Query 012456
Match_columns 463
No_of_seqs 433 out of 3347
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 02:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2338 Transcriptional effect 100.0 3.8E-39 8.3E-44 315.8 19.7 371 46-457 116-494 (495)
2 PLN03144 Carbon catabolite rep 100.0 1.2E-36 2.7E-41 314.1 18.3 267 43-320 251-559 (606)
3 COG5239 CCR4 mRNA deadenylase, 99.9 1.8E-26 3.9E-31 217.9 8.2 255 46-321 30-324 (378)
4 TIGR03395 sphingomy sphingomye 99.9 3.7E-22 8E-27 192.7 20.0 212 47-295 1-245 (283)
5 PRK11756 exonuclease III; Prov 99.9 2.3E-22 5.1E-27 193.8 16.5 203 47-294 1-236 (268)
6 KOG0620 Glucose-repressible al 99.9 2E-22 4.4E-27 198.0 5.6 259 45-320 18-309 (361)
7 KOG3873 Sphingomyelinase famil 99.8 4.4E-21 9.5E-26 180.7 9.8 215 46-295 8-258 (422)
8 COG0708 XthA Exonuclease III [ 99.8 4.4E-20 9.5E-25 171.7 13.3 199 47-294 1-229 (261)
9 COG3568 ElsH Metal-dependent h 99.8 1.9E-19 4.1E-24 167.0 12.4 204 46-294 9-228 (259)
10 TIGR00195 exoDNase_III exodeox 99.8 8.6E-19 1.9E-23 167.7 16.8 199 47-294 1-224 (254)
11 TIGR00633 xth exodeoxyribonucl 99.8 2.5E-18 5.4E-23 164.5 16.0 200 47-293 1-227 (255)
12 PRK13911 exodeoxyribonuclease 99.8 8E-18 1.7E-22 159.5 16.2 198 47-294 1-223 (250)
13 PRK05421 hypothetical protein; 99.8 7.1E-18 1.5E-22 161.8 15.9 151 44-241 41-196 (263)
14 PF03372 Exo_endo_phos: Endonu 99.7 6.5E-16 1.4E-20 145.3 16.6 151 80-242 16-171 (249)
15 PTZ00297 pantothenate kinase; 99.7 1.1E-15 2.5E-20 173.9 19.7 169 44-239 8-207 (1452)
16 smart00476 DNaseIc deoxyribonu 99.7 3.2E-15 6.9E-20 142.5 18.8 167 45-248 16-200 (276)
17 KOG2756 Predicted Mg2+-depende 99.6 3.5E-15 7.7E-20 135.7 14.6 192 45-278 98-290 (349)
18 PRK15251 cytolethal distending 99.4 2.2E-12 4.8E-17 121.0 14.1 159 45-248 23-205 (271)
19 KOG0037 Ca2+-binding protein, 99.4 3.3E-13 7.2E-18 120.1 4.7 102 321-428 56-162 (221)
20 COG2374 Predicted extracellula 99.3 2.4E-11 5.3E-16 125.5 15.0 266 41-317 458-758 (798)
21 cd05022 S-100A13 S-100A13: S-1 99.3 7.3E-12 1.6E-16 98.6 6.4 70 317-392 3-75 (89)
22 cd05027 S-100B S-100B: S-100B 99.2 8.4E-11 1.8E-15 92.7 7.3 69 317-391 3-78 (88)
23 PF13499 EF-hand_7: EF-hand do 99.1 1.5E-10 3.3E-15 86.4 6.4 61 324-390 2-66 (66)
24 COG3021 Uncharacterized protei 99.1 6.4E-10 1.4E-14 105.5 10.8 196 44-293 86-282 (309)
25 cd05026 S-100Z S-100Z: S-100Z 99.1 4.2E-10 9.2E-15 89.9 7.1 74 317-392 5-81 (93)
26 COG5126 FRQ1 Ca2+-binding prot 99.0 8.2E-10 1.8E-14 95.7 8.7 66 320-391 90-155 (160)
27 KOG0027 Calmodulin and related 99.0 5.2E-10 1.1E-14 98.1 7.3 65 321-391 84-148 (151)
28 cd05029 S-100A6 S-100A6: S-100 99.0 6.6E-10 1.4E-14 87.6 7.1 70 317-391 5-78 (88)
29 KOG0027 Calmodulin and related 99.0 6.6E-10 1.4E-14 97.5 6.3 99 320-424 6-119 (151)
30 cd05025 S-100A1 S-100A1: S-100 99.0 1.4E-09 3.1E-14 86.9 7.3 74 317-392 4-80 (92)
31 cd05031 S-100A10_like S-100A10 99.0 1.7E-09 3.7E-14 86.8 7.0 69 319-393 5-80 (94)
32 COG5126 FRQ1 Ca2+-binding prot 98.9 1.2E-09 2.7E-14 94.5 6.0 120 318-451 16-146 (160)
33 smart00027 EH Eps15 homology d 98.9 3.1E-09 6.6E-14 85.7 6.5 66 319-392 7-72 (96)
34 cd00052 EH Eps15 homology doma 98.9 4.2E-09 9.1E-14 78.6 6.3 59 325-391 2-60 (67)
35 cd05023 S-100A11 S-100A11: S-1 98.8 9.4E-09 2E-13 81.2 7.2 76 317-392 4-80 (89)
36 PF13833 EF-hand_8: EF-hand do 98.8 8.3E-09 1.8E-13 73.6 6.2 49 338-391 3-52 (54)
37 cd00213 S-100 S-100: S-100 dom 98.8 1.3E-08 2.8E-13 80.6 6.7 71 319-391 5-78 (88)
38 PTZ00183 centrin; Provisional 98.7 1.8E-08 4E-13 88.7 5.6 119 320-451 15-144 (158)
39 smart00128 IPPc Inositol polyp 98.7 2.5E-07 5.4E-12 90.8 13.6 134 92-239 37-193 (310)
40 KOG0028 Ca2+-binding protein ( 98.7 9.6E-08 2.1E-12 81.1 8.4 86 298-391 84-169 (172)
41 cd00051 EFh EF-hand, calcium b 98.7 9.3E-08 2E-12 69.3 7.2 61 324-390 2-62 (63)
42 KOG0028 Ca2+-binding protein ( 98.6 3.4E-08 7.4E-13 83.8 5.2 102 320-427 31-143 (172)
43 cd05030 calgranulins Calgranul 98.6 8.3E-08 1.8E-12 75.8 6.4 70 317-392 3-79 (88)
44 PTZ00184 calmodulin; Provision 98.6 4.1E-08 8.8E-13 85.4 5.0 121 318-451 7-138 (149)
45 KOG0031 Myosin regulatory ligh 98.5 5.4E-07 1.2E-11 76.1 8.6 87 297-391 78-164 (171)
46 cd00252 SPARC_EC SPARC_EC; ext 98.5 2.8E-07 6.2E-12 76.3 6.8 62 320-391 46-107 (116)
47 PTZ00184 calmodulin; Provision 98.5 5E-07 1.1E-11 78.4 8.7 86 298-391 62-147 (149)
48 PTZ00183 centrin; Provisional 98.5 6.5E-07 1.4E-11 78.7 8.6 64 322-391 90-153 (158)
49 PF14658 EF-hand_9: EF-hand do 98.5 5.4E-07 1.2E-11 65.7 6.6 61 326-391 2-63 (66)
50 KOG0037 Ca2+-binding protein, 98.4 4.5E-07 9.8E-12 81.3 6.9 81 321-407 123-207 (221)
51 KOG0030 Myosin essential light 98.4 7.3E-07 1.6E-11 74.0 7.5 86 299-391 65-150 (152)
52 KOG0031 Myosin regulatory ligh 98.4 5.2E-07 1.1E-11 76.1 5.9 116 318-450 28-154 (171)
53 cd05024 S-100A10 S-100A10: A s 98.4 1.2E-06 2.5E-11 68.7 7.4 71 317-391 3-75 (91)
54 KOG0041 Predicted Ca2+-binding 98.3 1.7E-06 3.7E-11 76.1 7.8 67 318-390 95-161 (244)
55 KOG0036 Predicted mitochondria 98.3 7.3E-07 1.6E-11 86.8 5.8 102 319-425 11-117 (463)
56 KOG0034 Ca2+/calmodulin-depend 98.3 1.5E-06 3.3E-11 78.0 6.7 69 322-393 104-176 (187)
57 KOG0377 Protein serine/threoni 98.1 1.2E-05 2.7E-10 78.7 9.5 74 316-391 541-614 (631)
58 PF00036 EF-hand_1: EF hand; 98.1 3.6E-06 7.7E-11 51.4 3.7 27 365-391 1-27 (29)
59 PLN02964 phosphatidylserine de 98.0 1.2E-05 2.6E-10 85.0 6.6 63 324-392 181-243 (644)
60 KOG0030 Myosin essential light 97.9 8.3E-06 1.8E-10 67.8 3.7 96 320-421 9-119 (152)
61 PF00036 EF-hand_1: EF hand; 97.9 1E-05 2.2E-10 49.4 2.8 29 323-352 1-29 (29)
62 KOG0036 Predicted mitochondria 97.9 4.7E-05 1E-09 74.4 8.1 66 319-390 79-144 (463)
63 PLN02964 phosphatidylserine de 97.8 4.2E-05 9E-10 81.1 6.8 90 316-414 137-239 (644)
64 PF12763 EF-hand_4: Cytoskelet 97.7 9.7E-05 2.1E-09 59.9 7.0 63 320-391 8-70 (104)
65 PF13405 EF-hand_6: EF-hand do 97.7 2.9E-05 6.3E-10 48.3 2.8 29 324-353 2-31 (31)
66 KOG0044 Ca2+ sensor (EF-Hand s 97.7 0.00011 2.4E-09 66.2 7.1 91 297-391 78-174 (193)
67 KOG0044 Ca2+ sensor (EF-Hand s 97.6 0.00014 3E-09 65.5 7.1 76 309-390 49-126 (193)
68 KOG0566 Inositol-1,4,5-triphos 97.6 0.00022 4.8E-09 76.3 9.5 103 137-251 630-741 (1080)
69 KOG0038 Ca2+-binding kinase in 97.6 0.00011 2.4E-09 61.5 5.4 65 322-391 108-176 (189)
70 PF14788 EF-hand_10: EF hand; 97.6 0.00019 4.1E-09 49.4 5.5 47 339-390 1-47 (51)
71 PF13202 EF-hand_5: EF hand; P 97.4 0.00019 4.2E-09 42.1 3.5 24 366-389 1-24 (25)
72 KOG0046 Ca2+-binding actin-bun 97.3 0.00053 1.1E-08 69.1 6.5 71 318-392 15-85 (627)
73 PF13202 EF-hand_5: EF hand; P 97.3 0.00024 5.1E-09 41.7 2.4 25 324-349 1-25 (25)
74 PRK12309 transaldolase/EF-hand 97.2 0.00083 1.8E-08 67.6 7.6 52 321-391 333-384 (391)
75 KOG4065 Uncharacterized conser 97.2 0.0012 2.7E-08 53.0 6.3 64 325-389 70-142 (144)
76 PF10591 SPARC_Ca_bdg: Secrete 97.1 0.0003 6.5E-09 58.1 2.3 62 319-388 51-112 (113)
77 PF13405 EF-hand_6: EF-hand do 96.9 0.0016 3.4E-08 40.3 3.6 27 365-391 1-27 (31)
78 KOG4223 Reticulocalbin, calume 96.9 0.00098 2.1E-08 63.6 3.8 64 324-392 165-228 (325)
79 KOG0040 Ca2+-binding actin-bun 96.7 0.0029 6.3E-08 70.7 6.1 69 321-395 2252-2327(2399)
80 PF14529 Exo_endo_phos_2: Endo 96.5 0.0032 6.9E-08 52.2 4.4 87 186-296 1-99 (119)
81 KOG2643 Ca2+ binding protein, 96.5 0.0017 3.6E-08 64.3 2.6 88 318-407 229-335 (489)
82 KOG2243 Ca2+ release channel ( 96.1 0.012 2.5E-07 65.1 6.7 80 306-392 4041-4120(5019)
83 smart00054 EFh EF-hand, calciu 95.7 0.012 2.6E-07 34.4 2.8 27 365-391 1-27 (29)
84 KOG1294 Apurinic/apyrimidinic 95.6 0.03 6.5E-07 55.1 6.7 187 86-295 83-307 (335)
85 KOG4251 Calcium binding protei 95.4 0.011 2.5E-07 54.0 2.9 65 322-390 101-166 (362)
86 smart00054 EFh EF-hand, calciu 95.2 0.021 4.5E-07 33.4 2.8 27 324-351 2-28 (29)
87 KOG0034 Ca2+/calmodulin-depend 95.2 0.038 8.2E-07 49.8 5.6 61 325-390 69-130 (187)
88 PF09279 EF-hand_like: Phospho 95.1 0.053 1.1E-06 42.0 5.3 66 323-393 1-70 (83)
89 KOG4223 Reticulocalbin, calume 94.9 0.041 9E-07 52.8 5.1 75 312-392 66-141 (325)
90 PLN03191 Type I inositol-1,4,5 94.7 0.18 3.9E-06 52.9 9.5 58 182-239 418-481 (621)
91 PF13833 EF-hand_8: EF-hand do 94.0 0.053 1.2E-06 38.0 2.8 31 320-351 23-53 (54)
92 COG5411 Phosphatidylinositol 5 93.6 0.27 5.8E-06 49.3 7.7 56 182-239 163-218 (460)
93 PF13499 EF-hand_7: EF-hand do 93.5 0.1 2.2E-06 38.2 3.7 26 366-391 2-27 (66)
94 PTZ00312 inositol-1,4,5-tripho 93.3 0.31 6.7E-06 46.4 7.2 58 182-243 78-144 (356)
95 KOG1029 Endocytic adaptor prot 92.9 0.12 2.6E-06 54.8 4.4 64 320-391 193-256 (1118)
96 KOG1955 Ral-GTPase effector RA 92.5 0.21 4.6E-06 50.4 5.3 65 319-391 228-292 (737)
97 KOG2643 Ca2+ binding protein, 91.8 0.081 1.8E-06 52.7 1.5 53 330-390 207-259 (489)
98 KOG3555 Ca2+-binding proteogly 91.0 0.23 5E-06 48.0 3.5 62 321-392 249-310 (434)
99 PF05517 p25-alpha: p25-alpha 90.7 0.87 1.9E-05 39.8 6.7 63 326-391 6-68 (154)
100 KOG2562 Protein phosphatase 2 89.9 0.57 1.2E-05 47.3 5.4 64 320-392 276-343 (493)
101 PF08726 EFhand_Ca_insen: Ca2+ 89.4 0.13 2.8E-06 38.2 0.4 56 321-390 5-67 (69)
102 KOG0377 Protein serine/threoni 88.9 2.3 4.9E-05 42.8 8.6 70 318-389 460-572 (631)
103 smart00027 EH Eps15 homology d 88.4 0.24 5.2E-06 39.5 1.3 28 365-392 11-38 (96)
104 KOG1976 Inositol polyphosphate 87.4 1.2 2.5E-05 42.6 5.4 67 182-252 167-243 (391)
105 KOG4578 Uncharacterized conser 87.2 1.4 3.1E-05 42.4 6.0 97 286-390 283-396 (421)
106 PF01023 S_100: S-100/ICaBP ty 85.9 1.2 2.6E-05 29.9 3.4 33 319-351 3-36 (44)
107 COG5239 CCR4 mRNA deadenylase, 85.9 0.46 1E-05 46.5 2.0 59 185-249 139-197 (378)
108 cd05022 S-100A13 S-100A13: S-1 84.9 0.98 2.1E-05 35.5 3.1 31 322-353 47-77 (89)
109 cd05026 S-100Z S-100Z: S-100Z 84.7 1 2.2E-05 35.7 3.2 33 320-353 51-83 (93)
110 KOG0042 Glycerol-3-phosphate d 84.5 1.3 2.8E-05 46.0 4.5 64 321-390 592-655 (680)
111 PF08976 DUF1880: Domain of un 84.3 0.93 2E-05 37.0 2.7 32 360-391 3-34 (118)
112 KOG4666 Predicted phosphate ac 84.2 1 2.3E-05 43.3 3.5 62 322-390 296-357 (412)
113 cd00051 EFh EF-hand, calcium b 84.1 0.9 2E-05 31.6 2.4 26 366-391 2-27 (63)
114 cd05023 S-100A11 S-100A11: S-1 83.4 2.6 5.6E-05 33.1 4.9 32 321-353 51-82 (89)
115 PF14788 EF-hand_10: EF hand; 83.3 1.4 3E-05 30.5 2.9 32 320-352 19-50 (51)
116 cd05027 S-100B S-100B: S-100B 82.9 1.9 4.1E-05 33.8 4.0 27 365-391 9-37 (88)
117 cd00252 SPARC_EC SPARC_EC; ext 82.8 1.2 2.6E-05 36.9 2.9 29 321-350 79-107 (116)
118 cd05024 S-100A10 S-100A10: A s 82.8 3.5 7.7E-05 32.4 5.4 53 300-353 24-78 (91)
119 PRK12309 transaldolase/EF-hand 82.4 1.2 2.6E-05 45.0 3.4 51 359-412 329-379 (391)
120 cd05031 S-100A10_like S-100A10 82.0 0.95 2.1E-05 35.8 2.0 34 320-354 49-82 (94)
121 KOG2562 Protein phosphatase 2 81.2 3.6 7.9E-05 41.7 6.1 111 274-388 301-420 (493)
122 cd05029 S-100A6 S-100A6: S-100 80.7 1.8 3.9E-05 33.9 3.1 33 320-353 49-81 (88)
123 cd00052 EH Eps15 homology doma 80.2 1.6 3.6E-05 31.5 2.6 25 367-391 2-26 (67)
124 cd05030 calgranulins Calgranul 78.6 2.4 5.1E-05 33.2 3.2 32 321-353 50-81 (88)
125 cd05025 S-100A1 S-100A1: S-100 78.4 3.3 7.1E-05 32.5 4.0 33 320-353 50-82 (92)
126 cd00213 S-100 S-100: S-100 dom 78.3 2.2 4.7E-05 33.1 2.9 28 364-391 8-37 (88)
127 KOG0751 Mitochondrial aspartat 78.3 3.4 7.4E-05 42.2 4.9 106 321-435 107-219 (694)
128 KOG3866 DNA-binding protein of 77.5 3.1 6.8E-05 39.8 4.1 69 321-390 243-322 (442)
129 KOG4251 Calcium binding protei 73.1 4.2 9.1E-05 37.7 3.6 59 327-391 285-344 (362)
130 KOG0169 Phosphoinositide-speci 71.8 5.3 0.00011 43.1 4.6 63 322-390 136-198 (746)
131 KOG4666 Predicted phosphate ac 71.0 7.7 0.00017 37.6 5.0 65 321-390 258-322 (412)
132 KOG0808 Carbon-nitrogen hydrol 66.5 5.2 0.00011 37.4 2.8 26 78-103 98-123 (387)
133 PF14513 DAG_kinase_N: Diacylg 65.7 8.1 0.00018 33.0 3.7 46 338-390 6-58 (138)
134 KOG0035 Ca2+-binding actin-bun 65.6 8.9 0.00019 42.5 4.8 66 320-391 745-815 (890)
135 PF12763 EF-hand_4: Cytoskelet 62.3 7.4 0.00016 31.5 2.7 30 321-351 42-71 (104)
136 KOG0041 Predicted Ca2+-binding 61.1 7.4 0.00016 35.1 2.7 48 361-408 93-153 (244)
137 PF14658 EF-hand_9: EF-hand do 56.6 15 0.00031 27.1 3.1 31 321-351 34-64 (66)
138 KOG0751 Mitochondrial aspartat 55.5 30 0.00064 35.7 6.1 54 331-392 83-136 (694)
139 KOG2871 Uncharacterized conser 55.1 11 0.00023 37.3 2.9 67 320-392 307-374 (449)
140 KOG0998 Synaptic vesicle prote 53.0 4.5 9.8E-05 45.3 0.0 68 315-390 276-343 (847)
141 KOG1029 Endocytic adaptor prot 52.2 26 0.00056 38.1 5.3 53 326-387 20-72 (1118)
142 PF07499 RuvA_C: RuvA, C-termi 50.8 33 0.00072 23.2 4.0 40 342-390 3-42 (47)
143 KOG1707 Predicted Ras related/ 47.8 20 0.00044 37.8 3.7 61 320-388 313-373 (625)
144 PF09069 EF-hand_3: EF-hand; 45.5 82 0.0018 24.7 6.0 66 323-392 4-75 (90)
145 cd07313 terB_like_2 tellurium 43.9 23 0.00049 28.3 2.8 52 338-392 14-65 (104)
146 KOG4347 GTPase-activating prot 42.3 33 0.00071 36.6 4.2 60 320-386 553-612 (671)
147 KOG3555 Ca2+-binding proteogly 41.7 26 0.00056 34.4 3.2 77 311-390 200-276 (434)
148 KOG0565 Inositol polyphosphate 39.7 83 0.0018 26.8 5.9 60 182-243 57-124 (145)
149 COG4103 Uncharacterized protei 37.5 37 0.0008 29.0 3.1 60 326-391 34-93 (148)
150 KOG1955 Ral-GTPase effector RA 36.2 27 0.00059 35.9 2.5 31 320-351 263-293 (737)
151 PF05042 Caleosin: Caleosin re 34.1 34 0.00074 30.3 2.5 32 322-354 7-38 (174)
152 KOG1954 Endocytosis/signaling 33.3 56 0.0012 32.7 4.0 59 320-387 442-500 (532)
153 PF03979 Sigma70_r1_1: Sigma-7 32.8 41 0.00088 25.8 2.5 38 338-382 20-57 (82)
154 PF08461 HTH_12: Ribonuclease 32.7 60 0.0013 23.7 3.3 35 338-377 12-46 (66)
155 PLN02230 phosphoinositide phos 32.3 1.2E+02 0.0027 32.5 6.8 69 321-393 28-103 (598)
156 KOG4004 Matricellular protein 32.2 21 0.00045 32.2 0.9 56 328-390 193-248 (259)
157 PF09068 EF-hand_2: EF hand; 31.6 1.1E+02 0.0024 25.7 5.1 70 321-390 40-123 (127)
158 PF09550 DUF2376: Conserved hy 31.2 86 0.0019 20.9 3.4 32 339-373 10-41 (43)
159 PF01885 PTS_2-RNA: RNA 2'-pho 30.6 1.4E+02 0.0029 27.0 5.9 58 308-376 7-64 (186)
160 PLN03191 Type I inositol-1,4,5 30.2 62 0.0013 34.6 4.1 16 441-456 576-591 (621)
161 PF10591 SPARC_Ca_bdg: Secrete 28.5 34 0.00073 28.1 1.5 28 320-348 86-113 (113)
162 PF05042 Caleosin: Caleosin re 28.5 1.6E+02 0.0035 26.2 5.7 73 322-397 96-170 (174)
163 PLN02952 phosphoinositide phos 27.6 2.1E+02 0.0046 30.8 7.6 82 322-408 38-126 (599)
164 cd00086 homeodomain Homeodomai 27.5 1.7E+02 0.0037 20.0 4.9 39 321-372 12-50 (59)
165 PTZ00235 DNA polymerase epsilo 27.5 1.6E+02 0.0034 28.6 6.0 14 227-240 64-77 (291)
166 PLN02222 phosphoinositide phos 26.7 1.4E+02 0.0031 32.0 6.1 67 321-393 24-91 (581)
167 KOG0038 Ca2+-binding kinase in 26.5 90 0.002 26.8 3.6 55 329-390 78-134 (189)
168 PF12419 DUF3670: SNF2 Helicas 23.7 93 0.002 26.6 3.4 54 335-389 80-138 (141)
169 PF11738 DUF3298: Protein of u 22.7 43 0.00094 24.7 1.0 22 439-461 43-64 (78)
170 PLN02228 Phosphoinositide phos 22.2 2.4E+02 0.0051 30.3 6.6 67 321-393 23-93 (567)
171 PRK00523 hypothetical protein; 21.8 2E+02 0.0044 21.5 4.3 43 324-373 26-68 (72)
172 PF07308 DUF1456: Protein of u 21.7 2.5E+02 0.0054 20.8 4.8 37 310-351 5-41 (68)
173 PF03672 UPF0154: Uncharacteri 21.2 2.2E+02 0.0048 20.8 4.3 30 339-373 31-60 (64)
174 PF07492 Trehalase_Ca-bi: Neut 20.7 43 0.00094 20.3 0.5 18 367-384 2-19 (30)
175 COG5562 Phage envelope protein 20.6 59 0.0013 27.5 1.5 51 338-397 55-105 (137)
176 PF05099 TerB: Tellurite resis 20.3 44 0.00094 28.1 0.7 50 338-391 38-88 (140)
177 PF09966 DUF2200: Uncharacteri 20.2 1.2E+02 0.0026 24.5 3.0 36 341-389 24-59 (111)
No 1
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=100.00 E-value=3.8e-39 Score=315.81 Aligned_cols=371 Identities=32% Similarity=0.367 Sum_probs=269.7
Q ss_pred ceEEEecccccccccCCccccccccCCCCcCChHhHHHHHHHHHhhCCCcEEEEeeeecChhhHHHHHHHHhccCCccEE
Q 012456 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTF 125 (463)
Q Consensus 46 ~lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~i~~~~~DIIcLQEv~~~~~~~~~~l~~~l~~~gY~~~ 125 (463)
.|+||||||||+.+.+..... +.+.+...+.|..|.+.|+.+|..++|||+|||||| .+++..++++.+..+||..+
T Consensus 116 ~ftvmSYNILAQ~l~~~~~r~-~~~~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq--~d~~~~~~~~~~~~lGy~~~ 192 (495)
T KOG2338|consen 116 DFTVMSYNILAQDLLRDIRRL-YFPESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQ--EDHYPEFWQPLLGKLGYTGF 192 (495)
T ss_pred ceEEEEehHhHHHHHHHhHHh-hccCChhhcchhHHhHHHHHHHhhcCCCeeeehhhh--hhhhHHHHHHHHhhcCceEE
Confidence 899999999999883322211 112567889999999999999999999999999996 46777889999999999999
Q ss_pred EeccCCCCCceeEEEEeCCcceEeeeEEEEecccc------CceeeeEEeeeecccccccCCCCceEEEEEeecCCCCCC
Q 012456 126 SLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDS 199 (463)
Q Consensus 126 ~~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~------~r~~~~~~~~~~~~~~~~~~~~~~~v~v~ntHL~~~~~~ 199 (463)
+..+++.+.+||||+|+.++|.++....+.+.+.. +.+++.+.++..+ ....++.++|+||||.|++
