435 f~~-g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
+.. ++.......| ..+.++|.+.|++.
T Consensus 83 i~~~~g~~l~~~~G-~~~~~~f~~~L~~~ 110 (114)
T cd02958 83 IDPRTGEVLKVWSG-NITPEDLLSQLIEF 110 (114)
T ss_pred EeCccCcEeEEEcC-CCCHHHHHHHHHHH
Confidence 976 3433444455 78999988887753
No 126
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.89 E-value=7.1e-09 Score=87.81 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=53.4
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------cHHHHHHcCCCCCC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLGSF 429 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~--------------------~~~l~~~~~~I~~~ 429 (463)
.+++++|+||++||++|+.+.|.++++++++.+ ++.++.+. +.+ +.++. +.|++..+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~ 96 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVLSAELG-MAYQVSKL 96 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEecHHHH-hhcCCCCc
Confidence 378999999999999999999999999988866 57666552 211 13455 56778888
Q ss_pred CEEEEEeCCCcCeeecCC
Q 012452 430 PTILFFPKHSSKPIKYPS 447 (463)
Q Consensus 430 PTi~~f~~g~~~~~~y~g 447 (463)
|+.+++++.+ .+.|.|
T Consensus 97 P~~~vid~~G--~v~~~~ 112 (114)
T cd02967 97 PYAVLLDEAG--VIAAKG 112 (114)
T ss_pred CeEEEECCCC--eEEecc
Confidence 8888886544 344443
No 127
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.88 E-value=8.6e-09 Score=89.37 Aligned_cols=77 Identities=13% Similarity=0.130 Sum_probs=60.3
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCC-----C---------------------cHHHHHHc
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-----D---------------------QKEYAKQK 423 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~-----~---------------------~~~l~~~~ 423 (463)
+++++||+||++||++|+...|.++++.+++++.++.++.|+.+. . +..+. +.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~-~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATW-RA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHH-HH
Confidence 478999999999999999999999999999987678888886521 1 13466 67
Q ss_pred CCCCCCCEEEEEeCCCcCeeecCC
Q 012452 424 LQLGSFPTILFFPKHSSKPIKYPS 447 (463)
Q Consensus 424 ~~I~~~PTi~~f~~g~~~~~~y~g 447 (463)
|++.++|+++++++.++....+.|
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEec
Confidence 899999999999755543444433
No 128
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.88 E-value=1e-08 Score=83.65 Aligned_cols=76 Identities=9% Similarity=0.074 Sum_probs=62.8
Q ss_pred CCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCC
Q 012452 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERR 450 (463)
Q Consensus 371 ~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~ 450 (463)
+..-+..|+++||++|....+.++++++.+.+ +.+..+|.++. ++++ ++|+|.++||+++ +|+ ..+.| ..
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~--i~~~~vd~~~~-~e~a-~~~~V~~vPt~vi--dG~---~~~~G-~~ 81 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPN--IEHEMIDGALF-QDEV-EERGIMSVPAIFL--NGE---LFGFG-RM 81 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC--ceEEEEEhHhC-HHHH-HHcCCccCCEEEE--CCE---EEEeC-CC
Confidence 45578889999999999999999999988765 99999999999 9999 9999999999974 666 33345 56
Q ss_pred CHHHHH
Q 012452 451 DVDSLM 456 (463)
Q Consensus 451 ~~~~L~ 456 (463)
+.+++.
T Consensus 82 ~~~e~~ 87 (89)
T cd03026 82 TLEEIL 87 (89)
T ss_pred CHHHHh
Confidence 666654
No 129
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.87 E-value=6.8e-09 Score=108.92 Aligned_cols=100 Identities=18% Similarity=0.335 Sum_probs=77.4
Q ss_pred hHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHH-HHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCCCCCCCEEEEE
Q 012452 360 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYV-ELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFF 435 (463)
Q Consensus 360 ~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~-~la~~~~~~~v~f~~VD~d~~~---~~l~~~~~~I~~~PTi~~f 435 (463)
.+++.+. .+++++|+|+|||+||-.||.+++..- +.....+-.++...++|+++++ .++. ++|++-+.|++++|
T Consensus 464 ~L~~~la-~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lL-k~~~~~G~P~~~ff 541 (569)
T COG4232 464 ELDQALA-EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALL-KRLGVFGVPTYLFF 541 (569)
T ss_pred HHHHHHH-hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHH-HHcCCCCCCEEEEE
Confidence 7777776 344569999999999999999999654 3333333335999999999886 4566 79999999999999
Q ss_pred eCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 436 PKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 436 ~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
+.+.+.+....| ..+.+.+.+++++.
T Consensus 542 ~~~g~e~~~l~g-f~~a~~~~~~l~~~ 567 (569)
T COG4232 542 GPQGSEPEILTG-FLTADAFLEHLERA 567 (569)
T ss_pred CCCCCcCcCCcc-eecHHHHHHHHHHh
Confidence 844443444665 89999999999864
No 130
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.87 E-value=3.5e-08 Score=105.30 Aligned_cols=167 Identities=14% Similarity=0.188 Sum_probs=104.5
Q ss_pred CcEEEEechhHHHHHH-HHHHHc-CCCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 012452 112 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF 188 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~~-~~~i~vi~~DTg~~-fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~ 188 (463)
++++|++|||+||+++ +++.+. +.++..+|+|+|.. -+|..++.+.+++++|++++++.-+.. +... ..|. .-
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~~lg~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vvd~~~~-f~~~--l~g~-~~ 291 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHKAIGDQLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDR-FLSA--LAGV-TD 291 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCHHHHHHHHHHHHHHcCCcEEEEccHHH-HHHh--ccCC-CC
Confidence 5699999999999776 777765 77899999999974 467777777888999999988743311 1111 1232 11
Q ss_pred CccchhhhhhchhhhHHHHHHc---cCceEEEeeeccCCcccccCCCceecCC--CCcCCcCCCCCeEEEEeCccCcHHH
Q 012452 189 YEDGHQECCRVRKVRPLRRALK---GLRAWITGQRKDQSPGTRSEIPVVQVDP--VFEGLEGGVGSLVKWNPVANVKGND 263 (463)
Q Consensus 189 ~~~~~~~Cc~~~Kv~Pl~r~l~---~~~~~itG~Rr~ES~~~Ra~~~~~~~d~--~~~~~~~~~~~~~k~~PI~dWt~~D 263 (463)
+......||..+. .-+.+..+ +.+.+++|+..++-..+|...+.-.... ...+... ....-.+.||.+++.+|
T Consensus 292 ~~~~r~~~~~~~~-~~~~~~a~~~~g~~~latGhn~dD~~Et~~~~~~~~ik~~~~l~Gl~~-~~~~~ii~PL~~l~K~E 369 (511)
T PRK00074 292 PEEKRKIIGREFI-EVFEEEAKKLGGVKFLAQGTLYPDVIESGGTKKAATIKSHHNVGGLPE-DMKLKLVEPLRELFKDE 369 (511)
T ss_pred cHHhhhhhhHHHH-HHHHHHHHHccCCCEEEECCCcchhhhhcCCCCccccccccCccCcCh-hHhcccccchhhcCHHH
Confidence 2222234443332 34444443 4568999997777542331100000000 0001100 01234689999999999
Q ss_pred HHHHHHhCCCCccchhccCCc
Q 012452 264 IWNFLRTMDVPINSLHSQGYI 284 (463)
Q Consensus 264 Vw~yi~~~~lp~npLy~~Gy~ 284 (463)
|-.|.+++|||+.-.+++-|+
T Consensus 370 Ir~~a~~~gLp~~~~~~~p~p 390 (511)
T PRK00074 370 VRKLGLELGLPEEIVYRHPFP 390 (511)
T ss_pred HHHHHHHcCCCHHHhCCCCCC
Confidence 999999999998888877544
No 131
>PRK00919 GMP synthase subunit B; Validated
Probab=98.84 E-value=8.6e-08 Score=95.43 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=99.6
Q ss_pred CcEEEEechhHHHHHH-HHHHH-cCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCC
Q 012452 112 NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFY 189 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~-~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~ 189 (463)
++++|+||||.||+++ .++++ .+.++..+|+|+|.....-.+.+.++++++ ++++++.-... +...+ .+. .-+
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~lG~~v~aV~vD~G~~~~~E~e~a~~~~~~~-i~~~vvd~~e~-fl~~L--~~v-~np 96 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGLMRKGETERIKETFSDM-LNLRIVDAKDR-FLDAL--KGV-TDP 96 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHHhCCeEEEEEEECCCCCHHHHHHHHHHHhcc-CCcEEEECCHH-HHHhc--cCC-CCh
Confidence 5699999999998776 77767 477899999999988777788888888877 78777633221 21111 222 111
Q ss_pred ccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCccCcHHHHHHH
Q 012452 190 EDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNF 267 (463)
Q Consensus 190 ~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~y 267 (463)
...... |......-+.+..+ +.+.+++|+-.++....|.++... ....+... ....-.+.||.+++.+||..|
T Consensus 97 e~rr~~-c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~iE~r~~iks~---~nv~gl~~-~~~~~Ii~PL~~l~K~EVr~l 171 (307)
T PRK00919 97 EEKRKI-IGETFIRVFEEVAKEIGAEYLVQGTIAPDWIESEGGIKSH---HNVGGLPE-GMVLKIVEPLRDLYKDEVREV 171 (307)
T ss_pred HHhhhH-HHHHHHHHHHHHHHHcCCCEEEECCCCcchhhccCccccc---ccccccCh-hhcCCcccCchhCcHHHHHHH
Confidence 111112 22222333333333 567899999887764334332110 01111000 012346899999999999999
Q ss_pred HHhCCCCccchhcc
Q 012452 268 LRTMDVPINSLHSQ 281 (463)
Q Consensus 268 i~~~~lp~npLy~~ 281 (463)
.++.|||+.-++..
T Consensus 172 a~~lGLp~~~~~r~ 185 (307)
T PRK00919 172 ARALGLPEEISERM 185 (307)
T ss_pred HHHcCCChhhhCCC
Confidence 99999998655544
No 132
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.82 E-value=1.2e-07 Score=94.89 Aligned_cols=166 Identities=16% Similarity=0.231 Sum_probs=99.1
Q ss_pred CcEEEEechhHHHHHH-HHHHHc-CCCeEEEEEeCCCCcH-HHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 012452 112 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNP-ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF 188 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~~-~~~i~vi~~DTg~~fp-eT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~ 188 (463)
++++|++|||.||+++ +++++. +.++..+|+|+|..-. |..+..+.+++++|++++++.-... +.... .+...
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~~G~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~-fl~~l--~~v~~- 92 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRAIGDRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAKER-FLSAL--KGVTD- 92 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHHhCCCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCcHH-HHhhh--cCCCC-
Confidence 5699999999998776 777664 6789999999997654 4444455566789999987743321 21111 22211
Q ss_pred CccchhhhhhchhhhHHHHHHc--c-CceEEEeeeccCCcccccC-CCceecCCCCcCCcCCCCCeEEEEeCccCcHHHH
Q 012452 189 YEDGHQECCRVRKVRPLRRALK--G-LRAWITGQRKDQSPGTRSE-IPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDI 264 (463)
Q Consensus 189 ~~~~~~~Cc~~~Kv~Pl~r~l~--~-~~~~itG~Rr~ES~~~Ra~-~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~DV 264 (463)
+......| ......-+.+..+ + .+.+++|+-.++-...|.. ...+.......+.. .....-.+.||.+.+.+||
T Consensus 93 p~~~r~~~-~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~~Es~~G~~~~iks~~~~~gl~-~~~~~~ii~PL~~l~K~EV 170 (311)
T TIGR00884 93 PEEKRKII-GRVFIEVFEREAKKIGDAEYLAQGTIYPDVIESAAGTAHVIKSHHNVGGLP-EDMKLKLVEPLRELFKDEV 170 (311)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEECCCChhhhhhccChhHhhhccCccccCC-hhhcCceEEEcccCcHHHH
Confidence 11111123 2223333444433 3 5689999988764323321 00000000000000 0012336899999999999
Q ss_pred HHHHHhCCCCccchhccCC
Q 012452 265 WNFLRTMDVPINSLHSQGY 283 (463)
Q Consensus 265 w~yi~~~~lp~npLy~~Gy 283 (463)
..|-++.|+|++-.+++=|
T Consensus 171 r~la~~lgLp~~~~~~~Pf 189 (311)
T TIGR00884 171 RKLGKELGLPEEIVWRHPF 189 (311)
T ss_pred HHHHHHcCCCHHHhhCCCC
Confidence 9999999999888887744
No 133
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.82 E-value=2.3e-08 Score=93.89 Aligned_cols=44 Identities=11% Similarity=0.190 Sum_probs=40.9
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 413 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d 413 (463)
+++++||+|||+||++|+..+|.+.++.++|++.++.|+.|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 57899999999999999999999999999998778999999874
No 134
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.82 E-value=3e-08 Score=95.16 Aligned_cols=92 Identities=15% Similarity=0.218 Sum_probs=69.1
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCC-------Cc---HHHHHHcCC--------------
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQ---KEYAKQKLQ-------------- 425 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~-------~~---~~l~~~~~~-------------- 425 (463)
.++++||+|||+||++|+...|.|.++.++|++.++.|+.|+++. .. .+++.++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 478999999999999999999999999999988789999999752 10 122101221
Q ss_pred --------------------CCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 426 --------------------LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 426 --------------------I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
|...||.+++++.++....|.| ..+.++|.+.|+++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G-~~~~~~le~~I~~l 233 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPP-TTSPFQIEKDIQKL 233 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECC-CCCHHHHHHHHHHH
Confidence 1235888888766655666666 68899999999875
No 135
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.81 E-value=3e-08 Score=87.93 Aligned_cols=77 Identities=25% Similarity=0.423 Sum_probs=63.3
Q ss_pred CCCcEEEEEecC-CChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------HHHHHHcCCCC-
Q 012452 370 RQEPWLVVLYAP-WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------KEYAKQKLQLG- 427 (463)
Q Consensus 370 ~~k~vlV~FyA~-wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~--------------------~~l~~~~~~I~- 427 (463)
.+++++|+||++ ||++|+...|.+.++.+++++.++.++.|..+.+. ..+. +.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~ 105 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALA-KALGVTI 105 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHH-HHTTCEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHH-HHhCCcc
Confidence 689999999999 99999999999999999988767999888866541 4577 788988
Q ss_pred --------CCCEEEEEeCCCcCeeecCC
Q 012452 428 --------SFPTILFFPKHSSKPIKYPS 447 (463)
Q Consensus 428 --------~~PTi~~f~~g~~~~~~y~g 447 (463)
++|+++++.+.+.+.....|
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g 133 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVG 133 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeC
Confidence 99999999777754444444
No 136
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.80 E-value=9.1e-08 Score=94.92 Aligned_cols=166 Identities=14% Similarity=0.148 Sum_probs=101.8
Q ss_pred cEEEEechhHHHHHH-HHHHH-cCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHHHhcCCCCCC
Q 012452 113 DIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVRSKGLFSFY 189 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~-~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl-~i~~~~p~~~~~~~~~~~~g~~~~~ 189 (463)
+++|++|||.||+++ +|+++ .+.++..+|+|+|....+-.+.+.++++++++ +++++.-... +.. ...+... +
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~lG~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e~-fl~--~l~~v~n-p 76 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIGDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASER-FLS--ALKGVTD-P 76 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHhCCcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcHH-HHH--HhcCCCC-H
Confidence 478999999999766 78877 47789999999998766667788888888886 8887743321 221 1122211 1
Q ss_pred ccchhhhhhchhhhHHHHHHc--c-CceEEEeeeccCCcccccC-C--CceecCCCCcCCcCCCCCeEEEEeCccCcHHH
Q 012452 190 EDGHQECCRVRKVRPLRRALK--G-LRAWITGQRKDQSPGTRSE-I--PVVQVDPVFEGLEGGVGSLVKWNPVANVKGND 263 (463)
Q Consensus 190 ~~~~~~Cc~~~Kv~Pl~r~l~--~-~~~~itG~Rr~ES~~~Ra~-~--~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~D 263 (463)
.. .+..|......-+.+..+ + .+.+++|+-.++-...|.. . ..+.......+... ....-.+.||.+++.+|
T Consensus 77 e~-rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~~Es~~~~~~~~~IKs~~n~~Gl~a-~~~~~vi~PL~~l~K~E 154 (295)
T cd01997 77 EE-KRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSGKGSADTIKSHHNVGGLPE-DMKLKLIEPLRDLFKDE 154 (295)
T ss_pred HH-HHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccchhhhcccccccccccccccccccch-HhhCCcccccccCcHHH
Confidence 11 122233333444444444 4 6789999988764212221 0 00000000001000 01233589999999999
Q ss_pred HHHHHHhCCCCccchhccCCc
Q 012452 264 IWNFLRTMDVPINSLHSQGYI 284 (463)
Q Consensus 264 Vw~yi~~~~lp~npLy~~Gy~ 284 (463)
|..|-++.|+|..-++++-|+
T Consensus 155 VR~lar~lGLp~~~~~~~Pfp 175 (295)
T cd01997 155 VRELGRELGLPEEIVERHPFP 175 (295)
T ss_pred HHHHHHHcCCCchhhCCCCCC
Confidence 999999999998777776444
No 137
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.77 E-value=1.8e-08 Score=80.68 Aligned_cols=64 Identities=25% Similarity=0.487 Sum_probs=50.1
Q ss_pred CCCcEEEEEecCCChhHHHhHHHH---HHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 437 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l---~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~ 437 (463)
++++++|+|+++||++|+.|...+ .++.+.+.. ++.++.||.+.. .... .+...++|+++|++.
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~~~-~~~~--~~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVDDE-DPNA--QFDRQGYPTFFFLDP 82 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETTTH-HHHH--HHHHCSSSEEEEEET
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcCCC-ChhH--HhCCccCCEEEEeCC
Confidence 799999999999999999999887 466665655 799999999877 3322 122266999999863
No 138
>PRK14561 hypothetical protein; Provisional
Probab=98.77 E-value=1.7e-07 Score=87.63 Aligned_cols=141 Identities=15% Similarity=0.204 Sum_probs=91.1
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHH---HHHhcCCCCC
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQA---LVRSKGLFSF 188 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~---~~~~~g~~~~ 188 (463)
+++|++|||+||+++ +++.+. .++.++++|.|.. + -.++++.+++++|++.+++..+...... .....+.|
T Consensus 2 kV~ValSGG~DSslll~~l~~~-~~v~a~t~~~g~~-~-e~~~a~~~a~~lGi~~~~v~~~~~~~~~~~~~~~~~~~P-- 76 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-YDVELVTVNFGVL-D-SWKHAREAAKALGFPHRVLELDREILEKAVDMIIEDGYP-- 76 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-CCeEEEEEecCch-h-HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHcCCC--
Confidence 488999999998776 666555 5677889998863 3 4789999999999999887655432221 12222222
Q ss_pred CccchhhhhhchhhhHHHHHHccCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCccCcHHHHHHHH
Q 012452 189 YEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFL 268 (463)
Q Consensus 189 ~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw~yi 268 (463)
...|... ...-+..+..+++.+++|+++|+.. .-..++.+.. .. ...++.-++||+.|+..||..|.
T Consensus 77 ----~~~~~~l-~~~~l~~~a~g~~~Ia~G~n~DD~~-et~~r~~~~a---~~----~~~gi~iirPL~~~~K~eI~~la 143 (194)
T PRK14561 77 ----NNAIQYV-HEHALEALAEEYDVIADGTRRDDRV-PKLSRSEIQS---LE----DRKGVQYIRPLLGFGRKTIDRLV 143 (194)
T ss_pred ----CchhHHH-HHHHHHHHHcCCCEEEEEecCCCcc-hhccHHHHhh---hh----cCCCcEEEeeCCCCCHHHHHHHH
Confidence 1223332 2233444446888999999999953 2111221110 00 11356678999999999999998
Q ss_pred HhC
Q 012452 269 RTM 271 (463)
Q Consensus 269 ~~~ 271 (463)
+..
T Consensus 144 ~~l 146 (194)
T PRK14561 144 ERL 146 (194)
T ss_pred Hhh
Confidence 875
No 139
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.1e-08 Score=94.05 Aligned_cols=87 Identities=22% Similarity=0.404 Sum_probs=76.2
Q ss_pred CCeeec-ChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCC--
Q 012452 351 QNLVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG-- 427 (463)
Q Consensus 351 ~~V~~l-t~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~-- 427 (463)
+.+.-+ +.+.+++.+. .+..+.|+|.|||.|.+.|+.+.|.|.+|+.+|..++++|++||+... ++.+ .+|+|.
T Consensus 124 e~ikyf~~~q~~deel~-rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf-pd~a-~kfris~s 200 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELD-RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF-PDVA-AKFRISLS 200 (265)
T ss_pred hheeeecchhhHHHHhc-cCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC-cChH-HheeeccC
Confidence 467777 5566666655 566779999999999999999999999999999988999999999999 9999 899874
Q ss_pred ----CCCEEEEEeCCCc
Q 012452 428 ----SFPTILFFPKHSS 440 (463)
Q Consensus 428 ----~~PTi~~f~~g~~ 440 (463)
..||+++|++|++
T Consensus 201 ~~srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKE 217 (265)
T ss_pred cccccCCeEEEEccchh
Confidence 6899999999996
No 140
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.76 E-value=1.8e-07 Score=95.22 Aligned_cols=155 Identities=13% Similarity=0.095 Sum_probs=101.0
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCC----------cHHHHHHHHHHHHHhCCcEEEEcCChHHHH----
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL----------NPETYRFFDEVEKHFGIRIEYMFPDAVEVQ---- 177 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~----------fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~---- 177 (463)
+|+|++|||+||+++ +++.+.+.++..+|+|++.. ..+-.++++++++++|++++++.-... ++
T Consensus 2 kVlValSGGvDSsvla~lL~~~G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~-f~~~vi 80 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQGYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDFEKE-FWDRVI 80 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHcCCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeCHHH-HHHHHH
Confidence 589999999998766 88888888899999998643 356678999999999999887743221 21
Q ss_pred -HHHHh--cCCCCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCceec-CCC----CcCC-cCC
Q 012452 178 -ALVRS--KGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQV-DPV----FEGL-EGG 246 (463)
Q Consensus 178 -~~~~~--~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~~-d~~----~~~~-~~~ 246 (463)
.++.. .|.. + .....|-...|..-+.+..+ +.+.++||.-.++.. .+ + .+.. |.. |.-. ...
T Consensus 81 ~~~~~~~~~g~t--p-npc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~-~~-~--L~rg~d~~kDqsy~l~~l~~ 153 (346)
T PRK00143 81 DYFLDEYKAGRT--P-NPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRD-GR-E--LLRGVDPNKDQSYFLYQLTQ 153 (346)
T ss_pred HHHHHHHHcCCC--C-CcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccc-cc-e--EEEccCCCcChhhhhccCCH
Confidence 12222 2221 1 12234555567777777776 556899999887753 22 1 1111 110 0000 000
Q ss_pred CCCeEEEEeCccCcHHHHHHHHHhCCCCc
Q 012452 247 VGSLVKWNPVANVKGNDIWNFLRTMDVPI 275 (463)
Q Consensus 247 ~~~~~k~~PI~dWt~~DVw~yi~~~~lp~ 275 (463)
......+.||.+++.+||..|.++++||+
T Consensus 154 ~~l~~~i~PL~~~~K~eVr~~A~~~gl~~ 182 (346)
T PRK00143 154 EQLAKLLFPLGELTKPEVREIAEEAGLPV 182 (346)
T ss_pred HHhcceeccCccCCHHHHHHHHHHcCCCc
Confidence 01124689999999999999999999976
No 141
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.73 E-value=3.3e-09 Score=98.79 Aligned_cols=100 Identities=21% Similarity=0.451 Sum_probs=90.8
Q ss_pred CCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012452 351 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 430 (463)
Q Consensus 351 ~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~P 430 (463)
..+..++.+|+..++. .-|++.|+||||+.|+...|+|+.++.--.+-+|.+++||+..+ +-+. -+|-|...|
T Consensus 24 s~~~~~~eenw~~~l~-----gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n-pgLs-GRF~vtaLp 96 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLT-----GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN-PGLS-GRFLVTALP 96 (248)
T ss_pred ceeEEecccchhhhhc-----hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec-cccc-eeeEEEecc
Confidence 4799999999999875 67999999999999999999999988766666899999999999 8888 899999999
Q ss_pred EEEEEeCCCcCeeecCCCCCCHHHHHHHHH
Q 012452 431 TILFFPKHSSKPIKYPSERRDVDSLMAFVD 460 (463)
Q Consensus 431 Ti~~f~~g~~~~~~y~gg~~~~~~L~~fI~ 460 (463)
||+-.++|. .-.|.| .++.++++.|+.
T Consensus 97 tIYHvkDGe--Frrysg-aRdk~dfisf~~ 123 (248)
T KOG0913|consen 97 TIYHVKDGE--FRRYSG-ARDKNDFISFEE 123 (248)
T ss_pred eEEEeeccc--cccccC-cccchhHHHHHH
Confidence 999999998 677877 899999999986
No 142
>PLN02412 probable glutathione peroxidase
Probab=98.73 E-value=8.3e-08 Score=87.58 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=67.3
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCC-------CcHHH----HHHcCC-------------
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQKEY----AKQKLQ------------- 425 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~-------~~~~l----~~~~~~------------- 425 (463)
.++++||+||++||++|+...|.|.++.++|++.++.|+.|+++. ...++ + ++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~-~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVC-TRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHH-HccCCCCceEeEEeeCC
Confidence 468999999999999999999999999999998789999998752 10121 2 2211
Q ss_pred ---------------------CCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 426 ---------------------LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 426 ---------------------I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
|...|+.++++.+++....+.| ..+.++|.+.|+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g-~~~~~~l~~~i~~~ 163 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAP-TTSPLKIEKDIQNL 163 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECC-CCCHHHHHHHHHHH
Confidence 3335788888655554455555 68888998888765
No 143
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.72 E-value=5.1e-08 Score=84.67 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=52.8
Q ss_pred hHHHHHhh-cCCCCcEEEEEecCCChhHHHhHHHHH---HHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEE
Q 012452 360 GMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSYV---ELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 435 (463)
Q Consensus 360 ~f~~~i~~-~~~~k~vlV~FyA~wC~~C~~~~p~l~---~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f 435 (463)
+|++.+.. ..++|+++|+||++||++|+.|...+- ++.+.... ++..+.+|.+..+.... ..+ .++||++|+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~td~~~~--~~g-~~vPtivFl 86 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHETTDKNLS--PDG-QYVPRIMFV 86 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEeccCCCCcC--ccC-cccCeEEEE
Confidence 34444332 237899999999999999999998753 56666654 57777888764312222 233 689999999
Q ss_pred eCCCc
Q 012452 436 PKHSS 440 (463)
Q Consensus 436 ~~g~~ 440 (463)
+....
T Consensus 87 d~~g~ 91 (130)
T cd02960 87 DPSLT 91 (130)
T ss_pred CCCCC
Confidence 66554
No 144
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.68 E-value=3.7e-07 Score=93.09 Aligned_cols=172 Identities=12% Similarity=0.037 Sum_probs=104.3
Q ss_pred CcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHH-----Hhc
Q 012452 112 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALV-----RSK 183 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~--fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~-----~~~ 183 (463)
.+++|++|||.||+++ +|+.+.+.++..+|+|.+.. -++..+.++++++++|++++++.-.. .++..+ ..+
T Consensus 6 ~kVlValSGGVDSsvaa~LL~~~G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~-~f~~~v~~~f~~~y 84 (360)
T PRK14665 6 KRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARK-VFRKQIIDYFIDEY 84 (360)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHcCCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHH-HHHHHHHhhhhhHH
Confidence 4699999999998776 88888888899999987532 35668889999999999998874321 222221 111
Q ss_pred --CCCCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCcee--cCCC----CcCCcCCCC-CeEE
Q 012452 184 --GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ--VDPV----FEGLEGGVG-SLVK 252 (463)
Q Consensus 184 --g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~--~d~~----~~~~~~~~~-~~~k 252 (463)
|.. ......|-...|..-+.++.+ +.+.++||.-..-.. ......+. .|.. |.-..-... -...
T Consensus 85 ~~g~t---pnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~--~~~~~~l~~g~D~~kDQSyfL~~l~~~~l~~~ 159 (360)
T PRK14665 85 MSGHT---PVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQW--IDGNYYITPAEDVDKDQSFFLWGLRQEILQRM 159 (360)
T ss_pred hccCC---CCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceec--cCCcEEEEeecCCCCCceEEecCCCHHHHhhe
Confidence 210 112234556677777766665 556899996542110 00111010 1110 000000000 0123
Q ss_pred EEeCccCcHHHHHHHHHhCCCCccchhccCCcccCcccCC
Q 012452 253 WNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCT 292 (463)
Q Consensus 253 ~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siGC~~Ct 292 (463)
+.||.+++.+||.++.++.+++ +..++ =.|-|+.+|+
T Consensus 160 ifPLg~~~K~eVr~~A~~~gl~--~~a~k-~eSq~iCF~~ 196 (360)
T PRK14665 160 LLPMGGMTKSEARAYAAERGFE--KVAKK-RDSLGVCFCP 196 (360)
T ss_pred eccCcCCCHHHHHHHHHHCCCC--ccCcC-CCCCccccCC
Confidence 7999999999999999999973 22333 3677877886
No 145
>smart00594 UAS UAS domain.
Probab=98.67 E-value=2.2e-07 Score=80.24 Aligned_cols=99 Identities=12% Similarity=0.131 Sum_probs=72.9
Q ss_pred hhHHHHHhh-cCCCCcEEEEEecCCChhHHHhHHHH---HHHHHHhcCCCeEEEEEEcCCC-cHHHHHHcCCCCCCCEEE
Q 012452 359 TGMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGD-QKEYAKQKLQLGSFPTIL 433 (463)
Q Consensus 359 ~~f~~~i~~-~~~~k~vlV~FyA~wC~~C~~~~p~l---~~la~~~~~~~v~f~~VD~d~~-~~~l~~~~~~I~~~PTi~ 433 (463)
.+|++.+.. ..++|+++|+|+++||++|+.|.... .++.+.+.. ++.+..+|++.. +.+++ ..|++.++|+++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~-~~~~~~~~P~~~ 91 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVS-QFYKLDSFPYVA 91 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHH-HhcCcCCCCEEE
Confidence 345554433 23578999999999999999998754 367777766 788889998754 26788 899999999999
Q ss_pred EEeCCC-cC---eeecCCCCCCHHHHHHHH
Q 012452 434 FFPKHS-SK---PIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 434 ~f~~g~-~~---~~~y~gg~~~~~~L~~fI 459 (463)
++.... .. .+....|..+.++|+.++
T Consensus 92 ~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 92 IVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 995443 11 233333478999998876
No 146
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.66 E-value=3.4e-07 Score=93.29 Aligned_cols=160 Identities=11% Similarity=0.106 Sum_probs=96.6
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCC----------CcHHHHHHHHHHHHHhCCcEEEEcCChHHHHH---
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGR----------LNPETYRFFDEVEKHFGIRIEYMFPDAVEVQA--- 178 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~----------~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~--- 178 (463)
+++|++|||+||+++ +|+.+.+.++..+|+++.. ..++-.+.++++++++|++++++.-.. .+++
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~~~-~f~~~v~ 80 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQGYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNFQK-EYWNKVF 80 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcCCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEECHH-HHHHHHH
Confidence 589999999998776 8888888888888885421 234577889999999999998764322 2221
Q ss_pred --HHHh--cCCCCCCccchhhhhhchhhhHHHHHHc---cCceEEEeeec---cCCcccccCCCceecCC--CCcCC-cC
Q 012452 179 --LVRS--KGLFSFYEDGHQECCRVRKVRPLRRALK---GLRAWITGQRK---DQSPGTRSEIPVVQVDP--VFEGL-EG 245 (463)
Q Consensus 179 --~~~~--~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~---~~~~~itG~Rr---~ES~~~Ra~~~~~~~d~--~~~~~-~~ 245 (463)
++.. .|.. + +..-.|-...|..-|.++.. +.+.++||.-. ++.. ....+.....+. .+.-. ..
T Consensus 81 ~~~~~~y~~g~t--p-npC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~~-~~~l~~~~d~~kDqsy~L~~l~ 156 (352)
T TIGR00420 81 EPFIQEYKEGRT--P-NPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIEG-KSLLLRALDKNKDQSYFLYHLS 156 (352)
T ss_pred HHHHHHHHcCCC--C-CcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCCC-cEEEEEccCCCcCcceecccCC
Confidence 2222 1211 1 12234445567677766553 56789999965 2221 111111111110 01000 00
Q ss_pred CCCCeEEEEeCccCcHHHHHHHHHhCCCCccc
Q 012452 246 GVGSLVKWNPVANVKGNDIWNFLRTMDVPINS 277 (463)
Q Consensus 246 ~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~np 277 (463)
...-.-.+.||.+|+.+||..|.+++++|+..
T Consensus 157 ~~~l~~~i~PL~~~~K~EVr~~A~~~gl~~~~ 188 (352)
T TIGR00420 157 HEQLAKLLFPLGELLKPEVRQIAKNAGLPTAE 188 (352)
T ss_pred HHHhhhhcccCCCCCHHHHHHHHHHcCCCCCC
Confidence 00012258899999999999999999998643
No 147
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.63 E-value=8.1e-07 Score=90.58 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=99.6
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCC--------cHHHHHHHHHHHHHhCCcEEEEcCChHHHH----HH
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL--------NPETYRFFDEVEKHFGIRIEYMFPDAVEVQ----AL 179 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~--------fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~----~~ 179 (463)
+|+|++|||+||+++ +++.+.+.++..+|+|++.. -.+-.++++++++++|++++++.-...... .+
T Consensus 1 kVlValSGGvDSsvla~lL~~~g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~~v~~~~ 80 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQGYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKVFEPF 80 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcCCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHH
Confidence 488999999998766 88888888888999998732 346678999999999999987753322111 11
Q ss_pred HHh--cCCCCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCce-ec-CC----CCcCCcC-CCC
Q 012452 180 VRS--KGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVV-QV-DP----VFEGLEG-GVG 248 (463)
Q Consensus 180 ~~~--~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~-~~-d~----~~~~~~~-~~~ 248 (463)
+.. .|. .+ .....|....|..-+.+... +.+.++||.-.+... .-...+.+ .. |. .|.-..- ...
T Consensus 81 i~~~~~g~--tp-npc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~-~~~~~~~l~rg~d~~kdqsy~L~~~~~~~ 156 (349)
T cd01998 81 LEEYKKGR--TP-NPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEE-DNNGRYRLLRGVDPNKDQSYFLSQLSQEQ 156 (349)
T ss_pred HHHHHcCC--CC-CchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeee-cCCCceEEeecCCCCCCcceEeccCCHHH
Confidence 222 221 11 12334555568777776655 556899998776542 11011111 11 11 0000000 000
Q ss_pred CeEEEEeCccCcHHHHHHHHHhCCCCc
Q 012452 249 SLVKWNPVANVKGNDIWNFLRTMDVPI 275 (463)
Q Consensus 249 ~~~k~~PI~dWt~~DVw~yi~~~~lp~ 275 (463)
....+.||.+++.+||..|.++++||+
T Consensus 157 l~~ii~PL~~~~K~eVr~~A~~~gl~~ 183 (349)
T cd01998 157 LSRLIFPLGDLTKPEVREIAKELGLPV 183 (349)
T ss_pred HhheeecCCCCCHHHHHHHHHHcCCCC
Confidence 134689999999999999999999984
No 148
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=98.63 E-value=1.8e-07 Score=98.00 Aligned_cols=152 Identities=14% Similarity=0.167 Sum_probs=95.2
Q ss_pred CCcEEEEechhHHHHHH-HHHHHc-----CCCeEEEEEeCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 012452 111 GNDIAIAFSGAEDVALI-EYAHLT-----GRPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS 182 (463)
Q Consensus 111 ~~~i~vafSGGKDS~vl-~L~~~~-----~~~i~vi~~DTg~~--fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~ 182 (463)
+.+++|++|||+||++| |++.+. +.++.++|+|.|.. -.+-.++++++++.+|+++++..-+.. .
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~~~-------~ 87 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQLD-------Q 87 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEecc-------C
Confidence 35699999999999766 776532 45789999999965 234468999999999999877542211 0
Q ss_pred cCCCCCCccchhhhhhchhhhHHHHHHccCceEEEeeeccCCcccccCCCceecCCCCcCCcC-----CCCCeEEEEeCc
Q 012452 183 KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEG-----GVGSLVKWNPVA 257 (463)
Q Consensus 183 ~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~-----~~~~~~k~~PI~ 257 (463)
.+ .+...|.+...-.-+.......+++++|...|+-. .-.-+.... .....|..+ ..++...++||+
T Consensus 88 ~~------~~~e~~AR~~Ry~~~~~~~~~~~~l~~aHh~DDq~-ET~L~~L~r-G~g~~gL~gm~~~~~~~~~~liRPLL 159 (436)
T PRK10660 88 RG------LGIEAAARQARYQAFARTLLPGEVLVTAQHLDDQC-ETFLLALKR-GSGPAGLSAMAEVSPFAGTRLIRPLL 159 (436)
T ss_pred CC------CCHHHHHHHHHHHHHHHHHHhCCEEEEcCchHHHH-HHHHHHHHc-CCChhhccccceecccCCCcEeCCCc
Confidence 01 12233333333344444555556899999888743 111011100 000000000 002345789999
Q ss_pred cCcHHHHHHHHHhCCCCccc
Q 012452 258 NVKGNDIWNFLRTMDVPINS 277 (463)
Q Consensus 258 dWt~~DVw~yi~~~~lp~np 277 (463)
+.+.+||..|...++|||..
T Consensus 160 ~~~k~ei~~ya~~~~l~~~~ 179 (436)
T PRK10660 160 ARSREELEQYAQAHGLRWIE 179 (436)
T ss_pred cCCHHHHHHHHHHcCCCEEE
Confidence 99999999999999999843
No 149
>PRK08349 hypothetical protein; Validated
Probab=98.62 E-value=2.7e-07 Score=86.62 Aligned_cols=144 Identities=14% Similarity=0.142 Sum_probs=83.2
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHh----CCcE---EEEcCCh--HHHHHHHHh
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF----GIRI---EYMFPDA--VEVQALVRS 182 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~----gl~i---~~~~p~~--~~~~~~~~~ 182 (463)
++++++|||+||+++ +++.+.+.++..+|+|++ +...+.++++++++ |+++ .++.-.. ......+.+
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g~~v~av~~d~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 78 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRGVEVYPVHFRQD---EKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQGPVFEKLRE 78 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcCCeEEEEEEeCC---HHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhHHHHHHHHh
Confidence 478999999998766 788778888999999985 23344445555554 5654 2222110 111111111
Q ss_pred cCCCCCCccchhhh--hhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCcc
Q 012452 183 KGLFSFYEDGHQEC--CRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN 258 (463)
Q Consensus 183 ~g~~~~~~~~~~~C--c~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~d 258 (463)
.+. ....| |......-+.++.. +.+.+++|...+|.. .-........+. ..++..+.|+++
T Consensus 79 ~~~------~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~a-~~~l~nl~~~~~--------~~~i~i~rPL~~ 143 (198)
T PRK08349 79 LKK------EKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQVA-SQTLDNLMVIST--------ATDLPVLRPLIG 143 (198)
T ss_pred hCC------CCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchHH-HHHHHHHhcccc--------ccCCeEEcCCCC
Confidence 111 11223 44444444444433 567999998877752 111111111111 123557899999
Q ss_pred CcHHHHHHHHHhCCCC
Q 012452 259 VKGNDIWNFLRTMDVP 274 (463)
Q Consensus 259 Wt~~DVw~yi~~~~lp 274 (463)
++.+||..|.++.|++
T Consensus 144 ~~K~eI~~~a~~~g~~ 159 (198)
T PRK08349 144 LDKEEIVKIAKEIGTF 159 (198)
T ss_pred CCHHHHHHHHHHcCCh
Confidence 9999999999999953
No 150
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=98.62 E-value=2.8e-07 Score=82.65 Aligned_cols=111 Identities=20% Similarity=0.205 Sum_probs=72.0
Q ss_pred cEEEEechhHHHHHH-HHHHHcCC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCc
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE 190 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~-~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~ 190 (463)
.++|++|||+||+++ +++.+... ++.++++|.|...++..++++++++. |+++..+.++........... +..-..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~~~~~-l~~~~~ 80 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYGLNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEMKDLQLAR-FKAKVG 80 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHHHHHHHHH-HhcccC
Confidence 389999999998766 78777544 67788999999889999999999999 888766655544332221110 000011
Q ss_pred cchhhhhhchhhhHHHHHHc-cCceEEEeeeccCCc
Q 012452 191 DGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQSP 225 (463)
Q Consensus 191 ~~~~~Cc~~~Kv~Pl~r~l~-~~~~~itG~Rr~ES~ 225 (463)
.....|...+.....+.+.+ +.+++++|...+|..
T Consensus 81 ~p~~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~~ 116 (154)
T cd01996 81 DPCWPCDTAIFTSLYKVALKFGIPLIITGENPAQEF 116 (154)
T ss_pred CCChhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHhc
Confidence 11223444443333333333 457899999999975
No 151
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=98.62 E-value=7.8e-07 Score=86.45 Aligned_cols=162 Identities=18% Similarity=0.157 Sum_probs=97.1
Q ss_pred HHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHHcC--CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHH
Q 012452 101 EIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLTG--RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV 176 (463)
Q Consensus 101 eil~~~~~~~~-~~i~vafSGGKDS~vl-~L~~~~~--~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~ 176 (463)
..|+..+...+ .+++|++|||.||+++ .|+.+.. .++..++++++...++..+.++.+++++|++.+++..... +
T Consensus 12 ~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~-~ 90 (248)
T cd00553 12 LFLRDYLRKSGFKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSSEETREDAKELAEALGIEHVNIDIDPA-V 90 (248)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEeccHHH-H
Confidence 34455555544 5699999999998766 7777754 4688999999987889999999999999999887753322 2
Q ss_pred HHHHHhcCC-CCCCccchhhh--hhchhhhHHHHHHccCc--eEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeE
Q 012452 177 QALVRSKGL-FSFYEDGHQEC--CRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLV 251 (463)
Q Consensus 177 ~~~~~~~g~-~~~~~~~~~~C--c~~~Kv~Pl~r~l~~~~--~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~ 251 (463)
......... ..........| |...+..-+........ ++-||. ++|.. ... + ..+ + .+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-~~E~~---~G~--~---t~~-----g-d~~~ 155 (248)
T cd00553 91 EAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN-KSELL---LGY--F---TKY-----G-DGAA 155 (248)
T ss_pred HHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-HhHHH---hCC--e---ecc-----C-Cccc
Confidence 222211100 00001111112 22223333444444444 333443 33331 111 1 011 0 1234
Q ss_pred EEEeCccCcHHHHHHHHHhCCCCccch
Q 012452 252 KWNPVANVKGNDIWNFLRTMDVPINSL 278 (463)
Q Consensus 252 k~~PI~dWt~~DVw~yi~~~~lp~npL 278 (463)
.++||.+....+|+.+.+..++|.+-+
T Consensus 156 ~i~Pl~~l~K~eV~~la~~~~ip~~i~ 182 (248)
T cd00553 156 DINPIGDLYKTQVRELARYLGVPESII 182 (248)
T ss_pred CccccCCCcHHHHHHHHHHHCchHHHh
Confidence 689999999999999999999876433
No 152
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.61 E-value=3.4e-07 Score=83.63 Aligned_cols=90 Identities=21% Similarity=0.339 Sum_probs=69.3
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------------cHHHHH
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------------QKEYAK 421 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~----------------------------~~~l~~ 421 (463)
.++++||+||++||+.|....+.+.++.+++.+.++.|+.|.+|.. +..+.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~- 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA- 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH-
Confidence 4689999999999999999999999999999865799999987641 13456
Q ss_pred HcCCCCCCCEEEEEeCCCcCeeecCC----------CCCCHHHHHHHHHHh
Q 012452 422 QKLQLGSFPTILFFPKHSSKPIKYPS----------ERRDVDSLMAFVDAL 462 (463)
Q Consensus 422 ~~~~I~~~PTi~~f~~g~~~~~~y~g----------g~~~~~~L~~fI~~l 462 (463)
+.|+|...|++++++++++ +.|.+ +..+.+++.+.|+++
T Consensus 103 ~~~~v~~~P~~~lid~~G~--v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGK--LVYRGRIDDSRPGNDPPVTGRDLRAALDAL 151 (171)
T ss_pred HHcCCCcCCcEEEECCCCe--EEEeecccCCcccccccccHHHHHHHHHHH
Confidence 6889999999999975553 22221 124567788877754
No 153
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.61 E-value=3.7e-07 Score=81.90 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=66.1
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcC-------C-Cc--HHHHHHcCCC-------------
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-------G-DQ--KEYAKQKLQL------------- 426 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d-------~-~~--~~l~~~~~~I------------- 426 (463)
+++++||+|||+||++|+..+|.+.++.++|++.++.|+.|+++ + .+ .+++++++++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 57889999999999999999999999999998778999999862 1 10 2233111111
Q ss_pred -------------CCCCE----EEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 427 -------------GSFPT----ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 427 -------------~~~PT----i~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
..+|+ .+++++.+.....+.| ..+.++|.+.|+++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g-~~~~~~l~~~i~~l 152 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRP-EEPVEEIRPEITAL 152 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECC-CCCHHHHHHHHHHh
Confidence 13675 6666554444556666 68899999988765
No 154
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.58 E-value=1.8e-06 Score=81.18 Aligned_cols=165 Identities=13% Similarity=0.134 Sum_probs=96.4
Q ss_pred EEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH-HHH-HHHhcCC-CCCCc
Q 012452 115 AIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE-VQA-LVRSKGL-FSFYE 190 (463)
Q Consensus 115 ~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~-~~~-~~~~~g~-~~~~~ 190 (463)
+|++|||+||+++ +++.+.+.++..+++|.|....+-.++++++++++|++++++.-.... +.. .+..... .....
T Consensus 2 vv~lSGG~DSs~~~~~~~~~g~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (201)
T TIGR00364 2 VVVLSGGQDSTTCLAIAKDEGYEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSLLKQLGGSALTDESEIPPQKS 81 (201)
T ss_pred EEEeccHHHHHHHHHHHHHcCCcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechhhcccccccccCCCCCCCcCc
Confidence 6899999998766 777777778999999999765667789999999999998766332110 000 0000000 00000
Q ss_pred cc---hhhhh----hchhhhHHHHHHc--cCceEEEeeeccCCccc---ccC-CCceecCCCCcCCcCCCCCeEEEEeCc
Q 012452 191 DG---HQECC----RVRKVRPLRRALK--GLRAWITGQRKDQSPGT---RSE-IPVVQVDPVFEGLEGGVGSLVKWNPVA 257 (463)
Q Consensus 191 ~~---~~~Cc----~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~---Ra~-~~~~~~d~~~~~~~~~~~~~~k~~PI~ 257 (463)
.. .+.+| ......-+..+.. +...+++|.-.+|-... |.. +..+..-... ....++.-++|++
T Consensus 82 ~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~~~~f~~~~~~~~~~----~~~~~~~i~~Pl~ 157 (201)
T TIGR00364 82 NEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKAFNHALNL----GMLTPVKIRAPLM 157 (201)
T ss_pred cccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCCcHHHHHHHHHHHHh----hcCCCeEEEECCc
Confidence 00 11211 1111122222222 56789999988884201 111 0000000000 0012456689999
Q ss_pred cCcHHHHHHHHHhCC---CCccchhccCC
Q 012452 258 NVKGNDIWNFLRTMD---VPINSLHSQGY 283 (463)
Q Consensus 258 dWt~~DVw~yi~~~~---lp~npLy~~Gy 283 (463)
+|+..||-++.+++| +|+.+-+.+..
T Consensus 158 ~~~K~eI~~la~~~g~~~~~~~~t~sC~~ 186 (201)
T TIGR00364 158 DLTKAEIVQLADELGVLDLVIKLTYSCYA 186 (201)
T ss_pred CCCHHHHHHHHHHcCCccccHhhCCcCCC
Confidence 999999999999999 88877776643
No 155
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.56 E-value=2e-07 Score=83.54 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=39.4
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 413 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d 413 (463)
.++++||+|||+||+ |+...|.|+++.++|++.++.|+.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 478999999999999 9999999999999998768999999864
No 156
>PRK13980 NAD synthetase; Provisional
Probab=98.54 E-value=1.5e-06 Score=85.25 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHHc--CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 012452 100 LEIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLT--GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE 175 (463)
Q Consensus 100 ~eil~~~~~~~~-~~i~vafSGGKDS~vl-~L~~~~--~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~ 175 (463)
...|+..+.+++ .+++|++|||.||+++ +|+.+. ..++..++++++...++..+.++.+++++|++++++.-.. .
T Consensus 18 ~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~~~~~v~av~~~~~~~~~~~~~~a~~la~~lgi~~~~i~i~~-~ 96 (265)
T PRK13980 18 VDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSSVSPPEDLEDAELVAEDLGIEYKVIEITP-I 96 (265)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhCccceEEEEeeCCCCCHHHHHHHHHHHHHhCCCeEEEECHH-H
Confidence 345666667766 6799999999998766 777764 3578899999998888899999999999999987763221 1
Q ss_pred HHHHHHhcCCCCCCc-cchhhhhhchhhhHHHHHHccCc--eEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEE
Q 012452 176 VQALVRSKGLFSFYE-DGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVK 252 (463)
Q Consensus 176 ~~~~~~~~g~~~~~~-~~~~~Cc~~~Kv~Pl~r~l~~~~--~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k 252 (463)
+..+... .+.... .....|-+++ ..-+....+... ++-||.+ +|.. . . .+. .+ | .+...
