RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012452
(463 letters)
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide
binding, thiosulfonate intermediate, oxidoreductase;
HET: ADX; 2.70A {Pseudomonas aeruginosa}
Length = 275
Score = 306 bits (785), Expect = e-102
Identities = 133/283 (46%), Positives = 185/283 (65%), Gaps = 8/283 (2%)
Query: 53 VRPLNAEPKRNDSVVPLAATLATPVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGN 112
+ P P + + D A L + SP +I+ A E FG+
Sbjct: 1 MLPFATIPAT-----ERNSAAQHQDPSPMSQPFDLPALASSLADKSPQDILKAAFEHFGD 55
Query: 113 DIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 172
++ I+FSGAEDV L++ A R +VFSLDTGRL+PETYRF D+V +H+GI I+ + PD
Sbjct: 56 ELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPD 115
Query: 173 AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIP 232
++ LV+ KGLFSFY DGH ECC +RK+ PL+R L G+RAW TGQR+DQSPGTRS++
Sbjct: 116 PRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTRSQVA 175
Query: 233 VVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCT 292
V+++D F E + K+NP++++ ++W ++R +++P NSLH +GYISIGCEPCT
Sbjct: 176 VLEIDGAFSTPEKPL---YKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGCEPCT 232
Query: 293 RPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGN 335
RPVLP QHEREGRWWWE+A KECGLH GN+ + + + +
Sbjct: 233 RPVLPNQHEREGRWWWEEATHKECGLHAGNLISKALEHHHHHH 275
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked
complex, oxidoreductase; 3.00A {Escherichia coli}
Length = 252
Score = 296 bits (760), Expect = 4e-99
Identities = 65/260 (25%), Positives = 111/260 (42%), Gaps = 20/260 (7%)
Query: 65 SVVPLAATLATPVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFS-GAED 123
S + L A P +++ + ELE + AL+ + ++ S G +
Sbjct: 2 SKLDLNALNELPKVDRIL---ALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQA 58
Query: 124 VALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSK 183
+ + V DTG L PETYRF DE+ + ++ R
Sbjct: 59 AVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYG 118
Query: 184 GLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFE 241
L+ +G ++ + KV P+ RALK L + W G R++QS +R+ +PV+ +
Sbjct: 119 KLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSG-SRANLPVLAIQR--- 174
Query: 242 GLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHE 301
+ K P+ + I+ +L+ + + L +GY+S+G TR PG E
Sbjct: 175 -------GVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAE 227
Query: 302 REGRWWWEDAKAKECGLHKG 321
E R++ +ECGLH+G
Sbjct: 228 EETRFFGL---KRECGLHEG 244
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS
reductase, oxidoreductase; HET: A3P; 2.10A
{Saccharomyces cerevisiae}
Length = 261
Score = 259 bits (663), Expect = 2e-84
Identities = 64/249 (25%), Positives = 108/249 (43%), Gaps = 21/249 (8%)
Query: 84 EEDFEQFAKELEN-ASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAH---LTGRPFRV 139
+E + + ++L +P EI+ ++ F + G + I+ +
Sbjct: 14 QEQLDHWNEQLIKLETPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEKYYMPEL 73
Query: 140 FSLDTGRLNPETYRFFDEVEKHFG----IRIEYMFPDAVEVQALVRSKGLFSFYEDGHQE 195
+DT P+T +E+EK + I PD E +A SK +E +
Sbjct: 74 LFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDDK 133
Query: 196 CCRVRKVRPLRRALKG--LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKW 253
+ KV P RA K + A TG+RK Q RS++ ++++D + ++K
Sbjct: 134 YDYLAKVEPAHRAYKELHISAVFTGRRKSQGS-ARSQLSIIEIDEL--------NGILKI 184
Query: 254 NPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKA 313
NP+ N + ++ +VP N L GY SIG T+PV G+ ER GRW +
Sbjct: 185 NPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRWKGKA--K 242
Query: 314 KECGLHKGN 322
ECG+H+ +
Sbjct: 243 TECGIHEAS 251
>1sur_A PAPS reductase; assimilatory sulfate reduction,
3-phospho-adenylyl-sulfate reductase, oxidoreductase;
2.00A {Escherichia coli} SCOP: c.26.2.2
Length = 215
Score = 247 bits (632), Expect = 2e-80
Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 17/227 (7%)
Query: 65 SVVPLAATLATPVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFS-GAED 123
S + L A P +++ + ELE + AL+ + ++ S G +
Sbjct: 1 SKLDLNALNELPKVDRIL---ALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQA 57
Query: 124 VALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSK 183
+ + V DTG L PETYRF DE+ + ++ R
Sbjct: 58 AVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYG 117
Query: 184 GLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFE 241
L+ +G ++ + KV P+ RALK L + W G R++QS +R+ +PV+ +
Sbjct: 118 KLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSG-SRANLPVLAIQ---- 172
Query: 242 GLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGC 288
+ K P+ + I+ +L+ + + L +GY+S+G
Sbjct: 173 ------RGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGD 213
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase,
nucleotide-binding; HET: FAD; 1.90A {Saccharomyces
cerevisiae}
Length = 306
Score = 171 bits (434), Expect = 5e-50
Identities = 42/274 (15%), Positives = 84/274 (30%), Gaps = 22/274 (8%)
Query: 82 EGEEDFEQFAKELENASPLEIMDRALEKFG---NDIAIAFSGAED--VALIEYAHLTGRP 136
+ + +E + ++ ++ +I+ +++G +D V L+ Y
Sbjct: 21 DQKSQIIASTQEAIRLTRKYLLSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEY 80
Query: 137 FRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQEC 196
F + + ++ + F I E FP + S YE Q
Sbjct: 81 FFIKAQNSQFDFEFQSFPMQRLPTVF-IDQEETFPTLENFVLETSERYCLSLYESQRQSG 139
Query: 197 CRVRKVRPLRRALK---GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKW 253
V R +K A + G R P + P+ + D ++
Sbjct: 140 ASVNMADAFRDFIKIYPETEAIVIGIRHTD-PFGEALKPIQRTDS-------NWPDFMRL 191
Query: 254 NPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRP-----VLPGQHEREGRWWW 308
P+ + +IW+FL + PI L+ +G+ SIG + P W
Sbjct: 192 QPLLHWDLTNIWSFLLYSNEPICGLYGKGFTSIGGINNSLPNPHLRKDSNNPALHFEWEI 251
Query: 309 EDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASE 342
A K+ + + + +
Sbjct: 252 IHAFGKDAEGERSSAINTSPISVVDKERFSKYHD 285
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein,
rossmann- like fold, APO-form, extended loop region;
HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A*
3g6k_A*
Length = 308
Score = 158 bits (399), Expect = 7e-45
Identities = 37/291 (12%), Positives = 83/291 (28%), Gaps = 18/291 (6%)
Query: 65 SVVPLAATLATPVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFG---NDIAIAFSGA 121
L L + + + + N + +++ K+ +I+ +++G
Sbjct: 9 DAAELCYNLTSSYLQIAAESDSIIAQTQRAINTTKSILINETFPKWSPLNGEISFSYNGG 68
Query: 122 ED-VALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE-VQAL 179
+D L+ + + L + + + +RF I + F ++
Sbjct: 69 KDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEET 128
Query: 180 VRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPV 239
L + D + + +A + G R P P+ + D
Sbjct: 129 SLRYSLSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHTD-PFGEHLKPIQKTDA- 186
Query: 240 FEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRP----- 294
+ P+ + +IW+FL + PI L+ G+ S+G T P
Sbjct: 187 ------NWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLGNVEETLPNPHLR 240
Query: 295 VLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASEAVA 345
+ + WE + A + +
Sbjct: 241 KDKNSTPLKLNFEWEIENRYKHNEVTKAEPIPIADEDLVKIENLHEDYYPG 291
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 82.0 bits (203), Expect = 5e-19
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPT 431
L+ YAPWC C+ +E Y L K G + + K D + + ++ FPT
Sbjct: 27 DVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKM--DATANDITNDQYKVEGFPT 84
Query: 432 ILFFPK-HSSKPIKYPSERRDVDSLMAFVD 460
I F P PIK+ RD++ L F+D
Sbjct: 85 IYFAPSGDKKNPIKFEGGNRDLEHLSKFID 114
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 79.7 bits (197), Expect = 3e-18
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 336 GAGNASEAVADIFNSQ-NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYV 394
G+ +S AV+ +++S +++ L + WLV YAPWC CQ + +
Sbjct: 1 GSSGSSGAVSGLYSSSDDVIELTPSNFNREVIQSD--GLWLVEFYAPWCGHCQRLTPEWK 58
Query: 395 ELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 454
+ A L VKVG AD Q + +Q FPTI F + +KP Y R ++
Sbjct: 59 KAATALKDV-VKVGAVNADKHQSLGGQYGVQ--GFPTIKIFGANKNKPEDYQGG-RTGEA 114
Query: 455 LMAFV 459
++
Sbjct: 115 IVDAA 119
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 78.9 bits (195), Expect = 6e-18
Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGN----GVKVGKFRADGDQKEYAKQKLQLGS 428
V+ Y PW + A + +L+ + + + + ++
Sbjct: 35 DVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVS--G 92
Query: 429 FPTILFFPK-HSSKPIKYPSERRDVDSLMAFV 459
FPT+ ++ + +P +Y + R + + +FV