T Consensus 193 ~~r~t~~KthG~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~-----~~~~sq~ilVanTHLl~np-- 265 (495)
T KOG2338|consen 193 FKRRTGTKTHGVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRL-----VDESSQGILVANTHLLFNP-- 265 (495)
T ss_pred EEeccCCCCceEEEEEecccceecccchhhcccccchhhcccceeEEEEEEecc-----cCcccCceEEEeeeeeecC--
Confidence 99989899999999999999999999998876544 4556666555421 0113679999999999976
Q ss_pred CchhhHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCccccchhhhhhcCCcccccccccccCCCCCCccccccccCc
Q 012456 200 SLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRNH 279 (463)
Q Consensus 200 ~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~w~s~~~~ 279 (463)
...++|++|.+.|++.++++....+ ...|+|+|||||+.|++++|.+|++.++....+.++. ..+.+.|... ++
T Consensus 266 ~~~~vrL~Q~~iiL~~~~~~~~~~~-~~~pi~l~GDfNt~p~~~~y~fl~~~~l~~~~~~~~~----~e~s~~~~~~-~~ 339 (495)
T KOG2338|consen 266 SRSDVRLAQVYIILAELEKMSKSSK-SHWPIFLCGDFNTEPDSPPYLFLTSGPLIYDGRAAHT----IEDSHRYVFS-ES 339 (495)
T ss_pred cccchhhHHHHHHHHHHHHHHhhcc-cCCCeEEecCCCCCCCCCcchhhhcCCceeccccccc----cccccccccc-cc
Confidence 6779999999999999999988654 5789999999999999999999999888765554441 2444555554 22
Q ss_pred CCCccccccccccCCCCCCCCchhhhHHHHHHHHHHHHhhhhhhHhHhhhhc-cccCCCCcccHHHHHHHHHhcccCCCC
Q 012456 280 RGNICGVDFIWLRNPNQSRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFF-KADNNGDVITHSAFCEALRQVNLAGLP 358 (463)
Q Consensus 280 ~~~~~~iD~i~~~~~~~~~~~~~T~~~~~~~~~idy~~~~~~~~~~~~F~~~-D~d~~~g~I~~~el~~~l~~lg~~~~~ 358 (463)
+....+.| ..|........++....++..-.++|... |++.. -..+++|+....+.+++..++
T Consensus 340 ~~ge~g~d---------------~~~~~~~~s~~k~~~~~~s~~~~e~~t~~g~~~~~-~~~~~~~h~~~~~~~s~~s~g 403 (495)
T KOG2338|consen 340 RLGEEGED---------------DEEESAAFSRGKGQLSQASIPKPEIFTATGDKNHL-VELTYSEHESLKVNVSLYSHG 403 (495)
T ss_pred ccCccccc---------------chhhhhhhccCccccccccCCCccccccccccchh-HHHHHHHhhhhhcccceeecc
Confidence 23333332 12667777777777766666677888876 44444 457778888754555543344
Q ss_pred CCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhccccccccccccCCCcccccccccccccCceeeccccCchhhhcCCC
Q 012456 359 YGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLSCSAQIENNCNDNMEDSKDCSEKEILGFAVKDAFLFPSEVEKGKW 438 (463)
Q Consensus 359 ~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~v~~a~l~~~~~~~g~w 438 (463)
..+. ..+..+. |.++.|..+|..=.... ..-.+-......++.- .-...+.++..+--+..+|.|++|+-|
T Consensus 404 ~~~~--~~~~~~~--~~gep~vt~~~~~~~g~-~dyif~~~~~~~~~~~----~~~~~~~ikl~~~l~ip~~~e~~k~~~ 474 (495)
T KOG2338|consen 404 YGLV--HTENAWL--DRGEPGVTNYALTWKGT-LDYIFYSPGDCKQSNR----EFEEDEAIKLKGLLRIPSPQEMWKAGQ 474 (495)
T ss_pred cccc--chhhccc--cCCCcceecHHhhhccc-eeeEEeccCcccccch----hhhcccceeEEEEecCCCHHHhhccCC
Confidence 3433 3334433 88889999997653222 1111111111111111 122355788888899999999999999
Q ss_pred CCC-CcCCCCCceeEEeece
Q 012456 439 PEN-YSLSDHAPLSVVFSPV 457 (463)
Q Consensus 439 ~~~-~~~s~~~~l~~~~~~~ 457 (463)
|.+ +--|||..|+++|+++
T Consensus 475 p~~~~~~SDH~aL~~~~~~~ 494 (495)
T KOG2338|consen 475 PPNGRYGSDHIALVAQFSLV 494 (495)
T ss_pred CCCCCCcccceEeeEeeEee
Confidence 999 5559999999999986
No 2
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=100.00 E-value=1.2e-36 Score=314.07 Aligned_cols=267 Identities=24% Similarity=0.340 Sum_probs=187.2
Q ss_pred CCCceEEEecccccccccCCccccccccCCCCcCChHhHHHHHHHHHhhCCCcEEEEeeeecChhhHHHHHHHHhccCCc
Q 012456 43 GECCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGY 122 (463)
Q Consensus 43 ~~~~lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~i~~~~~DIIcLQEv~~~~~~~~~~l~~~l~~~gY 122 (463)
...+|||||||||++.|++.+.| +|| ++..+.|.+|+++|+++|..++|||||||||+ ...+.+++...|...||
T Consensus 251 ~~~~frVmSYNILAd~ya~~dly-~yc--p~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~--~~~~~d~~~p~L~~~GY 325 (606)
T PLN03144 251 SAGTFTVLSYNILSDLYATSDMY-SYC--PPWALSWTYRRQNLLREIVGYRADILCLQEVQ--SDHFEEFFAPELDKHGY 325 (606)
T ss_pred CCCCEEEEEeeeccccccCcccc-cCC--CccccCHHHHHHHHHHHHHhcCCCEEEEeecC--HHHHHHHHHhhhhhcCc
Confidence 45689999999999999987654 677 45789999999999999999999999999994 56677788899999999
Q ss_pred cEEEeccCCC-------CCceeEEEEeCCcceEeeeEEEEecccc----------------------CceeeeEEeeeec
Q 012456 123 NTFSLARTNN-------RGDGLLTALHRDYFNVLNYRELLFNDFG----------------------DRVAQLVHVESVV 173 (463)
Q Consensus 123 ~~~~~~~~~~-------~~~G~ai~~r~sr~~i~~~~~~~~~~~~----------------------~r~~~~~~~~~~~ 173 (463)
.+++..+++. ..+|+|||||++||.+++...+.|+... +.++.++.++...
T Consensus 326 ~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~~l~Rl~kdNVAliv~Le~k~ 405 (606)
T PLN03144 326 QALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLKDNVALIVVLEAKF 405 (606)
T ss_pred eEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchhhhhhhccCcEEEEEEEEEec
Confidence 9999887643 5799999999999999999888664321 1234444443321
Q ss_pred cccccc-CCCCceEEEEEeecCCCCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCccccchhhhhhcCC
Q 012456 174 PFFQNQ-GGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQG 252 (463)
Q Consensus 174 ~~~~~~-~~~~~~v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g 252 (463)
...... .+.++.|+|+||||+|.+ ...++|+.|+..|++.++++... .+.|+|||||||+.|++.+|++|. .|
T Consensus 406 ~~~~~~~~~~~~~l~VaNTHL~~~p--~~~dvRl~Q~~~Ll~~l~~~~~~---~~~PvIlcGDFNS~P~S~vy~lLt-~G 479 (606)
T PLN03144 406 GNQGADNGGKRQLLCVANTHIHANQ--ELKDVKLWQVHTLLKGLEKIAAS---ADIPMLVCGDFNSVPGSAPHCLLA-TG 479 (606)
T ss_pred ccccccCCCCccEEEEEEeeeccCC--ccchhHHHHHHHHHHHHHHHhhc---CCCceEEeccCCCCCCChhhhhhh-cC
Confidence 000000 113467999999999966 56789999999999999988653 378999999999999999999995 56
Q ss_pred cccc-c-cccc-cc---C-CC-CCCccccccccCcCC----CccccccccccCCCCCCCCchhhhHHHHHHHHHHHHhhh
Q 012456 253 FVSS-Y-DVAH-QY---T-DG-DADAHKWVSHRNHRG----NICGVDFIWLRNPNQSRKPLQASWAEAVFSIIKCQLQKA 320 (463)
Q Consensus 253 ~~~~-~-~~~~-~~---~-~~-~~~~~~w~s~~~~~~----~~~~iD~i~~~~~~~~~~~~~T~~~~~~~~~idy~~~~~ 320 (463)
.++. + +... .+ + .. ......+.+.+.+.. ....+..+-.+-.....+|.||+|+..|.++|||||...
T Consensus 480 ~v~~~h~d~~~~~~~~~~~~~~l~H~~~L~SAY~~~~~~~g~~~~~~~~~~r~~~~~geP~fTNyt~~F~gtlDYIfys~ 559 (606)
T PLN03144 480 KVDPLHPDLAVDPLGILRPASKLTHQLPLVSAYSSFARMPGSGSGLEQQRRRMDPATNEPLFTNCTRDFIGTLDYIFYTA 559 (606)
T ss_pred CcCCCchhhccCccccccccccccCCCcccchhhhhccccccccchhhhhhccccccCCCCceeecCCcceeEEEEEEcC
Confidence 5542 1 1110 00 0 00 011122333332210 000000000000012568999999999999999999653
No 3
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=99.93 E-value=1.8e-26 Score=217.88 Aligned_cols=255 Identities=20% Similarity=0.258 Sum_probs=174.1
Q ss_pred ceEEEecccccccccCCccccccccCCCCcCChHhHHHHHHHHHhhCCCcEEEEeeeecChhhHHHHHHHHhccCCccEE
Q 012456 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTF 125 (463)
Q Consensus 46 ~lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~i~~~~~DIIcLQEv~~~~~~~~~~l~~~l~~~gY~~~ 125 (463)
.|+|||||+|++.|+++.-+. .+...++|.+|.+.|+++|..++|||+|||||+ ...+.+++++.|...||..+
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~----~s~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd--~~~~~~fw~~~l~~~gY~~i 103 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYP----YSGWALKWSYRSRLLLQELLYYNADILCLQEVD--AEDFEDFWKDQLGKLGYDGI 103 (378)
T ss_pred eeEEEehhhhhhhhccccccC----CchhhhhhHHHHHHHHHHHhccCCceeeeehhh--hhHHHHHHHHHhcccccceE
Confidence 699999999999999998873 234789999999999999999999999999996 56788899999999999999
Q ss_pred EeccCC----------CCCceeEEEEeC----CcceEeeeEEEEecccc-------------CceeeeEEee--eecccc
Q 012456 126 SLARTN----------NRGDGLLTALHR----DYFNVLNYRELLFNDFG-------------DRVAQLVHVE--SVVPFF 176 (463)
Q Consensus 126 ~~~~~~----------~~~~G~ai~~r~----sr~~i~~~~~~~~~~~~-------------~r~~~~~~~~--~~~~~~ 176 (463)
+.++.+ ...+||+|++++ ||+-++-.....|.... ++++....+. ..+.-.
T Consensus 104 f~~k~~k~~~m~~~d~t~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~~~w~~l~~~l 183 (378)
T COG5239 104 FIPKERKVKWMIDYDTTKVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDNIAWVCLFVGL 183 (378)
T ss_pred EecCCCcccccccccccccceEEEEEEeccccchhhhhhhhhHhhcccceeehhhhHHHHHHHHHhhhhhcchhheeeee
Confidence 887655 146899999987 55333333222221100 1111111111 000001
Q ss_pred cccCCCCceEEEEEeecCCCCCCCchhhHHHHHHHHHHHHHHHHhhcCC-----------CCCcEEEeecCCCccccchh
Q 012456 177 QNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKL-----------NHIPIILCGDWNGSKRGHVY 245 (463)
Q Consensus 177 ~~~~~~~~~v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~-----------~~~pvIl~GDFN~~p~s~~~ 245 (463)
. .+.+|..+.|+|||++|.+ ...++++-|+..+...+++..++... +..++.+|||||+...+.+|
T Consensus 184 ~-n~e~gd~~~va~Th~~w~~--~~~dvk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns~~~s~vy 260 (378)
T COG5239 184 F-NKEPGDTPYVANTHLPWDP--KYRDVKLIQCSLLYRELKKVLKEELNDDKEEGDIKSYPEVDILITGDFNSLRASLVY 260 (378)
T ss_pred c-cCCCCCceeEEeccccccC--CCCchheehhhHHHHHHHHHhhhcCCcchhccccccCcccccccCCCccceecceeh
Confidence 1 1238899999999999944 66789999999999998887654321 12377999999999999999
Q ss_pred hhhhcCCcccccccccccCCCCCCccccccccCcCCCccccccccccCCCCCCCCchhhhHHHHHHHHHHHHhhhh
Q 012456 246 KFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRNHRGNICGVDFIWLRNPNQSRKPLQASWAEAVFSIIKCQLQKAS 321 (463)
Q Consensus 246 ~~l~~~g~~~~~~~~~~~~~~~~~~~~w~s~~~~~~~~~~iD~i~~~~~~~~~~~~~T~~~~~~~~~idy~~~~~~ 321 (463)
..|.. +++..++..++ ......+.+.. .++---+...+...++.+|+|..++.+.|||||....
T Consensus 261 ~~l~~-~~~q~H~~~~~------~~~~lysvg~~-----~~h~~n~~~~~~~~~~~fTN~t~~~kG~iDYIfy~~~ 324 (378)
T COG5239 261 KFLVT-SQIQLHESLNG------RDFSLYSVGYK-----FVHPENLKSDNSKGELGFTNWTPGFKGVIDYIFYHGG 324 (378)
T ss_pred hhhhh-HHHHhhhcccc------cchhhhccccc-----ccChhhcccCCCcCCcccccccccccceeEEEEEecC
Confidence 99955 44443332111 11112222110 0000001112456789999999999999999996555
No 4
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.89 E-value=3.7e-22 Score=192.66 Aligned_cols=212 Identities=15% Similarity=0.211 Sum_probs=135.5
Q ss_pred eEEEecccccccccCCccccccccCCCCcCChHhHHHHHHHHHhhCCCcEEEEeeeecChhhHHHHHHHHhc-cCCccEE
Q 012456 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLG-NAGYNTF 125 (463)
Q Consensus 47 lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~i~~~~~DIIcLQEv~~~~~~~~~~l~~~l~-~~gY~~~ 125 (463)
||||||||....+. ......|..|..+|++.+...+|||||||||+ .....+.+...|+ .++|...
T Consensus 1 lkVmtyNv~~l~~~-----------~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~--~~~~~~~l~~~L~~~yp~~~~ 67 (283)
T TIGR03395 1 IKILSHNVYMLSTN-----------LYPNWGQMERADLIASADYIKNQDVVILNEAF--DTSASKRLLDNLREEYPYQTD 67 (283)
T ss_pred CeEEEEEeeeeccc-----------ccCCccHhHHHHHHHHhhcccCCCEEEEeccc--chHHHHHHHHHHHhhCCceEe
Confidence 68999999643211 11235688999999999999999999999995 3333333444443 3444332
Q ss_pred EeccC--------------CCCCceeEEEEeCCcceEeeeEEEEecccc------CceeeeEEeeeecccccccCCCCce
Q 012456 126 SLART--------------NNRGDGLLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFFQNQGGGQQE 185 (463)
Q Consensus 126 ~~~~~--------------~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~------~r~~~~~~~~~~~~~~~~~~~~~~~ 185 (463)
...+. .....|++|+ ||+|++......|+... .|....+.+.. +|+.
T Consensus 68 ~~g~~~~g~~~~~g~~~~~~~~~~G~~iL---Sr~Pi~~~~~~~f~~~~~~d~~~~kg~l~a~i~~----------~g~~ 134 (283)
T TIGR03395 68 VIGRSKKGWDKTLGNYSSSALEDGGVAIV---SKWPIEEKIQYIFNKGCGADNLSNKGFAYVKINK----------NGKK 134 (283)
T ss_pred ecccccccchhccccccccCccCCEEEEE---ECCCccccEEEEccCCCCCccccCCceEEEEEec----------CCeE
Confidence 22111 1235699999 88999988777775332 12223333332 6789
Q ss_pred EEEEEeecCCCCCC----CchhhHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCccccchhhhhhcC-Ccccccccc
Q 012456 186 ILIVNTHLLFPHDS----SLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQ-GFVSSYDVA 260 (463)
Q Consensus 186 v~v~ntHL~~~~~~----~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~-g~~~~~~~~ 260 (463)
+.|+||||.+.... .....|..|+..|.+++..... ..+.|+|||||||..|.+..|+.|... +..+.
T Consensus 135 ~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~---~~~~pvIl~GDfN~~~~s~~~~~ml~~l~~~~p---- 207 (283)
T TIGR03395 135 FHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNI---PKDETVLIGGDLNVNKGSNEYHDMFKTLNVSEP---- 207 (283)
T ss_pred EEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhccC---CCCceEEEEeeCCCCCCCHHHHHHHHHhcccCC----
Confidence 99999999764311 1257899999999998865321 125789999999999999999877432 11110
Q ss_pred cccCCCCCCccccccccCc-------CCCccccccccccCCC
Q 012456 261 HQYTDGDADAHKWVSHRNH-------RGNICGVDFIWLRNPN 295 (463)
Q Consensus 261 ~~~~~~~~~~~~w~s~~~~-------~~~~~~iD~i~~~~~~ 295 (463)
.+. +..+||.+..|. .....++|||+++++.
T Consensus 208 -~~~---g~~~T~d~~~N~~a~~~~~~~~~~~lDyvl~~~~~ 245 (283)
T TIGR03395 208 -RYV---GVPATWDATTNSIAKYYYPKEEPEYLDYIFVSKSH 245 (283)
T ss_pred -CcC---CCCCCcCCCcCchhhhhcCCCCcceEEEEEEECCC
Confidence 111 124456543331 1334589999999763
No 5
>PRK11756 exonuclease III; Provisional
Probab=99.89 E-value=2.3e-22 Score=193.85 Aligned_cols=203 Identities=18% Similarity=0.202 Sum_probs=128.7
Q ss_pred eEEEecccccccccCCccccccccCCCCcCChHhHHHHHHHHHhhCCCcEEEEeeeecChhhHHHHHHHHhccCCccEEE
Q 012456 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTFS 126 (463)
Q Consensus 47 lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~i~~~~~DIIcLQEv~~~~~~~~~~l~~~l~~~gY~~~~ 126 (463)
||||||||... ..|.+.|+++|++.+||||||||++.....+. ...+...||.+++
T Consensus 1 mri~T~Nv~g~---------------------~~~~~~i~~~i~~~~pDIi~LQE~~~~~~~~~---~~~~~~~gy~~~~ 56 (268)
T PRK11756 1 MKFVSFNINGL---------------------RARPHQLEAIIEKHQPDVIGLQETKVHDEMFP---LEEVEALGYHVFY 56 (268)
T ss_pred CEEEEEEcCCH---------------------HHHHHHHHHHHHhcCCCEEEEEecccccccCC---HHHHHhcCCEEEE
Confidence 69999999632 23567899999999999999999963222111 1223446887766
Q ss_pred eccCCCCCceeEEEEeCCcceEeeeEEEEeccc-cCceeeeEEeeeecccccccCCCCceEEEEEeecCCCCCCC---ch
Q 012456 127 LARTNNRGDGLLTALHRDYFNVLNYRELLFNDF-GDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSS---LS 202 (463)
Q Consensus 127 ~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~v~v~ntHL~~~~~~~---~~ 202 (463)
.. .....|+||++ |+|+..... .++.. ....+..+...... .++.+.|+|+|+..+.... ..
T Consensus 57 ~~--~~~~~GvailS---r~p~~~~~~-~~~~~~~~~~~r~l~~~i~~--------~~g~~~v~n~y~P~~~~~~~~~~~ 122 (268)
T PRK11756 57 HG--QKGHYGVALLS---KQTPIAVRK-GFPTDDEEAQRRIIMATIPT--------PNGNLTVINGYFPQGESRDHPTKF 122 (268)
T ss_pred eC--CCCCCEEEEEE---CCChHHeEE-CCCCccccccCCEEEEEEEc--------CCCCEEEEEEEecCCCCCCcchhH
Confidence 43 23457999994 555654432 22211 11223333333311 3345999999995432211 11
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCccccc--------------------------hhhhhhcCCcccc
Q 012456 203 VVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGH--------------------------VYKFLRSQGFVSS 256 (463)
Q Consensus 203 ~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~--------------------------~~~~l~~~g~~~~ 256 (463)
..|.++...|.+++.+... .+.|+|||||||..|.+. .++.|.+.||+|+
T Consensus 123 ~~r~~~~~~l~~~l~~~~~----~~~pvIl~GDfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~l~D~ 198 (268)
T PRK11756 123 PAKRQFYQDLQNYLETELS----PDNPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWLDRLMDWGLVDT 198 (268)
T ss_pred HHHHHHHHHHHHHHHHHhc----cCCCEEEEeecccCCChhhcCCcccChHHhcccCCccCCHHHHHHHHHHHhCCcEee
Confidence 2567788888888877643 257999999999987654 4556667799999
Q ss_pred cccccccCCCCCCccccccccCcC---CCccccccccccCC
Q 012456 257 YDVAHQYTDGDADAHKWVSHRNHR---GNICGVDFIWLRNP 294 (463)
Q Consensus 257 ~~~~~~~~~~~~~~~~w~s~~~~~---~~~~~iD~i~~~~~ 294 (463)
|+..++.. ...+||.+..... ..-.+|||||++.+
T Consensus 199 ~R~~~p~~---~~~~T~~~~~~~~~~~~~g~RIDyi~~s~~ 236 (268)
T PRK11756 199 FRQLNPDV---NDRFSWFDYRSKGFDDNRGLRIDLILATQP 236 (268)
T ss_pred hhhhCCCC---CCcccCcCCcccccccCCceEEEEEEeCHH
Confidence 98777641 2356787655422 22357999999754
No 6
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=99.86 E-value=2e-22 Score=197.98 Aligned_cols=259 Identities=18% Similarity=0.267 Sum_probs=168.6
Q ss_pred CceEEEecccccccccCCccccccccCCCCcCChHhHHHHHHHHHhhCCCcEEEEeeeecChhhHHHHHHHHhccCCccE
Q 012456 45 CCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNT 124 (463)
Q Consensus 45 ~~lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~i~~~~~DIIcLQEv~~~~~~~~~~l~~~l~~~gY~~ 124 (463)
.+++|+|||++++.|+....+. || ......|.+|+..+++.|...+|||+||||| +.+.+++...+...||.+
T Consensus 18 ~~~~v~s~n~l~~~~~~~~~~~-~~--~~~~~~w~~r~~~~~~ei~~~~ad~icLqev----~~~~~~~~p~l~~~gY~g 90 (361)
T KOG0620|consen 18 ETFTVLSYNILSQLYATSKLYM-YC--PSWALSWEYRRQLLLEEILNYNADILCLQEV----DRYHDFFSPELEASGYSG 90 (361)
T ss_pred ceEEeechhhhhhhhcccCCCc-cc--chhhccHHHHHHHHHHHHhCCCcceeecchh----hHHHHHccchhhhcCCcc
Confidence 4899999999999888877653 55 3356899999999999999999999999999 467788888888889999
Q ss_pred EEeccC------CCCCceeEEEEeCCcceEeeeEEEEeccccC-----------ceeeeEEeeeecccccccCCCCceEE
Q 012456 125 FSLART------NNRGDGLLTALHRDYFNVLNYRELLFNDFGD-----------RVAQLVHVESVVPFFQNQGGGQQEIL 187 (463)
Q Consensus 125 ~~~~~~------~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~~-----------r~~~~~~~~~~~~~~~~~~~~~~~v~ 187 (463)
.+.+++ ....+|||||+|.++|.++....+.++.... +....-..... +..+....+..+.