T Consensus 97 ~~~~~~~--~~~~~~~~~~n~~aR~R-~~~L~~~A~~~g~lvlgTgn~-sE~~--~-G--~~t---~~-----g-D~~~~ 158 (265)
T PRK13980 97 VDAFFSA--IPDADRLRVGNIMARTR-MVLLYDYANRENRLVLGTGNK-SELL--L-G--YFT---KY-----G-DGAVD 158 (265)
T ss_pred HHHHHHH--cccccchHHHHHHHHHH-HHHHHHHHhhcCCEEEcCCCH-hHHH--h-C--Ccc---CC-----C-CcccC
Confidence 2222111 111000 0012233332 233444333344 3334433 2211 0 1 110 11 1 12235
Q ss_pred EEeCccCcHHHHHHHHHhCCCC
Q 012452 253 WNPVANVKGNDIWNFLRTMDVP 274 (463)
Q Consensus 253 ~~PI~dWt~~DVw~yi~~~~lp 274 (463)
++||.+++..||+...+..|+|
T Consensus 159 l~Pl~~l~K~eV~~la~~lgip 180 (265)
T PRK13980 159 LNPIGDLYKTQVRELARHLGVP 180 (265)
T ss_pred cccCCCCcHHHHHHHHHHHCch
Confidence 8999999999999999999986
No 157
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=98.53 E-value=1.8e-06 Score=83.96 Aligned_cols=158 Identities=12% Similarity=0.163 Sum_probs=95.2
Q ss_pred HHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHHc-CCCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHH
Q 012452 101 EIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEV 176 (463)
Q Consensus 101 eil~~~~~~~~-~~i~vafSGGKDS~vl-~L~~~~-~~~i~vi~~DTg~~-fpeT~~~~~~~~~~~gl~i~~~~p~~~~~ 176 (463)
+.|+..++..+ .+++|++|||+||+++ +|+.+. +.++..++++.+.. .++..+.++++++++|++.+++.-... +
T Consensus 11 ~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~-~ 89 (250)
T TIGR00552 11 DFLRGYVQKSGAKGVVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSVQTPEQDVQDALALAEPLGINYKNIDIAPI-A 89 (250)
T ss_pred HHHHHHHHHhCCCCEEEECCCcHHHHHHHHHHHHhhCCceEEEEECCccCCCHHHHHHHHHHHHHhCCeEEEEcchHH-H
Confidence 35555555544 5799999999999876 777765 33677777777643 567889999999999999887633221 2
Q ss_pred HHHHH-hcCCCCCCccchhhh--hhchhhhHHHHHHcc--CceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeE
Q 012452 177 QALVR-SKGLFSFYEDGHQEC--CRVRKVRPLRRALKG--LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLV 251 (463)
Q Consensus 177 ~~~~~-~~g~~~~~~~~~~~C--c~~~Kv~Pl~r~l~~--~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~ 251 (463)
..... ........ +....| |...+..-|...... ..++.||.+.+... .. .. .+ + ....
T Consensus 90 ~~~~~~~~~~~~~~-~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E~~~----G~--~t---~~-----g-d~~~ 153 (250)
T TIGR00552 90 ASFQAQTETGDELS-DFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKSELML----GY--FT---KY-----G-DGGC 153 (250)
T ss_pred HHHHHHhccccCCc-hHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHHHhh----CC--ee---cc-----c-CCcc
Confidence 21111 11111000 011112 343455555555543 34666777643321 10 00 00 0 1234
Q ss_pred EEEeCccCcHHHHHHHHHhCCCCc
Q 012452 252 KWNPVANVKGNDIWNFLRTMDVPI 275 (463)
Q Consensus 252 k~~PI~dWt~~DVw~yi~~~~lp~ 275 (463)
.++||.+.+..||+.|.+.+++|.
T Consensus 154 ~i~PL~~l~K~eV~~lA~~~g~p~ 177 (250)
T TIGR00552 154 DIAPIGDLFKTQVYELAKRLNVPE 177 (250)
T ss_pred CccccCCCcHHHHHHHHHHHCccH
Confidence 689999999999999999999854
No 158
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.53 E-value=4.4e-07 Score=74.90 Aligned_cols=67 Identities=33% Similarity=0.610 Sum_probs=61.0
Q ss_pred CCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcC-CCcHHHHHHcCC--CCCCCEEEEEeCCCc
Q 012452 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-GDQKEYAKQKLQ--LGSFPTILFFPKHSS 440 (463)
Q Consensus 371 ~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d-~~~~~l~~~~~~--I~~~PTi~~f~~g~~ 440 (463)
+++++|.||++||++|+.+.|.+.++++.+.. .+.+..+|.. .+ .++. ..|+ +..+|+++++.++..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~-~~~~-~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDEN-PDLA-AEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCC-hHHH-HHHhhhhccCCeEEEEeCcch
Confidence 78999999999999999999999999999986 6899999997 66 7888 8999 999999999988875
No 159
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.51 E-value=6.1e-07 Score=92.11 Aligned_cols=149 Identities=17% Similarity=0.238 Sum_probs=89.0
Q ss_pred EEEEechhHHHHHH-HHHHHcC-CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCc-EEEEcCChHHHH-----HHHHhcCC
Q 012452 114 IAIAFSGAEDVALI-EYAHLTG-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDAVEVQ-----ALVRSKGL 185 (463)
Q Consensus 114 i~vafSGGKDS~vl-~L~~~~~-~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~-i~~~~p~~~~~~-----~~~~~~g~ 185 (463)
|+|+||||.||+++ +++.+.. .++..+++|+|..- +-.+.+++.++++|++ ++++.-. ..+. ..+..+.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~~eV~av~~d~Gq~~-~~~e~a~~~a~~lG~~~~~viD~~-~ef~~~~i~~~i~an~- 77 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADVGQPE-EEIEAIEEKALKLGAKKHVVVDLR-EEFVEDYIFPAIQANA- 77 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCeEEEEEEECCCcc-hhHHHHHHHHHHcCCCEEEEeccH-HHHHHHhhHHHHHhCc-
Confidence 57999999998765 7776654 48999999999643 3358899999999996 6655322 1122 1222221
Q ss_pred CCCCccchh---hhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCccC-
Q 012452 186 FSFYEDGHQ---ECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV- 259 (463)
Q Consensus 186 ~~~~~~~~~---~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dW- 259 (463)
.++.... .+|+-....-+.++.+ +.+++.+|......-..|........+ +.+-.+.|+.+|
T Consensus 78 --~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~rf~~~~~al~----------pel~ViaPlre~~ 145 (385)
T cd01999 78 --LYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVRFELAFYALN----------PDLKIIAPWRDWE 145 (385)
T ss_pred --cccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHHHHHHHHhhC----------CCCEEEcchhhhh
Confidence 1110000 1132222222233332 567898888752111122222211112 235578999999
Q ss_pred --cHHHHHHHHHhCCCCccc
Q 012452 260 --KGNDIWNFLRTMDVPINS 277 (463)
Q Consensus 260 --t~~DVw~yi~~~~lp~np 277 (463)
+.+||-.|.+++|||+.-
T Consensus 146 ~~sr~ev~~~A~~~Gip~~~ 165 (385)
T cd01999 146 FLSREEEIEYAEEHGIPVPV 165 (385)
T ss_pred cCCHHHHHHHHHHcCCCCcc
Confidence 999999999999999854
No 160
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.50 E-value=3.7e-07 Score=89.13 Aligned_cols=107 Identities=18% Similarity=0.205 Sum_probs=79.0
Q ss_pred CCeeecC-hhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCC
Q 012452 351 QNLVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 429 (463)
Q Consensus 351 ~~V~~lt-~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~ 429 (463)
..|.+++ +++|-+.+.....+..|||.||-+.++.|..|...|..||.+|.. ++|++|..+.. + +. .+|.+..+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~~~-~-~~-~~f~~~~L 199 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRASKC-P-AS-ENFPDKNL 199 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEECGC-C-TT-TTS-TTC-
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehhcc-C-cc-cCCcccCC
Confidence 3688885 578888776444466899999999999999999999999999988 99999999876 4 55 79999999
Q ss_pred CEEEEEeCCCcC-----eeecCCCCCCHHHHHHHHHHh
Q 012452 430 PTILFFPKHSSK-----PIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 430 PTi~~f~~g~~~-----~~~y~gg~~~~~~L~~fI~~l 462 (463)
|||++|++|..+ .....|...+.++|..||.++
T Consensus 200 PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 200 PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 999999999742 223335567888999998754
No 161
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.49 E-value=3.9e-07 Score=84.06 Aligned_cols=86 Identities=9% Similarity=-0.019 Sum_probs=62.3
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEE------EEEEcCCC----------------------------
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKV------GKFRADGD---------------------------- 415 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f------~~VD~d~~---------------------------- 415 (463)
.+|.+||+|||.||++|+...|.+++++++ ++.+ ..||.|+.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 599999999999999999999999999543 2444 55665532
Q ss_pred cHHHHHHcCCCCCCCEE-EEEeCCCcCeeecCCCCCCHHHHHHHHHH
Q 012452 416 QKEYAKQKLQLGSFPTI-LFFPKHSSKPIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 416 ~~~l~~~~~~I~~~PTi-~~f~~g~~~~~~y~gg~~~~~~L~~fI~~ 461 (463)
+..+. ..|++.++|+. +++++.+++...+.| ..+.+++.+++..
T Consensus 134 ~g~v~-~~~gv~~~P~T~fVIDk~GkVv~~~~G-~l~~ee~e~~~~l 178 (184)
T TIGR01626 134 KGAVK-NAWQLNSEDSAIIVLDKTGKVKFVKEG-ALSDSDIQTVISL 178 (184)
T ss_pred cchHH-HhcCCCCCCceEEEECCCCcEEEEEeC-CCCHHHHHHHHHH
Confidence 02345 67899999877 677666654556666 6777777665543
No 162
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.48 E-value=1.2e-06 Score=90.19 Aligned_cols=148 Identities=17% Similarity=0.208 Sum_probs=91.6
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHHHhcCCCCCCc
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVRSKGLFSFYE 190 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl-~i~~~~p~~~~~~~~~~~~g~~~~~~ 190 (463)
+++|+||||.||+++ +++.+.+.++..+++|+|.. .+-.+.+++.++.+|+ +++++.-.. ++...+..+....
T Consensus 1 kVvla~SGGlDSsvll~~l~e~g~~V~av~id~Gq~-~~e~~~a~~~a~~lGi~~~~viD~~~----ef~~~~~~~~i~~ 75 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREKGYEVIAYTADVGQP-EEDIDAIPEKALEYGAENHYTIDARE----EFVKDYGFAAIQA 75 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEEEecCCC-hHHHHHHHHHHHHhCCCeEEEEeCHH----HHHHhhchhhhcC
Confidence 488999999998765 77777787899999999943 6678889999999997 676663221 2222222222111
Q ss_pred cchhhhh-hchhh---hH-----HHHHHc--cCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCcc-
Q 012452 191 DGHQECC-RVRKV---RP-----LRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN- 258 (463)
Q Consensus 191 ~~~~~Cc-~~~Kv---~P-----l~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~d- 258 (463)
+.-+|| ..++. +| +.+..+ +.++++.|.........|...+..... +++-.+.|+.+
T Consensus 76 -n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~gnDqvrf~r~~~~~~----------~~l~viaPLrew 144 (394)
T TIGR00032 76 -NAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQERFERSIRLLN----------PDLKVIAPWRDL 144 (394)
T ss_pred -CccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHhC----------CCCeEECchhhc
Confidence 112233 22221 11 122222 567899998554321113222221112 24567999954
Q ss_pred -CcHHHHHHHHHhCCCCcc
Q 012452 259 -VKGNDIWNFLRTMDVPIN 276 (463)
Q Consensus 259 -Wt~~DVw~yi~~~~lp~n 276 (463)
.+.+|+-.|++++|+|+.
T Consensus 145 ~l~r~ei~~ya~~~Gip~~ 163 (394)
T TIGR00032 145 NFTREEEIEYAIQCGIPYP 163 (394)
T ss_pred CCCHHHHHHHHHHcCCCee
Confidence 699999999999999884
No 163
>PLN02347 GMP synthetase
Probab=98.47 E-value=2.7e-06 Score=91.10 Aligned_cols=175 Identities=15% Similarity=0.208 Sum_probs=105.9
Q ss_pred HHHHHHHHHcC--CcEEEEechhHHHHHH-HHHHH-cCCCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 012452 101 EIMDRALEKFG--NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVE 175 (463)
Q Consensus 101 eil~~~~~~~~--~~i~vafSGGKDS~vl-~L~~~-~~~~i~vi~~DTg~~-fpeT~~~~~~~~~~~gl~i~~~~p~~~~ 175 (463)
+.++.+.+..+ ++++|++|||.||+++ .|+++ .+.++..+|+|+|.. ..|..+.++.+++++|++++++.-..
T Consensus 217 ~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~vvd~~e-- 294 (536)
T PLN02347 217 EQIELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCVDASE-- 294 (536)
T ss_pred HHHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEEEeCcH--
Confidence 44555555555 4599999999998877 78888 577899999999975 55777777889999999998874332
Q ss_pred HHHHHHh-cCCCCCCccchhhh--hhchhhhHHHHHH---c---cC--ceEEEeeeccCCc--ccccCCC---ceecCCC
Q 012452 176 VQALVRS-KGLFSFYEDGHQEC--CRVRKVRPLRRAL---K---GL--RAWITGQRKDQSP--GTRSEIP---VVQVDPV 239 (463)
Q Consensus 176 ~~~~~~~-~g~~~~~~~~~~~C--c~~~Kv~Pl~r~l---~---~~--~~~itG~Rr~ES~--~~Ra~~~---~~~~d~~ 239 (463)
.++.. .|. - +..+.| |...-++-+.+.. . +. +.++.|+-.++-. +.|-... ...+...
T Consensus 295 --~fl~~l~~~---~-~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~es~~r~g~~~~~~~~ik~h 368 (536)
T PLN02347 295 --RFLSKLKGV---T-DPEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTIKSH 368 (536)
T ss_pred --HHHhhCCCC---C-ChHHhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccccccCCCCCccccccceeee
Confidence 12222 332 2 222233 4332224333333 1 22 4677898666532 1332210 0000111
Q ss_pred Cc--CCcCCCCCeEEEEeCccCcHHHHHHHHHhCCCCccchhccCCc
Q 012452 240 FE--GLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYI 284 (463)
Q Consensus 240 ~~--~~~~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~ 284 (463)
++ +.... -..--+.||.+++.+||.+..++.|+|.+-++++=|+
T Consensus 369 hn~~~l~~~-~~~~ii~PL~~l~K~eVR~la~~lgl~~~~~~~~p~p 414 (536)
T PLN02347 369 HNVGGLPKD-MKLKLIEPLKLLFKDEVRKLGRLLGVPEAFLKRHPFP 414 (536)
T ss_pred cccccChHH-HHCccccchhhCcHHHHHHHHHHcCCCHHHhcCCCcC
Confidence 10 00000 0122478999999999999999999987667766443
No 164
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.45 E-value=4.8e-06 Score=79.76 Aligned_cols=178 Identities=13% Similarity=0.146 Sum_probs=103.1
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCc-EEEEcCChHH-HHH-HHHhc--CCC
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDAVE-VQA-LVRSK--GLF 186 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~-i~~~~p~~~~-~~~-~~~~~--g~~ 186 (463)
+++|+||||.||+++ .++.+...++..+++|.|.....-++.++++++++|++ .+++.-+.-. +.. .+... ..+
T Consensus 3 kvvVl~SGG~DSt~~l~~a~~~~~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s~Lt~~~~~~p 82 (231)
T PRK11106 3 RAVVVFSGGQDSTTCLIQALQQYDEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVSSLTRDSIPVP 82 (231)
T ss_pred cEEEEeeCcHHHHHHHHHHHhcCCeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccccCC
Confidence 589999999998776 66666655789999999987788889999999999996 6554322100 000 00000 001
Q ss_pred CCC---ccchhhhhhchh--hhHHHHHH---ccCceEEEeeeccCCcccccCCCceecCCCCcCC--cCCCCCeEEEEeC
Q 012452 187 SFY---EDGHQECCRVRK--VRPLRRAL---KGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGL--EGGVGSLVKWNPV 256 (463)
Q Consensus 187 ~~~---~~~~~~Cc~~~K--v~Pl~r~l---~~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~--~~~~~~~~k~~PI 256 (463)
... ......|---|+ ...+...+ .+.+.+++|...++..+-|-..+-+-- .++.. .+...++--..|+
T Consensus 83 ~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~~~YpDcr~~Fi~--A~~~~~~~~~~~~i~I~aPl 160 (231)
T PRK11106 83 DYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVK--ALNHAVSLGMAKDIRFETPL 160 (231)
T ss_pred ccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcCCCCCCCCHHHHH--HHHHHHHhccCCCcEEEecC
Confidence 000 011223322222 22222211 266789999999884334544211100 00000 0001235567999
Q ss_pred ccCcHHHHHHHHHhCC-CCc--cchhccCCc---ccCcccCCc
Q 012452 257 ANVKGNDIWNFLRTMD-VPI--NSLHSQGYI---SIGCEPCTR 293 (463)
Q Consensus 257 ~dWt~~DVw~yi~~~~-lp~--npLy~~Gy~---siGC~~Ct~ 293 (463)
.+|+..||+..-++.+ +|+ .-=|+| |. .-+|=.|..
T Consensus 161 ~~lsK~eI~~l~~~lg~v~~~~~~T~SC-y~g~~g~~CG~C~s 202 (231)
T PRK11106 161 MWLNKAETWALADYYGQLDLVRHETLTC-YNGIKGDGCGHCAA 202 (231)
T ss_pred CCCCHHHHHHHHHHcCCcccccCceeec-cCcCCCCCCCCCHH
Confidence 9999999999999999 987 544444 22 126666654
No 165
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.45 E-value=7.7e-07 Score=68.56 Aligned_cols=69 Identities=19% Similarity=0.367 Sum_probs=53.3
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHH----HHHHcCCCCCCCEEEEEeCCCcCeeecCCCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQLGSFPTILFFPKHSSKPIKYPSERR 450 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~----l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~ 450 (463)
+..|+++||++|+.+.+.|++. ++.+..+|++.+ .. +. +.+++.++|++++. |+ . ..| .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~-~~~~~~~~-~~~~~~~vP~~~~~--~~--~--~~g--~ 64 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-------GIAFEEIDVEKD-SAAREEVL-KVLGQRGVPVIVIG--HK--I--IVG--F 64 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-------CCeEEEEeccCC-HHHHHHHH-HHhCCCcccEEEEC--CE--E--Eee--C
Confidence 5689999999999999888652 588999999877 43 45 67999999999875 43 2 333 4
Q ss_pred CHHHHHHHHH
Q 012452 451 DVDSLMAFVD 460 (463)
Q Consensus 451 ~~~~L~~fI~ 460 (463)
+.+.|.++|+
T Consensus 65 ~~~~i~~~i~ 74 (74)
T TIGR02196 65 DPEKLDQLLE 74 (74)
T ss_pred CHHHHHHHhC
Confidence 7788888874
No 166
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.44 E-value=1.6e-06 Score=89.22 Aligned_cols=144 Identities=14% Similarity=0.141 Sum_probs=91.3
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCC-cHHHHHHHHHHHHHh---CCcEEEEcCChHHHHHHHHhcCCCC
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL-NPETYRFFDEVEKHF---GIRIEYMFPDAVEVQALVRSKGLFS 187 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~-fpeT~~~~~~~~~~~---gl~i~~~~p~~~~~~~~~~~~g~~~ 187 (463)
++++++|||.||+++ +++.+.+.++..+|+|++.. ..+..+.++.+++++ +.++..+.-+.......+....
T Consensus 174 kvlvllSGGiDS~vaa~ll~krG~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v~~~~~~~~i~~~~--- 250 (371)
T TIGR00342 174 KVLALLSGGIDSPVAAFMMMKRGCRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVFDFTDVQEEIIHII--- 250 (371)
T ss_pred eEEEEecCCchHHHHHHHHHHcCCeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEEeCHHHHHHHHhcC---
Confidence 699999999999776 88888888899999998854 357888899999988 4433322222222222222121
Q ss_pred CCccchhhhhhchhhhHHHHHH---c--cCceEEEeeeccCCc-ccccCCCceecCCCCcCCcCCCCCeEEEEeCccCcH
Q 012452 188 FYEDGHQECCRVRKVRPLRRAL---K--GLRAWITGQRKDQSP-GTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKG 261 (463)
Q Consensus 188 ~~~~~~~~Cc~~~Kv~Pl~r~l---~--~~~~~itG~Rr~ES~-~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~ 261 (463)
....+|..+|..-++-+. . +.+.++||.-.+|-. .++.++...... ....-+.||+.++.
T Consensus 251 ----~~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~asqtl~nl~~i~~~----------~~~~I~rPLi~~~K 316 (371)
T TIGR00342 251 ----PEGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQVASQTLENLRVIQAV----------SNTPILRPLIGMDK 316 (371)
T ss_pred ----CCCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhhhccHHHHHHHHhcc----------CCCCEEeCCCCCCH
Confidence 112355555543222222 1 567999999988843 122332221100 12335789999999
Q ss_pred HHHHHHHHhCCC
Q 012452 262 NDIWNFLRTMDV 273 (463)
Q Consensus 262 ~DVw~yi~~~~l 273 (463)
+||.+|.++.|.
T Consensus 317 ~EIi~~a~~iG~ 328 (371)
T TIGR00342 317 EEIIELAKEIGT 328 (371)
T ss_pred HHHHHHHHHhCC
Confidence 999999999993
No 167
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.43 E-value=1.1e-06 Score=90.23 Aligned_cols=148 Identities=22% Similarity=0.296 Sum_probs=91.5
Q ss_pred CcEEEEechhHHHHHH-HHHHHc-CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHH-----HHHHhc
Q 012452 112 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQ-----ALVRSK 183 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~~-~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl-~i~~~~p~~~~~~-----~~~~~~ 183 (463)
++++|+||||.||+++ +++.+. +.++..+++|+|.. +-++.++++++++|+ +++++.- ...+. ..+..+
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~lG~eViavt~d~Gq~--~dle~a~~~A~~lGi~~~~viD~-~~ef~~~~i~~~i~~n 79 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETYGCEVIAFTADVGQG--EELEPIREKALKSGASEIYVEDL-REEFVRDYVFPAIRAN 79 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEecCCH--HHHHHHHHHHHHcCCCeEEEEcC-HHHHHHHhHHHHHHhC
Confidence 4699999999998766 777765 78899999999975 567788999999998 4554421 11222 222222
Q ss_pred CCC-CCCccchhhhhhchhhhHHHHHHc--cCceEEEeeec---cCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCc
Q 012452 184 GLF-SFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRK---DQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA 257 (463)
Q Consensus 184 g~~-~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr---~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~ 257 (463)
... ..+...... |+-.-..-+.++.+ +.+++.+|... ||+ |........+| ..-.+.|+.
T Consensus 80 ~~y~g~ypl~~~l-cr~~i~~~l~~~A~~~G~~~IA~G~t~kGnDq~---rf~~g~~al~p----------el~VisPlr 145 (399)
T PRK00509 80 ALYEGKYPLGTAL-ARPLIAKKLVEIARKEGADAVAHGCTGKGNDQV---RFELGIAALAP----------DLKVIAPWR 145 (399)
T ss_pred hHhcCcCCCchHH-HHHHHHHHHHHHHHHcCCCEEEeCCCcCCCCHH---HHHHHHHHhCC----------CCeeecchh
Confidence 110 001111112 22222333444433 55688889864 333 33222212232 234689999
Q ss_pred cC---cHHHHHHHHHhCCCCcc
Q 012452 258 NV---KGNDIWNFLRTMDVPIN 276 (463)
Q Consensus 258 dW---t~~DVw~yi~~~~lp~n 276 (463)
+| +.+|+-+|.+++|||+.
T Consensus 146 e~~~~tK~eir~~A~~~Gipv~ 167 (399)
T PRK00509 146 EWDLKSREELIAYAEEHGIPIP 167 (399)
T ss_pred hcCCCCHHHHHHHHHHcCCCCC
Confidence 99 99999999999999984
No 168
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.43 E-value=2e-06 Score=88.14 Aligned_cols=145 Identities=14% Similarity=0.229 Sum_probs=93.7
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhC-------CcEEEEcCCh-HHHHHHHHhc
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFG-------IRIEYMFPDA-VEVQALVRSK 183 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~g-------l~i~~~~p~~-~~~~~~~~~~ 183 (463)
++++++|||+||.|+ +|+.+.+.++..+|+|+| ++..+.++++++.++ ++++++.... ..+...+...
T Consensus 182 kvlvllSGGiDSpVAa~ll~krG~~V~~v~f~~g---~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~~~~~v~~~i~~~ 258 (381)
T PRK08384 182 KVVALLSGGIDSPVAAFLMMKRGVEVIPVHIYMG---EKTLEKVRKIWNQLKKYHYGGKAELIVVKPQERERIIQKLKEL 258 (381)
T ss_pred cEEEEEeCChHHHHHHHHHHHcCCeEEEEEEEeC---HHHHHHHHHHHHHhcccccCCcceEEEEChHHHHHHHHHHHHh
Confidence 699999999999776 888888999999999988 677888888988876 4455553321 1233333222
Q ss_pred CCCCCCccchhhh--hhchhhhHHHHHHc--cCceEEEeeeccCCcc-cccCCCceecCCCCcCCcCCCCCeEEEEeCcc
Q 012452 184 GLFSFYEDGHQEC--CRVRKVRPLRRALK--GLRAWITGQRKDQSPG-TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN 258 (463)
Q Consensus 184 g~~~~~~~~~~~C--c~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~-~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~d 258 (463)
... + ..| |......-+.+..+ +.++++||.-.+|-.. +=.++...... ..+..+.||..
T Consensus 259 ~~~-----~-~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqvaSQtl~Nl~~i~~~----------~~lpilRPLi~ 322 (381)
T PRK08384 259 KKE-----N-YTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQVASQTLENMYIVSQA----------SDLPIYRPLIG 322 (381)
T ss_pred ccC-----C-CchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhHHHHHHHHHHHHhcc----------CCCcEEeeCCC
Confidence 111 1 134 33333334444333 5568999988776320 10122221111 23568999999
Q ss_pred CcHHHHHHHHHhCC-CCcc
Q 012452 259 VKGNDIWNFLRTMD-VPIN 276 (463)
Q Consensus 259 Wt~~DVw~yi~~~~-lp~n 276 (463)
++.+||-+|.++.| .++.
T Consensus 323 ~dK~EIi~~Ar~iGT~~~s 341 (381)
T PRK08384 323 MDKEEIVAIAKTIGTFELS 341 (381)
T ss_pred CCHHHHHHHHHHcCCcccc
Confidence 99999999999999 6654
No 169
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.43 E-value=9.9e-07 Score=64.50 Aligned_cols=61 Identities=39% Similarity=0.776 Sum_probs=51.1
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH--HcCCCCCCCEEEEEeCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK--QKLQLGSFPTILFFPKH 438 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~--~~~~I~~~PTi~~f~~g 438 (463)
|+.||++||++|+.+.+.+.++ +... .++.+..+|++.. .+... ..+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN-KGVKFEAVDVDED-PALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC-CCcEEEEEEcCCC-hHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 3333 3799999999988 65552 27899999999999877
No 170
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.42 E-value=1.2e-06 Score=90.11 Aligned_cols=148 Identities=20% Similarity=0.270 Sum_probs=88.1
Q ss_pred CcEEEEechhHHHHHH-HHHHHc-CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCC
Q 012452 112 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFY 189 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~~-~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~ 189 (463)
++++|+||||.||+++ +++.+. +.++..+++|+|. -.+-++.++++++++|++..++..-..++.+ ..-.+.+.
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~G~eViav~id~Gq-~~~el~~a~~~A~~lGi~~~~v~dl~~ef~~---~~i~p~i~ 81 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENYGCEVVCFTADVGQ-GIEELEGLEAKAKASGAKQLVVKDLREEFVR---DYIFPCLR 81 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhhCCeEEEEEEECCC-ChHHHHHHHHHHHHcCCCEEEEEeCHHHHHH---hhcCHHHH
Confidence 4699999999998766 677665 7789999999996 3466788999999999974333222222221 11111111
Q ss_pred ccchhhhhhchhh---hH-----HHHHHc--cCceEEEeeec---cCCcccccCCCceecCCCCcCCcCCCCCeEEEEeC
Q 012452 190 EDGHQECCRVRKV---RP-----LRRALK--GLRAWITGQRK---DQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV 256 (463)
Q Consensus 190 ~~~~~~Cc~~~Kv---~P-----l~r~l~--~~~~~itG~Rr---~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI 256 (463)
.+....-|..+|. +| +.+..+ +.+++..|... ||+ |........+| .+-.+.|+
T Consensus 82 ~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq~---rf~~~~~al~p----------el~ViaPl 148 (404)
T PLN00200 82 ANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQV---RFELTFFALNP----------ELKVVAPW 148 (404)
T ss_pred cCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCCCcHH---HHHHHHHHhCC----------CCeeeCch
Confidence 1111011222222 11 112222 55688878764 333 32222212222 24468999
Q ss_pred ccCc---HHHHHHHHHhCCCCcc
Q 012452 257 ANVK---GNDIWNFLRTMDVPIN 276 (463)
Q Consensus 257 ~dWt---~~DVw~yi~~~~lp~n 276 (463)
.+|. .+|+.+|.+++|||+.
T Consensus 149 re~~~~~r~e~~~~A~~~Gipv~ 171 (404)
T PLN00200 149 REWDIKGREDLIEYAKKHNIPVP 171 (404)
T ss_pred hhcCCCCHHHHHHHHHHcCCCCC
Confidence 9995 9999999999999863
No 171
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.39 E-value=2.8e-06 Score=80.73 Aligned_cols=85 Identities=22% Similarity=0.299 Sum_probs=69.2
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC----------cHHHHHHcCCCCCCCEEEEEeCCC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPKHS 439 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~----------~~~l~~~~~~I~~~PTi~~f~~g~ 439 (463)
.++.-|++||.+.|++|+.+.|++..++++| ++.+..|++|.. +..++ ++|+|..+|+++++..+.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~~fp~~~~~~g~~-~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIPSFPNPRPDPGQA-KRLGVKVTPALFLVNPNT 194 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCcCCCCCCCCHHHH-HHcCCCcCCEEEEEECCC
Confidence 4788899999999999999999999999999 478888888742 27888 899999999999997776
Q ss_pred cCeeecCCCCCCHHHHHHH
Q 012452 440 SKPIKYPSERRDVDSLMAF 458 (463)
Q Consensus 440 ~~~~~y~gg~~~~~~L~~f 458 (463)
.......-|..+.++|.+=
T Consensus 195 ~~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 195 KKWYPVSQGFMSLDELEDR 213 (215)
T ss_pred CeEEEEeeecCCHHHHHHh
Confidence 4333333347899988763
No 172
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.38 E-value=2.1e-06 Score=79.56 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=37.8
Q ss_pred CCCcE-EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcC
Q 012452 370 RQEPW-LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 413 (463)
Q Consensus 370 ~~k~v-lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d 413 (463)
.++++ |+.+||+||++|+..+|.|+++.++|++.++.|+.|+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 46654 456699999999999999999999998767999999874
No 173
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.37 E-value=3.9e-06 Score=85.41 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=77.3
Q ss_pred cEEEEechhHHHHHH-HHHH-HcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCc
Q 012452 113 DIAIAFSGAEDVALI-EYAH-LTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE 190 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~-~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~ 190 (463)
.++|++|||+||+++ +++. ..+.++.++++|.|...+...+.++.+++++|++++.+.++...+....... +.. ..
T Consensus 61 D~iV~lSGGkDSs~la~ll~~~~gl~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~~~~-~~~-~~ 138 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPETFRKLQRAY-FKK-VG 138 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHHHhCCceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHH-Hhc-cC
Confidence 499999999998766 6764 4566677789999998888889999999999999999988866544332211 100 11
Q ss_pred cchhhhhhchhhhHHHHHHc-cCceEEEeeeccCC
Q 012452 191 DGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQS 224 (463)
Q Consensus 191 ~~~~~Cc~~~Kv~Pl~r~l~-~~~~~itG~Rr~ES 224 (463)
.....|.......+.+.+.+ +..++++|...+|-
T Consensus 139 ~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE~ 173 (343)
T TIGR03573 139 DPEWPQDHAIFASVYQVALKFNIPLIIWGENIAEE 173 (343)
T ss_pred CCchhhhhHHHHHHHHHHHHhCCCEEEeCCCHHHh
Confidence 12234555555555555555 46799999998863
No 174
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=6e-06 Score=72.58 Aligned_cols=90 Identities=19% Similarity=0.342 Sum_probs=71.3
Q ss_pred cCCCCcEEEEEecCCChhHHHhHHHHH---HHHHHhcCCCeEEEEEEcCCCc---------------HHHHHHcCCCCCC
Q 012452 368 DHRQEPWLVVLYAPWCQFCQAMEGSYV---ELADKLAGNGVKVGKFRADGDQ---------------KEYAKQKLQLGSF 429 (463)
Q Consensus 368 ~~~~k~vlV~FyA~wC~~C~~~~p~l~---~la~~~~~~~v~f~~VD~d~~~---------------~~l~~~~~~I~~~ 429 (463)
...++..+++|-++.|++|..|...+. ++.+.+.+ ++.++.+|+...+ .+++ +.|.|+++
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa-~kf~vrst 116 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLFKVGDKEEKMSTEELA-QKFAVRST 116 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEeecCceeeeecHHHHH-HHhccccC
Confidence 346899999999999999999998774 56666776 7999999875431 5899 99999999
Q ss_pred CEEEEEeCCCcCeeecCCCCCCHHHHHHHHH
Q 012452 430 PTILFFPKHSSKPIKYPSERRDVDSLMAFVD 460 (463)
Q Consensus 430 PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~ 460 (463)
||++||++.++.....+| ..+.+++...++
T Consensus 117 PtfvFfdk~Gk~Il~lPG-Y~ppe~Fl~vlk 146 (182)
T COG2143 117 PTFVFFDKTGKTILELPG-YMPPEQFLAVLK 146 (182)
T ss_pred ceEEEEcCCCCEEEecCC-CCCHHHHHHHHH
Confidence 999999776553445555 788888766554
No 175
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.36 E-value=1.7e-06 Score=75.84 Aligned_cols=86 Identities=10% Similarity=0.105 Sum_probs=64.8
Q ss_pred CCCcEEEEEe-cCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------cHHHHHHcCCCCC
Q 012452 370 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLGS 428 (463)
Q Consensus 370 ~~k~vlV~Fy-A~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~--------------------~~~l~~~~~~I~~ 428 (463)
.+++++|+|| +.||+.|....+.+.++.+++.+.++.++.|..|.. +..+. +.|++..
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~ 100 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLA-KAYGVWG 100 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHH-HHhCCcc
Confidence 4789999999 589999999999999999999766788888876532 14567 7788888
Q ss_pred C---------CEEEEEeCCCcCeeecCCCCCCHHHHHH
Q 012452 429 F---------PTILFFPKHSSKPIKYPSERRDVDSLMA 457 (463)
Q Consensus 429 ~---------PTi~~f~~g~~~~~~y~gg~~~~~~L~~ 457 (463)
. |++++++++++....+.| ....+++.+
T Consensus 101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g-~~~~~~~~~ 137 (140)
T cd03017 101 EKKKKYMGIERSTFLIDPDGKIVKVWRK-VKPKGHAEE 137 (140)
T ss_pred ccccccCCcceeEEEECCCCEEEEEEec-CCccchHHH
Confidence 7 899999865544555555 345555544
No 176
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.35 E-value=7.8e-06 Score=84.05 Aligned_cols=147 Identities=16% Similarity=0.217 Sum_probs=89.0
Q ss_pred CcEEEEechhHHHHHH-HHHHHc-CC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH-----HHHHhc
Q 012452 112 NDIAIAFSGAEDVALI-EYAHLT-GR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ-----ALVRSK 183 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~~-~~-~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~-----~~~~~~ 183 (463)
++++|+||||.||+++ +++++. +. ++.++++|+|. .++-.+.++++++.+|++++++.-.. .+. ..+..+
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e~~g~~~Viav~vd~g~-~~~e~~~a~~~a~~lGi~~~vvd~~e-ef~~~~i~~~i~~n 80 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKEKYGYDEVITVTVDVGQ-PEEEIKEAEEKAKKLGDKHYTIDAKE-EFAKDYIFPAIKAN 80 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHHhcCCCEEEEEEEECCC-ChHHHHHHHHHHHHcCCCEEEEeCHH-HHHHHHHHHHHHhC
Confidence 4599999999998766 777665 64 79999999984 35567789999999999988764321 122 122222
Q ss_pred CCCCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeecc---CCcccccCCCceecCCCCcCCcCCCCCeEEEEeCcc
Q 012452 184 GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKD---QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN 258 (463)
Q Consensus 184 g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~---ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~d 258 (463)
....-|...... |+...-.-+.+..+ +.+++.+|.... |.. -|..+... ++--+.|+.+
T Consensus 81 ~~~~gYpl~~~~-cR~~i~~~l~e~A~e~G~~~IA~G~t~~gnDq~r-fe~~~~a~--------------~l~viaP~re 144 (394)
T PRK13820 81 ALYEGYPLGTAL-ARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQLR-FEAVFRAS--------------DLEVIAPIRE 144 (394)
T ss_pred ccccCCcCcHHH-HHHHHHHHHHHHHHHcCCCEEEECCCCCcchHHH-HHHhhHhh--------------cCeeeCchhc
Confidence 110000001111 32222333333333 557899998432 221 11111111 1224578888
Q ss_pred --CcHHHHHHHHHhCCCCcc
Q 012452 259 --VKGNDIWNFLRTMDVPIN 276 (463)
Q Consensus 259 --Wt~~DVw~yi~~~~lp~n 276 (463)
++.+||-+|.++++||+.
T Consensus 145 ~~ltK~ei~~ya~~~gip~~ 164 (394)
T PRK13820 145 LNLTREWEIEYAKEKGIPVP 164 (394)
T ss_pred cCCCHHHHHHHHHHcCCCCC
Confidence 599999999999999984
No 177
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.33 E-value=4.5e-06 Score=85.63 Aligned_cols=146 Identities=18% Similarity=0.265 Sum_probs=93.0
Q ss_pred CcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCc-EEEEcCChHHHHHHHH--------
Q 012452 112 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDAVEVQALVR-------- 181 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~-i~~~~p~~~~~~~~~~-------- 181 (463)
.+++|+||||-||+++ .++.+.+.++..+++|.|....+=++.++++++++|+. .+++.-.......++.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e~G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~vi~p~i~aNa~ 82 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQERGYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVWAGEG 82 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHHcCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHHHHHHhcchh
Confidence 4699999999998766 77777777899999999987677788899999999984 6665333222222221
Q ss_pred hcCCCCCCccchhhhh-hchhhhHHHHHHc--cCceEEEeee--ccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeC
Q 012452 182 SKGLFSFYEDGHQECC-RVRKVRPLRRALK--GLRAWITGQR--KDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV 256 (463)
Q Consensus 182 ~~g~~~~~~~~~~~Cc-~~~Kv~Pl~r~l~--~~~~~itG~R--r~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI 256 (463)
..|.... -|| +-.|..-+.+..+ +.+++.+|.. .++- .|........+ .+-.+.|+
T Consensus 83 y~G~yPl------~~~nR~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq--~rfrpg~~Al~-----------el~ViaPl 143 (400)
T PRK04527 83 YQGQYPL------LVSDRYLIVDAALKRAEELGTRIIAHGCTGMGNDQ--VRFDLAVKALG-----------DYQIVAPI 143 (400)
T ss_pred hcCCCCC------ccccHHHHHHHHHHHHHHCCCCEEEecCcCCCCch--hhccHHHHHhh-----------cCCccchH
Confidence 1121111 122 2234445555443 5678999985 2221 23332221111 12257899
Q ss_pred ccC------cHHHHHHHHHhCCCCcc
Q 012452 257 ANV------KGNDIWNFLRTMDVPIN 276 (463)
Q Consensus 257 ~dW------t~~DVw~yi~~~~lp~n 276 (463)
.+| ..+|--+|+++||||+.
T Consensus 144 re~~~~k~~~R~~~i~ya~~~gipv~ 169 (400)
T PRK04527 144 REIQKEHTQTRAYEQKYLEERGFGVR 169 (400)
T ss_pred HHhcCcccccHHHHHHHHHHcCCCCC
Confidence 998 46777999999999984
No 178
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.33 E-value=4.6e-06 Score=86.46 Aligned_cols=156 Identities=14% Similarity=0.184 Sum_probs=96.2
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCC-CCcHHHHHHHHHHHHHhC-----CcEEEEcCChHHHHHHHHhcCC
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTG-RLNPETYRFFDEVEKHFG-----IRIEYMFPDAVEVQALVRSKGL 185 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg-~~fpeT~~~~~~~~~~~g-----l~i~~~~p~~~~~~~~~~~~g~ 185 (463)
++++++|||.||+++ +++.+.+.++..+|+++. +.-+...+.+.+++++++ ++++++.-. .....+...
T Consensus 178 kvvvllSGGiDS~vaa~l~~k~G~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~~--~~~~~i~~~-- 253 (394)
T PRK01565 178 KALLLLSGGIDSPVAGYLAMKRGVEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPFT--EIQEEIKKK-- 253 (394)
T ss_pred CEEEEECCChhHHHHHHHHHHCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEECH--HHHHHHhhc--
Confidence 589999999999877 787777878888888773 444666677888877774 777666322 222222221
Q ss_pred CCCCccchhhhhhchhhhHH---HHHHc--cCceEEEeeeccCCc-ccccCCCceecCCCCcCCcCCCCCeEEEEeCccC
Q 012452 186 FSFYEDGHQECCRVRKVRPL---RRALK--GLRAWITGQRKDQSP-GTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV 259 (463)
Q Consensus 186 ~~~~~~~~~~Cc~~~Kv~Pl---~r~l~--~~~~~itG~Rr~ES~-~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dW 259 (463)
.+ .+.+|...|..-+ ..... +..+++||...+|-. .++.++..+ +.. ..+.-++||+.+
T Consensus 254 --~~---~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~sqt~~~l~~i--~~~--------~~~~V~rPLig~ 318 (394)
T PRK01565 254 --VP---ESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQTLESMYAI--NAV--------TNLPVLRPLIGM 318 (394)
T ss_pred --CC---CceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHHHHHH--hhc--------cCcEEEECCCCC
Confidence 11 1234444443322 22222 567999999987753 134433222 110 134568999999
Q ss_pred cHHHHHHHHHhCCCCccchhccCCcccCcccCCc
Q 012452 260 KGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTR 293 (463)
Q Consensus 260 t~~DVw~yi~~~~lp~npLy~~Gy~siGC~~Ct~ 293 (463)
+..||..+-++.|+. ++..+ ++-.| ||+
T Consensus 319 ~K~EI~~lAr~iG~~--~~s~~--p~~~c--c~~ 346 (394)
T PRK01565 319 DKEEIIEIAKEIGTY--DISIL--PYEDC--CTI 346 (394)
T ss_pred CHHHHHHHHHHhCCH--HHhcC--CCcCe--eee
Confidence 999999999999942 23222 34457 775
No 179
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.32 E-value=2.7e-06 Score=66.44 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=49.8
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHc-----CCCCCCCEEEEEeCCCcCeeecCCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQK-----LQLGSFPTILFFPKHSSKPIKYPSER 449 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~-----~~I~~~PTi~~f~~g~~~~~~y~gg~ 449 (463)
++.||++||++|+.+.+.|.++ ++.+-.+|++++ .... .. +++.++|++ ++.+|. .+. .
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~~~-~~~~-~~~~~~~~~~~~vP~i-~~~~g~--~l~----~ 65 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIEED-EGAA-DRVVSVNNGNMTVPTV-KFADGS--FLT----N 65 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCcCC-HhHH-HHHHHHhCCCceeCEE-EECCCe--Eec----C
Confidence 6789999999999999988765 356667888877 5544 34 488999997 577665 222 2
Q ss_pred CCHHHHHHHHH
Q 012452 450 RDVDSLMAFVD 460 (463)
Q Consensus 450 ~~~~~L~~fI~ 460 (463)
.+..+|.+.|+
T Consensus 66 ~~~~~~~~~l~ 76 (77)
T TIGR02200 66 PSAAQVKAKLQ 76 (77)
T ss_pred CCHHHHHHHhh
Confidence 34556666654
No 180
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.32 E-value=3.6e-06 Score=78.26 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=68.5
Q ss_pred CCCcEEEEEe-cCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC------------------------cHHHHHHcC
Q 012452 370 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------------------QKEYAKQKL 424 (463)
Q Consensus 370 ~~k~vlV~Fy-A~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~------------------------~~~l~~~~~ 424 (463)
.++++||+|| +.||++|....+.|.++.+++.+.++.++.|.+|.. +..++ +.|
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a-~~~ 108 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLT-RNF 108 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHH-HHh
Confidence 4789999999 999999999999999999999765788888776531 13566 788
Q ss_pred CCC------CCCEEEEEeCCCcCeeec-C--CCCCCHHHHHHHHHHhC
Q 012452 425 QLG------SFPTILFFPKHSSKPIKY-P--SERRDVDSLMAFVDALR 463 (463)
Q Consensus 425 ~I~------~~PTi~~f~~g~~~~~~y-~--gg~~~~~~L~~fI~~l~ 463 (463)
+|. ..|+.++++..+.+...+ . ...++.++|.+.|++++
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~~ 156 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAAQ 156 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 886 469898896544332222 1 11368899998887653
No 181
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.31 E-value=3.1e-06 Score=72.42 Aligned_cols=70 Identities=24% Similarity=0.538 Sum_probs=59.9
Q ss_pred CCCcEEEEEecC-CChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------HHHHHHcCCCC-
Q 012452 370 RQEPWLVVLYAP-WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------KEYAKQKLQLG- 427 (463)
Q Consensus 370 ~~k~vlV~FyA~-wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~--------------------~~l~~~~~~I~- 427 (463)
.++++||.||+. ||++|+...+.+.++.++++..++.|+.|..+..+ ..+. +.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELA-KAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHH-HHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHH-HHcCCcc
Confidence 469999999999 99999999999999999999767999999876431 4567 788888
Q ss_pred -----CCCEEEEEeCCCc
Q 012452 428 -----SFPTILFFPKHSS 440 (463)
Q Consensus 428 -----~~PTi~~f~~g~~ 440 (463)
.+|+++++++++.
T Consensus 103 ~~~~~~~p~~~lid~~g~ 120 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGK 120 (124)
T ss_dssp TTTSEESEEEEEEETTSB
T ss_pred ccCCceEeEEEEECCCCE
Confidence 8999999987773
No 182
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.29 E-value=5e-06 Score=76.15 Aligned_cols=92 Identities=12% Similarity=0.154 Sum_probs=68.1
Q ss_pred CCCcEEEEEe-cCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------cHHHHH
Q 012452 370 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK 421 (463)
Q Consensus 370 ~~k~vlV~Fy-A~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~---------------------------~~~l~~ 421 (463)
.++.+||+|| +.||++|....+.|.++++++.+.++.++.|.+|.. ...+.
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~- 106 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS- 106 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH-
Confidence 4689999999 899999999999999999999876788888876532 02455
Q ss_pred HcCCCC------CCCEEEEEeCCCcCeeecCC---CCCCHHHHHHHHHHh
Q 012452 422 QKLQLG------SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL 462 (463)
Q Consensus 422 ~~~~I~------~~PTi~~f~~g~~~~~~y~g---g~~~~~~L~~fI~~l 462 (463)
+.|++. ..|+.+++++.+.+...+.+ ..++.++|.+.|+.+
T Consensus 107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 567775 57899999766544333321 135778888888765
No 183
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.27 E-value=1.8e-06 Score=76.61 Aligned_cols=69 Identities=16% Similarity=0.365 Sum_probs=57.4
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCC--CeEEEEEEcCCCc------------------------HHHHHHc
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQ------------------------KEYAKQK 423 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~--~v~f~~VD~d~~~------------------------~~l~~~~ 423 (463)
.+|.|.++|.|.||++|+.|.|.+.++.+.+++. .+.++-|+-|.+. .+++ ++
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~-~k 110 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLS-EK 110 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHH-Hh
Confidence 5799999999999999999999999999998772 3777777766541 4567 79
Q ss_pred CCCCCCCEEEEEeCCC
Q 012452 424 LQLGSFPTILFFPKHS 439 (463)
Q Consensus 424 ~~I~~~PTi~~f~~g~ 439 (463)
|.|.++|++.+.+..+
T Consensus 111 y~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDG 126 (157)
T ss_pred cccCcCceeEEecCCC
Confidence 9999999999986554
No 184
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.26 E-value=5.7e-06 Score=74.10 Aligned_cols=88 Identities=13% Similarity=0.124 Sum_probs=61.6
Q ss_pred CCCcEEEEEecC-CChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------cHHHHHHcCCCCC
Q 012452 370 RQEPWLVVLYAP-WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLGS 428 (463)
Q Consensus 370 ~~k~vlV~FyA~-wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~--------------------~~~l~~~~~~I~~ 428 (463)
.++++||+||+. ||+.|....+.+.++.+++++.++.|+.|..|.. +..+. +.|++..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~ 107 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVA-EQFGVWG 107 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHH-HHhCCCc
Confidence 468999999976 7888999999999999999876799998887532 13566 6778764
Q ss_pred C------------CEEEEEeCCCcCeeecCCCCCCHHHHHHHH
Q 012452 429 F------------PTILFFPKHSSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 429 ~------------PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI 459 (463)
. |+.+++++.+.+...+.| ....+.+.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g-~~~~~~~~~~~ 149 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDK-FKTSNHHDVVL 149 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcC-CCcchhHHHHH
Confidence 3 677788655544555554 33334433333
No 185
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.24 E-value=1.2e-05 Score=82.03 Aligned_cols=156 Identities=14% Similarity=0.085 Sum_probs=95.0
Q ss_pred CcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHH-----HHH--hc
Q 012452 112 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQA-----LVR--SK 183 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~-----~~~--~~ 183 (463)
.+|+|++|||.||+++ +++++.+.++..+++|.. .+..+.++++++++|++++++.-.. .++. ++. ..
T Consensus 6 ~kVlVa~SGGvDSsv~a~lL~~~G~eV~av~~~~~---~~e~~~a~~va~~LGI~~~vvd~~~-~f~~~v~~~~~~~~~~ 81 (362)
T PRK14664 6 KRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW---GDEPQDARELAARMGIEHYVADERV-PFKDTIVKNFIDEYRQ 81 (362)
T ss_pred CEEEEEEeCCHHHHHHHHHHHHcCCcEEEEEecCc---chhHHHHHHHHHHhCCCEEEEeChH-HHHHHHHHHhHHHHHc
Confidence 5699999999999775 777777888888999874 2344679999999999987764332 1221 111 22
Q ss_pred CCCCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCceec-CCC-CcCC--cCCCCCe--EEEEe
Q 012452 184 GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQV-DPV-FEGL--EGGVGSL--VKWNP 255 (463)
Q Consensus 184 g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~~-d~~-~~~~--~~~~~~~--~k~~P 255 (463)
|. .....-.|-...|..-|.++.. +.+.+.||.-..-.. .-.....+.. |.. .... -...+.. ..+.|
T Consensus 82 G~---tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~~-~~~~~~l~~g~D~~kDQsyfl~~l~~~~l~~~ifP 157 (362)
T PRK14664 82 GR---TPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLEE-RNGHIYIVAGDDDKKDQSYFLWRLGQDILRRCIFP 157 (362)
T ss_pred CC---CCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCcccccc-CCCeEEEEEcCCCcchHHHHHHhcCHHHHhHHhcc
Confidence 22 1112234555667776777665 456888998764331 1011111111 110 0000 0000111 25789
Q ss_pred CccCcHHHHHHHHHhCCCCc
Q 012452 256 VANVKGNDIWNFLRTMDVPI 275 (463)
Q Consensus 256 I~dWt~~DVw~yi~~~~lp~ 275 (463)
|.+++.+||..|.+++|+|.