Sbjct: 93 FPTMRYYTRIDKQEPFEYSGQ-RYLSLVDSFV 123
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 77.8 bits (192), Expect = 1e-17
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNG----VKVGKFRADGDQKEYAKQKLQLGS 428
L+ YAPWC C+A+ Y EL A + V + K A + ++
Sbjct: 27 DVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPD-----EIQG 81
Query: 429 FPTILFFPK-HSSKPIKYPSERRDVDSLMAFVD 460
FPTI +P +P+ Y R V+ L+ F+
Sbjct: 82 FPTIKLYPAGAKGQPVTYSGS-RTVEDLIKFIA 113
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 74.7 bits (184), Expect = 2e-16
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 10/125 (8%)
Query: 337 AGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVEL 396
+G++ + ++ + LN N ++ L+ YAPWC C+ Y ++
Sbjct: 3 SGSSGDDDLEVKEENGVWVLND---GNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKI 59
Query: 397 ADKLAGNG--VKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 454
A L N + V K D K + +PTI K + + Y R +
Sbjct: 60 ASTLKDNDPPIAVAKI--DATSASMLASKFDVSGYPTIKILKK--GQAVDYDGS-RTQEE 114
Query: 455 LMAFV 459
++A V
Sbjct: 115 IVAKV 119
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 73.9 bits (182), Expect = 4e-16
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 430
+ W++ YAPWC CQ ++ + A+ V + K D ++ + + + P
Sbjct: 22 EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKV--DVTEQPGLSGRFIINALP 79
Query: 431 TILFFPKHSSKPIKYPSERRDVDSLMAFVD 460
TI + +Y R + F+
Sbjct: 80 TIYHCKD--GEFRRYQGP-RTKKDFINFIS 106
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 78.6 bits (193), Expect = 1e-15
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 368 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 427
+EPWLV +APW +A+ + + L G +KVG D E +
Sbjct: 452 ASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ-LKVGT--LDCTIHEGLCNMYNIQ 508
Query: 428 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 460
++PT + F + S +Y + ++ F++
Sbjct: 509 AYPTTVVFNQ--SSIHEYEGH-HSAEQILEFIE 538
Score = 70.9 bits (173), Expect = 3e-13
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 430
+ W+V YAPW Q + LA + G V+ GK D QK + ++P
Sbjct: 675 KTHWVVDFYAPWSGPSQNFAPEFELLARMIKGK-VRAGK--VDCQAYPQTCQKAGIKAYP 731
Query: 431 TILFFPKHSSKPIKYPSER--RDVDSLMAFVD 460
++ + +K + + RD ++ A +
Sbjct: 732 SVKLYQYERAKKSIWEEQINSRDAKTIAALIY 763
Score = 67.5 bits (164), Expect = 4e-12
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR 411
++V+L + L + E W+V Y+PW Q + + +A L G + VG
Sbjct: 544 SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL-INVGS-- 600
Query: 412 ADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER---RDVDSLMAFVD 460
D Q + + +P I F+P+ SSK +Y S RD SL ++
Sbjct: 601 VDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGL 652
Score = 62.1 bits (150), Expect = 2e-10
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 372 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 431
E W V Y+P + ++ E A ++ G +++G D+ + + S+P+
Sbjct: 134 ELWFVNFYSPGSSHSHDLAPTWREFAKEVDGL-LRIGAVNCGDDRMLCRMKGVN--SYPS 190
Query: 432 ILFFPKHSSKPIKYPSERRDVDSLMAFV 459
+ F +KY + R +SL+AF
Sbjct: 191 LFIFRS-GMAAVKYNGD-RSKESLVAFA 216
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 71.9 bits (177), Expect = 1e-15
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEYAKQKLQLGS 428
+ + YAPWC C+ + ++ EL+ K VK+ + ++ +K ++
Sbjct: 21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVR--G 78
Query: 429 FPTILFFPKHSSKPIKYPSERRDVDSLMAFV 459
+PT+L F + K ++ RD+DSL FV
Sbjct: 79 YPTLLLF-RGGKKVSEHSGG-RDLDSLHRFV 107
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 77.6 bits (190), Expect = 2e-15
Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 9/120 (7%)
Query: 341 SEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKL 400
EAVA +V L ++ + L +APWC C+ M YV+ A+ L
Sbjct: 6 QEAVAP--EDSAVVKLAT---DSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETL 60
Query: 401 AGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK-HSSKPIKYPSERRDVDSLMAFV 459
+ + + D + + + + FP++ F + I Y R ++++ F+
Sbjct: 61 VEKNITLAQI--DCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGP-RTAEAIVQFM 117
Score = 73.3 bits (179), Expect = 4e-14
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 372 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 431
+ LV+ YAPWC C+ + +Y ELAD A V + D + + ++ +PT
Sbjct: 377 KDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIE--GYPT 434
Query: 432 ILFFPK-HSSKPIKYPSERRDVDSLMAFVD 460
I+ +P S+ + Y R +DSL F+
Sbjct: 435 IVLYPGGKKSESVVYQGS-RSLDSLFDFIK 463
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 70.8 bits (174), Expect = 4e-15
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 372 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEYAKQKLQLGSF 429
+ LV YAPWC C+A+ Y + A KL G +++ K D ++ Q+ + +
Sbjct: 25 KYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKV--DATEESDLAQQYGVRGY 82
Query: 430 PTILFFPK-HSSKPIKYPSERRDVDSLMAFV 459
PTI FF ++ P +Y + R+ D ++ ++
Sbjct: 83 PTIKFFRNGDTASPKEYTAG-READDIVNWL 112
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 76.0 bits (186), Expect = 5e-15
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG-VKVGKFRADGDQKEYAKQKLQLGSF 429
+ L+ YAPWC C+ +E Y EL +KL+ + + + K D + ++ F
Sbjct: 370 NKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKM--DATANDVP-SPYEVRGF 426
Query: 430 PTILFFPK-HSSKPIKYPSERRDVDSLMAFVD 460
PTI F P P KY R++ ++++
Sbjct: 427 PTIYFSPANKKLNPKKYEGG-RELSDFISYLQ 457
Score = 73.7 bits (180), Expect = 2e-14
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 5/109 (4%)
Query: 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR 411
+++ L E+ LV +APWC + + Y A +L G V + K
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI-VPLAKV- 59
Query: 412 ADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 460
D K + +PT+ F + + Y R D +++ +
Sbjct: 60 -DCTANTNTCNKYGVSGYPTLKIF-RDGEEAGAYDGP-RTADGIVSHLK 105
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 70.1 bits (172), Expect = 9e-15
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG---VKVGKFRADGDQKEYAKQKLQLG 427
++ W+V YAPWC C+ +E + A ++ VK+ A + A + +
Sbjct: 25 EDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDAT-VNQVLA-SRYGIR 82
Query: 428 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 459
FPTI F K P+ Y R +++
Sbjct: 83 GFPTIKIFQK-GESPVDYDGG-RTRSDIVSRA 112
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 74.0 bits (181), Expect = 1e-14
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSF 429
++ V YAPWC C+ + + +L + + + + K D E K+ SF
Sbjct: 267 KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKM--DSTANEVEAVKVH--SF 322
Query: 430 PTILFFPKHS-SKPIKYPSERRDVDSLMAFVD 460
PT+ FFP + I Y E R +D F++
Sbjct: 323 PTLKFFPASADRTVIDYNGE-RTLDGFKKFLE 353
Score = 44.3 bits (104), Expect = 5e-05
Identities = 8/92 (8%), Positives = 22/92 (23%), Gaps = 4/92 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNG-VKVGKFRADGDQKEYAKQKLQLGSFPT 431
+++ ++ A+ G +Q+ L+ P
Sbjct: 137 THILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPA 196
Query: 432 ILFFP--KHSSKPIKYPSERRDVDSLMAFVDA 461
+ + +K E + + F
Sbjct: 197 VRLITLEEEMTKYKPESEE-LTAERITEFCHR 227
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 72.2 bits (177), Expect = 2e-14
Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 10/121 (8%)
Query: 341 SEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKL 400
SE ++ ++ LN N ++ L+ YAPWC C+ Y ++A+ L
Sbjct: 5 SEDDLEVKEENGVLVLND---ANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANIL 61
Query: 401 AGNG--VKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAF 458
+ V K D + + +PTI K + + Y R + ++A
Sbjct: 62 KDKDPPIPVAKI--DATSASVLASRFDVSGYPTIKILKK--GQAVDYEGS-RTQEEIVAK 116
Query: 459 V 459
V
Sbjct: 117 V 117
Score = 66.4 bits (162), Expect = 1e-12
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 362 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQKEY 419
EN + + + LV YAPWC C+ + Y + A +L+ + + K A +
Sbjct: 138 ENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLA 197
Query: 420 AKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 459
+ + +PT+ F K +P Y R+ ++ ++
Sbjct: 198 KRFDVS--GYPTLKIFRK--GRPYDYNGP-REKYGIVDYM 232
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 72.7 bits (178), Expect = 4e-14
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 362 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA-----GNGVKVGKFRADGDQ 416
EN+ + + + LV YA WC+F Q + + E +D + N V + D
Sbjct: 13 ENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCD-QH 71
Query: 417 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 459