T Consensus 91 ~~~~k~~~~~~~~~~~dGcaiffk~s~f~li~~~~i~~n~~~~~~~~~~~~~~~~~~~~d~~~~~--l~~L~~~~~~~~~ 168 (361)
T KOG0620|consen 91 IFIEKTRMGEVELEKIDGCAIFFKPSLFQLIHSSAIELNQLALSRLPPNIAQLNRLTTLDNSGNK--LVSLKAELGNMVS 168 (361)
T ss_pred eeecccccchhhcccCceeeeeecchHHhhhhhhhhhhHHHHHhhcchhHHHHHhhhccccccch--hhhhhhhcCCcee
Confidence 998875 5568999999999999999887777654331 00000000000 1111111233333
Q ss_pred ----EEEeecCCCCCCCchhhHHHHHHHHHHHHHH----HHh----h---cCCCCCcEEEeecCCCccccchhhhhhcCC
Q 012456 188 ----IVNTHLLFPHDSSLSVVRLHQVYKILQYLEL----YQT----E---NKLNHIPIILCGDWNGSKRGHVYKFLRSQG 252 (463)
Q Consensus 188 ----v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~----~~~----~---~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g 252 (463)
++|+|+.|. ..+.++++.|+..++..+.. ..+ . ......|+++|||||+.|.++.|.++...+
T Consensus 169 ~~~~~~n~h~~~~--~~~~~vkl~qv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~gdfNs~p~~~v~~~~~~~~ 246 (361)
T KOG0620|consen 169 LPHLLLNTHILWD--LPYEDVKLFQVLTLLLELAPLSPEILKIYREGNLATRIASFPLLLCGDFNSTPLSPVYALLASGI 246 (361)
T ss_pred eccccccceeccC--CCccchHHHHHHHHhhcccccchhhhhhhccccccccccccceeeeccccCCCCccceeecccCC
Confidence 478999984 46778999999988877421 111 0 112357999999999999999999994433
Q ss_pred cccccccccccCCCCCCccccccccCcCCCccccccccccCC-CCCCCCchhhhHHHHHHHHHHHHhhh
Q 012456 253 FVSSYDVAHQYTDGDADAHKWVSHRNHRGNICGVDFIWLRNP-NQSRKPLQASWAEAVFSIIKCQLQKA 320 (463)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~w~s~~~~~~~~~~iD~i~~~~~-~~~~~~~~T~~~~~~~~~idy~~~~~ 320 (463)
....+...+.+ ........-... ..+ .+++-+-+.. ....++.||++...+.+++||+|...
T Consensus 247 ~~~~~~d~~~~-~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~ftn~t~~F~g~~DYIfys~ 309 (361)
T KOG0620|consen 247 LSPEDADNKDL-PLMSALGSKVNK---SYE--EMSHDQRRKLEYTTGEPRFTNYTPGFKGTLDYIFYSK 309 (361)
T ss_pred CCcchhhHhhc-cccccccccccc---ccc--ccchhhhcccccccCccccccccCCccceeeEEEEcc
Confidence 32221111110 000000000000 000 0222222222 34556669999999999999999543
No 7
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.84 E-value=4.4e-21 Score=180.75 Aligned_cols=215 Identities=21% Similarity=0.277 Sum_probs=153.9
Q ss_pred ceEEEecccccccccCCccccccccCCCCcCChHhHHHHHHHHHhhCCCcEEEEeeeecChhhHHHHHHHHh-ccCCccE
Q 012456 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERL-GNAGYNT 124 (463)
Q Consensus 46 ~lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~i~~~~~DIIcLQEv~~~~~~~~~~l~~~l-~~~gY~~ 124 (463)
.+||.|+|+++..|..+.+. .|+..+-+.+.....||+.|||||. ..++. .+.... ..+.|..
T Consensus 8 ~lriltlN~Wgip~~Sk~R~--------------~Rm~~~g~~l~~E~yDiv~LQEvWs-~eD~~-~L~~~~ss~yPysh 71 (422)
T KOG3873|consen 8 ELRILTLNIWGIPYVSKDRR--------------HRMDAIGDELASEKYDIVSLQEVWS-QEDFE-YLQSGCSSVYPYSH 71 (422)
T ss_pred eeeeeEeeccccccccchhH--------------HHHHHHhHHHhhcccchhhHHHHHH-HHHHH-HHHHhccccCchHH
Confidence 69999999999876665542 4788999999999999999999993 33432 333333 2345555
Q ss_pred EEeccCCCCCceeEEEEeCCcceEeeeEEEEecccc------------CceeeeEEeeeecccccccCCCCceEEEEEee
Q 012456 125 FSLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFG------------DRVAQLVHVESVVPFFQNQGGGQQEILIVNTH 192 (463)
Q Consensus 125 ~~~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~------------~r~~~~~~~~~~~~~~~~~~~~~~~v~v~ntH 192 (463)
++. ++-.+.|+++| ||+||++.....++-.+ .+......+.. +|+.|.++|||
T Consensus 72 ~FH--SGimGaGL~vf---SK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~----------~g~~v~~yntH 136 (422)
T KOG3873|consen 72 YFH--SGIMGAGLCVF---SKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLV----------GGRMVNLYNTH 136 (422)
T ss_pred hhh--cccccCceEEe---ecCchhhhhhhccccCCccceeeeccccccceeEEEEEee----------CCEEeeeeehh
Confidence 543 46668999999 88999887665554322 12222333333 77999999999
Q ss_pred cCCCCC---CCchhhHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCccccchhhhhhcCCcccccccccccC-----
Q 012456 193 LLFPHD---SSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYT----- 264 (463)
Q Consensus 193 L~~~~~---~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~~~~~~~~~~~----- 264 (463)
|+++.+ ..+-..|..|+..+.+.++..... ..-+|+|||||..|.+-.+++|++.|++|+|...|...
T Consensus 137 LHAeY~rq~D~YL~HR~~QAwdlaqfi~~t~q~----~~vVI~~GDLN~~P~dl~~~ll~~a~l~daw~~~h~~q~e~~~ 212 (422)
T KOG3873|consen 137 LHAEYDRQNDEYLCHRVAQAWDLAQFIRATRQN----ADVVILAGDLNMQPQDLGHKLLLSAGLVDAWTSLHLDQCESDS 212 (422)
T ss_pred ccccccccCchhhhHHHHHHHHHHHHHHHHhcC----CcEEEEecCCCCCccccceeeeeccchhhhHhhhchhhhcCcc
Confidence 988543 234557999999999999988763 56799999999999999999999999998886554210
Q ss_pred -------------CCCCCccccccccCcCCC--ccccccccccCCC
Q 012456 265 -------------DGDADAHKWVSHRNHRGN--ICGVDFIWLRNPN 295 (463)
Q Consensus 265 -------------~~~~~~~~w~s~~~~~~~--~~~iD~i~~~~~~ 295 (463)
.|+....+|++....... .+||||+|++...
T Consensus 213 ~r~s~~~~l~~g~tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~ 258 (422)
T KOG3873|consen 213 FRLSEDKELVEGNTCDSPLNCYTSAQKREDDPLGKRIDYVLVKPGD 258 (422)
T ss_pred cccchhhhhhcCCcccCcchhhhHHHhCCCCccceeeeEEEEcCcc
Confidence 123334677764443344 4789999998763
No 8
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=99.83 E-value=4.4e-20 Score=171.69 Aligned_cols=199 Identities=21% Similarity=0.318 Sum_probs=130.6
Q ss_pred eEEEecccccccccCCccccccccCCCCcCChHhHHHHHHHHHhhCCCcEEEEeeeecChhhHHHHHHHHhccCCccEEE
Q 012456 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTFS 126 (463)
Q Consensus 47 lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~i~~~~~DIIcLQEv~~~~~~~~~~l~~~l~~~gY~~~~ 126 (463)
|||+||||-+- ..|...++++|.+.+||||||||+......+ -...+...||+.++
T Consensus 1 mkI~SwNVNgi---------------------Rar~~~~~~~l~~~~pDVlclQEtK~~~~~f---p~~~~~~~GY~~~~ 56 (261)
T COG0708 1 MKIASWNVNGL---------------------RARLKKLLDWLEEEQPDVLCLQETKAQDEQF---PREELEALGYHHVF 56 (261)
T ss_pred CeeEEEehhhH---------------------HHHHHHHHHHHHHhCCCEEEEEecccCcccC---CHhHHhhCCceEEE
Confidence 68999999533 3478889999999999999999996433222 23445567996655
Q ss_pred eccCCCCCceeEEEEeCCcceEeeeEEEEecc--ccCceeeeEEeeeecccccccCCCCceEEEEEeecCCCCC--CCch
Q 012456 127 LARTNNRGDGLLTALHRDYFNVLNYRELLFND--FGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHD--SSLS 202 (463)
Q Consensus 127 ~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~~~v~v~ntHL~~~~~--~~~~ 202 (463)
.... +...|+||++|.. +.. ....++. ..+..++++.+.. . .|.|+|.++..+.+ ...-
T Consensus 57 ~~gq-KgysGVailsr~~---~~~-v~~g~~~~~~~d~e~R~I~a~~----------~--~~~v~~~Y~PnG~~~~~~k~ 119 (261)
T COG0708 57 NHGQ-KGYSGVAILSKKP---PDD-VRRGFPGEEEDDEEGRVIEAEF----------D--GFRVINLYFPNGSSIGLEKF 119 (261)
T ss_pred ecCc-CCcceEEEEEccC---chh-hhcCCCCCccccccCcEEEEEE----------C--CEEEEEEEcCCCCCCCCcch
Confidence 4433 4568999996644 332 2222332 2345677777765 3 39999998855332 1223
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCcccc-----------------------chhhhhhcCCccccccc
Q 012456 203 VVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG-----------------------HVYKFLRSQGFVSSYDV 259 (463)
Q Consensus 203 ~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s-----------------------~~~~~l~~~g~~~~~~~ 259 (463)
+.|+.-...+.+++++.... +.|+|||||||..|.. ..++.|.+.||+|+++.
T Consensus 120 ~yKl~f~~~l~~~l~~l~~~----~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~~ll~~G~~D~~R~ 195 (261)
T COG0708 120 DYKLRFLDALRNYLEELLKK----GKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEERAWFRRLLNAGFVDTFRL 195 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhc----CCCEEEecccccCCchhcccCchhhhhcCCCCCCCHHHHHHHHHHHHcchhhhhHh
Confidence 34555555666666666553 6899999999988631 12445557899999987
Q ss_pred ccccCCCCCCccccccccCcCC---CccccccccccCC
Q 012456 260 AHQYTDGDADAHKWVSHRNHRG---NICGVDFIWLRNP 294 (463)
Q Consensus 260 ~~~~~~~~~~~~~w~s~~~~~~---~~~~iD~i~~~~~ 294 (463)
.++- ...+||.+++.... .--||||+++++.
T Consensus 196 ~~p~----~~~YTwW~YR~~~~~~n~G~RID~~l~S~~ 229 (261)
T COG0708 196 FHPE----PEKYTWWDYRANAARRNRGWRIDYILVSPA 229 (261)
T ss_pred hCCC----CCcccccccccchhhhcCceeEEEEEeCHH
Confidence 7654 33489988876311 1245999999864
No 9
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.81 E-value=1.9e-19 Score=167.01 Aligned_cols=204 Identities=18% Similarity=0.148 Sum_probs=126.1
Q ss_pred ceEEEecccccccccCCccccccccCCCCcCChHhHHHHHHHHHhhCCCcEEEEeeeec--C--hhhHHHHHHHHhccCC
Q 012456 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWV--G--NEELVLMYQERLGNAG 121 (463)
Q Consensus 46 ~lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~i~~~~~DIIcLQEv~~--~--~~~~~~~l~~~l~~~g 121 (463)
.++|+||||.... . ...+..+.+.+.+.|....+|||||||++. + ...+.+.........+
T Consensus 9 ~~~v~TyNih~~~------------~---~~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~ 73 (259)
T COG3568 9 RFKVLTYNIHKGF------------G---AFDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGL 73 (259)
T ss_pred eeEEEEEEEEEcc------------C---ccCceecHHHHHHHHHhhccCeeeeecccccccccccccchhHHHHHHhcC
Confidence 3899999996442 1 114445688999999999999999999972 1 1111122111111112
Q ss_pred cc-EEEecc----CCCCCceeEEEEeCCcceEeeeEEEEeccc---cCceeeeEEeeeecccccccCCCCceEEEEEeec
Q 012456 122 YN-TFSLAR----TNNRGDGLLTALHRDYFNVLNYRELLFNDF---GDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHL 193 (463)
Q Consensus 122 Y~-~~~~~~----~~~~~~G~ai~~r~sr~~i~~~~~~~~~~~---~~r~~~~~~~~~~~~~~~~~~~~~~~v~v~ntHL 193 (463)
.. +++... .+....|++++ |++|+.......++.. ..|.+..+.+... .|+++.|+|+||
T Consensus 74 ~~~~~~~~~~~a~~~~~~~GnaiL---S~~pi~~v~~~~lp~~~~~~~Rgal~a~~~~~---------~g~~l~V~~~HL 141 (259)
T COG3568 74 APYWWSGAAFGAVYGEGQHGNAIL---SRLPIRDVENLALPDPTGLEPRGALLAEIELP---------GGKPLRVINAHL 141 (259)
T ss_pred CccccchhhhhhhcccceeeeEEE---ecCcccchhhccCCCCCCCCCceeEEEEEEcC---------CCCEEEEEEEec
Confidence 11 111111 23346799999 5788888888888753 3566666666541 477999999999
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCccccchhhhhhcCCccc---cc-ccccccCCCCCC
Q 012456 194 LFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVS---SY-DVAHQYTDGDAD 269 (463)
Q Consensus 194 ~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~~---~~-~~~~~~~~~~~~ 269 (463)
.+. ...|+.|+..|++.+.-. ...|+|+|||||+.|.++.|+..... ..+ .. +...+.. +..
T Consensus 142 ~l~-----~~~R~~Q~~~L~~~~~l~------~~~p~vl~GDFN~~p~s~~yr~~~~~-~~~~~~~~~~~~~~a~--~~~ 207 (259)
T COG3568 142 GLS-----EESRLRQAAALLALAGLP------ALNPTVLMGDFNNEPGSAEYRLAARS-PLNAQAALTGAFAPAV--GRT 207 (259)
T ss_pred ccc-----HHHHHHHHHHHHhhccCc------ccCceEEEccCCCCCCCccceeccCC-chhhccccccccCccc--Ccc
Confidence 653 355999999998822111 12399999999999999999766322 111 10 1111100 000
Q ss_pred ccccccccCcCCCccccccccccCC
Q 012456 270 AHKWVSHRNHRGNICGVDFIWLRNP 294 (463)
Q Consensus 270 ~~~w~s~~~~~~~~~~iD~i~~~~~ 294 (463)
..+|.+..+ ..+|||||+++.
T Consensus 208 ~~tfps~~p----~lriD~Ifvs~~ 228 (259)
T COG3568 208 IRTFPSNTP----LLRLDRIFVSKE 228 (259)
T ss_pred cCCCCCCCc----cccccEEEecCc
Confidence 235655543 358999999885
No 10
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.80 E-value=8.6e-19 Score=167.67 Aligned_cols=199 Identities=21% Similarity=0.330 Sum_probs=124.7
Q ss_pred eEEEecccccccccCCccccccccCCCCcCChHhHHHHHHHHHhhCCCcEEEEeeeecChhhHHHHHHHHhccCCccEEE
Q 012456 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTFS 126 (463)
Q Consensus 47 lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~i~~~~~DIIcLQEv~~~~~~~~~~l~~~l~~~gY~~~~ 126 (463)
|||+||||.... .+.+.++++|+.++||||||||+..... ......+...||..++
T Consensus 1 mri~t~Ni~g~~---------------------~~~~~~~~~l~~~~~DIi~LQE~~~~~~---~~~~~~~~~~g~~~~~ 56 (254)
T TIGR00195 1 MKIISWNVNGLR---------------------ARLHKGLAWLKENQPDVLCLQETKVQDE---QFPLEPFHKEGYHVFF 56 (254)
T ss_pred CEEEEEEcCcHH---------------------HhHHHHHHHHHhcCCCEEEEEecccchh---hCCHHHhhcCCcEEEE
Confidence 699999996431 2355589999999999999999953221 1223334556887776
Q ss_pred eccCCCCCceeEEEEeCCcceEeeeEEEEeccccCceeeeEEeeeecccccccCCCCceEEEEEeecCCCC--CCCchhh
Q 012456 127 LARTNNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPH--DSSLSVV 204 (463)
Q Consensus 127 ~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~v~ntHL~~~~--~~~~~~~ 204 (463)
... ....|+||++|.....+.. .+.... .+..++++.++. ..+.|+|||+.... .......
T Consensus 57 ~~~--~g~~Gvailsr~~~~~~~~--~~~~~~-~~~~~r~i~~~~------------~~~~l~~~~~p~~~~~~~~~~~~ 119 (254)
T TIGR00195 57 SGQ--KGYSGVAIFSKEEPLSVRR--GFGVEE-EDAEGRIIMAEF------------DSFLVINGYFPNGSRDDSEKLPY 119 (254)
T ss_pred ecC--CCcceEEEEEcCCcceEEE--CCCCcc-cccCCCEEEEEE------------CCEEEEEEEccCCCCCCCccHHH
Confidence 543 3456999997754333211 111111 122334444433 24889999996421 1112234
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCcccc--------------------chhhhhhcCCcccccccccccC
Q 012456 205 RLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDVAHQYT 264 (463)
Q Consensus 205 R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s--------------------~~~~~l~~~g~~~~~~~~~~~~ 264 (463)
|..+...|.+.+..... .+.|+|+|||||..|.+ ..++.+.+.|++|+|+..++.
T Consensus 120 r~~~~~~l~~~~~~~~~----~~~pvIi~GDfN~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~l~~~~l~D~~r~~~~~- 194 (254)
T TIGR00195 120 KLQWLEALQNYLEKLVD----KDKPVLICGDMNIAPTEIDLHSPDENRNHTGFLPEEREWLDRLLEAGLVDTFRKFNPD- 194 (254)
T ss_pred HHHHHHHHHHHHHHHHh----cCCcEEEEeecccCCChhhccChhhcCCCcCcChHHHHHHHHHHHcCCEeeecccCCC-
Confidence 66677777777776543 25799999999999865 246766677899998766653
Q ss_pred CCCCCccccccccCc---CCCccccccccccCC
Q 012456 265 DGDADAHKWVSHRNH---RGNICGVDFIWLRNP 294 (463)
Q Consensus 265 ~~~~~~~~w~s~~~~---~~~~~~iD~i~~~~~ 294 (463)
...+||.+.... .....+|||||++..
T Consensus 195 ---~~~~T~~~~~~~~~~~~~g~RID~i~~s~~ 224 (254)
T TIGR00195 195 ---EGAYSWWDYRTKARDRNRGWRIDYFLVSEP 224 (254)
T ss_pred ---CCCCcccCCcCCccccCCceEEEEEEECHH
Confidence 335788765432 122357999999753
No 11
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=2.5e-18 Score=164.49 Aligned_cols=200 Identities=22% Similarity=0.298 Sum_probs=119.6
Q ss_pred eEEEecccccccccCCccccccccCCCCcCChHhHHHHH-HHHHhhCCCcEEEEeeeecChhhHHHHHHHHhccCCccEE
Q 012456 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTI-LDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTF 125 (463)
Q Consensus 47 lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i-~~~i~~~~~DIIcLQEv~~~~~~~~~~l~~~l~~~gY~~~ 125 (463)
|||+||||.... .+.+.+ ++.|+..+||||||||++... .......+...||..+
T Consensus 1 lri~t~Nv~g~~---------------------~~~~~~~~~~l~~~~~DIv~LQE~~~~~---~~~~~~~~~~~g~~~~ 56 (255)
T TIGR00633 1 MKIISWNVNGLR---------------------ARLHKLFLDWLKEEQPDVLCLQETKVAD---EQFPAELFEELGYHVF 56 (255)
T ss_pred CEEEEEecccHH---------------------HHhhccHHHHHHhcCCCEEEEEeccCch---hhCCHhHhccCCceEE
Confidence 699999996442 134455 999999999999999996321 1122223445688877
Q ss_pred EeccCCCCCceeEEEEeCCcceEeeeEEEEecc-ccCceeeeEEeeeecccccccCCCCceEEEEEeecCCCCC--CCch
Q 012456 126 SLARTNNRGDGLLTALHRDYFNVLNYRELLFND-FGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHD--SSLS 202 (463)
Q Consensus 126 ~~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~v~v~ntHL~~~~~--~~~~ 202 (463)
+.........|+||++|. ++..... .+.. ..+..++.+.+. .+.+.|+++|+..+.. ....
T Consensus 57 ~~~~~~~~~~G~ailsr~---~~~~~~~-~~~~~~~~~~~r~l~~~------------~~~~~i~~vy~p~~~~~~~~~~ 120 (255)
T TIGR00633 57 FHGAKSKGYSGVAILSKV---EPLDVRY-GFGGEEHDEEGRVITAE------------FDGFTVVNVYVPNGGSRGLERL 120 (255)
T ss_pred EeecccCCcceEEEEEcC---CcceEEE-CCCCCcccCCCcEEEEE------------ECCEEEEEEEccCCCCCCchhH
Confidence 765443345799999653 4433222 1111 112223333332 2478999999954321 1111
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCcccc--------------------chhhhhhcCCcccccccccc
Q 012456 203 VVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDVAHQ 262 (463)
Q Consensus 203 ~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s--------------------~~~~~l~~~g~~~~~~~~~~ 262 (463)
..|..+...+.+.+.+... ...|+|+|||||+.+.. ..++.+.+.|+.|.|+..++
T Consensus 121 ~~r~~~~~~l~~~~~~~~~----~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 196 (255)
T TIGR00633 121 EYKLQFWDALFQYYEKELD----AGKPVIICGDMNVAHTEIDLGNPKENKGNAGFTPEEREWFDELLEAGLVDTFRHFNP 196 (255)
T ss_pred HHHHHHHHHHHHHHHHHHh----cCCcEEEEeecccCCChHHccChhhcCCCCCcCHHHHHHHHHHHHcCCEecchhhCC
Confidence 3455566666665544332 25699999999998742 23555556889998876554
Q ss_pred cCCCCCCccccccccCcC---CCccccccccccC
Q 012456 263 YTDGDADAHKWVSHRNHR---GNICGVDFIWLRN 293 (463)
Q Consensus 263 ~~~~~~~~~~w~s~~~~~---~~~~~iD~i~~~~ 293 (463)
.. ...+||.+..... ....+|||||++.