T Consensus 158 Lg~~~K~evr~~A~~~gl~~ 177 (362)
T PRK14664 158 LGNYTKQTVREYLREKGYEA 177 (362)
T ss_pred CccCCHHHHHHHHHHcCCCC
Confidence 99999999999999999975
No 186
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.21 E-value=1.2e-05 Score=79.37 Aligned_cols=103 Identities=20% Similarity=0.329 Sum_probs=74.6
Q ss_pred CCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHh------HHHHHHHHHHh-cCCCeEEEEEEcCCCcHHHHHHc
Q 012452 351 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAM------EGSYVELADKL-AGNGVKVGKFRADGDQKEYAKQK 423 (463)
Q Consensus 351 ~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~------~p~l~~la~~~-~~~~v~f~~VD~d~~~~~l~~~~ 423 (463)
..|+.||..||+++++ .-+..+|+||.|-- .-+.. ...+-+|+.+. ...++.|+.||..++ ..++ ++
T Consensus 34 DRVi~LneKNfk~~lK---kyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd-~klA-KK 107 (383)
T PF01216_consen 34 DRVIDLNEKNFKRALK---KYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD-AKLA-KK 107 (383)
T ss_dssp --CEEE-TTTHHHHHH---H-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT-HHHH-HH
T ss_pred cceEEcchhHHHHHHH---hhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH-HHHH-Hh
Confidence 6899999999999987 67888888888763 22222 22233454444 446899999999999 9999 99
Q ss_pred CCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 424 LQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 424 ~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
+++...+++.+|++|. .+.|.| .++++.|+.||..+
T Consensus 108 Lgv~E~~SiyVfkd~~--~IEydG-~~saDtLVeFl~dl 143 (383)
T PF01216_consen 108 LGVEEEGSIYVFKDGE--VIEYDG-ERSADTLVEFLLDL 143 (383)
T ss_dssp HT--STTEEEEEETTE--EEEE-S---SHHHHHHHHHHH
T ss_pred cCccccCcEEEEECCc--EEEecC-ccCHHHHHHHHHHh
Confidence 9999999999999999 799998 89999999999754
No 187
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.20 E-value=5.7e-06 Score=78.28 Aligned_cols=175 Identities=20% Similarity=0.273 Sum_probs=88.3
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCC-hHHH--HHHHHhcCCCC
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPD-AVEV--QALVRSKGLFS 187 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl-~i~~~~p~-~~~~--~~~~~~~g~~~ 187 (463)
+.+|.||||.||+++ +++.+.+.++..+++|.|.....-++.++++.+++|+ +.+++.-+ ...+ ..+... ...
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~~~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~L~~~-~~~- 78 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKEGYEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSALTDD-SIE- 78 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH-SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHHHHHT-T---
T ss_pred CEEEEeCCCHHHHHHHHHHHHcCCeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCcccCC-CcC-
Confidence 368899999999866 7777778889999999998888888999999999999 77666433 1110 011111 100
Q ss_pred CCccchhhhhhchhhhHHHHHH-----------ccCceEEEeeeccCCcccccCCCceecCCCCcCC--cCCCCCeEEEE
Q 012452 188 FYEDGHQECCRVRKVRPLRRAL-----------KGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGL--EGGVGSLVKWN 254 (463)
Q Consensus 188 ~~~~~~~~Cc~~~Kv~Pl~r~l-----------~~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~--~~~~~~~~k~~ 254 (463)
.+......-..-.-.-|.|..+ .+...+++|.-+++..+-.-..+-+- ..++.. .+....+--..
T Consensus 79 v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D~~~ypDc~~~F~--~~~~~~~~~~~~~~v~i~~ 156 (209)
T PF06508_consen 79 VPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAEDASGYPDCRPEFI--DAMNRLLNLGEGGPVRIET 156 (209)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-STT--GGGSHHHH--HHHHHHHHHHHTS--EEE-
T ss_pred CcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCccCCCCCChHHHH--HHHHHHHHhcCCCCEEEEe
Confidence 0100000000000011222211 15578889999888421121111110 000000 00113466679
Q ss_pred eCccCcHHHHHHHHHhCCCCccchhccCCcc----cCcccCC
Q 012452 255 PVANVKGNDIWNFLRTMDVPINSLHSQGYIS----IGCEPCT 292 (463)
Q Consensus 255 PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~s----iGC~~Ct 292 (463)
|+.+|+..||+..-...++|+.--|+| |.+ .+|-.|+
T Consensus 157 P~~~~tK~eiv~~~~~lg~~~~~T~SC-y~~~~~~~~CG~C~ 197 (209)
T PF06508_consen 157 PLIDLTKAEIVKLGVELGVPLELTWSC-YRGGEKGKHCGRCP 197 (209)
T ss_dssp TTTT--HHHHHHHHHHTTHHHHH-B-S-TTS--BTTTTSSSH
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHccCC-CCCCCCCCCCCCCH
Confidence 999999999999999999988777777 443 5666664
No 188
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.17 E-value=9.3e-06 Score=71.98 Aligned_cols=88 Identities=14% Similarity=0.225 Sum_probs=61.4
Q ss_pred CcEEEEEe-cCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------c--HHHHHHcCCCCC
Q 012452 372 EPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------Q--KEYAKQKLQLGS 428 (463)
Q Consensus 372 k~vlV~Fy-A~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~--------------------~--~~l~~~~~~I~~ 428 (463)
++++|.|| ++||+.|....|.+.++.+++.+.++.++.|..+.. + ..+. +.|++..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~-~~~g~~~ 107 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVA-KAYGVFD 107 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHH-HHhCCcc
Confidence 77888887 999999999999999999999866788888876531 1 3456 6777763
Q ss_pred ----C--CEEEEEeCCCcCeeecCCC---CCCHHHHHHHHH
Q 012452 429 ----F--PTILFFPKHSSKPIKYPSE---RRDVDSLMAFVD 460 (463)
Q Consensus 429 ----~--PTi~~f~~g~~~~~~y~gg---~~~~~~L~~fI~ 460 (463)
+ |++++++.++.....+.+. .++..++.+-|+
T Consensus 108 ~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 108 EDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred ccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 3 3778886544333333332 355666666554
No 189
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.16 E-value=1.1e-05 Score=71.18 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=36.8
Q ss_pred CCcEEEEE-ecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 012452 371 QEPWLVVL-YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 415 (463)
Q Consensus 371 ~k~vlV~F-yA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~ 415 (463)
+++++|.| +++||++|+...|.|.++.+++.+.++.++.|..+..
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 34555554 6999999999999999999999766799999987654
No 190
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.16 E-value=1.3e-05 Score=73.21 Aligned_cols=88 Identities=11% Similarity=0.183 Sum_probs=63.5
Q ss_pred CCCcEEEEEecCC-ChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------cHHHHHHcCCC
Q 012452 370 RQEPWLVVLYAPW-CQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQL 426 (463)
Q Consensus 370 ~~k~vlV~FyA~w-C~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~----------------------~~~l~~~~~~I 426 (463)
.++++||+||+.| |++|....|.|.++++++. ++.++.|..|.. +..++ +.|++
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~-~~~gv 119 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFG-KAYGV 119 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHH-HHhCC
Confidence 4789999999999 9999999999999999984 588888876531 12667 78888
Q ss_pred CCCC---------EEEEEeCCCcCeeec--C--CCCCCHHHHHHHHH
Q 012452 427 GSFP---------TILFFPKHSSKPIKY--P--SERRDVDSLMAFVD 460 (463)
Q Consensus 427 ~~~P---------Ti~~f~~g~~~~~~y--~--gg~~~~~~L~~fI~ 460 (463)
...| +.++++..+.+...+ . ....+.+++.++|+
T Consensus 120 ~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 120 AIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred eecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 8777 888887555432222 1 12345666766664
No 191
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.15 E-value=1.4e-05 Score=74.19 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=70.5
Q ss_pred CCCcEEEEEe-cCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC------------------------cHHHHHHcC
Q 012452 370 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------------------QKEYAKQKL 424 (463)
Q Consensus 370 ~~k~vlV~Fy-A~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~------------------------~~~l~~~~~ 424 (463)
.++++||+|| +.||+.|....+.|.++.+++.+.++.++.|..|.. +..++ +.|
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia-~~y 108 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALT-RNF 108 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHH-HHc
Confidence 4678999999 999999999999999999999766788888876541 14677 788
Q ss_pred CC----CCC--CEEEEEeCCCcCeee--cC-CCCCCHHHHHHHHHHhC
Q 012452 425 QL----GSF--PTILFFPKHSSKPIK--YP-SERRDVDSLMAFVDALR 463 (463)
Q Consensus 425 ~I----~~~--PTi~~f~~g~~~~~~--y~-gg~~~~~~L~~fI~~l~ 463 (463)
++ .++ |+.++++.++.+... +. +..++.+++.+.|++++
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 88 356 999999755543211 11 22479999999998764
No 192
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.15 E-value=3.6e-05 Score=70.46 Aligned_cols=104 Identities=15% Similarity=0.224 Sum_probs=86.1
Q ss_pred CCeeecChhhHHHHHhhcCCCCc-EEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCC--
Q 012452 351 QNLVTLNRTGMENLARLDHRQEP-WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG-- 427 (463)
Q Consensus 351 ~~V~~lt~~~f~~~i~~~~~~k~-vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~-- 427 (463)
+.|.++|.+++..+.. .+.+ +++.|+.........+...+..+|+++++ .+.|+.+|++.. +.++ +.|++.
T Consensus 77 P~v~~~t~~n~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~~f~~~d~~~~-~~~~-~~~~i~~~ 150 (184)
T PF13848_consen 77 PLVPELTPENFEKLFS---SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG-KINFVYVDADDF-PRLL-KYFGIDED 150 (184)
T ss_dssp TSCEEESTTHHHHHHS---TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT-TSEEEEEETTTT-HHHH-HHTTTTTS
T ss_pred ccccccchhhHHHHhc---CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC-eEEEEEeehHHh-HHHH-HHcCCCCc
Confidence 4799999999999886 5655 88888877788899999999999999998 899999999988 8899 899998
Q ss_pred CCCEEEEEeCCCcC-eeecCCCCCCHHHHHHHHHH
Q 012452 428 SFPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 428 ~~PTi~~f~~g~~~-~~~y~gg~~~~~~L~~fI~~ 461 (463)
.+|+++++...... ...+.+ ..+.++|.+||+.
T Consensus 151 ~~P~~vi~~~~~~~~~~~~~~-~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 151 DLPALVIFDSNKGKYYYLPEG-EITPESIEKFLND 184 (184)
T ss_dssp SSSEEEEEETTTSEEEE--SS-CGCHHHHHHHHHH
T ss_pred cCCEEEEEECCCCcEEcCCCC-CCCHHHHHHHhcC
Confidence 89999999844432 222344 7999999999974
No 193
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.14 E-value=1.3e-05 Score=68.53 Aligned_cols=79 Identities=16% Similarity=0.360 Sum_probs=53.6
Q ss_pred hhHHHHHhh-cCCCCcEEEEEec-------CCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC------cHHHHHH--
Q 012452 359 TGMENLARL-DHRQEPWLVVLYA-------PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------QKEYAKQ-- 422 (463)
Q Consensus 359 ~~f~~~i~~-~~~~k~vlV~FyA-------~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~------~~~l~~~-- 422 (463)
++|.+.++. .+.+++++|+|++ +|||.|...+|.+++.-....+ +..|+.|.+... +..+- .
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wkdp~n~fR-~~p 83 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWKDPNNPFR-TDP 83 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC-TTSHHH-H--
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhCCCCCCce-Ecc
Confidence 456666653 2456899999996 6999999999999998887655 788888887432 12444 3
Q ss_pred cCCCCCCCEEEEEeCCC
Q 012452 423 KLQLGSFPTILFFPKHS 439 (463)
Q Consensus 423 ~~~I~~~PTi~~f~~g~ 439 (463)
+++|+++||++-+..++
T Consensus 84 ~~~l~~IPTLi~~~~~~ 100 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETGE 100 (119)
T ss_dssp CC---SSSEEEECTSS-
T ss_pred eeeeeecceEEEECCCC
Confidence 69999999999998775
No 194
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.12 E-value=1.5e-05 Score=74.44 Aligned_cols=124 Identities=14% Similarity=0.108 Sum_probs=79.3
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcH------HHHHHHHHHHHHhCCcEEEEcCC--hHHHHHHHHhc
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNP------ETYRFFDEVEKHFGIRIEYMFPD--AVEVQALVRSK 183 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fp------eT~~~~~~~~~~~gl~i~~~~p~--~~~~~~~~~~~ 183 (463)
+++++|||||||+++ +++.+.+.++..+++++..... .-.+.++.+++.+|++++++.-+ ...+.+.+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l--- 77 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEEEDEVEDL--- 77 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHH---
Confidence 378999999999876 8888888778777777654322 24678899999999998776421 11111000
Q ss_pred CCCCCCccchhhhhhchhhhHHHHHHccCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCccCcHHH
Q 012452 184 GLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND 263 (463)
Q Consensus 184 g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~D 263 (463)
...+..+.+. +.++++.|...++- +|.....+.-. -++.-+.||..-..++
T Consensus 78 ---------------~~~l~~~~~~--g~~~vv~G~i~sd~--~~~~~e~~~~~----------~gl~~~~PLW~~~~~~ 128 (194)
T cd01994 78 ---------------KELLRKLKEE--GVDAVVFGAILSEY--QRTRVERVCER----------LGLEPLAPLWGRDQEE 128 (194)
T ss_pred ---------------HHHHHHHHHc--CCCEEEECccccHH--HHHHHHHHHHH----------cCCEEEecccCCCHHH
Confidence 0011111111 57799999998886 45544332211 2577899999988887
Q ss_pred HHHHH
Q 012452 264 IWNFL 268 (463)
Q Consensus 264 Vw~yi 268 (463)
+..=+
T Consensus 129 ll~e~ 133 (194)
T cd01994 129 LLREM 133 (194)
T ss_pred HHHHH
Confidence 65543
No 195
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.09 E-value=9.8e-05 Score=62.72 Aligned_cols=104 Identities=19% Similarity=0.370 Sum_probs=80.1
Q ss_pred CCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHH-HHhcC-CCeEEEEEEcCC----CcHHHHHHcC
Q 012452 351 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELA-DKLAG-NGVKVGKFRADG----DQKEYAKQKL 424 (463)
Q Consensus 351 ~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la-~~~~~-~~v~f~~VD~d~----~~~~l~~~~~ 424 (463)
...+.|+.-+|++++. +.+.+||.|=... |--.-...|.++| +..+. +++.++.|-+.+ .|.+++ ++|
T Consensus 4 ~G~v~LD~~tFdKvi~---kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~La-ery 77 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIP---KFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELA-ERY 77 (126)
T ss_dssp TTSEEESTTHHHHHGG---GSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHH-HHT
T ss_pred Cceeeccceehhheec---cCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHH-HHh
Confidence 4578899999999997 7899999998754 3445566888999 55543 579999998743 248999 999
Q ss_pred CC--CCCCEEEEEeCCCcCeeec--CCCCCCHHHHHHHHHH
Q 012452 425 QL--GSFPTILFFPKHSSKPIKY--PSERRDVDSLMAFVDA 461 (463)
Q Consensus 425 ~I--~~~PTi~~f~~g~~~~~~y--~gg~~~~~~L~~fI~~ 461 (463)
+| ..+|.+++|..+...++.| .+ ..+.++|.+|+.+
T Consensus 78 ~i~ke~fPv~~LF~~~~~~pv~~p~~~-~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 78 KIDKEDFPVIYLFVGDKEEPVRYPFDG-DVTADNLQRFVKS 117 (126)
T ss_dssp T-SCCC-SEEEEEESSTTSEEEE-TCS--S-HHHHHHHHHH
T ss_pred CCCcccCCEEEEecCCCCCCccCCccC-CccHHHHHHHHHh
Confidence 99 5799999999777778988 55 6999999999985
No 196
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.08 E-value=2.6e-05 Score=75.64 Aligned_cols=86 Identities=22% Similarity=0.210 Sum_probs=69.2
Q ss_pred CCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC----------cHHHHHHcCCCCCCCEEEEEeCCCc
Q 012452 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPKHSS 440 (463)
Q Consensus 371 ~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~----------~~~l~~~~~~I~~~PTi~~f~~g~~ 440 (463)
++.-||+||.+.|++|+++.|++..++++| ++.+..|++|.. +...+ ++++|..+|++++...+..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~~p~fp~~~~d~gqa-~~l~v~~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTLIPGLPNSRSDSGQA-QHLGVKYFPALYLVNPKSQ 225 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCCCCCCccCChHHH-HhcCCccCceEEEEECCCC
Confidence 568999999999999999999999999999 578888888764 14577 8999999999999977755
Q ss_pred CeeecCCCCCCHHHHHHHHH
Q 012452 441 KPIKYPSERRDVDSLMAFVD 460 (463)
Q Consensus 441 ~~~~y~gg~~~~~~L~~fI~ 460 (463)
......-|..+.++|.+=|-
T Consensus 226 ~~~pv~~G~iS~deL~~Ri~ 245 (256)
T TIGR02739 226 KMSPLAYGFISQDELKERIL 245 (256)
T ss_pred cEEEEeeccCCHHHHHHHHH
Confidence 43333335799999876554
No 197
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.05 E-value=2.5e-05 Score=73.57 Aligned_cols=91 Identities=16% Similarity=0.225 Sum_probs=67.5
Q ss_pred CCcEEE-EEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------cHHHHHHc
Q 012452 371 QEPWLV-VLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQK 423 (463)
Q Consensus 371 ~k~vlV-~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~--------------------------~~~l~~~~ 423 (463)
++.++| .|+++||+.|....+.|.++.+++++.++.++.|.+|.. +..++ +.
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia-~~ 105 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA-RE 105 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH-HH
Confidence 555544 688999999999999999999999866788888876531 14567 67
Q ss_pred CCCC------CCCEEEEEeCCCcCee-e-c--CCCCCCHHHHHHHHHHhC
Q 012452 424 LQLG------SFPTILFFPKHSSKPI-K-Y--PSERRDVDSLMAFVDALR 463 (463)
Q Consensus 424 ~~I~------~~PTi~~f~~g~~~~~-~-y--~gg~~~~~~L~~fI~~l~ 463 (463)
|++. .+|+++++++++.+.. . | .+ .++.++|.+.|++++
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~-gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAET-GRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCC-CCCHHHHHHHHHHhh
Confidence 8874 5899999976554321 1 1 23 489999999998764
No 198
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.05 E-value=1.1e-05 Score=72.59 Aligned_cols=79 Identities=19% Similarity=0.447 Sum_probs=54.7
Q ss_pred ecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHH-HH--HHHHHHhcCCCeEEEEEEcCCCcHHHHHHcC-------
Q 012452 355 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEG-SY--VELADKLAGNGVKVGKFRADGDQKEYAKQKL------- 424 (463)
Q Consensus 355 ~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p-~l--~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~------- 424 (463)
..+++.|+..-+ ++|+++|.++++||..|+.|.. .| .++++.++. ++.-++||.++. +++. ..|
T Consensus 24 ~w~~ea~~~Ak~---e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~-~FI~VkvDree~-Pdid-~~y~~~~~~~ 97 (163)
T PF03190_consen 24 PWGEEALEKAKK---ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-NFIPVKVDREER-PDID-KIYMNAVQAM 97 (163)
T ss_dssp -SSHHHHHHHHH---HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-H-EEEEEETTT--HHHH-HHHHHHHHHH
T ss_pred cCCHHHHHHHHh---cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC-CEEEEEeccccC-ccHH-HHHHHHHHHh
Confidence 345667777655 8999999999999999999986 44 367888876 688899999998 8888 676
Q ss_pred -CCCCCCEEEEEeCCC
Q 012452 425 -QLGSFPTILFFPKHS 439 (463)
Q Consensus 425 -~I~~~PTi~~f~~g~ 439 (463)
+..++|+.+|.....
T Consensus 98 ~~~gGwPl~vfltPdg 113 (163)
T PF03190_consen 98 SGSGGWPLTVFLTPDG 113 (163)
T ss_dssp HS---SSEEEEE-TTS
T ss_pred cCCCCCCceEEECCCC
Confidence 788999999885544
No 199
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.05 E-value=1.4e-05 Score=69.67 Aligned_cols=98 Identities=19% Similarity=0.318 Sum_probs=55.6
Q ss_pred cChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcC---CCCCCCEE
Q 012452 356 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKL---QLGSFPTI 432 (463)
Q Consensus 356 lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~---~I~~~PTi 432 (463)
++.+....+.. ..++.-++.|..+|||.|....|.+.++++..++ +.+-.+..|++ .++. ++| +..++||+
T Consensus 28 l~~~~~~~l~~--~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~--i~~~~i~rd~~-~el~-~~~lt~g~~~IP~~ 101 (129)
T PF14595_consen 28 LSEEQIEKLKS--IQKPYNILVITETWCGDCARNVPVLAKIAEANPN--IEVRIILRDEN-KELM-DQYLTNGGRSIPTF 101 (129)
T ss_dssp --HHHHHHHHT----S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT--EEEEEE-HHHH-HHHT-TTTTT-SS--SSEE
T ss_pred CCHHHHHHHHh--cCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC--CeEEEEEecCC-hhHH-HHHHhCCCeecCEE
Confidence 44444444332 2456678889999999999999999999998754 78877777777 7776 544 57899999
Q ss_pred EEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 433 LFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 433 ~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
++++++.. .+..-| . -++.+.++++++
T Consensus 102 I~~d~~~~-~lg~wg-e-rP~~~~~~~~~~ 128 (129)
T PF14595_consen 102 IFLDKDGK-ELGRWG-E-RPKEVQELVDEY 128 (129)
T ss_dssp EEE-TT---EEEEEE-S-S-HHHH------
T ss_pred EEEcCCCC-EeEEEc-C-CCHHHhhccccC
Confidence 99976533 454444 2 345566666654
No 200
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.03 E-value=1.1e-05 Score=64.14 Aligned_cols=59 Identities=14% Similarity=0.285 Sum_probs=44.5
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcH----HHHHHcCCCCCCCEEEEEeCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK----EYAKQKLQLGSFPTILFFPKHS 439 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~----~l~~~~~~I~~~PTi~~f~~g~ 439 (463)
++.|+++||++|+.+.+.++++. +.+ .+.++.||.+.+.. .+. +.+++.++|+++ -+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~~~~~~~~~~l~-~~~g~~~vP~v~--i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQLSNGSEIQDYLE-EITGQRTVPNIF--INGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCCCChHHHHHHHH-HHhCCCCCCeEE--ECCE
Confidence 57899999999999999999876 332 47788888775522 244 667899999984 4554
No 201
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=8.5e-05 Score=62.94 Aligned_cols=100 Identities=12% Similarity=0.219 Sum_probs=79.8
Q ss_pred hhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeC
Q 012452 358 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 437 (463)
Q Consensus 358 ~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~ 437 (463)
....++.+. ....+.++|-|.-.|-|.|..|...|.++++.+.+ -..++-+|+++. +++. +-|++...||++||-+
T Consensus 11 ~~~VdqaI~-~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn-fa~IylvdideV-~~~~-~~~~l~~p~tvmfFfn 86 (142)
T KOG3414|consen 11 GWEVDQAIL-STEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN-FAVIYLVDIDEV-PDFV-KMYELYDPPTVMFFFN 86 (142)
T ss_pred HHHHHHHHh-cccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh-ceEEEEEecchh-hhhh-hhhcccCCceEEEEEc
Confidence 456677665 45678999999999999999999999999999988 677888999998 9999 9999999999999988
Q ss_pred CCcCeeecCCC--------CCCHHHHHHHHHH
Q 012452 438 HSSKPIKYPSE--------RRDVDSLMAFVDA 461 (463)
Q Consensus 438 g~~~~~~y~gg--------~~~~~~L~~fI~~ 461 (463)
++-..+.+..| ..+.+++++.|+.
T Consensus 87 ~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 87 NKHMKIDLGTGDNNKINFAFEDKQEFIDIIET 118 (142)
T ss_pred CceEEEeeCCCCCceEEEEeccHHHHHHHHHH
Confidence 87444444433 2345666666654
No 202
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.02 E-value=2.3e-05 Score=69.10 Aligned_cols=68 Identities=10% Similarity=0.165 Sum_probs=52.5
Q ss_pred CCCcEEEEEecCC-ChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------c-HHHHHHcCCC
Q 012452 370 RQEPWLVVLYAPW-CQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------Q-KEYAKQKLQL 426 (463)
Q Consensus 370 ~~k~vlV~FyA~w-C~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~---------------------~-~~l~~~~~~I 426 (463)
.++++||+||+.| |++|+..+|.|.++.+++. ++.|+.|+.|.. . ..++ +.|++
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~-~~~gv 101 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFG-KAYGV 101 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHH-HHhCC
Confidence 4789999999998 6999999999999999985 488888887532 1 3455 67777
Q ss_pred CC------CCEEEEEeCCCc
Q 012452 427 GS------FPTILFFPKHSS 440 (463)
Q Consensus 427 ~~------~PTi~~f~~g~~ 440 (463)
.. .|+.++++..+.
T Consensus 102 ~~~~~~~~~~~~~iid~~G~ 121 (143)
T cd03014 102 LIKDLGLLARAVFVIDENGK 121 (143)
T ss_pred eeccCCccceEEEEEcCCCe
Confidence 53 688888864443
No 203
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.02 E-value=4.3e-05 Score=73.72 Aligned_cols=86 Identities=17% Similarity=0.165 Sum_probs=67.5
Q ss_pred CCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC----------cHHHHHHcCCCCCCCEEEEEeCCCc
Q 012452 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPKHSS 440 (463)
Q Consensus 371 ~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~----------~~~l~~~~~~I~~~PTi~~f~~g~~ 440 (463)
++.-|++||.+.|++|+++.|++..++++| ++.+..|.+|.. +...+ ++++|..+|++++...+..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~~p~fp~~~~d~gqa-~~l~v~~~PAl~Lv~~~t~ 218 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVINPLLPDSRTDQGQA-QRLGVKYFPALMLVDPKSG 218 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCCCCCCCccChhHH-HhcCCcccceEEEEECCCC
Confidence 468999999999999999999999999999 577777777652 13466 7899999999999977765
Q ss_pred CeeecCCCCCCHHHHHHHHH
Q 012452 441 KPIKYPSERRDVDSLMAFVD 460 (463)
Q Consensus 441 ~~~~y~gg~~~~~~L~~fI~ 460 (463)
......-|..+.++|.+=|.
T Consensus 219 ~~~pv~~G~iS~deL~~Ri~ 238 (248)
T PRK13703 219 SVRPLSYGFITQDDLAKRFL 238 (248)
T ss_pred cEEEEeeccCCHHHHHHHHH
Confidence 43333224789999876554
No 204
>PRK15000 peroxidase; Provisional
Probab=97.99 E-value=3.9e-05 Score=72.14 Aligned_cols=93 Identities=13% Similarity=0.255 Sum_probs=70.4
Q ss_pred CCCcEEEEEec-CCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------cHHHHH
Q 012452 370 RQEPWLVVLYA-PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK 421 (463)
Q Consensus 370 ~~k~vlV~FyA-~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~---------------------------~~~l~~ 421 (463)
.++.+||+||+ .||+.|....+.|.+++++++..++.++.|.+|.. +.+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia- 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ- 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH-
Confidence 47899999999 59999999999999999999876788888877632 13456
Q ss_pred HcCCCC------CCCEEEEEeCCCcCeeecC---CCCCCHHHHHHHHHHhC
Q 012452 422 QKLQLG------SFPTILFFPKHSSKPIKYP---SERRDVDSLMAFVDALR 463 (463)
Q Consensus 422 ~~~~I~------~~PTi~~f~~g~~~~~~y~---gg~~~~~~L~~fI~~l~ 463 (463)
+.|++. .+|+.+++++.+.+...+. .-.++.+++.+.|++++
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 678886 6899999975554322221 12379999999998764
No 205
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=3.1e-05 Score=65.11 Aligned_cols=77 Identities=16% Similarity=0.292 Sum_probs=60.3
Q ss_pred hhHHHHHhhcCCCCcEEEEEec--------CCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC------cHHHHHHcC
Q 012452 359 TGMENLARLDHRQEPWLVVLYA--------PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------QKEYAKQKL 424 (463)
Q Consensus 359 ~~f~~~i~~~~~~k~vlV~FyA--------~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~------~~~l~~~~~ 424 (463)
+.|++.++....++.++|+|++ +|||.|.+.+|.+.+.-+.... ++.|+.+++.+- +..+. ..+
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~rp~Wk~p~n~FR-~d~ 90 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGNRPYWKDPANPFR-KDP 90 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecCCCcccCCCCccc-cCC
Confidence 5677776655456669999997 7999999999999998886665 899999998642 13455 566
Q ss_pred CC-CCCCEEEEEeC
Q 012452 425 QL-GSFPTILFFPK 437 (463)
Q Consensus 425 ~I-~~~PTi~~f~~ 437 (463)
++ .++||++=|++
T Consensus 91 ~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 91 GILTAVPTLLRWKR 104 (128)
T ss_pred CceeecceeeEEcC
Confidence 66 89999999985
No 206
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.97 E-value=5.6e-05 Score=64.72 Aligned_cols=99 Identities=10% Similarity=0.075 Sum_probs=70.0
Q ss_pred hHHHHHhh-cCCCCcEEEEEecC----CChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc-HHHHHHcCCCCCCCEEE
Q 012452 360 GMENLARL-DHRQEPWLVVLYAP----WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTIL 433 (463)
Q Consensus 360 ~f~~~i~~-~~~~k~vlV~FyA~----wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~-~~l~~~~~~I~~~PTi~ 433 (463)
+|++.+.. .++.|.++|+||++ ||.+|+..... +++.+.++. ++.+...|++..+ ..++ ..+++.++|++.
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~-~fv~w~~dv~~~eg~~la-~~l~~~~~P~~~ 81 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT-RMLFWACSVAKPEGYRVS-QALRERTYPFLA 81 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc-CEEEEEEecCChHHHHHH-HHhCCCCCCEEE
Confidence 34444433 34689999999999 89999764421 345555555 7999999998653 5688 899999999999
Q ss_pred EEe--CCCcC-eeecCCCCCCHHHHHHHHHHh
Q 012452 434 FFP--KHSSK-PIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 434 ~f~--~g~~~-~~~y~gg~~~~~~L~~fI~~l 462 (463)
++. +++.. .....| ..++++|...++.+
T Consensus 82 ~l~~~~~~~~vv~~i~G-~~~~~~ll~~L~~~ 112 (116)
T cd02991 82 MIMLKDNRMTIVGRLEG-LIQPEDLINRLTFI 112 (116)
T ss_pred EEEecCCceEEEEEEeC-CCCHHHHHHHHHHH
Confidence 993 23222 334445 89999999888754
No 207
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.96 E-value=6.5e-05 Score=59.17 Aligned_cols=73 Identities=18% Similarity=0.418 Sum_probs=53.7
Q ss_pred EEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHH
Q 012452 377 VLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLM 456 (463)
Q Consensus 377 ~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~ 456 (463)
.+++++|++|..+...+++++..+ + +.+-.+|.... ++ . .+|+|.++|++++ +|+ +.+.|...+.++|.
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~-~--i~~ei~~~~~~-~~-~-~~ygv~~vPalvI--ng~---~~~~G~~p~~~el~ 72 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL-G--IEVEIIDIEDF-EE-I-EKYGVMSVPALVI--NGK---VVFVGRVPSKEELK 72 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT-T--EEEEEEETTTH-HH-H-HHTT-SSSSEEEE--TTE---EEEESS--HHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc-C--CeEEEEEccCH-HH-H-HHcCCCCCCEEEE--CCE---EEEEecCCCHHHHH
Confidence 347888999999999999999888 3 66666677444 44 4 6999999999954 565 55666467888898
Q ss_pred HHHH
Q 012452 457 AFVD 460 (463)
Q Consensus 457 ~fI~ 460 (463)
++|+
T Consensus 73 ~~l~ 76 (76)
T PF13192_consen 73 ELLE 76 (76)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8875
No 208
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=97.96 E-value=5e-05 Score=80.82 Aligned_cols=142 Identities=17% Similarity=0.189 Sum_probs=89.1
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCc-HH-HHHHHHHHHHHhC--Cc--EEEEcCChHHHHHHHHhcCC
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLN-PE-TYRFFDEVEKHFG--IR--IEYMFPDAVEVQALVRSKGL 185 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~f-pe-T~~~~~~~~~~~g--l~--i~~~~p~~~~~~~~~~~~g~ 185 (463)
++++.+|||+||+++ +++.+.+.++..+|+|.|... .+ ..+..+.+.++|+ .+ ++.+. ..+....+.. ..
T Consensus 179 k~lvllSGGiDS~va~~~~~krG~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~--~~~~~~~i~~-~~ 255 (482)
T PRK01269 179 DVLSLISGGFDSGVASYMLMRRGSRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVD--FEPVVGEILE-KV 255 (482)
T ss_pred eEEEEEcCCchHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEe--cHHHHHHHHh-cC
Confidence 588999999999776 888788889999999999543 32 5777888888886 34 44432 2222111111 11
Q ss_pred CCCCccchhhhhhchhhhHH---HHHHc--cCceEEEeeeccCCcc-cccCCCceecCCCCcCCcCCCCCeEEEEeCccC
Q 012452 186 FSFYEDGHQECCRVRKVRPL---RRALK--GLRAWITGQRKDQSPG-TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV 259 (463)
Q Consensus 186 ~~~~~~~~~~Cc~~~Kv~Pl---~r~l~--~~~~~itG~Rr~ES~~-~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dW 259 (463)
....||-+.|..-+ .++.. |.++++||.-.+|-.. +-.++... .+. .++.-+.||..+
T Consensus 256 ------~~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dvasqtl~nl~~~--~~~--------~~~~v~rPLi~~ 319 (482)
T PRK01269 256 ------DDGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVSSQTLTNLRLI--DNV--------TDTLILRPLIAM 319 (482)
T ss_pred ------CCceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhhhHHHHHHHhh--hhh--------cCCceecCCcCC
Confidence 12246655554333 22221 5679999999888421 11121111 110 124456999999
Q ss_pred cHHHHHHHHHhCCC
Q 012452 260 KGNDIWNFLRTMDV 273 (463)
Q Consensus 260 t~~DVw~yi~~~~l 273 (463)
+..||..|-+..|+
T Consensus 320 dK~EIi~~a~~ig~ 333 (482)
T PRK01269 320 DKEDIIDLAREIGT 333 (482)
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999999997
No 209
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=2.9e-05 Score=68.68 Aligned_cols=104 Identities=19% Similarity=0.316 Sum_probs=71.0
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChH---HHHHHHHhcCCCCC
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAV---EVQALVRSKGLFSF 188 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~---~~~~~~~~~g~~~~ 188 (463)
++++-|||||||.+. -++.+.+.++.+++++.|.+- +.++.++.++.+|++.+++.-+.. .-.+.+.+.|.|
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klgyev~LVTvnFGv~d--~~k~A~~tA~~lgF~h~vl~Ldr~ile~A~em~iedg~P-- 77 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLGYEVELVTVNFGVLD--SWKYARETAAILGFPHEVLQLDREILEDAVEMIIEDGYP-- 77 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhCCCcEEEEEEecccc--chhhHHHHHHHhCCCcceeccCHHHHHHHHHHHHhcCCC--
Confidence 378999999999877 566778899999999999764 568889999999999988765543 223445666653
Q ss_pred CccchhhhhhchhhhHHHHHHccCceEEEeeeccCC
Q 012452 189 YEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQS 224 (463)
Q Consensus 189 ~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~Rr~ES 224 (463)
.+.-++ -...-++-+ +.+.++.+..|+|||+-
T Consensus 78 -~~aIq~-iH~~alE~~--A~r~~~~iaDGTRRDDr 109 (198)
T COG2117 78 -RNAIQY-IHEMALEAL--ASREVDRIADGTRRDDR 109 (198)
T ss_pred -chHHHH-HHHHHHHHH--HHHHHHHHcCCCccccc
Confidence 333221 111112221 11246788899999985
No 210
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.91 E-value=8.9e-05 Score=72.27 Aligned_cols=93 Identities=22% Similarity=0.285 Sum_probs=69.6
Q ss_pred CCCcEEEEEe-cCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------cHHHHH
Q 012452 370 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK 421 (463)
Q Consensus 370 ~~k~vlV~Fy-A~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~---------------------------~~~l~~ 421 (463)
.++.+|++|| +.||+.|....+.|.++.+++.+.++.++.|.+|.. +.+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia- 175 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS- 175 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH-
Confidence 3567777777 899999999999999999999876788888876541 14577
Q ss_pred HcCCCC-----CCCEEEEEeCCCcCeee--cC-CCCCCHHHHHHHHHHhC
Q 012452 422 QKLQLG-----SFPTILFFPKHSSKPIK--YP-SERRDVDSLMAFVDALR 463 (463)
Q Consensus 422 ~~~~I~-----~~PTi~~f~~g~~~~~~--y~-gg~~~~~~L~~fI~~l~ 463 (463)
+.|++. ..|+.+++++.+.+... +. ...++.+++.+.|+.++
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 788885 58999999755443221 21 22479999999998774
No 211
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.89 E-value=7.2e-05 Score=70.45 Aligned_cols=90 Identities=20% Similarity=0.284 Sum_probs=64.8
Q ss_pred cEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------cHHHHHHcCCC
Q 012452 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQKLQL 426 (463)
Q Consensus 373 ~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~--------------------------~~~l~~~~~~I 426 (463)
.+|+.|+++||+.|....+.|.++.+++++.++.++.|.+|.. +..++ +.|++
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia-~~yg~ 106 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVA-KLLGM 106 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHH-HHcCC
Confidence 4566889999999999999999999999876789998887642 13567 77887
Q ss_pred C----C----CCEEEEEeCCCcCeeecCC---CCCCHHHHHHHHHHhC
Q 012452 427 G----S----FPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDALR 463 (463)
Q Consensus 427 ~----~----~PTi~~f~~g~~~~~~y~g---g~~~~~~L~~fI~~l~ 463 (463)
. + .|+.+++++.+.+...+.+ ..++.++|.+.|++++
T Consensus 107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 5 2 3467788655443222111 1368899999998764
No 212
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=8.5e-05 Score=72.47 Aligned_cols=110 Identities=17% Similarity=0.280 Sum_probs=87.5
Q ss_pred CCCeeecChhhHHHHHhhcCCCCcEEEEEec----CCChhHHHhHHHHHHHHHHhcC-----C--CeEEEEEEcCCCcHH
Q 012452 350 SQNLVTLNRTGMENLARLDHRQEPWLVVLYA----PWCQFCQAMEGSYVELADKLAG-----N--GVKVGKFRADGDQKE 418 (463)
Q Consensus 350 ~~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA----~wC~~C~~~~p~l~~la~~~~~-----~--~v~f~~VD~d~~~~~ 418 (463)
...|+.+++++|..++....++-.++|+|.| ..|.-|+....+|.-++..+.. + ++-|..||.|+. ++
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~-p~ 117 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES-PQ 117 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc-HH
Confidence 4689999999999999855556678999998 4699999999999999988643 2 688999999999 99
Q ss_pred HHHHcCCCCCCCEEEEEeCCCcC------eeecCCCCCCHHHHHHHHHHh
Q 012452 419 YAKQKLQLGSFPTILFFPKHSSK------PIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 419 l~~~~~~I~~~PTi~~f~~g~~~------~~~y~gg~~~~~~L~~fI~~l 462 (463)
+. +.++++++|++++|...+.. ...+.-| ..+|++.+|++..
T Consensus 118 ~F-q~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g-~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 118 VF-QQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLG-FEAEQIAQFVADR 165 (331)
T ss_pred HH-HHhcccCCCeEEEeCCCccccccCccchhhhcc-hhHHHHHHHHHHh
Confidence 99 99999999999999443321 1122222 3489999998753
No 213
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.83 E-value=0.00011 Score=69.87 Aligned_cols=92 Identities=15% Similarity=0.205 Sum_probs=68.6
Q ss_pred CCc-EEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------cHHHHHHc
Q 012452 371 QEP-WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQK 423 (463)
Q Consensus 371 ~k~-vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~--------------------------~~~l~~~~ 423 (463)
++. +|+.|+++||+.|....+.|.++.++|...++.++.|.+|.. +..++ +.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va-~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS-NQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH-HH
Confidence 454 567899999999999999999999999866788888887642 13466 67
Q ss_pred CCCC-------CCCEEEEEeCCCcC-eee-cCC-CCCCHHHHHHHHHHhC
Q 012452 424 LQLG-------SFPTILFFPKHSSK-PIK-YPS-ERRDVDSLMAFVDALR 463 (463)
Q Consensus 424 ~~I~-------~~PTi~~f~~g~~~-~~~-y~g-g~~~~~~L~~fI~~l~ 463 (463)
|++. .+|++++++..+.+ .+. |.. ..++.++|.+.|++|+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq 156 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQ 156 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhh
Confidence 7763 67999999755543 222 221 1478999999998874
No 214
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=97.81 E-value=3.7e-05 Score=74.42 Aligned_cols=163 Identities=18% Similarity=0.241 Sum_probs=93.9
Q ss_pred HHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHHc-C-CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHH
Q 012452 101 EIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLT-G-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV 176 (463)
Q Consensus 101 eil~~~~~~~~-~~i~vafSGGKDS~vl-~L~~~~-~-~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~ 176 (463)
+.|+..+++.+ .+++|++|||.||+++ .|+.++ + .++..++++++...+++.+.++.+++.+|++...+.-+. .+
T Consensus 7 ~~L~~~~~~~g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i~~-~~ 85 (242)
T PF02540_consen 7 DFLRDYVKKSGAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDIDP-IF 85 (242)
T ss_dssp HHHHHHHHHHTTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEESHH-HH
T ss_pred HHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccccCChHHHHHHHHHHHHhCCCeeccchHH-HH
Confidence 44555556555 5699999999999877 677764 3 468899999999999999999999999999987763221 12
Q ss_pred HHHHHhcCCCCCCccchhhhhhchhhhHHHHHHc-cCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEe
Q 012452 177 QALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP 255 (463)
Q Consensus 177 ~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~-~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~P 255 (463)
..+....... .......+-.-+....+.-++. .....+.|+ +++.... +..-..| + .+..-++|
T Consensus 86 ~~~~~~~~~~--~~~~~~~Ni~aR~Rm~~ly~~a~~~~~lVlgT------~N~sE~~-~Gy~T~~----G--D~~~d~~P 150 (242)
T PF02540_consen 86 DAFLKSLEPA--DDDLARGNIQARIRMTTLYALANKYNYLVLGT------GNKSELL-LGYFTKY----G--DGAGDIAP 150 (242)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTEEEBE--------CHHHHH-HTCSHTT----T--TTSSSBET
T ss_pred HHHhhhhccc--hhhhhhhhHHHHHHHHHHHHHhcccceEEecC------CcHHHhh-cCccccc----C--ccccccee
Confidence 2221110000 0000111111111222222222 234556554 1333221 1111111 1 12234899
Q ss_pred CccCcHHHHHHHHHhCCCCccchh
Q 012452 256 VANVKGNDIWNFLRTMDVPINSLH 279 (463)
Q Consensus 256 I~dWt~~DVw~yi~~~~lp~npLy 279 (463)
|.+....||+...+..+||-.-+.
T Consensus 151 i~~L~K~eV~~la~~l~ip~~ii~ 174 (242)
T PF02540_consen 151 IADLYKTEVRELARYLGIPEEIIE 174 (242)
T ss_dssp TTTS-HHHHHHHHHHTTCGHHHHC
T ss_pred eCCcCHHHHHHHHHHHhhHHHHhc
Confidence 999999999999999998855444
No 215
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.80 E-value=7.5e-05 Score=65.50 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=39.5
Q ss_pred CCCcEEEEEecCCChh-HHHhHHHHHHHHHHhcCC---CeEEEEEEcCC
Q 012452 370 RQEPWLVVLYAPWCQF-CQAMEGSYVELADKLAGN---GVKVGKFRADG 414 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~-C~~~~p~l~~la~~~~~~---~v~f~~VD~d~ 414 (463)
.+++++|.||++||++ |....+.+.++.+++++. ++.++.|..|.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4789999999999998 999999999999999763 48999888754
No 216
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.80 E-value=4.2e-05 Score=69.73 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=72.6
Q ss_pred CeeecC-hhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012452 352 NLVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 430 (463)
Q Consensus 352 ~V~~lt-~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~P 430 (463)
...++. ..+|-+... ....|++.||-|.-..|+-|...|+.||..+-+ ..|++||+... +-++ .+++|.-+|
T Consensus 67 ~y~ev~~Ekdf~~~~~---kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvnae~~-PFlv-~kL~IkVLP 139 (211)
T KOG1672|consen 67 EYEEVASEKDFFEEVK---KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNAEKA-PFLV-TKLNIKVLP 139 (211)
T ss_pred eEEEeccHHHHHHHhh---cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEecccC-ceee-eeeeeeEee
Confidence 345554 567777665 678899999999999999999999999999987 89999999999 9999 999999999
Q ss_pred EEEEEeCCCc
Q 012452 431 TILFFPKHSS 440 (463)
Q Consensus 431 Ti~~f~~g~~ 440 (463)
++.+|++|+.
T Consensus 140 ~v~l~k~g~~ 149 (211)
T KOG1672|consen 140 TVALFKNGKT 149 (211)
T ss_pred eEEEEEcCEE
Confidence 9999999985
No 217
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=97.78 E-value=0.0001 Score=61.50 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=34.1
Q ss_pred EEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCC--cHHHHHHHHH
Q 012452 114 IAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL--NPETYRFFDE 157 (463)
Q Consensus 114 i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~--fpeT~~~~~~ 157 (463)
++|++|||+||+++ +++.+...++.++|+|.+.+ .++..+++++
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGYQVIAVTVDHGISPRLEDAKEIAKE 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCCCEEEEEEcCCCcccHHHHHHHHHH
Confidence 57899999998766 88888777899999999986 3444444444
No 218
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.77 E-value=0.00012 Score=63.92 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=56.0
Q ss_pred CCCcEEEEEe-cCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------cHHHHHHcCCCC
Q 012452 370 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------QKEYAKQKLQLG 427 (463)
Q Consensus 370 ~~k~vlV~Fy-A~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~---------------------~~~l~~~~~~I~ 427 (463)
.+++++|+|| +.||+.|....|.+.++.++++..++.|+.|..+.. +..+. +.|++.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~g~~ 99 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFA-KAYGVL 99 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHH-HHcCCc
Confidence 5789999999 789999999999999999999655788888876532 03455 667776
Q ss_pred CCC---------EEEEEeCCCcCeeecCC
Q 012452 428 SFP---------TILFFPKHSSKPIKYPS 447 (463)
Q Consensus 428 ~~P---------Ti~~f~~g~~~~~~y~g 447 (463)
..| +++++++++.+...+.+
T Consensus 100 ~~~~~~~~~~~p~~~lid~~g~i~~~~~~ 128 (140)
T cd02971 100 IEKSAGGGLAARATFIIDPDGKIRYVEVE 128 (140)
T ss_pred cccccccCceeEEEEEECCCCcEEEEEec
Confidence 555 67777654433333333
No 219
>PTZ00323 NAD+ synthase; Provisional
Probab=97.77 E-value=0.00032 Score=69.67 Aligned_cols=157 Identities=13% Similarity=0.113 Sum_probs=88.1
Q ss_pred HHHHHHHcC-CcEEEEechhHHHHHH-HHHHHc-CC-C---eEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCCh-
Q 012452 103 MDRALEKFG-NDIAIAFSGAEDVALI-EYAHLT-GR-P---FRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDA- 173 (463)
Q Consensus 103 l~~~~~~~~-~~i~vafSGGKDS~vl-~L~~~~-~~-~---i~vi~~DTg~~-fpeT~~~~~~~~~~~gl~i~~~~p~~- 173 (463)
|+..++..+ .+++|++|||-||+++ .|+.++ +. . ..++.+..... -+.+.+-++.+++.+|++++++.-+.
T Consensus 37 L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A~~la~~lGi~~~~idi~~l 116 (294)
T PTZ00323 37 LNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRGRENIQACGATEVTVDQTEI 116 (294)
T ss_pred HHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEECcHH
Confidence 333444443 4699999999999877 666664 22 1 44555555533 67999999999999999987763222
Q ss_pred -HHHHHHHHhcCCCCCCccc-hhhhhhchhhhHHHHHHc------cCceEEEee-eccCCcccccCCCceecCCCCcCCc
Q 012452 174 -VEVQALVRSKGLFSFYEDG-HQECCRVRKVRPLRRALK------GLRAWITGQ-RKDQSPGTRSEIPVVQVDPVFEGLE 244 (463)
Q Consensus 174 -~~~~~~~~~~g~~~~~~~~-~~~Cc~~~Kv~Pl~r~l~------~~~~~itG~-Rr~ES~~~Ra~~~~~~~d~~~~~~~ 244 (463)
..+...+... . ...... ....-.-+-..|..-++. +...++.|+ .++|-. . -.+....-
T Consensus 117 ~~~~~~~i~~~-~-~~~~~~~~~~n~~ar~R~~~lY~la~~~~~~g~~~lV~GT~N~sE~~-~-~Gy~t~~G-------- 184 (294)
T PTZ00323 117 HTQLSSLVEKA-V-GIKGGAFARGQLRSYMRTPVAFYVAQLLSQEGTPAVVMGTGNFDEDG-Y-LGYFCKAG-------- 184 (294)
T ss_pred HHHHHHHHhhh-h-cccchhhHHHhHHHHHHhHHHHHHHHHHhhcCCCeEEECCCCchhhh-H-hchHhhcC--------
Confidence 2222222111 0 000000 000000001112112221 345788898 777731 1 12211111
Q ss_pred CCCCCeEEEEeCccCcHHHHHHHHHhCCCC
Q 012452 245 GGVGSLVKWNPVANVKGNDIWNFLRTMDVP 274 (463)
Q Consensus 245 ~~~~~~~k~~PI~dWt~~DVw~yi~~~~lp 274 (463)
.+..-++||++++..||+...+..++|
T Consensus 185 ---Dg~~d~~pia~L~K~eVr~LAr~l~lp 211 (294)
T PTZ00323 185 ---DGVVDVQLISDLHKSEVFLVARELGVP 211 (294)
T ss_pred ---CCCcCchhhcCCcHHHHHHHHHHcCCC
Confidence 246679999999999999999988765
No 220
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.77 E-value=0.00027 Score=60.02 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=77.5
Q ss_pred eeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHH---hcCCCeEEEEEEcCCCcHHHHHHcCCCCC-
Q 012452 353 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADK---LAGNGVKVGKFRADGDQKEYAKQKLQLGS- 428 (463)
Q Consensus 353 V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~---~~~~~v~f~~VD~d~~~~~l~~~~~~I~~- 428 (463)
|.+++.+++..+.. .+.+..+.|+.+ ..-......+.++|++ +++ ++.|+.+|.+.. .... +.|++..