+ A Q+ ++ +PT+ F +Y + R V +L ++
Sbjct: 72 SDIA-QRYRISKYPTLKLFRNGMMMKREYRGQ-RSVKALADYI 112
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 65.8 bits (161), Expect = 2e-13
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 430
+ W+V YAPWC CQ + LA + G V+ GK + QK + ++P
Sbjct: 21 KTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK-VRAGKVDCQ-AYPQTC-QKAGIKAYP 77
Query: 431 TILFFP---KHSSKPIKYPSERRDVDSLMAFVDA 461
++ + S + + RD ++ A +
Sbjct: 78 SVKLYQYERAKKSIWEEQINS-RDAKTIAALIYG 110
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 68.9 bits (168), Expect = 2e-13
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEYAKQKLQLGS 428
+ W V +A WC C A ++ LA+ + + + + + +
Sbjct: 30 RSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPG 89
Query: 429 FPTILFF--PKHSSKPIKYPSERRDVDSLMAFV 459
FPT+ FF + +P DV +L +
Sbjct: 90 FPTVRFFXAFTXNGSGAVFPVAGADVQTLRERL 122
Score = 42.7 bits (100), Expect = 1e-04
Identities = 12/95 (12%), Positives = 29/95 (30%), Gaps = 10/95 (10%)
Query: 368 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 427
+ +E ++ + E+A L+ + V R + + K +
Sbjct: 154 RNNEEYLALIFEXGGSYLAR-------EVALDLSQHK-GVAVRRVLNTEANVVR-KFGVT 204
Query: 428 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462
FP+ + + + P A++ L
Sbjct: 205 DFPSCYLLFR-NGSVSRVPVLMESRSFYTAYLQRL 238
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 68.4 bits (166), Expect = 1e-12
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEYAKQKLQLGS 428
W V +A WC A ++ ELA+ + + + + ++ +
Sbjct: 30 SSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAG 89
Query: 429 FPTILFFPK--HSSKPIKYPSERRDVDSLMAFV 459
FPT+ FF + P +V +L +
Sbjct: 90 FPTVRFFQAFTKNGSGATLPGAGANVQTLRMRL 122
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 66.2 bits (161), Expect = 2e-12
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 374 WLVVLYAPWCQFCQAMEGSYVELADKLAGNG------VKVGKFRADGDQKEYAKQKLQLG 427
LV + + E + LA+ A + V + + + + K KL
Sbjct: 25 VLVKFDTQYPYGEKQDE--FKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKE 82
Query: 428 SFPTILFFPK-HSSKPIKYPSERRDVDSLMAFVD 460
S+P F P+ Y V ++ ++
Sbjct: 83 SYPVFYLFRDGDFENPVPYTGA-VKVGAIQRWLK 115
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 65.5 bits (159), Expect = 5e-12
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 16/104 (15%)
Query: 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 430
LV YAPWC C+ + ++ + A +L G V+V D ++ + K + FP
Sbjct: 35 NYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV-VQVAAVNCDLNKNKALCAKYDVNGFP 93
Query: 431 TILFFPKHSSKPIKYPSER---------------RDVDSLMAFV 459
T++ F K R + ++ F
Sbjct: 94 TLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFS 137
Score = 42.8 bits (100), Expect = 1e-04
Identities = 5/87 (5%), Positives = 17/87 (19%), Gaps = 11/87 (12%)
Query: 374 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 433
Y+ + + + + ++
Sbjct: 188 GKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDK-----------SKLV 236
Query: 434 FFPKHSSKPIKYPSERRDVDSLMAFVD 460
F K +Y + + + F+
Sbjct: 237 VFDADKDKFWEYEGNSINKNDISKFLR 263
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 63.1 bits (152), Expect = 7e-11
Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 10/116 (8%)
Query: 352 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG------- 404
++V L+ + R PW+V+ Y C C+ ++ + A L
Sbjct: 24 SVVDLSGDDFSRVHR-VAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQI 82
Query: 405 VKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 460
+ K + P + FF S ++ +
Sbjct: 83 ATAAAVNCASEVDLCRKYDIN--FVPRLFFFYPRDSCRSNEECGTSSLEHVAFENS 136
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain,
heterodimer, pyrophosphate, G protein; HET: GDP AGS;
2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Length = 325
Score = 61.7 bits (149), Expect = 1e-10
Identities = 51/224 (22%), Positives = 86/224 (38%), Gaps = 34/224 (15%)
Query: 92 KELENASPLEIMDRALEKFGNDIAIAFSGAED----VALIEYAHLTGR-PFRVFSLDTGR 146
K+LE S + I+ +F N + +S +D + L A G+ PF V +DT
Sbjct: 29 KQLEAES-IHIIREVAAEFDN-PVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRW 86
Query: 147 LNPETYRFFDEVEKHFGIRIEYMF-PDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPL 205
E YRF D++ + G+ + PD V +G+ F G + + K L
Sbjct: 87 KFQEMYRFRDQMVEEMGLDLITHINPDGVA-------QGINPF-THGSAKHTDIMKTEGL 138
Query: 206 RRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWN--------- 254
++AL G A G R+D+ +R++ V + WN
Sbjct: 139 KQALDKHGFDAAFGGARRDEEK-SRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKG 197
Query: 255 ------PVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCT 292
P++N DIW ++ +PI L+ + + T
Sbjct: 198 ESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAAERDVIEKNGT 241
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 60.1 bits (145), Expect = 4e-10
Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 12/96 (12%)
Query: 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLA-------GNGVKVGKFRADGDQKEYAKQK 423
+ L + Y + + + L + D ++ +K
Sbjct: 27 KYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVM--VDAKKEAKLAKK 84
Query: 424 LQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 459
L ++ + I++ E D L+ F+
Sbjct: 85 LGFDEEGSLYVL--KGDRTIEFDGE-FAADVLVEFL 117
Score = 33.1 bits (75), Expect = 0.19
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 9/101 (8%)
Query: 359 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE 418
+ + ++ ++ + ++ E A+ KF A D+
Sbjct: 129 NSKLEVQAFERIEDQIKLIGFFK--SEESEYYKAFEEAAEHFQPYI----KFFATFDKGV 182
Query: 419 YAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 459
K L + F+ +PI P + + L+ FV
Sbjct: 183 AKKLSL---KMNEVDFYEPFMDEPIAIPDKPYTEEELVEFV 220
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 59.2 bits (143), Expect = 8e-10
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 362 ENLARLDHRQEPWLVVLYAPWCQFC------QAMEGSYVELADKLAGNGVKVGKFRADGD 415
+N + + E ++ + P + E A L GV G D +
Sbjct: 21 KNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLV--DSE 78
Query: 416 QKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 459
+ +KL L +I F + + I+Y E D+L+ F+
Sbjct: 79 KDAAVAKKLGLTEEDSIYVFKED--EVIEYDGE-FSADTLVEFL 119
Score = 32.7 bits (74), Expect = 0.22
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 13/103 (12%)
Query: 359 TGMENLARLDHRQEPWLVVLY--APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ 416
G L ++ ++ ++ Y + +A + E A++ F A D
Sbjct: 131 EGERELQAFENIEDEIKLIGYFKNKDSEHYKA----FKEAAEEFHPYI----PFFATFDS 182
Query: 417 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 459
K K L I F+ +P+ P + + ++ FV
Sbjct: 183 KVAKKLTL---KLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFV 222
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 4e-09
Identities = 93/548 (16%), Positives = 147/548 (26%), Gaps = 235/548 (42%)
Query: 9 NSISSSSFALTSSSNDIKVSQIGSFR---LVDRAHVASTSL----SQRRSLVRPLNAEPK 61
++ S+ L+ GS LV T+ SQ +
Sbjct: 2 DAYSTRPLTLSH----------GSLEHVLLV------PTASFFIASQLQ----------- 34
Query: 62 RNDSVVPLAATLATPVAEKVEGEEDFEQFAKELENASPLEIMDR---------------- 105
+ L P E FA + E +P E++ +
Sbjct: 35 --EQ---FNKILPEPT----------EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 106 -------ALEKF------GNDI---AIAFSGAEDVALIE--------YA--HLTGRP--- 136
L +F GNDI A D L++ + RP
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 137 ------FRVFSLDTGRL--------NPETYRFFDEVEKHFGIRIEY-MFPDAVEVQALVR 181
FR +L N + Y F+E +R Y + V L++
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDY--FEE------LRDLYQTYHVLVG--DLIK 189
Query: 182 --SKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTR--SEIPV-- 233
++ L KV +GL W+ +P IP+
Sbjct: 190 FSAETLSELIRTTL----DAEKVFT-----QGLNILEWLEN--PSNTPDKDYLLSIPISC 238
Query: 234 -----VQ------------VDP-----VFEGLEGGVGSLVKWNPVAN-VKGNDIW-NFLR 269
+Q P +G G LV A + D W +F
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV----TAVAIAETDSWESFFV 294
Query: 270 TMDVPINSLHSQGYISIGCEPCTR--PVL---PGQHEREGRWWWEDAKAKECG-----LH 319
++ I L IG C P P ED+ G L
Sbjct: 295 SVRKAITVL-----FFIGVR-CYEAYPNTSLPPSIL--------EDSLENNEGVPSPMLS 340
Query: 320 -KG-NIKQEDAAVNG-NGNGAGNASEAVADIFNS-QNLVTLNRTGMENLARLDHRQEPWL 375
+Q VN N + ++ + N +NLV +G P
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEIS-LVNGAKNLVV---SG------------P-- 382
Query: 376 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLG-SFPTI 432
P Q++ G + L A +G+ DQ ++++KL+ F +
Sbjct: 383 -----P-----QSLYGLNLTLRKAKAPSGL---------DQSRIPFSERKLKFSNRFLPV 423
Query: 433 LFFPKHSS 440
P HS