T Consensus 197 ~~---~~~~T~~~~~~~~~~~~~~~rID~i~~s~ 227 (255)
T TIGR00633 197 DT---EGAYTWWDYRSGARDRNRGWRIDYFLVSE 227 (255)
T ss_pred CC---CCcCcCcCCccCccccCCceEEEEEEECH
Confidence 31 1246777654311 1235799999875
No 12
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=99.77 E-value=8e-18 Score=159.47 Aligned_cols=198 Identities=18% Similarity=0.242 Sum_probs=118.9
Q ss_pred eEEEecccccccccCCccccccccCCCCcCChHhHH-HHHHHHHhhCCCcEEEEeeeecChhhHHHHHHHHhccCCccEE
Q 012456 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRN-QTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTF 125 (463)
Q Consensus 47 lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~-~~i~~~i~~~~~DIIcLQEv~~~~~~~~~~l~~~l~~~gY~~~ 125 (463)
|||+||||.+-. .|. ..+.++|.+.+||||||||+......+ .+...||..+
T Consensus 1 mki~swNVNgir---------------------~~~~~~~~~~l~~~~~DIiclQEtK~~~~~~------~~~~~gY~~~ 53 (250)
T PRK13911 1 MKLISWNVNGLR---------------------ACMTKGFMDFFNSVDADVFCIQESKMQQEQN------TFEFKGYFDF 53 (250)
T ss_pred CEEEEEEeCChh---------------------HhhhhhHHHHHHhcCCCEEEEEeeccccccc------ccccCCceEE
Confidence 699999995441 233 358899999999999999996433221 1334589766
Q ss_pred EeccCCCCCceeEEEEeCCcceEeeeEEEEecc-ccCceeeeEEeeeecccccccCCCCceEEEEEeecCCCCCCCchhh
Q 012456 126 SLARTNNRGDGLLTALHRDYFNVLNYRELLFND-FGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVV 204 (463)
Q Consensus 126 ~~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~v~v~ntHL~~~~~~~~~~~ 204 (463)
......+...|+||++|.....+. ..+.. ..+..++.+..+. ..+.|+|++...+. ....
T Consensus 54 ~~~~~~kgy~GVAi~~k~~~~~v~----~~~~~~~~d~eGR~I~~~~------------~~~~l~nvY~Pn~~---~~~~ 114 (250)
T PRK13911 54 WNCAIKKGYSGVVTFTKKEPLSVS----YGINIEEHDKEGRVITCEF------------ESFYLVNVYTPNSQ---QALS 114 (250)
T ss_pred EEecccCccceEEEEEcCCchheE----EcCCCCcccccCCEEEEEE------------CCEEEEEEEecCCC---CCCc
Confidence 543333456799999876522221 11221 1244566665554 36999999885422 2223
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCcccc--------------------chhhhhhcCCcccccccccccC
Q 012456 205 RLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDVAHQYT 264 (463)
Q Consensus 205 R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s--------------------~~~~~l~~~g~~~~~~~~~~~~ 264 (463)
|+.+-..+...+.++.... ..+.|+|+|||||..+.. ..++.+...|++|+++..|+..
T Consensus 115 r~~~K~~~~~~~~~~l~~l-~~~~~~Ii~GD~Nva~~~~D~~~~~~~~~~~gf~~~er~~f~~~l~~gl~D~~R~~~p~~ 193 (250)
T PRK13911 115 RLSYRMSWEVEFKKFLKAL-ELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYPNK 193 (250)
T ss_pred chHHHHHHHHHHHHHHHhc-ccCCCEEEEccccCCCChhhccChhhcCCCCCcCHHHHHHHHHHHhcCCeehhhhhCCCC
Confidence 4444333333333332221 125699999999997631 1244444668999887766531
Q ss_pred CCCCCccccccccC---cCCCccccccccccCC
Q 012456 265 DGDADAHKWVSHRN---HRGNICGVDFIWLRNP 294 (463)
Q Consensus 265 ~~~~~~~~w~s~~~---~~~~~~~iD~i~~~~~ 294 (463)
...+||.+... ....-.+||||+++..
T Consensus 194 ---~~~yTww~~~~~~~~~n~g~RIDyilvs~~ 223 (250)
T PRK13911 194 ---EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223 (250)
T ss_pred ---CCCCccCCCcCCccccCCcceEEEEEEChH
Confidence 24578877542 1222357999999864
No 13
>PRK05421 hypothetical protein; Provisional
Probab=99.77 E-value=7.1e-18 Score=161.80 Aligned_cols=151 Identities=19% Similarity=0.099 Sum_probs=91.7
Q ss_pred CCceEEEecccccccccCCccccccccCCCCcCChHhHHHHHHHHHhhCCCcEEEEeeeecChhhHHHHHHHHhccCCcc
Q 012456 44 ECCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYN 123 (463)
Q Consensus 44 ~~~lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~i~~~~~DIIcLQEv~~~~~~~~~~l~~~l~~~gY~ 123 (463)
+++||||||||+.... . +....++.| ..+|||||||||+... ... ..+...|+.
T Consensus 41 ~~~lri~t~NI~~~~~----------------~----~~~~~l~~l-~~~~DiI~LQEv~~~~-~~~----~~~~~~~~~ 94 (263)
T PRK05421 41 EERLRLLVWNIYKQQR----------------A----GWLSVLKNL-GKDADLVLLQEAQTTP-ELV----QFATANYLA 94 (263)
T ss_pred CCceeEEEEEcccccc----------------c----cHHHHHHHh-ccCCCEEEEEecccCc-chH----HHhhcccch
Confidence 4689999999975531 0 123444455 8899999999996322 221 222223333
Q ss_pred EEEe--ccCCCCCceeEEEEeCCcceEeeeEEEEeccc---cCceeeeEEeeeecccccccCCCCceEEEEEeecCCCCC
Q 012456 124 TFSL--ARTNNRGDGLLTALHRDYFNVLNYRELLFNDF---GDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHD 198 (463)
Q Consensus 124 ~~~~--~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~~---~~r~~~~~~~~~~~~~~~~~~~~~~~v~v~ntHL~~~~~ 198 (463)
+.+. ........|+||+ ||+|+.....+..... ..|......+.. .+++.+.|+||||.+..
T Consensus 95 ~~~~~~~~~~~~~~GvaiL---SR~pi~~~~~~~~~~~~~~~~r~~l~a~~~~---------~~g~~l~v~ntHl~~~~- 161 (263)
T PRK05421 95 ADQAPAFVLPQHPSGVMTL---SKAHPVYCCPLREREPWLRLPKSALITEYPL---------PNGRTLLVVNIHAINFS- 161 (263)
T ss_pred HHhccccccCCCccceeEe---eecccceeeccCCCCccccCcceeEEEEEEe---------CCCCEEEEEEECccccC-
Confidence 3221 1122346799999 7788877654422211 123333444332 15568999999995432
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCccc
Q 012456 199 SSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKR 241 (463)
Q Consensus 199 ~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~ 241 (463)
.....|..|+..|.+.+... ..|+|||||||+.+.
T Consensus 162 -~~~~~r~~q~~~l~~~~~~~-------~~p~Il~GDFN~~~~ 196 (263)
T PRK05421 162 -LGVDVYSKQLEPIGDQIAHH-------SGPVILAGDFNTWSR 196 (263)
T ss_pred -cChHHHHHHHHHHHHHHHhC-------CCCEEEEcccccCcc
Confidence 12356888988888777543 459999999999764
No 14
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.69 E-value=6.5e-16 Score=145.28 Aligned_cols=151 Identities=21% Similarity=0.260 Sum_probs=85.5
Q ss_pred hHHHHHHHHHhhCCCcEEEEeeeecChhhHHHHHHHHhccCCc-cEEEeccCCC----CCceeEEEEeCCcceEeeeEEE
Q 012456 80 NRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGY-NTFSLARTNN----RGDGLLTALHRDYFNVLNYREL 154 (463)
Q Consensus 80 ~R~~~i~~~i~~~~~DIIcLQEv~~~~~~~~~~l~~~l~~~gY-~~~~~~~~~~----~~~G~ai~~r~sr~~i~~~~~~ 154 (463)
.+.+.|.+.|...+||||||||++ .......+...+....+ .......... ...|++|++|.+..........
T Consensus 16 ~~~~~i~~~i~~~~~Dii~LQEv~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~~ 93 (249)
T PF03372_consen 16 RKRREIAQWIAELDPDIIALQEVR--NDDLSELLEEQLRGYLGYYGSFWPGNSPPSDAGGYGVAILSRSPIFSSVSYVFS 93 (249)
T ss_dssp HHHHHHHHHHHHHT-SEEEEEEEE--SHHHHHHHHHHHHTCTTHEEEEEETSSSTTCSSSEEEEEEESSCCCEEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCEEEEecch--hhhhhhhhhhhcccccccccceeccccccccccCceEEEEEccccccccccccc
Confidence 355669999999999999999995 22344555555554443 3333222221 3579999988764433333332
Q ss_pred EeccccCceeeeEEeeeecccccccCCCCceEEEEEeecCCCCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCCcEEEee
Q 012456 155 LFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCG 234 (463)
Q Consensus 155 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~G 234 (463)
......................+. .++.|.|+|+|+.+ ....|..|...+++.+....... ...|+||||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~v~~~H~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~G 163 (249)
T PF03372_consen 94 LFSKPGIRIFRRSSKSKGIVPVSI---NGKPITVVNVHLPS-----SNDERQEQWRELLARIQKIYADN--PNEPVIVMG 163 (249)
T ss_dssp EESSSTTCEEEEEEEEEEEEEEEE---ETEEEEEEEEETTS-----HHHHHHHHHHHHHHHHHHHHHTS--SCCEEEEEE
T ss_pred cccccccccccccccccccccccc---cceEEEeeeccccc-----cchhhhhhhhhhhhhhhhccccc--ccceEEEEe
Confidence 232222222111111110000000 26899999999954 23446666778888887776642 123799999
Q ss_pred cCCCcccc
Q 012456 235 DWNGSKRG 242 (463)
Q Consensus 235 DFN~~p~s 242 (463)
|||+.+.+
T Consensus 164 DfN~~~~~ 171 (249)
T PF03372_consen 164 DFNSRPDS 171 (249)
T ss_dssp E-SS-BSS
T ss_pred ecccCCcc
Confidence 99998865
No 15
>PTZ00297 pantothenate kinase; Provisional
Probab=99.68 E-value=1.1e-15 Score=173.88 Aligned_cols=169 Identities=21% Similarity=0.332 Sum_probs=106.9
Q ss_pred CCceEEEecccccccccCCccccccccCCCCcCChHhHHHHHHHHHhhC-CCcEEEEeeeecCh---------hhHHHHH
Q 012456 44 ECCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICE-RSSVICLQEFWVGN---------EELVLMY 113 (463)
Q Consensus 44 ~~~lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~i~~~-~~DIIcLQEv~~~~---------~~~~~~l 113 (463)
..+||||||||.... . .| ..| ..++|...|+.. +|||||||||.... ......+
T Consensus 8 ~~~l~VlTyNv~~~~---~-----~~------~~~--~~~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~ 71 (1452)
T PTZ00297 8 CAQARVLSYNFNILP---R-----GC------GGF--QHERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKML 71 (1452)
T ss_pred CCceEEEEEEccccC---C-----Cc------ccc--cHHHHHHHHHhccCCCEEEEecccccccccccccccchhhHHH
Confidence 458999999985331 0 01 122 246777788884 78999999994111 0123445
Q ss_pred HHHhccCCccEEEeccCC---C-------CCceeEEEEeCCcceEeeeEEEEecccc------CceeeeEEeeeeccccc
Q 012456 114 QERLGNAGYNTFSLARTN---N-------RGDGLLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFFQ 177 (463)
Q Consensus 114 ~~~l~~~gY~~~~~~~~~---~-------~~~G~ai~~r~sr~~i~~~~~~~~~~~~------~r~~~~~~~~~~~~~~~ 177 (463)
...+...||.++...+.. . ...|+||+ |||||+....+.++... .|....+.+.. +.
T Consensus 72 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~AIL---SR~PI~~~~~~~l~~~~~~~~~~~RG~L~a~I~v--p~-- 144 (1452)
T PTZ00297 72 VDELKARGFHHYVISKQPSYLTMLRYNVCSDNGLIIA---SRFPIWQRGSYTFRNHERGEQSVRRGCLFAEVEV--PL-- 144 (1452)
T ss_pred HHHHHhcCCceeEeecCccccccccCccccCCEEEEE---ECCChhhceeeecCcccccccccccceEEEEEEc--cc--
Confidence 666667788776543322 1 45799999 89999999999887432 23223333332 00
Q ss_pred ccCCCCceEEEEEeecCCCCCCCchhhHHHHHHHHHHHHHHHHh----hc-CCCCCcEEEeecCCCc
Q 012456 178 NQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQT----EN-KLNHIPIILCGDWNGS 239 (463)
Q Consensus 178 ~~~~~~~~v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~----~~-~~~~~pvIl~GDFN~~ 239 (463)
..+.++.+.|+||||.+..+. ..|..|+.++.++++.... .. .....|+|||||||..
T Consensus 145 -~~g~~~~v~v~~tHL~~~~~~---~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~ 207 (1452)
T PTZ00297 145 -AEGGSQRIVFFNVHLRQEDSL---PSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNIN 207 (1452)
T ss_pred -cCCCCceEEEEEeCCCCCCCc---chHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCc
Confidence 001236899999999774332 4588899988888875211 11 1135699999999965
No 16
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.67 E-value=3.2e-15 Score=142.48 Aligned_cols=167 Identities=17% Similarity=0.135 Sum_probs=107.4
Q ss_pred CceEEEecccccccccCCccccccccCCCCcCChHhHHHHHHHHHhhCCCcEEEEeeeecChhhHHHHHHHHh---c---
Q 012456 45 CCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERL---G--- 118 (463)
Q Consensus 45 ~~lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~i~~~~~DIIcLQEv~~~~~~~~~~l~~~l---~--- 118 (463)
..|+||||||.... .....|..|+..|++.|+ ++|||++|||.. .....+..++ .
T Consensus 16 ~~l~I~SfNIr~fg--------------d~k~~~~~r~~~i~~il~--~~DIiglQEV~d---~q~~~l~~ll~~Ln~~~ 76 (276)
T smart00476 16 ASLRICAFNIQSFG--------------DSKMSNATLMSIIVKILS--RYDIALVQEVRD---SDLSAVPKLMDQLNSDS 76 (276)
T ss_pred CcEEEEEEECcccC--------------CccccHHHHHHHHHHHhc--cCCEEEEEEeec---chhHHHHHHHHHHhhcC
Confidence 46999999997331 234679999999999999 789999999952 2222333333 2
Q ss_pred cCCccEEEeccCCC--CCceeEEEEeCCcceEeeeEEEEecccc-------CceeeeEEeeeecccccccCCCCceEEEE
Q 012456 119 NAGYNTFSLARTNN--RGDGLLTALHRDYFNVLNYRELLFNDFG-------DRVAQLVHVESVVPFFQNQGGGQQEILIV 189 (463)
Q Consensus 119 ~~gY~~~~~~~~~~--~~~G~ai~~r~sr~~i~~~~~~~~~~~~-------~r~~~~~~~~~~~~~~~~~~~~~~~v~v~ 189 (463)
..+|.++..++.+. .++-.+++||++++.+++...+ ++.. .|...++.+.. +...++.|.++
T Consensus 77 ~~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f--~d~~~~~~~~F~ReP~~~~F~~-------~~~~~~~F~li 147 (276)
T smart00476 77 PNTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLY--DDGCECGNDVFSREPFVVKFSS-------PSTAVKEFVIV 147 (276)
T ss_pred CCCceEEecCCCCCCCCCEEEEEEEecceEEEccccee--cCCCCCccccccccceEEEEEe-------CCCCCccEEEE
Confidence 13688777665433 3577999999999999987554 4321 23333333332 11134689999
Q ss_pred EeecCCCCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCccc---cchhhhh
Q 012456 190 NTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKR---GHVYKFL 248 (463)
Q Consensus 190 ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~---s~~~~~l 248 (463)
|+|+.. ..+..++..|.+.+.....+ ....|+||+||||+.+. ...++.|
T Consensus 148 ~~H~~p-------~~~~~e~~aL~~v~~~~~~~--~~~~~villGDFNa~~~y~~~~~~~~i 200 (276)
T smart00476 148 PLHTTP-------EAAVAEIDALYDVYLDVRQK--WGTEDVIFMGDFNAGCSYVTKKQWSSI 200 (276)
T ss_pred EecCCh-------HHHHHHHHHHHHHHHHHHHh--hccCCEEEEccCCCCCCccChhhhhhh
Confidence 999943 22445555555544443332 23679999999999763 4444444
No 17
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.64 E-value=3.5e-15 Score=135.65 Aligned_cols=192 Identities=16% Similarity=0.165 Sum_probs=131.4
Q ss_pred CceEEEecccccccccCCccccccccCCCCcCChHhHHHHHHHHHhhCCCcEEEEeeeecChhhHHHHHHHHhccCCccE
Q 012456 45 CCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNT 124 (463)
Q Consensus 45 ~~lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~i~~~~~DIIcLQEv~~~~~~~~~~l~~~l~~~gY~~ 124 (463)
..++++||||-.. .-.+...|++.|...|+-++||||||||| .+...+.+++. . ..|..
T Consensus 98 ~~~S~~~WnidgL----------------dln~l~~RMrAv~H~i~l~sPdiiflQEV---~p~~y~~~~K~-~-s~y~i 156 (349)
T KOG2756|consen 98 SMFSLITWNIDGL----------------DLNNLSERMRAVCHYLALYSPDVIFLQEV---IPPYYSYLKKR-S-SNYEI 156 (349)
T ss_pred cEEEEEEeecccc----------------ccchHHHHHHHHHHHHHhcCCCEEEEeec---CchhhHHHHHh-h-hheeE
Confidence 5689999999433 12345579999999999999999999999 34555666552 2 24655
Q ss_pred EEeccCCCCCceeEEEEeCCcceEeeeEEEEecccc-CceeeeEEeeeecccccccCCCCceEEEEEeecCCCCCCCchh
Q 012456 125 FSLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFG-DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSV 203 (463)
Q Consensus 125 ~~~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~v~v~ntHL~~~~~~~~~~ 203 (463)
++...... .|.+++ .++++.+.+...+.|++.. .|..++++.+. +|.++.+.|+||.++.. ...
T Consensus 157 ~~~~~~~~--~~~~~l-~~s~~~Vks~~~i~F~NS~M~R~L~I~Ev~v----------~G~Kl~l~tsHLEStr~--h~P 221 (349)
T KOG2756|consen 157 ITGHEEGY--FTAIML-KKSRVKVKSQEIIPFPNSKMMRNLLIVEVNV----------SGNKLCLMTSHLESTRG--HAP 221 (349)
T ss_pred EEecccee--eeeeee-ehhhcCccccceeccCcchhhheeEEEEEee----------cCceEEEEeccccCCCC--CCh
Confidence 55433222 343443 4588999888889887644 45556666665 88889999999988542 235
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCccccchhhhhhcCCcccccccccccCCCCCCccccccccC
Q 012456 204 VRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRN 278 (463)
Q Consensus 204 ~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~w~s~~~ 278 (463)
.|..|....++.+++..... ++..||+.||+|-..... -+.=.-.+.+|.|+..... +...+||.+..|
T Consensus 222 ~r~~qF~~~~~k~~EaIe~l--PnA~ViFGGD~NlrD~ev-~r~~lPD~~vDvWE~lg~p---~~~~FTwDT~~N 290 (349)
T KOG2756|consen 222 ERMNQFKMVLKKMQEAIESL--PNATVIFGGDTNLRDREV-TRCGLPDNIVDVWEFLGKP---KHCQFTWDTQMN 290 (349)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCceEEEcCcccchhhhc-ccCCCCchHHHHHHHhCCC---CcCceeeecccC
Confidence 68888888888777776654 678899999999743221 1111133566777765422 245688988877
No 18
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.43 E-value=2.2e-12 Score=121.02 Aligned_cols=159 Identities=16% Similarity=0.106 Sum_probs=98.5
Q ss_pred CceEEEecccccccccCCccccccccCCCCcCChHhHHHHHHHHHhhC-CCcEEEEeeeecChhhHH-------------
Q 012456 45 CCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICE-RSSVICLQEFWVGNEELV------------- 110 (463)
Q Consensus 45 ~~lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~i~~~-~~DIIcLQEv~~~~~~~~------------- 110 (463)
..++|+|||+....+.. ..+| .-.+.+.|... ++||+++||+. +....
T Consensus 23 ~~~~~~twn~qg~s~~~-------------~~kw---~~~v~~l~~~~~~~DIla~QEag--s~p~~a~~~~~~~~~~g~ 84 (271)
T PRK15251 23 EDYKVATWNLQGSSAST-------------ESKW---NVNVRQLLSGENPADILMVQEAG--SLPSSAVPTGRHVQPGGV 84 (271)
T ss_pred ccceEEEeecCCCCCCC-------------hhhh---hhhHHHHhcCCCCCCEEEEEecC--CCcccccccccccccccc
Confidence 46999999997553222 2345 33466777765 69999999994 21111
Q ss_pred ----HHHHHHhc---cCCccEEEecc--CCCCCceeEEEEeCCcceEeeeEEEEeccccCceeeeEEeeeecccccccCC
Q 012456 111 ----LMYQERLG---NAGYNTFSLAR--TNNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGG 181 (463)
Q Consensus 111 ----~~l~~~l~---~~gY~~~~~~~--~~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 181 (463)
+.+.-.+. +-++.++|..+ .++..-|+||+ ||++..+...+.++....|....++ .
T Consensus 85 ~~~v~ey~w~l~~~srpgm~YiY~~aiD~~ggr~glAIl---Sr~~a~~~~~l~~p~~~~Rpilgi~--i---------- 149 (271)
T PRK15251 85 GIPIDEYTWNLGTRSRPNQVYIYYSRVDVGANRVNLAIV---SRRRADEVIVLRPPTVASRPIIGIR--I---------- 149 (271)
T ss_pred ccCcccEEEEccCccCCCceEEEEecccCCCCceeEEEE---ecccccceEEecCCCCcccceEEEE--e----------
Confidence 00000111 12344444432 23445799999 7777776666655533334333332 2
Q ss_pred CCceEEEEEeecCCCCCCCchhhHHHHHHHHHHHHH-HHHhhcCCCCCcEEEeecCCCccccchhhhh
Q 012456 182 GQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLE-LYQTENKLNHIPIILCGDWNGSKRGHVYKFL 248 (463)
Q Consensus 182 ~~~~v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~-~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l 248 (463)
. .+.+++||+.+.. ...+.+|+..+.+++. .. +..|+++|||||..|++..+.++
T Consensus 150 ~--~~~ffstH~~a~~----~~da~aiV~~I~~~f~~~~------~~~pw~I~GDFNr~P~sl~~~l~ 205 (271)
T PRK15251 150 G--NDVFFSIHALANG----GTDAGAIVRAVHNFFRPNM------RHINWMIAGDFNRSPDRLESTLD 205 (271)
T ss_pred c--CeEEEEeeecCCC----CccHHHHHHHHHHHHhhcc------CCCCEEEeccCCCCCcchhhhhc
Confidence 2 2789999996642 2348888888887775 21 24799999999999999977776
No 19
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.38 E-value=3.3e-13 Score=120.12 Aligned_cols=102 Identities=16% Similarity=0.249 Sum_probs=92.7
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhc-----ccc
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN-----LSC 395 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~-----~~~ 395 (463)
...+..+|...|+|+. |.|+.+||+.+|.+.+. .+++.+.|+.||.+||.+.+|+|+++|| ..||. +.+
T Consensus 56 ~~~~~~~f~~vD~d~s-g~i~~~eLq~aLsn~~~----~~Fs~~TcrlmI~mfd~~~~G~i~f~EF-~~Lw~~i~~Wr~v 129 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRS-GRILAKELQQALSNGTW----SPFSIETCRLMISMFDRDNSGTIGFKEF-KALWKYINQWRNV 129 (221)
T ss_pred cHHHHHHHHhhCcccc-ccccHHHHHHHhhcCCC----CCCCHHHHHHHHHHhcCCCCCccCHHHH-HHHHHHHHHHHHH
Confidence 3567889999999999 99999999999998654 7899999999999999999999999999 56665 677
Q ss_pred ccccccccCCCcccccccccccccCceeecccc
Q 012456 396 SAQIENNCNDNMEDSKDCSEKEILGFAVKDAFL 428 (463)
Q Consensus 396 ~~~~~~~~~~~~~~~e~~~~~~~~g~~v~~a~l 428 (463)
+.+.|+|.+|.++..|++.|++++||++++.++
T Consensus 130 F~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~ 162 (221)
T KOG0037|consen 130 FRTYDRDRSGTIDSSELRQALTQLGYRLSPQFY 162 (221)
T ss_pred HHhcccCCCCcccHHHHHHHHHHcCcCCCHHHH
Confidence 899999999999999999999999999887663
No 20
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=99.32 E-value=2.4e-11 Score=125.54 Aligned_cols=266 Identities=14% Similarity=0.167 Sum_probs=160.3
Q ss_pred CCCCCceEEEecccccccccCCccc------cccccCCCCcCChHhHHHHHHHHHhhCCCcEEEEeeeecC---h-----
Q 012456 41 IMGECCISCTTFNILAPIYKRLDHQ------NQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVG---N----- 106 (463)
Q Consensus 41 ~~~~~~lrV~T~NIl~~~y~~~~~~------~~~~~~~~~~~~w~~R~~~i~~~i~~~~~DIIcLQEv~~~---~----- 106 (463)
+.-.+.|||.+|||+...- ..+.. +..||...........+.++...|..+++||+.|=|++.. .