T Consensus 1 ~~e~t~e~~~~~~~---~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kg-ki~Fv~~d~~~~-~~~~-~~fgl~~~ 72 (111)
T cd03072 1 VREITFENAEELTE---EGLPFLILFHDK--DDLESLKEFKQAVARQLISEKG-AINFLTADGDKF-RHPL-LHLGKTPA 72 (111)
T ss_pred CcccccccHHHHhc---CCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCc-eEEEEEEechHh-hhHH-HHcCCCHh
Confidence 46788888888775 666666667722 2346788999999999 988 799999999998 6677 8999986
Q ss_pred -CCEEEEEeCCCcCeeecC--CCCCCHHHHHHHHHHh
Q 012452 429 -FPTILFFPKHSSKPIKYP--SERRDVDSLMAFVDAL 462 (463)
Q Consensus 429 -~PTi~~f~~g~~~~~~y~--gg~~~~~~L~~fI~~l 462 (463)
+|.+.+..... ..+|. .+..+.++|.+|++.+
T Consensus 73 ~~P~i~i~~~~~--~~Ky~~~~~~~t~~~i~~Fv~~~ 107 (111)
T cd03072 73 DLPVIAIDSFRH--MYLFPDFEDVYVPGKLKQFVLDL 107 (111)
T ss_pred HCCEEEEEcchh--cCcCCCCccccCHHHHHHHHHHH
Confidence 99999987644 23342 2378999999999875
No 221
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=97.76 E-value=0.00018 Score=73.13 Aligned_cols=156 Identities=17% Similarity=0.112 Sum_probs=86.7
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCC---------cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH---
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL---------NPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL--- 179 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~---------fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~--- 179 (463)
+|+|+.|||-||+|. .|+.+.+.++.-+|+.+... .++-.+.++++++++|++++++.-. ..++..
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~-~~f~~~Vi~ 80 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQGYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLR-EEFWEEVIE 80 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETH-HHHHHHTHH
T ss_pred eEEEEccCCHHHHHHHHHHHhhcccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChH-HHHHHHHHH
Confidence 589999999998776 88888999988888877754 2456888999999999999887322 223332
Q ss_pred --HH--hcCCCCCCccchhhhhhchhhhHHHHHHcc---CceEEEeee----ccCCcccccCCCceecCCC----CcCCc
Q 012452 180 --VR--SKGLFSFYEDGHQECCRVRKVRPLRRALKG---LRAWITGQR----KDQSPGTRSEIPVVQVDPV----FEGLE 244 (463)
Q Consensus 180 --~~--~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~---~~~~itG~R----r~ES~~~Ra~~~~~~~d~~----~~~~~ 244 (463)
+. ..|. .| +.--.|....|..-|.++... .+.+.||.= .++.. .+..+. ...|+. |.-..
T Consensus 81 ~f~~~Y~~G~--TP-NPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~~~-~~~~L~-r~~D~~KDQSYfL~~ 155 (356)
T PF03054_consen 81 PFLDEYRKGR--TP-NPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDEKN-GRYRLL-RGADPKKDQSYFLSR 155 (356)
T ss_dssp HHHHHHHTT-------HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES-T-TEEEEE-E-SSTTC--GGGGTT
T ss_pred HHHHHHhcCC--CC-ChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeeccC-CceEEE-ecCCCCCCceEEEEe
Confidence 22 2332 12 123467777899988888875 457888852 22211 111110 011221 10000
Q ss_pred CCC-CCeEEEEeCccCcHHHHHHHHHhCCCC
Q 012452 245 GGV-GSLVKWNPVANVKGNDIWNFLRTMDVP 274 (463)
Q Consensus 245 ~~~-~~~~k~~PI~dWt~~DVw~yi~~~~lp 274 (463)
-.. --..-+.||-+++.+||....++.++|
T Consensus 156 l~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~ 186 (356)
T PF03054_consen 156 LPQEQLSRLIFPLGELTKEEVREIAREAGLP 186 (356)
T ss_dssp --HHHHCCEE-TCCCS-HHHHHHHHHHCT-T
T ss_pred cCHHHHHhhcCCCCCCCHHHHHHHHHhcCCc
Confidence 000 001247899999999999999999998
No 222
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.71 E-value=0.0002 Score=68.15 Aligned_cols=92 Identities=12% Similarity=0.235 Sum_probs=66.7
Q ss_pred CCcEE-EEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------------HHHHHHc
Q 012452 371 QEPWL-VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------------KEYAKQK 423 (463)
Q Consensus 371 ~k~vl-V~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~--------------------------~~l~~~~ 423 (463)
++.++ +.|+++||+.|....+.|.++++++...++.++.|.+|... .+++ +.
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia-~~ 111 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA-KR 111 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH-HH
Confidence 55544 47889999999999999999999998667888888876431 3455 56
Q ss_pred CCCC-------CCCEEEEEeCCCcCee--ecC-CCCCCHHHHHHHHHHhC
Q 012452 424 LQLG-------SFPTILFFPKHSSKPI--KYP-SERRDVDSLMAFVDALR 463 (463)
Q Consensus 424 ~~I~-------~~PTi~~f~~g~~~~~--~y~-gg~~~~~~L~~fI~~l~ 463 (463)
|++. ..|+.++++..+.+.. .+. .-.++.+++.+.|++++
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 7763 3688888975554321 122 12379999999998774
No 223
>PRK13189 peroxiredoxin; Provisional
Probab=97.70 E-value=0.00019 Score=68.52 Aligned_cols=93 Identities=18% Similarity=0.252 Sum_probs=66.7
Q ss_pred CCC-cEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------cHHHHHH
Q 012452 370 RQE-PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQ 422 (463)
Q Consensus 370 ~~k-~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~--------------------------~~~l~~~ 422 (463)
.++ .+|+.|+++||+.|....+.|.+++++++..++.++.|.+|.. +.+++ +
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia-~ 112 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA-K 112 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH-H
Confidence 355 4555778999999999999999999999876788888876632 13566 6
Q ss_pred cCCCC-------CCCEEEEEeCCCcC-eeec-C-CCCCCHHHHHHHHHHhC
Q 012452 423 KLQLG-------SFPTILFFPKHSSK-PIKY-P-SERRDVDSLMAFVDALR 463 (463)
Q Consensus 423 ~~~I~-------~~PTi~~f~~g~~~-~~~y-~-gg~~~~~~L~~fI~~l~ 463 (463)
.|++. .+|++++++..+.+ .+.+ . ...++.+++.+.|++++
T Consensus 113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 77864 46889999755543 2222 1 12478999999998763
No 224
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=97.67 E-value=0.00021 Score=66.78 Aligned_cols=142 Identities=19% Similarity=0.192 Sum_probs=77.1
Q ss_pred CcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCC-CCcHHHHHHHHHHHHHh---C--CcEEEEcCChHHHHHHHHhcC
Q 012452 112 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTG-RLNPETYRFFDEVEKHF---G--IRIEYMFPDAVEVQALVRSKG 184 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg-~~fpeT~~~~~~~~~~~---g--l~i~~~~p~~~~~~~~~~~~g 184 (463)
+++++.+|||.||.|. .++.+.+.++..+|.+++ +..+.+.+.++++.+.+ + .++..+.-+..++...+..+.
T Consensus 4 gk~l~LlSGGiDSpVAa~lm~krG~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~~~~ 83 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLMMKRGCEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEILRGV 83 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHHHCBT-EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHHHHS
T ss_pred ceEEEEecCCccHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHHhcC
Confidence 4578899999999766 888889999999999954 33344445555555443 3 355554445444444433332
Q ss_pred CCCCCccchhhhhhchhhhHHHHHHc-----cCceEEEe----eeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEe
Q 012452 185 LFSFYEDGHQECCRVRKVRPLRRALK-----GLRAWITG----QRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP 255 (463)
Q Consensus 185 ~~~~~~~~~~~Cc~~~Kv~Pl~r~l~-----~~~~~itG----~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~P 255 (463)
.....|-.+|..-++.+-+ |.++++|| +|.+| +..++..++... +..-++|
T Consensus 84 -------~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQvaSQ---Tl~nL~~i~~~~----------~~pIlRP 143 (197)
T PF02568_consen 84 -------KERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQVASQ---TLENLRVIESAS----------DLPILRP 143 (197)
T ss_dssp --------GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSSTTS-----HHHHHHHGGG------------S-EE-T
T ss_pred -------CccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHHHhh---hHHHHhhhhccc----------CCceeCC
Confidence 2233455555555544442 55688876 44322 234444433221 3567999
Q ss_pred CccCcHHHHHHHHHhCCC
Q 012452 256 VANVKGNDIWNFLRTMDV 273 (463)
Q Consensus 256 I~dWt~~DVw~yi~~~~l 273 (463)
|..++.+||-+..++-|.
T Consensus 144 Lig~dK~EIi~~Ar~Igt 161 (197)
T PF02568_consen 144 LIGFDKEEIIEIARKIGT 161 (197)
T ss_dssp TTT--HHHHHHHHHHTT-
T ss_pred cCCCCHHHHHHHHHHhCc
Confidence 999999999999999886
No 225
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.66 E-value=6.7e-05 Score=69.44 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=39.2
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 413 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d 413 (463)
.++++||.|||+||++|++ .|.|+++.++|++.++.++.|.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 5799999999999999975 889999999998778999999885
No 226
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.65 E-value=0.00013 Score=58.53 Aligned_cols=75 Identities=12% Similarity=0.298 Sum_probs=54.1
Q ss_pred EEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCC--CCCCCEEEEEeCCCcCeeecCCC
Q 012452 374 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQ--LGSFPTILFFPKHSSKPIKYPSE 448 (463)
Q Consensus 374 vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~---~~l~~~~~~--I~~~PTi~~f~~g~~~~~~y~gg 448 (463)
-++.|+.+||++|+.....|+++..++. ++.+..+|++.+. .++. ...+ +..+|+++ .+|+ . .||
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~~~~~~~~el~-~~~~~~~~~vP~if--i~g~--~---igg 71 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD--DFDYRYVDIHAEGISKADLE-KTVGKPVETVPQIF--VDQK--H---IGG 71 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc--CCcEEEEECCCChHHHHHHH-HHHCCCCCcCCEEE--ECCE--E---EcC
Confidence 3678999999999999999999998764 4889999988751 2444 3333 57899985 4565 2 232
Q ss_pred CCCHHHHHHHHHH
Q 012452 449 RRDVDSLMAFVDA 461 (463)
Q Consensus 449 ~~~~~~L~~fI~~ 461 (463)
.++|.+++++
T Consensus 72 ---~~~~~~~~~~ 81 (85)
T PRK11200 72 ---CTDFEAYVKE 81 (85)
T ss_pred ---HHHHHHHHHH
Confidence 4667776654
No 227
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.65 E-value=0.00093 Score=57.53 Aligned_cols=100 Identities=13% Similarity=0.251 Sum_probs=76.1
Q ss_pred ChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC-EEEEE
Q 012452 357 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP-TILFF 435 (463)
Q Consensus 357 t~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~P-Ti~~f 435 (463)
+.-..++.+. ...++.++|-|..+|-+.|.+|...+.+++++.++ -..++.||+++- +++. +.|.+. -| |++||
T Consensus 7 s~~~VDqAI~-~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~V-pdfn-~~yel~-dP~tvmFF 81 (133)
T PF02966_consen 7 SGWHVDQAIL-SEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDEV-PDFN-QMYELY-DPCTVMFF 81 (133)
T ss_dssp SHHHHHHHHH-H-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTT-HCCH-HHTTS--SSEEEEEE
T ss_pred ccchHHHHHh-ccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEcccc-hhhh-cccccC-CCeEEEEE
Confidence 3456777765 45689999999999999999999999999999988 688999999999 9998 899999 66 67777
Q ss_pred eCCCcCeeecCCC--------CCCHHHHHHHHHH
Q 012452 436 PKHSSKPIKYPSE--------RRDVDSLMAFVDA 461 (463)
Q Consensus 436 ~~g~~~~~~y~gg--------~~~~~~L~~fI~~ 461 (463)
.+++-..+.+..| ..+.+++++.|+.
T Consensus 82 ~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 82 FRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp ETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred ecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence 6776444444432 2346777777664
No 228
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.64 E-value=0.00022 Score=54.47 Aligned_cols=67 Identities=24% Similarity=0.389 Sum_probs=46.3
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcC----CCCCCCEEEEEeCCCcCeeecCCCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKL----QLGSFPTILFFPKHSSKPIKYPSERR 450 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~----~I~~~PTi~~f~~g~~~~~~y~gg~~ 450 (463)
++.|+++||++|+.+...+.+. ++.+..+|++.+ .... +++ ++.++|++++ +|+ ...| .
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-------~i~~~~~~i~~~-~~~~-~~~~~~~~~~~vP~i~~--~~~----~i~g--~ 64 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-------GIPFEEVDVDED-PEAL-EELKKLNGYRSVPVVVI--GDE----HLSG--F 64 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-------CCCeEEEeCCCC-HHHH-HHHHHHcCCcccCEEEE--CCE----EEec--C
Confidence 5789999999999988877652 477788888876 4443 333 6789999975 332 2223 4
Q ss_pred CHHHHHHH
Q 012452 451 DVDSLMAF 458 (463)
Q Consensus 451 ~~~~L~~f 458 (463)
+.+.|.++
T Consensus 65 ~~~~l~~~ 72 (73)
T cd02976 65 RPDKLRAL 72 (73)
T ss_pred CHHHHHhh
Confidence 56666655
No 229
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=97.62 E-value=0.00024 Score=67.73 Aligned_cols=127 Identities=15% Similarity=0.174 Sum_probs=77.7
Q ss_pred EEEechhHHHHHH-HHHHHcCCCeE-EEEEeCCC------CcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCC
Q 012452 115 AIAFSGAEDVALI-EYAHLTGRPFR-VFSLDTGR------LNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLF 186 (463)
Q Consensus 115 ~vafSGGKDS~vl-~L~~~~~~~i~-vi~~DTg~------~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~ 186 (463)
+++|||||||+++ +++.+.+.++. ++++++.. +-. -.+.++.+++.+|++++++.-......
T Consensus 1 ~vl~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~-~~~~~~~~A~~lgip~~~i~~~~~~~~--------- 70 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALEEGHEVRCLITVVPENEESYMFHTP-NIELTRLQAEALGIPLVKIETSGEKEK--------- 70 (218)
T ss_pred CeeecCcHHHHHHHHHHHHcCCEEEEEEEeccCCCCccccCCC-CHHHHHHHHHHhCCCEEEEECCCCChH---------
Confidence 3689999999766 77777776663 55665431 222 347789999999999876642210000
Q ss_pred CCCccchhhhhhchhhhHHHHHHc-cCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCccCcHHHHH
Q 012452 187 SFYEDGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIW 265 (463)
Q Consensus 187 ~~~~~~~~~Cc~~~Kv~Pl~r~l~-~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~DVw 265 (463)
+ ... + ..-+.++.+ +.+.+++|.-.++- .|.+...+.-. .++.-+.||..++.+++.
T Consensus 71 --~--~~~----l--~~~l~~~~~~g~~~vv~G~i~sd~--~~~~~e~v~~~----------~gl~~~~PLw~~~~~el~ 128 (218)
T TIGR03679 71 --E--VED----L--KGALKELKREGVEGIVTGAIASRY--QKSRIERICEE----------LGLKVFAPLWGRDQEEYL 128 (218)
T ss_pred --H--HHH----H--HHHHHHHHHcCCCEEEECCcccHh--HHHHHHHHHHh----------CCCeEEeehhcCCHHHHH
Confidence 0 000 0 011122222 67789999988764 34443322211 357789999999999998
Q ss_pred HHHHhCCC
Q 012452 266 NFLRTMDV 273 (463)
Q Consensus 266 ~yi~~~~l 273 (463)
.=+...|+
T Consensus 129 ~~~~~~G~ 136 (218)
T TIGR03679 129 RELVERGF 136 (218)
T ss_pred HHHHHCCC
Confidence 87665543
No 230
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.60 E-value=0.00075 Score=55.19 Aligned_cols=89 Identities=19% Similarity=0.347 Sum_probs=68.8
Q ss_pred hhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCC
Q 012452 359 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH 438 (463)
Q Consensus 359 ~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g 438 (463)
+.++.++. .+++++|-|+.++|. .+...|.++|..+.+ .+.|+.+. + .++. +.+.+. .|++++|++.
T Consensus 8 ~~l~~~~~---~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-~~~F~~~~---~-~~~~-~~~~~~-~~~i~l~~~~ 74 (97)
T cd02981 8 EELEKFLD---KDDVVVVGFFKDEES---EEYKTFEKVAESLRD-DYGFGHTS---D-KEVA-KKLKVK-PGSVVLFKPF 74 (97)
T ss_pred HHHHHHhc---cCCeEEEEEECCCCc---HHHHHHHHHHHhccc-CCeEEEEC---h-HHHH-HHcCCC-CCceEEeCCc
Confidence 44555554 788999999999987 567789999999986 58887766 3 6777 677775 5999999775
Q ss_pred CcCeeecCCCCCCHHHHHHHHHH
Q 012452 439 SSKPIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 439 ~~~~~~y~gg~~~~~~L~~fI~~ 461 (463)
......|.| ..+.++|.+||..
T Consensus 75 ~~~~~~y~g-~~~~~~l~~fi~~ 96 (97)
T cd02981 75 EEEPVEYDG-EFTEESLVEFIKD 96 (97)
T ss_pred ccCCccCCC-CCCHHHHHHHHHh
Confidence 444678988 5779999999974
No 231
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=97.59 E-value=0.00091 Score=63.14 Aligned_cols=171 Identities=16% Similarity=0.235 Sum_probs=103.8
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCcc
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED 191 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~ 191 (463)
+.+|-||||-||+++ .++.+....+..+++|-|.-...-++.++++++++|++.+++.-+.- .+ + .|.......
T Consensus 4 kavvl~SGG~DStt~l~~a~~~~~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~~--~~-~--~~saLtd~~ 78 (222)
T COG0603 4 KAVVLLSGGLDSTTCLAWAKKEGYEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDLL--GE-I--GGSALTDDS 78 (222)
T ss_pred eEEEEccCChhHHHHHHHHHhcCCEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhHH--hh-c--CCCcCcCCC
Confidence 467899999998765 78888888999999999976699999999999999999887732211 11 1 111110000
Q ss_pred ----chhhhhh--chhhhHHHHHHc-----------cCceEEEeeeccCCcccccCCCceecC--CCCcCC--cCCCCCe
Q 012452 192 ----GHQECCR--VRKVRPLRRALK-----------GLRAWITGQRKDQSPGTRSEIPVVQVD--PVFEGL--EGGVGSL 250 (463)
Q Consensus 192 ----~~~~Cc~--~~Kv~Pl~r~l~-----------~~~~~itG~Rr~ES~~~Ra~~~~~~~d--~~~~~~--~~~~~~~ 250 (463)
.....-. -.-.-|.+..+- +.+.+++|.-..|.. ..|-.... ..++.. .+...++
T Consensus 79 ~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~s----gYPDcrpefi~a~~~~~~l~~~~~~ 154 (222)
T COG0603 79 IDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDFS----GYPDCRPEFIEALNEALNLGTEKGV 154 (222)
T ss_pred ccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccccC----CCCCCCHHHHHHHHHHHHhhccCCc
Confidence 0000000 000123222221 446899999888863 23221100 000000 0111233
Q ss_pred E-EEEeCccCcHHHHHHHHHhCCCCccchhccCCccc---CcccCCc
Q 012452 251 V-KWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISI---GCEPCTR 293 (463)
Q Consensus 251 ~-k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~si---GC~~Ct~ 293 (463)
. -..||.+++..|+|.--.+.++|+..=+.+ |.-. +|-.|..
T Consensus 155 ~~i~aPl~~l~Ka~iv~l~~elg~~~~~T~SC-Y~g~~~~~CG~C~s 200 (222)
T COG0603 155 RIIHAPLMELTKAEIVKLADELGVPLELTWSC-YNGGEGDHCGECES 200 (222)
T ss_pred cEEeCCeeeccHHHHHHHHHHhCCcchhceEE-eCCCCCCCCCCCHH
Confidence 3 479999999999999999999999877765 4333 6666643
No 232
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=7.3e-05 Score=69.86 Aligned_cols=67 Identities=16% Similarity=0.306 Sum_probs=62.8
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCc
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSS 440 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~ 440 (463)
.++..++.|||+||..|+.|...++.+++..+ ++.|++++.+.. ++++ ..+.|...|++.++..|.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~--~~~~~k~~a~~~-~eis-~~~~v~~vp~~~~~~~~~~ 82 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK--NAQFLKLEAEEF-PEIS-NLIAVEAVPYFVFFFLGEK 82 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh--hheeeeehhhhh-hHHH-HHHHHhcCceeeeeecchh
Confidence 78899999999999999999999999999994 599999999999 9999 9999999999999988874
No 233
>PRK00876 nadE NAD synthetase; Reviewed
Probab=97.57 E-value=0.0025 Score=64.20 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=53.8
Q ss_pred HHHHHHHHHH-cC-CcEEEEechhHHHHHH-HHHHHc-C-CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEc
Q 012452 100 LEIMDRALEK-FG-NDIAIAFSGAEDVALI-EYAHLT-G-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF 170 (463)
Q Consensus 100 ~eil~~~~~~-~~-~~i~vafSGGKDS~vl-~L~~~~-~-~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~ 170 (463)
.+.|+..++. .+ .+++|++|||.||+++ .|+.++ + .++..++++++..-++..++++.+++++|++.+.+.
T Consensus 20 ~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~~~~~~s~~~e~~~A~~lA~~LGi~~~~i~ 95 (326)
T PRK00876 20 RAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMPERDSSPESLRLGREVAEHLGVEYVVED 95 (326)
T ss_pred HHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHhhCCCcEEEEEecCCCCChHHHHHHHHHHHHcCCCEEEEE
Confidence 3455555555 34 4699999999998776 777664 4 357777888876668889999999999999987654
No 234
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.53 E-value=0.00058 Score=64.08 Aligned_cols=93 Identities=10% Similarity=0.195 Sum_probs=68.2
Q ss_pred CCCcEEEEEec-CCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------cHHHHH
Q 012452 370 RQEPWLVVLYA-PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK 421 (463)
Q Consensus 370 ~~k~vlV~FyA-~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~---------------------------~~~l~~ 421 (463)
.++.++|+||+ .||+.|....+.|.++++++...++.++.|++|.. +.+++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia- 113 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA- 113 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH-
Confidence 46789999995 88999999999999999999877789998887632 13466
Q ss_pred HcCCCC------CCCEEEEEeCCCcCeeec-C--CCCCCHHHHHHHHHHhC
Q 012452 422 QKLQLG------SFPTILFFPKHSSKPIKY-P--SERRDVDSLMAFVDALR 463 (463)
Q Consensus 422 ~~~~I~------~~PTi~~f~~g~~~~~~y-~--gg~~~~~~L~~fI~~l~ 463 (463)
+.|++. .+|+.+++++.+...... . ...++.+++.+.|+.++
T Consensus 114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 778875 468999997665422111 1 12478888888887663
No 235
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.49 E-value=0.0027 Score=55.47 Aligned_cols=105 Identities=14% Similarity=0.234 Sum_probs=75.8
Q ss_pred CeeecChhhH-HHHHhhcCCCCcEEEEEecC--CChh-H-HHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCC
Q 012452 352 NLVTLNRTGM-ENLARLDHRQEPWLVVLYAP--WCQF-C-QAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQL 426 (463)
Q Consensus 352 ~V~~lt~~~f-~~~i~~~~~~k~vlV~FyA~--wC~~-C-~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I 426 (463)
.|++|+.+++ ++.-. .+...+|-|.-. -|.. + ..+...|.++|++|+++.+.|+.+|.+.. ..+. +.|+|
T Consensus 3 ~~~~l~~~~~~~~~C~---~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~-~~~~-~~fgl 77 (130)
T cd02983 3 EIIELTSEDVFEETCE---EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ-LDLE-EALNI 77 (130)
T ss_pred ceEEecCHHHHHhhcc---CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc-HHHH-HHcCC
Confidence 5788887665 43332 355566666421 1222 3 45788999999999993499999999998 7788 89999
Q ss_pred C--CCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 427 G--SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 427 ~--~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
. .+|+++++...+.+...+.+ ..+.++|.+|++.+
T Consensus 78 ~~~~~P~v~i~~~~~~KY~~~~~-~~t~e~i~~Fv~~~ 114 (130)
T cd02983 78 GGFGYPAMVAINFRKMKFATLKG-SFSEDGINEFLREL 114 (130)
T ss_pred CccCCCEEEEEecccCccccccC-ccCHHHHHHHHHHH
Confidence 5 59999999775532222555 79999999999875
No 236
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.46 E-value=0.00062 Score=65.49 Aligned_cols=81 Identities=14% Similarity=0.310 Sum_probs=59.9
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEc-------------------------------------
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA------------------------------------- 412 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~------------------------------------- 412 (463)
.++.+|+.|.-+.||+|+++.+.+.++.+ . ++.+..+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~---~-~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA---L-GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc---C-CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 46788999999999999999998887643 1 244333211
Q ss_pred -------CCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 413 -------DGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 413 -------d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
+.+ .+++ ++++|+++||++ |.+|+ .+ .| ..+.++|.++|++.
T Consensus 182 ~~c~~~v~~~-~~la-~~lgi~gTPtiv-~~~G~--~~--~G-~~~~~~L~~~l~~~ 230 (232)
T PRK10877 182 ASCDVDIADH-YALG-VQFGVQGTPAIV-LSNGT--LV--PG-YQGPKEMKAFLDEH 230 (232)
T ss_pred ccccchHHHh-HHHH-HHcCCccccEEE-EcCCe--Ee--eC-CCCHHHHHHHHHHc
Confidence 111 5678 889999999998 77776 22 44 78999999999875
No 237
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.46 E-value=0.0012 Score=56.06 Aligned_cols=99 Identities=11% Similarity=0.148 Sum_probs=71.4
Q ss_pred eecChhhHHHHHhhcCCCCcEEEEEe----cCCChhHHHhHHHHHHHHHHhc-CCCeEEEEEEcCCCcHHHHHHcCCCCC
Q 012452 354 VTLNRTGMENLARLDHRQEPWLVVLY----APWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQKEYAKQKLQLGS 428 (463)
Q Consensus 354 ~~lt~~~f~~~i~~~~~~k~vlV~Fy----A~wC~~C~~~~p~l~~la~~~~-~~~v~f~~VD~d~~~~~l~~~~~~I~~ 428 (463)
.++|.++..... ..+.++.|| +..-..-..+...+.++|++++ + ++.|+.+|.++. .... +.|++..
T Consensus 2 ~~~~~en~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g-ki~Fv~~D~~~~-~~~l-~~fgl~~ 73 (111)
T cd03073 2 GHRTKDNRAQFT-----KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR-KLNFAVADKEDF-SHEL-EEFGLDF 73 (111)
T ss_pred CeeccchHHHhc-----cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC-eEEEEEEcHHHH-HHHH-HHcCCCc
Confidence 356777777754 234444443 2233445678899999999999 6 799999999988 6677 8999974
Q ss_pred ----CCEEEEEeCCCcCeeecCCCCC-CHHHHHHHHHHh
Q 012452 429 ----FPTILFFPKHSSKPIKYPSERR-DVDSLMAFVDAL 462 (463)
Q Consensus 429 ----~PTi~~f~~g~~~~~~y~gg~~-~~~~L~~fI~~l 462 (463)
+|++.++..... -....+ .. +.++|.+|++++
T Consensus 74 ~~~~~P~~~i~~~~~~-KY~~~~-~~~t~e~i~~F~~~f 110 (111)
T cd03073 74 SGGEKPVVAIRTAKGK-KYVMEE-EFSDVDALEEFLEDF 110 (111)
T ss_pred ccCCCCEEEEEeCCCC-ccCCCc-ccCCHHHHHHHHHHh
Confidence 999999875332 222344 57 899999999875
No 238
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.45 E-value=0.00067 Score=73.64 Aligned_cols=95 Identities=12% Similarity=0.223 Sum_probs=73.4
Q ss_pred CeeecChhhHHHHHhhcCCCCcE-EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012452 352 NLVTLNRTGMENLARLDHRQEPW-LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 430 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~v-lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~P 430 (463)
.-..|+.+..+.+.. =++++ +-.|.+++|++|......+++++...++ +..-.+|.... ++++ ++|+|.++|
T Consensus 459 ~~~~l~~~~~~~i~~---~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~--i~~~~i~~~~~-~~~~-~~~~v~~vP 531 (555)
T TIGR03143 459 PGQPLGEELLEKIKK---ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN--VEAEMIDVSHF-PDLK-DEYGIMSVP 531 (555)
T ss_pred CCCCCCHHHHHHHHh---cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC--ceEEEEECccc-HHHH-HhCCceecC
Confidence 444555555555443 24555 5566899999999999999999988765 99999999999 9999 999999999
Q ss_pred EEEEEeCCCcCeeecCCCCCCHHHHHHHH
Q 012452 431 TILFFPKHSSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 431 Ti~~f~~g~~~~~~y~gg~~~~~~L~~fI 459 (463)
++++ +|+ +.+.| ..+.++|.++|
T Consensus 532 ~~~i--~~~---~~~~G-~~~~~~~~~~~ 554 (555)
T TIGR03143 532 AIVV--DDQ---QVYFG-KKTIEEMLELI 554 (555)
T ss_pred EEEE--CCE---EEEee-CCCHHHHHHhh
Confidence 9975 444 34556 67899988876
No 239
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.45 E-value=0.0008 Score=72.40 Aligned_cols=96 Identities=10% Similarity=0.099 Sum_probs=72.8
Q ss_pred eeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEE
Q 012452 353 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432 (463)
Q Consensus 353 V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi 432 (463)
-..|+++..+.+-+ . .+..-+-.|+++.|++|......+++++...+ +|.+-.||...+ ++++ ++|+|.++|++
T Consensus 100 ~~~l~~~~~~~i~~-~-~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~~~~-~~~~-~~~~v~~VP~~ 173 (517)
T PRK15317 100 PPKLDQEVIEQIKA-L-DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDGALF-QDEV-EARNIMAVPTV 173 (517)
T ss_pred CCCCCHHHHHHHHh-c-CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEchhC-HhHH-HhcCCcccCEE
Confidence 33455555555433 1 23445888999999999999999999998765 499999999999 9999 99999999999
Q ss_pred EEEeCCCcCeeecCCCCCCHHHHHHHHH
Q 012452 433 LFFPKHSSKPIKYPSERRDVDSLMAFVD 460 (463)
Q Consensus 433 ~~f~~g~~~~~~y~gg~~~~~~L~~fI~ 460 (463)
++ +++ ..+.| ..+.++|.+.+.
T Consensus 174 ~i--~~~---~~~~g-~~~~~~~~~~~~ 195 (517)
T PRK15317 174 FL--NGE---EFGQG-RMTLEEILAKLD 195 (517)
T ss_pred EE--CCc---EEEec-CCCHHHHHHHHh
Confidence 65 454 33555 677788777765
No 240
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.0042 Score=62.73 Aligned_cols=164 Identities=13% Similarity=0.054 Sum_probs=101.0
Q ss_pred CcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCC-------CcHHHHHHHHHHHHHhCCcEEEEcCChHHHHH-----
Q 012452 112 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGR-------LNPETYRFFDEVEKHFGIRIEYMFPDAVEVQA----- 178 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~-------~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~----- 178 (463)
.+++|++|||-||.|. .|+.+.+.++.-+|+-... ...+=++.++++++++|++++++.=.. .+++
T Consensus 4 ~kV~v~mSGGVDSSVaA~lLk~QGyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~-~y~~~V~~~ 82 (356)
T COG0482 4 KKVLVGMSGGVDSSVAAYLLKEQGYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEK-EFWNKVFEY 82 (356)
T ss_pred cEEEEEccCCHHHHHHHHHHHHcCCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHH-HHHHHHHHH
Confidence 4699999999997655 8888999998888776655 344667789999999999998873221 2332
Q ss_pred HHHhcCCCCCCccchhhhhhchhhhHHHHHHccC--ceEEEeeeccCCc-ccccCCCceecCC----CCcCCcCCC-CCe
Q 012452 179 LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSP-GTRSEIPVVQVDP----VFEGLEGGV-GSL 250 (463)
Q Consensus 179 ~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~--~~~itG~Rr~ES~-~~Ra~~~~~~~d~----~~~~~~~~~-~~~ 250 (463)
++.+++.-..|. .--.|....|...+...+.++ +.++||.=.-..+ ..+..+.. ..|. +|.-..... .--
T Consensus 83 f~~~Y~~G~TPN-Pci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r-~~D~~KDQsYfL~~~~~~ql~ 160 (356)
T COG0482 83 FLAEYKAGKTPN-PCILCNKEIKFKALLDYAKELGADYIATGHYARQREDEGIELLLR-GVDLNKDQSYFLYALSQEQLE 160 (356)
T ss_pred HHHHHhCCCCCC-cchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecCCccccccc-CCCcccchhheecccCHHHHh
Confidence 334443322221 223566889999988887754 5788885332221 01111100 0111 110000000 001
Q ss_pred EEEEeCccCcHHHHHHHHHhCCCCccch
Q 012452 251 VKWNPVANVKGNDIWNFLRTMDVPINSL 278 (463)
Q Consensus 251 ~k~~PI~dWt~~DVw~yi~~~~lp~npL 278 (463)
....||-+++..+|-..-.+.++|...-
T Consensus 161 ~~lFPlG~l~K~evR~iA~~~gL~~a~K 188 (356)
T COG0482 161 RLLFPLGDLEKLEVRPIAAEKGLPTAKK 188 (356)
T ss_pred hccccCCCCCHHHHHHHHHHcCCCccCc
Confidence 1267999999999999999999977433
No 241
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=97.35 E-value=0.0012 Score=64.56 Aligned_cols=108 Identities=17% Similarity=0.246 Sum_probs=67.0
Q ss_pred CCcEEEEechhHHHHHH-HHHHHcCC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH----hcC
Q 012452 111 GNDIAIAFSGAEDVALI-EYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR----SKG 184 (463)
Q Consensus 111 ~~~i~vafSGGKDS~vl-~L~~~~~~-~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~----~~g 184 (463)
+.+|.+.+|||.||+++ .++.+... ++..++++.+....+-.++++.+++++|++.+.+......+..... ...
T Consensus 15 ~~~v~~~LSGGlDSs~va~~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (269)
T cd01991 15 DVPVGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFEGSDEREYARRVAEHLGTEHHEVEFTPADLLAALPDVIWELD 94 (269)
T ss_pred CCceEEeecccHHHHHHHHHHHHhhCCCCceEEEeeCCCCCChHHHHHHHHHHhCCcceEEEcCHHHHHHHHHHHHHHhC
Confidence 35699999999998766 66666543 3777777776543334789999999999998887665544433322 111
Q ss_pred CCCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCc
Q 012452 185 LFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSP 225 (463)
Q Consensus 185 ~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~ 225 (463)
.+ ...|.... ..-+.+..+ +.+++++|.=.||-.
T Consensus 95 ~p------~~~~~~~~-~~~l~~~a~~~~~~v~l~G~g~Delf 130 (269)
T cd01991 95 EP------FADSSAIP-LYLLSRLARKHGIKVVLSGEGADELF 130 (269)
T ss_pred CC------CCCcHHHH-HHHHHHHHHHhCCEEEEecCCccccc
Confidence 11 11122221 122233333 337999999888853
No 242
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.31 E-value=0.00087 Score=49.91 Aligned_cols=52 Identities=23% Similarity=0.444 Sum_probs=40.1
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHH---HHcCCCCCCCEEEE
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA---KQKLQLGSFPTILF 434 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~---~~~~~I~~~PTi~~ 434 (463)
++.|..+||++|+..+..|++. ++.+-.+|++.+ .+.. .+..+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-------~i~y~~~dv~~~-~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-------GIPYEEVDVDED-EEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-------TBEEEEEEGGGS-HHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-------CCeeeEcccccc-hhHHHHHHHHcCCCccCEEEE
Confidence 5789999999999998888442 588999999887 3332 03348999999985
No 243
>PRK05370 argininosuccinate synthase; Validated
Probab=97.29 E-value=0.0027 Score=65.73 Aligned_cols=151 Identities=17% Similarity=0.231 Sum_probs=86.1
Q ss_pred CCcEEEEechhHH-HHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHH---HHhcCC
Q 012452 111 GNDIAIAFSGAED-VALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQAL---VRSKGL 185 (463)
Q Consensus 111 ~~~i~vafSGGKD-S~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl-~i~~~~p~~~~~~~~---~~~~g~ 185 (463)
+++|+++||||=| |+++..+++.+.++..+++|+|-.-.+=++.+++-+..+|. +++++--.......+ +..+.+
T Consensus 11 ~~KVvLAYSGGLDTSv~l~wL~e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i~aI~anA~ 90 (447)
T PRK05370 11 GQRVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGIAAIQCGAF 90 (447)
T ss_pred CCEEEEEecCCchHHHHHHHHHhcCCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHHHHHHcCCc
Confidence 3679999999999 45566666667789999999995212446778888888998 566653222222222 222211
Q ss_pred C-----CCCcc---chhhhhhchhhhHHHHHHccCceEEEeee---ccCCcccccCCCceecCCCCcCCcCCCCCeEEEE
Q 012452 186 F-----SFYED---GHQECCRVRKVRPLRRALKGLRAWITGQR---KDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWN 254 (463)
Q Consensus 186 ~-----~~~~~---~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~R---r~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~ 254 (463)
. ..|.- -.+- +-..++....+. .+.+++.=|-. -|| -|..+.+...+| .+-.+.
T Consensus 91 Y~~~~e~~Y~l~t~LaRp-lia~~lv~~A~~-~ga~aIAHG~TGKGNDQ---vRFE~~~~aL~P----------~l~Via 155 (447)
T PRK05370 91 HISTGGVTYFNTTPLGRA-VTGTMLVAAMKE-DGVNIWGDGSTYKGNDI---ERFYRYGLLTNP----------ELKIYK 155 (447)
T ss_pred cccccCccccCCCcchHH-HHHHHHHHHHHH-hCCcEEEEcCCCCCCch---HHHHHHHHHhCC----------CCeEec
Confidence 0 00110 0111 111111111111 13456654432 222 355444433443 455789
Q ss_pred eCccC-------cHHHHHHHHHhCCCCcc
Q 012452 255 PVANV-------KGNDIWNFLRTMDVPIN 276 (463)
Q Consensus 255 PI~dW-------t~~DVw~yi~~~~lp~n 276 (463)
|.-+| +.+|--+|+++||||+.
T Consensus 156 PwRd~~~~~~f~sR~e~i~Ya~~hGIpv~ 184 (447)
T PRK05370 156 PWLDQDFIDELGGRAEMSEFLIAHGFDYK 184 (447)
T ss_pred chhhhhcccccCCHHHHHHHHHHcCCCCC
Confidence 99998 78999999999999985
No 244
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.25 E-value=0.00068 Score=54.69 Aligned_cols=74 Identities=14% Similarity=0.261 Sum_probs=51.9
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCC--CCCCCEEEEEeCCCcCeeecCCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQ--LGSFPTILFFPKHSSKPIKYPSER 449 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~---~~l~~~~~~--I~~~PTi~~f~~g~~~~~~y~gg~ 449 (463)
++.|..+|||+|.+.+..|+++..++.+ +.+..+|++.+. .++. +..+ +.++|+++ -+|+ . .||
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~--i~~~~idi~~~~~~~~~l~-~~~g~~~~tVP~if--i~g~--~---igG- 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD--FEFRYIDIHAEGISKADLE-KTVGKPVETVPQIF--VDEK--H---VGG- 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC--CcEEEEECCCCHHHHHHHH-HHhCCCCCCcCeEE--ECCE--E---ecC-
Confidence 6789999999999999999988765544 778888887541 2444 4555 37899994 3454 1 233
Q ss_pred CCHHHHHHHHHH
Q 012452 450 RDVDSLMAFVDA 461 (463)
Q Consensus 450 ~~~~~L~~fI~~ 461 (463)
.++|.+++++
T Consensus 71 --~~dl~~~~~~ 80 (86)
T TIGR02183 71 --CTDFEQLVKE 80 (86)
T ss_pred --HHHHHHHHHh
Confidence 4677777654
No 245
>PRK02628 nadE NAD synthetase; Reviewed
Probab=97.21 E-value=0.0061 Score=67.71 Aligned_cols=144 Identities=15% Similarity=0.073 Sum_probs=82.6
Q ss_pred CCcEEEEechhHHHHHH-HHHHHc----C---CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 012452 111 GNDIAIAFSGAEDVALI-EYAHLT----G---RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS 182 (463)
Q Consensus 111 ~~~i~vafSGGKDS~vl-~L~~~~----~---~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~ 182 (463)
..+++|+.|||+||+++ .++.++ + .++..+++-+-...++|++.++++++.+|++++++.=. ..+......
T Consensus 361 ~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~mp~~~ss~~s~~~a~~la~~LGi~~~~i~I~-~~~~~~~~~ 439 (679)
T PRK02628 361 LKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTMPGFATTDRTKNNAVALMKALGVTAREIDIR-PAALQMLKD 439 (679)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEEcH-HHHHHHHHH
Confidence 36799999999999854 555544 3 45777777333356799999999999999998776322 112222221
Q ss_pred cCCCCCCccchhhh-------hhchhhhHHHHHHccCc--eEEEeeeccCCcccccCCCcee-cCCCCcCCcCCCCCeEE
Q 012452 183 KGLFSFYEDGHQEC-------CRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQ-VDPVFEGLEGGVGSLVK 252 (463)
Q Consensus 183 ~g~~~~~~~~~~~C-------c~~~Kv~Pl~r~l~~~~--~~itG~Rr~ES~~~Ra~~~~~~-~d~~~~~~~~~~~~~~k 252 (463)
.+.+ +. ++...| |...+..-|...-.... ++-|| .++|.. .... ... -| +.--
T Consensus 440 l~~~-~~-~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tg-n~sE~~--~Gy~-T~~~GD-----------~~~~ 502 (679)
T PRK02628 440 IGHP-FA-RGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTG-DLSELA--LGWC-TYGVGD-----------HMSH 502 (679)
T ss_pred hccc-cc-cCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCC-chhhHH--hCce-ecCCCC-----------cccc
Confidence 1111 00 001112 44444444444444333 44456 233331 1111 111 11 2335
Q ss_pred EEeCccCcHHHHHHHHHhCC
Q 012452 253 WNPVANVKGNDIWNFLRTMD 272 (463)
Q Consensus 253 ~~PI~dWt~~DVw~yi~~~~ 272 (463)
++||.+....+|+...+..+
T Consensus 503 ~~~~~~l~Kt~v~~l~~~~~ 522 (679)
T PRK02628 503 YNVNASVPKTLIQHLIRWVI 522 (679)
T ss_pred cccccCCcHHHHHHHHHHHH
Confidence 89999999999999888764
No 246
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.21 E-value=0.0023 Score=58.73 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=82.7
Q ss_pred CCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012452 351 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 430 (463)
Q Consensus 351 ~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~P 430 (463)
..|..++..+|.+-+...+.+-.|+|..|...-+.|.-+...|+.||.+|+. ++|+++=.... . ..|-=...|
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~at~c----I-pNYPe~nlP 163 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIPATTC----I-PNYPESNLP 163 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecccccc----c-CCCcccCCC
Confidence 4699999999988877677788899999999999999999999999999988 89998865443 1 245556799
Q ss_pred EEEEEeCCCcC-----eeecCCCCCCHHHHHHHHH
Q 012452 431 TILFFPKHSSK-----PIKYPSERRDVDSLMAFVD 460 (463)
Q Consensus 431 Ti~~f~~g~~~-----~~~y~gg~~~~~~L~~fI~ 460 (463)
|+++|..|..+ +..+.|...+.+++..++-
T Consensus 164 Tl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~ 198 (240)
T KOG3170|consen 164 TLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLV 198 (240)
T ss_pred eEEEeecchHHhheehhhhhcCCcCCHHHHHHHHH
Confidence 99999998743 3455555677888877764
No 247
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.21 E-value=0.0009 Score=52.83 Aligned_cols=57 Identities=18% Similarity=0.314 Sum_probs=41.8
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcH----HHHHHcCCCCCCCEEEEEeCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK----EYAKQKLQLGSFPTILFFPKHS 439 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~----~l~~~~~~I~~~PTi~~f~~g~ 439 (463)
++.|+++|||+|+.+...|+++.. .+.++.+|.+.+.. .+. +..++.++|++ |.+|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~-~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQ-ELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHH-HHhCCCCCCeE--EECCE
Confidence 578999999999999999998754 25677777765521 233 55688899997 45555
No 248
>PRK13981 NAD synthetase; Provisional
Probab=97.18 E-value=0.0057 Score=66.20 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=88.7
Q ss_pred HHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHHc-CC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEc--CChH
Q 012452 101 EIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLT-GR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF--PDAV 174 (463)
Q Consensus 101 eil~~~~~~~~-~~i~vafSGGKDS~vl-~L~~~~-~~-~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~--p~~~ 174 (463)
..|+..+++.+ .+++|++|||-||+++ .|+.+. ++ ++..+++.+....+++++.++++++.+|++.+++. +...
T Consensus 269 ~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~~~v~~~~~p~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~~~ 348 (540)
T PRK13981 269 LGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGAERVRAVMMPSRYTSEESLDDAAALAKNLGVRYDIIPIEPAFE 348 (540)
T ss_pred HHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCcCcEEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEECHHHHH
Confidence 34555566654 5699999999999877 677665 53 58888888888888999999999999999886652 2222
Q ss_pred HHHHHHHhcCCCCCCccchhhhhh--chhhhHHHHHHccCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEE
Q 012452 175 EVQALVRSKGLFSFYEDGHQECCR--VRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVK 252 (463)
Q Consensus 175 ~~~~~~~~~g~~~~~~~~~~~Cc~--~~Kv~Pl~r~l~~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k 252 (463)
.+...+... ......+...+.- ..+..-|-..-......+.|+ +++..... -.-..+ + .+...
T Consensus 349 ~~~~~~~~~--~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt------~n~sE~~~-Gy~t~~----G--D~~~~ 413 (540)
T PRK13981 349 AFEAALAPL--FAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTT------GNKSEMAV-GYATLY----G--DMAGG 413 (540)
T ss_pred HHHHHhhhh--hcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeC------CccCHHHc-CCeEec----C--CcccC
Confidence 222222110 0000111111110 111111211112334455554 13333211 101111 1 12346
Q ss_pred EEeCccCcHHHHHHHHHhCC
Q 012452 253 WNPVANVKGNDIWNFLRTMD 272 (463)
Q Consensus 253 ~~PI~dWt~~DVw~yi~~~~ 272 (463)
++||.|....+|+...+..+
T Consensus 414 ~~pi~~l~K~~v~~la~~~~ 433 (540)
T PRK13981 414 FAPIKDVYKTLVYRLCRWRN 433 (540)
T ss_pred ccccCCCCHHHHHHHHHHHH
Confidence 99999999999999888766
No 249
>PRK00768 nadE NAD synthetase; Reviewed
Probab=97.08 E-value=0.0045 Score=60.60 Aligned_cols=159 Identities=14% Similarity=0.168 Sum_probs=84.6
Q ss_pred HHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHHc----C-----CCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEE
Q 012452 101 EIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLT----G-----RPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEY 168 (463)
Q Consensus 101 eil~~~~~~~~-~~i~vafSGGKDS~vl-~L~~~~----~-----~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl-~i~~ 168 (463)
+.|+..+++.+ ..++|+.|||.||+|+ .|+.++ + +.+.++.+=.-...+++.+..+.+++.+|+ +...
T Consensus 27 ~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~da~~la~~lgi~~~~~ 106 (268)
T PRK00768 27 DFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADEDDAQDALAFIQPDRVLT 106 (268)
T ss_pred HHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHHHHHHHHHhcCCCeeEE
Confidence 44555555555 5699999999999876 555543 2 223344443344557788999999999999 5544
Q ss_pred E--cCChHHHHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHc-cCceEEEeeeccCCcccccCCCceecCCCCcCCcC
Q 012452 169 M--FPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEG 245 (463)
Q Consensus 169 ~--~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~-~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~ 245 (463)
+ .|....+...+...+.. ..+-...--.-|=..++--++. .....+.|+ ++|..... ..-..|
T Consensus 107 i~I~~~~~~~~~~l~~~~~~--~~~~a~~NiqARlRm~~Ly~~An~~~~lvlgT------~N~sE~~~-Gy~Tky----- 172 (268)
T PRK00768 107 VNIKPAVDASVAALEAAGIE--LSDFVKGNIKARERMIAQYAIAGATGGLVVGT------DHAAEAVT-GFFTKF----- 172 (268)
T ss_pred EECHHHHHHHHHHHhhcCCC--chhhHHHHHHHHHHHHHHHHHHccCCCEEEcC------CcccHHHh-Cceecc-----
Confidence 4 23333333323221110 0000000000000112222222 223555564 23333211 111111
Q ss_pred CCCCeEEEEeCccCcHHHHHHHHHhCCCC
Q 012452 246 GVGSLVKWNPVANVKGNDIWNFLRTMDVP 274 (463)
Q Consensus 246 ~~~~~~k~~PI~dWt~~DVw~yi~~~~lp 274 (463)
| .+..-++||.+++..+|+...+..++|
T Consensus 173 G-D~~~d~~pi~~L~KteV~~La~~l~vP 200 (268)
T PRK00768 173 G-DGGADILPLFGLNKRQGRALLAALGAP 200 (268)
T ss_pred C-CccccchhhcCCcHHHHHHHHHHhCCC
Confidence 1 234579999999999999999999976
No 250
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.06 E-value=0.0015 Score=61.12 Aligned_cols=77 Identities=22% Similarity=0.382 Sum_probs=54.0
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEE---------------------------------------
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKF--------------------------------------- 410 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~V--------------------------------------- 410 (463)
..+..++.|+.+.|++|+++.+.+.+ ..+ ++.+..+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~-~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NAD-GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----ccC-ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 36789999999999999999998876 111 2322222
Q ss_pred ------EcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHH
Q 012452 411 ------RADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 411 ------D~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI 459 (463)
+++.+ ..++ ++++|.++||++ |.+|.. ..| ..+.++|.++|
T Consensus 151 ~~~~~~~i~~~-~~l~-~~~gi~gtPtii-~~~G~~----~~G-~~~~~~l~~~L 197 (197)
T cd03020 151 AASCDNPVAAN-LALG-RQLGVNGTPTIV-LADGRV----VPG-APPAAQLEALL 197 (197)
T ss_pred ccccCchHHHH-HHHH-HHcCCCcccEEE-ECCCeE----ecC-CCCHHHHHhhC
Confidence 11122 4677 789999999997 777762 344 67788887764
No 251
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.05 E-value=0.004 Score=66.99 Aligned_cols=96 Identities=13% Similarity=0.148 Sum_probs=72.5
Q ss_pred eeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEE
Q 012452 353 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432 (463)
Q Consensus 353 V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi 432 (463)
-..|+++..+.+..+ .+..-+-.|+++.||+|......+++++...++ |..-.+|...+ ++++ ++|+|.++|++
T Consensus 101 ~~~l~~~~~~~~~~~--~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~--i~~~~id~~~~-~~~~-~~~~v~~VP~~ 174 (515)
T TIGR03140 101 GPKLDEGIIDRIRRL--NGPLHFETYVSLTCQNCPDVVQALNQMALLNPN--ISHTMIDGALF-QDEV-EALGIQGVPAV 174 (515)
T ss_pred CCCCCHHHHHHHHhc--CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC--ceEEEEEchhC-HHHH-HhcCCcccCEE
Confidence 344556555555431 234458889999999999999999999888765 88888999999 9999 99999999999
Q ss_pred EEEeCCCcCeeecCCCCCCHHHHHHHHH
Q 012452 433 LFFPKHSSKPIKYPSERRDVDSLMAFVD 460 (463)
Q Consensus 433 ~~f~~g~~~~~~y~gg~~~~~~L~~fI~ 460 (463)
++ +++ ..+.| ..+.+++.+.+.