Sbjct: 424 -ASPFHSH 430
Score = 42.0 bits (98), Expect = 4e-04
Identities = 41/271 (15%), Positives = 74/271 (27%), Gaps = 105/271 (38%)
Query: 92 KELENASPL--EIMDRA----LEKFGNDI-----------AIAFSGAEDVALIE-YAHLT 133
+L S ++ +RA + +G I I F G + + E Y+ +
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 134 GRPFR--------------------VFSLDTGRLNPET-----------YRFFDEVEKHF 162
F + G L+ T F++++
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS-ATQFTQPALTLMEKAAFEDLKSKG 1751
Query: 163 GIRIEYMFPDA---V-EVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITG 218
I + F A + E AL + S E V V R
Sbjct: 1752 LIPADATF--AGHSLGEYAALASLADVMSI-ESL------VEVVF--------YRGMTMQ 1794
Query: 219 QRKDQSPGTRSEIPVVQVDP--------------VFEGLEGGVGSLVKWNPVAN------ 258
+ RS ++ ++P V E + G LV+ + N
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE---IVNYNVENQ 1851
Query: 259 ---VKGN--------DIWNFLRTMDVPINSL 278
G+ ++ NF++ + I L
Sbjct: 1852 QYVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 52.6 bits (126), Expect = 4e-08
Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 6/134 (4%)
Query: 327 DAAVNGNGNGAGNASEAVADIFNSQNLVTLNRTG-MENLARLDHRQEPWLVVLYAPWCQF 385
+ + N G + F + T + E W V Y+P C
Sbjct: 69 EKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSH 128
Query: 386 CQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKY 445
C + ++ E A ++ G +++G D+ + + S+P++ F +KY
Sbjct: 129 CHDLAPTWREFAKEVDGL-LRIGAVNCGDDRM--LCRMKGVNSYPSLFIFRS-GMAAVKY 184
Query: 446 PSERRDVDSLMAFV 459
+ R +SL+AF
Sbjct: 185 NGD-RSKESLVAFA 197
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 50.6 bits (121), Expect = 7e-08
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK----QKLQLGS 428
W+V +A W CQ+ Y +L+ K G+ GK +
Sbjct: 28 TWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQ 87
Query: 429 FPTILFF 435
PT++ F
Sbjct: 88 LPTLILF 94
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 49.8 bits (119), Expect = 1e-07
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
P +++ C +C M+ ++ + G + R + ++ K PT
Sbjct: 28 PTIIMFKTDTCPYCVEMQKELSYVSKEREGK-FNIYYARLEEEKNIDLAYKYDANIVPTT 86
Query: 433 LFFPK 437
+F K
Sbjct: 87 VFLDK 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 1e-07
Identities = 59/397 (14%), Positives = 106/397 (26%), Gaps = 103/397 (25%)
Query: 86 DFEQFAKELENASPLEIMDRALEKFGNDIAI---------AFSGAEDVALIEYAHLTGRP 136
DFE + + L + + F ++ S E +I
Sbjct: 8 DFETGEHQYQYKDILSVF---EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 137 FRVFSLDTGRLNPET--YRFFDEV-EKHFG-----IRIEYMFPDAV------EVQALVRS 182
R+F T E +F +EV ++ I+ E P + + L
Sbjct: 65 LRLF--WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 183 KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEG 242
+F+ Y R++ LR+AL LR P V + +G
Sbjct: 123 NQVFAKYN-----VSRLQPYLKLRQALLELR------------------PAKNV--LIDG 157
Query: 243 LEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHER 302
+ G G K +V + MD I ++++ VL
Sbjct: 158 V-LGSG---KTWVALDVCLSY--KVQCKMDFKIF------WLNLKNCNSPETVLEML--- 202
Query: 303 EGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASEAVADIFNSQNLVTLNRTGME 362
+ + D H NIK + + + S+
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLR----------IHSIQAELRRLLKSKPYE-------N 245
Query: 363 NLARLDHRQEPWLVVLYAPWCQF---CQAMEGS-YVELADKLAGNGVKVGKFRADGDQKE 418
L L + Q W F C+ + + + ++ D L+ D
Sbjct: 246 CLLVLLNVQNAKA------WNAFNLSCKILLTTRFKQVTDFLSAATTT--HISLDHHSMT 297
Query: 419 YAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSL 455
++ L +P P E +
Sbjct: 298 LTPDEV-KSLLLKYL-----DCRPQDLPREVLTTNPR 328
Score = 34.4 bits (78), Expect = 0.082
Identities = 43/274 (15%), Positives = 72/274 (26%), Gaps = 96/274 (35%)
Query: 62 RNDSVVPLAATLATPVAEKVEGEEDFEQFAKELENASPLE---------IMDRALEKFGN 112
+ +P L+ + ++ D +L S +E I LE
Sbjct: 382 PPSAHIP-TILLSLIWFDVIK--SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE---- 434
Query: 113 DIAIAFSGAEDVAL----IE-YAHLTGRPFRVFSLDTGRLNPE-TYRFFDEVEKHFGIRI 166
+ + AL ++ Y + F D Y + H G
Sbjct: 435 ---LKVKLENEYALHRSIVDHY-----NIPKTFDSDDLIPPYLDQYFYS-----HIG--- 478
Query: 167 EY--MFPDAVEVQALVRSKGL-FSFYE-----DGHQECCRVRKVRPLRRALKGLRAWITG 218
+ + E L R L F F E D + + LK + +I
Sbjct: 479 -HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-GSILNTLQQLKFYKPYICD 536
Query: 219 QRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSL 278
DP +E L N I +FL ++ N +
Sbjct: 537 N-----------------DPKYERLV-----------------NAILDFLPKIEE--NLI 560
Query: 279 HSQGYISIGCEPCTRPV-LPGQHEREGRWWWEDA 311
S T + + E E +E+A
Sbjct: 561 CS---------KYTDLLRIALMAEDEA--IFEEA 583
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 49.7 bits (118), Expect = 2e-07
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS-FPT 431
P +V+++ WC C+A++ + E + + V + +++ + G P
Sbjct: 48 PLMVIIHKSWCGACKALKPKFAESTEISELSHNFV-MVNLEDEEEPKDEDFSPDGGYIPR 106
Query: 432 ILFF 435
ILF
Sbjct: 107 ILFL 110
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 50.4 bits (120), Expect = 3e-07
Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 8/106 (7%)
Query: 362 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG----VKVGKFRADGDQK 417
E + + A C+ CQ E E + + +K+ + ++
Sbjct: 13 ELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKE 72
Query: 418 EYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 463
E K + PTI+ I+Y ++ +
Sbjct: 73 ETEKYGVD--RVPTIVIEGD-KDYGIRY-IGLPAGLEFTTLINGIF 114
Score = 35.8 bits (82), Expect = 0.019
Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 11/114 (9%)
Query: 349 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVG 408
SQ L+ +E L +D + V C +C + + A LA + +
Sbjct: 116 VSQRKPQLSEKTLELLQVVD--IPIEIWVFVTTSCGYCPSAAVMAWDFA--LANDYITSK 171
Query: 409 KFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462
D + + ++ Q+ P I K ++ + ++ + ++ A+
Sbjct: 172 VI--DASENQDLAEQFQVVGVPKI-VINK---GVAEFVG-AQPENAFLGYIMAV 218
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 46.2 bits (110), Expect = 2e-06
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYV----ELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS 428
+V ++ C +CQ M ++V ++ L V D + + ++ ++
Sbjct: 21 MVMVYFHSEHCPYCQQMN-TFVLSDPGVSRLLEARFVVA-SVSVDTPEGQELARRYRVPG 78
Query: 429 FPTILFFPK 437
PT +F
Sbjct: 79 TPTFVFLVP 87
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila melanogaster}
SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 48.1 bits (114), Expect = 2e-06
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRAD----GDQKEYA-KQKLQLG 427
+V ++ + + + + K + K+
Sbjct: 37 VVKFDIASP--YGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDK 94
Query: 428 SFPTILFFPKHSSKPIKYPSER-RDVDSLMAFV 459
+FP+I F ++ + ++ PS +D+L AFV
Sbjct: 95 NFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFV 127
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 44.4 bits (105), Expect = 8e-06
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 363 NLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG----NGVKVGKFRADGDQKE 418
N A ++ + +P ++ LYA WC C+ E ++ D
Sbjct: 23 NQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVA 82
Query: 419 YAKQKLQLGSFPTILFFPK 437
K L + PTILFF
Sbjct: 83 LLK-HLNVLGLPTILFFDG 100
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 43.4 bits (103), Expect = 9e-06
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 360 GMENLARLDHRQE------PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 413
GM ++ L+ + C C M + + N V+ +
Sbjct: 1 GMNTFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENY--NYVEKIEILLQ 58
Query: 414 GDQKEYAKQKLQLGSFPTILFF 435
D +E A + + + PT+L F
Sbjct: 59 -DMQEIA-GRYAVFTGPTVLLF 78
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 43.5 bits (103), Expect = 1e-05
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 372 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 431
+ ++ +A WC C+ + + +++D AG+ V K D +Q + A Q++ + + PT
Sbjct: 34 KVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD-EQSQIA-QEVGIRAMPT 91
Query: 432 ILFF 435
+FF
Sbjct: 92 FVFF 95
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 43.1 bits (102), Expect = 1e-05
Identities = 11/63 (17%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
L+VL + W + C+A++ + ++++ + + V AD + E + + ++ + P
Sbjct: 23 LIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDAD-ENSEIS-ELFEISAVPYF 80
Query: 433 LFF 435
+
Sbjct: 81 III 83
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 43.2 bits (102), Expect = 2e-05
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
VVL + WC C+AM Y +LA++ V K + + K A ++L + PT