T Consensus 458 ~~v~G~LkiasfNVlNyf~-~~~~~g~~~~~~~d~rga~~~~e~~~Q~~k~v~ai~~ldaDV~GL~Eien~~~~~~s~~a 536 (798)
T COG2374 458 PDVGGSLKIASFNVLNYFN-KLSGDGGGASTFSDCRGANTTEEFARQRAKIVTAILTLDADVLGLMEIENNGYGTDSGDA 536 (798)
T ss_pred cccCceeeeeeeehhhhhc-cCCCCCCCccccccccCccchhHHHHHHHHHHHHHhhcchhhheeeeeeccCCCCCcHHH
Confidence 4455899999999976532 11111 1234555555567778889999999999999999999621 1
Q ss_pred -hhHHHHHHHHhccC-CccEEEeccC---CCCCceeEEEEeCCcceEeeeEEEEeccccCceeeeEEeeeecccccc--c
Q 012456 107 -EELVLMYQERLGNA-GYNTFSLART---NNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQN--Q 179 (463)
Q Consensus 107 -~~~~~~l~~~l~~~-gY~~~~~~~~---~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~--~ 179 (463)
..+...+.+.+..- .|.++...+. +.-..+++++||.++..++....+.-.+....++..-.-....++.+. .
T Consensus 537 i~~lV~~lna~~G~~~~y~~v~p~~~~~lgtD~I~vg~iY~~~~V~~~g~~~~~~~~a~~~v~~~~~~n~R~~laqtF~~ 616 (798)
T COG2374 537 IAQLVNALNAKAGAGTRYAFVAPGRNGGLGTDAIRVGFIYKPSAVSLVGKAAIVDNDAFLGVGEIDDNNARPPLAQTFQD 616 (798)
T ss_pred HHHHHHHHHhhcCCCceEEEEecCccCCcCCCceeEEEEeccceEEecccccccccccccccccccccccCcchhhhhhh
Confidence 12233334444433 4666665544 122457889999998888777655322111111100000000000000 0
Q ss_pred CCCCceEEEEEeecCCCCC------------CCchhhHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCccccchhhh
Q 012456 180 GGGQQEILIVNTHLLFPHD------------SSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKF 247 (463)
Q Consensus 180 ~~~~~~v~v~ntHL~~~~~------------~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~ 247 (463)
...+.+|.|+.-||++... +.....|.+|+++|..+++..... ....|+++.||||+...+.+++.
T Consensus 617 ~~~~ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~~--~~d~~~viLGD~N~y~~edpI~~ 694 (798)
T COG2374 617 LSGGEKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPTG--KADADIVILGDFNDYAFEDPIQA 694 (798)
T ss_pred ccCCcEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCccc--ccCCCEEEEeccchhhhccHHHH
Confidence 1256679999999977321 123457999999999999975432 24789999999999999999999
Q ss_pred hhcCCcccccccccccCCCCCCccccccccCcCCCccccccccccCCCCCCCCchhhhH--HHHHHHHHHHH
Q 012456 248 LRSQGFVSSYDVAHQYTDGDADAHKWVSHRNHRGNICGVDFIWLRNPNQSRKPLQASWA--EAVFSIIKCQL 317 (463)
Q Consensus 248 l~~~g~~~~~~~~~~~~~~~~~~~~w~s~~~~~~~~~~iD~i~~~~~~~~~~~~~T~~~--~~~~~~idy~~ 317 (463)
|.+.||...--..++- ..+|.- -+.++...+||++.+..........+.|+ ..-...+||-+
T Consensus 695 l~~aGy~~l~~~~~~~------~~~YSY--~f~G~~gtLDhaLas~sl~~~v~~a~ewHINAdE~~~ldYn~ 758 (798)
T COG2374 695 LEGAGYMNLAARFHDA------GDRYSY--VFNGQSGTLDHALASASLAAQVSGATEWHINADEPDALDYNL 758 (798)
T ss_pred HhhcCchhhhhhccCC------CCceEE--EECCccchHhhhhhhhhhhhhccCceeeeecccccchhhhhh
Confidence 9988976532111111 112322 23366667999998766556666666666 22233455543
No 21
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.28 E-value=7.3e-12 Score=98.65 Aligned_cols=70 Identities=23% Similarity=0.235 Sum_probs=62.9
Q ss_pred HhhhhhhHhHhhhhccc-cCCCCcccHHHHHHHHHh-cccCCCCCCCCH-HHHHHHHHhhCCCCCceeehHHHHHHHhc
Q 012456 317 LQKASLAENDAFAFFKA-DNNGDVITHSAFCEALRQ-VNLAGLPYGLSF-QETDDLWAQADVDGNGVVNYEEFKQRMWN 392 (463)
Q Consensus 317 ~~~~~~~~~~~F~~~D~-d~~~g~I~~~el~~~l~~-lg~~~~~~~~~~-~~~~~l~~~~D~d~~g~I~~~EF~~~l~~ 392 (463)
+.++...++.+|+.||+ +++ |+|+.+||+.+|+. +| ..++. +++++||+.+|.|+||.|+|+||+..|..
T Consensus 3 lE~ai~~l~~~F~~fd~~~~~-g~i~~~ELk~ll~~elg-----~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 3 LEKAIETLVSNFHKASVKGGK-ESLTASEFQELLTQQLP-----HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHHHhCCCCC-CeECHHHHHHHHHHHhh-----hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 34667889999999999 999 99999999999999 88 36887 99999999999999999999999887743
No 22
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.16 E-value=8.4e-11 Score=92.74 Aligned_cols=69 Identities=22% Similarity=0.325 Sum_probs=62.0
Q ss_pred HhhhhhhHhHhhhhcc-ccCCCC-cccHHHHHHHHHh-----cccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHH
Q 012456 317 LQKASLAENDAFAFFK-ADNNGD-VITHSAFCEALRQ-----VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQR 389 (463)
Q Consensus 317 ~~~~~~~~~~~F~~~D-~d~~~g-~I~~~el~~~l~~-----lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~ 389 (463)
+.++...++++|+.|| .|++ | .|+.+||+.+|+. +|. ..++++++++|+.+|.|++|+|+|+||+..
T Consensus 3 le~~~~~l~~aF~~fD~~dgd-G~~I~~~eL~~ll~~~~~~~lg~-----~~~~~~v~~~i~~~D~n~dG~v~f~eF~~l 76 (88)
T cd05027 3 LEKAMVALIDVFHQYSGREGD-KHKLKKSELKELINNELSHFLEE-----IKEQEVVDKVMETLDSDGDGECDFQEFMAF 76 (88)
T ss_pred HHHHHHHHHHHHHHhcccCCC-cCEECHHHHHHHHHHHhHHHhcC-----CCCHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 4567788999999998 7999 9 5999999999998 784 688999999999999999999999999877
Q ss_pred Hh
Q 012456 390 MW 391 (463)
Q Consensus 390 l~ 391 (463)
+.
T Consensus 77 i~ 78 (88)
T cd05027 77 VA 78 (88)
T ss_pred HH
Confidence 74
No 23
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.11 E-value=1.5e-10 Score=86.39 Aligned_cols=61 Identities=26% Similarity=0.504 Sum_probs=52.6
Q ss_pred HhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCH----HHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 324 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSF----QETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 324 ~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~----~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
++.+|+.+|+|++ |+|+.+||+.+++.++. ..++ +.++.+|+.+|.|+||.|+|+||+.++
T Consensus 2 l~~~F~~~D~d~~-G~i~~~el~~~~~~~~~-----~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGD-GYISKEELRRALKHLGR-----DMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSS-SEEEHHHHHHHHHHTTS-----HSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCcc-CCCCHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 6789999999999 99999999999999883 4444 455566999999999999999998764
No 24
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.09 E-value=6.4e-10 Score=105.54 Aligned_cols=196 Identities=15% Similarity=0.076 Sum_probs=108.0
Q ss_pred CCceEEEecccccccccCCccccccccCCCCcCChHhHHHHHHHHHhhCCCcEEEEeeeecChhhHHHHHHHHhccCCcc
Q 012456 44 ECCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYN 123 (463)
Q Consensus 44 ~~~lrV~T~NIl~~~y~~~~~~~~~~~~~~~~~~w~~R~~~i~~~i~~~~~DIIcLQEv~~~~~~~~~~l~~~l~~~gY~ 123 (463)
...++++++|++.+. .-...++..+...++|+|-+||.. ........ .++ ..|.
T Consensus 86 ~~~~~~l~~N~r~~n---------------------~~~~k~Lsl~~~~~~D~v~~~E~~---~~~~~~~~-~l~-~~yP 139 (309)
T COG3021 86 QRLLWNLQKNVRFDN---------------------ASVAKLLSLIQQLDADAVTTPEGV---QLWTAKVG-ALA-AQYP 139 (309)
T ss_pred chhhhhhhhhccccC---------------------cCHHHHHHHHhhhCcchhhhHHHH---HHhHhHHH-HHH-HhCC
Confidence 356899999987553 015567888888889999999983 12222222 333 2455
Q ss_pred EEEeccCCCCCceeEEEEeCCcceEeeeEEEEeccccCceeeeEEeeeecccccccCCCCceEEEEEeecC-CCCCCCch
Q 012456 124 TFSLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLL-FPHDSSLS 202 (463)
Q Consensus 124 ~~~~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~v~ntHL~-~~~~~~~~ 202 (463)
++...-.+....+++++.+..+.+....+ -++. .++.+....... ..|+.+.|++.|.. ++-. .
T Consensus 140 ~~~~~~~~~~~~~~a~~sr~~~~~~~~~e-~~~~--~pk~~~~t~~~~---------~~g~~l~v~~lh~~~~~~~--~- 204 (309)
T COG3021 140 AFILCQHPTGVFTLAILSRRPCCPLTEAE-PWLR--LPKSALATAYPL---------PDGTELTVVALHAVNFPVG--T- 204 (309)
T ss_pred ceeecCCCCCeeeeeeccccccccccccC-cccc--CCccceeEEEEc---------CCCCEEEEEeeccccccCC--c-
Confidence 44332222234556666443321111111 1111 123333222211 17899999999996 4221 1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCccccchhhhhhcCCcccccccccccCCCCCCccccccccCcCCC
Q 012456 203 VVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRNHRGN 282 (463)
Q Consensus 203 ~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~w~s~~~~~~~ 282 (463)
+....|...+.+.+..+ ..|+|++||||+.|.|.+++.+...|....+..... ....+|...... -.
T Consensus 205 ~~~~~ql~~l~~~i~~~-------~gpvIlaGDfNa~pWS~~~~R~~~l~~~~~~~~aG~-----~~~~~~p~~~~r-~~ 271 (309)
T COG3021 205 DPQRAQLLELGDQIAGH-------SGPVILAGDFNAPPWSRTAKRMAALGGLRAAPRAGL-----WEVRFTPDERRR-AF 271 (309)
T ss_pred cHHHHHHHHHHHHHHcC-------CCCeEEeecCCCcchhHHHHHHHHhcccccchhccC-----CccccCHHHHhh-cc
Confidence 22226666666666654 569999999999999999998876654444433221 111222222111 11
Q ss_pred ccccccccccC
Q 012456 283 ICGVDFIWLRN 293 (463)
Q Consensus 283 ~~~iD~i~~~~ 293 (463)
-..|||||+++
T Consensus 272 g~PIDhvf~rg 282 (309)
T COG3021 272 GLPIDHVFYRG 282 (309)
T ss_pred CCCcceeeecC
Confidence 23499999987
No 25
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.06 E-value=4.2e-10 Score=89.95 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=60.2
Q ss_pred HhhhhhhHhHhhhhcc-ccCCCC-cccHHHHHHHHHh-cccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhc
Q 012456 317 LQKASLAENDAFAFFK-ADNNGD-VITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 392 (463)
Q Consensus 317 ~~~~~~~~~~~F~~~D-~d~~~g-~I~~~el~~~l~~-lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~ 392 (463)
+.++...+.++|+.|| +|++ | +|+.+||+.+|+. ++- -.....++.+++++|+++|.|+||.|+|+||+..+..
T Consensus 5 le~a~~~~~~~F~~~dd~dgd-g~~Is~~EL~~ll~~~~~~-~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 5 LEGAMDTLIRIFHNYSGKEGD-RYKLSKGELKELLQRELTD-FLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHHHHHHccCCC-CCEECHHHHHHHHHHHhHH-hcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 4567788999999998 7898 8 5999999999976 320 0012457889999999999999999999999887743
No 26
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.04 E-value=8.2e-10 Score=95.67 Aligned_cols=66 Identities=29% Similarity=0.476 Sum_probs=62.1
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
..+.++.+|+.||.|++ |+|+..||..+|..+|. .+++++|++|++.+|.|++|.|+|+||.+.+.
T Consensus 90 ~~Eel~~aF~~fD~d~d-G~Is~~eL~~vl~~lge-----~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 90 KEEELREAFKLFDKDHD-GYISIGELRRVLKSLGE-----RLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred cHHHHHHHHHHhCCCCC-ceecHHHHHHHHHhhcc-----cCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 46789999999999999 99999999999999994 89999999999999999999999999987764
No 27
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.03 E-value=5.2e-10 Score=98.14 Aligned_cols=65 Identities=32% Similarity=0.496 Sum_probs=61.2
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
...++++|+.||+|++ |+||.+||+.+|..+|. +++.++++.|++.+|.|+||.|+|+||+..+.
T Consensus 84 ~~el~eaF~~fD~d~~-G~Is~~el~~~l~~lg~-----~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGD-GFISASELKKVLTSLGE-----KLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHHHHccCCC-CcCcHHHHHHHHHHhCC-----cCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 4589999999999999 99999999999999994 89999999999999999999999999988764
No 28
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.03 E-value=6.6e-10 Score=87.63 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=61.1
Q ss_pred HhhhhhhHhHhhhhccc-cCCCCcccHHHHHHHHHh---cccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 317 LQKASLAENDAFAFFKA-DNNGDVITHSAFCEALRQ---VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 317 ~~~~~~~~~~~F~~~D~-d~~~g~I~~~el~~~l~~---lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
+.++...+..+|+.||. |+++|+|+.+||+.+|+. +| ..+++++++++|+.+|.|++|+|+|+||+..+.
T Consensus 5 ~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg-----~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 5 LDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIG-----SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 45677889999999998 773399999999999973 56 379999999999999999999999999987773
No 29
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.99 E-value=6.6e-10 Score=97.50 Aligned_cols=99 Identities=23% Similarity=0.341 Sum_probs=84.7
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhccc-----
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLS----- 394 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~~~----- 394 (463)
....++++|+.||+|++ |+|+..||..+|+.+|. .++++++..++.++|.|++|.|+++||+..+....
T Consensus 6 ~~~el~~~F~~fD~d~~-G~i~~~el~~~lr~lg~-----~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGD-GKISVEELGAVLRSLGQ-----NPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred HHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCC-----CCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccc
Confidence 45678999999999999 99999999999999995 79999999999999999999999999988774322
Q ss_pred ----------cccccccccCCCcccccccccccccCceee
Q 012456 395 ----------CSAQIENNCNDNMEDSKDCSEKEILGFAVK 424 (463)
Q Consensus 395 ----------~~~~~~~~~~~~~~~~e~~~~~~~~g~~v~ 424 (463)
.+.-.|.+..|.+...|+..-...+|...+
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~ 119 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLT 119 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCC
Confidence 124457788888888888888888887666
No 30
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.98 E-value=1.4e-09 Score=86.87 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=61.6
Q ss_pred HhhhhhhHhHhhhhcc-ccCCCC-cccHHHHHHHHHh-cccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhc
Q 012456 317 LQKASLAENDAFAFFK-ADNNGD-VITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 392 (463)
Q Consensus 317 ~~~~~~~~~~~F~~~D-~d~~~g-~I~~~el~~~l~~-lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~ 392 (463)
+..+...++++|+.|| .|++ | .|+.+||+.+|+. +|. -.+..+++++++.+|+.+|.|++|.|+|+||+..+..
T Consensus 4 ~e~~~~~l~~~F~~fDd~dg~-G~~Is~~El~~~l~~~lg~-~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 4 LETAMETLINVFHAHSGKEGD-KYKLSKKELKDLLQTELSD-FLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHHHHHhcccCC-CCeECHHHHHHHHHHHHHH-HccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 4567788999999997 9999 9 5999999999985 652 0012468999999999999999999999999877643
No 31
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.96 E-value=1.7e-09 Score=86.79 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=60.0
Q ss_pred hhhhhHhHhhhhccc-cC-CCCcccHHHHHHHHHh-----cccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 319 KASLAENDAFAFFKA-DN-NGDVITHSAFCEALRQ-----VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 319 ~~~~~~~~~F~~~D~-d~-~~g~I~~~el~~~l~~-----lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
.....+..+|..||. |+ + |.|+..||+.+|+. +|. .+++++++.+++.+|.+++|.|+|+||+..+.
T Consensus 5 ~~~~~l~~~F~~~D~~dg~d-G~Is~~El~~~l~~~~g~~lg~-----~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDK-NTLSRKELKKLMEKELSEFLKN-----QKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHHhccCCCC-CeECHHHHHHHHHHHhHHHhhc-----cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 455678899999997 87 7 99999999999986 453 68999999999999999999999999988775
Q ss_pred cc
Q 012456 392 NL 393 (463)
Q Consensus 392 ~~ 393 (463)
..
T Consensus 79 ~~ 80 (94)
T cd05031 79 GL 80 (94)
T ss_pred HH
Confidence 43
No 32
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.94 E-value=1.2e-09 Score=94.55 Aligned_cols=120 Identities=21% Similarity=0.307 Sum_probs=97.0
Q ss_pred hhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhccc---
Q 012456 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLS--- 394 (463)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~~~--- 394 (463)
.+....+.++|.++|+|++ |.|++.||..+|+.+|. .+++.++.+|+..+|. ++|.|+|.||+..|-.+.
T Consensus 16 ~~qi~~lkeaF~l~D~d~~-G~I~~~el~~ilr~lg~-----~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~ 88 (160)
T COG5126 16 EEQIQELKEAFQLFDRDSD-GLIDRNELGKILRSLGF-----NPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG 88 (160)
T ss_pred HHHHHHHHHHHHHhCcCCC-CCCcHHHHHHHHHHcCC-----CCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC
Confidence 5677889999999999999 99999999999999995 8999999999999999 999999999998884432
Q ss_pred --------cccccccccCCCcccccccccccccCceeeccccCchhhhcCCCCCCCcCCCCCcee
Q 012456 395 --------CSAQIENNCNDNMEDSKDCSEKEILGFAVKDAFLFPSEVEKGKWPENYSLSDHAPLS 451 (463)
Q Consensus 395 --------~~~~~~~~~~~~~~~~e~~~~~~~~g~~v~~a~l~~~~~~~g~w~~~~~~s~~~~l~ 451 (463)
.+.-.|.+..|.++-+|+..-...+|-+.+.. ||++ =-.-|+.+.+|.++
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~de-----ev~~--ll~~~d~d~dG~i~ 146 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDE-----EVEK--LLKEYDEDGDGEID 146 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHH-----HHHH--HHHhcCCCCCceEe
Confidence 24556788888888888877777777665443 3444 33456667777775
No 33
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.90 E-value=3.1e-09 Score=85.66 Aligned_cols=66 Identities=18% Similarity=0.296 Sum_probs=59.7
Q ss_pred hhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhc
Q 012456 319 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 392 (463)
Q Consensus 319 ~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~ 392 (463)
.....+..+|..+|.|++ |.|+.+||+.+|+.+| +++++++.++..+|.+++|.|+|+||+.++..
T Consensus 7 ~~~~~l~~~F~~~D~d~~-G~Is~~el~~~l~~~~-------~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQD-GTVTGAQAKPILLKSG-------LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHHHhCCCCC-CeEeHHHHHHHHHHcC-------CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 455678899999999999 9999999999999965 78899999999999999999999999887753
No 34
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.88 E-value=4.2e-09 Score=78.60 Aligned_cols=59 Identities=24% Similarity=0.383 Sum_probs=54.5
Q ss_pred hHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 325 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 325 ~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
+.+|..+|+|++ |.|+.+||+.+|+.+| ++.++++.++..+|.+++|.|+|+||+..+.
T Consensus 2 ~~~F~~~D~~~~-G~i~~~el~~~l~~~g-------~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGD-GLISGDEARPFLGKSG-------LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCC-CcCcHHHHHHHHHHcC-------CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 568999999999 9999999999999977 5889999999999999999999999987764
No 35
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.84 E-value=9.4e-09 Score=81.19 Aligned_cols=76 Identities=11% Similarity=0.114 Sum_probs=60.1
Q ss_pred HhhhhhhHhHhhhh-ccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhc
Q 012456 317 LQKASLAENDAFAF-FKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 392 (463)
Q Consensus 317 ~~~~~~~~~~~F~~-~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~ 392 (463)
+.++...+..+|+. +|+|++++.|+.+||+.+|....-.-.....++.+++.+|+.+|.|+||.|+|+||+..+..
T Consensus 4 le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 4 TERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 35667788999999 78888734999999999998741000012466899999999999999999999999987743
No 36
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.83 E-value=8.3e-09 Score=73.61 Aligned_cols=49 Identities=35% Similarity=0.579 Sum_probs=46.2
Q ss_pred CcccHHHHHHHHHhcccCCCCCC-CCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 338 DVITHSAFCEALRQVNLAGLPYG-LSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 338 g~I~~~el~~~l~~lg~~~~~~~-~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
|.|+.+||+.+|..+|+ . +++++++.++..+|.|++|.|+|+||+..+.
T Consensus 3 G~i~~~~~~~~l~~~g~-----~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 3 GKITREEFRRALSKLGI-----KDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SEEEHHHHHHHHHHTTS-----SSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCC-----CCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 99999999999988896 7 9999999999999999999999999988764
No 37
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.79 E-value=1.3e-08 Score=80.63 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=59.4
Q ss_pred hhhhhHhHhhhhccc--cCCCCcccHHHHHHHHHh-cccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 319 KASLAENDAFAFFKA--DNNGDVITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 319 ~~~~~~~~~F~~~D~--d~~~g~I~~~el~~~l~~-lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
+....++.+|..||+ |++ |.|+.+||+.+++. +|. ..+...+.++++.+|..+|.+++|.|+|+||+..+.
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~-G~Is~~el~~~l~~~~g~-~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDK-DTLSKKELKELLETELPN-FLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHHHhhccCCC-CcCcHHHHHHHHHHHhhh-hccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 456678899999999 899 99999999999986 552 011235699999999999999999999999988774
No 38
>PTZ00183 centrin; Provisional
Probab=98.71 E-value=1.8e-08 Score=88.67 Aligned_cols=119 Identities=18% Similarity=0.277 Sum_probs=88.0
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhc-------
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN------- 392 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~------- 392 (463)
....+..+|..+|.+++ |.|+..||..+|+.+|. .++.++++.++..+|.+++|.|+|+||+..+..
T Consensus 15 ~~~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~g~-----~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 88 (158)
T PTZ00183 15 QKKEIREAFDLFDTDGS-GTIDPKELKVAMRSLGF-----EPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP 88 (158)
T ss_pred HHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHhCC-----CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc
Confidence 44568899999999999 99999999999999885 688899999999999999999999999876632
Q ss_pred ----cccccccccccCCCcccccccccccccCceeeccccCchhhhcCCCCCCCcCCCCCcee
Q 012456 393 ----LSCSAQIENNCNDNMEDSKDCSEKEILGFAVKDAFLFPSEVEKGKWPENYSLSDHAPLS 451 (463)
Q Consensus 393 ----~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~v~~a~l~~~~~~~g~w~~~~~~s~~~~l~ 451 (463)
...+...+.+..|.++-.|........|.. +-+.+++. +-..++.+++|.|+
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~-----l~~~~~~~--~~~~~d~~~~g~i~ 144 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGET-----ITDEELQE--MIDEADRNGDGEIS 144 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC-----CCHHHHHH--HHHHhCCCCCCcCc
Confidence 122344556666666655555555555533 23444554 44566667777654
No 39
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.69 E-value=2.5e-07 Score=90.78 Aligned_cols=134 Identities=19% Similarity=0.193 Sum_probs=73.4
Q ss_pred CCCcE--EEEeee-ec--------C---hhhHHHHHHHHhcc-CCccEEEeccCCCCCceeEEEEeCCcceEe---eeEE
Q 012456 92 ERSSV--ICLQEF-WV--------G---NEELVLMYQERLGN-AGYNTFSLARTNNRGDGLLTALHRDYFNVL---NYRE 153 (463)
Q Consensus 92 ~~~DI--IcLQEv-~~--------~---~~~~~~~l~~~l~~-~gY~~~~~~~~~~~~~G~ai~~r~sr~~i~---~~~~ 153 (463)
..||| |+|||+ +. . ...+...+...|.. ..|..+... .-.+-++.+|++.+-.+-+ ....