T Consensus 175 ~i--~~~---~~~~g-~~~~~~~~~~l~ 196 (515)
T TIGR03140 175 FL--NGE---EFHNG-RMDLAELLEKLE 196 (515)
T ss_pred EE--CCc---EEEec-CCCHHHHHHHHh
Confidence 75 444 33455 677777766654
No 252
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.97 E-value=0.0023 Score=59.35 Aligned_cols=106 Identities=17% Similarity=0.220 Sum_probs=82.7
Q ss_pred CeeecC-hhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCC
Q 012452 352 NLVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 430 (463)
Q Consensus 352 ~V~~lt-~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~P 430 (463)
.|++++ .+.|-+.+...-..-.++|..|-+--+-|..+...+.-||.+|+- ++|.++-...- ... .+|....+|
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~--vKFckikss~~--gas-~~F~~n~lP 213 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI--VKFCKIKSSNT--GAS-DRFSLNVLP 213 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc--eeEEEeeeccc--cch-hhhcccCCc
Confidence 588885 578888776332345788899999999999999999999999987 99999987654 555 789999999
Q ss_pred EEEEEeCCCcC-----eeecCCCCCCHHHHHHHHHHh
Q 012452 431 TILFFPKHSSK-----PIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 431 Ti~~f~~g~~~-----~~~y~gg~~~~~~L~~fI~~l 462 (463)
|+++|++|..+ .....|......+|.+|+++.
T Consensus 214 ~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 214 TLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred eEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 99999999853 112224456677888888764
No 253
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.97 E-value=0.0052 Score=51.31 Aligned_cols=95 Identities=8% Similarity=0.133 Sum_probs=63.7
Q ss_pred ChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC---cHHHHHHcCCCC-CCCEE
Q 012452 357 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---QKEYAKQKLQLG-SFPTI 432 (463)
Q Consensus 357 t~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~---~~~l~~~~~~I~-~~PTi 432 (463)
+.++++++++ .+.+++++|+=.++.|+-.......|++......+ .+.++.+|+-+. ...++ ++|+|. .-|-+
T Consensus 6 t~eql~~i~~-~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~-~~~~y~l~v~~~R~vSn~IA-e~~~V~HeSPQ~ 82 (105)
T PF11009_consen 6 TEEQLEEILE-ESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD-EIPVYYLDVIEYRPVSNAIA-EDFGVKHESPQV 82 (105)
T ss_dssp SHHHHHHHHH-H---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHHHHHHHH-HHHT----SSEE
T ss_pred CHHHHHHHHH-hcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc-cceEEEEEEEeCchhHHHHH-HHhCCCcCCCcE
Confidence 4578888887 34588999988999999999999999999988877 599999999776 13567 889996 67999
Q ss_pred EEEeCCCcCeeecCCCCCCHHHH
Q 012452 433 LFFPKHSSKPIKYPSERRDVDSL 455 (463)
Q Consensus 433 ~~f~~g~~~~~~y~gg~~~~~~L 455 (463)
+++++|+...-.-. ...+.++|
T Consensus 83 ili~~g~~v~~aSH-~~It~~~l 104 (105)
T PF11009_consen 83 ILIKNGKVVWHASH-WDITAEAL 104 (105)
T ss_dssp EEEETTEEEEEEEG-GG-SHHHH
T ss_pred EEEECCEEEEECcc-ccCCHHhc
Confidence 99999984211112 24566555
No 254
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.93 E-value=0.0031 Score=47.72 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=39.8
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHH---HHcCCCCCCCEEEEEeCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA---KQKLQLGSFPTILFFPKHS 439 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~---~~~~~I~~~PTi~~f~~g~ 439 (463)
++.|+++||++|+.....|.+. ++.+..+|++.+ .+.. .+..+..++|+++ .+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~-~~~~~~l~~~~~~~~~P~~~--~~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------GIEFEEIDILED-GELREELKELSGWPTVPQIF--INGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCcEEEEECCCC-HHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 5679999999999999888865 367788888877 4332 0344667888774 3554
No 255
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.90 E-value=0.0086 Score=47.73 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=50.3
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH--HcCCCCCCCEEEEEeCCCcCeeecCCCCCCH
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK--QKLQLGSFPTILFFPKHSSKPIKYPSERRDV 452 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~--~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~ 452 (463)
++.|..+||++|+..+..|++ .++.|-.+|++.+ ++... +..+...+|++++ ++. ...| .+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~gI~~~~idi~~~-~~~~~~~~~~g~~~vPvv~i--~~~----~~~G--f~~ 66 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RGFDFEMINVDRV-PEAAETLRAQGFRQLPVVIA--GDL----SWSG--FRP 66 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CCCceEEEECCCC-HHHHHHHHHcCCCCcCEEEE--CCE----EEec--CCH
Confidence 567889999999998888854 2588999999987 55330 2346779999964 332 2223 678
Q ss_pred HHHHHHHHH
Q 012452 453 DSLMAFVDA 461 (463)
Q Consensus 453 ~~L~~fI~~ 461 (463)
+.|.+.+..
T Consensus 67 ~~l~~~~~~ 75 (81)
T PRK10329 67 DMINRLHPA 75 (81)
T ss_pred HHHHHHHHh
Confidence 888887754
No 256
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.86 E-value=0.0098 Score=48.79 Aligned_cols=96 Identities=15% Similarity=0.256 Sum_probs=73.0
Q ss_pred hhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC-cHHHHHHcCCCC----CCC-E
Q 012452 358 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD-QKEYAKQKLQLG----SFP-T 431 (463)
Q Consensus 358 ~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~-~~~l~~~~~~I~----~~P-T 431 (463)
-.+|..++. ....|||.|..+- ..-......|.++|+..++ .-.++.|||.+. ...+| +++.|. --| +
T Consensus 9 ~KdfKKLLR---Tr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG-~gT~~~vdCgd~e~kKLC-KKlKv~~~~kp~~~~ 82 (112)
T cd03067 9 HKDFKKLLR---TRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKG-QGTIAWIDCGDSESRKLC-KKLKVDPSSKPKPVE 82 (112)
T ss_pred hHHHHHHHh---hcCcEEEEEecch-hhHHHHHHHHHHHHHHhcC-ceeEEEEecCChHHHHHH-HHHccCCCCCCCcch
Confidence 478888886 6677888777653 3344455688999999998 678999999872 28899 899998 455 5
Q ss_pred EEEEeCCCcCeeecCCCCCCHHHHHHHHHH
Q 012452 432 ILFFPKHSSKPIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 432 i~~f~~g~~~~~~y~gg~~~~~~L~~fI~~ 461 (463)
+.-|++|.. ...|.- ..+..+|+.|++.
T Consensus 83 LkHYKdG~f-HkdYdR-~~t~kSmv~FlrD 110 (112)
T cd03067 83 LKHYKDGDF-HTEYNR-QLTFKSMVAFLRD 110 (112)
T ss_pred hhcccCCCc-cccccc-hhhHHHHHHHhhC
Confidence 566788875 567776 6889999999863
No 257
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=96.86 E-value=0.0022 Score=65.79 Aligned_cols=154 Identities=16% Similarity=0.253 Sum_probs=77.4
Q ss_pred EEEechhHHH-HHHHHHHHcC-CCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHH----HHHhcCCCC
Q 012452 115 AIAFSGAEDV-ALIEYAHLTG-RPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQA----LVRSKGLFS 187 (463)
Q Consensus 115 ~vafSGGKDS-~vl~L~~~~~-~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl-~i~~~~p~~~~~~~----~~~~~g~~~ 187 (463)
+++||||=|+ +++.++++.. .++..+++|+|-. .+-.+.+++-+.++|. +++++--......+ .+..+ .
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~-~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~an---A 76 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQP-DEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKAN---A 76 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST--S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT----
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCc-HHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHHH---H
Confidence 5899999995 4556666655 7899999999984 3667778888889997 77776332221111 12212 1
Q ss_pred CCccchhhhhh------chhhhHHHHHHccCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCccC--
Q 012452 188 FYEDGHQECCR------VRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV-- 259 (463)
Q Consensus 188 ~~~~~~~~Cc~------~~Kv~Pl~r~l~~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dW-- 259 (463)
+|......++. ..++-.+.+.. +.+++.-|-..-..-+-|....+...+| .+-.+.|+-+|
T Consensus 77 ~Yeg~YpL~tsl~RplIa~~~v~~A~~~-ga~~vaHG~TgkGNDqvRFe~~~~al~P----------~l~viaP~Rd~~~ 145 (388)
T PF00764_consen 77 LYEGRYPLSTSLARPLIAKKLVEVAREE-GADAVAHGCTGKGNDQVRFELSIRALAP----------ELKVIAPWRDWEF 145 (388)
T ss_dssp -BTTTB--CCCCHHHHHHHHHHHHHHHH-T-SEEE----TTSSHHHHHHHHHHHHST----------TSEEE-GGGHHHH
T ss_pred HhCCCccccccchHHHHHHHHHHHHHHc-CCeEEeccCCcCCCchhHHHHHHHHhCc----------CCcEecccchhhh
Confidence 23222222222 22222222211 4456665532211112455444444454 45678999887
Q ss_pred cHHHHHHHHHhCCCCccchhccCC
Q 012452 260 KGNDIWNFLRTMDVPINSLHSQGY 283 (463)
Q Consensus 260 t~~DVw~yi~~~~lp~npLy~~Gy 283 (463)
+.+|-.+|+++||||+..--..-|
T Consensus 146 ~R~~~i~ya~~~gIpv~~~~~~~y 169 (388)
T PF00764_consen 146 SREEEIEYAKKHGIPVPVTKKKPY 169 (388)
T ss_dssp HHHHHHHHHHHTT----SS---SS
T ss_pred hHHHHHHHHHHcCCCCCCCCCCCC
Confidence 678999999999999865433333
No 258
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.81 E-value=0.003 Score=48.88 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=46.1
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHc---CCCCCCCEEEEEeCCCcCeeecCCCCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQK---LQLGSFPTILFFPKHSSKPIKYPSERRD 451 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~---~~I~~~PTi~~f~~g~~~~~~y~gg~~~ 451 (463)
+..|..++|++|+..+..|++. ++.|-.+|++.+ ++.. .+ .+..++|++++ +|.. . .+| .+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~-------~i~~~~~di~~~-~~~~-~~~~~~g~~~vP~v~~--~g~~---~-~~G-~~ 64 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH-------GIAFEEINIDEQ-PEAI-DYVKAQGFRQVPVIVA--DGDL---S-WSG-FR 64 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC-------CCceEEEECCCC-HHHH-HHHHHcCCcccCEEEE--CCCc---E-Eec-cC
Confidence 3568889999999999888752 588888999887 5544 33 37789999854 3431 1 222 56
Q ss_pred HHHHHH
Q 012452 452 VDSLMA 457 (463)
Q Consensus 452 ~~~L~~ 457 (463)
.+.|.+
T Consensus 65 ~~~~~~ 70 (72)
T TIGR02194 65 PDKLKA 70 (72)
T ss_pred HHHHHh
Confidence 666654
No 259
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.80 E-value=0.0031 Score=50.25 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=57.2
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCc--CeeecCCCCCCH
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSS--KPIKYPSERRDV 452 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~--~~~~y~gg~~~~ 452 (463)
|++|..+.|+-|......+.++.... .+.+-.||++++ +++. .+|+. .+|.+.+-..++. ....+ +..+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~---~~~l~~vDI~~d-~~l~-~~Y~~-~IPVl~~~~~~~~~~~~~~~--~~~d~ 73 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF---PFELEEVDIDED-PELF-EKYGY-RIPVLHIDGIRQFKEQEELK--WRFDE 73 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS---TCEEEEEETTTT-HHHH-HHSCT-STSEEEETT-GGGCTSEEEE--SSB-H
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc---CceEEEEECCCC-HHHH-HHhcC-CCCEEEEcCcccccccceeC--CCCCH
Confidence 67899999999999998888765443 589999999988 8888 89996 6999764332111 12222 26899
Q ss_pred HHHHHHHH
Q 012452 453 DSLMAFVD 460 (463)
Q Consensus 453 ~~L~~fI~ 460 (463)
+.|.+||+
T Consensus 74 ~~L~~~L~ 81 (81)
T PF05768_consen 74 EQLRAWLE 81 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999985
No 260
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.77 E-value=0.011 Score=56.27 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=48.2
Q ss_pred CCCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEE
Q 012452 350 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKF 410 (463)
Q Consensus 350 ~~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~V 410 (463)
+..|+++++++...+.+-.+.++|.||+|.+=.||+-..-...|++++++|.+ .+.|+.|
T Consensus 81 ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d-~adFl~V 140 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD-VADFLIV 140 (237)
T ss_pred CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh-hhheehh
Confidence 34788888877555555455899999999999999999999999999999987 3444444
No 261
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.74 E-value=0.0048 Score=48.78 Aligned_cols=71 Identities=18% Similarity=0.328 Sum_probs=48.6
Q ss_pred CCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc--HHHHHHcCCCCCCCEEEEEeCCCcCeeecCCC
Q 012452 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE 448 (463)
Q Consensus 371 ~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~--~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg 448 (463)
++.-++.|..+||++|+..+..|++. ++.+-.+|++.+. .++. ...+..++|.+++ +|+ . .||
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-------gi~y~~idi~~~~~~~~~~-~~~g~~~vP~i~i--~g~--~---igG 70 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-------GYDFEEIPLGNDARGRSLR-AVTGATTVPQVFI--GGK--L---IGG 70 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-------CCCcEEEECCCChHHHHHH-HHHCCCCcCeEEE--CCE--E---EcC
Confidence 44557789999999999999888642 4777778887651 2343 4567889999953 554 1 232
Q ss_pred CCCHHHHHHHH
Q 012452 449 RRDVDSLMAFV 459 (463)
Q Consensus 449 ~~~~~~L~~fI 459 (463)
.++|.+||
T Consensus 71 ---~~~l~~~l 78 (79)
T TIGR02190 71 ---SDELEAYL 78 (79)
T ss_pred ---HHHHHHHh
Confidence 36677665
No 262
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=96.72 E-value=0.0079 Score=57.33 Aligned_cols=118 Identities=15% Similarity=0.192 Sum_probs=70.6
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCC-eEEEEEeCCC---C-c-HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRP-FRVFSLDTGR---L-N-PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 185 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~-i~vi~~DTg~---~-f-peT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~ 185 (463)
++++.|||||||++. +.+.+. .+ +.++++-+.. . | --..++++..++.+|+++..+....
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~------------ 68 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE-HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEG------------ 68 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh-CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCC------------
Confidence 367899999999765 555555 44 3333332221 1 1 1234788899999999986542111
Q ss_pred CCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCccCcHHH
Q 012452 186 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND 263 (463)
Q Consensus 186 ~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~D 263 (463)
.....++.+.++++ +.+++++|--..+. +|.....+.-. -|+.-+.||..-..++
T Consensus 69 -----------~~e~~~e~l~~~l~~~gv~~vv~GdI~s~~--qr~~~e~v~~~----------lgl~~~~PLW~~~~~~ 125 (223)
T TIGR00290 69 -----------TEEDEVEELKGILHTLDVEAVVFGAIYSEY--QKTRIERVCRE----------LGLKSFAPLWHRDPEK 125 (223)
T ss_pred -----------CccHHHHHHHHHHHHcCCCEEEECCcccHH--HHHHHHHHHHh----------cCCEEeccccCCCHHH
Confidence 11224556666665 45689999887775 34433222111 2577899998887777
Q ss_pred HHH
Q 012452 264 IWN 266 (463)
Q Consensus 264 Vw~ 266 (463)
+..
T Consensus 126 ll~ 128 (223)
T TIGR00290 126 LME 128 (223)
T ss_pred HHH
Confidence 554
No 263
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.041 Score=54.13 Aligned_cols=161 Identities=11% Similarity=0.056 Sum_probs=93.7
Q ss_pred CcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeC-------CCC--cHHHHHHHHHHHHHhCCcEEEEcCChHHHHH---
Q 012452 112 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDT-------GRL--NPETYRFFDEVEKHFGIRIEYMFPDAVEVQA--- 178 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DT-------g~~--fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~--- 178 (463)
.+++|+.|||-||.|. +|++..+.++.-+|+-. |.+ ...-.+.+++++++++++++.+.=.. +.|.
T Consensus 6 ~~VvvamSgGVDSsVaa~Ll~~~g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~k-EYW~~Vf 84 (377)
T KOG2805|consen 6 DRVVVAMSGGVDSSVAARLLAARGYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNFVK-EYWNDVF 84 (377)
T ss_pred ceEEEEecCCchHHHHHHHHHhcCCCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEeeHH-HHHHHHH
Confidence 4699999999997665 88888888887776532 112 33556789999999999997663222 2222
Q ss_pred --HHHhcCCCCCCccchhhhhhchhhhHHHHHH-c--cCceEEEeeeccCCcccccC-CCceecCCCCcCCcCC------
Q 012452 179 --LVRSKGLFSFYEDGHQECCRVRKVRPLRRAL-K--GLRAWITGQRKDQSPGTRSE-IPVVQVDPVFEGLEGG------ 246 (463)
Q Consensus 179 --~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l-~--~~~~~itG~Rr~ES~~~Ra~-~~~~~~d~~~~~~~~~------ 246 (463)
+++++.....|..+ --|....|...+.+.. . +++.+.||.=+--+.+.-.+ ...+.. +....++..
T Consensus 85 s~~L~~Y~~G~TPNPD-I~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~~~~~~l~~-~~d~~KDQt~FL~~i 162 (377)
T KOG2805|consen 85 SPFLEEYENGRTPNPD-ILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDEDNAESHLLI-SKDMVKDQTYFLSTI 162 (377)
T ss_pred HHHHHHHhcCCCCCCC-ccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCcccCcceeEee-cccccCCceeEeecc
Confidence 23333222222222 3588888888544444 3 45678888643322100000 000000 001011100
Q ss_pred -CCC-eEEEEeCccCcHHHHHHHHHhCCCCc
Q 012452 247 -VGS-LVKWNPVANVKGNDIWNFLRTMDVPI 275 (463)
Q Consensus 247 -~~~-~~k~~PI~dWt~~DVw~yi~~~~lp~ 275 (463)
... .-...||-+|+.++|....++.|+|.
T Consensus 163 n~~~L~r~lfPlg~~~K~eVk~lA~~~gf~~ 193 (377)
T KOG2805|consen 163 NQTQLKRLLFPLGCLTKSEVKKLAKQAGFPN 193 (377)
T ss_pred cHHHHHhhhccCcccCHHHHHHHHHhcCCcc
Confidence 000 01257999999999999999999984
No 264
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=96.68 E-value=0.014 Score=55.90 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=69.3
Q ss_pred HHHHHHHHHH---cCCcEEEEechhHHHHHH-HHHHH-cCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChH
Q 012452 100 LEIMDRALEK---FGNDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAV 174 (463)
Q Consensus 100 ~eil~~~~~~---~~~~i~vafSGGKDS~vl-~L~~~-~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~ 174 (463)
.+.++.+++. -..+|.+.+|||-||.++ .++.+ .+.++..++++.+.....=..+++++++++|++++.+.....
T Consensus 3 r~~l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t~~~~~~~~~e~~~a~~va~~~~~~~~~~~~~~~ 82 (255)
T PF00733_consen 3 RELLEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQGGPPIKTFTIGFEDDDYDEREYARKVARHLGLEHHEIELDPE 82 (255)
T ss_dssp HHHHHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTCCSEEEEEEEECSSCC--HHHHHHHHHHHHT-EEEEEEE-HH
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhhCCceeEEEEEcCCCcchhHHHHHHHhcccccccceeeechh
Confidence 3455556655 235799999999998766 67777 677899999999887765567899999999999877665554
Q ss_pred HHHH----HHHhcCCCCCCccchhhhhhchhhhHHHHHH--ccCceEEEeeeccCCc
Q 012452 175 EVQA----LVRSKGLFSFYEDGHQECCRVRKVRPLRRAL--KGLRAWITGQRKDQSP 225 (463)
Q Consensus 175 ~~~~----~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l--~~~~~~itG~Rr~ES~ 225 (463)
.+.. .+...+.|. .. ..+...... -+.+.. .+.+++++|.-.||-.
T Consensus 83 ~~~~~~~~~~~~~~~p~---~~-~~~~~~~~~-~~~~~a~~~~~~~~ltG~GgDelf 134 (255)
T PF00733_consen 83 DLLDNLEDIIWRLDGPS---PL-DDPNSLPLY-LLARLARENGIRVLLTGQGGDELF 134 (255)
T ss_dssp HHHHHHHHHHHHHT------HH-HHHHHHHHH-HHHHHHCHTTBSEEE--TTHHHHH
T ss_pred hHHHhHHHHHHHHhCCc---cc-ccccccHHH-HHHHhhcccceeEEEecccccccc
Confidence 3322 222222211 10 011111111 122233 3667999999888754
No 265
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.67 E-value=0.014 Score=63.51 Aligned_cols=87 Identities=14% Similarity=0.167 Sum_probs=68.4
Q ss_pred CCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEe-CCCcCeeecCCCC
Q 012452 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP-KHSSKPIKYPSER 449 (463)
Q Consensus 371 ~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~-~g~~~~~~y~gg~ 449 (463)
+...|+.|+.+.|..|..+...++++++ +.+ ++.+...|...+ .+++ ++|+|...|++.++. +|....+.|.| -
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~-~i~~~~~~~~~~-~~~~-~~~~v~~~P~~~i~~~~~~~~~i~f~g-~ 440 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFAS-LSE-KLNSEAVNRGEE-PESE-TLPKITKLPTVALLDDDGNYTGLKFHG-V 440 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHHh-cCC-cEEEEEeccccc-hhhH-hhcCCCcCCEEEEEeCCCcccceEEEe-c
Confidence 3446778888899999999999999984 445 688888898888 8889 899999999999995 44433577776 4
Q ss_pred CCHHHHHHHHHHh
Q 012452 450 RDVDSLMAFVDAL 462 (463)
Q Consensus 450 ~~~~~L~~fI~~l 462 (463)
..-.++..||..|
T Consensus 441 P~G~Ef~s~i~~i 453 (555)
T TIGR03143 441 PSGHELNSFILAL 453 (555)
T ss_pred CccHhHHHHHHHH
Confidence 5567787777654
No 266
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.67 E-value=0.0038 Score=49.12 Aligned_cols=55 Identities=22% Similarity=0.480 Sum_probs=39.2
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH---HcCCCCCCCEEEEEeCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILFFPKHS 439 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~---~~~~I~~~PTi~~f~~g~ 439 (463)
++.|+.+||++|......|++. ++.+-.+|++.+ ++..+ +..+..++|+++ -+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~--i~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-------GVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIF--IGDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-------CCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEE--ECCE
Confidence 4678899999999999888753 467777788776 44330 334678899983 4554
No 267
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.62 E-value=0.011 Score=57.68 Aligned_cols=85 Identities=16% Similarity=0.280 Sum_probs=57.2
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEc----------------CCC------------------
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA----------------DGD------------------ 415 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~----------------d~~------------------ 415 (463)
..+.+|+.|.-+.||+|+++.+.+.++.+. + ++.+..+.. .++
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~ 192 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK 192 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence 456789999999999999999888765443 1 244433321 000
Q ss_pred ---------------cHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHH
Q 012452 416 ---------------QKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 460 (463)
Q Consensus 416 ---------------~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~ 460 (463)
+..+. ++++|+++|++++-+..+ .+....| ..+.++|.+.+.
T Consensus 193 ~~~~~~~~~~~~i~~n~~l~-~~lGv~GTPaiv~~d~~G-~~~~v~G-~~~~~~L~~~l~ 249 (251)
T PRK11657 193 PPASIPAAVRKQLADNQKLM-DDLGANATPAIYYMDKDG-TLQQVVG-LPDPAQLAEIMG 249 (251)
T ss_pred ccccCCHHHHHHHHHHHHHH-HHcCCCCCCEEEEECCCC-CEEEecC-CCCHHHHHHHhC
Confidence 02356 678999999998775322 1444555 688999988875
No 268
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=96.59 E-value=0.0092 Score=57.76 Aligned_cols=175 Identities=17% Similarity=0.257 Sum_probs=98.2
Q ss_pred HHHHHHHHcC-CcEEEEechhHHHHHH-HHHHH-cCCCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHHH
Q 012452 102 IMDRALEKFG-NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEVQ 177 (463)
Q Consensus 102 il~~~~~~~~-~~i~vafSGGKDS~vl-~L~~~-~~~~i~vi~~DTg~~-fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~ 177 (463)
.++.+-++.| .++.++.|||-||++. -|+++ .+.....+|+|+|.. --|..+.++.+.+++|+++..+..... |-
T Consensus 11 ~i~~ir~~vg~~kvi~alSGGVDSsv~a~L~~~AiGd~l~cvfVD~GLlR~~E~e~V~~~f~~~~~~nl~~VdA~~~-Fl 89 (315)
T COG0519 11 AIEEIREQVGDGKVILALSGGVDSSVAAVLAHRAIGDQLTCVFVDHGLLRKGEAEQVVEMFREHLGLNLIVVDAKDR-FL 89 (315)
T ss_pred HHHHHHHHhCCceEEEEecCCCcHHHHHHHHHHHhhcceEEEEecCCcccCCcHHHHHHHHHhhcCCceEEEchHHH-HH
Confidence 3444445555 5689999999998766 56666 577899999999965 446777778888889999988843322 22
Q ss_pred HHHHhcCCCCCCccchhhhhhchhhhHHHHHHccC--ceEEEeeecc---CCcccccCCCceecCCCCcCCcCCCC---C
Q 012452 178 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKD---QSPGTRSEIPVVQVDPVFEGLEGGVG---S 249 (463)
Q Consensus 178 ~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~--~~~itG~Rr~---ES~~~Ra~~~~~~~d~~~~~~~~~~~---~ 249 (463)
. .-.|... |+. .|.--...-++-+.+..+.+ +-++-|+=.- ||. ....-.+ ...++ .+|-+ .
T Consensus 90 ~--~L~GvtD-PE~-KRKiIG~~FI~VFe~ea~k~~~~~LaQGTiYpDvIES~-~g~~~~I---KSHHN--VGGLP~~m~ 159 (315)
T COG0519 90 S--ALKGVTD-PEE-KRKIIGREFIEVFEEEAKKLGAEFLAQGTIYPDVIESG-TGKAGTI---KSHHN--VGGLPEDMK 159 (315)
T ss_pred H--HhcCCCC-HHH-HHHHHHHHHHHHHHHHHHhCCcceEEecccccceeeec-CCCCCcc---ccccc--cCCCccccc
Confidence 2 1223211 111 11111111122222222222 2233333221 221 1111111 11110 01111 2
Q ss_pred eEEEEeCccCcHHHHHHHHHhCCCCccchhccCCcccC
Q 012452 250 LVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIG 287 (463)
Q Consensus 250 ~~k~~PI~dWt~~DVw~yi~~~~lp~npLy~~Gy~siG 287 (463)
+--+-||-+.=.++|-..=++.|+|..-+|.+-|+--|
T Consensus 160 lkLvEPLr~LfKDEVR~lg~~LGlp~~iv~RhPFPGPG 197 (315)
T COG0519 160 LKLVEPLRELFKDEVRELGRELGLPEEIVYRHPFPGPG 197 (315)
T ss_pred eeeeHHHHHHhHHHHHHHHHHhCCCHHHhccCCCCCCC
Confidence 33468999999999999999999999999888776544
No 269
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.56 E-value=0.0072 Score=46.77 Aligned_cols=55 Identities=18% Similarity=0.353 Sum_probs=39.4
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH---HcCCCC-CCCEEEEEeCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLG-SFPTILFFPKHS 439 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~---~~~~I~-~~PTi~~f~~g~ 439 (463)
++.|..+||++|......|++. ++.+-.+|++.+ ++..+ +..+.. ++|+++ -+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-------~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~--i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-------GVDYEEIDVDGD-PALREEMINRSGGRRTVPQIF--IGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-------CCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEE--ECCE
Confidence 5678899999999988888752 478888888876 44431 234555 899874 4554
No 270
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.54 E-value=0.0057 Score=50.75 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=36.8
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc--HH----HHHHcCCCCCCCEEEEEeCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KE----YAKQKLQLGSFPTILFFPKHS 439 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~--~~----l~~~~~~I~~~PTi~~f~~g~ 439 (463)
++.|..+|||+|++.+..|.++ ++.+-.+|+|.+. .+ +. +..+..++|.+ |-+|+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-------~i~~~~vdid~~~~~~~~~~~l~-~~tg~~tvP~V--fi~g~ 70 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-------GVNPAVHEIDKEPAGKDIENALS-RLGCSPAVPAV--FVGGK 70 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCCEEEEcCCCccHHHHHHHHH-HhcCCCCcCeE--EECCE
Confidence 6679999999999998877654 3555566666541 22 22 33467899997 45554
No 271
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.49 E-value=0.0092 Score=46.23 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=38.5
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHH----HHHHcCCCCCCCEEE
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQLGSFPTIL 433 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~----l~~~~~~I~~~PTi~ 433 (463)
++.|+.+||++|+.....|++. ++.+-.+|++.+ ++ +. +..+-..+|+++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-------gi~~~~~di~~~-~~~~~el~-~~~g~~~vP~v~ 56 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-------GLPYVEINIDIF-PERKAELE-ERTGSSVVPQIF 56 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-------CCceEEEECCCC-HHHHHHHH-HHhCCCCcCEEE
Confidence 5678999999999998888762 588888899887 43 44 445667899984
No 272
>PHA03050 glutaredoxin; Provisional
Probab=96.45 E-value=0.0073 Score=50.95 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=38.1
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCC--Cc----HHHHHHcCCCCCCCEEEEEeCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG--DQ----KEYAKQKLQLGSFPTILFFPKHS 439 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~--~~----~~l~~~~~~I~~~PTi~~f~~g~ 439 (463)
++.|..+|||+|+..+..|+++.-... .|-.+|+++ .+ .++. +..+..++|+++ -+|+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~----~~~~i~i~~~~~~~~~~~~l~-~~tG~~tVP~If--I~g~ 78 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG----AYEIVDIKEFKPENELRDYFE-QITGGRTVPRIF--FGKT 78 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC----CcEEEECCCCCCCHHHHHHHH-HHcCCCCcCEEE--ECCE
Confidence 667999999999999988877632221 345556554 21 2344 455778999994 3454
No 273
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.40 E-value=0.027 Score=51.27 Aligned_cols=68 Identities=26% Similarity=0.453 Sum_probs=56.9
Q ss_pred HhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 388 AMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 388 ~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
.....|.++|+.+.+ .+.|+.++ + .+++ +++++.. |++++|+++......|.|...+.++|.+||..-
T Consensus 7 ~~~~~f~~~A~~~~~-~~~F~~~~---~-~~~~-~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKG-DYQFGVTF---N-EELA-KKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHHTT-TSEEEEEE-----HHHH-HHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcC-CcEEEEEc---H-HHHH-HHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence 345688999999997 69999887 4 7889 8999998 999999986666899998447999999999863
No 274
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.30 E-value=0.007 Score=50.79 Aligned_cols=93 Identities=11% Similarity=0.170 Sum_probs=63.7
Q ss_pred CCCeeecChhhHHHHHhhcCCCCcEEEEEecCCC---hhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCC
Q 012452 350 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWC---QFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQL 426 (463)
Q Consensus 350 ~~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC---~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I 426 (463)
......++.+++++++. .....++ |++..| +.+....=++-+|.+.+.+ .+..+.++-+.+ ..+. .+|++
T Consensus 8 ~~g~~~vd~~~ld~~l~---~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~-~~~~avv~~~~e-~~L~-~r~gv 80 (107)
T PF07449_consen 8 RHGWPRVDADTLDAFLA---APGDAVL-FFAGDPARFPETADVAVILPELVKAFPG-RFRGAVVARAAE-RALA-ARFGV 80 (107)
T ss_dssp T-TEEEE-CCCHHHHHH---CCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTT-SEEEEEEEHHHH-HHHH-HHHT-
T ss_pred hcCCeeechhhHHHHHh---CCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhC-ccceEEECchhH-HHHH-HHhCC
Confidence 34677888999999987 5555555 555444 4444444467788888877 677777885555 8899 99999
Q ss_pred CCCCEEEEEeCCCcCeeecCCCCCC
Q 012452 427 GSFPTILFFPKHSSKPIKYPSERRD 451 (463)
Q Consensus 427 ~~~PTi~~f~~g~~~~~~y~gg~~~ 451 (463)
..+|+++||.+|+ +.....|.++
T Consensus 81 ~~~PaLvf~R~g~--~lG~i~gi~d 103 (107)
T PF07449_consen 81 RRWPALVFFRDGR--YLGAIEGIRD 103 (107)
T ss_dssp TSSSEEEEEETTE--EEEEEESSST
T ss_pred ccCCeEEEEECCE--EEEEecCeec
Confidence 9999999999998 5554443333
No 275
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.30 E-value=0.012 Score=46.93 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=44.5
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEc--CCC-----------------------------cHHHHHHc
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA--DGD-----------------------------QKEYAKQK 423 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~--d~~-----------------------------~~~l~~~~ 423 (463)
|+.|+.+.|++|..+.+.+.++.....+ ++.+....+ ... +.... .+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALA-RA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-HH
Confidence 4689999999999999999999865555 566665543 221 02345 67
Q ss_pred CCCCCCCEEEEEe
Q 012452 424 LQLGSFPTILFFP 436 (463)
Q Consensus 424 ~~I~~~PTi~~f~ 436 (463)
+++.++||+++..
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 8999999998765
No 276
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.18 E-value=0.022 Score=47.01 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=39.7
Q ss_pred CCcEEEEEe----cCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH---HcCCCCCCCEEEEEeCCC
Q 012452 371 QEPWLVVLY----APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILFFPKHS 439 (463)
Q Consensus 371 ~k~vlV~Fy----A~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~---~~~~I~~~PTi~~f~~g~ 439 (463)
..+|+|+-. +||||+|+.....|.+. ++.+..+|++.+ +++.. +..+-..+|.++ -+|+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vf--i~g~ 76 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC-------GVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLY--VKGE 76 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc-------CCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEE--ECCE
Confidence 455555443 39999999988888764 477888898776 44330 344667899884 4454
No 277
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=96.15 E-value=0.034 Score=56.36 Aligned_cols=144 Identities=20% Similarity=0.320 Sum_probs=84.6
Q ss_pred CcEEEEechhHH-HHHHHHHHH-cCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCc-EEEEcCChHHHHHH----HHhcC
Q 012452 112 NDIAIAFSGAED-VALIEYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDAVEVQAL----VRSKG 184 (463)
Q Consensus 112 ~~i~vafSGGKD-S~vl~L~~~-~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~-i~~~~p~~~~~~~~----~~~~g 184 (463)
.+|++|||||=| |+++.++.. .+-.+..+++|.|-. .+=++.+++-+..+|.. ..++--......++ +..++
T Consensus 5 kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~-eed~~~i~eKA~~~Ga~~~~viD~reeF~~~yi~~~i~ana 83 (403)
T COG0137 5 KKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQP-EEDLDAIREKALELGAEEAYVIDAREEFVEDYIFPAIKANA 83 (403)
T ss_pred cEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCC-hHHhHHHHHHHHHhCCceEEEeecHHHHHHHHHHHHHHhhc
Confidence 469999999999 666755555 457888899999977 78889999999999985 44442111111111 11121
Q ss_pred CCCCCccchhhhhhchhhhHHHHHH---------c--cCceEEEe---eeccCCcccccCCCceecCCCCcCCcCCCCCe
Q 012452 185 LFSFYEDGHQECCRVRKVRPLRRAL---------K--GLRAWITG---QRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSL 250 (463)
Q Consensus 185 ~~~~~~~~~~~Cc~~~Kv~Pl~r~l---------~--~~~~~itG---~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~ 250 (463)
.|+.. ..=.-+|.|.| + |.++|.-| -=-|| -|..+.....+| ++
T Consensus 84 ---~Yeg~------YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQ---vRFe~~~~al~p----------~l 141 (403)
T COG0137 84 ---LYEGV------YPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQ---VRFELAILALNP----------DL 141 (403)
T ss_pred ---eeecc------ccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCce---eeeeeehhhhCC----------Cc
Confidence 12211 00111222221 1 34466543 32333 244443333343 45
Q ss_pred EEEEeCcc--CcHHHHHHHHHhCCCCccch
Q 012452 251 VKWNPVAN--VKGNDIWNFLRTMDVPINSL 278 (463)
Q Consensus 251 ~k~~PI~d--Wt~~DVw~yi~~~~lp~npL 278 (463)
-.+.|.-+ |+.++--+|.+++|||+.-=
T Consensus 142 kiiAP~Rew~~~R~~~i~Ya~~~gipv~~~ 171 (403)
T COG0137 142 KIIAPWREWNLTREEEIEYAEEHGIPVKAT 171 (403)
T ss_pred EEEeehhhhccChHHHHHHHHHcCCCcccc
Confidence 56778755 58889999999999998644
No 278
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=96.10 E-value=0.066 Score=52.43 Aligned_cols=165 Identities=19% Similarity=0.244 Sum_probs=90.3
Q ss_pred HHHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHHcCC------CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEE--E
Q 012452 100 LEIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLTGR------PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEY--M 169 (463)
Q Consensus 100 ~eil~~~~~~~~-~~i~vafSGGKDS~vl-~L~~~~~~------~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~--~ 169 (463)
.+.|+.-+.+.+ +.++++.|||-||++. .|+.++-. .+..+.+..+..-+.+++-+..+.+.+|+.... +
T Consensus 13 ~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~~~~da~~~~~~lg~~~~~i~I 92 (268)
T COG0171 13 VDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEEDAQDLAEALGIDYKEINI 92 (268)
T ss_pred HHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCccccCHHHHHHHHHHhCCceEEEec
Confidence 344555555544 5699999999999866 67766432 255666665543678888899999999998543 3
Q ss_pred cCChHHHHHH-HHhcCCCCCCc-cchhhhhhchhhhHHHHHHccCceEEEeeeccCCcccccCCCceecCCCCcCCcCCC
Q 012452 170 FPDAVEVQAL-VRSKGLFSFYE-DGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGV 247 (463)
Q Consensus 170 ~p~~~~~~~~-~~~~g~~~~~~-~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~ 247 (463)
.|....+... .....-..... ...+-.-+.|.+- +-.+-..+...++|+ ++++.... -+-.+| |
T Consensus 93 ~~~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~-lY~~An~~~~lVlGT------gn~sE~~~-Gy~Tky-----G- 158 (268)
T COG0171 93 KPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVI-LYAIANKLGGLVLGT------GNKSELAL-GYFTKY-----G- 158 (268)
T ss_pred HHHHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHH-HHHHHhhcCCEEEcC------CcHHHHhc-Cceecc-----c-
Confidence 3433332111 11110000000 0001111222211 111222345666675 24544321 111122 1
Q ss_pred CCeEEEEeCccCcHHHHHHHHHhCCCCccch
Q 012452 248 GSLVKWNPVANVKGNDIWNFLRTMDVPINSL 278 (463)
Q Consensus 248 ~~~~k~~PI~dWt~~DVw~yi~~~~lp~npL 278 (463)
.+-.-++||.+....+|+..++..++|-+-+
T Consensus 159 Dg~~d~~Pi~~L~KtqV~~La~~l~ipe~I~ 189 (268)
T COG0171 159 DGAVDINPIADLYKTQVYALARHLGIPEEIL 189 (268)
T ss_pred CcccChhhhcCCcHHHHHHHHHHcCCCHHHh
Confidence 2345699999999999999999777765443
No 279
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=96.10 E-value=0.021 Score=45.49 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=43.0
Q ss_pred EEEEechhHHHHHH-HHHHHc---CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012452 114 IAIAFSGAEDVALI-EYAHLT---GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 172 (463)
Q Consensus 114 i~vafSGGKDS~vl-~L~~~~---~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 172 (463)
|++++|||.||.++ +++.+. ...+.++++| ..++.+.+.++++|.+..+.-..
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~Iv~G~~ 57 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSGGPEVVALVVV------AFVRILKRLAAEEGADVIILGHN 57 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhcCCCEEEEEeH------HHHHHHHHHHHHcCCCEEEEcCC
Confidence 46899999998765 777666 6778888888 88899999999999998776443
No 280
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.08 E-value=0.02 Score=44.07 Aligned_cols=67 Identities=18% Similarity=0.338 Sum_probs=46.2
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc--HHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCH
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDV 452 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~--~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~ 452 (463)
++.|..+||++|.+.+..|++. ++.+-.+|++.+. ..+. ...+...+|.+ |-+|+ .+ || .
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-------~i~~~~~~v~~~~~~~~~~-~~~g~~~vP~i--fi~g~--~i---gg---~ 64 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-------GISYEEIPLGKDITGRSLR-AVTGAMTVPQV--FIDGE--LI---GG---S 64 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCcEEEECCCChhHHHHH-HHhCCCCcCeE--EECCE--EE---eC---H
Confidence 6779999999999988777742 4777788887661 1222 34578899997 34555 22 32 5
Q ss_pred HHHHHHH
Q 012452 453 DSLMAFV 459 (463)
Q Consensus 453 ~~L~~fI 459 (463)
++|.+|+
T Consensus 65 ~~l~~~l 71 (72)
T cd03029 65 DDLEKYF 71 (72)
T ss_pred HHHHHHh
Confidence 7777775
No 281
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=96.01 E-value=0.058 Score=57.31 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=64.9
Q ss_pred CcEEEEechhHHHHHH-HHHHHcCC--CeEEEEEeCC--CCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH----HHHHh
Q 012452 112 NDIAIAFSGAEDVALI-EYAHLTGR--PFRVFSLDTG--RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ----ALVRS 182 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~~~~--~i~vi~~DTg--~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~----~~~~~ 182 (463)
.++.+.+|||.||+++ .++.+... ++..++++.+ ..+.| ..+++++++++|++.+.+......+. ..+..
T Consensus 254 ~~vg~~LSGGlDSs~iaa~a~~~~~~~~~~~~t~~~~~~~~~~E-~~~A~~vA~~lg~~~~~i~~~~~~~~~~~~~~v~~ 332 (467)
T TIGR01536 254 VPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSIGFEGSPDFDE-SPYARKVADHLGTEHHEVLFSVEEGLDALPEVIYH 332 (467)
T ss_pred CceEEEecCChhHHHHHHHHHHhcCCCCceEEEEecCCCCCCCh-HHHHHHHHHHhCCcCeEEECCHHHHHHHHHHHHHh
Confidence 4588999999998766 66666533 6788888776 34555 35899999999999877655433322 22222
Q ss_pred cCCCCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCc
Q 012452 183 KGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSP 225 (463)
Q Consensus 183 ~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~ 225 (463)
.+.|. ..|... -..-+.+..+ |.+++++|.-.||-.
T Consensus 333 ~~~p~------~~~~~~-~~~~l~~~a~~~G~~vlltG~GaDElf 370 (467)
T TIGR01536 333 LEDPT------TIRASI-PLYLLSKLAREDGVKVVLSGEGADELF 370 (467)
T ss_pred hCCCC------CCchHH-HHHHHHHHHHhcCCEEEEecCcchhcc
Confidence 22111 011111 1122333333 467999999988864
No 282
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.024 Score=45.10 Aligned_cols=52 Identities=19% Similarity=0.457 Sum_probs=38.6
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc----HHHHHHcC-CCCCCCEEEE
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----KEYAKQKL-QLGSFPTILF 434 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~----~~l~~~~~-~I~~~PTi~~ 434 (463)
++.|..++||+|+..+..|.+ .++.+..+|++.++ .+.. ++. +..++|.|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-------~g~~~~~i~~~~~~~~~~~~~~-~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-------KGVDYEEIDVDDDEPEEAREMV-KRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-------cCCCcEEEEecCCcHHHHHHHH-HHhCCCCCcCEEEE
Confidence 567889999999998877773 25888888887763 2444 344 6889999864
No 283
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.96 E-value=0.024 Score=45.97 Aligned_cols=59 Identities=22% Similarity=0.441 Sum_probs=40.0
Q ss_pred CCcEEEEEec----CCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH---HcCCCCCCCEEEEEeCCC
Q 012452 371 QEPWLVVLYA----PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILFFPKHS 439 (463)
Q Consensus 371 ~k~vlV~FyA----~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~---~~~~I~~~PTi~~f~~g~ 439 (463)
+.+|+|+-.. |||++|+..+..|++. ++.|-.+|++.+ .++.. +..+-.++|.++ -+|+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~vf--i~g~ 72 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTFDILED-EEVRQGLKEYSNWPTFPQLY--VNGE 72 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEEE--ECCE
Confidence 4566665442 7999999988888765 467788888776 44330 344677899983 4555
No 284
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=95.87 E-value=0.043 Score=51.15 Aligned_cols=160 Identities=19% Similarity=0.248 Sum_probs=90.0
Q ss_pred HHHHHhccCCHHHHHHHHHHH-------cC------CcEEEEechhHHHHHHH-HHHHcCCCeEEEEEeCC--CCcHHHH
Q 012452 89 QFAKELENASPLEIMDRALEK-------FG------NDIAIAFSGAEDVALIE-YAHLTGRPFRVFSLDTG--RLNPETY 152 (463)
Q Consensus 89 ~l~~~l~~~~a~eil~~~~~~-------~~------~~i~vafSGGKDS~vl~-L~~~~~~~i~vi~~DTg--~~fpeT~ 152 (463)
.+.+...+....++++.++.. |. .+++||||||-||+..- +++..+ +.+|.| ...++..
T Consensus 25 r~~~~~~~~e~~~rl~e~l~~RL~g~~ef~r~~id~~kiaVA~SGG~DSsas~iilR~~g-----~~v~p~t~~Lp~~ir 99 (255)
T COG1365 25 RVSELDGEKEVYERLRELLKKRLEGEKEFERIKIDKPKIAVAYSGGVDSSASAIILRWAG-----FTVDPGTAILPDHIR 99 (255)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhcCchhcccCCCCCceEEEEecCCcchHHHHHHHHhhc-----eeeccccccCCHHHh
Confidence 333333444456666665531 11 25999999999987663 444455 555655 4567999
Q ss_pred HHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHccC--ceEEEeeeccCCcccccC
Q 012452 153 RFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSE 230 (463)
Q Consensus 153 ~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~--~~~itG~Rr~ES~~~Ra~ 230 (463)
.-.++++..+|....++.-+...++.-.-. |.+. ..-.|.... .....+..++. +++++|.--.-+
T Consensus 100 ~n~~~l~~~lg~~p~yveedl~~i~kGaln-GRfh----pCGRCh~~I-~~~V~~k~re~di~~vafGDlLs~G------ 167 (255)
T COG1365 100 RNKEELETLLGEVPEYVEEDLEDIEKGALN-GRFH----PCGRCHSMI-ENAVMDKARELDIDVVAFGDLLSTG------ 167 (255)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhhcc-CCCC----CcchHHHHH-HHHHHHHHHhcCCeEEEEccccccc------
Confidence 999999999997766654443333322211 3221 112233322 23333444444 588888643322
Q ss_pred CCceecCCCCcCCcCCCCCeEEEEe--CccCcHHHHHHHHHhCCCCc
Q 012452 231 IPVVQVDPVFEGLEGGVGSLVKWNP--VANVKGNDIWNFLRTMDVPI 275 (463)
Q Consensus 231 ~~~~~~d~~~~~~~~~~~~~~k~~P--I~dWt~~DVw~yi~~~~lp~ 275 (463)
...+..+ .+++++|= ++.-|..|+-..+..+++..
T Consensus 168 ~~svy~e----------D~i~rlnlPAflAltK~Elr~il~~~~~e~ 204 (255)
T COG1365 168 YGSVYRE----------DGIFRLNLPAFLALTKDELRSILKWNGYEL 204 (255)
T ss_pred ccceecc----------CCEEEEccHHHHhhCcHHHHHHHHhcCccc
Confidence 1112222 25667652 34578889999888887743
No 285
>PRK10638 glutaredoxin 3; Provisional
Probab=95.67 E-value=0.034 Score=44.19 Aligned_cols=54 Identities=19% Similarity=0.355 Sum_probs=39.0
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHH----HHHHcCCCCCCCEEEEEeCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQLGSFPTILFFPKHS 439 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~----l~~~~~~I~~~PTi~~f~~g~ 439 (463)
++.|..+||++|+.....|++. ++.+..+|++.+ .+ +. +..+...+|+++ .+|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-------gi~y~~~dv~~~-~~~~~~l~-~~~g~~~vP~i~--~~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-------GVSFQEIPIDGD-AAKREEMI-KRSGRTTVPQIF--IDAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCCC-HHHHHHHH-HHhCCCCcCEEE--ECCE
Confidence 5678889999999988888753 477778888776 43 33 445678899884 3454
No 286
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=95.59 E-value=0.093 Score=53.78 Aligned_cols=144 Identities=17% Similarity=0.160 Sum_probs=89.7
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeEEEEE-eCCCCcHHHHHHHHHHH-HHh---CCcEEEEcCChHHHHHHHHhcCCC
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSL-DTGRLNPETYRFFDEVE-KHF---GIRIEYMFPDAVEVQALVRSKGLF 186 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~-DTg~~fpeT~~~~~~~~-~~~---gl~i~~~~p~~~~~~~~~~~~g~~ 186 (463)
+.++-.|||-||-|. .|+.+.+.++..+|+ ..++.-++..+-+..+. ..+ +.++..+.-+-.+.+..+.....