Sbjct: 39 PVVLDMFTQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTLA-KELGIRVVPTF 95
Query: 433 LFF 435
Sbjct: 96 KIL 98
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 41.9 bits (99), Expect = 2e-05
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 434
+ V +P C +C E + + V K D+ E A + L + P I
Sbjct: 5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDK-IDVEKIDIMVDR-EKA-IEYGLMAVPAIAI 61
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 42.3 bits (100), Expect = 2e-05
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
VVL + WC +AM Y +LA++ V K + + K A ++L + PT
Sbjct: 26 PVVLDMFTQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTLA-KELGIRVVPTF 82
Query: 433 LFF 435
Sbjct: 83 KIL 85
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 42.3 bits (100), Expect = 2e-05
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
LVVL +A WC C+ + VEL+ + A N V V K D + ++ A + + S PT
Sbjct: 22 LVVLDFFATWCGPCKMISPKLVELSTQFADN-VVVLKVDVD-ECEDIA-MEYNISSMPTF 78
Query: 433 LFF 435
+F
Sbjct: 79 VFL 81
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 42.4 bits (100), Expect = 4e-05
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 373 PWLVVLYAPWCQFCQAMEGS--YVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 430
V + WC C+ + L K + + ++K + ++P
Sbjct: 29 LLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYP 88
Query: 431 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 462
T+LF S + + D L+ V
Sbjct: 89 TLLFI-NSSGEVVYRLVGAEDAPELLKKVKLG 119
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 41.6 bits (98), Expect = 5e-05
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 7/61 (11%)
Query: 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 434
++ LY C + LA K K K + Q PTI
Sbjct: 27 IIHLYRSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNS-----CIQHYHDNCLPTIFV 79
Query: 435 F 435
+
Sbjct: 80 Y 80
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 40.8 bits (96), Expect = 8e-05
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
+V+ A WC C+ + + L++ AG V K D D + + + PT
Sbjct: 26 PIVVDFTATWCGPCKMIAPLFETLSNDYAGK-VIFLKV--DVDAVAAVAEAAGITAMPTF 82
Query: 433 LFF 435
+
Sbjct: 83 HVY 85
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 40.9 bits (96), Expect = 1e-04
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 434
L+ EL + +V AD +Q E + + FP L
Sbjct: 40 LLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAV--ADLEQSEAIGDRFNVRRFPATLV 97
Query: 435 F 435
F
Sbjct: 98 F 98
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 40.4 bits (95), Expect = 2e-04
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
LVV+ A WC C+ M + +LA K K D + K A ++ + + PT
Sbjct: 36 LVVIDFTASWCGPCRIMAPVFADLAKKFP--NAVFLKVDVD-ELKPIA-EQFSVEAMPTF 91
Query: 433 LFF 435
LF
Sbjct: 92 LFM 94
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 40.7 bits (95), Expect = 2e-04
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 372 EPWLVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 429
++VL C ++ + + L+ + D Y Q +
Sbjct: 22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDVD-QTAVYT-QYFDISYI 78
Query: 430 PTILFFPK 437
P+ +FF
Sbjct: 79 PSTVFFFN 86
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 39.2 bits (92), Expect = 2e-04
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
+ + +P C C A + E+A+++ V+V + + A + + + PTI
Sbjct: 4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDA-VEVEYINVMENP-QKA-MEYGIMAVPTI 60
Query: 433 LFF 435
+
Sbjct: 61 VIN 63
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 39.6 bits (93), Expect = 3e-04
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
LVV+ +A WC C+ + + EL++K K D +E A +K + + PT
Sbjct: 35 LVVVDFFATWCGPCKTIAPLFKELSEK---YDAIFVKVDVD-KLEETA-RKYNISAMPTF 89
Query: 433 LFF 435
+
Sbjct: 90 IAI 92
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 40.1 bits (94), Expect = 3e-04
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
P +V YA WC C+ + ELA + G + + K + ++E A + S P+I
Sbjct: 40 PAIVDFYADWCGPCKMVAPILDELAKEYDGQ-IVIYKVDTE-KEQELA-GAFGIRSIPSI 96
Query: 433 LFFPK 437
LF P
Sbjct: 97 LFIPM 101
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 39.3 bits (92), Expect = 3e-04
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 430
+V + C C+ ME + + V + ++ + E ++L P
Sbjct: 19 LSDAIVFFHKNLCPHCKNMEKVLDKFGARAP--QVAISSVDSE-ARPELM-KELGFERVP 74
Query: 431 TILFF 435
T++F
Sbjct: 75 TLVFI 79
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 39.6 bits (93), Expect = 3e-04
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
LV++ A WC C+ + + E A K G K D + K+ A + + + PT
Sbjct: 30 LVIIDFTASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVD-ELKDVA-EAYNVEAMPTF 85
Query: 433 LFF 435
LF
Sbjct: 86 LFI 88
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 39.8 bits (93), Expect = 3e-04
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
P +V YA WC C+ + EL+ + AG + + K D + + +Q S PTI
Sbjct: 53 PAIVDFYADWCGPCKMVAPILEELSKEYAGK-IYIYKVNVDKEPELARDFGIQ--SIPTI 109
Query: 433 LFFPK 437
F P
Sbjct: 110 WFVPM 114
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 39.8 bits (93), Expect = 3e-04
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAG------NGVKVGKFRADGDQKEYAKQKL 424
Q ++ +Y+ C C ++ + ++ G +G+ + K
Sbjct: 31 QGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGE--RELSAARLEMNKA 88
Query: 425 QLGSFPTILFF 435
+ PT++F+
Sbjct: 89 GVEGTPTLVFY 99
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 39.2 bits (92), Expect = 4e-04
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
L+V+ A WC C+ + + ELA K V K D + K A ++ + + PT
Sbjct: 28 LIVVDFTASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVD-ELKAVA-EEWNVEAMPTF 83
Query: 433 LFF 435
+F
Sbjct: 84 IFL 86
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 41.3 bits (97), Expect = 4e-04
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 370 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 429
P L ++ Q C + LA + G + K D ++ A + L +
Sbjct: 25 MTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ-FILAKLDCD-AEQMIA-AQFGLRAI 81
Query: 430 PTILFF 435
PT+ F
Sbjct: 82 PTVYLF 87
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 39.3 bits (92), Expect = 4e-04
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
++ +A WCQ C +L + + K D D+ E +K + S PTI
Sbjct: 44 VIVLYFFAKWCQACTMQSTEMDKLQKYYGKR-IYLLKV--DLDKNESLARKFSVKSLPTI 100
Query: 433 LFF 435
+
Sbjct: 101 ILL 103
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 38.8 bits (91), Expect = 4e-04
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
L V+ C C + ++ +++K + + A + + PT
Sbjct: 23 LAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVH-QCQGTA-ATNNISATPTF 78
Query: 433 LFF 435
FF
Sbjct: 79 QFF 81
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 39.8 bits (93), Expect = 5e-04
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
L+V+ +APW C M ELA +L V K A+ E + +K ++ S PT
Sbjct: 34 LLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAE-GVPEVS-EKYEISSVPTF 89
Query: 433 LFF 435
LFF
Sbjct: 90 LFF 92
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 38.8 bits (91), Expect = 5e-04
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
LV+ C CQ + EL + + ++K Q+ L P I
Sbjct: 24 ACLVMFSRKNCHVCQKVTPVLEELRLNYEES-FGFYYVDVE-EEKTLF-QRFSLKGVPQI 80
Query: 433 LFF 435
L+F
Sbjct: 81 LYF 83
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 38.9 bits (91), Expect = 5e-04
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
LVV+ A WC C+ + + +LA KL V K D D+ + + + PT
Sbjct: 40 LVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKV--DTDELKSVASDWAIQAMPTF 95
Query: 433 LFF 435
+F
Sbjct: 96 MFL 98
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 38.9 bits (91), Expect = 5e-04
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
+V++ A WC C+ + + E A K G K D D+ + +K + + PT
Sbjct: 38 VVIIDFTASWCGPCRFIAPVFAEYAKKFP--GAVFLKV--DVDELKEVAEKYNVEAMPTF 93
Query: 433 LFF 435
LF
Sbjct: 94 LFI 96
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 38.4 bits (90), Expect = 5e-04
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
L+V+ +A WC C+ + LA ++ V+ K D +E A K + + PT
Sbjct: 21 LIVVDFFAQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVD-QNEEAA-AKYSVTAMPTF 76
Query: 433 LFF 435
+F
Sbjct: 77 VFI 79
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 39.3 bits (92), Expect = 6e-04
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 372 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 431
+P +V+ Y+P C +C+AME + E A + + G+ + K +Q PT