T Consensus 37 ~~pDI~viglQEi~~~~~~~~~~~~~~~~~~W~~~i~~~l~~~~~Y~~v~~~--~l~gi~l~vf~~~~~~~~i~~v~~~~ 114 (310)
T smart00128 37 EKPDIYVIGLQEVVDLENGVLLETIAGKERLWSKLIESSLNGDGQYNVLAKV--RLVGILVLVFVKANHLVYIKDVETFT 114 (310)
T ss_pred CCCCEEEEEeeeecccchhhhhhccchhHHHHHHHHHHhcCCCCceEEEeee--eecceEEEEEEehhhcCccceeEeee
Confidence 67999 779998 20 0 11222333334432 345555433 2334577888876543222 2222
Q ss_pred EEecc---ccCceeeeEEeeeecccccccCCCCceEEEEEeecCCCCCCCchhhHHHHHHHHHHHHHHHHhhc--CCCCC
Q 012456 154 LLFND---FGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTEN--KLNHI 228 (463)
Q Consensus 154 ~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~--~~~~~ 228 (463)
+...- .+.+.+..+.+.. .+..+.++|+||.++. .....|..+...|++.+.--.... .....
T Consensus 115 v~~G~~~~~~nKG~v~i~~~~----------~~~~~~fv~~HL~a~~--~~~~~R~~~~~~I~~~~~f~~~~~~~~~~~d 182 (310)
T smart00128 115 VKTGMGGLWGNKGAVAVRFKL----------SDTSFCFVNSHLAAGA--SNVEQRNQDYKTILRALSFPERAELSQFDHD 182 (310)
T ss_pred eeccccceeecCceEEEEEEE----------cCcEEEEEeecccccc--chhhhhHHHHHHHHHhcCCCCCccccccccc
Confidence 22211 1244445555544 6679999999997744 234568888888865552111000 01246
Q ss_pred cEEEeecCCCc
Q 012456 229 PIILCGDWNGS 239 (463)
Q Consensus 229 pvIl~GDFN~~ 239 (463)
.+|++||||-.
T Consensus 183 ~~f~~GDlNyR 193 (310)
T smart00128 183 VVFWFGDLNFR 193 (310)
T ss_pred eEEEecCccee
Confidence 79999999964
No 40
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=9.6e-08 Score=81.13 Aligned_cols=86 Identities=22% Similarity=0.281 Sum_probs=70.5
Q ss_pred CCCchhhhHHHHHHHHHHHHhhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCC
Q 012456 298 RKPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG 377 (463)
Q Consensus 298 ~~~~~T~~~~~~~~~idy~~~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~ 377 (463)
....|..+.+.+...+- ......++..+|+.+|-|++ |.|+..+|+.+.+.|| ..++++|+++||.++|.|+
T Consensus 84 g~i~fe~f~~~mt~k~~--e~dt~eEi~~afrl~D~D~~-Gkis~~~lkrvakeLg-----enltD~El~eMIeEAd~d~ 155 (172)
T KOG0028|consen 84 GKITFEDFRRVMTVKLG--ERDTKEEIKKAFRLFDDDKT-GKISQRNLKRVAKELG-----ENLTDEELMEMIEEADRDG 155 (172)
T ss_pred ceechHHHHHHHHHHHh--ccCcHHHHHHHHHcccccCC-CCcCHHHHHHHHHHhC-----ccccHHHHHHHHHHhcccc
Confidence 34455555444332221 24467889999999999999 9999999999999999 4899999999999999999
Q ss_pred CceeehHHHHHHHh
Q 012456 378 NGVVNYEEFKQRMW 391 (463)
Q Consensus 378 ~g~I~~~EF~~~l~ 391 (463)
||-|+-+||..+|.
T Consensus 156 dgevneeEF~~imk 169 (172)
T KOG0028|consen 156 DGEVNEEEFIRIMK 169 (172)
T ss_pred cccccHHHHHHHHh
Confidence 99999999987763
No 41
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.66 E-value=9.3e-08 Score=69.30 Aligned_cols=61 Identities=33% Similarity=0.599 Sum_probs=56.2
Q ss_pred HhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 324 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 324 ~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
+..+|..+|.+++ |.|+.+|+..+++.++. ..+.+++..++..+|.+++|.|+|+||+..+
T Consensus 2 ~~~~f~~~d~~~~-g~l~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGD-GTISADELKAALKSLGE-----GLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCC-CcCcHHHHHHHHHHhCC-----CCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999 99999999999999985 7899999999999999999999999997654
No 42
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=3.4e-08 Score=83.81 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=77.5
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhcccc----
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLSC---- 395 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~~~~---- 395 (463)
....+..+|..||.+++ |+|+.+||+-+++.+|+ .+..+||.+|+...|.++.|.|+|++|+..+..+..
T Consensus 31 q~q~i~e~f~lfd~~~~-g~iD~~EL~vAmralGF-----E~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt 104 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMA-GKIDVEELKVAMRALGF-----EPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDT 104 (172)
T ss_pred HHhhHHHHHHhhccCCC-CcccHHHHHHHHHHcCC-----CcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCc
Confidence 44678899999999999 99999999999999997 789999999999999999999999999887644222
Q ss_pred -------ccccccccCCCcccccccccccccCceeeccc
Q 012456 396 -------SAQIENNCNDNMEDSKDCSEKEILGFAVKDAF 427 (463)
Q Consensus 396 -------~~~~~~~~~~~~~~~e~~~~~~~~g~~v~~a~ 427 (463)
+...|.+..|.+.-.+++.-...+|=+++.+-
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~E 143 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEE 143 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHH
Confidence 34455666666654444333333443333333
No 43
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.62 E-value=8.3e-08 Score=75.83 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=59.1
Q ss_pred HhhhhhhHhHhhhhcccc--CCCCcccHHHHHHHHH-hcccCCCCCCCC----HHHHHHHHHhhCCCCCceeehHHHHHH
Q 012456 317 LQKASLAENDAFAFFKAD--NNGDVITHSAFCEALR-QVNLAGLPYGLS----FQETDDLWAQADVDGNGVVNYEEFKQR 389 (463)
Q Consensus 317 ~~~~~~~~~~~F~~~D~d--~~~g~I~~~el~~~l~-~lg~~~~~~~~~----~~~~~~l~~~~D~d~~g~I~~~EF~~~ 389 (463)
+.++...+...|+.++.. .+ |.|+.+||+.+|. .+| ..++ +++++.+|..+|.|++|.|+|+||+..
T Consensus 3 ~e~~i~~~~~~f~~y~~~~~~~-~~Is~~El~~ll~~~~g-----~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~ 76 (88)
T cd05030 3 LEKAIETIINVFHQYSVRKGHP-DTLYKKEFKQLVEKELP-----NFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVL 76 (88)
T ss_pred HHHHHHHHHHHHHHHhccCCCc-ccCCHHHHHHHHHHHhh-----HhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHH
Confidence 456778889999999865 35 9999999999997 555 2455 899999999999999999999999987
Q ss_pred Hhc
Q 012456 390 MWN 392 (463)
Q Consensus 390 l~~ 392 (463)
+..
T Consensus 77 ~~~ 79 (88)
T cd05030 77 VIK 79 (88)
T ss_pred HHH
Confidence 743
No 44
>PTZ00184 calmodulin; Provisional
Probab=98.62 E-value=4.1e-08 Score=85.37 Aligned_cols=121 Identities=18% Similarity=0.279 Sum_probs=88.3
Q ss_pred hhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhc-----
Q 012456 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN----- 392 (463)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~----- 392 (463)
.+....+...|..+|.+++ |.|+.+||..++..+|. .++.++++.++..+|.+++|.|+|+||+..+..
T Consensus 7 ~~~~~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 80 (149)
T PTZ00184 7 EEQIAEFKEAFSLFDKDGD-GTITTKELGTVMRSLGQ-----NPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT 80 (149)
T ss_pred HHHHHHHHHHHHHHcCCCC-CcCCHHHHHHHHHHhCC-----CCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC
Confidence 3455678899999999999 99999999999999885 678899999999999999999999999887642
Q ss_pred ------cccccccccccCCCcccccccccccccCceeeccccCchhhhcCCCCCCCcCCCCCcee
Q 012456 393 ------LSCSAQIENNCNDNMEDSKDCSEKEILGFAVKDAFLFPSEVEKGKWPENYSLSDHAPLS 451 (463)
Q Consensus 393 ------~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~v~~a~l~~~~~~~g~w~~~~~~s~~~~l~ 451 (463)
...+...|.+..|.++..+.......+|+.++.+. ++. +-..++.+.+|.++
T Consensus 81 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~-----~~~--~~~~~d~~~~g~i~ 138 (149)
T PTZ00184 81 DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEE-----VDE--MIREADVDGDGQIN 138 (149)
T ss_pred cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHH-----HHH--HHHhcCCCCCCcCc
Confidence 12234456666677766666555555565443322 222 23345556667655
No 45
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.51 E-value=5.4e-07 Score=76.06 Aligned_cols=87 Identities=15% Similarity=0.198 Sum_probs=72.8
Q ss_pred CCCCchhhhHHHHHHHHHHHHhhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCC
Q 012456 297 SRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD 376 (463)
Q Consensus 297 ~~~~~~T~~~~~~~~~idy~~~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d 376 (463)
.+...||-+...+...+.- ......+..+|+.||.+++ |.|..+.|+++|...| ..++++||+.|++.+-.|
T Consensus 78 ~gPINft~FLTmfGekL~g--tdpe~~I~~AF~~FD~~~~-G~I~~d~lre~Ltt~g-----Dr~~~eEV~~m~r~~p~d 149 (171)
T KOG0031|consen 78 PGPINFTVFLTMFGEKLNG--TDPEEVILNAFKTFDDEGS-GKIDEDYLRELLTTMG-----DRFTDEEVDEMYREAPID 149 (171)
T ss_pred CCCeeHHHHHHHHHHHhcC--CCHHHHHHHHHHhcCccCC-CccCHHHHHHHHHHhc-----ccCCHHHHHHHHHhCCcc
Confidence 3455677655555444432 2457889999999999999 9999999999999998 599999999999999999
Q ss_pred CCceeehHHHHHHHh
Q 012456 377 GNGVVNYEEFKQRMW 391 (463)
Q Consensus 377 ~~g~I~~~EF~~~l~ 391 (463)
..|.|+|.+|+..|.
T Consensus 150 ~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 150 KKGNFDYKAFTYIIT 164 (171)
T ss_pred cCCceeHHHHHHHHH
Confidence 999999999987775
No 46
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.50 E-value=2.8e-07 Score=76.29 Aligned_cols=62 Identities=10% Similarity=0.187 Sum_probs=54.5
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
....+.-+|..+|.|+| |.|+.+||..++ ++ ..+..++.+|..+|.|+||.|+++||...+.
T Consensus 46 ~~~~l~w~F~~lD~d~D-G~Ls~~EL~~~~--l~-------~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYD-GKLSHHELAPIR--LD-------PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCC-CcCCHHHHHHHH--cc-------chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 44667889999999999 999999999876 33 5688899999999999999999999988774
No 47
>PTZ00184 calmodulin; Provisional
Probab=98.50 E-value=5e-07 Score=78.44 Aligned_cols=86 Identities=26% Similarity=0.384 Sum_probs=67.8
Q ss_pred CCCchhhhHHHHHHHHHHHHhhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCC
Q 012456 298 RKPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG 377 (463)
Q Consensus 298 ~~~~~T~~~~~~~~~idy~~~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~ 377 (463)
+...+..|...+...+.. ......+..+|+.+|.+++ |.|+..||+.++..+|. .++.++++.++..+|.++
T Consensus 62 g~i~~~ef~~~l~~~~~~--~~~~~~~~~~F~~~D~~~~-g~i~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~d~~~ 133 (149)
T PTZ00184 62 GTIDFPEFLTLMARKMKD--TDSEEEIKEAFKVFDRDGN-GFISAAELRHVMTNLGE-----KLTDEEVDEMIREADVDG 133 (149)
T ss_pred CcCcHHHHHHHHHHhccC--CcHHHHHHHHHHhhCCCCC-CeEeHHHHHHHHHHHCC-----CCCHHHHHHHHHhcCCCC
Confidence 345555555444432221 1223457899999999999 99999999999999885 789999999999999999
Q ss_pred CceeehHHHHHHHh
Q 012456 378 NGVVNYEEFKQRMW 391 (463)
Q Consensus 378 ~g~I~~~EF~~~l~ 391 (463)
+|.|+|+||+..+.
T Consensus 134 ~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 134 DGQINYEEFVKMMM 147 (149)
T ss_pred CCcCcHHHHHHHHh
Confidence 99999999987763
No 48
>PTZ00183 centrin; Provisional
Probab=98.47 E-value=6.5e-07 Score=78.73 Aligned_cols=64 Identities=22% Similarity=0.329 Sum_probs=59.4
Q ss_pred hhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 322 ~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
..+..+|+.+|.+++ |.|+..||..++..+|. .++.++++.++..+|.|++|.|+|+||+..+.
T Consensus 90 ~~l~~~F~~~D~~~~-G~i~~~e~~~~l~~~~~-----~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 90 EEILKAFRLFDDDKT-GKISLKNLKRVAKELGE-----TITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHHhCCCCC-CcCcHHHHHHHHHHhCC-----CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 467899999999999 99999999999999885 79999999999999999999999999987774
No 49
>PF14658 EF-hand_9: EF-hand domain
Probab=98.47 E-value=5.4e-07 Score=65.68 Aligned_cols=61 Identities=28% Similarity=0.362 Sum_probs=56.0
Q ss_pred HhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCC-ceeehHHHHHHHh
Q 012456 326 DAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGN-GVVNYEEFKQRMW 391 (463)
Q Consensus 326 ~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~-g~I~~~EF~~~l~ 391 (463)
.+|..||.++. |.|..++|...|+.++- ..+++++++.+.+++|.++. |.|+++.|+..|.
T Consensus 2 ~~F~~fD~~~t-G~V~v~~l~~~Lra~~~----~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKT-GRVPVSDLITYLRAVTG----RSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCC-ceEeHHHHHHHHHHHcC----CCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 47999999999 99999999999999983 26889999999999999998 9999999998874
No 50
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.44 E-value=4.5e-07 Score=81.27 Aligned_cols=81 Identities=20% Similarity=0.203 Sum_probs=67.6
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhc----cccc
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN----LSCS 396 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~----~~~~ 396 (463)
...-+.+|+.+|+|++ |.|+.+||+.||.++|. .++++-.+.+++.+|.-++|.|+|++|++.+.. ...+
T Consensus 123 i~~Wr~vF~~~D~D~S-G~I~~sEL~~Al~~~Gy-----~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~F 196 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRS-GTIDSSELRQALTQLGY-----RLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAF 196 (221)
T ss_pred HHHHHHHHHhcccCCC-CcccHHHHHHHHHHcCc-----CCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHH
Confidence 3557889999999999 99999999999999996 899999999999999988999999999987733 2334
Q ss_pred cccccccCCCc
Q 012456 397 AQIENNCNDNM 407 (463)
Q Consensus 397 ~~~~~~~~~~~ 407 (463)
.+.|.+..|.+
T Consensus 197 r~~D~~q~G~i 207 (221)
T KOG0037|consen 197 RRRDTAQQGSI 207 (221)
T ss_pred HHhccccceeE
Confidence 55555555544
No 51
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.44 E-value=7.3e-07 Score=74.01 Aligned_cols=86 Identities=20% Similarity=0.275 Sum_probs=65.7
Q ss_pred CCchhhhHHHHHHHHHHHHhhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCC
Q 012456 299 KPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGN 378 (463)
Q Consensus 299 ~~~~T~~~~~~~~~idy~~~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~ 378 (463)
...|..|...+..+.+..-+-.-++..+-++.||++++ |.|...||+.+|..+| ..++++|++.++.-.. |.+
T Consensus 65 rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~-G~i~~aeLRhvLttlG-----ekl~eeEVe~Llag~e-D~n 137 (152)
T KOG0030|consen 65 RLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGN-GTIMGAELRHVLTTLG-----EKLTEEEVEELLAGQE-DSN 137 (152)
T ss_pred hhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCC-cceeHHHHHHHHHHHH-----hhccHHHHHHHHcccc-ccC
Confidence 34455544444444433222234567788899999999 9999999999999999 4899999999987653 668
Q ss_pred ceeehHHHHHHHh
Q 012456 379 GVVNYEEFKQRMW 391 (463)
Q Consensus 379 g~I~~~EF~~~l~ 391 (463)
|.|+|+.|++.++
T Consensus 138 G~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 138 GCINYEAFVKHIM 150 (152)
T ss_pred CcCcHHHHHHHHh
Confidence 9999999998775
No 52
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.40 E-value=5.2e-07 Score=76.12 Aligned_cols=116 Identities=12% Similarity=0.158 Sum_probs=89.5
Q ss_pred hhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhcccc--
Q 012456 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLSC-- 395 (463)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~~~~-- 395 (463)
++++.+..++|.++|+|+| |.|++++|+..|..+| ...++++++.||++ +.|.|+|.-|+.++-.+.+
T Consensus 28 q~QIqEfKEAF~~mDqnrD-G~IdkeDL~d~~aSlG-----k~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gt 97 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRD-GFIDKEDLRDMLASLG-----KIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGT 97 (171)
T ss_pred HHHHHHHHHHHHHHhccCC-CcccHHHHHHHHHHcC-----CCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCC
Confidence 6788999999999999999 9999999999999999 47999999999998 4689999999988855332
Q ss_pred ---------ccccccccCCCcccccccccccccCceeeccccCchhhhcCCCCCCCcCCCCCce
Q 012456 396 ---------SAQIENNCNDNMEDSKDCSEKEILGFAVKDAFLFPSEVEKGKWPENYSLSDHAPL 450 (463)
Q Consensus 396 ---------~~~~~~~~~~~~~~~e~~~~~~~~g~~v~~a~l~~~~~~~g~w~~~~~~s~~~~l 450 (463)
+.-.|.+..|.+++..+.......|=+ +-|.||++ -=..+....||.+
T Consensus 98 dpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr-----~~~eEV~~--m~r~~p~d~~G~~ 154 (171)
T KOG0031|consen 98 DPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDR-----FTDEEVDE--MYREAPIDKKGNF 154 (171)
T ss_pred CHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhccc-----CCHHHHHH--HHHhCCcccCCce
Confidence 455677778888887777766666643 34566665 2233444455544
No 53
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.40 E-value=1.2e-06 Score=68.65 Aligned_cols=71 Identities=13% Similarity=0.168 Sum_probs=56.1
Q ss_pred HhhhhhhHhHhhhhccccCCCCcccHHHHHHHHHh-cc-cCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 317 LQKASLAENDAFAFFKADNNGDVITHSAFCEALRQ-VN-LAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 317 ~~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~-lg-~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
+.++...+..+|+.+-.+ .+.+++.||+.+|.. ++ + ....-.++.|+++|+.+|.|+||.|||+||+..+.
T Consensus 3 LE~ai~~lI~~FhkYaG~--~~tLsk~Elk~Ll~~Elp~~--l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 3 LEHSMEKMMLTFHKFAGE--KNYLNRDDLQKLMEKEFSEF--LKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHHHHHHcCC--CCcCCHHHHHHHHHHHhHHH--HcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 346677888999999733 379999999999974 32 1 01234688899999999999999999999988774
No 54
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.34 E-value=1.7e-06 Score=76.09 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=59.9
Q ss_pred hhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
++.+.....+|+.+|.|.| |+|+..||+..|.+||. +-|.=-++.||++.|.|.||+|+|.||+-++
T Consensus 95 rkqIk~~~~~Fk~yDe~rD-gfIdl~ELK~mmEKLga-----pQTHL~lK~mikeVded~dgklSfreflLIf 161 (244)
T KOG0041|consen 95 RKQIKDAESMFKQYDEDRD-GFIDLMELKRMMEKLGA-----PQTHLGLKNMIKEVDEDFDGKLSFREFLLIF 161 (244)
T ss_pred HHHHHHHHHHHHHhccccc-ccccHHHHHHHHHHhCC-----chhhHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 3455668899999999999 99999999999999995 7888889999999999999999999996444
No 55
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.33 E-value=7.3e-07 Score=86.75 Aligned_cols=102 Identities=17% Similarity=0.294 Sum_probs=86.5
Q ss_pred hhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhcccc---
Q 012456 319 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLSC--- 395 (463)
Q Consensus 319 ~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~~~~--- 395 (463)
+....++.+|..||.+++ |.|+..+|.++|..+.. + ....+-...++..+|.|.||.+||+||.+++...+.
T Consensus 11 er~~r~~~lf~~lD~~~~-g~~d~~~l~k~~~~l~~---~-~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~ 85 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKND-GQVDLDQLEKGLEKLDH---P-KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELY 85 (463)
T ss_pred HHHHHHHHHHHHhccCCC-CceeHHHHHHHHHhcCC---C-CCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHH
Confidence 345678899999999999 99999999999999884 2 477888899999999999999999999998865433
Q ss_pred --ccccccccCCCcccccccccccccCceeec
Q 012456 396 --SAQIENNCNDNMEDSKDCSEKEILGFAVKD 425 (463)
Q Consensus 396 --~~~~~~~~~~~~~~~e~~~~~~~~g~~v~~ 425 (463)
|...|.+.+|.++-.|.......+|-.++.
T Consensus 86 ~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~d 117 (463)
T KOG0036|consen 86 RIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSD 117 (463)
T ss_pred HHHhhhccccCCccCHHHHHHHHHHhCCccCH
Confidence 577788889999888888888888876654
No 56
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.29 E-value=1.5e-06 Score=78.01 Aligned_cols=69 Identities=25% Similarity=0.385 Sum_probs=54.5
Q ss_pred hhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHH----HHHHHHhhCCCCCceeehHHHHHHHhcc
Q 012456 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQE----TDDLWAQADVDGNGVVNYEEFKQRMWNL 393 (463)
Q Consensus 322 ~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~----~~~l~~~~D~d~~g~I~~~EF~~~l~~~ 393 (463)
..+.=+|+.+|.+++ |+|+.+||..++..+- +.....+++. ++.+|.++|.|+||+|+|+||.+.++..
T Consensus 104 ~Kl~faF~vYD~~~~-G~I~reel~~iv~~~~--~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGD-GFISREELKQILRMMV--GENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCC-CcCcHHHHHHHHHHHH--ccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 456779999999999 9999999999999863 1111112443 5678899999999999999999888753
No 57
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.13 E-value=1.2e-05 Score=78.66 Aligned_cols=74 Identities=20% Similarity=0.283 Sum_probs=63.7
Q ss_pred HHhhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 316 QLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 316 ~~~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
-+++....+..+|+.+|+|++ |.||.+||+.+..-++- .-...+++.++-++-+.+|.|+||.||++||+..+.
T Consensus 541 tLYr~ks~LetiF~~iD~D~S-G~isldEF~~a~~l~~s-h~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNS-GEISLDEFRTAWKLLSS-HMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHhchhhHHHHHHHhccCCC-CceeHHHHHHHHHHHHh-hcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 345667778899999999999 99999999999887652 223479999999999999999999999999998874
No 58
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.12 E-value=3.6e-06 Score=51.40 Aligned_cols=27 Identities=37% Similarity=0.700 Sum_probs=24.7
Q ss_pred HHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 365 ETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 365 ~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
|++++|+.+|+|+||.|+++||+..|.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 688999999999999999999987764
No 59
>PLN02964 phosphatidylserine decarboxylase
Probab=97.97 E-value=1.2e-05 Score=85.00 Aligned_cols=63 Identities=19% Similarity=0.385 Sum_probs=53.1
Q ss_pred HhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhc
Q 012456 324 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 392 (463)
Q Consensus 324 ~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~ 392 (463)
+.++|+.+|.|++ |.|+.+||..+|..++- ..++++++++|+.+|.|++|.|+++||...+..