T Consensus 177 k~l~LlSGGIDSPVA~~l~mkRG~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f~~v~~~i~~~~~- 255 (383)
T COG0301 177 KVLLLLSGGIDSPVAAWLMMKRGVEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPFTEVQEEILEKVP- 255 (383)
T ss_pred cEEEEEeCCCChHHHHHHHHhcCCEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEchHHHHHHHHhhcC-
Confidence 477788999999776 888888988877777 45567777777777777 444 33444433333444444433321
Q ss_pred CCCccchhhhhhchhhhHHHHHHc-----cCceEEEeeeccCCc-ccccCCCceecCCCCcCCcCCCCCeEEEEeCccCc
Q 012452 187 SFYEDGHQECCRVRKVRPLRRALK-----GLRAWITGQRKDQSP-GTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVK 260 (463)
Q Consensus 187 ~~~~~~~~~Cc~~~Kv~Pl~r~l~-----~~~~~itG~Rr~ES~-~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt 260 (463)
..+-|-.+|..-++.|-+ |..+++||-.-.|=. ++=.++..++.- .+..-++||+.|.
T Consensus 256 ------~~y~~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQVASQTl~nL~~i~~~----------t~~pIlRPLI~~D 319 (383)
T COG0301 256 ------ESYRCVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQVASQTLENLRVIDSV----------TNTPVLRPLIGLD 319 (383)
T ss_pred ------ccceehHHHHHHHHHHHHHHHHhCCeEEEecCcchhhhHhHHHHHHHHHhc----------cCCceeccccCCC
Confidence 223344555444444432 556899986655521 011222222211 2466799999999
Q ss_pred HHHHHHHHHhCCC
Q 012452 261 GNDIWNFLRTMDV 273 (463)
Q Consensus 261 ~~DVw~yi~~~~l 273 (463)
.+||-+.-++-|.
T Consensus 320 K~eIi~~Ar~IgT 332 (383)
T COG0301 320 KEEIIEIARRIGT 332 (383)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999988775
No 287
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.57 E-value=0.17 Score=42.07 Aligned_cols=90 Identities=13% Similarity=0.262 Sum_probs=62.9
Q ss_pred ChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEe
Q 012452 357 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 436 (463)
Q Consensus 357 t~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~ 436 (463)
+.+++++++. .++.++|-|+..--. .+...|.++|+.+.+ .+.|+... + .++. ..+++ .|++++|+
T Consensus 7 s~~~l~~f~~---~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~-~~~~-~~~~~--~~~ivl~~ 72 (104)
T cd03069 7 TEAEFEKFLS---DDDASVVGFFEDEDS---KLLSEFLKAADTLRE-SFRFAHTS---D-KQLL-EKYGY--GEGVVLFR 72 (104)
T ss_pred CHHHHHHHhc---cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh-cCEEEEEC---h-HHHH-HhcCC--CCceEEEe
Confidence 3456777665 677777777766433 466788999999976 57886543 2 5667 78888 78888883
Q ss_pred C------CCcCeeecCCCCCCHHHHHHHHHH
Q 012452 437 K------HSSKPIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 437 ~------g~~~~~~y~gg~~~~~~L~~fI~~ 461 (463)
+ -......|.| ..+.+.|.+||..
T Consensus 73 p~~~~~k~de~~~~y~g-~~~~~~l~~fi~~ 102 (104)
T cd03069 73 PPRLSNKFEDSSVKFDG-DLDSSKIKKFIRE 102 (104)
T ss_pred chhhhcccCcccccccC-cCCHHHHHHHHHh
Confidence 3 2222466887 5789999999975
No 288
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=95.32 E-value=0.0079 Score=59.05 Aligned_cols=88 Identities=18% Similarity=0.381 Sum_probs=69.2
Q ss_pred CCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCC
Q 012452 369 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE 448 (463)
Q Consensus 369 ~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg 448 (463)
++..++-+.||+.||+..+...|.++-....|.. +....++=....+.+. .+|++.+.|++++....- +..|.|
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~--i~h~~vee~~~lpsv~-s~~~~~~~ps~~~~n~t~--~~~~~~- 147 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS--IQHFAVEESQALPSVF-SSYGIHSEPSNLMLNQTC--PASYRG- 147 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhccc--cccccHHHHhhcccch-hccccccCCcceeecccc--chhhcc-
Confidence 3467899999999999999999999988888874 4433333222225677 799999999999887766 788887
Q ss_pred CCCHHHHHHHHHHh
Q 012452 449 RRDVDSLMAFVDAL 462 (463)
Q Consensus 449 ~~~~~~L~~fI~~l 462 (463)
.++.++|++|..++
T Consensus 148 ~r~l~sLv~fy~~i 161 (319)
T KOG2640|consen 148 ERDLASLVNFYTEI 161 (319)
T ss_pred cccHHHHHHHHHhh
Confidence 79999999998754
No 289
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.32 E-value=0.037 Score=48.57 Aligned_cols=33 Identities=12% Similarity=0.314 Sum_probs=28.8
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG 402 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~ 402 (463)
..+..|+.|+.++||+|+.+.|.+.++..++.+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 467899999999999999999999998877644
No 290
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=95.27 E-value=0.42 Score=39.55 Aligned_cols=97 Identities=15% Similarity=0.230 Sum_probs=64.8
Q ss_pred eec-ChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEE
Q 012452 354 VTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432 (463)
Q Consensus 354 ~~l-t~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi 432 (463)
..+ +.++++.++. ..+..++|-|+..--. .....|.++|..+.+ .+.|+... + .++. ..+++. .|++
T Consensus 3 ~~i~~~~~~e~~~~--~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~-~~~~-~~~~~~-~~~i 70 (102)
T cd03066 3 EIINSERELQAFEN--IEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP-YIKFFATF---D-SKVA-KKLGLK-MNEV 70 (102)
T ss_pred eEcCCHHHHHHHhc--ccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc-CCEEEEEC---c-HHHH-HHcCCC-CCcE
Confidence 444 3455777652 1356666667665433 456688999999976 57775432 2 5667 677765 7999
Q ss_pred EEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 433 LFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 433 ~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
++|++.......|.+|..+.+.|.+||..-
T Consensus 71 ~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 71 DFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 999774443567834478999999999753
No 291
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=95.10 E-value=0.053 Score=51.72 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=64.6
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeE-EEEEeCCC----Cc-HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFR-VFSLDTGR----LN-PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 185 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~-vi~~DTg~----~f-peT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~ 185 (463)
+++++|||||||++. +.+.+. .++. ++..-... -| -...+.++..++.+|++++.+.....
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~-~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~----------- 69 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE-HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGE----------- 69 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc-CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCc-----------
Confidence 478899999999765 555554 3433 22222211 11 12347788999999999865532111
Q ss_pred CCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCccCcHHH
Q 012452 186 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND 263 (463)
Q Consensus 186 ~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~D 263 (463)
+ ...++.+.+.++ +.+++++|-=..+- +|.....+.-. -|+.-+.||..-..++
T Consensus 70 ---~---------e~~~~~l~~~l~~~gv~~vv~GdI~s~~--qr~~~e~vc~~----------~gl~~~~PLW~~d~~~ 125 (222)
T TIGR00289 70 ---E---------EKEVEDLAGQLGELDVEALCIGAIESNY--QKSRIDKVCRE----------LGLKSIAPLWHADPEK 125 (222)
T ss_pred ---h---------hHHHHHHHHHHHHcCCCEEEECccccHH--HHHHHHHHHHH----------cCCEEeccccCCCHHH
Confidence 0 111233444443 45688888654442 33333221111 2577899998777666
Q ss_pred HH
Q 012452 264 IW 265 (463)
Q Consensus 264 Vw 265 (463)
+-
T Consensus 126 l~ 127 (222)
T TIGR00289 126 LM 127 (222)
T ss_pred HH
Confidence 43
No 292
>PRK10824 glutaredoxin-4; Provisional
Probab=95.09 E-value=0.064 Score=45.73 Aligned_cols=67 Identities=12% Similarity=0.230 Sum_probs=41.1
Q ss_pred hhHHHHHhhcCCCCcEEEEEec----CCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH---HcCCCCCCCE
Q 012452 359 TGMENLARLDHRQEPWLVVLYA----PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPT 431 (463)
Q Consensus 359 ~~f~~~i~~~~~~k~vlV~FyA----~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~---~~~~I~~~PT 431 (463)
+-+++++. ..+|+|+--. ||||+|+.....|..+ ++.+..+|++.+ .++.. +.-+-..+|.
T Consensus 6 ~~v~~~I~----~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-------~i~~~~idi~~d-~~~~~~l~~~sg~~TVPQ 73 (115)
T PRK10824 6 EKIQRQIA----ENPILLYMKGSPKLPSCGFSAQAVQALSAC-------GERFAYVDILQN-PDIRAELPKYANWPTFPQ 73 (115)
T ss_pred HHHHHHHh----cCCEEEEECCCCCCCCCchHHHHHHHHHHc-------CCCceEEEecCC-HHHHHHHHHHhCCCCCCe
Confidence 34455553 4555554433 6999999998888765 255566777766 44431 2235568888
Q ss_pred EEEEeCCC
Q 012452 432 ILFFPKHS 439 (463)
Q Consensus 432 i~~f~~g~ 439 (463)
|+ -+|+
T Consensus 74 IF--I~G~ 79 (115)
T PRK10824 74 LW--VDGE 79 (115)
T ss_pred EE--ECCE
Confidence 75 4444
No 293
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.35 Score=43.47 Aligned_cols=92 Identities=14% Similarity=0.226 Sum_probs=66.5
Q ss_pred CCCcEEEEEe-cCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------cHHHHHHcCCCCC
Q 012452 370 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLGS 428 (463)
Q Consensus 370 ~~k~vlV~Fy-A~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~--------------------~~~l~~~~~~I~~ 428 (463)
++++||++|| ..+++.|-...-.|++...++...++.++.|..|.. +..++ +.|+|..
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~-~~ygv~~ 107 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVA-EAYGVWG 107 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHH-HHhCccc
Confidence 5779999999 789999999999999999999877788888876532 15677 7888733
Q ss_pred ------------CCEEEEEeCCCcCeeecCC--CCCCHHHHHHHHHHh
Q 012452 429 ------------FPTILFFPKHSSKPIKYPS--ERRDVDSLMAFVDAL 462 (463)
Q Consensus 429 ------------~PTi~~f~~g~~~~~~y~g--g~~~~~~L~~fI~~l 462 (463)
.++.++++..+.+...+.. -.-..+++.+.|+++
T Consensus 108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred ccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 4677777665543333322 134567788877765
No 294
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=94.22 E-value=0.17 Score=47.85 Aligned_cols=125 Identities=14% Similarity=0.229 Sum_probs=80.4
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeE-EEEEeC--C----CCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcC
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFR-VFSLDT--G----RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKG 184 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~-vi~~DT--g----~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g 184 (463)
+++..+||||||... |++.+.+..+. ++.+-+ + +|+| -.++++.+++-.|+++.......
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G~eV~~Ll~~~p~~~dS~m~H~~-n~~~~~~~Ae~~gi~l~~~~~~g----------- 69 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEGHEVVYLLTVKPENGDSYMFHTP-NLELAELQAEAMGIPLVTFDTSG----------- 69 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcCCeeEEEEEEecCCCCeeeeecc-chHHHHHHHHhcCCceEEEecCc-----------
Confidence 367789999999755 88887776643 222222 2 1223 34667888888899987764443
Q ss_pred CCCCCccchhhhhhchhhhHHHHHHccCc--eEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCccCcHH
Q 012452 185 LFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGN 262 (463)
Q Consensus 185 ~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~--~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~ 262 (463)
...+.++.|.++|++++ ++++|-=..+- ++..+..+... -++..+.||..-..+
T Consensus 70 ------------~~e~eve~L~~~l~~l~~d~iv~GaI~s~y--qk~rve~lc~~----------lGl~~~~PLWg~d~~ 125 (223)
T COG2102 70 ------------EEEREVEELKEALRRLKVDGIVAGAIASEY--QKERVERLCEE----------LGLKVYAPLWGRDPE 125 (223)
T ss_pred ------------cchhhHHHHHHHHHhCcccEEEEchhhhHH--HHHHHHHHHHH----------hCCEEeecccCCCHH
Confidence 22334677888888765 88888654442 34443332211 257789999988888
Q ss_pred HHHHHHHhCCC
Q 012452 263 DIWNFLRTMDV 273 (463)
Q Consensus 263 DVw~yi~~~~l 273 (463)
++-.-+-..|+
T Consensus 126 ell~e~~~~Gf 136 (223)
T COG2102 126 ELLEEMVEAGF 136 (223)
T ss_pred HHHHHHHHcCC
Confidence 88777776664
No 295
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.14 Score=42.77 Aligned_cols=67 Identities=16% Similarity=0.341 Sum_probs=43.2
Q ss_pred hHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcC----CCCCCCEEEEE
Q 012452 360 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKL----QLGSFPTILFF 435 (463)
Q Consensus 360 ~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~----~I~~~PTi~~f 435 (463)
.+.+++. ..+|+ .|..+||++|+.++..|.+ +.. ...++.+|-+.+..++- +.+ +-..+|.++
T Consensus 6 ~v~~~i~----~~~VV-ifSKs~C~~c~~~k~ll~~----~~v-~~~vvELD~~~~g~eiq-~~l~~~tg~~tvP~vF-- 72 (104)
T KOG1752|consen 6 KVRKMIS----ENPVV-IFSKSSCPYCHRAKELLSD----LGV-NPKVVELDEDEDGSEIQ-KALKKLTGQRTVPNVF-- 72 (104)
T ss_pred HHHHHhh----cCCEE-EEECCcCchHHHHHHHHHh----CCC-CCEEEEccCCCCcHHHH-HHHHHhcCCCCCCEEE--
Confidence 3555553 44444 4899999999998777776 333 56788888776644444 222 345889875
Q ss_pred eCCC
Q 012452 436 PKHS 439 (463)
Q Consensus 436 ~~g~ 439 (463)
-+|+
T Consensus 73 I~Gk 76 (104)
T KOG1752|consen 73 IGGK 76 (104)
T ss_pred ECCE
Confidence 4555
No 296
>PTZ00062 glutaredoxin; Provisional
Probab=93.85 E-value=0.19 Score=47.31 Aligned_cols=67 Identities=19% Similarity=0.351 Sum_probs=42.0
Q ss_pred hhHHHHHhhcCCCCcEEEEEe----cCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH---HcCCCCCCCE
Q 012452 359 TGMENLARLDHRQEPWLVVLY----APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPT 431 (463)
Q Consensus 359 ~~f~~~i~~~~~~k~vlV~Fy----A~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~---~~~~I~~~PT 431 (463)
+-+++++. + .+|+|+-- .|+|++|++....|.+. ++.+..+|++++ .++.. +.-+-..+|.
T Consensus 104 ~~v~~li~---~-~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-------~i~y~~~DI~~d-~~~~~~l~~~sg~~TvPq 171 (204)
T PTZ00062 104 EKIERLIR---N-HKILLFMKGSKTFPFCRFSNAVVNMLNSS-------GVKYETYNIFED-PDLREELKVYSNWPTYPQ 171 (204)
T ss_pred HHHHHHHh---c-CCEEEEEccCCCCCCChhHHHHHHHHHHc-------CCCEEEEEcCCC-HHHHHHHHHHhCCCCCCe
Confidence 34555553 4 44544333 47999999988887753 477888999877 54431 2234567787
Q ss_pred EEEEeCCC
Q 012452 432 ILFFPKHS 439 (463)
Q Consensus 432 i~~f~~g~ 439 (463)
++ -+|+
T Consensus 172 Vf--I~G~ 177 (204)
T PTZ00062 172 LY--VNGE 177 (204)
T ss_pred EE--ECCE
Confidence 75 3454
No 297
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=93.60 E-value=0.07 Score=50.77 Aligned_cols=133 Identities=16% Similarity=0.143 Sum_probs=63.5
Q ss_pred cEEEEechhHHHHHH-HHHHHcCCCeE-EEEEeC-CC---CcHH-HHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTGRPFR-VFSLDT-GR---LNPE-TYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 185 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~~~i~-vi~~DT-g~---~fpe-T~~~~~~~~~~~gl~i~~~~p~~~~~~~~~~~~g~ 185 (463)
+++++|||||||++. +.+.+. .++. ++++-+ +. -|.. ..+.++..++.+|+++..+.-...
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~----------- 69 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ-HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGD----------- 69 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT--EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE--------------
T ss_pred cEEEEEcCcHHHHHHHHHHHHh-CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCc-----------
Confidence 478899999999865 655555 4443 333332 21 2322 267788899999999876532110
Q ss_pred CCCCccchhhhhhchhhhHHHHHHccC--ceEEEeeeccCCcccccCCCceecCCCCcCCcCCCCCeEEEEeCccCcHHH
Q 012452 186 FSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND 263 (463)
Q Consensus 186 ~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~--~~~itG~Rr~ES~~~Ra~~~~~~~d~~~~~~~~~~~~~~k~~PI~dWt~~D 263 (463)
. ..-++.+.++++.+ ++++.|-=..+- .|.....+.-. -|+.-+.||..-..++
T Consensus 70 ---~---------~~~~~~l~~~l~~~~v~~vv~GdI~~~~--~r~~~e~vc~~----------lGl~~~~PLW~~d~~~ 125 (218)
T PF01902_consen 70 ---E---------EDYVEDLKEALKELKVEAVVFGDIDSEY--QRNWVERVCER----------LGLEAVFPLWGRDREE 125 (218)
T ss_dssp ---C---------CCHHHHHHHHHCTC--SEEE--TTS-HH--HHHHHHHHHHH----------CT-EEE-TTTT--HHH
T ss_pred ---c---------chhhHHHHHHHHHcCCCEEEECcCCcHH--HHHHHHHHHHH----------cCCEEEecccCCCHHH
Confidence 0 01134555666654 467777543332 33332221111 2577899998877766
Q ss_pred HHHHHHhCCCCccchhccCCcccCcccC
Q 012452 264 IWNFLRTMDVPINSLHSQGYISIGCEPC 291 (463)
Q Consensus 264 Vw~yi~~~~lp~npLy~~Gy~siGC~~C 291 (463)
+..- +.+.||..+=+..+
T Consensus 126 ll~e----------~i~~Gf~aiIv~V~ 143 (218)
T PF01902_consen 126 LLRE----------FIESGFEAIIVKVD 143 (218)
T ss_dssp HHHH----------HHHTT-EEEEEEEE
T ss_pred HHHH----------HHHCCCeEEEEEEe
Confidence 6443 34567766544333
No 298
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=93.59 E-value=0.15 Score=45.85 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=34.2
Q ss_pred CCcEEEEEe-cCCChhHHHh-HHHHHHHHHHhcCCCe-EEEEEEcCC
Q 012452 371 QEPWLVVLY-APWCQFCQAM-EGSYVELADKLAGNGV-KVGKFRADG 414 (463)
Q Consensus 371 ~k~vlV~Fy-A~wC~~C~~~-~p~l~~la~~~~~~~v-~f~~VD~d~ 414 (463)
+++++|+|| +.||+.|... .+.|.+..+++...++ .++.|..|.
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~ 75 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND 75 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence 455555555 8999999998 9999999999876566 577777654
No 299
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=93.40 E-value=0.17 Score=52.98 Aligned_cols=51 Identities=14% Similarity=0.355 Sum_probs=38.5
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHH---HHHHc---------CCCCCCCEEEE
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE---YAKQK---------LQLGSFPTILF 434 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~---l~~~~---------~~I~~~PTi~~ 434 (463)
|+.|..+|||+|+..+..|.+. ++.+-.+|++++ +. +. ++ .+..++|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-------gi~~~~idi~~~-~~~~~~~-~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-------DIPFTQISLDDD-VKRAEFY-AEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCCeEEEECCCC-hhHHHHH-HHHhhccccccCCCCccCeEEE
Confidence 6789999999999988777763 588888999876 42 22 12 36678999965
No 300
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=93.29 E-value=0.26 Score=43.74 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=35.3
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHh--cCCCeEEEEEEc
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKL--AGNGVKVGKFRA 412 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~--~~~~v~f~~VD~ 412 (463)
..+++|+.|+...||+|..+.+.+.++.+++ .+ ++.|...++
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEc
Confidence 4578899999999999999999999999998 44 788887765
No 301
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.10 E-value=0.15 Score=46.12 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=32.6
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEE
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVG 408 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~ 408 (463)
..++.|+.|+...||+|+.+.+.+..+.+++++ ++.|.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEE
Confidence 468899999999999999999999999988865 45544
No 302
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.21 Score=54.30 Aligned_cols=80 Identities=16% Similarity=0.334 Sum_probs=61.9
Q ss_pred eecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHH-H--HHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCC-----
Q 012452 354 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGS-Y--VELADKLAGNGVKVGKFRADGDQKEYAKQKLQ----- 425 (463)
Q Consensus 354 ~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~-l--~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~----- 425 (463)
....++.|.+.-. +++|++|....+||.-|+-|... | .++|+.++. +++-+|||-++- +++- +.|.
T Consensus 29 ~pW~~eAf~~A~~---edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~-~FV~IKVDREER-PDvD-~~Ym~~~q~ 102 (667)
T COG1331 29 YPWGEEAFAKAKE---EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE-NFVPVKVDREER-PDVD-SLYMNASQA 102 (667)
T ss_pred cccCHHHHHHHHH---hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh-CceeeeEChhhc-cCHH-HHHHHHHHH
Confidence 4457788888766 89999999999999999999874 4 478888877 788899998887 7665 4442
Q ss_pred ---CCCCCEEEEE-eCCC
Q 012452 426 ---LGSFPTILFF-PKHS 439 (463)
Q Consensus 426 ---I~~~PTi~~f-~~g~ 439 (463)
-.+.|-.+|. ++|+
T Consensus 103 ~tG~GGWPLtVfLTPd~k 120 (667)
T COG1331 103 ITGQGGWPLTVFLTPDGK 120 (667)
T ss_pred hccCCCCceeEEECCCCc
Confidence 4589955555 5555
No 303
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=92.04 E-value=0.19 Score=49.86 Aligned_cols=153 Identities=16% Similarity=0.250 Sum_probs=92.1
Q ss_pred CcEEEEechhHHHHHH-HHHHH------cCCCeEEEEEeCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChH----HHHH
Q 012452 112 NDIAIAFSGAEDVALI-EYAHL------TGRPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAV----EVQA 178 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~------~~~~i~vi~~DTg~~--fpeT~~~~~~~~~~~gl~i~~~~p~~~----~~~~ 178 (463)
..+.++-||||||||+ +.... .+....++.+|.|.. -...+..+++...+|++++.++.+..- ...+
T Consensus 52 e~v~igasGgkdstvlA~v~~~Ln~r~~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs~~dl~~~~tmd~ 131 (347)
T KOG2840|consen 52 ERVAIGASGGKDSTVLAYVLDALNERHDYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVSYKDLYGEWTMDE 131 (347)
T ss_pred CccccccccchhHHHHHHHHHHhhhhcCCCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEecHHHHhccchHHH
Confidence 4589999999999988 33322 234466788898843 346677788899999999988866432 1222
Q ss_pred HHHhcCCCCCCccchhhh---hhchhhhHHHHHHccC--ceEEEeeeccCCcccccCCCceecCC----CCcCCc-C--C
Q 012452 179 LVRSKGLFSFYEDGHQEC---CRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDP----VFEGLE-G--G 246 (463)
Q Consensus 179 ~~~~~g~~~~~~~~~~~C---c~~~Kv~Pl~r~l~~~--~~~itG~Rr~ES~~~Ra~~~~~~~d~----~~~~~~-~--~ 246 (463)
.+..-|.. .+.| |.+.+.+-|.+.-.-. .-..||...|+-. .+--+.++.-|. +..+.. . .
T Consensus 132 i~~~i~~~------~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~a-etvl~n~lrgds~rl~R~~~~~t~~~e 204 (347)
T KOG2840|consen 132 IVSEIGQE------IRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDWA-ETVLMNLLRGDSARLERLTEITTPSLE 204 (347)
T ss_pred HHHHHhhh------hhcCceeecHHHHHHHHhhccccchhhhhhcccchHHH-HHHHHHHHHhHHHHhhhccccccCccc
Confidence 33333321 2334 5666766666655533 3577899888874 443333332221 111111 0 1
Q ss_pred CCCeEEEEeCccCcHHHHHHHHHhC
Q 012452 247 VGSLVKWNPVANVKGNDIWNFLRTM 271 (463)
Q Consensus 247 ~~~~~k~~PI~dWt~~DVw~yi~~~ 271 (463)
.+.+-+.+||-+=...+|-.|-...
T Consensus 205 ~~~~~r~kplk~~~~keivLya~~~ 229 (347)
T KOG2840|consen 205 MGIIPRLKPLKYASEKEIVLYASLS 229 (347)
T ss_pred cCccccccccccchhhehhhHHHHH
Confidence 1236678899888888887775554
No 304
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=92.03 E-value=0.72 Score=47.75 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=49.0
Q ss_pred HHHHHHHHHcC-CcEEEEechhHHHHHH-HHHHH-cC-CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 012452 101 EIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHL-TG-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 171 (463)
Q Consensus 101 eil~~~~~~~~-~~i~vafSGGKDS~vl-~L~~~-~~-~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p 171 (463)
+-|.|+.+..| .+++++.|||-||+|+ .|.++ .+ ..+..+++|-|..-..--+.+++....+|++|.++..
T Consensus 219 e~I~~i~k~vG~~~Vl~~vSGgvdStV~a~Ll~~alg~~R~~ai~vdNG~mrk~Ea~~V~~tl~~lgi~i~v~~a 293 (552)
T KOG1622|consen 219 ECINEIRKWVGDYKVLVAVSGGVDSTVCAALLRRALGPDRVHAIHVDNGFMRKKEAEQVEKTLVYLGIPITVVDA 293 (552)
T ss_pred HHHHHHHHHhcccceEEEecCCchHHHHHHHHHHhhCCCceEEEEecccchhhhHHHHHHHHHHHcCCceEEeec
Confidence 34555556555 5689999999999988 44444 45 3589999999976443334444444459999988744
No 305
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=91.42 E-value=1 Score=48.76 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=61.8
Q ss_pred CCcEEEEechhHHHHHH-HHHHHcCCCeE--EEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHH----HHHHHHh
Q 012452 111 GNDIAIAFSGAEDVALI-EYAHLTGRPFR--VFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVE----VQALVRS 182 (463)
Q Consensus 111 ~~~i~vafSGGKDS~vl-~L~~~~~~~i~--vi~~DTg~~-fpeT~~~~~~~~~~~gl~i~~~~p~~~~----~~~~~~~ 182 (463)
..++.+.+|||-||.++ .++.+...... -+.++++.. ++|+ ++.+++++.+|.+.+.+.-...+ +.+.+..
T Consensus 230 dvpvg~~lSGGlDSS~Iaa~a~~~~~~~~~~~fsvg~~~~~~~D~-~~a~~~A~~lg~~h~~~~~~~~e~~~~~~~vv~~ 308 (542)
T COG0367 230 DVPVGVFLSGGLDSSLIAAIAAEELGKEGKTTFTVGFEDSDSPDA-KYARAVAKFLGTPHHEIILTNEELLNALPEVVKA 308 (542)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHhccccceeeeEeecCCCCCchH-HHHHHHHHHhCCCcEEEeecHHHHHHHHHHHHhh
Confidence 45688899999998776 67766543322 267777766 5565 78999999999976544333222 2222322
Q ss_pred cCCCCCCccchhhhhhchhhhHHHHHHc-cCceEEEeeeccCCc
Q 012452 183 KGLFSFYEDGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQSP 225 (463)
Q Consensus 183 ~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~-~~~~~itG~Rr~ES~ 225 (463)
...|.. ...+.-...+. +.+.+ +.+++++|.-+||=.
T Consensus 309 ~~~p~~----~~~~~ply~~~--~~a~~~g~kVvLSGeGADElF 346 (542)
T COG0367 309 LDTPGG----MAASIPLYLLS--RKARAEGEKVVLSGEGADELF 346 (542)
T ss_pred cCCCCc----ccchhHHHHHH--HhhhhcCcEEeecCccHHHHh
Confidence 222221 11111111111 11111 347999999999975
No 306
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=91.08 E-value=3.5 Score=34.51 Aligned_cols=92 Identities=13% Similarity=0.157 Sum_probs=59.1
Q ss_pred ChhhHHHHHhhcCCC-CcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEE
Q 012452 357 NRTGMENLARLDHRQ-EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 435 (463)
Q Consensus 357 t~~~f~~~i~~~~~~-k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f 435 (463)
+.++++.++. .. +.++|-|+..--. .+...|.++|+.+.+ .+.|+... + .++. .++++. .|.+++|
T Consensus 7 s~~ele~f~~---~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd-d~~F~~t~---~-~~~~-~~~~~~-~~~vvl~ 73 (107)
T cd03068 7 TLKQVQEFLR---DGDDVIIIGVFSGEED---PAYQLYQDAANSLRE-DYKFHHTF---D-SEIF-KSLKVS-PGQLVVF 73 (107)
T ss_pred CHHHHHHHHh---cCCCEEEEEEECCCCC---HHHHHHHHHHHhccc-CCEEEEEC---h-HHHH-HhcCCC-CCceEEE
Confidence 3456777664 44 6677777765433 456678899999977 57775433 2 5667 678775 5777777
Q ss_pred eC------CCcCeeecCCCCCCHHH-HHHHHHH
Q 012452 436 PK------HSSKPIKYPSERRDVDS-LMAFVDA 461 (463)
Q Consensus 436 ~~------g~~~~~~y~gg~~~~~~-L~~fI~~ 461 (463)
.. =......|.+...+.++ |.+||++
T Consensus 74 rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 74 QPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred CcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 32 22235777762145545 9999975
No 307
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=90.43 E-value=2.7 Score=46.10 Aligned_cols=106 Identities=18% Similarity=0.149 Sum_probs=63.6
Q ss_pred CcEEEEechhHHHHHH-HHHHHc-CCCeEEEEEeCCC----CcHHHHHHHHHHHHHhCCcEEEEcCChHH----HHHHHH
Q 012452 112 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGR----LNPETYRFFDEVEKHFGIRIEYMFPDAVE----VQALVR 181 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~~-~~~i~vi~~DTg~----~fpeT~~~~~~~~~~~gl~i~~~~p~~~~----~~~~~~ 181 (463)
.++.+..|||-||.++ .++.+. ..++..+++.... .+.|+ +|++.+++++|.+.+.+.....+ +...+.
T Consensus 261 ~pvg~~LSGGlDSs~Iaa~~~~~~~~~l~tftigf~~~~~~~~dE~-~~A~~vA~~~g~~h~~i~~~~~~~~~~l~~~v~ 339 (589)
T TIGR03104 261 VPVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFEDVGGEKGDEF-EYSDIIAERFHTRHHKIRIPNHRVLPALPEAVA 339 (589)
T ss_pred CceeEEecCCccHHHHHHHHHHhcCCCceEEEEEecCCCCCCCChH-HHHHHHHHHhCCcCeEEEcCHHHHHHHHHHHHH
Confidence 4588999999998766 555554 3456666554321 35665 78999999999988666544433 233334
Q ss_pred hcCCCCCCccchhhhhhchhhhHHHHHH-ccCceEEEeeeccCCc
Q 012452 182 SKGLFSFYEDGHQECCRVRKVRPLRRAL-KGLRAWITGQRKDQSP 225 (463)
Q Consensus 182 ~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l-~~~~~~itG~Rr~ES~ 225 (463)
..+.|....... .. .-+.++. ++.+++++|.=.||-.
T Consensus 340 ~~~~P~~~~~~~--~~-----~~l~~~a~~~~kV~LsGeGaDElF 377 (589)
T TIGR03104 340 AMSEPMVSHDCV--AF-----YLLSEEVSKHVKVVQSGQGADEVF 377 (589)
T ss_pred HhCCCCCCchHH--HH-----HHHHHHHhCCCeEEeecCchHhcc
Confidence 344332111111 00 1133333 3567999999999875
No 308
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=89.74 E-value=1.7 Score=48.14 Aligned_cols=107 Identities=15% Similarity=0.095 Sum_probs=61.2
Q ss_pred CcEEEEechhHHHHHH-HHHHH-cCCCeEEEEEeCCC-CcHHHHHHHHHHHHHhCCcEEEEcCChHHH---HHHHHhcCC
Q 012452 112 NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGR-LNPETYRFFDEVEKHFGIRIEYMFPDAVEV---QALVRSKGL 185 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~-~~~~i~vi~~DTg~-~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~---~~~~~~~g~ 185 (463)
.+|.+..|||-||.++ .++.+ ...++..+++.... .+.|. .+++.+++++|.+.+.+......+ .......+.
T Consensus 259 ~~vg~~LSGGlDSs~Iaa~~~~~~~~~i~t~s~~~~~~~~dE~-~~A~~vA~~~g~~h~~~~~~~~~~~~~~~~~~~~~~ 337 (628)
T TIGR03108 259 VPLGAFLSGGVDSSAVVALMAGLSDTPVNTCSIAFDDPAFDES-AYARQVAERYGTNHRVETVDPDDFSLVDRLAGLYDE 337 (628)
T ss_pred CcceEeecCCccHHHHHHHHHHhcCCCCcEEEEecCCCCCChH-HHHHHHHHHhCCCCeEEecCHHHHHHHHHHHHHhCC
Confidence 3578889999998766 55554 34456666665432 34564 789999999999876655443322 222222232
Q ss_pred CCCCccchhhhhhchhhhHHHHHHccCceEEEeeeccCCc
Q 012452 186 FSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSP 225 (463)
Q Consensus 186 ~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG~Rr~ES~ 225 (463)
|.. +...+.. ..-.+.+-++.+++++|.=.||=.
T Consensus 338 P~~--~~~~~~~----~~~~~~a~~~~kV~LsG~GgDElf 371 (628)
T TIGR03108 338 PFA--DSSALPT----YRVCELARKRVTVALSGDGGDELF 371 (628)
T ss_pred CCC--CchHHHH----HHHHHHHHCCCCEEEeccchhhcc
Confidence 211 1111111 111112334668999999888865
No 309
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=89.74 E-value=0.41 Score=45.07 Aligned_cols=40 Identities=28% Similarity=0.629 Sum_probs=31.8
Q ss_pred CCcEEEEEecCCChhHHHhHHHH---HHHHHHhcCCCeEEEEEE
Q 012452 371 QEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFR 411 (463)
Q Consensus 371 ~k~vlV~FyA~wC~~C~~~~p~l---~~la~~~~~~~v~f~~VD 411 (463)
+++.||.|+.-.||||..+.+.+ ..+.+.+.+ ++.|..+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEec
Confidence 46779999999999999999976 788888876 55555443
No 310
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=88.42 E-value=1.4 Score=39.25 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=35.9
Q ss_pred EEEEecC------CChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHH---HcCCC----CCCCEEEE
Q 012452 375 LVVLYAP------WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQL----GSFPTILF 434 (463)
Q Consensus 375 lV~FyA~------wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~---~~~~I----~~~PTi~~ 434 (463)
+|.|.++ +|++|+..+..|+.+ +|.|-.+|++.+ .++.+ +.++- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-------~V~~~e~DVs~~-~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-------RVKFDERDVSMD-SGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-------CCcEEEEECCCC-HHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4556677 899999998888764 588889999876 44330 33343 57888753
No 311
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=88.18 E-value=2.6 Score=45.89 Aligned_cols=107 Identities=16% Similarity=0.235 Sum_probs=60.7
Q ss_pred CcEEEEechhHHHHHH-HHHHHcC--------------CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHH
Q 012452 112 NDIAIAFSGAEDVALI-EYAHLTG--------------RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV 176 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~~~--------------~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~ 176 (463)
.++.+.+|||-||+++ .++.+.. +++.-+.+.... .+| ..+++.+++++|.+.+.+.....+.
T Consensus 228 vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~~-~~D-~~~A~~vA~~lg~~h~~v~~t~~e~ 305 (554)
T PRK09431 228 VPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLEG-SPD-LKAAREVADHLGTVHHEIHFTVQEG 305 (554)
T ss_pred CceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCCC-CCh-HHHHHHHHHHhCCccEEEEeCHHHH
Confidence 4588999999998766 6666532 245656655432 555 4789999999999886655443332
Q ss_pred ----HHHHHhcCCCCCCccchhhhhhchhhhHHHHHH--ccCceEEEeeeccCCc
Q 012452 177 ----QALVRSKGLFSFYEDGHQECCRVRKVRPLRRAL--KGLRAWITGQRKDQSP 225 (463)
Q Consensus 177 ----~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l--~~~~~~itG~Rr~ES~ 225 (463)
...+.....+. +. ..+..... .-+.+.+ .+.+++++|.=.||=.
T Consensus 306 ~~~l~~vi~~le~~d-p~-~~~~~~p~---yll~~~~~~~gvkvvLsGeGaDElF 355 (554)
T PRK09431 306 LDALRDVIYHLETYD-VT-TIRASTPM---YLMARKIKAMGIKMVLSGEGADELF 355 (554)
T ss_pred HHHHHHHHHHHhccC-Cc-cchhHHHH---HHHHHHHHHcCCEEEEecCchhhhh
Confidence 22222111100 00 00101000 1123332 3678999999999865
No 312
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=87.03 E-value=2.2 Score=46.65 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=38.0
Q ss_pred CcEEEEechhHHHHHH-HHHHHcC----------CCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEc
Q 012452 112 NDIAIAFSGAEDVALI-EYAHLTG----------RPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMF 170 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~~~----------~~i~vi~~DTg~~-fpeT~~~~~~~~~~~gl~i~~~~ 170 (463)
.++.+.+|||-||+++ .++.+.. +++.-+. .|.+ .|| ..+.+++++++|.+.+.+.
T Consensus 226 vpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfs--ig~~~~~D-~~~Ar~vA~~lg~~h~ev~ 293 (578)
T PLN02549 226 VPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFC--VGLEGSPD-LKAAREVADYLGTVHHEFH 293 (578)
T ss_pred CceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEe--cCCCCCCH-HHHHHHHHHHhCCCCeEEE
Confidence 3589999999998766 6665531 2343333 4443 455 4689999999999776543
No 313
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=86.65 E-value=3.5 Score=31.23 Aligned_cols=52 Identities=12% Similarity=0.230 Sum_probs=34.6
Q ss_pred EEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEE
Q 012452 376 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 433 (463)
Q Consensus 376 V~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~ 433 (463)
+.|+.+||++|++..-.+++. +-.+.+..+|......++. +......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~~~~~~~~~-~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-----GITVELREVELKNKPAEML-AASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-----CCCcEEEEeCCCCCCHHHH-HHCCCCCCCEEE
Confidence 467889999999876555543 3235566666554325665 555678999995
No 314
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=86.12 E-value=4.5 Score=44.37 Aligned_cols=107 Identities=13% Similarity=0.194 Sum_probs=59.2
Q ss_pred CcEEEEechhHHHHHH-HHHHHcC------------CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH---
Q 012452 112 NDIAIAFSGAEDVALI-EYAHLTG------------RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE--- 175 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~~~------------~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~--- 175 (463)
.++.+.+|||-||.++ .++.+.. .++.-+.+... ..|| ..+++++++++|.+.+.+.....+
T Consensus 238 vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~-~~~D-~~~Ar~vA~~lg~~h~~i~~~~~e~~~ 315 (586)
T PTZ00077 238 VPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLE-GSPD-LKAARKVAEYLGTEHHEFTFTVEEGID 315 (586)
T ss_pred CceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCC-CCch-HHHHHHHHHHhCCcCcEEEECHHHHHH
Confidence 4588999999998766 6666532 34555554331 2566 478999999999987655433322
Q ss_pred -HHHHHHhcCCCCCCccchhhhhhchhhhHHHHHHc--cCceEEEeeeccCCc
Q 012452 176 -VQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSP 225 (463)
Q Consensus 176 -~~~~~~~~g~~~~~~~~~~~Cc~~~Kv~Pl~r~l~--~~~~~itG~Rr~ES~ 225 (463)
+...+.....+... ..+.... ..-+.+.++ +.+++++|.-.||=.
T Consensus 316 ~l~~~i~~le~~~~~--~~~~~~p---~yll~r~a~~~gvkVvLsGeGaDElF 363 (586)
T PTZ00077 316 ALPDVIYHTETYDVT--TIRASTP---MYLLSRRIKALGIKMVLSGEGSDELF 363 (586)
T ss_pred HHHHHHHHhcCCCCC--CcchHHH---HHHHHHHHHhcCCeEEEecCchhhhc
Confidence 22222212211100 0010010 011233333 468999999988864
No 315
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=85.62 E-value=2.5 Score=37.68 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=53.2
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc----------HHHHH
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------KEYAK 421 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~----------~~l~~ 421 (463)
.+..++.+.+.---- +++.+||.=.|+-|+.--+. ..|+.|.++|++.++.++.+-|++.. .++|+
T Consensus 9 ~~~~~~G~~~~l~~~---~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~ 84 (162)
T COG0386 9 SVKDIDGEPVSLSDY---KGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQ 84 (162)
T ss_pred eeeccCCCCccHHHh---CCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHH
Confidence 455555544433222 78999999999999988754 47888999999888999999887531 45675
Q ss_pred HcCCCCCCCEE
Q 012452 422 QKLQLGSFPTI 432 (463)
Q Consensus 422 ~~~~I~~~PTi 432 (463)
..|+|+ +|.+
T Consensus 85 ~~YgVt-Fp~f 94 (162)
T COG0386 85 LNYGVT-FPMF 94 (162)
T ss_pred hccCce-eeee
Confidence 667664 4433
No 316
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=85.03 E-value=2.1 Score=44.45 Aligned_cols=74 Identities=19% Similarity=0.373 Sum_probs=41.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHH--cCCcEEEEechhHHHHHH-HHHHHc---CCCeEEEEEeCCCCcHHHH---------
Q 012452 88 EQFAKELENASPLEIMDRALEK--FGNDIAIAFSGAEDVALI-EYAHLT---GRPFRVFSLDTGRLNPETY--------- 152 (463)
Q Consensus 88 ~~l~~~l~~~~a~eil~~~~~~--~~~~i~vafSGGKDS~vl-~L~~~~---~~~i~vi~~DTg~~fpeT~--------- 152 (463)
++++.+.....+ .+...++.. ...+++|-||||-||+++ +|++.+ +.+|.++ ++-.++||++
T Consensus 226 ds~k~rvl~i~~-rl~~~i~~~c~~~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLI--NVaF~n~e~~~~~~~PDRk 302 (520)
T KOG0573|consen 226 DSLKDRVLVIPP-RLCANILLRCIHESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLI--NVAFGNPEGSKEQNVPDRK 302 (520)
T ss_pred HHHhhhhhccCh-hHhhhccccccccCcEEEEecCCchHHHHHHHHHhhcCCCCceeEE--EeeccCCCcccccCCccHH
Confidence 345555555554 222222222 124599999999999877 788874 3345544 4444444433
Q ss_pred ---HHHHHHHHHhCC
Q 012452 153 ---RFFDEVEKHFGI 164 (463)
Q Consensus 153 ---~~~~~~~~~~gl 164 (463)
.-++++...|+-
T Consensus 303 tgr~g~~eL~s~~P~ 317 (520)
T KOG0573|consen 303 TGRRGLEELQSLYPK 317 (520)
T ss_pred HHHHHHHHHHHhCCc
Confidence 345556666653
No 317
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=84.61 E-value=3.8 Score=31.84 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=49.4
Q ss_pred EEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEE
Q 012452 374 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF 435 (463)
Q Consensus 374 vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f 435 (463)
.+..|-+..-+-.+.....+.++.+.+.+..+.+=-||+.++ ++++ +.++|-.+||++=.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~-P~lA-e~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQ-PQLA-EEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccC-HhHH-hhCCEEEechhhhc
Confidence 455555666688888888888888887655889999999999 9999 99999999998643
No 318
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=84.17 E-value=4.4 Score=45.39 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=45.9
Q ss_pred HHHHHHcC-CcEEEEechhHHHHHH-HHH-------HH-c--CCC----------------------------eEEEEEe
Q 012452 104 DRALEKFG-NDIAIAFSGAEDVALI-EYA-------HL-T--GRP----------------------------FRVFSLD 143 (463)
Q Consensus 104 ~~~~~~~~-~~i~vafSGGKDS~vl-~L~-------~~-~--~~~----------------------------i~vi~~D 143 (463)
...+++.+ .+++|+.|||-||++. .|+ .+ . +.. +..++.-
T Consensus 340 ~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~mp 419 (700)
T PLN02339 340 WDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYTVYMG 419 (700)
T ss_pred HHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhhcceeEEEECC
Confidence 33344444 5699999999999864 342 22 2 211 3455566
Q ss_pred CCCCcHHHHHHHHHHHHHhCCcEEEE
Q 012452 144 TGRLNPETYRFFDEVEKHFGIRIEYM 169 (463)
Q Consensus 144 Tg~~fpeT~~~~~~~~~~~gl~i~~~ 169 (463)
+-.--++|++-++++++.+|+..+.+
T Consensus 420 ~~~ss~~t~~~A~~la~~lG~~~~~i 445 (700)
T PLN02339 420 SENSSEETRSRAKQLADEIGSSHLDV 445 (700)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 66677899999999999999988665
No 319
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=82.35 E-value=14 Score=30.30 Aligned_cols=75 Identities=15% Similarity=0.105 Sum_probs=49.2
Q ss_pred CCcE-EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCC
Q 012452 371 QEPW-LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 449 (463)
Q Consensus 371 ~k~v-lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~ 449 (463)
.++| ++.|..+. ..|..+...++++++--. ++.+-..+. . ...|++.+..+|+...+.|.| -
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd--kI~~~~~~~--~-----------~~~P~~~i~~~~~~~gIrF~G-i 80 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD--KITLEEDND--D-----------ERKPSFSINRPGEDTGIRFAG-I 80 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC--ceEEEEecC--C-----------CCCCEEEEecCCCcccEEEEe-c
Confidence 4455 55555555 999999999988887553 355532221 1 147999998877433588877 5
Q ss_pred CCHHHHHHHHHHh
Q 012452 450 RDVDSLMAFVDAL 462 (463)
Q Consensus 450 ~~~~~L~~fI~~l 462 (463)
..=.++..||..+
T Consensus 81 P~GhEf~Slilai 93 (94)
T cd02974 81 PMGHEFTSLVLAL 93 (94)
T ss_pred CCchhHHHHHHHh
Confidence 5567788887654
No 320
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=80.72 E-value=9.7 Score=41.02 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=54.0
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 449 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~ 449 (463)
-.++|-+.++.+-|..|..+...++++++--. ++.+-. ... . ...|++.+..+|+...+.|.| -
T Consensus 17 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--~i~~~~---~~~------~----~~~p~~~~~~~~~~~~i~f~g-~ 80 (517)
T PRK15317 17 LERPIELVASLDDSEKSAELKELLEEIASLSD--KITVEE---DSL------D----VRKPSFSITRPGEDTGVRFAG-I 80 (517)
T ss_pred CCCCEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEE---ccC------C----CCCCEEEEEcCCccceEEEEe-c
Confidence 35677666666689999999999999887653 355533 112 1 247999998877655688877 5
Q ss_pred CCHHHHHHHHHHh
Q 012452 450 RDVDSLMAFVDAL 462 (463)
Q Consensus 450 ~~~~~L~~fI~~l 462 (463)
..-.++..||..|
T Consensus 81 P~g~Ef~s~i~~i 93 (517)
T PRK15317 81 PMGHEFTSLVLAL 93 (517)
T ss_pred CccHHHHHHHHHH
Confidence 6667788887764
No 321
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=80.10 E-value=35 Score=28.73 Aligned_cols=108 Identities=10% Similarity=0.043 Sum_probs=75.8
Q ss_pred eeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC-CCeEEEEEEcCCCcHHHH---HHcCCCC-
Q 012452 353 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYA---KQKLQLG- 427 (463)
Q Consensus 353 V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~-~~v~f~~VD~d~~~~~l~---~~~~~I~- 427 (463)
+..|+.+++.+.=. ..-+...+|-|--+--+.-.+|.+.+.++|+.+.+ .++.|+-||-|.. +-+. .+-|+|.
T Consensus 3 lrkl~~~~m~e~we-dd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~F-Pllv~yWektF~IDl 80 (120)
T cd03074 3 LRKLKPENMFETWE-DDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDF-PLLVPYWEKTFGIDL 80 (120)
T ss_pred hhhccHHHHHHhhh-cccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccC-chhhHHHHhhcCccc
Confidence 34566666665543 23467788888888889999999999999999986 5899999999987 5544 1345654
Q ss_pred CCCEEEEEeCCCcCe--eecCC--CCCCHHHHHHHHHHh
Q 012452 428 SFPTILFFPKHSSKP--IKYPS--ERRDVDSLMAFVDAL 462 (463)
Q Consensus 428 ~~PTi~~f~~g~~~~--~~y~g--g~~~~~~L~~fI~~l 462 (463)
.-|.|-+.+-..... ....+ ...++++|..||+.+
T Consensus 81 ~~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 81 FRPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred CCCceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 358888875433222 22222 236789999999864
No 322
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=80.03 E-value=10 Score=28.96 Aligned_cols=70 Identities=11% Similarity=0.227 Sum_probs=44.7
Q ss_pred EEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHH
Q 012452 377 VLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLM 456 (463)
Q Consensus 377 ~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~ 456 (463)
.|+.++|++|++..-.++. ++-.+.+..++......++. +...-..+|++. .+|. .. .+...|.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~-----~~i~~~~~~v~~~~~~~~~~-~~~p~~~vPvL~--~~g~---~l-----~dS~~I~ 64 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEE-----KGIPYELVPVDPEEKRPEFL-KLNPKGKVPVLV--DDGE---VL-----TDSAAII 64 (75)
T ss_dssp EEEETTSHHHHHHHHHHHH-----HTEEEEEEEEBTTSTSHHHH-HHSTTSBSSEEE--ETTE---EE-----ESHHHHH
T ss_pred CCCcCCChHHHHHHHHHHH-----cCCeEEEeccCcccchhHHH-hhcccccceEEE--ECCE---EE-----eCHHHHH
Confidence 4778999999996655443 33124455555544325666 666778999997 4454 22 3557888
Q ss_pred HHHHHh
Q 012452 457 AFVDAL 462 (463)
Q Consensus 457 ~fI~~l 462 (463)
++|++.