Sbjct: 25 KPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS-AVFGRINIATNPWTAEKYGVQ--GTPT 81
Query: 432 ILFF 435
FF
Sbjct: 82 FKFF 85
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 38.5 bits (90), Expect = 6e-04
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
LV +A WC C E Y ++A+K G G+ D +QK K + + PT
Sbjct: 23 LVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK-AVFGRLNVDENQK--IADKYSVLNIPTT 79
Query: 433 LFF 435
L F
Sbjct: 80 LIF 82
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 38.9 bits (91), Expect = 6e-04
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 372 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 431
LV +APWC C+ + ELA AG +KV K + D+ + + S PT
Sbjct: 51 PLTLVDFFAPWCGPCRLVSPILEELARDHAGR-LKVVKV--NVDEHPGLAARYGVRSVPT 107
Query: 432 ILFF 435
++ F
Sbjct: 108 LVLF 111
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 38.0 bits (89), Expect = 6e-04
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
LVV+ A WC C+ ++ + L++K + V + D D ++ A + ++ S PT
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVD-DCQDVA-SESEVKSMPTF 77
Query: 433 LFF 435
FF
Sbjct: 78 QFF 80
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 38.7 bits (90), Expect = 7e-04
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNG----VKVGKFRADGDQKEYAK-QKLQLG 427
P L+V A WC C+A++ S + VK+ D + +
Sbjct: 31 PTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQD 90
Query: 428 SFPTILFF 435
P ++
Sbjct: 91 GIPAVVVV 98
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 38.2 bits (89), Expect = 8e-04
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 350 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 409
S +V N T L R+ LV +A WC CQ + +A+ V K
Sbjct: 2 SDPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANK--DVTFIK 59
Query: 410 FRADGDQKEYAKQKLQLGSFPTILFF 435
D D+ A + S P + F
Sbjct: 60 V--DVDKNGNAADAYGVSSIPALFFV 83
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 38.7 bits (90), Expect = 8e-04
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 375 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 434
++ LY C + LA K K K + + Y L PTI
Sbjct: 34 VIHLYRSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNSCIEHYHDNCL-----PTIFV 86
Query: 435 F 435
+
Sbjct: 87 Y 87
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 38.1 bits (89), Expect = 0.001
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
LVV+ A WC + ++ + L++K + V + D D ++ A + ++ S PT
Sbjct: 33 LVVVDFSATWCGPSKMIKPFFHSLSEKYS--NVIFLEVDVD-DCQDVA-SECEVKSMPTF 88
Query: 433 LFF 435
FF
Sbjct: 89 QFF 91
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 38.0 bits (88), Expect = 0.001
Identities = 8/86 (9%), Positives = 26/86 (30%), Gaps = 1/86 (1%)
Query: 351 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKF 410
N+ L T + ++E + C +C+ G+ + + + +
Sbjct: 9 DNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSE 68
Query: 411 RADGDQK-EYAKQKLQLGSFPTILFF 435
+ + + + + P +
Sbjct: 69 EPSQLNDLQAFRSRYGIPTVPGFVHI 94
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 38.6 bits (90), Expect = 0.001
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
P ++ +APWC C++ + E A + AG V+ K + + + + ++ S PTI
Sbjct: 57 PMVIDFWAPWCGPCRSFAPIFAETAAERAGK-VRFVKV--NTEAEPALSTRFRIRSIPTI 113
Query: 433 LFF 435
+ +
Sbjct: 114 MLY 116
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 37.3 bits (87), Expect = 0.001
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
LVV+ YA WC C+ + + +++ K D + + A QK ++ + PT+
Sbjct: 26 LVVVDFYATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVD-ELGDVA-QKNEVSAMPTL 81
Query: 433 LFF 435
L F
Sbjct: 82 LLF 84
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 38.2 bits (89), Expect = 0.001
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
P LV +APWC C+ M + A LAG V++ K D + ++ P
Sbjct: 66 PLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ-VRLAKI--DTQAHPAVAGRHRIQGIPAF 122
Query: 433 LFF 435
+ F
Sbjct: 123 ILF 125
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 37.9 bits (88), Expect = 0.002
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
+V+ A WC + + Y+EL++ + D + +++ ++ + PT
Sbjct: 48 IVLANFSARWCGPSRQIAPYYIELSENYP--SLMFLVIDVD-ELSDFS-ASWEIKATPTF 103
Query: 433 LFF 435
F
Sbjct: 104 FFL 106
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 37.8 bits (88), Expect = 0.002
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
+V+ A WC+ C ++ + + V + D D + + + PT
Sbjct: 42 SIVIKFGAVWCKPCNKIKEYFKNQLNYYYVTLVDI-----DVDIHPKLNDQHNIKALPTF 96
Query: 433 LFF 435
F+
Sbjct: 97 EFY 99
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 37.3 bits (87), Expect = 0.002
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
+V+ YA WC C+ M+ +L V+ K D + + A ++ ++ + PT
Sbjct: 32 KLVIDFYATWCGPCKMMQPHLTKLIQAYP--DVRFVKCDVD-ESPDIA-KECEVTAMPTF 87
Query: 433 LFF 435
+
Sbjct: 88 VLG 90
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 37.4 bits (87), Expect = 0.002
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
L V A WC C+ +E ++A + VK K AD + E K ++ PT
Sbjct: 39 LTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDAD-NNSEIV-SKCRVLQLPTF 94
Query: 433 LFF 435
+
Sbjct: 95 IIA 97
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 36.5 bits (85), Expect = 0.003
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 375 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
LV++ +A WC C+ + Y E + + K D D+ +K + S PT
Sbjct: 28 LVIVDFFAEWCGPCKRIAPFYEECSKTYT--KMVFIKV--DVDEVSEVTEKENITSMPTF 83
Query: 433 LFF 435
+
Sbjct: 84 KVY 86
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 36.2 bits (84), Expect = 0.003
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 430
LV +A C C+ + ELA G + K D + K ++ S P
Sbjct: 19 SGVQLVDFWATACGPCKMIAPVLEELAADYEGK-ADILKLDVDENPS--TAAKYEVMSIP 75
Query: 431 TILFF 435
T++ F
Sbjct: 76 TLIVF 80
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 36.1 bits (84), Expect = 0.003
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 372 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 431
E +V +A WC C + ELA+ V GK +D + + A + + S PT
Sbjct: 17 EIAVVDFWAEWCAPCLILAPIIEELAEDYP--QVGFGKLNSD-ENPDIA-ARYGVMSLPT 72
Query: 432 ILFF 435
++FF
Sbjct: 73 VIFF 76
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 36.1 bits (84), Expect = 0.003
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 372 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 431
LV +A WC C+ + + E+ + AG V V K D + + Q+ S PT
Sbjct: 21 GLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK-VTVAKVNIDDNPE--TPNAYQVRSIPT 77
Query: 432 ILFF 435
++
Sbjct: 78 LMLV 81
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 37.4 bits (86), Expect = 0.005
Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 7/89 (7%)
Query: 350 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELA---DKLAGNGVK 406
S+ L + + +D ++V P C +C + A K +
Sbjct: 115 SREETNLMDETKQAIRNIDQDVR--ILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKIL 172
Query: 407 VGKFRADGDQKEYAKQKLQLGSFPTILFF 435
+ + + + + P I+
Sbjct: 173 GDMV--EAIEYPEWADQYNVMAVPKIVIQ 199
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 35.8 bits (83), Expect = 0.005
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
LV +A WC C+ + E+A + G + V K D D+ + ++ S PT+
Sbjct: 20 LVLVDFWAEWCAPCRMIAPILEEIAKEYEGK-LLVAKL--DVDENPKTAMRYRVMSIPTV 76
Query: 433 LFF 435
+ F
Sbjct: 77 ILF 79
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 35.4 bits (81), Expect = 0.008
Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 375 LVVLYAPWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 433
L++ P C +C + G V + + + + PT +
Sbjct: 22 LLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFV 81
Query: 434 FF 435
Sbjct: 82 LM 83
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 35.0 bits (81), Expect = 0.008
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
P LV +A WC C+ M E A+ A V V K D + + + + S PT+
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADK-VTVAKLNVDENPE--TTSQFGIMSIPTL 75
Query: 433 LFF 435
+ F
Sbjct: 76 ILF 78
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 35.0 bits (81), Expect = 0.010
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
P LV +A WC C+ + S +A + +++ K + D+ K + S PT+
Sbjct: 25 PVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK-IEIVKL--NIDENPGTAAKYGVMSIPTL 81
Query: 433 LFF 435
+
Sbjct: 82 NVY 84
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 34.6 bits (80), Expect = 0.012