T Consensus 181 i~~mf~~~D~Dgd-G~IdfdEFl~lL~~lg~-----~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDED-GQLSFSEFSDLIKAFGN-----LVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCC-CeEcHHHHHHHHHHhcc-----CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 6788888898888 99999999999988773 578888999999999999999999999777644
No 60
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.93 E-value=8.3e-06 Score=67.82 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=74.2
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCC--CCceeehHHHHHHHhc--cc-
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD--GNGVVNYEEFKQRMWN--LS- 394 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d--~~g~I~~~EF~~~l~~--~~- 394 (463)
...+++++|..||..+| |+|+.+..-.+||.+|. ++|+.+|.+.+.+++.+ +--+|+|++|+.++.. +.
T Consensus 9 ~~~e~ke~F~lfD~~gD-~ki~~~q~gdvlRalG~-----nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGD-GKISGSQVGDVLRALGQ-----NPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred hHHHHHHHHHHHhccCc-ccccHHHHHHHHHHhcC-----CCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 34678999999999999 99999999999999996 89999999999999988 5578999999876632 11
Q ss_pred ----------cccccccccCCCcccccccccccccCc
Q 012456 395 ----------CSAQIENNCNDNMEDSKDCSEKEILGF 421 (463)
Q Consensus 395 ----------~~~~~~~~~~~~~~~~e~~~~~~~~g~ 421 (463)
....+|++.+|.+...|+.--..++|=
T Consensus 83 ~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGe 119 (152)
T KOG0030|consen 83 DQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGE 119 (152)
T ss_pred ccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHh
Confidence 113456667777766555444444443
No 61
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.90 E-value=1e-05 Score=49.40 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=26.3
Q ss_pred hHhHhhhhccccCCCCcccHHHHHHHHHhc
Q 012456 323 AENDAFAFFKADNNGDVITHSAFCEALRQV 352 (463)
Q Consensus 323 ~~~~~F~~~D~d~~~g~I~~~el~~~l~~l 352 (463)
++..+|+.+|+|+| |+|+.+||+.+|+.|
T Consensus 1 E~~~~F~~~D~d~d-G~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGD-GKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSS-SEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCC-CcCCHHHHHHHHHhC
Confidence 36789999999999 999999999999874
No 62
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=97.86 E-value=4.7e-05 Score=74.40 Aligned_cols=66 Identities=17% Similarity=0.364 Sum_probs=62.1
Q ss_pred hhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 319 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 319 ~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
..+..+...|+.+|.++| |+|+.+|+...|+.+|+ +++++++++++..+|.++++.|+++||...+
T Consensus 79 ~~E~~l~~~F~~iD~~hd-G~i~~~Ei~~~l~~~gi-----~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ 144 (463)
T KOG0036|consen 79 NKELELYRIFQSIDLEHD-GKIDPNEIWRYLKDLGI-----QLSDEKAAKFFEHMDKDGKATIDLEEWRDHL 144 (463)
T ss_pred HhHHHHHHHHhhhccccC-CccCHHHHHHHHHHhCC-----ccCHHHHHHHHHHhccCCCeeeccHHHHhhh
Confidence 567888999999999999 99999999999999997 8999999999999999999999999997655
No 63
>PLN02964 phosphatidylserine decarboxylase
Probab=97.78 E-value=4.2e-05 Score=81.05 Aligned_cols=90 Identities=10% Similarity=0.171 Sum_probs=71.3
Q ss_pred HHhhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHH---HHHHHHhhCCCCCceeehHHHHHHH--
Q 012456 316 QLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQE---TDDLWAQADVDGNGVVNYEEFKQRM-- 390 (463)
Q Consensus 316 ~~~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~---~~~l~~~~D~d~~g~I~~~EF~~~l-- 390 (463)
+..+...++.++|..+|+|++ |.| |..+++.+|+ ..+++++ ++++|..+|.|++|.|+|+||+..|
T Consensus 137 f~~kqi~elkeaF~lfD~dgd-G~i----Lg~ilrslG~----~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~ 207 (644)
T PLN02964 137 FVTQEPESACESFDLLDPSSS-NKV----VGSIFVSCSI----EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA 207 (644)
T ss_pred ccHHHHHHHHHHHHHHCCCCC-CcC----HHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence 345566888999999999999 997 9999999993 2677777 8999999999999999999998755
Q ss_pred hc--------cccccccccccCCCcccccccc
Q 012456 391 WN--------LSCSAQIENNCNDNMEDSKDCS 414 (463)
Q Consensus 391 ~~--------~~~~~~~~~~~~~~~~~~e~~~ 414 (463)
.. ...+...|.+..|.+.-+|+..
T Consensus 208 lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~ 239 (644)
T PLN02964 208 FGNLVAANKKEELFKAADLNGDGVVTIDELAA 239 (644)
T ss_pred hccCCCHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence 22 2334556777778777666644
No 64
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.75 E-value=9.7e-05 Score=59.94 Aligned_cols=63 Identities=21% Similarity=0.367 Sum_probs=54.3
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
.......+|..+|. ++ |.|+-++.+.+|.+.| ++.+.+..+|...|.|++|.++++||+-.|+
T Consensus 8 e~~~y~~~F~~l~~-~~-g~isg~~a~~~f~~S~-------L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QD-GKISGDQAREFFMKSG-------LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHHCTSS-ST-TEEEHHHHHHHHHHTT-------SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CC-CeEeHHHHHHHHHHcC-------CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 34556789999885 57 9999999999999865 8899999999999999999999999987774
No 65
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.72 E-value=2.9e-05 Score=48.26 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=25.8
Q ss_pred HhHhhhhccccCCCCcccHHHHHHHHH-hcc
Q 012456 324 ENDAFAFFKADNNGDVITHSAFCEALR-QVN 353 (463)
Q Consensus 324 ~~~~F~~~D~d~~~g~I~~~el~~~l~-~lg 353 (463)
++.+|+.+|+|++ |+|+.+||+.+|+ .+|
T Consensus 2 l~~~F~~~D~d~d-G~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGD-GFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSS-SEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCC-CcCcHHHHHHHHHHhcC
Confidence 6789999999999 9999999999999 575
No 66
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.69 E-value=0.00011 Score=66.17 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=61.6
Q ss_pred CCCCchhhhHHHHHHHHHHHHhhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhccc-CCC---C-CCC-CHHHHHHHH
Q 012456 297 SRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNL-AGL---P-YGL-SFQETDDLW 370 (463)
Q Consensus 297 ~~~~~~T~~~~~~~~~idy~~~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~-~~~---~-~~~-~~~~~~~l~ 370 (463)
.+...+-.|..++.-+.. ......+.=+|+++|.|++ |+|++.|+-.+++.+-. .+. + ... .++-++.+|
T Consensus 78 dg~i~F~Efi~als~~~r---Gt~eekl~w~F~lyD~dgd-G~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if 153 (193)
T KOG0044|consen 78 DGTIDFLEFICALSLTSR---GTLEEKLKWAFRLYDLDGD-GYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIF 153 (193)
T ss_pred CCCcCHHHHHHHHHHHcC---CcHHHHhhhhheeecCCCC-ceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHH
Confidence 344444444444433332 2333445567999999999 99999999888876421 122 1 112 355678899
Q ss_pred HhhCCCCCceeehHHHHHHHh
Q 012456 371 AQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 371 ~~~D~d~~g~I~~~EF~~~l~ 391 (463)
+.+|.|+||.|+++||.....
T Consensus 154 ~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 154 SKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HHcCCCCCCcccHHHHHHHhh
Confidence 999999999999999987663
No 67
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.64 E-value=0.00014 Score=65.55 Aligned_cols=76 Identities=21% Similarity=0.221 Sum_probs=59.7
Q ss_pred HHHHHHHHH--hhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHH
Q 012456 309 VFSIIKCQL--QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEF 386 (463)
Q Consensus 309 ~~~~idy~~--~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF 386 (463)
+..++..++ ..+..-...+|+.||+|++ |.|+..||-.+|..+- ..-.++-++-.++.+|.|+||.|+++|+
T Consensus 49 F~~i~~~~fp~gd~~~y~~~vF~~fD~~~d-g~i~F~Efi~als~~~-----rGt~eekl~w~F~lyD~dgdG~It~~Em 122 (193)
T KOG0044|consen 49 FREIYASFFPDGDASKYAELVFRTFDKNKD-GTIDFLEFICALSLTS-----RGTLEEKLKWAFRLYDLDGDGYITKEEM 122 (193)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHhcccCC-CCcCHHHHHHHHHHHc-----CCcHHHHhhhhheeecCCCCceEcHHHH
Confidence 334444444 3455667899999999999 9999999888887643 2455666778899999999999999999
Q ss_pred HHHH
Q 012456 387 KQRM 390 (463)
Q Consensus 387 ~~~l 390 (463)
+.++
T Consensus 123 l~iv 126 (193)
T KOG0044|consen 123 LKIV 126 (193)
T ss_pred HHHH
Confidence 8776
No 68
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.00022 Score=76.30 Aligned_cols=103 Identities=19% Similarity=0.133 Sum_probs=56.9
Q ss_pred eEEEEeCCcceEeeeEEEEecccc------CceeeeEEeeeecccccccCCCCceEEEEEeecCCCCCCCchhhHHHHHH
Q 012456 137 LLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVY 210 (463)
Q Consensus 137 ~ai~~r~sr~~i~~~~~~~~~~~~------~r~~~~~~~~~~~~~~~~~~~~~~~v~v~ntHL~~~~~~~~~~~R~~Q~~ 210 (463)
+.+|+|....+.+..-...--..+ ++.|..+.+.. ....++++|+||.++. ..-..|-.-..
T Consensus 630 L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~----------~~TsfCFv~SHlAAG~--snv~ERn~DY~ 697 (1080)
T KOG0566|consen 630 LLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVY----------HATSFCFVCSHLAAGQ--SNVEERNEDYK 697 (1080)
T ss_pred EEEEEcccccchhhhcccceeecccccccCCCceEEEEEEe----------ccccEEEEeccccccc--chHhhhhhhHH
Confidence 345677777776655433222211 33333444433 5678999999997754 22344655566
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEeecCCCc---cccchhhhhhcC
Q 012456 211 KILQYLELYQTENKLNHIPIILCGDWNGS---KRGHVYKFLRSQ 251 (463)
Q Consensus 211 ~l~~~l~~~~~~~~~~~~pvIl~GDFN~~---p~s~~~~~l~~~ 251 (463)
.|.+-|.--....=-.+..|++|||||-. +.+.+-+.++.+
T Consensus 698 tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~ 741 (1080)
T KOG0566|consen 698 TIARKLRFPRGRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQ 741 (1080)
T ss_pred HHHHhccccCCccccCCceEEEecccceeecCCHHHHHHHHHhc
Confidence 66555432111100124569999999965 445555555443
No 69
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.61 E-value=0.00011 Score=61.52 Aligned_cols=65 Identities=26% Similarity=0.489 Sum_probs=55.0
Q ss_pred hhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHH----HHHHHhhCCCCCceeehHHHHHHHh
Q 012456 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQET----DDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 322 ~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~----~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
..+.=+|+.+|-|++ ++|-..+|.+.+..|-- ..++++|+ ++++.++|.||||++++.||...+.
T Consensus 108 lK~~YAFkIYDfd~D-~~i~~~DL~~~l~~lTr----~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 108 LKAKYAFKIYDFDGD-EFIGHDDLEKTLTSLTR----DELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred hhhhheeEEeecCCC-CcccHHHHHHHHHHHhh----ccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 345568999999999 99999999999998742 36898886 5688899999999999999976664
No 70
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.60 E-value=0.00019 Score=49.41 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=38.4
Q ss_pred cccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 339 VITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 339 ~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
+++.+|++.+|+.+++ .++++.+..+|+.+|++++|.++-+||....
T Consensus 1 kmsf~Evk~lLk~~NI-----~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNI-----EMDDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp EBEHHHHHHHHHHTT---------HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcc-----CcCHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 3688999999999998 8999999999999999999999999997544
No 71
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.44 E-value=0.00019 Score=42.07 Aligned_cols=24 Identities=38% Similarity=0.746 Sum_probs=21.5
Q ss_pred HHHHHHhhCCCCCceeehHHHHHH
Q 012456 366 TDDLWAQADVDGNGVVNYEEFKQR 389 (463)
Q Consensus 366 ~~~l~~~~D~d~~g~I~~~EF~~~ 389 (463)
++++|+.+|.|+||.|+++||.+.
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 467899999999999999999764
No 72
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.28 E-value=0.00053 Score=69.05 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=60.9
Q ss_pred hhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhc
Q 012456 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 392 (463)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~ 392 (463)
+.....+.+.|..+| |++ |+|+..||..++.+.+.. ...+..+++++++...+.|.+|.|+|+||+..+.+
T Consensus 15 q~El~~l~~kF~~~d-~~~-G~v~~~~l~~~f~k~~~~--~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 15 QEELRELKEKFNKLD-DQK-GYVTVYELPDAFKKAKLP--LGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHHHHHhhc-CCC-CeeehHHhHHHHHHhccc--ccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 445677889999999 999 999999999999998741 12456999999999999999999999999987754
No 73
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.26 E-value=0.00024 Score=41.70 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.3
Q ss_pred HhHhhhhccccCCCCcccHHHHHHHH
Q 012456 324 ENDAFAFFKADNNGDVITHSAFCEAL 349 (463)
Q Consensus 324 ~~~~F~~~D~d~~~g~I~~~el~~~l 349 (463)
+.++|+.+|.|+| |.|+.+||++++
T Consensus 1 l~~~F~~~D~d~D-G~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGD-GKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSS-SEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCC-CcCCHHHHHHHC
Confidence 4679999999999 999999999864
No 74
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.24 E-value=0.00083 Score=67.58 Aligned_cols=52 Identities=19% Similarity=0.439 Sum_probs=45.4
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
...+..+|+.+|.|++ |.|+.+||. + ++.+|..+|.|+||.|+++||...+-
T Consensus 333 ~~~l~~aF~~~D~dgd-G~Is~~E~~------~------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 333 THAAQEIFRLYDLDGD-GFITREEWL------G------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred hHHHHHHHHHhCCCCC-CcCcHHHHH------H------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 4557899999999999 999999993 2 46799999999999999999987663
No 75
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.0012 Score=53.03 Aligned_cols=64 Identities=27% Similarity=0.454 Sum_probs=48.4
Q ss_pred hHhhhhccccCCCCcccHHHHHHHHHhccc---CCC-CCC-CCHHHHHHHH----HhhCCCCCceeehHHHHHH
Q 012456 325 NDAFAFFKADNNGDVITHSAFCEALRQVNL---AGL-PYG-LSFQETDDLW----AQADVDGNGVVNYEEFKQR 389 (463)
Q Consensus 325 ~~~F~~~D~d~~~g~I~~~el~~~l~~lg~---~~~-~~~-~~~~~~~~l~----~~~D~d~~g~I~~~EF~~~ 389 (463)
-..|++.|-|++ ++|+--||.+++.-..- .|+ +.+ .++.|++.|+ +.-|.|+||.|||.||++.
T Consensus 70 fHYF~MHDldkn-n~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKN-NFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcC-CcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 478999999999 99999999999974321 122 444 4466665554 5569999999999999764
No 76
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.08 E-value=0.0003 Score=58.14 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=45.3
Q ss_pred hhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHH
Q 012456 319 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQ 388 (463)
Q Consensus 319 ~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~ 388 (463)
.....+.=.|..+|.|+| |.|+.+||..+...|. ..+..++.+++.+|.|+||.|+..|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d-~~L~~~El~~l~~~l~-------~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKD-GVLDRSELKPLRRPLM-------PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-S-SEE-TTTTGGGGSTTS-------TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCC-CccCHHHHHHHHHHHh-------hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344556667999999999 9999999998866542 5566789999999999999999999853
No 77
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.86 E-value=0.0016 Score=40.35 Aligned_cols=27 Identities=22% Similarity=0.548 Sum_probs=22.9
Q ss_pred HHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 365 ETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 365 ~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
+++.+|..+|.|+||.|+++||...|.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 468899999999999999999977664
No 78
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.00098 Score=63.63 Aligned_cols=64 Identities=17% Similarity=0.280 Sum_probs=51.8
Q ss_pred HhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhc
Q 012456 324 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 392 (463)
Q Consensus 324 ~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~ 392 (463)
-..-|+.-|.|++ |.+|.+||-.+|-= ++-..+.+--|++-|...|+|+||.|+++||+.-|+.
T Consensus 165 De~rFk~AD~d~d-g~lt~EEF~aFLHP----Ee~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 165 DEERFKAADQDGD-GSLTLEEFTAFLHP----EEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred HHHHHhhcccCCC-CcccHHHHHhccCh----hhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 4567999999999 99999999988742 1112355666788899999999999999999988865
No 79
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.67 E-value=0.0029 Score=70.70 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=59.4
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCC--CH-----HHHHHHHHhhCCCCCceeehHHHHHHHhcc
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGL--SF-----QETDDLWAQADVDGNGVVNYEEFKQRMWNL 393 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~--~~-----~~~~~l~~~~D~d~~g~I~~~EF~~~l~~~ 393 (463)
..+..-+|+.||++.+ |.+++++|+.+|+.+|. .+ -+ .+.+++|..+|++.+|.|+..+|++.|..+
T Consensus 2252 L~EFs~~fkhFDkek~-G~Ldhq~F~sCLrslgY-----~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKN-GRLDHQHFKSCLRSLGY-----DLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHHHhchhhc-cCCcHHHHHHHHHhcCC-----CCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 3456679999999999 99999999999999985 33 23 389999999999999999999999999765
Q ss_pred cc
Q 012456 394 SC 395 (463)
Q Consensus 394 ~~ 395 (463)
+.
T Consensus 2326 ET 2327 (2399)
T KOG0040|consen 2326 ET 2327 (2399)
T ss_pred cc
Confidence 43
No 80
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=96.54 E-value=0.0032 Score=52.16 Aligned_cols=87 Identities=20% Similarity=0.299 Sum_probs=36.3
Q ss_pred EEEEEeecCCCCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCccc------------cchhhhhhcCCc
Q 012456 186 ILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKR------------GHVYKFLRSQGF 253 (463)
Q Consensus 186 v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~------------s~~~~~l~~~g~ 253 (463)
|.|+|++. |+.. ....+.+.+.++..... ..++|++||||.... ....+++.+.++
T Consensus 1 i~i~~vY~--pp~~--------~~~~~~~~l~~~~~~~~--~~~~Ii~GDFN~~~~~w~~~~~~~~~~~~l~~~~~~~~l 68 (119)
T PF14529_consen 1 ITIISVYA--PPSS--------EREEFFDQLRQLLKNLP--PAPIIIGGDFNAHHPNWDSSNTNSRRGEQLLDWLDSHNL 68 (119)
T ss_dssp EEEEEEE----TTS---------CHHHHHHHHHHHHCCT--TSSEEEEEE-----GGGT-SCHHHHHHHHHHHHHHHCTE
T ss_pred CEEEEEEC--CCCc--------cHHHHHHHHHHHHHhCC--CCCEEEEeECCCCchhhhhccccchhHHHHHHHhhhcee
Confidence 56778766 2221 22334445555544331 228999999999521 112233333333
Q ss_pred ccccccccccCCCCCCccccccccCcCCCccccccccccCCCC
Q 012456 254 VSSYDVAHQYTDGDADAHKWVSHRNHRGNICGVDFIWLRNPNQ 296 (463)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~w~s~~~~~~~~~~iD~i~~~~~~~ 296 (463)
... +.. ....+|..... ..+||++|.+.+..
T Consensus 69 ~~~----~~~----~~~~T~~~~~~----~s~iD~~~~s~~~~ 99 (119)
T PF14529_consen 69 VDL----NPP----GRPPTFISNSH----GSRIDLILTSDNLL 99 (119)
T ss_dssp EE-------T----T---SEEECCC----EE--EEEEEECCGC
T ss_pred eee----ecC----CCCCcccCCCC----CceEEEEEECChHH
Confidence 321 110 12245544422 45799999987643
No 81
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.48 E-value=0.0017 Score=64.26 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=56.8
Q ss_pred hhhhhhHhHhhhhccccCCCCcccHHHHHHHHHh------cccCCCCCCCCHH-----HHHH--HHHhhCCCCCceeehH
Q 012456 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQ------VNLAGLPYGLSFQ-----ETDD--LWAQADVDGNGVVNYE 384 (463)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~------lg~~~~~~~~~~~-----~~~~--l~~~~D~d~~g~I~~~ 384 (463)
.......+-+|++||.|+| |.|+.+||..+..- +|. ++-..++.. ++.. ...-|-.+++++++++
T Consensus 229 S~p~~~F~IAFKMFD~dgn-G~IdkeEF~~v~~li~sQ~~~g~-~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~d 306 (489)
T KOG2643|consen 229 SIPERNFRIAFKMFDLDGN-GEIDKEEFETVQQLIRSQTSVGV-RHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSID 306 (489)
T ss_pred ccCcccceeeeeeeecCCC-CcccHHHHHHHHHHHHhccccce-ecccCccccceehhhhhhhHHHHhhccCCCccccHH
Confidence 4456667779999999999 99999999887631 222 111122222 2222 4455789999999999
Q ss_pred HHHHHHhc------cccccccccccCCCc
Q 012456 385 EFKQRMWN------LSCSAQIENNCNDNM 407 (463)
Q Consensus 385 EF~~~l~~------~~~~~~~~~~~~~~~ 407 (463)
||++.+-+ ...+.+.+...+|.+
T Consensus 307 eF~~F~e~Lq~Eil~lEF~~~~~~~~g~I 335 (489)
T KOG2643|consen 307 EFLKFQENLQEEILELEFERFDKGDSGAI 335 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 99876632 233455555555555
No 82
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=96.13 E-value=0.012 Score=65.07 Aligned_cols=80 Identities=24% Similarity=0.427 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHH
Q 012456 306 AEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEE 385 (463)
Q Consensus 306 ~~~~~~~idy~~~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~E 385 (463)
.+.+....|+.++-....-.+.|+.+|+|+. |-|+++||+++|..-. ..+..|++-++.-...|.|...+|++
T Consensus 4041 vemilkffdmflklkdltssdtfkeydpdgk-giiskkdf~kame~~k------~ytqse~dfllscae~dend~~~y~d 4113 (5019)
T KOG2243|consen 4041 VEMILKFFDMFLKLKDLTSSDTFKEYDPDGK-GIISKKDFHKAMEGHK------HYTQSEIDFLLSCAEADENDMFDYED 4113 (5019)
T ss_pred HHHHHHHHHHHHHHhhccccccchhcCCCCC-ccccHHHHHHHHhccc------cchhHHHHHHHHhhccCccccccHHH
Confidence 4566667777776666777899999999999 9999999999998755 58999999999999999999999999
Q ss_pred HHHHHhc
Q 012456 386 FKQRMWN 392 (463)
Q Consensus 386 F~~~l~~ 392 (463)
|+..+..
T Consensus 4114 fv~rfhe 4120 (5019)
T KOG2243|consen 4114 FVDRFHE 4120 (5019)
T ss_pred HHHHhcC
Confidence 9987754
No 83
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.68 E-value=0.012 Score=34.44 Aligned_cols=27 Identities=33% Similarity=0.625 Sum_probs=23.4
Q ss_pred HHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 365 ETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 365 ~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
+++.+++.+|.+++|.|+++||...+.
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 467899999999999999999977653
No 84
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=95.60 E-value=0.03 Score=55.08 Aligned_cols=187 Identities=18% Similarity=0.179 Sum_probs=85.7
Q ss_pred HHHHhhCCCcEEEEeeeecChhhHHHHHHHHhccCCccEEEeccC-CCC-CceeEEEEeCCcceEeeeEEEEe--ccccC
Q 012456 86 LDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTFSLART-NNR-GDGLLTALHRDYFNVLNYRELLF--NDFGD 161 (463)
Q Consensus 86 ~~~i~~~~~DIIcLQEv~~~~~~~~~~l~~~l~~~gY~~~~~~~~-~~~-~~G~ai~~r~sr~~i~~~~~~~~--~~~~~ 161 (463)
..++....+|++|+||........ .....- ..+|...+...+ +.. ..|++.+ +++..+...--.. .....