T Consensus 65 ~yL~~~ 70 (75)
T PF13417_consen 65 EYLEER 70 (75)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888763
No 323
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=79.13 E-value=12 Score=40.22 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=53.2
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 449 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~ 449 (463)
-.++|-+.++.+-|..|..+...++++++.-. ++.+...+.+ ....|++.++.+|+...+.|.| -
T Consensus 17 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--ki~~~~~~~~------------~~~~p~~~~~~~~~~~~i~f~g-~ 81 (515)
T TIGR03140 17 LENPVTLVLSAGSHEKSKELLELLDEIASLSD--KISLTQNTAD------------TLRKPSFTILRDGADTGIRFAG-I 81 (515)
T ss_pred cCCCEEEEEEeCCCchhHHHHHHHHHHHHhCC--CeEEEEecCC------------cCCCCeEEEecCCcccceEEEe-c
Confidence 35666565555579999999999998887553 4666433322 1346999998777654678877 5
Q ss_pred CCHHHHHHHHHHh
Q 012452 450 RDVDSLMAFVDAL 462 (463)
Q Consensus 450 ~~~~~L~~fI~~l 462 (463)
..-.++..||..|
T Consensus 82 P~g~Ef~s~i~~i 94 (515)
T TIGR03140 82 PGGHEFTSLVLAI 94 (515)
T ss_pred CCcHHHHHHHHHH
Confidence 6667788887764
No 324
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=79.09 E-value=16 Score=27.80 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=40.9
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc-HHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHH
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVD 453 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~-~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~ 453 (463)
+..|+.+.|++|++.+-.+.+. ++.+-.++++... .++. .-....+|++..=..|.. .+- .+..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-------gi~y~~~~~~~~~~~~~~--~~~~~~vP~l~~~~~~~~-~~l-----~eS~ 66 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-------GIPYEVVEVNPVSRKEIK--WSSYKKVPILRVESGGDG-QQL-----VDSS 66 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-------CCceEEEECCchhHHHHH--HhCCCccCEEEECCCCCc-cEE-----EcHH
Confidence 4568889999999987655543 2444444444321 2332 345578999864322111 122 2456
Q ss_pred HHHHHHHH
Q 012452 454 SLMAFVDA 461 (463)
Q Consensus 454 ~L~~fI~~ 461 (463)
.|.+||++
T Consensus 67 ~I~~yL~~ 74 (77)
T cd03040 67 VIISTLKT 74 (77)
T ss_pred HHHHHHHH
Confidence 78888765
No 325
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=78.57 E-value=13 Score=28.58 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=41.5
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRD 451 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~---~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~ 451 (463)
+..|+.++|++|.+..-.+++. ++.+-.++++... .++. +......+|+++. .+|. ..- .+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-------gi~y~~~~v~~~~~~~~~~~-~~~p~~~vP~l~~-~~~~--~~l-----~e 65 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-------ELDVILYPCPKGSPKRDKFL-EKGGKVQVPYLVD-PNTG--VQM-----FE 65 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-------CCcEEEEECCCChHHHHHHH-HhCCCCcccEEEe-CCCC--eEE-----Ec
Confidence 3467778999999877666554 2444445554431 2343 3335578999853 2233 222 24
Q ss_pred HHHHHHHHHH
Q 012452 452 VDSLMAFVDA 461 (463)
Q Consensus 452 ~~~L~~fI~~ 461 (463)
...|.+||++
T Consensus 66 s~~I~~yL~~ 75 (77)
T cd03041 66 SADIVKYLFK 75 (77)
T ss_pred HHHHHHHHHH
Confidence 5678888875
No 326
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=77.92 E-value=16 Score=37.90 Aligned_cols=100 Identities=13% Similarity=0.173 Sum_probs=66.1
Q ss_pred hHHHHHhhcCCCCcEEEEEecCCChhHHHhHH-HH-HH-HHHHhcCCCeEEEEEEcCCCc-HHHHHHcCCCCCCCEEEEE
Q 012452 360 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEG-SY-VE-LADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFF 435 (463)
Q Consensus 360 ~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p-~l-~~-la~~~~~~~v~f~~VD~d~~~-~~l~~~~~~I~~~PTi~~f 435 (463)
++-+.|...+.++.+||.|-+---...+.|.. .| .. +++.+.. .++-++|+..... ..+. .-|.+-.+|+++|+
T Consensus 7 nipeAIa~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~-~fVaIkiqags~aa~qFs-~IYp~v~vPs~ffI 84 (506)
T KOG2507|consen 7 NIPEAIAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSK-YFVAIKIQAGSVAATQFS-AIYPYVSVPSIFFI 84 (506)
T ss_pred chHHHHHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhc-ceEEEEeccCchhhhhhh-hhcccccccceeee
Confidence 44455555567888999999988888887772 33 22 2333333 4666677655431 3455 66788899999999
Q ss_pred eCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 436 PKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 436 ~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
...+. ++....|...+|+|..-|++.
T Consensus 85 g~sGt-pLevitg~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 85 GFSGT-PLEVITGFVTADELASSIEKV 110 (506)
T ss_pred cCCCc-eeEEeeccccHHHHHHHHHHH
Confidence 65554 555554578899998888764
No 327
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=77.76 E-value=13 Score=36.15 Aligned_cols=88 Identities=17% Similarity=0.229 Sum_probs=58.3
Q ss_pred CCCcEEEEEecCCChh-HHHhHHHHHHHHHHhcC-CCe----EEEEEEcCCCc-------------------------HH
Q 012452 370 RQEPWLVVLYAPWCQF-CQAMEGSYVELADKLAG-NGV----KVGKFRADGDQ-------------------------KE 418 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~-C~~~~p~l~~la~~~~~-~~v----~f~~VD~d~~~-------------------------~~ 418 (463)
.++-+|++|.=+.||. |-.....+..+.+++.. .++ .|+.||-+.+. ..
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 5889999999999974 77666666655555544 122 46666653321 45
Q ss_pred HHHHcCCCCCCC-------------EEEEE---eCCCcCeeecCCCCCCHHHHHHHHH
Q 012452 419 YAKQKLQLGSFP-------------TILFF---PKHSSKPIKYPSERRDVDSLMAFVD 460 (463)
Q Consensus 419 l~~~~~~I~~~P-------------Ti~~f---~~g~~~~~~y~gg~~~~~~L~~fI~ 460 (463)
+| ++|.|.--+ |+++| ++|+ .+.|.|-.++.++|.+-|.
T Consensus 218 va-k~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~--Fvd~~GrN~~~~~~~~~I~ 272 (280)
T KOG2792|consen 218 VA-KKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGE--FVDYYGRNYDADELADSIL 272 (280)
T ss_pred HH-HHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcc--eehhhcccCCHHHHHHHHH
Confidence 67 777775332 45555 5555 8888887889998877664
No 328
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=77.69 E-value=7.7 Score=31.29 Aligned_cols=64 Identities=8% Similarity=-0.089 Sum_probs=51.9
Q ss_pred CcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeC
Q 012452 372 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 437 (463)
Q Consensus 372 k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~ 437 (463)
..++=.|.|..-+-++.....+.++.+.+-...+.+=-||+.++ ++++ +.++|-.+||++=...
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~q-P~lA-E~~~IvATPtLIK~~P 66 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKN-PQLA-EEDKILATPTLSKILP 66 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-HhHH-hHCCEEEecHHhhcCC
Confidence 34566677888889999888888887766554688888999999 9999 9999999999874433
No 329
>PRK09301 circadian clock protein KaiB; Provisional
Probab=77.67 E-value=7.7 Score=32.27 Aligned_cols=65 Identities=9% Similarity=-0.045 Sum_probs=53.6
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEe
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 436 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~ 436 (463)
.+..+|=.|.|..-+-.+.....+.++.+.+-...+.+=-||+.++ ++++ +.++|-.+||++=.-
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~q-PelA-E~~~IvATPTLIK~~ 68 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKN-PQLA-EEDKILATPTLAKIL 68 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-HhHH-hHCCeEEecHHhhcC
Confidence 3456777788888899999888898887766554688889999999 9999 999999999977443
No 330
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=77.63 E-value=11 Score=28.21 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=37.0
Q ss_pred EEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHH
Q 012452 377 VLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLM 456 (463)
Q Consensus 377 ~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~ 456 (463)
.|+.++|++|++..-.+... +-.+....+|.+.. .... +...-..+|++. ..+|. . -.+...|.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-----gl~~~~~~~~~~~~-~~~~-~~~~~~~vP~L~-~~~~~---~-----l~es~aI~ 66 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-----NIPVEQIILQNDDE-ATPI-RMIGAKQVPILE-KDDGS---F-----MAESLDIV 66 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-----CCCeEEEECCCCch-HHHH-HhcCCCccCEEE-eCCCe---E-----eehHHHHH
Confidence 57788999999876555543 31233333443322 2233 334456789884 33343 1 12456777
Q ss_pred HHHH
Q 012452 457 AFVD 460 (463)
Q Consensus 457 ~fI~ 460 (463)
+||+
T Consensus 67 ~yL~ 70 (71)
T cd03037 67 AFID 70 (71)
T ss_pred HHHh
Confidence 7775
No 331
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=77.36 E-value=2.9 Score=34.64 Aligned_cols=78 Identities=10% Similarity=0.128 Sum_probs=43.0
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCCCCCCCEEEEEeCCCcCeeecCC----
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPKHSSKPIKYPS---- 447 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~---~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~g---- 447 (463)
+..|+.++|+.|++....|++. ++.|-.+|+.++. .++. +-++-.+.+.--++..... ...-.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~~l~-~~~~~~~~~~~~li~~~~~-~~~~l~~~~~ 71 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-------GIEYEFIDYLKEPPTKEELK-ELLAKLGLGVEDLFNTRGT-PYRKLGLADK 71 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-------CCCcEEEeeccCCCCHHHHH-HHHHhcCCCHHHHHhcCCc-hHHHcCCccc
Confidence 3578899999999987766652 4677777775531 2232 2223333333333433321 111111
Q ss_pred CCCCHHHHHHHHHH
Q 012452 448 ERRDVDSLMAFVDA 461 (463)
Q Consensus 448 g~~~~~~L~~fI~~ 461 (463)
...+.+++.++|.+
T Consensus 72 ~~ls~~e~~~~l~~ 85 (105)
T cd02977 72 DELSDEEALELMAE 85 (105)
T ss_pred cCCCHHHHHHHHHh
Confidence 14677888877754
No 332
>PHA03075 glutaredoxin-like protein; Provisional
Probab=76.96 E-value=3.8 Score=34.72 Aligned_cols=30 Identities=23% Similarity=0.568 Sum_probs=25.9
Q ss_pred CcEEEEEecCCChhHHHhHHHHHHHHHHhc
Q 012452 372 EPWLVVLYAPWCQFCQAMEGSYVELADKLA 401 (463)
Q Consensus 372 k~vlV~FyA~wC~~C~~~~p~l~~la~~~~ 401 (463)
|.++|.|.-|.|+-|......+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999988887777663
No 333
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=72.05 E-value=28 Score=32.39 Aligned_cols=92 Identities=17% Similarity=0.282 Sum_probs=61.5
Q ss_pred CCcEEEEEe-cCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------cHHHHHH
Q 012452 371 QEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAKQ 422 (463)
Q Consensus 371 ~k~vlV~Fy-A~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~---------------------------~~~l~~~ 422 (463)
++-+++.|| ++.-+.|-.....|.++.++++..++.++.+.+|.. +.+++ +
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs-~ 111 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIA-R 111 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHH-H
Confidence 455555566 677788888888888888888877788888876542 15788 8
Q ss_pred cCCCCC------CCEEEEEeCCCc-Ce-eecCCC-CCCHHHHHHHHHHhC
Q 012452 423 KLQLGS------FPTILFFPKHSS-KP-IKYPSE-RRDVDSLMAFVDALR 463 (463)
Q Consensus 423 ~~~I~~------~PTi~~f~~g~~-~~-~~y~gg-~~~~~~L~~fI~~l~ 463 (463)
.|++-. +=.++++++.+. +. ..|..+ .|+.+++.+.|++++
T Consensus 112 ~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 112 AYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred HcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 888753 223455544443 32 222221 499999999998875
No 334
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=71.71 E-value=3.9 Score=27.43 Aligned_cols=21 Identities=14% Similarity=0.404 Sum_probs=19.1
Q ss_pred cCcHHHHHHHHHhCCCCccch
Q 012452 258 NVKGNDIWNFLRTMDVPINSL 278 (463)
Q Consensus 258 dWt~~DVw~yi~~~~lp~npL 278 (463)
.|+.+|+-.||..+||++.+-
T Consensus 3 tWs~~~L~~wL~~~gi~~~~~ 23 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPKS 23 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCCC
Confidence 599999999999999998764
No 335
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=71.49 E-value=17 Score=27.22 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=41.9
Q ss_pred EEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHH
Q 012452 376 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSL 455 (463)
Q Consensus 376 V~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L 455 (463)
..|+.++|+.|+...-.+++. +-.+....+|.....+++. +......+|++. .+|. .- .+...|
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~-~~~p~~~vP~l~--~~~~---~l-----~es~aI 65 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEK-----GVSVEIIDVDPDNPPEDLA-ELNPYGTVPTLV--DRDL---VL-----YESRII 65 (73)
T ss_pred EEEECCCChhHHHHHHHHHHc-----CCccEEEEcCCCCCCHHHH-hhCCCCCCCEEE--ECCE---EE-----EcHHHH
Confidence 467889999999977665543 2123444555544324555 555667899774 3332 22 344577
Q ss_pred HHHHHH
Q 012452 456 MAFVDA 461 (463)
Q Consensus 456 ~~fI~~ 461 (463)
..+|++
T Consensus 66 ~~yL~~ 71 (73)
T cd03059 66 MEYLDE 71 (73)
T ss_pred HHHHHh
Confidence 777764
No 336
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=70.05 E-value=29 Score=34.64 Aligned_cols=56 Identities=14% Similarity=0.288 Sum_probs=39.6
Q ss_pred CcEEEEechhHH-HHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEE
Q 012452 112 NDIAIAFSGAED-VALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM 169 (463)
Q Consensus 112 ~~i~vafSGGKD-S~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~ 169 (463)
+.+++|+|||-| |.+|-.+.+.+-++..+..|.|- .|-.+-+++-+.+.|-+-.++
T Consensus 6 ~~vVLAySGgLDTscil~WLkeqGyeViay~AnvGQ--~edfe~ar~kAlk~Gakk~~~ 62 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQGYEVIAYLANVGQ--KEDFEEARKKALKSGAKKVVV 62 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhcCceEEEeeccccc--hhhHHHHHHhhhhcCceEEEe
Confidence 348899999999 67776777788899999999996 344444555555566654333
No 337
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=68.79 E-value=8.3 Score=28.83 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=33.6
Q ss_pred EEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCC---CcHHHHHHcCCCCCCCEEEE
Q 012452 376 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG---DQKEYAKQKLQLGSFPTILF 434 (463)
Q Consensus 376 V~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~---~~~~l~~~~~~I~~~PTi~~ 434 (463)
..|+.++|++|++..-.+.+..- .+....+|... ...++. +......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l-----~~~~~~v~~~~~~~~~~~~~-~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI-----DVPLVTVDLAAGEQRSPEFL-AKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC-----CceEEEeecccCccCCHHHH-hhCCCCCCCEEEe
Confidence 46788999999998777665421 34445565432 114555 5556678999964
No 338
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=68.44 E-value=19 Score=25.78 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=32.4
Q ss_pred EEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcH-HHHHHcCCCCCCCEEEE
Q 012452 376 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK-EYAKQKLQLGSFPTILF 434 (463)
Q Consensus 376 V~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~-~l~~~~~~I~~~PTi~~ 434 (463)
..|+.++|+.|++..-.++.. +-.+....++.+.... ++. +......+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~~~~~~~~~~~-~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEK-----GLPYELVPVDLGEGEQEEFL-ALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHc-----CCCcEEEEeCCCCCCCHHHH-hcCCCCCCCEEEE
Confidence 357889999999877666654 2123444455433311 244 5566778998763
No 339
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=68.19 E-value=14 Score=35.85 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=37.4
Q ss_pred CCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeC
Q 012452 369 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK 437 (463)
Q Consensus 369 ~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~ 437 (463)
..+|+.+++..+.|||+|....=.+-..-.+|.+ +.+.....+.. + .-..+||++|...
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn--~~l~~~~S~~~--d------~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN--FSLEYHYSDPY--D------NYPNTPTLIFNNY 114 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC--eeeEEeecCcc--c------CCCCCCeEEEecC
Confidence 3789999999999999998766555555555655 42222221211 1 1247899988654
No 340
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=68.04 E-value=6.9 Score=32.87 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=34.1
Q ss_pred EEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc---HHHHHHcCCCCCCCEEEEEeCCC
Q 012452 376 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPKHS 439 (463)
Q Consensus 376 V~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~---~~l~~~~~~I~~~PTi~~f~~g~ 439 (463)
..|+.++|+.|++....|++- ++.|-.+|+..+. .++. .-++..+.|..-++...+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~el~-~~~~~~~~~~~~l~~~~~ 60 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-------GVDYTAIDIVEEPPSKEELK-KWLEKSGLPLKKFFNTSG 60 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------CCceEEecccCCcccHHHHH-HHHHHcCCCHHHHHhcCC
Confidence 468899999999988766652 5777777776541 1222 222333456555554443
No 341
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=66.15 E-value=8.8 Score=33.35 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=24.9
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 415 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~ 415 (463)
+..|+.++|+.|++....|++- ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-------gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-------DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCcEEeeccCC
Confidence 4578899999999977666542 467777777554
No 342
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=64.38 E-value=9.9 Score=32.15 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=25.9
Q ss_pred EEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 012452 376 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 415 (463)
Q Consensus 376 V~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~ 415 (463)
..|+.++|+.|++....|++- ++.|-.+|+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-------GIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-------CCceEEEecCCC
Confidence 468899999999988777762 577888887765
No 343
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=63.77 E-value=48 Score=27.97 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=41.7
Q ss_pred ChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEe
Q 012452 357 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP 436 (463)
Q Consensus 357 t~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~ 436 (463)
-++.+.++++...+-+.++|.=.-+.- .+.+....+.+-....+ ....|.+| +.+. ++|+|+.+||+++-+
T Consensus 9 P~~~L~~l~~~a~~~~~~~V~RG~~~g----~~~~t~~~~~~l~~~~~-~~~~v~Id---P~~F-~~y~I~~VPa~V~~~ 79 (113)
T PF09673_consen 9 PDASLRNLLKQAERAGVVVVFRGFPDG----SFKPTAKAIQELLRKDD-PCPGVQID---PRLF-RQYNITAVPAFVVVK 79 (113)
T ss_pred CHHHHHHHHHHHHhCCcEEEEECCCCC----CHHHHHHHHHHHhhccC-CCcceeEC---hhHH-hhCCceEcCEEEEEc
Confidence 345666666543344444444333322 55665555555444311 11333333 8888 899999999999887
Q ss_pred C
Q 012452 437 K 437 (463)
Q Consensus 437 ~ 437 (463)
+
T Consensus 80 ~ 80 (113)
T PF09673_consen 80 D 80 (113)
T ss_pred C
Confidence 7
No 344
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=63.21 E-value=1.3e+02 Score=29.27 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=45.5
Q ss_pred CCCeeecChhhHHHHHhhcCCCCcEEEEEecCCC-hh-HHHhHHHHHHHHHHhcC---CCeEEEEEEcCCCcHHHHHHc-
Q 012452 350 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWC-QF-CQAMEGSYVELADKLAG---NGVKVGKFRADGDQKEYAKQK- 423 (463)
Q Consensus 350 ~~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC-~~-C~~~~p~l~~la~~~~~---~~v~f~~VD~d~~~~~l~~~~- 423 (463)
.+...+|++.+.+-+-. =+++|-|.+|.+-- +. =..+...+.++-++|+. .++.+-.||-+.+ ++.. ++
T Consensus 6 ~~k~ysLS~~T~~~L~~---L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~-~~~~-~~~ 80 (271)
T PF09822_consen 6 ANKRYSLSDQTKKVLKS---LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDEN-PSEA-EEK 80 (271)
T ss_pred CCCCccCCHHHHHHHHh---CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCC-hHHH-HHH
Confidence 35678888877665544 45677777776541 11 23444445555555532 2799999999776 5555 44
Q ss_pred ---CCCCC
Q 012452 424 ---LQLGS 428 (463)
Q Consensus 424 ---~~I~~ 428 (463)
++|..
T Consensus 81 ~~~~Gi~~ 88 (271)
T PF09822_consen 81 AKEYGIQP 88 (271)
T ss_pred HHhcCCCc
Confidence 77765
No 345
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.95 E-value=12 Score=29.16 Aligned_cols=55 Identities=11% Similarity=0.100 Sum_probs=35.3
Q ss_pred EEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc-------------H--HHHHHcCCCCCCCEEEEEeCCC
Q 012452 376 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-------------K--EYAKQKLQLGSFPTILFFPKHS 439 (463)
Q Consensus 376 V~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~-------------~--~l~~~~~~I~~~PTi~~f~~g~ 439 (463)
++|+|.-||.|..+..+++++. +.+=.|++...- + +-. +.++--++|.++ ..+|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~-------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~v-k~~gyiGIPall-~~d~~ 74 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN-------VDYDFVEITESMANLKRFLHLRDSRPEFDEV-KSNGYIGIPALL-TDDGK 74 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC-------CCceeeehhhhhhhHHHHHhhhccchhHHhh-hhcCcccceEEE-eCCCc
Confidence 6899999999988887777663 444445543320 1 122 345666899986 45555
No 346
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=59.34 E-value=17 Score=33.24 Aligned_cols=33 Identities=15% Similarity=0.459 Sum_probs=25.1
Q ss_pred EEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEE
Q 012452 377 VLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKF 410 (463)
Q Consensus 377 ~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~V 410 (463)
+|.-|.|+.|-.++|.+.++..++++ .+.|-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~-~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN-KIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T-TEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC-cEEEEEE
Confidence 58899999999999999999999988 4544433
No 347
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=58.94 E-value=30 Score=29.08 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=39.8
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 415 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~ 415 (463)
+++++||.=-|+-|+.-. ....|++|.++|++.++.++.+-|++.
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqF 64 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQF 64 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTT
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHh
Confidence 689999999999999998 666999999999876899999998764
No 348
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=58.94 E-value=13 Score=30.94 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=24.6
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 415 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~ 415 (463)
+..|+.|+|+.|++....|++- ++.|-.+|+.++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-------~i~~~~~di~~~ 34 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-------GVAYTFHDYRKD 34 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-------CCCeEEEecccC
Confidence 3578899999999977666642 466667776554
No 349
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=58.36 E-value=52 Score=26.03 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=34.3
Q ss_pred EEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEE
Q 012452 374 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 434 (463)
Q Consensus 374 vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~ 434 (463)
.+..|+.+.|++|+...-.+... +-.+.+..+|......++. +......+|++..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~-----gl~~~~~~v~~~~~~~~~~-~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAK-----NIPHEVININLKDKPDWFL-EKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHc-----CCCCeEEEeCCCCCcHHHH-hhCCCCCcCEEEE
Confidence 35557788899999876555543 3234555666544313455 5555678999973
No 350
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=56.65 E-value=19 Score=30.33 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=24.9
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 415 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~ 415 (463)
+..|+.++|+.|++....|++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCceEEEecCCC
Confidence 4568889999999987777652 466777776554
No 351
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=56.64 E-value=37 Score=33.74 Aligned_cols=90 Identities=9% Similarity=0.126 Sum_probs=58.5
Q ss_pred CCCCcEEEEEecC-----CChhHHHhHHHHHHHHHHhcC-----CCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCC
Q 012452 369 HRQEPWLVVLYAP-----WCQFCQAMEGSYVELADKLAG-----NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH 438 (463)
Q Consensus 369 ~~~k~vlV~FyA~-----wC~~C~~~~p~l~~la~~~~~-----~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g 438 (463)
..+|.|.+..-.. ...+-+++....+++++.|.+ ++++|+.+|-.+. .... .+.--+.|++++|...
T Consensus 248 ~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~-~nqi--lM~als~P~l~i~Nts 324 (468)
T KOG4277|consen 248 ASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDL-ANQI--LMAALSEPHLFIFNTS 324 (468)
T ss_pred cCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHH-HHHH--HHHhhcCCeEEEEecC
Confidence 4677776665543 345678888899999998876 3789999886543 1111 1223478999999766
Q ss_pred CcCeee--cCCCCCCHHHHHHHHHH
Q 012452 439 SSKPIK--YPSERRDVDSLMAFVDA 461 (463)
Q Consensus 439 ~~~~~~--y~gg~~~~~~L~~fI~~ 461 (463)
..+..- .....++.++|.+||+.
T Consensus 325 nqeYfLse~d~qikniedilqFien 349 (468)
T KOG4277|consen 325 NQEYFLSEDDPQIKNIEDILQFIEN 349 (468)
T ss_pred chheeeccCChhhhhHHHHHHHHhc
Confidence 532221 11224678889999875
No 352
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=56.37 E-value=15 Score=32.16 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=27.8
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHH
Q 012452 417 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 417 ~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~ 461 (463)
...+ ++++|.++||+++ +|+ . +.+ ..+.++|.++|++
T Consensus 126 ~~~~-~~~~i~~tPt~~i--nG~--~--~~~-~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 126 SQLA-RQLGITGTPTFFI--NGK--Y--VVG-PYTIEELKELIDK 162 (162)
T ss_dssp HHHH-HHHT-SSSSEEEE--TTC--E--EET-TTSHHHHHHHHHH
T ss_pred HHHH-HHcCCccccEEEE--CCE--E--eCC-CCCHHHHHHHHcC
Confidence 3556 6889999999987 676 3 243 6899999999975
No 353
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=54.84 E-value=46 Score=30.22 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=45.9
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCC
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG 414 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~ 414 (463)
.+..++++.+.--.- +++.+||.=-|+.|+.=..--..|..|.++|++.++.++.+-|..
T Consensus 18 ~~~d~~G~~v~l~~y---rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQ 77 (171)
T KOG1651|consen 18 SAKDLDGEYVSLSQY---RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQ 77 (171)
T ss_pred EEecCCCCCccHHHh---CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEecccc
Confidence 455555543322212 689999999999999998666699999999988789999999875
No 354
>PRK12559 transcriptional regulator Spx; Provisional
Probab=54.73 E-value=20 Score=31.21 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=23.7
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 415 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~ 415 (463)
+..|+.++|+.|++....|++- ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCeEEEEeeCC
Confidence 5678899999999977655542 466666665443
No 355
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=54.58 E-value=30 Score=31.49 Aligned_cols=45 Identities=18% Similarity=0.246 Sum_probs=35.2
Q ss_pred CCCcEEEEEecCCC-hhHHHhHHHHHHHHHHhcC--CCeEEEEEEcCC
Q 012452 370 RQEPWLVVLYAPWC-QFCQAMEGSYVELADKLAG--NGVKVGKFRADG 414 (463)
Q Consensus 370 ~~k~vlV~FyA~wC-~~C~~~~p~l~~la~~~~~--~~v~f~~VD~d~ 414 (463)
.++++||.|.=+.| ..|-.+...+.++.+++.. .++.++.|.+|-
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 68999999999999 6798888888888887764 367777777764
No 356
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=54.34 E-value=6.6 Score=31.34 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=44.7
Q ss_pred EecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEE
Q 012452 378 LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 433 (463)
Q Consensus 378 FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~ 433 (463)
|-+..-+........+..+.+.+-+..+.+--||+.++ ++++ +.++|-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~-P~lA-e~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQ-PELA-EEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTS-HSHH-TTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccC-HhHH-hHCCeeecceEe
Confidence 44555566777888888888886665899999999999 9999 999999999986
No 357
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=52.31 E-value=29 Score=32.69 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=34.0
Q ss_pred CCCcEEEEEecCCCh-hHHHhHHHHHHHHHHhc-C--CCe--EEEEEEcCCC
Q 012452 370 RQEPWLVVLYAPWCQ-FCQAMEGSYVELADKLA-G--NGV--KVGKFRADGD 415 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~-~C~~~~p~l~~la~~~~-~--~~v--~f~~VD~d~~ 415 (463)
.+++++|+|.=+.|+ .|-.+...+..+.+++. . .++ .|+.||=+.+
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerD 117 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERD 117 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCC
Confidence 689999999988885 69999988988888887 3 344 4455554433
No 358
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=52.14 E-value=18 Score=27.21 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=32.9
Q ss_pred EEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC---cHHHHHHcCCCCCCCEEE
Q 012452 376 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---QKEYAKQKLQLGSFPTIL 433 (463)
Q Consensus 376 V~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~---~~~l~~~~~~I~~~PTi~ 433 (463)
..|+.+.|+.|+...-.+++. +-.+....+|.... .+++. +......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-----gi~~e~~~i~~~~~~~~~~~~~-~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL-----GLELNLKEVNLMKGEHLKPEFL-KLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc-----CCCCEEEEecCccCCcCCHHHH-hhCcCCCCCEEE
Confidence 468899999999866555543 21344555554322 14555 555567899995
No 359
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=49.76 E-value=35 Score=30.05 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=45.7
Q ss_pred CcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCC----CCCEEEEEeCCCcCeeecCC
Q 012452 372 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG----SFPTILFFPKHSSKPIKYPS 447 (463)
Q Consensus 372 k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~----~~PTi~~f~~g~~~~~~y~g 447 (463)
..-++.|++|.|+-|..-...++. +++.+-.+..++. ..+- ++|+|. +==|.+ -+|. . ..|
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~-------~Gf~Vk~~~~~d~-~alK-~~~gIp~e~~SCHT~V--I~Gy--~--vEG 89 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKA-------NGFEVKVVETDDF-LALK-RRLGIPYEMQSCHTAV--INGY--Y--VEG 89 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHh-------CCcEEEEeecCcH-HHHH-HhcCCChhhccccEEE--EcCE--E--Eec
Confidence 346788999999999876555541 2577777777766 4444 778774 223333 2333 1 222
Q ss_pred CCCCHHHHHHHHHH
Q 012452 448 ERRDVDSLMAFVDA 461 (463)
Q Consensus 448 g~~~~~~L~~fI~~ 461 (463)
-...+.|..|+++
T Consensus 90 -HVPa~aI~~ll~~ 102 (149)
T COG3019 90 -HVPAEAIARLLAE 102 (149)
T ss_pred -cCCHHHHHHHHhC
Confidence 5667778777753
No 360
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=48.90 E-value=30 Score=32.32 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=31.7
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCCcCeeecCCC--CCCHHHHHHHHHH
Q 012452 417 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE--RRDVDSLMAFVDA 461 (463)
Q Consensus 417 ~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg--~~~~~~L~~fI~~ 461 (463)
..++ +++++.+|||+++-.+|+ ......| ..+.+++..++.+
T Consensus 164 r~l~-~rlg~~GfPTl~le~ng~--~~~l~~g~y~~~~~~~~arl~~ 207 (212)
T COG3531 164 RRLM-QRLGAAGFPTLALERNGT--MYVLGTGAYFGSPDAWLARLAQ 207 (212)
T ss_pred HHHH-HHhccCCCCeeeeeeCCc--eEeccCCcccCCcHHHHHHHHH
Confidence 4677 899999999999999998 4444333 4567888777764
No 361
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=48.52 E-value=51 Score=29.69 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=32.4
Q ss_pred EEEEEeCCCCc-HHHHHHHHHHHHHhCCcEEEEcCChHHHHHH
Q 012452 138 RVFSLDTGRLN-PETYRFFDEVEKHFGIRIEYMFPDAVEVQAL 179 (463)
Q Consensus 138 ~vi~~DTg~~f-peT~~~~~~~~~~~gl~i~~~~p~~~~~~~~ 179 (463)
.|+++|||... ++-.+.++++++.++++++++.-+..-+..+
T Consensus 120 ~~~~Idtg~~~~~~~~~~~~~~a~~~~l~~~~~~g~l~~l~~l 162 (166)
T PF07796_consen 120 RVVLIDTGVYDEEDFEEKVREFAEFLGLPIEEIPGDLDLLEKL 162 (166)
T ss_pred eEEEEecccccchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHH
Confidence 58999999754 4568899999999999999886555444443
No 362
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=48.08 E-value=36 Score=32.39 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=25.5
Q ss_pred CCcEEEEEecCCChhHHHhHHHHHHHHHHhcC
Q 012452 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAG 402 (463)
Q Consensus 371 ~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~ 402 (463)
.+..++.|+...|++|+...|.+.+......+
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 37889999999999998888888885555544
No 363
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=47.99 E-value=1.6e+02 Score=31.09 Aligned_cols=83 Identities=17% Similarity=0.330 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC--Ch
Q 012452 97 ASPLEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP--DA 173 (463)
Q Consensus 97 ~~a~eil~~~~~~~-~~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p--~~ 173 (463)
....+.++..+..+ +..-+++|++|-....+-|.....+.-.|+. +...|..|..+.+....++|+++..+.. +.
T Consensus 60 nPtv~~lE~~la~leg~~~av~~~SG~aAi~~al~all~~GD~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~ 137 (432)
T PRK06702 60 NPTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNICSSGDHLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTA 137 (432)
T ss_pred CcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhcCCCCEEEE--CCCchHHHHHHHHHHHHHCCCEEEEECCCCCH
Confidence 35677788888765 4456788998888644322222333334544 4567899999999988899999988765 33
Q ss_pred HHHHHHHH
Q 012452 174 VEVQALVR 181 (463)
Q Consensus 174 ~~~~~~~~ 181 (463)
..+...+.
T Consensus 138 ~~l~~~I~ 145 (432)
T PRK06702 138 DEIVALAN 145 (432)
T ss_pred HHHHHhCC
Confidence 34444443
No 364
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=47.92 E-value=1.9e+02 Score=25.32 Aligned_cols=90 Identities=11% Similarity=0.128 Sum_probs=57.9
Q ss_pred CCCcEEEEEecCCChhHHHhHHHH---HHHHHHhcCCCeEEEEEEcCCCc-H----------------HHHHHcCCCCCC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ-K----------------EYAKQKLQLGSF 429 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l---~~la~~~~~~~v~f~~VD~d~~~-~----------------~l~~~~~~I~~~ 429 (463)
+.|+.+|+...|--..+..+-... +.+.+-+++ ++.+-.-|+...+ . ... +.++...+
T Consensus 20 e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~-nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~-~~~~~~~f 97 (136)
T cd02990 20 DRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ-NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTI-RNIKTDQL 97 (136)
T ss_pred hcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc-CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHH-HhcCcCCC
Confidence 578999999998764333333222 345555555 7888888887641 1 134 56789999
Q ss_pred CEEEEEeCCCc--CeeecCCCCCCHHHHHHHHHH
Q 012452 430 PTILFFPKHSS--KPIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 430 PTi~~f~~g~~--~~~~y~gg~~~~~~L~~fI~~ 461 (463)
|.+.++-.... ..+..-.|..++++|..-+.+
T Consensus 98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~ 131 (136)
T cd02990 98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIE 131 (136)
T ss_pred CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHH
Confidence 99998854332 233333347899988876654
No 365
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.39 E-value=34 Score=32.70 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=30.0
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 417 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 417 ~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
...+ ++++|+++||++| +++ +...| ..+.+.|..-|+++
T Consensus 174 ~~~A-~e~gI~gVP~fv~--d~~---~~V~G-aq~~~v~~~al~~~ 212 (225)
T COG2761 174 EAAA-QEMGIRGVPTFVF--DGK---YAVSG-AQPYDVLEDALRQL 212 (225)
T ss_pred HHHH-HHCCCccCceEEE--cCc---EeecC-CCCHHHHHHHHHHH
Confidence 3456 7899999999998 444 56666 68899888888764
No 366
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=45.55 E-value=33 Score=31.00 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=27.5
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHH
Q 012452 417 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 460 (463)
Q Consensus 417 ~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~ 460 (463)
...+ .+++|.++||+++ +|+ ..+.| ....+.|.+.|+
T Consensus 157 ~~~a-~~~gv~GvP~~vv--~g~---~~~~G-~~~~~~l~~~l~ 193 (193)
T PF01323_consen 157 TAEA-RQLGVFGVPTFVV--NGK---YRFFG-ADRLDELEDALQ 193 (193)
T ss_dssp HHHH-HHTTCSSSSEEEE--TTT---EEEES-CSSHHHHHHHH-
T ss_pred HHHH-HHcCCcccCEEEE--CCE---EEEEC-CCCHHHHHHHhC
Confidence 4566 7899999999998 555 44555 578888887764
No 367
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=45.21 E-value=62 Score=28.69 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=20.8
Q ss_pred EEEechhHHHH---HHHHHHHcC-CCeEEEEEeCCCCcHHH
Q 012452 115 AIAFSGAEDVA---LIEYAHLTG-RPFRVFSLDTGRLNPET 151 (463)
Q Consensus 115 ~vafSGGKDS~---vl~L~~~~~-~~i~vi~~DTg~~fpeT 151 (463)
.|+||||+ .. +..|+.... ..+. +.++||..+++.
T Consensus 64 gVt~SGGE-l~~~~l~~ll~~lk~~Gl~-i~l~Tg~~~~~~ 102 (147)
T TIGR02826 64 CVLFLGGE-WNREALLSLLKIFKEKGLK-TCLYTGLEPKDI 102 (147)
T ss_pred EEEEechh-cCHHHHHHHHHHHHHCCCC-EEEECCCCCHHH
Confidence 58999999 31 223443321 1233 468899888774
No 368
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=45.04 E-value=17 Score=33.19 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=15.6
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCCc-CeeecCCCCCCHHH
Q 012452 417 KEYAKQKLQLGSFPTILFFPKHSS-KPIKYPSERRDVDS 454 (463)
Q Consensus 417 ~~l~~~~~~I~~~PTi~~f~~g~~-~~~~y~gg~~~~~~ 454 (463)
..++ ++++|+++||+++|..... ..+...| ..+.+.
T Consensus 137 ~~la-~~m~I~~~Ptlvi~~~~~~~~g~~i~g-~~~~~~ 173 (176)
T PF13743_consen 137 QQLA-REMGITGFPTLVIFNENNEEYGILIEG-YYSYEV 173 (176)
T ss_dssp HHHH-HHTT-SSSSEEEEE--------------------
T ss_pred HHHH-HHcCCCCCCEEEEEecccccccccccc-cccccc
Confidence 5788 8999999999999983222 2444444 344433
No 369
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=44.77 E-value=38 Score=30.57 Aligned_cols=39 Identities=10% Similarity=0.222 Sum_probs=30.8
Q ss_pred EEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEc
Q 012452 374 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA 412 (463)
Q Consensus 374 vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~ 412 (463)
.|.+||..-||+|-...+.+.++.+.+.+-.|.+.-+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 377899999999999999999999999552444444543
No 370
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=44.43 E-value=66 Score=30.63 Aligned_cols=90 Identities=16% Similarity=0.226 Sum_probs=61.9
Q ss_pred HHHHHHHHcC--CCeE-E---EEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH---------HHHHHHhcCCCCCC
Q 012452 125 ALIEYAHLTG--RPFR-V---FSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE---------VQALVRSKGLFSFY 189 (463)
Q Consensus 125 ~vl~L~~~~~--~~i~-v---i~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~---------~~~~~~~~g~~~~~ 189 (463)
-+++|.+..+ ++.. + -|+|-|+.--||.-++--+..+|.-+|..++-.... +.+...++|-
T Consensus 60 DL~eLFrtgG~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGn---- 135 (306)
T KOG0373|consen 60 DLLELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGN---- 135 (306)
T ss_pred HHHHHHHhcCCCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCC----
Confidence 4566666532 2222 2 278999999999999999999999999887654332 2222333432
Q ss_pred ccchhhhhhchhhhHHHHHHccCceEEEe
Q 012452 190 EDGHQECCRVRKVRPLRRALKGLRAWITG 218 (463)
Q Consensus 190 ~~~~~~Cc~~~Kv~Pl~r~l~~~~~~itG 218 (463)
.+..++||.+.-..++...+.+.-..+-|
T Consensus 136 an~wkycckVFD~LtlaAiID~~vLCVHG 164 (306)
T KOG0373|consen 136 ANVWKYCCKVFDFLTLAAIIDEKVLCVHG 164 (306)
T ss_pred chHHHHHHHHHhhhhHHHHhcCcEEEEcC
Confidence 23568999999999999888876666655
No 371
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=44.18 E-value=99 Score=29.24 Aligned_cols=64 Identities=23% Similarity=0.316 Sum_probs=39.9
Q ss_pred CChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHH
Q 012452 382 WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 382 wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~ 461 (463)
.|++||.+.-.+. .++..+.+-.||.... ++-.++-..-...|-+. |.. + ...+.+.|..||++
T Consensus 20 dcpf~qr~~m~L~-----~k~~~f~vttVd~~~k-p~~f~~~sp~~~~P~l~-~d~-~--------~~tDs~~Ie~~Lee 83 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE-----LKGVPFKVTTVDLSRK-PEWFLDISPGGKPPVLK-FDE-K--------WVTDSDKIEEFLEE 83 (221)
T ss_pred CChhHHHHHHHHH-----HcCCCceEEEeecCCC-cHHHHhhCCCCCCCeEE-eCC-c--------eeccHHHHHHHHHH
Confidence 5999999877766 2333578889999887 55441334445556544 332 2 13566677777764
No 372
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.17 E-value=58 Score=27.06 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=42.1
Q ss_pred hhHHHHHhhcCCCCcEEEEEe---cCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCC-CCCCCEE-E
Q 012452 359 TGMENLARLDHRQEPWLVVLY---APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQ-LGSFPTI-L 433 (463)
Q Consensus 359 ~~f~~~i~~~~~~k~vlV~Fy---A~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~-I~~~PTi-~ 433 (463)
+-+++.++ .++.+|.+=. .|-|+++.+....+..+. -+.|+.||+=.+ +++. +.+. ....||+ -
T Consensus 6 ~~I~~~i~---~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g------~v~~~~vnVL~d-~eiR-~~lk~~s~WPT~PQ 74 (105)
T COG0278 6 DRIQKQIK---ENPVVLFMKGTPEFPQCGFSAQAVQILSACG------VVDFAYVDVLQD-PEIR-QGLKEYSNWPTFPQ 74 (105)
T ss_pred HHHHHHhh---cCceEEEecCCCCCCCCCccHHHHHHHHHcC------CcceeEEeeccC-HHHH-hccHhhcCCCCCce
Confidence 34455553 4444443333 467888877666665431 168999999888 7877 5543 3455665 3
Q ss_pred EEeCCC
Q 012452 434 FFPKHS 439 (463)
Q Consensus 434 ~f~~g~ 439 (463)
+|-+|.
T Consensus 75 Lyi~GE 80 (105)
T COG0278 75 LYVNGE 80 (105)
T ss_pred eeECCE
Confidence 456666
No 373
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=43.59 E-value=20 Score=29.83 Aligned_cols=25 Identities=4% Similarity=0.231 Sum_probs=23.1
Q ss_pred EEEeCccCcHHHHHHHHHhCCCCcc
Q 012452 252 KWNPVANVKGNDIWNFLRTMDVPIN 276 (463)
Q Consensus 252 k~~PI~dWt~~DVw~yi~~~~lp~n 276 (463)
|+.||+.-++.||-.|...+|+|+.
T Consensus 3 rIRPL~~v~E~ei~~ya~~~~lp~~ 27 (104)
T TIGR00269 3 RIKPLRYIPEKEVVLYAFLNELKVH 27 (104)
T ss_pred cccccccCCHHHHHHHHHHcCCCcC
Confidence 6899999999999999999999864
No 374
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=42.94 E-value=97 Score=26.97 Aligned_cols=22 Identities=5% Similarity=0.294 Sum_probs=19.9
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCC
Q 012452 417 KEYAKQKLQLGSFPTILFFPKHS 439 (463)
Q Consensus 417 ~~l~~~~~~I~~~PTi~~f~~g~ 439 (463)
+.+. ++|+|+.+|++++.+++.
T Consensus 61 P~lF-~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 61 PQWF-KQFDITAVPAFVVVKDGL 82 (130)
T ss_pred hHHH-hhcCceEcCEEEEECCCC
Confidence 8889 999999999999998774
No 375
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=42.56 E-value=41 Score=32.27 Aligned_cols=47 Identities=19% Similarity=0.329 Sum_probs=38.7
Q ss_pred CCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC---CCeEEEEEEcCCC
Q 012452 369 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG---NGVKVGKFRADGD 415 (463)
Q Consensus 369 ~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~---~~v~f~~VD~d~~ 415 (463)
..+..+||-+-..+|.+|..-...|+.|..++.. .+|.|+.||--..
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 3578888888888999999999999999888765 4799999986543
No 376
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=42.31 E-value=42 Score=29.17 Aligned_cols=34 Identities=6% Similarity=0.130 Sum_probs=23.5
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD 415 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~ 415 (463)
+..|+.++|+.|++....|++ .++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA-------HQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------cCCCeEEEECCCC
Confidence 456788999999997655543 2466777776543
No 377
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=40.16 E-value=36 Score=29.20 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=26.3
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHH
Q 012452 417 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 460 (463)
Q Consensus 417 ~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~ 460 (463)
.+++ .+++|.++||+++ +|+ .+.| ..+.+.|.+.|+
T Consensus 119 ~~~~-~~~gi~gtPt~~v--~g~----~~~G-~~~~~~l~~~i~ 154 (154)
T cd03023 119 RQLA-RALGITGTPAFII--GDT----VIPG-AVPADTLKEAID 154 (154)
T ss_pred HHHH-HHcCCCcCCeEEE--CCE----EecC-CCCHHHHHHHhC
Confidence 4667 7899999999876 343 3455 688888887763
No 378
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=39.51 E-value=37 Score=30.77 Aligned_cols=28 Identities=25% Similarity=0.590 Sum_probs=25.1
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAG 402 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~ 402 (463)
|.+|+-+.||.|-...+.++++.+.+.+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 6688899999999999999999999843
No 379
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=39.48 E-value=1.7e+02 Score=23.63 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=40.4
Q ss_pred cCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHH
Q 012452 380 APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 380 A~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI 459 (463)
...|++|++..=.+.+. +-.+.+..||......++. +..-...+|++. .+|. +-+ +...|.++|
T Consensus 19 ~g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~~p~~~~-~~nP~g~vPvL~--~~~~---~i~-----eS~~I~eYL 82 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK-----GVVFNVTTVDMKRKPEDLK-DLAPGTQPPFLL--YNGE---VKT-----DNNKIEEFL 82 (91)
T ss_pred CCCChhHHHHHHHHHHC-----CCceEEEEeCCCCCCHHHH-HhCCCCCCCEEE--ECCE---Eec-----CHHHHHHHH
Confidence 35799999976555543 3235556666665424555 555567899765 3332 333 446788888
Q ss_pred HHh
Q 012452 460 DAL 462 (463)
Q Consensus 460 ~~l 462 (463)
++.
T Consensus 83 de~ 85 (91)
T cd03061 83 EET 85 (91)
T ss_pred HHH
Confidence 763
No 380
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=38.11 E-value=2.5e+02 Score=29.35 Aligned_cols=82 Identities=22% Similarity=0.361 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHcC-CcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChH-
Q 012452 97 ASPLEIMDRALEKFG-NDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAV- 174 (463)
Q Consensus 97 ~~a~eil~~~~~~~~-~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~- 174 (463)
....+.+++++.... ..-+++||.|--+.-.-+..-....-.|+..+. .|-.|+.+.+.+.+++|+++..+-|...
T Consensus 62 nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~--~YG~t~~~~~~~l~~~gi~~~~~d~~~~~ 139 (396)
T COG0626 62 NPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDD--LYGGTYRLFEKILQKFGVEVTFVDPGDDE 139 (396)
T ss_pred CccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCC--ccchHHHHHHHHHHhcCeEEEEECCCChH
Confidence 345555666655543 446788886655322211222222234444444 5899999999999999999998877654
Q ss_pred HHHHHH
Q 012452 175 EVQALV 180 (463)
Q Consensus 175 ~~~~~~ 180 (463)
..++.+
T Consensus 140 ~~~~~~ 145 (396)
T COG0626 140 ALEAAI 145 (396)
T ss_pred HHHHHh
Confidence 344333
No 381
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=38.06 E-value=99 Score=30.61 Aligned_cols=60 Identities=13% Similarity=0.012 Sum_probs=41.7
Q ss_pred EEEEechhHHHHHHHHHHHcCCC-eEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 012452 114 IAIAFSGAEDVALIEYAHLTGRP-FRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE 175 (463)
Q Consensus 114 i~vafSGGKDS~vl~L~~~~~~~-i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~ 175 (463)
|+=-+|.||-.+.+|++..+..+ -.++|+||..-|+.. +++++....--++.+..|...+
T Consensus 65 iyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~--r~~~l~~~~~d~l~v~~~~~~e 125 (279)
T COG0468 65 IYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPE--RAKQLGVDLLDNLLVSQPDTGE 125 (279)
T ss_pred EecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHH--HHHHHHHhhhcceeEecCCCHH
Confidence 44457889999999988875443 389999999866553 4555665533367777887654
No 382
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=37.36 E-value=90 Score=30.31 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=33.9
Q ss_pred EEec-hhHHHHHHHHHHHc-------CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC
Q 012452 116 IAFS-GAEDVALIEYAHLT-------GRPFRVFSLDTGRLNPETYRFFDEVEKHFGI 164 (463)
Q Consensus 116 vafS-GGKDS~vl~L~~~~-------~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl 164 (463)
++-| -||-...++|+..+ +..-.|+|+||...|+- +-+.++.+++++
T Consensus 44 ~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~--~Rl~~i~~~~~~ 98 (256)
T PF08423_consen 44 VGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSP--ERLQQIAERFGL 98 (256)
T ss_dssp EESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-H--HHHHHHHHHTTS
T ss_pred EEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCH--HHHHHHhhcccc
Confidence 4555 78999998888764 34678999999999874 445566777764
No 383
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=37.31 E-value=1.2e+02 Score=31.13 Aligned_cols=81 Identities=10% Similarity=0.172 Sum_probs=59.1
Q ss_pred CCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCC
Q 012452 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER 449 (463)
Q Consensus 370 ~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~ 449 (463)
.+..-+=-|++-.|..|-..-..++-++--.+ ++.-..||-.-. ++-. +.-+|.++||++ -+|+ .|..|.
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp--~I~H~~IdGa~F-q~Ev-ear~IMaVPtvf--lnGe----~fg~GR 184 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNP--RIKHTAIDGALF-QDEV-EARNIMAVPTVF--LNGE----EFGQGR 184 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCC--CceeEEecchhh-HhHH-HhccceecceEE--Ecch----hhcccc
Confidence 46677778888899999888877776654433 588889987766 5555 567899999985 5665 234457
Q ss_pred CCHHHHHHHHH
Q 012452 450 RDVDSLMAFVD 460 (463)
Q Consensus 450 ~~~~~L~~fI~ 460 (463)
++.++|..-|.
T Consensus 185 mtleeilaki~ 195 (520)
T COG3634 185 MTLEEILAKID 195 (520)
T ss_pred eeHHHHHHHhc
Confidence 88888877654
No 384
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=36.32 E-value=2.6e+02 Score=23.58 Aligned_cols=86 Identities=20% Similarity=0.247 Sum_probs=50.5
Q ss_pred EEEEEe-cCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCc-----------HHHHHHcCCCC--CCCEEEEEeCCC
Q 012452 374 WLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-----------KEYAKQKLQLG--SFPTILFFPKHS 439 (463)
Q Consensus 374 vlV~Fy-A~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~-----------~~l~~~~~~I~--~~PTi~~f~~g~ 439 (463)
+||.|- ++.-+.-+.....|.+-...+...++.++.+--+... ..+. ++|++. ++-.+++=++|+
T Consensus 12 ~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr-~~l~~~~~~f~~vLiGKDG~ 90 (118)
T PF13778_consen 12 LLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALR-KRLRIPPGGFTVVLIGKDGG 90 (118)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHH-HHhCCCCCceEEEEEeCCCc
Confidence 344343 3345556666667776555566556777666322221 2667 788864 333444446666
Q ss_pred cCeeecCCCCCCHHHHHHHHHHh
Q 012452 440 SKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 440 ~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
. -..+. ...+.++|.+.|+++
T Consensus 91 v-K~r~~-~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 91 V-KLRWP-EPIDPEELFDTIDAM 111 (118)
T ss_pred E-EEecC-CCCCHHHHHHHHhCC
Confidence 3 33344 478999999999864
No 385
>PRK09028 cystathionine beta-lyase; Provisional
Probab=34.83 E-value=3e+02 Score=28.60 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=42.5
Q ss_pred HHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCCh
Q 012452 100 LEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDA 173 (463)
Q Consensus 100 ~eil~~~~~~~-~~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~ 173 (463)
.+.++..+..+ +..-++.++||.....+-+.....+.-.|+..|.. |+.|+.++....+++|+++..+.+..