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 371 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 430
+ L +APWC + + EL ++ +K+ K D +Q+ K + S P
Sbjct: 17 EGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK-LKIVKIDVDENQE--TAGKYGVMSIP 73
Query: 431 TILFF 435
T+L
Sbjct: 74 TLLVL 78
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 34.5 bits (80), Expect = 0.013
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
P +V +APWC C+ + ELA + +G + V K D + + S PT+
Sbjct: 20 PVMVDFWAPWCGPCKLIAPVIDELAKEYSGK-IAVYKLNTDEAPG--IATQYNIRSIPTV 76
Query: 433 LFF 435
LFF
Sbjct: 77 LFF 79
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 34.6 bits (80), Expect = 0.014
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
P +V +A WC C+ + ++ K G V + K D D + A + ++ + PT+
Sbjct: 33 PVVVDFHAQWCGPCKILGPRLEKMVAKQHGK-VVMAKVDID-DHTDLA-IEYEVSAVPTV 89
Query: 433 LFF 435
L
Sbjct: 90 LAM 92
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 34.6 bits (80), Expect = 0.014
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
P LV +A WC CQ M A+ + +KV K D + K K++ P +
Sbjct: 27 PVLVYFWASWCGPCQLMSPLINLAANTYSDR-LKVVKLEIDPNPTTVKKYKVE--GVPAL 83
Query: 433 LFF 435
Sbjct: 84 RLV 86
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 34.2 bits (79), Expect = 0.015
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
P LV +APWC C+ + ELA + G VKV K D + + + S PT+
Sbjct: 21 PVLVDFWAPWCGPCRMIAPIIEELAKEYEGK-VKVVKVNVDENPN--TAAQYGIRSIPTL 77
Query: 433 LFF 435
L F
Sbjct: 78 LLF 80
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 35.3 bits (81), Expect = 0.015
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 17/75 (22%)
Query: 375 LVVLYAPWCQFCQAMEG---SYVELADKLAGNGVKVGKFRADGDQKEYA----------- 420
L + WC +C M+ E + V D QK +
Sbjct: 52 LFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMV---EVDFPQKNHQPEEQRQKNQEL 108
Query: 421 KQKLQLGSFPTILFF 435
K + ++ FP ++F
Sbjct: 109 KAQYKVTGFPELVFI 123
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 34.7 bits (80), Expect = 0.018
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
LV +A WC + + E+AD+ G + V K D + K ++ PT+
Sbjct: 42 AILVDFWAEWCGPAKMIAPILDEIADEYQGK-LTVAKLNIDQNPGTAPKYGIR--GIPTL 98
Query: 433 LFF 435
L F
Sbjct: 99 LLF 101
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 33.8 bits (78), Expect = 0.021
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
P LV +APWC C+ + E+A + +K K D + + S PTI
Sbjct: 21 PVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK-LKCVKLNTDESPN--VASEYGIRSIPTI 77
Query: 433 LFF 435
+ F
Sbjct: 78 MVF 80
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 34.3 bits (79), Expect = 0.023
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
P LV +A WC C+ + E+A + A + + V K D + + + Q+ S PT+
Sbjct: 32 PVLVDFWATWCGPCKMVAPVLEEIATERATD-LTVAKLDVDTNPE--TARNFQVVSIPTL 88
Query: 433 LFF 435
+ F
Sbjct: 89 ILF 91
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 33.8 bits (78), Expect = 0.025
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
LV +A WC C+ + E+AD+ G + V K D + K ++ PT+
Sbjct: 22 AILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQNPGTAPKYGIR--GIPTL 78
Query: 433 LFF 435
L F
Sbjct: 79 LLF 81
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 34.1 bits (78), Expect = 0.034
Identities = 11/104 (10%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 363 NLARLDHRQEPWLVVLYAPWCQFCQAMEG---SYVELADKLAGNGVKVGKFRADGDQKEY 419
++ ++ ++ + CQ + S + + + + + + + + Y
Sbjct: 36 ECGQMQNK--WLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRY 93
Query: 420 AKQKLQLGSFPTILFFPKHSSKPIK---YPSERRDVDSLMAFVD 460
Q +LG FP + + + + +D + F+
Sbjct: 94 I-QFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLG 136
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 33.9 bits (77), Expect = 0.042
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYV---ELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 429
P +V+ + CQ+ QA++ + E+ + + + + K +
Sbjct: 46 PLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIML-NLMHETTDKNLSPDG---QYV 101
Query: 430 PTILFF 435
P I+F
Sbjct: 102 PRIMFV 107
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 34.8 bits (81), Expect = 0.055
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 20/67 (29%)
Query: 129 YAHLTGRPFRVFSLDTGRL-----------NPETYRFFDEVEKHFGIRIEYM-FPDAVEV 176
Y H GR TGR + +++ + ++++F I + D E+
Sbjct: 447 YLHRIGR--------TGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYEEL 498
Query: 177 QALVRSK 183
+ +V++
Sbjct: 499 EKVVKNA 505
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 34.0 bits (78), Expect = 0.055
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
LV +A WC C+ + E+AD+ G + V K D + K ++ PT+
Sbjct: 32 AILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQNPGTAPKYGIR--GIPTL 88
Query: 433 LFF 435
L F
Sbjct: 89 LLF 91
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 33.9 bits (77), Expect = 0.071
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 373 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 432
+V +Y + C A+ S + LA + VK K +A A + PT+
Sbjct: 135 TIVVHIYEDGIKGCDALNSSLICLAAEYP--MVKFCKIKASNTG---AGDRFSSDVLPTL 189
Query: 433 LFF 435
L +
Sbjct: 190 LVY 192
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 31.6 bits (71), Expect = 0.16
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 381 PWCQFCQAMEGSYVELADKLAGNG----VKVGKFRADGDQKEYAKQKLQLGSFPTILFF 435
WC C E E ++ +VG+ D ++ L++ + PT+L +
Sbjct: 41 SWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKY 99
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 31.5 bits (71), Expect = 0.41
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 371 QEPWLVV-LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 429
+ +VV +Y + C A+ S LA + VK K RA A +
Sbjct: 119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--MVKFCKIRAS---NTGAGDRFSSDVL 173
Query: 430 PTILFF 435
PT+L +
Sbjct: 174 PTLLVY 179
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 31.5 bits (70), Expect = 0.50
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 368 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 427
H ++ + A WC CQ + + D++ V+ Q + + +
Sbjct: 194 AHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV--PYVECSPNGPGTPQAQEC-TEAGIT 250
Query: 428 SFPTILF 434
S+PT +
Sbjct: 251 SYPTWII 257
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.2 bits (73), Expect = 0.52
Identities = 20/132 (15%), Positives = 39/132 (29%), Gaps = 25/132 (18%)
Query: 126 LIEY--AHLTGRPFRV-FSLDTGRLNPET---YRFFDEVEKHFGIRI---EYMFPDAVEV 176
I Y +L GRP+ T + ++ + +H GIR+ E E
Sbjct: 860 FISYHNGNLKGRPYTGWVDSKTKEPVDDKDVKAKYETSILEHSGIRLIEPELFNGYNPEK 919
Query: 177 QALVRSKGL---FSFYE----------DGHQECCRVRKVRPLRRALKGLRAWITGQRKDQ 223
+ +++ + +E H + + ++ L T
Sbjct: 920 KEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKA 979
Query: 224 SPGTRS---EIP 232
R +IP
Sbjct: 980 LRFDRLVAGQIP 991
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor
covalently bound to inhibitor; HET: P3F; 1.78A
{Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A*
1cl2_A*
Length = 415
Score = 31.0 bits (71), Expect = 0.75
Identities = 3/34 (8%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 151 TYRFFDEVEKHFGIRIEYMFP-DAVEVQALVRSK 183
+ F ++ G+ + P ++ ++
Sbjct: 134 SQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPN 167
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET:
PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Length = 393
Score = 31.0 bits (71), Expect = 0.94
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 151 TYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSK 183
T+R+F +V G+ + ++ L++
Sbjct: 106 THRYFTKVANAHGVETSFTNDLLNDLPQLIKEN 138
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 29.3 bits (65), Expect = 0.97
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 376 VVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 434
+Y A WC CQ + + D++ V+ Q + + + S+PT +
Sbjct: 16 GTMYGAYWCPHCQDQKELFGAAFDQV--PYVECSPNGPGTPQAQ-ECTEAGITSYPTWII 72
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine
phosphonate; HET: IN5; 1.60A {Geobacillus
stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A*
2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A*
1ftx_A* 3uw6_A
Length = 388
Score = 30.5 bits (70), Expect = 1.1
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 96 NASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRV-FSLDTG--RL----N 148
AS A + IA+ ++ + + P +DTG RL
Sbjct: 86 GASRPADAALAAQ---QRIALTVFRSDWLEEASALYSGPFPIHFHLKMDTGMGRLGVKDE 142
Query: 149 PETYRFFDEVEKHFGIRIEYMF 170
ET R +E+H +E ++
Sbjct: 143 EETKRIVALIERHPHFVLEGLY 164
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent
enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A
{Escherichia coli} SCOP: c.67.1.3
Length = 386
Score = 30.2 bits (69), Expect = 1.6
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 151 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 183
+YR FD + K R+ ++ D ++A + K
Sbjct: 104 SYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEK 137
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
subunit OST6; oxidoreductase, active site loop, redox
state, membrane; HET: PG4; 1.30A {Saccharomyces
cerevisiae} PDB: 3g7y_A 3g9b_A*
Length = 178
Score = 29.2 bits (65), Expect = 1.7
Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 15/122 (12%)
Query: 342 EAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLY---------APWCQFCQAMEGS 392
+ + + + ++T+ +N L + +LY CQ C E +
Sbjct: 9 DDILQLKDDTGVITVT---ADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKT 65
Query: 393 YVELADKLAGNGVKVGK--FRADGDQKEYAKQKLQLGSFPTILFF-PKHSSKPIKYPSER 449
Y +AD + + F D ++ + L+L + P ++ + P S+K ++ +
Sbjct: 66 YHAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDLKLQNVPHLVVYPPAESNKQSQFEWKT 125
Query: 450 RD 451
Sbjct: 126 SP 127
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine
biosynthesis, transsulfurat lyase; HET: PLP; 2.30A
{Arabidopsis thaliana} SCOP: c.67.1.3
Length = 464
Score = 29.6 bits (67), Expect = 2.3
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 151 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 183
+ R +V G+ ++ + EV A + +
Sbjct: 184 SDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ 217
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase,
tricarboxylic acid cycle; 1.70A {Bacillus anthracis}
Length = 528
Score = 29.8 bits (67), Expect = 2.3
Identities = 16/72 (22%), Positives = 29/72 (40%)
Query: 147 LNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLR 206
L PE F E+ ++F R + ++ Q + + F E+ + + L
Sbjct: 21 LTPEALSFLKELHENFNERRIELLQKRMKKQQKIDAGEFPKFLEETKRIREADWTIAKLP 80
Query: 207 RALKGLRAWITG 218
+ L+ R ITG
Sbjct: 81 KDLEDRRVEITG 92
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC,
inhibitor, structural genom stockholm, structural
genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB:
2nmp_A* 3elp_B
Length = 403
Score = 29.4 bits (67), Expect = 2.6
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 151 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 183
T R+F +V FG++I ++ ++A + +
Sbjct: 118 TNRYFRQVASEFGLKISFVDCSKIKLLEAAITPE 151
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A
{Mycobacterium ulcerans} PDB: 3qi6_A*
Length = 392
Score = 29.4 bits (67), Expect = 2.9
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 151 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 183
T+R D+V + + + D V+A +R
Sbjct: 118 TFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPT 151
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis}
SCOP: c.67.1.3
Length = 331
Score = 29.0 bits (66), Expect = 3.3
Identities = 4/34 (11%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 151 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 183
T+ F+ + FG+ ++++ ++ ++
Sbjct: 50 THALFEHQLRKFGVEVDFIDMAVPGNIEKHLKPN 83
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 3.6
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 22/51 (43%)
Query: 79 EKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDV-ALIE 128
EK Q K+L+ +L+ + +D A A + + A +E
Sbjct: 18 EK--------QALKKLQA---------SLKLYADDSAPALA----IKATME 47
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 28.1 bits (62), Expect = 3.8
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 362 ENLARLDHRQEPWLVVLYAPWCQFCQAME 390
+ +P ++ C C+ ME
Sbjct: 38 LGMEYARQHNKPVMLDFTGYGCVNCRKME 66
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A
{Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A*
1ukj_A* 2o7c_A*
Length = 398
Score = 28.7 bits (65), Expect = 4.4
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 151 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 183
T+ F FG+++ ++ D ++A +
Sbjct: 117 TFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPA 150
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent
enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas
vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Length = 404
Score = 28.7 bits (65), Expect = 5.1
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 151 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 183
T+ F+ FGI+++++ EV+ ++
Sbjct: 114 THALFEHALTKFGIQVDFINTAIPGEVKKHMKPN 147
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba
histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A*
3aeo_A* 3aep_A*
Length = 389
Score = 28.3 bits (64), Expect = 5.2
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 151 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 183
T F FGI ++ + D +V+A +
Sbjct: 111 TVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix,
two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Length = 236
Score = 28.1 bits (62), Expect = 5.4
Identities = 22/139 (15%), Positives = 31/139 (22%), Gaps = 34/139 (24%)
Query: 86 DFEQFAKELENASPLE----IMDRALEKFGND-IAIAFSGAEDVAL-------------- 126
+ LE A + G D A V
Sbjct: 6 NLRSLIDMLEAAQDGHMIKIALRSFAHSCGYDRFAYLQKDGTQVRTFHSYPGPWESIYLG 65
Query: 127 ---------IEYAHLTGRPFRVFSLDT-GRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV 176
+ A F + R + RF DE H GIR P V
Sbjct: 66 SDYFNIDPVLAEAKRRRDVFFWTADAWPARGSSPLRRFRDEAISH-GIRCGVTIP----V 120
Query: 177 QALVRSKGLFSFYEDGHQE 195
+ S + +F +
Sbjct: 121 EGSYGSAMMLTFASPERKV 139
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel,
substrate channeling; HET: NAD; 1.70A {Pseudomonas SP}
SCOP: a.5.7.1 c.1.10.5
Length = 345
Score = 28.4 bits (64), Expect = 5.5
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 325 QEDAAVNGNGNGAGNAS-EAVADIFNSQNLVT 355
+ DA++ G G GAGNA E +
Sbjct: 222 RVDASLAGMGAGAGNAPLEVFIAVAERLGWNH 253
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 28.4 bits (63), Expect = 5.7
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 139 VFSLDTGRLNPETYRFFDEVEKHFGIRIE 167
+L G N + K + + +
Sbjct: 386 TLNLSIGFGNLINPHPKNSQSKEYALLLI 414
>3byq_A Uncharacterized protein DUF1185; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE PG4; 1.70A {Bordetella bronchiseptica
RB50} SCOP: d.79.9.1
Length = 193
Score = 27.6 bits (61), Expect = 6.4
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 193 HQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVD 237
H +R L +A + + + G R +PV +
Sbjct: 94 HGAVWHEAGGWAMRSVLGEPKAMVPAVKAVATAGYRMMVPVHYIH 138
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural
genomics, protein structure initiative; 2.04A
{Bacteroides vulgatus atcc 8482}
Length = 320
Score = 28.1 bits (63), Expect = 6.8
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 327 DAAVNGNGNGAGNAS-EAVADIFNSQNLVTLNRTGMENLAR 366
DA + G G GAGN E + N + + ++ + N+
Sbjct: 216 DATITGMGRGAGNLKMELLLTYLNKHHGLNVDFNVLGNIIT 256
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 28.0 bits (61), Expect = 9.5
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
Query: 72 TLATPVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAH 131
+L P+ K +G EL + + L+KF I GA+ H
Sbjct: 17 SLFVPLTVKPQGPSADGDVGAELTRPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLFH 76
Query: 132 LTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 171
FR + + + L+ + + +++ + +FP
Sbjct: 77 QAFISFRNYIMQSHSLDVDIHIVLNDICFGAA-HADDLFP 115
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent
enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB:
1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Length = 398
Score = 27.5 bits (62), Expect = 9.7
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 151 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 183
T+ F FGI + ++ E++A +R +
Sbjct: 116 THAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPE 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,068,463
Number of extensions: 438112
Number of successful extensions: 1521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1447
Number of HSP's successfully gapped: 161
Length of query: 463
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 366
Effective length of database: 3,993,456
Effective search space: 1461604896
Effective search space used: 1461604896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)