T Consensus 63 ~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~--Y~~t~~l~~~~l~~~Gi~v~~v~~~~ 135 (394)
T PRK09028 63 HFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSC--YEPTRDLCDKILKGFGIETTYYDPMI 135 (394)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCC--cHHHHHHHHHhhhhcceEEEEECCCC
Confidence 34555555443 22234577778775432111112332345655654 79999988888888999988776543
No 386
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=34.00 E-value=5.4e+02 Score=26.44 Aligned_cols=100 Identities=18% Similarity=0.245 Sum_probs=62.0
Q ss_pred CCeeecChh-hHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCC
Q 012452 351 QNLVTLNRT-GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 429 (463)
Q Consensus 351 ~~V~~lt~~-~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~ 429 (463)
.+|..++.+ +++.+-. . ...+-||-|+.+--+. -...|+++|+.+.. -|.|..+= + +.++ ++++++ .
T Consensus 146 dPVeiIn~~~e~~~Fe~-i-ed~~klIGyFk~~~s~---~yk~FeeAAe~F~p-~IkFfAtf---d-~~vA-k~L~lK-~ 213 (383)
T PF01216_consen 146 DPVEIINNKHELKAFER-I-EDDIKLIGYFKSEDSE---HYKEFEEAAEHFQP-YIKFFATF---D-KKVA-KKLGLK-L 213 (383)
T ss_dssp SSEEEE-SHHHHHHHHH----SS-EEEEE-SSTTSH---HHHHHHHHHHHCTT-TSEEEEE----S-HHHH-HHHT-S-T
T ss_pred cchhhhcChhhhhhhhh-c-ccceeEEEEeCCCCcH---HHHHHHHHHHhhcC-ceeEEEEe---c-chhh-hhcCcc-c
Confidence 457666543 3333332 1 2357777777664222 23367888999977 67776532 3 8889 899996 7
Q ss_pred CEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 430 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 430 PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
=.+-||..=...++...+...+.++|.+||++.
T Consensus 214 nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h 246 (383)
T PF01216_consen 214 NEVDFYEPFMDEPITIPGKPYTEEELVEFIEEH 246 (383)
T ss_dssp T-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT
T ss_pred cceeeeccccCCCccCCCCCCCHHHHHHHHHHh
Confidence 788899776666899988788999999999875
No 387
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=33.58 E-value=3.5e+02 Score=27.81 Aligned_cols=71 Identities=18% Similarity=0.172 Sum_probs=43.2
Q ss_pred HHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012452 100 LEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 172 (463)
Q Consensus 100 ~eil~~~~~~~-~~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 172 (463)
.+.++..+..+ +..-++.+++|.....+-+.....+.-.|+..|. .|+.|+.+++...+.+|+++..+.+.
T Consensus 52 ~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~--~y~~t~~~~~~~~~~~gi~v~~~d~~ 123 (377)
T TIGR01324 52 HFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDS--AYEPTRYFCDIVLKRMGVDITYYDPL 123 (377)
T ss_pred HHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCC--CcHHHHHHHHHHHHhcCcEEEEECCC
Confidence 44555555543 3334566777777443322222333335665554 57889999988888999998877654
No 388
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=32.75 E-value=54 Score=32.84 Aligned_cols=54 Identities=22% Similarity=0.222 Sum_probs=35.6
Q ss_pred cEEEEechhHHHHHH-HHHHHcC----------------CC-eEEEEEeCCCC-----cHHHHHHHHHHHHHhCCcEEEE
Q 012452 113 DIAIAFSGAEDVALI-EYAHLTG----------------RP-FRVFSLDTGRL-----NPETYRFFDEVEKHFGIRIEYM 169 (463)
Q Consensus 113 ~i~vafSGGKDS~vl-~L~~~~~----------------~~-i~vi~~DTg~~-----fpeT~~~~~~~~~~~gl~i~~~ 169 (463)
-+.|+|| |.++|| +|+.+.. .. -.++|+|-|.- |+-....++.+++. ++.|++.
T Consensus 195 ~~LiGFS--KGcvVLNqll~El~~~~~~~~~~~~~~~~l~~I~~~~wLD~Gh~g~~~~w~T~~~~L~~l~~~-~i~i~vH 271 (303)
T PF10561_consen 195 LTLIGFS--KGCVVLNQLLYELHYLEELARVDKEIERFLSRISDMYWLDGGHNGGSNTWITDENVLKELAKL-GIRIHVH 271 (303)
T ss_pred eEEEEec--CcchHHHHHHHHHHhhhcccCCchHHHHHHHhhheEEEeccCCCCCCCceecCHHHHHHHHhc-CcEEEEe
Confidence 3678999 556777 6666532 11 25899999854 55555666666654 8888775
No 389
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=32.29 E-value=1.4e+02 Score=29.94 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=60.2
Q ss_pred CeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHHHHHHHHHHhcC--CCeEEEEEEcCCCcHHHHHHcC-----
Q 012452 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKL----- 424 (463)
Q Consensus 352 ~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p~l~~la~~~~~--~~v~f~~VD~d~~~~~l~~~~~----- 424 (463)
-|.++|=+|.+++.. .+.|.||+|+.+--....+ -.-..+++++.+ ..+.++.-|++.. ..-. ..+
T Consensus 211 LVREiTFeN~EELtE---EGlPflILf~~kdD~~s~k--~F~~aI~ReL~~e~~~in~l~ADG~~f-~hpL-~HlgKs~~ 283 (375)
T KOG0912|consen 211 LVREITFENAEELTE---EGLPFLILFRKKDDKESEK--IFKNAIARELDDETLAINFLTADGKVF-KHPL-RHLGKSPD 283 (375)
T ss_pred hhhhhhhccHHHHhh---cCCceEEEEecCCcccHHH--HHHHHHHHHhhhhhhccceeecCccee-cchH-HHhCCCcc
Confidence 588888889899887 8999999999887544432 122455666654 2477888787655 2211 122
Q ss_pred -----CCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 425 -----QLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 425 -----~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
-|.++=..++|+.++ -+-..| .|.+||..|
T Consensus 284 DLPviaIDsF~Hmylfp~f~--di~~pG------kLkqFv~DL 318 (375)
T KOG0912|consen 284 DLPVIAIDSFRHMYLFPDFN--DINIPG------KLKQFVADL 318 (375)
T ss_pred cCcEEEeeccceeeecCchh--hhcCcc------HHHHHHHHH
Confidence 245555666666655 233333 688887654
No 390
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=31.19 E-value=3.2e+02 Score=26.61 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHcCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEE
Q 012452 98 SPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM 169 (463)
Q Consensus 98 ~a~eil~~~~~~~~~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~ 169 (463)
+-..+++.+...+.+.+++++|. .++|-.++....+.+.|+-.++-..++. ..+++++.+ .|+++.++
T Consensus 73 ~~~~~~~~A~~~i~~dvILT~s~--S~~v~~~l~~~~~~~~V~v~ESrP~~eG-~~~a~~L~~-~GI~vtli 140 (253)
T PRK06372 73 HEKMAIEHAKPLFNDSVIGTISS--SQVLKAFISSSEKIKSVYILESRPMLEG-IDMAKLLVK-SGIDVVLL 140 (253)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCC--cHHHHHHHHhcCCCCEEEEecCCCchHH-HHHHHHHHH-CCCCEEEE
Confidence 34556677888877678888883 3444455545555467777776555544 667777764 68888765
No 391
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=31.00 E-value=66 Score=29.35 Aligned_cols=36 Identities=11% Similarity=0.270 Sum_probs=26.1
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHH
Q 012452 417 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 459 (463)
Q Consensus 417 ~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI 459 (463)
.+.+ .+.+|.++||+++ +|+ ....| ..+.+.|.+.|
T Consensus 165 ~~~a-~~~gv~G~Pt~vv--~g~---~~~~G-~~~~~~~~~~i 200 (201)
T cd03024 165 EARA-RQLGISGVPFFVF--NGK---YAVSG-AQPPEVFLQAL 200 (201)
T ss_pred HHHH-HHCCCCcCCEEEE--CCe---EeecC-CCCHHHHHHHh
Confidence 4566 6889999999987 444 23444 68888887765
No 392
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=30.15 E-value=4.3e+02 Score=27.37 Aligned_cols=81 Identities=20% Similarity=0.356 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCCh-HHH
Q 012452 99 PLEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDA-VEV 176 (463)
Q Consensus 99 a~eil~~~~~~~-~~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~-~~~ 176 (463)
..+.++..+... +..-++.||.|--.+.+-+.......-.|+.. +..|..|+.+++++..++|+++..+.+.. ..+
T Consensus 56 t~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~--~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l 133 (386)
T PF01053_consen 56 TVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVAS--DDLYGGTYRLLEELLPRFGVEVTFVDPTDLEAL 133 (386)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEE--SSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHH
T ss_pred cHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEec--CCccCcchhhhhhhhcccCcEEEEeCchhHHHH
Confidence 344555554432 23356677755553322122222223345554 45799999999999999999999987743 445
Q ss_pred HHHHH
Q 012452 177 QALVR 181 (463)
Q Consensus 177 ~~~~~ 181 (463)
...+.
T Consensus 134 ~~~l~ 138 (386)
T PF01053_consen 134 EAALR 138 (386)
T ss_dssp HHHHC
T ss_pred Hhhcc
Confidence 55444
No 393
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=29.98 E-value=2e+02 Score=30.29 Aligned_cols=82 Identities=18% Similarity=0.213 Sum_probs=50.0
Q ss_pred cCChhhHHHHHHHhccCCHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHc------CCCeEEEEEeCCCCcHHHHH
Q 012452 81 VEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLT------GRPFRVFSLDTGRLNPETYR 153 (463)
Q Consensus 81 ~~~~~~~~~l~~~l~~~~a~eil~~~~~~~~~~i~vafSGGKDS~vl-~L~~~~------~~~i~vi~~DTg~~fpeT~~ 153 (463)
+-++.|.-.+..-|+.+ +.+.+..+ .++-|..|||-||.++ .++.+. ...-.+...-.|.+..--+.
T Consensus 201 ~s~p~d~~~~r~~~~~a----V~KRLM~d--~p~GvLLSGGLDSSLvAsia~R~lk~~~~~~~~~lhsFaIGle~SPDL~ 274 (543)
T KOG0571|consen 201 PSTPLDYLALRHTLEKA----VRKRLMTD--VPFGVLLSGGLDSSLVASIAARELKKAQAARGSKLHSFAIGLEDSPDLL 274 (543)
T ss_pred CCCcccHHHHHHHHHHH----HHHHhhcc--CceeEEeeCCchHHHHHHHHHHHHHHhhhhcCCCceEEEecCCCChhHH
Confidence 33445666665555441 22233333 3477888999998665 444331 12235555666877777778
Q ss_pred HHHHHHHHhCCcEEE
Q 012452 154 FFDEVEKHFGIRIEY 168 (463)
Q Consensus 154 ~~~~~~~~~gl~i~~ 168 (463)
..+++++.+|...+.
T Consensus 275 aarkVAd~igt~Hhe 289 (543)
T KOG0571|consen 275 AARKVADFIGTIHHE 289 (543)
T ss_pred HHHHHHHHhCCcceE
Confidence 899999999986543
No 394
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=29.29 E-value=65 Score=23.76 Aligned_cols=53 Identities=13% Similarity=0.059 Sum_probs=31.9
Q ss_pred EEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCC---CcHHHHHHcCCCCCCCEEEE
Q 012452 376 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG---DQKEYAKQKLQLGSFPTILF 434 (463)
Q Consensus 376 V~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~---~~~~l~~~~~~I~~~PTi~~ 434 (463)
..|+.+.|+.|+...-.+++. +-.+....+|... ...++. +......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-----~~~~~~~~i~~~~~~~~~~~~~-~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALL-----GIPYEWVEVDILKGETRTPEFL-ALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHc-----CCCcEEEEecCCCcccCCHHHH-HhCCCCCCCEEEE
Confidence 457789999999876655543 2134455555422 113444 4445668999963
No 395
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=27.09 E-value=2.5e+02 Score=26.28 Aligned_cols=104 Identities=12% Similarity=-0.015 Sum_probs=58.3
Q ss_pred EEechhHHH-------HHHHHHHHc-CCCeEEEEEeCCCC-cHHHHHHHHHHHHHh-CCcEEEEcCC-hHHHHHHHHhcC
Q 012452 116 IAFSGAEDV-------ALIEYAHLT-GRPFRVFSLDTGRL-NPETYRFFDEVEKHF-GIRIEYMFPD-AVEVQALVRSKG 184 (463)
Q Consensus 116 vafSGGKDS-------~vl~L~~~~-~~~i~vi~~DTg~~-fpeT~~~~~~~~~~~-gl~i~~~~p~-~~~~~~~~~~~g 184 (463)
+..|||.|. .+-+++.+. +....+.|+-|... .++..+.+.+.-+++ |.++..+... .....+.+....
T Consensus 3 ~~igg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad 82 (212)
T cd03146 3 LLTSGGGLGYLAHALPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEAD 82 (212)
T ss_pred EEEeCCcccccccchHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCC
Confidence 566777663 233445444 45678899999865 456566667777778 8887665411 111122222222
Q ss_pred CCCCCccchhhhhhchhhhHHHHHHccC---ceEEEee
Q 012452 185 LFSFYEDGHQECCRVRKVRPLRRALKGL---RAWITGQ 219 (463)
Q Consensus 185 ~~~~~~~~~~~Cc~~~Kv~Pl~r~l~~~---~~~itG~ 219 (463)
.-.++--+...+-..+|-.++...|+.. ...+.|+
T Consensus 83 ~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~ 120 (212)
T cd03146 83 VIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGW 120 (212)
T ss_pred EEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEE
Confidence 1112223445566666666777766643 3667775
No 396
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=26.99 E-value=65 Score=25.37 Aligned_cols=35 Identities=14% Similarity=0.377 Sum_probs=19.9
Q ss_pred CCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHH
Q 012452 427 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 461 (463)
Q Consensus 427 ~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~ 461 (463)
..-|++++|+......-...-...+.++|.+|+++
T Consensus 40 G~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~ 74 (78)
T PF08806_consen 40 GAPPELVLLDEDGEEVERINIEKWKTDEIEEFLNE 74 (78)
T ss_dssp S---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHH
T ss_pred CCCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHH
Confidence 35699999975443322232236899999999986
No 397
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that ser
Probab=26.59 E-value=1.3e+02 Score=25.96 Aligned_cols=48 Identities=17% Similarity=0.103 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHcCCcEEEEechhHHHHHH-HHHHHcCCC-eEEEEEeCC
Q 012452 98 SPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRP-FRVFSLDTG 145 (463)
Q Consensus 98 ~a~eil~~~~~~~~~~i~vafSGGKDS~vl-~L~~~~~~~-i~vi~~DTg 145 (463)
...+.+++..+-.++.++|+++..-|...| +.+.+.+.+ .+.-++||.
T Consensus 63 ~~~~v~~~l~~~l~~~~lv~hn~~fD~~~l~~~~~~~g~~~~~~~~idt~ 112 (156)
T cd06130 63 TFPEVWPEIKPFLGGSLVVAHNASFDRSVLRAALEAYGLPPPPYQYLCTV 112 (156)
T ss_pred CHHHHHHHHHHHhCCCEEEEeChHHhHHHHHHHHHHcCCCCCCCCEEEHH
Confidence 455667777776777799999999998777 556554432 233456664
No 398
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.59 E-value=1.7e+02 Score=25.27 Aligned_cols=43 Identities=19% Similarity=0.334 Sum_probs=27.3
Q ss_pred HHHHHHHc--CCcEEEEechhHH----------HHHH-----HHHHHcCCCeEEEEEeCC
Q 012452 103 MDRALEKF--GNDIAIAFSGAED----------VALI-----EYAHLTGRPFRVFSLDTG 145 (463)
Q Consensus 103 l~~~~~~~--~~~i~vafSGGKD----------S~vl-----~L~~~~~~~i~vi~~DTg 145 (463)
++..++.+ +..+++.|+|+|| ++.. .-+..+..++.++++|.|
T Consensus 15 ~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG 74 (128)
T KOG3425|consen 15 FEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVG 74 (128)
T ss_pred HHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEec
Confidence 33344443 3459999999993 3322 333346667888888888
No 399
>PLN02673 quinolinate synthetase A
Probab=26.46 E-value=1.8e+02 Score=32.39 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=26.5
Q ss_pred CCCCCCCCCCccccccccccCCCccccCChhhHHHHHHHhccC-CHHHHHHHHHH
Q 012452 55 PLNAEPKRNDSVVPLAATLATPVAEKVEGEEDFEQFAKELENA-SPLEIMDRALE 108 (463)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~a~eil~~~~~ 108 (463)
|.+..|.........+.+ ..|+.+....+..+++|-++++.. ...++.+.+++
T Consensus 54 ~~~~~~~~~~~~~~~~~~-~~~~~~~e~lP~kl~eIveeF~~l~dWEeRYr~LIe 107 (724)
T PLN02673 54 PPDSAPSNASPFSCSAVA-FSPSQTTELVPCKLQRLIKEFKSLTEPVDRVKRLLH 107 (724)
T ss_pred CCCCCCCCCCccceeeee-cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 334444444333332222 233334445556677777666544 34577776663
No 400
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.30 E-value=2.5e+02 Score=22.54 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCcEEEEe--chhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEc-CChHHH
Q 012452 100 LEIMDRALEKFGNDIAIAF--SGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF-PDAVEV 176 (463)
Q Consensus 100 ~eil~~~~~~~~~~i~vaf--SGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~-p~~~~~ 176 (463)
...++..++++|..+ +-+ -||...-.-.|-.... +..++.+=|++--..+...+++.++++++++...+ .....+
T Consensus 12 ~~~~~~~~~~~G~~~-~~hg~~~~~~~~~~~l~~~i~-~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 12 ERRYKRILEKYGGKL-IHHGRDGGDEKKASRLPSKIK-KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred HHHHHHHHHHcCCEE-EEEecCCCCccchhHHHHhcC-CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 355677788888643 333 1222212211222221 22344445666777889999999999999998886 444444
Q ss_pred HHH
Q 012452 177 QAL 179 (463)
Q Consensus 177 ~~~ 179 (463)
...
T Consensus 90 ~~~ 92 (97)
T PF10087_consen 90 ERA 92 (97)
T ss_pred HHH
Confidence 443
No 401
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=25.83 E-value=4.8e+02 Score=26.83 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=44.7
Q ss_pred HHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHH
Q 012452 100 LEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQA 178 (463)
Q Consensus 100 ~eil~~~~~~-~~~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~~~~~~ 178 (463)
.+.++..+.. ++..-++.+++|.....+-+.....+.-.|+.. ...|+.|..+++.+ ..+|+++....++...+.+
T Consensus 55 ~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~--~~~y~~~~~~~~~~-~~~g~~v~~~~~d~~~l~~ 131 (385)
T PRK08574 55 LRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLP--MEAYGTTLRLLKSL-EKFGVKVVLAYPSTEDIIE 131 (385)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEc--CCCchhHHHHHHHh-hccCcEEEEECCCHHHHHH
Confidence 4445554444 333345677888765433222223332344433 45788898888876 7789988777776555544
Q ss_pred HH
Q 012452 179 LV 180 (463)
Q Consensus 179 ~~ 180 (463)
.+
T Consensus 132 ~i 133 (385)
T PRK08574 132 AI 133 (385)
T ss_pred hc
Confidence 44
No 402
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=25.78 E-value=6e+02 Score=26.36 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=41.9
Q ss_pred HHHHHHHHH-cCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 012452 101 EIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 171 (463)
Q Consensus 101 eil~~~~~~-~~~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p 171 (463)
+.++..+.. ++..-++.+++|.+...+-+.....+.-.|+..+ ..|+.|+.......+.+|++++.+.+
T Consensus 60 ~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~v~~ 129 (418)
T TIGR01326 60 DVLEQRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSS--YLYGGTYNLFKHTLKRLGIEVRFVDP 129 (418)
T ss_pred HHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEEC--CCcHHHHHHHHHHHHHcCcEEEEECC
Confidence 344444443 4444567788887754332222222223455443 56788999888888999999887754
No 403
>PRK07050 cystathionine beta-lyase; Provisional
Probab=25.33 E-value=5.4e+02 Score=26.52 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=44.2
Q ss_pred HHHHHHHHHHc-CCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012452 100 LEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 172 (463)
Q Consensus 100 ~eil~~~~~~~-~~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 172 (463)
.+.++..+..+ +..-++.++||.....+-+.....+.-.|+..+ ..|+.|+.+.+...+.+|+++..+.+.
T Consensus 67 ~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~--~~y~~~~~~~~~~~~~~Gi~v~~vd~~ 138 (394)
T PRK07050 67 SLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVKAGDDVLIPD--NAYGPNRDHGEWLARDFGITVRFYDPL 138 (394)
T ss_pred HHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHhCCCCEEEEec--CCcccHHHHHHHHHHhcCeEEEEECCC
Confidence 45566555554 444567778887754331111133333455444 467888998888899999998877553
No 404
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=24.92 E-value=6.6e+02 Score=25.76 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=41.6
Q ss_pred HHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012452 100 LEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 172 (463)
Q Consensus 100 ~eil~~~~~~-~~~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 172 (463)
.+.++..+.. ++..-++.++||.....+-+.....+.-.|+.. ...|+.|+.+.+.....+|+++..+...
T Consensus 63 ~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~ 134 (390)
T PRK08133 63 VTMFQERLAALEGAEACVATASGMAAILAVVMALLQAGDHVVSS--RSLFGSTVSLFEKIFARFGIETTFVDLT 134 (390)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEc--cCcchhHHHHHHHHHHHcCcEEEEECCC
Confidence 3444444433 333335677888875443222222222244432 3468889998888888999998877553
No 405
>PRK08114 cystathionine beta-lyase; Provisional
Probab=24.76 E-value=5.7e+02 Score=26.56 Aligned_cols=73 Identities=10% Similarity=0.085 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHcC-CcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012452 98 SPLEIMDRALEKFG-NDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 172 (463)
Q Consensus 98 ~a~eil~~~~~~~~-~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 172 (463)
...+.++..+.... ..-++.|+.|--..-+-+.....+.-.|+.. ...|..|+.+++++.+++|+++.++.+.
T Consensus 62 Pt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~--~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~ 135 (395)
T PRK08114 62 LTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMT--GTAYEPTQDFCSKILSKLGVTTTWFDPL 135 (395)
T ss_pred hhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEe--CCCcHHHHHHHHHHHHhcCcEEEEECCC
Confidence 34666666665543 3467778777664322111112222234433 4578999999999999999999888654
No 406
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=24.72 E-value=4.5e+02 Score=24.29 Aligned_cols=93 Identities=14% Similarity=0.234 Sum_probs=54.9
Q ss_pred CCCcEEEEEe-cCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------cHHHHH
Q 012452 370 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK 421 (463)
Q Consensus 370 ~~k~vlV~Fy-A~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~---------------------------~~~l~~ 421 (463)
.++.|++.|| -.+-=.|-...-.|.+.+.++..-+-.++.+.+|.. +.++|
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Is- 110 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEIS- 110 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhH-
Confidence 4678888888 445455655556677777777654445555444321 16788
Q ss_pred HcCCC----CCCC--EEEEE-eCCCcCee--ecCCCCCCHHHHHHHHHHhC
Q 012452 422 QKLQL----GSFP--TILFF-PKHSSKPI--KYPSERRDVDSLMAFVDALR 463 (463)
Q Consensus 422 ~~~~I----~~~P--Ti~~f-~~g~~~~~--~y~gg~~~~~~L~~fI~~l~ 463 (463)
++|+| .+.+ -++++ ++|....+ ....-.++.++....|+.++
T Consensus 111 rdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ 161 (196)
T KOG0852|consen 111 RDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQ 161 (196)
T ss_pred HhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHHh
Confidence 89987 3444 33333 44443221 22222389999988888764
No 407
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=24.45 E-value=5.1e+02 Score=27.14 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=44.4
Q ss_pred HHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 012452 100 LEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 171 (463)
Q Consensus 100 ~eil~~~~~~-~~~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p 171 (463)
.+.++..+.. .+..-++.+++|.....+-+.....+.=.|+..+ ..|+.|+.....+.+.+|++++.+..
T Consensus 66 ~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~ 136 (431)
T PRK08248 66 TDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDP 136 (431)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcc--CchhhHHHHHHHHHHhCCEEEEEECC
Confidence 4555555544 3345677888888754432222233323455444 46889999999999999999887754
No 408
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=24.29 E-value=1.3e+02 Score=28.05 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=16.1
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCC
Q 012452 417 KEYAKQKLQLGSFPTILFFPKHS 439 (463)
Q Consensus 417 ~~l~~~~~~I~~~PTi~~f~~g~ 439 (463)
.... ++++|+++||+++ +|+
T Consensus 157 ~~~a-~~~gI~gtPtfiI--nGk 176 (207)
T PRK10954 157 EKAA-ADLQLRGVPAMFV--NGK 176 (207)
T ss_pred HHHH-HHcCCCCCCEEEE--CCE
Confidence 4556 7899999999987 566
No 409
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=24.25 E-value=93 Score=25.66 Aligned_cols=57 Identities=9% Similarity=0.172 Sum_probs=34.5
Q ss_pred EecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCC--CCCEEEEE-eCCC
Q 012452 378 LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG--SFPTILFF-PKHS 439 (463)
Q Consensus 378 FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~--~~PTi~~f-~~g~ 439 (463)
||-.+|+.|......+.... -. ..+.|+.+.-... .++. +.+++. ..-+.++. .+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d--~~-~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD--RG-GRLRFVDIQSEPD-QALL-ASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC--CC-CCEEEEECCChhh-hhHH-HhcCcCHHHHcCeeEEecCCC
Confidence 78899999999887777661 11 2466666533333 4444 456654 45555554 5554
No 410
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=24.01 E-value=1e+02 Score=29.31 Aligned_cols=38 Identities=32% Similarity=0.416 Sum_probs=28.4
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCCHHHHHHHHHHh
Q 012452 417 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462 (463)
Q Consensus 417 ~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~~~~L~~fI~~l 462 (463)
..+. .+++|.++||+++-.+ .+.| ..+.++|.+.|...
T Consensus 205 ~~~a-~~~gv~gTPt~~v~~~------~~~g-~~~~~~l~~~i~~~ 242 (244)
T COG1651 205 YKLA-QQLGVNGTPTFIVNGK------LVPG-LPDLDELKAIIDEA 242 (244)
T ss_pred HHHH-HhcCCCcCCeEEECCe------eecC-CCCHHHHHHHHHHh
Confidence 4566 7899999999975443 3455 57789999988765
No 411
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=23.56 E-value=1.1e+02 Score=27.00 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=16.3
Q ss_pred HHHHHHcCCCCCCCEEEEEeCCC
Q 012452 417 KEYAKQKLQLGSFPTILFFPKHS 439 (463)
Q Consensus 417 ~~l~~~~~~I~~~PTi~~f~~g~ 439 (463)
.+.+ .+++|.++||+++ +|+
T Consensus 133 ~~~~-~~~gi~gTPt~iI--nG~ 152 (178)
T cd03019 133 EKLA-KKYKITGVPAFVV--NGK 152 (178)
T ss_pred HHHH-HHcCCCCCCeEEE--CCE
Confidence 4567 7899999999987 555
No 412
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=23.52 E-value=2.6e+02 Score=25.19 Aligned_cols=58 Identities=19% Similarity=0.112 Sum_probs=38.2
Q ss_pred CcEEEEechhHHHHHH-HHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHh---CCcEEEEc
Q 012452 112 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF---GIRIEYMF 170 (463)
Q Consensus 112 ~~i~vafSGGKDS~vl-~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~---gl~i~~~~ 170 (463)
..++|++|-|+-..-+ +++.. +.++.+++-.+|.+=+.|.++=+++.+.+ |.++..-.
T Consensus 29 k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~s 90 (186)
T COG1751 29 KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQS 90 (186)
T ss_pred ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeeh
Confidence 4589999877765433 44433 35688889999988776666655555554 77775543
No 413
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=23.00 E-value=3.3e+02 Score=20.43 Aligned_cols=52 Identities=12% Similarity=0.014 Sum_probs=32.1
Q ss_pred EEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCC---CcHHHHHHcCCCCCCCEEE
Q 012452 376 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG---DQKEYAKQKLQLGSFPTIL 433 (463)
Q Consensus 376 V~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~---~~~~l~~~~~~I~~~PTi~ 433 (463)
..|+.+.|+.|+...-.+++. +-.+.+..+|... ..+++. +-.-...+|++.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~-----gl~~e~~~v~~~~~~~~~~~~~-~inP~g~vP~L~ 56 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK-----GLRCEEYDVSLPLSEHNEPWFM-RLNPTGEVPVLI 56 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc-----CCCCEEEEecCCcCccCCHHHH-HhCcCCCCCEEE
Confidence 467888999998876444433 3235666666532 114455 444567899995
No 414
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=22.91 E-value=2.7e+02 Score=22.52 Aligned_cols=44 Identities=11% Similarity=0.065 Sum_probs=27.9
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHH
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA 420 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~ 420 (463)
++.|++ .+.--++....=+.+..-+...+|.|-.+|++.+ ++..
T Consensus 2 i~vY~t-s~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d-~~~r 45 (92)
T cd03030 2 IKVYIA-SSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMN-EENR 45 (92)
T ss_pred EEEEEe-cccccHHHHHHHHHHHHHHHHCCCceEEEecCCC-HHHH
Confidence 344444 4555666665555666666666799999999877 4433
No 415
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.87 E-value=5.8e+02 Score=23.85 Aligned_cols=87 Identities=17% Similarity=0.241 Sum_probs=50.7
Q ss_pred hhHHH-HHHHHHHHcCCCeEEEEEeCCCCcHHHHHHH----HHHHHHhCCcEEEEcCChHHHH-HHHHhcCCCCCCccch
Q 012452 120 GAEDV-ALIEYAHLTGRPFRVFSLDTGRLNPETYRFF----DEVEKHFGIRIEYMFPDAVEVQ-ALVRSKGLFSFYEDGH 193 (463)
Q Consensus 120 GGKDS-~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~----~~~~~~~gl~i~~~~p~~~~~~-~~~~~~g~~~~~~~~~ 193 (463)
-+=|| .+|..+...+.++.++|-|...|+-.-|..+ +++++++|+++.- .+-.+.+ -+...+|+...++.+.
T Consensus 12 CAPcs~y~le~l~~~~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~ie--gdY~~~~~w~~~vKg~E~EpE~G~ 89 (204)
T COG1636 12 CAPCSGYVLEKLRDSGIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIE--GDYEDLEKWFERVKGMEDEPEGGK 89 (204)
T ss_pred cCCCcHHHHHHHHhcCcceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeee--cCcccHHHHHHHhhcchhCCCCCc
Confidence 45565 4666677778899999999999877666654 4556667866543 2321222 2234455554555443
Q ss_pred hhh--hhchhhhHHHHHH
Q 012452 194 QEC--CRVRKVRPLRRAL 209 (463)
Q Consensus 194 ~~C--c~~~Kv~Pl~r~l 209 (463)
.| |.....+-.....
T Consensus 90 -RC~~Cfd~Rle~tA~~A 106 (204)
T COG1636 90 -RCTMCFDMRLEKTAKKA 106 (204)
T ss_pred -hhHhHHHHHHHHHHHHH
Confidence 35 5554444443333
No 416
>PRK05967 cystathionine beta-lyase; Provisional
Probab=22.75 E-value=6.7e+02 Score=26.03 Aligned_cols=74 Identities=16% Similarity=0.278 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCCh
Q 012452 98 SPLEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDA 173 (463)
Q Consensus 98 ~a~eil~~~~~~-~~~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~~ 173 (463)
...+.|+..+.. .+..-++.++.|.....+-+.....+.-.|+..+. .|+.|+.++.++.+++|+++..+.+..
T Consensus 64 Pt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~--~Y~~~~~l~~~~l~~~Gi~v~~vd~~~ 138 (395)
T PRK05967 64 PTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDS--VYYPTRHFCDTMLKRLGVEVEYYDPEI 138 (395)
T ss_pred hHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccC--CcHHHHHHHHHHHHhcCeEEEEeCCCC
Confidence 345556655543 22323455555654222111122333334555544 478899999999999999998886543
No 417
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=22.70 E-value=52 Score=33.06 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=23.3
Q ss_pred CCc-cchhccCCcccCcccCCccCCCCCCccccc
Q 012452 273 VPI-NSLHSQGYISIGCEPCTRPVLPGQHEREGR 305 (463)
Q Consensus 273 lp~-npLy~~Gy~siGC~~Ct~~~~~g~~~r~GR 305 (463)
+|. .+++-.-|.+.||.+|.+|.-...-++.||
T Consensus 274 ip~~~ev~p~pf~t~gC~~cnRP~~n~~~e~p~r 307 (339)
T COG2516 274 IPKVMEVPPSPFRTRGCPGCNRPYPNFMFELPGR 307 (339)
T ss_pred cccccCCCccccccCCCCCCCCCCcchHhhccCC
Confidence 555 555655789999999999874323367776
No 418
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=22.41 E-value=1.8e+02 Score=21.52 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=31.0
Q ss_pred EEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCCCCCCCEEE
Q 012452 376 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 433 (463)
Q Consensus 376 V~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~I~~~PTi~ 433 (463)
..|+.+.|++|.+..-.+.... .+-.+....+|......++. +......+|++.
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~---~~i~~~~~~~~~~~~~~~~~-~~~p~~~vP~l~ 55 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETG---LGDDVELVLVNPWSDDESLL-AVNPLGKIPALV 55 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhC---CCCCcEEEEcCcccCChHHH-HhCCCCCCCEEE
Confidence 3567888999998665444310 12134555555433324555 455567899875
No 419
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=22.37 E-value=6.6e+02 Score=26.00 Aligned_cols=72 Identities=13% Similarity=0.230 Sum_probs=44.2
Q ss_pred HHHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 012452 99 PLEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 172 (463)
Q Consensus 99 a~eil~~~~~~-~~~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p~ 172 (463)
..+.++..+.. ++..-++.+++|.+...+-+.....+.-.|+..+ ..|+.|+.....+.+.+|++++.+...
T Consensus 71 ~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~--~~~~~t~~~~~~~~~~~G~~v~~vd~~ 143 (403)
T PRK07810 71 TVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAAR--SLFGSCFVVCNEILPRWGVETVFVDGE 143 (403)
T ss_pred hHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEcc--CCcchHHHHHHHHHHHcCcEEEEECCC
Confidence 34555555554 3444567888787754331211223333455443 367889998888889999999887543
No 420
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=22.34 E-value=1.4e+02 Score=28.72 Aligned_cols=66 Identities=18% Similarity=0.266 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCcEEEEechhHHH-HHH-HHHHH------cCCCeEEEEEe--CCCC--cHHHHH--HHHHHHHHhCCc
Q 012452 100 LEIMDRALEKFGNDIAIAFSGAEDV-ALI-EYAHL------TGRPFRVFSLD--TGRL--NPETYR--FFDEVEKHFGIR 165 (463)
Q Consensus 100 ~eil~~~~~~~~~~i~vafSGGKDS-~vl-~L~~~------~~~~i~vi~~D--Tg~~--fpeT~~--~~~~~~~~~gl~ 165 (463)
.++|+.++.+-+....+++|||..- .++ +|... ...++.|+.+| -|.. .++... ..+.+.++++.+
T Consensus 21 ~~~l~~~~~~~~~~~~iglsgG~T~~~~~~~L~~~~~~~~~~~~~v~v~~~DEr~gv~~~~~~s~~~~~~~~l~~~~~~~ 100 (261)
T PRK00443 21 ANRINAFLPTKERPFVLGLATGSSPLETYKALIELHKAGKVDFSRVTTFNLDEYVGLPADHPESYRYFMRENFFDHVDIP 100 (261)
T ss_pred HHHHHHHhhccCCceEEEecCCCCHHHHHHHHHHHhhhcCCchHHeEEEeCceecCCCCCChHHHHHHHHHHHhccCCCC
Confidence 3455555555444467889999873 444 45531 23468999998 4432 232221 234555555543
No 421
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=22.16 E-value=1.4e+02 Score=25.36 Aligned_cols=52 Identities=21% Similarity=0.413 Sum_probs=34.2
Q ss_pred CChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCCCcHHHHHHcCC--CCCCCEEEEEe
Q 012452 382 WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQ--LGSFPTILFFP 436 (463)
Q Consensus 382 wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~~~~~l~~~~~~--I~~~PTi~~f~ 436 (463)
.|++|..++-.+...-. +.. .+.+.+|+...--.++. ...+ -++.|++++=.
T Consensus 23 ~Cp~c~~iEGlLa~~P~-l~~-~ldV~rV~f~RPR~~vi-~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPD-LRE-RLDVRRVDFPRPRQAVI-ALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChh-hhh-cccEEEeCCCCchHHHH-HHhChhccCCCEEEeCC
Confidence 39999988876654322 222 58899999887633444 4443 47899997643
No 422
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=21.85 E-value=7.5e+02 Score=25.23 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=40.2
Q ss_pred HHHHHHHHHH-cCCcEEEEechhHHHHHHHHHHHcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 012452 100 LEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 171 (463)
Q Consensus 100 ~eil~~~~~~-~~~~i~vafSGGKDS~vl~L~~~~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~p 171 (463)
.+.++..+.. ++..-++.+++|.....+-+.....+.-.|+.. ...|+.|+.+...+.+.+|++++.+..
T Consensus 56 ~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~--~~~~~~t~~~~~~~~~~~g~~v~~v~~ 126 (380)
T TIGR01325 56 VAAFEERIAALEGAERAVATATGMSAIQAALMTLLQAGDHVVAS--RSLFGSTVGFISEILPRFGIEVSFVDP 126 (380)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEe--cCCcchHHHHHHHHHHHhCCEEEEECC
Confidence 4444444444 332345667777764433221112222244543 346788999888888999999877754
No 423
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=21.70 E-value=1.1e+02 Score=28.68 Aligned_cols=44 Identities=32% Similarity=0.431 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCcEEEEechhH-HHHHHHHHHHcCCCeEEEEEe
Q 012452 99 PLEIMDRALEKFGNDIAIAFSGAE-DVALIEYAHLTGRPFRVFSLD 143 (463)
Q Consensus 99 a~eil~~~~~~~~~~i~vafSGGK-DS~vl~L~~~~~~~i~vi~~D 143 (463)
--+.++.+++. +.+++.-.+|++ |--++.++++.+.++-+++.+
T Consensus 81 ~~~v~~~aL~~-g~~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 81 NPEVAEAALKA-GADIINDISGFEDDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp SHHHHHHHHHH-TSSEEEETTTTSSSTTHHHHHHHHTSEEEEESES
T ss_pred CHHHHHHHHHc-CcceEEecccccccchhhhhhhcCCCEEEEEecc
Confidence 35788889988 767888888988 778889999999888888888
No 424
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=21.56 E-value=1.1e+02 Score=32.95 Aligned_cols=85 Identities=16% Similarity=0.318 Sum_probs=54.3
Q ss_pred cCCCCeeecChhhHHHHHhhcCCCCcEEEEEecCCChhHHHhHH-HHH--HHHHHhcCCCeEEEEEEcCCCcHHHHH---
Q 012452 348 FNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEG-SYV--ELADKLAGNGVKVGKFRADGDQKEYAK--- 421 (463)
Q Consensus 348 ~~~~~V~~lt~~~f~~~i~~~~~~k~vlV~FyA~wC~~C~~~~p-~l~--~la~~~~~~~v~f~~VD~d~~~~~l~~--- 421 (463)
++..+-.....+.|++.-. .++++++-..-+.|-.|..|+. .|+ +.++.+.+ +++-++||-++- +++-+
T Consensus 92 ynpvdwypwgqeaf~kar~---enkpifLsvgystchwchvmekesfeneet~~ilne-nfv~ikVDREER-PDVDK~YM 166 (786)
T KOG2244|consen 92 YNPVDWYPWGQEAFNKARA---ENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNE-NFVKIKVDREER-PDVDKLYM 166 (786)
T ss_pred cCCcccCcchHHHHHHHHh---cCCCEEEEcccccchheeeeecccccCHHHHHHHhh-hhhhhccChhhc-CchHHHHH
Confidence 3333444555677877655 8999999999899999998876 343 46666665 344445554443 44431
Q ss_pred ----HcCCCCCCCEEEEEeC
Q 012452 422 ----QKLQLGSFPTILFFPK 437 (463)
Q Consensus 422 ----~~~~I~~~PTi~~f~~ 437 (463)
...+-.+.|.-++...
T Consensus 167 ~Fv~assg~GGWPmsV~LTP 186 (786)
T KOG2244|consen 167 AFVVASSGGGGWPMSVFLTP 186 (786)
T ss_pred HHHHhccCCCCCceeEEeCC
Confidence 2345667887666643
No 425
>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins. Three prime repair exonuclease (TREX)1 and TREX2 are closely related DEDDh-type DnaQ-like 3'-5' exonucleases. They contain three conserved sequence motifs known as ExoI, II, and III, with a specific Hx(4)D conserved pattern at ExoIII. These motifs contain four conserved acidic residues that participate in coordination of divalent metal ions required for catalysis. Both proteins play a role in the metabolism and clearance of DNA. TREX1 is the major 3'-5' exonuclease activity detected in mammalian cells. Mutations in the human TREX1 gene can cause Aicardi-Goutieres syndrome (AGS), which is characterized by perturbed innate immunity and presents itself as a severe neurological disease. TREX1 degrades ssDNA generated by aberrant replication intermediates to prevent checkpoint activation and autoimmune disease. There are distinct structural differences between TREX1 and TRE
Probab=21.39 E-value=3.8e+02 Score=24.17 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCC-cEEEEech-hHHHHHH-HHHHHcCCCe--EEEEEeCCCCcHHHHHHHHHHHHH-hCCcE
Q 012452 101 EIMDRALEKFGN-DIAIAFSG-AEDVALI-EYAHLTGRPF--RVFSLDTGRLNPETYRFFDEVEKH-FGIRI 166 (463)
Q Consensus 101 eil~~~~~~~~~-~i~vafSG-GKDS~vl-~L~~~~~~~i--~vi~~DTg~~fpeT~~~~~~~~~~-~gl~i 166 (463)
+.+...+...++ .+.|++.+ .-|--+| +-+.+.+.+. ...++||...+.....-++.+.++ ||++.
T Consensus 86 ~~l~~f~~~~~~~~~lVaHNa~~FD~~fL~~~~~r~~~~~~~~~~~iDtl~l~r~~~~~L~~l~~~~~~~~~ 157 (177)
T cd06136 86 NLIKLFLRRQPKPICLVAHNGNRFDFPILRSELERLGTKLPDDILCVDSLPAFRELDQSLGSLYKRLFGQEP 157 (177)
T ss_pred HHHHHHHHhcCCCCEEEEcCCcccCHHHHHHHHHHcCCCCCCCCEEEEeHHHHhhhHhhHHHHHHHHhCCCc
Confidence 444444554443 37899998 7997766 5555554332 356689876555544455666554 66664
No 426
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=21.08 E-value=4.3e+02 Score=20.95 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=37.4
Q ss_pred HHHHHcCCCeEE-EEEeCC-CCcHHHHHHHHHHHHHh-CCcEEEEcCChHHHHHHHHhcCCCCCC
Q 012452 128 EYAHLTGRPFRV-FSLDTG-RLNPETYRFFDEVEKHF-GIRIEYMFPDAVEVQALVRSKGLFSFY 189 (463)
Q Consensus 128 ~L~~~~~~~i~v-i~~DTg-~~fpeT~~~~~~~~~~~-gl~i~~~~p~~~~~~~~~~~~g~~~~~ 189 (463)
+++.....++.+ +|+..+ ..-|.+.+.++++.+.+ ++++..+. .....+...++|..+.|
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd--~~~~~e~a~~~~V~~vP 67 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMID--GALFQDEVEERGIMSVP 67 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEE--hHhCHHHHHHcCCccCC
Confidence 445555556442 344444 57899999999999988 46666664 23344555667665443
No 427
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=21.04 E-value=1.1e+02 Score=25.75 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=22.3
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG 414 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~ 414 (463)
+..|+.|.|..|++....|++- ++.|-.+|.-+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-------gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-------GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCcEEeehhc
Confidence 4568899999999877665542 35555555543
No 428
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=20.82 E-value=5.9e+02 Score=23.90 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=56.7
Q ss_pred cccCChhhHHHHHHHhccCCHHHHHHHHHHHcCCcEEEEechhHH-HHHH-HHHHHcC-----CCeEEEEEeC--CCCcH
Q 012452 79 EKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAED-VALI-EYAHLTG-----RPFRVFSLDT--GRLNP 149 (463)
Q Consensus 79 ~~~~~~~~~~~l~~~l~~~~a~eil~~~~~~~~~~i~vafSGGKD-S~vl-~L~~~~~-----~~i~vi~~DT--g~~fp 149 (463)
.+-.+..++..+...+....+.+.+..+... ...|.||-| ...| ++..... ...-||..|- ....+
T Consensus 92 ~~f~F~~~l~~vT~~l~~~~~~~~l~~~~~~-----~~~~~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~~~~~~~ 166 (222)
T PF05762_consen 92 RVFVFSTRLTEVTPLLRRRDPEEALARLSAL-----VQSFGGGTDIGQALREFLRQYARPDLRRTTVVIISDGWDTNDPE 166 (222)
T ss_pred EEEEEeeehhhhhhhhccCCHHHHHHHHHhh-----ccCCCCccHHHHHHHHHHHHhhcccccCcEEEEEecccccCChH
Confidence 3444555677777777666676666655322 235889999 4444 4554433 2356777886 34566
Q ss_pred HHHHHHHHHHHHhCCcEEEEcCCh
Q 012452 150 ETYRFFDEVEKHFGIRIEYMFPDA 173 (463)
Q Consensus 150 eT~~~~~~~~~~~gl~i~~~~p~~ 173 (463)
+..+.++++.++ +-++.++.|..
T Consensus 167 ~~~~~l~~l~~r-~~rviwLnP~~ 189 (222)
T PF05762_consen 167 PLAEELRRLRRR-GRRVIWLNPLP 189 (222)
T ss_pred HHHHHHHHHHHh-CCEEEEECCcc
Confidence 777777777754 45888998873
No 429
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=20.69 E-value=1.5e+02 Score=22.11 Aligned_cols=71 Identities=8% Similarity=0.034 Sum_probs=40.7
Q ss_pred EEEEecCCChhHHHhHHHHHHHHHHhcCCCeEEEEEEcCC---CcHHHHHHcCCCCCCCEEEEEeCCCcCeeecCCCCCC
Q 012452 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG---DQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRD 451 (463)
Q Consensus 375 lV~FyA~wC~~C~~~~p~l~~la~~~~~~~v~f~~VD~d~---~~~~l~~~~~~I~~~PTi~~f~~g~~~~~~y~gg~~~ 451 (463)
+..|+.+.|+.|+...-.++...- .+.+..+|... ...++. +..-...+|++. .+|. .- ..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i-----~~~~~~~~~~~~~~~~~~~~-~~~P~~~vP~l~--~~g~---~l-----~e 65 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV-----DYELVPVDLTKGEHKSPEHL-ARNPFGQIPALE--DGDL---KL-----FE 65 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC-----CcEEEEeCccccccCCHHHH-hhCCCCCCCEEE--ECCE---EE-----Ec
Confidence 445667779999887765555322 34455555432 114555 556678899875 3332 22 23
Q ss_pred HHHHHHHHHH
Q 012452 452 VDSLMAFVDA 461 (463)
Q Consensus 452 ~~~L~~fI~~ 461 (463)
...|.+||.+
T Consensus 66 s~aI~~yL~~ 75 (76)
T cd03053 66 SRAITRYLAE 75 (76)
T ss_pred HHHHHHHHhh
Confidence 4567777753
No 430
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=20.69 E-value=1.6e+02 Score=27.55 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCcEEEEechhHH-HHHH-HHHHHc------CCCeEEEEEeCC--CC--cH--HHHHHHHHHHHHhCCc
Q 012452 101 EIMDRALEKFGNDIAIAFSGAED-VALI-EYAHLT------GRPFRVFSLDTG--RL--NP--ETYRFFDEVEKHFGIR 165 (463)
Q Consensus 101 eil~~~~~~~~~~i~vafSGGKD-S~vl-~L~~~~------~~~i~vi~~DTg--~~--fp--eT~~~~~~~~~~~gl~ 165 (463)
+.|...++.-+ ...|++|||.. ..++ +|.... ..++.|+.+|.. .. -+ ......+.+.++++.+
T Consensus 9 ~~l~~~i~~~~-~~~i~lsgG~T~~~~~~~l~~~~~~~~~~~~~v~v~~~der~~v~~~~~~sn~~~~~~~l~~~~~~~ 86 (232)
T cd01399 9 ELIAELIREKP-PAVLGLATGSTPLGVYEELIELHKEGGLSFSNVTTFNLDEYVGLPPDHPQSYHYFMRENLFDHIDIK 86 (232)
T ss_pred HHHHHHHHhCC-CcEEEEcCCCCHHHHHHHHHHHHHhcCCcHHHeEEEeCceecCCCCCcchhHHHHHHHHhhccCCCC
Confidence 44555555533 46789999977 3444 454332 356899999955 22 22 2223345566666655
No 431
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=20.31 E-value=2.9e+02 Score=25.53 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=39.5
Q ss_pred EEEec-hhHHHHHHHHHHH---cCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEc
Q 012452 115 AIAFS-GAEDVALIEYAHL---TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF 170 (463)
Q Consensus 115 ~vafS-GGKDS~vl~L~~~---~~~~i~vi~~DTg~~fpeT~~~~~~~~~~~gl~i~~~~ 170 (463)
.|+-+ -||-+++..|+.. .+.++-++.+||-+ ....+.++.+++.+|+++....
T Consensus 6 lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R--~ga~eQL~~~a~~l~vp~~~~~ 63 (196)
T PF00448_consen 6 LVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR--IGAVEQLKTYAEILGVPFYVAR 63 (196)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS--THHHHHHHHHHHHHTEEEEESS
T ss_pred EECCCCCchHhHHHHHHHHHhhccccceeecCCCCC--ccHHHHHHHHHHHhccccchhh
Confidence 44555 5799988865544 37789999999886 6777888999999999886654
Done!