T Consensus 83 ~~~~~~~l~d~~~~~~t~~~i~~~-~~~~~~--~~~~~~~~~~~~~~~~~y~~~~~~---~~~~p~~v~~~~~~~~s~h~ 156 (335)
T KOG1294|consen 83 DPEISSELRDLQCLLETKCTIDSG-PCSHPT--EKGYTHSLLSCASKKDGYSGEIDY---SKFKPLKVHYGFGAMGSDHR 156 (335)
T ss_pred chhccccchhhhhhhhccceeccC-cceecc--cCCcccceeecccccCCccceeee---eecccceeeecccccCCccC
Confidence 345566678999999984211111 111111 236744333222 111 2233333 3333332221111 11223
Q ss_pred ceeeeEEeeeecccccccCCCCceEEEEEeecCCCCCCCchhhHHHHH--HHHHHHHHHHHhhcC---CCCCcEEEeecC
Q 012456 162 RVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQV--YKILQYLELYQTENK---LNHIPIILCGDW 236 (463)
Q Consensus 162 r~~~~~~~~~~~~~~~~~~~~~~~v~v~ntHL~~~~~~~~~~~R~~Q~--~~l~~~l~~~~~~~~---~~~~pvIl~GDF 236 (463)
.++..+.++. ..+.++|+|+.. .....+.+.-. ..+-..++....+.+ ....|++.|||.
T Consensus 157 ~~g~~i~~e~------------e~~~l~~~y~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~ 221 (335)
T KOG1294|consen 157 PVGRVIIAEF------------EIFILINTYVPN---IGGGLVNLVYRILDRWDKEIEEKRKKQSSSKNLKAPVVICGDL 221 (335)
T ss_pred ccceEEEEee------------cceeeccccCcc---cccccchhhhhhhhhhHHHHHHHhhhccccccccCcceecccc
Confidence 3444444443 467788888843 11222222111 223333333332221 223589999999
Q ss_pred CCccccch-------------------------h-hhhhcCC-cccccccccccCCCCCCccccccccCcCCC--ccccc
Q 012456 237 NGSKRGHV-------------------------Y-KFLRSQG-FVSSYDVAHQYTDGDADAHKWVSHRNHRGN--ICGVD 287 (463)
Q Consensus 237 N~~p~s~~-------------------------~-~~l~~~g-~~~~~~~~~~~~~~~~~~~~w~s~~~~~~~--~~~iD 287 (463)
|..+...- + ..+...| ++|+|...++-.. .....|....+.+.. -.++|
T Consensus 222 nvs~~~i~~~~~~~~~~~~~~~~~~~t~e~R~~~~~~~~~~~~~iDt~r~~~~~~~--~~~t~Wk~~~~~r~~~~~~r~d 299 (335)
T KOG1294|consen 222 NVSHEEIDPSKPLVSPAGNTLSNAGFTPEERDSFFAELLEKGPLIDTYRELHKDQK--KAYTFWKYMPNGRQRGHGERCD 299 (335)
T ss_pred ccchhhccccccccccccCCcCCCCCCHHHhhhHHHhhccCCcceeehhhhcCCcc--ccccchhhccccccCCCCCcee
Confidence 98753111 1 2233444 6666654443211 123456655553222 24599
Q ss_pred cccccCCC
Q 012456 288 FIWLRNPN 295 (463)
Q Consensus 288 ~i~~~~~~ 295 (463)
|+.+++|.
T Consensus 300 y~~Vsk~~ 307 (335)
T KOG1294|consen 300 YILVSKPG 307 (335)
T ss_pred EEEecCcC
Confidence 99999884
No 85
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=95.43 E-value=0.011 Score=54.01 Aligned_cols=65 Identities=15% Similarity=0.283 Sum_probs=48.9
Q ss_pred hhHhHhhhhccccCCCCcccHHHHHHHHHh-cccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 322 LAENDAFAFFKADNNGDVITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 322 ~~~~~~F~~~D~d~~~g~I~~~el~~~l~~-lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
..+..+|...|.|.+ |+||..|+++-+.. ..- | ..-+.++-+-.|+..|.|+||.|.++||...+
T Consensus 101 rklmviFsKvDVNtD-rkisAkEmqrwImektaE--H-fqeameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTD-RKISAKEMQRWIMEKTAE--H-FQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHHHhhcccCcc-ccccHHHHHHHHHHHHHH--H-HHHHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 456789999999999 99999999987764 210 0 01223444567888999999999999996554
No 86
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.22 E-value=0.021 Score=33.38 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=24.5
Q ss_pred HhHhhhhccccCCCCcccHHHHHHHHHh
Q 012456 324 ENDAFAFFKADNNGDVITHSAFCEALRQ 351 (463)
Q Consensus 324 ~~~~F~~~D~d~~~g~I~~~el~~~l~~ 351 (463)
+..+|..+|.+++ |.|+..||+.+++.
T Consensus 2 ~~~~f~~~d~~~~-g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGD-GKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCC-CcEeHHHHHHHHHh
Confidence 5679999999999 99999999999875
No 87
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=95.22 E-value=0.038 Score=49.85 Aligned_cols=61 Identities=23% Similarity=0.360 Sum_probs=28.1
Q ss_pred hHhhhhccccCCCCc-ccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 325 NDAFAFFKADNNGDV-ITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 325 ~~~F~~~D~d~~~g~-I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
..+|..||++++ |. |+.++|-.+|...- +....++.++-.++.+|.+++|.|+.+|+...+
T Consensus 69 ~rI~~~f~~~~~-~~~v~F~~Fv~~ls~f~----~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv 130 (187)
T KOG0034|consen 69 DRIIDRFDTDGN-GDPVDFEEFVRLLSVFS----PKASKREKLRFAFRVYDLDGDGFISREELKQIL 130 (187)
T ss_pred HHHHHHHhccCC-CCccCHHHHHHHHhhhc----CCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHH
Confidence 344444444444 33 55444444444322 111222244445555555555555555554444
No 88
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.05 E-value=0.053 Score=41.99 Aligned_cols=66 Identities=17% Similarity=0.282 Sum_probs=52.2
Q ss_pred hHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCC----CCceeehHHHHHHHhcc
Q 012456 323 AENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD----GNGVVNYEEFKQRMWNL 393 (463)
Q Consensus 323 ~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d----~~g~I~~~EF~~~l~~~ 393 (463)
++..+|..+-. +. +.+|.++|+..|+.-. .-...+.++++.+|..+..+ ..+.+++++|...|.++
T Consensus 1 ei~~if~~ys~-~~-~~mt~~~f~~FL~~eQ---~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DK-EYMTAEEFRRFLREEQ---GEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TS-SSEEHHHHHHHHHHTS---S-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CC-CcCCHHHHHHHHHHHh---ccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 36788999955 55 8999999999998632 01246899999999998655 47999999999998754
No 89
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.90 E-value=0.041 Score=52.78 Aligned_cols=75 Identities=13% Similarity=0.245 Sum_probs=59.1
Q ss_pred HHHHHH-hhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 312 IIKCQL-QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 312 ~idy~~-~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
..+++. .+....+..+|..+|.+++ |+|+.+||+.-+...- ...-.+++..-|...|.|.||.|+++|+...+
T Consensus 66 ~fd~l~~ee~~~rl~~l~~~iD~~~D-gfv~~~El~~wi~~s~-----k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~ 139 (325)
T KOG4223|consen 66 EFDQLTPEESQERLGKLVPKIDSDSD-GFVTESELKAWIMQSQ-----KKYVVEEAARRWDEYDKNKDGFITWEEYLPQT 139 (325)
T ss_pred hhhhhCcchhHHHHHHHHhhhcCCCC-CceeHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccCccceeeHHHhhhhh
Confidence 344443 4456778899999998898 9999999999877643 13456677888899999999999999998877
Q ss_pred hc
Q 012456 391 WN 392 (463)
Q Consensus 391 ~~ 392 (463)
+.
T Consensus 140 ~~ 141 (325)
T KOG4223|consen 140 YG 141 (325)
T ss_pred hh
Confidence 63
No 90
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=94.69 E-value=0.18 Score=52.89 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=35.2
Q ss_pred CCceEEEEEeecCCCCCCCchhhHHHHHHHHHHHHHH--HHhhcC----CCCCcEEEeecCCCc
Q 012456 182 GQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLEL--YQTENK----LNHIPIILCGDWNGS 239 (463)
Q Consensus 182 ~~~~v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~--~~~~~~----~~~~pvIl~GDFN~~ 239 (463)
.+..|++||+||.++........|..+...|++.+.- ...... ....-+|++||||--
T Consensus 418 ~~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYR 481 (621)
T PLN03191 418 FQSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYR 481 (621)
T ss_pred cCcEEEEEEeccccccccchHHHHHHHHHHHHhccccCcccccCCCccccccceEEEecCcccc
Confidence 6689999999998765332233466667777654321 000000 013469999999964
No 91
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=93.98 E-value=0.053 Score=38.03 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=27.2
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHh
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQ 351 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~ 351 (463)
...++..+|..+|.|++ |.|+..||..++..
T Consensus 23 s~~e~~~l~~~~D~~~~-G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 23 SEEEVDRLFREFDTDGD-GYISFDEFISMMQR 53 (54)
T ss_dssp CHHHHHHHHHHHTTSSS-SSEEHHHHHHHHHH
T ss_pred CHHHHHHHHHhcccCCC-CCCCHHHHHHHHHh
Confidence 34558899999999999 99999999999864
No 92
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=93.57 E-value=0.27 Score=49.33 Aligned_cols=56 Identities=20% Similarity=0.154 Sum_probs=34.2
Q ss_pred CCceEEEEEeecCCCCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCc
Q 012456 182 GQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGS 239 (463)
Q Consensus 182 ~~~~v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~ 239 (463)
....++++|.||.++- ...+.|....+.+..-|.--....--....++++||||..
T Consensus 163 ~~t~~cFv~shlaag~--~N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNyR 218 (460)
T COG5411 163 ERTSFCFVNSHLAAGV--NNIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNYR 218 (460)
T ss_pred ecCCcEEEecchhccc--ccHHHHHHHHHHHHHheecCCCceecccceEEEecccCce
Confidence 3457999999997644 3345677767776665543211000013349999999953
No 93
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=93.47 E-value=0.1 Score=38.18 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=23.7
Q ss_pred HHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 366 TDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 366 ~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
++++|+.+|.|++|.|+.+||...+.
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~ 27 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALK 27 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHH
Confidence 67899999999999999999987774
No 94
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=93.26 E-value=0.31 Score=46.36 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=34.1
Q ss_pred CCceEEEEEeecCCCCCC---------CchhhHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCccccc
Q 012456 182 GQQEILIVNTHLLFPHDS---------SLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGH 243 (463)
Q Consensus 182 ~~~~v~v~ntHL~~~~~~---------~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~ 243 (463)
++..|.++|+||...... .+...|..-...+++.+.... .+..|+++.||||---+..
T Consensus 78 ~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~----~~~~~lF~fGDfNyRld~~ 144 (356)
T PTZ00312 78 GTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFI----SPSDPLFIFGDFNVRLDGH 144 (356)
T ss_pred CCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhcc----CCCCcEEEeccceeeeccc
Confidence 678899999999652210 112233333333443333322 2467999999999865533
No 95
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.91 E-value=0.12 Score=54.78 Aligned_cols=64 Identities=23% Similarity=0.382 Sum_probs=56.8
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
.....+.+|+.+|+..+ |++|-..-+.+|.+-+ ++...+..+|...|.|+||+++.+||+-.|+
T Consensus 193 ~klKY~QlFNa~Dktrs-G~Lsg~qaR~aL~qS~-------Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRS-GYLSGQQARSALGQSG-------LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhhHHHHHhhhcccccc-cccccHHHHHHHHhcC-------CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 44567889999999999 9999999999998855 8888999999999999999999999986663
No 96
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.49 E-value=0.21 Score=50.42 Aligned_cols=65 Identities=22% Similarity=0.337 Sum_probs=57.6
Q ss_pred hhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 319 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 319 ~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
++.+....-|+.+-.|-+ |+|+-+--+.++.+- ++.-+|+.-+|...|.|.||-+++.||+..|.
T Consensus 228 EQReYYvnQFrtvQpDp~-gfisGsaAknFFtKS-------klpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPH-GFISGSAAKNFFTKS-------KLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHHHhhhhcccCCcc-cccccHHHHhhhhhc-------cCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 445567788999999999 999999999999883 58889999999999999999999999998874
No 97
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=91.77 E-value=0.081 Score=52.74 Aligned_cols=53 Identities=25% Similarity=0.410 Sum_probs=43.7
Q ss_pred hccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 330 FFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 330 ~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
++|-+++ |-||.+|..-++.-|. .++...+--|++||.||||.||-+||...+
T Consensus 207 F~~lg~~-GLIsfSdYiFLlTlLS-------~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~ 259 (489)
T KOG2643|consen 207 FYKLGES-GLISFSDYIFLLTLLS-------IPERNFRIAFKMFDLDGNGEIDKEEFETVQ 259 (489)
T ss_pred EEEcCCC-CeeeHHHHHHHHHHHc-------cCcccceeeeeeeecCCCCcccHHHHHHHH
Confidence 4466777 9999999999988865 556667788999999999999999996433
No 98
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=90.97 E-value=0.23 Score=48.00 Aligned_cols=62 Identities=8% Similarity=0.035 Sum_probs=52.1
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhc
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 392 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~ 392 (463)
...+-=+|..+|.|.| |.|+.+||..+-.. -.+.-|+.+|+.+|...||.|+-.|+...++.
T Consensus 249 Kds~gWMFnklD~N~D-l~Ld~sEl~~I~ld---------knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYD-LLLDQSELRAIELD---------KNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhccccccc-cccCHHHhhhhhcc---------CchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 3445568999999999 99999999876432 45778999999999999999999999877755
No 99
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=90.66 E-value=0.87 Score=39.82 Aligned_cols=63 Identities=17% Similarity=0.362 Sum_probs=46.8
Q ss_pred HhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 326 DAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 326 ~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
..|..|...+. ..++-+-|.++++..+|.+ ..++..+++-+|..+-..+..+|+|++|+..|-
T Consensus 6 ~~f~~fG~~~~-~~m~~~~F~Kl~kD~~i~d--~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 6 KAFASFGKKNG-TEMDSKNFAKLCKDCGIID--KKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp HHHHCSSTSTS-SEEEHHHHHHHHHHTSS----SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred HHHHHhcCCcc-ccccHHHHHHHHHHcCCCC--CCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 34444454444 6899999999999998742 349999999999998777778899999988773
No 100
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=89.86 E-value=0.57 Score=47.31 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=49.4
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHh----hCCCCCceeehHHHHHHHhc
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQ----ADVDGNGVVNYEEFKQRMWN 392 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~----~D~d~~g~I~~~EF~~~l~~ 392 (463)
..-.+..-|-.+|+|++ |.|++++|...-.. .++.--|+.+|.+ +-.-.+|+|||++|+-.+..
T Consensus 276 ~f~viy~kFweLD~Dhd-~lidk~~L~ry~d~--------tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA 343 (493)
T KOG2562|consen 276 HFYVIYCKFWELDTDHD-GLIDKEDLKRYGDH--------TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILA 343 (493)
T ss_pred HHHHHHHHHhhhccccc-cccCHHHHHHHhcc--------chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHH
Confidence 33445556889999999 99999999876332 5778888999984 44556899999999877753
No 101
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=89.37 E-value=0.13 Score=38.22 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=37.2
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhC----CC---CCceeehHHHHHHH
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQAD----VD---GNGVVNYEEFKQRM 390 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D----~d---~~g~I~~~EF~~~l 390 (463)
.+++.++|+.+ +++. ++||..||++.|.- ++++-++..+. .+ .-|..||..|+..|
T Consensus 5 ~eqv~~aFr~l-A~~K-pyVT~~dLr~~l~p------------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGK-PYVTEEDLRRSLTP------------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp CHHHHHHHHHH-CTSS-SCEEHHHHHHHS-C------------CCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred HHHHHHHHHHH-HcCC-CcccHHHHHHHcCc------------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 46788999999 6666 89999999988642 22233444332 22 23789999997543
No 102
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=88.85 E-value=2.3 Score=42.79 Aligned_cols=70 Identities=17% Similarity=0.368 Sum_probs=50.6
Q ss_pred hhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhc-ccCCCC-CCCC---------------------------H-----
Q 012456 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQV-NLAGLP-YGLS---------------------------F----- 363 (463)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~l-g~~~~~-~~~~---------------------------~----- 363 (463)
.....++.+.|+.+|.+++ |+|+.+.-..++.++ |+ +.| ..+. +
T Consensus 460 ~s~~sdL~~eF~~~D~~ks-G~lsis~Wa~~mE~i~~L-~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~s 537 (631)
T KOG0377|consen 460 RSHRSDLEDEFRKYDPKKS-GKLSISHWAKCMENITGL-NLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSS 537 (631)
T ss_pred HhhhhHHHHHHHhcChhhc-CeeeHHHHHHHHHHHhcC-CCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhH
Confidence 3456778899999999999 999999999988753 22 110 0000 1
Q ss_pred ---------HHHHHHHHhhCCCCCceeehHHHHHH
Q 012456 364 ---------QETDDLWAQADVDGNGVVNYEEFKQR 389 (463)
Q Consensus 364 ---------~~~~~l~~~~D~d~~g~I~~~EF~~~ 389 (463)
..++.+|+..|.|+.|.|+.+||...
T Consensus 538 lvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a 572 (631)
T KOG0377|consen 538 LVETLYRNKSSLETIFNIIDADNSGEISLDEFRTA 572 (631)
T ss_pred HHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHH
Confidence 12456788899999999999999543
No 103
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=88.35 E-value=0.24 Score=39.48 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=23.3
Q ss_pred HHHHHHHhhCCCCCceeehHHHHHHHhc
Q 012456 365 ETDDLWAQADVDGNGVVNYEEFKQRMWN 392 (463)
Q Consensus 365 ~~~~l~~~~D~d~~g~I~~~EF~~~l~~ 392 (463)
+++..|..+|.|++|.|+++|+...+..
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 4566788899999999999999877743
No 104
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=87.43 E-value=1.2 Score=42.63 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=45.2
Q ss_pred CCceEEEEEeecCC--------CCC-CCchhhHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCccccc-hhhhhhcC
Q 012456 182 GQQEILIVNTHLLF--------PHD-SSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGH-VYKFLRSQ 251 (463)
Q Consensus 182 ~~~~v~v~ntHL~~--------~~~-~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~-~~~~l~~~ 251 (463)
.++.+.+||.||.- ... ..++..|.+|+..++..|..-.- ....+++.||||..-++. ....|...
T Consensus 167 ~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~~~----~~~~~fVfGdfNfrLds~s~ln~l~a~ 242 (391)
T KOG1976|consen 167 HGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEEGL----RNDAIFVFGDFNFRLDSTSLLNYLAAT 242 (391)
T ss_pred cCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhhcc----CceEEEEecccccccchHHHHHHHhcC
Confidence 78899999999932 111 12455688888888877765432 355799999999987654 45555443
Q ss_pred C
Q 012456 252 G 252 (463)
Q Consensus 252 g 252 (463)
.
T Consensus 243 q 243 (391)
T KOG1976|consen 243 Q 243 (391)
T ss_pred C
Confidence 3
No 105
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=87.24 E-value=1.4 Score=42.39 Aligned_cols=97 Identities=11% Similarity=0.185 Sum_probs=67.4
Q ss_pred cccccccCCCCCCCCchhhhHHHHHHHHHHHH-hh------------h-hhhHhHhhhhccccCCCCcccHHHH---HHH
Q 012456 286 VDFIWLRNPNQSRKPLQASWAEAVFSIIKCQL-QK------------A-SLAENDAFAFFKADNNGDVITHSAF---CEA 348 (463)
Q Consensus 286 iD~i~~~~~~~~~~~~~T~~~~~~~~~idy~~-~~------------~-~~~~~~~F~~~D~d~~~g~I~~~el---~~~ 348 (463)
+|-.-++....+.++..|.|...+...+..-+ .. . +..+.=.|..+|+|.+ +-|...|. +.+
T Consensus 283 ~dp~kvR~l~gC~e~KKteFL~~Ll~aL~Tdmv~s~~~as~gr~~e~DeeRvv~w~F~qLdkN~n-n~i~rrEwKpFK~~ 361 (421)
T KOG4578|consen 283 VDPKKVRRLNGCPEKKKTEFLTSLLDALKTDMVMSGINASNGRKSEPDEERVVHWYFNQLDKNSN-NDIERREWKPFKRV 361 (421)
T ss_pred cccccccccCCCCcchhhHHHHHHHHHHhhhhhhhcccccCCcccCCChhheeeeeeeeeccccc-CccchhhcchHHHH
Confidence 34333444456677778888877777665433 11 1 1123346899999999 99999995 555
Q ss_pred HHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 349 LRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 349 l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
|..- .-...-.++|++.+|.|+|-+|++.|++..|
T Consensus 362 l~k~-------s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 362 LLKK-------SKPRKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred HHhh-------ccHHHHhhhcchhcccCCCceecHHHHhhhh
Confidence 5442 2345667889999999999999999997766
No 106
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=85.93 E-value=1.2 Score=29.92 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=26.7
Q ss_pred hhhhhHhHhhhhc-cccCCCCcccHHHHHHHHHh
Q 012456 319 KASLAENDAFAFF-KADNNGDVITHSAFCEALRQ 351 (463)
Q Consensus 319 ~~~~~~~~~F~~~-D~d~~~g~I~~~el~~~l~~ 351 (463)
++...+.++|+.+ ..+|+...+++.||+.+|..
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4566788999888 45666689999999999975
No 107
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=85.85 E-value=0.46 Score=46.50 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=45.6
Q ss_pred eEEEEEeecCCCCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCCcEEEeecCCCccccchhhhhh
Q 012456 185 EILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLR 249 (463)
Q Consensus 185 ~v~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~ 249 (463)
-+.+.++|+.|.+-. ...|.+|...+++.+.+.... ..+.++|||||..|.+..|-..+
T Consensus 139 ~li~~~~~~f~~p~~--~~er~r~t~~~lnri~e~~~~----~w~~l~~~l~n~e~gd~~~va~T 197 (378)
T COG5239 139 GLILAVTHLFWHPYG--YYERFRQTYILLNRIGEKDNI----AWVCLFVGLFNKEPGDTPYVANT 197 (378)
T ss_pred hhhhhhhHhhcccce--eehhhhHHHHHHHHHhhhhhc----chhheeeeeccCCCCCceeEEec
Confidence 467889999997744 456888999999888776542 36779999999999888776553
No 108
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=84.88 E-value=0.98 Score=35.50 Aligned_cols=31 Identities=6% Similarity=0.222 Sum_probs=28.0
Q ss_pred hhHhHhhhhccccCCCCcccHHHHHHHHHhcc
Q 012456 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVN 353 (463)
Q Consensus 322 ~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg 353 (463)
..+.++++.+|.|++ |.|+.+||..++..+.
T Consensus 47 ~~v~~mi~~~D~d~D-G~I~F~EF~~l~~~l~ 77 (89)
T cd05022 47 EGLEEKMKNLDVNQD-SKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHhCCCCC-CCCcHHHHHHHHHHHH
Confidence 568899999999999 9999999999988764
No 109
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=84.71 E-value=1 Score=35.69 Aligned_cols=33 Identities=3% Similarity=0.191 Sum_probs=29.1
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhcc
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 353 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg 353 (463)
....+.++++.+|.|++ |.|+.+||..++..+.
T Consensus 51 ~~~~v~~i~~elD~n~d-G~Idf~EF~~l~~~l~ 83 (93)
T cd05026 51 DPMLVDKIMNDLDSNKD-NEVDFNEFVVLVAALT 83 (93)
T ss_pred CHHHHHHHHHHhCCCCC-CCCCHHHHHHHHHHHH
Confidence 34578899999999999 9999999999998765
No 110
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=84.54 E-value=1.3 Score=45.96 Aligned_cols=64 Identities=28% Similarity=0.367 Sum_probs=56.8
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
....+.-|.++|.|+. |+++..++.++|+..+. ..+++.+.+++++.|.+-+|.+...||.+.+
T Consensus 592 ~~~~~~rf~~lD~~k~-~~~~i~~v~~vlk~~~~-----~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~ 655 (680)
T KOG0042|consen 592 FLRRKTRFAFLDADKK-AYQAIADVLKVLKSENV-----GWDEDRLHEELQEADENLNGFVELREFLQLM 655 (680)
T ss_pred HHHHHHHHHhhcchHH-HHHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhhcceeeHHHHHHHH
Confidence 3445578999999999 99999999999998773 7899999999999999999999999997766
No 111
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=84.28 E-value=0.93 Score=37.01 Aligned_cols=32 Identities=28% Similarity=0.559 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 360 GLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 360 ~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
-|++++.+.++.++-.|..|.+.|.||+..+-
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 48999999999999999999999999987763
No 112
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=84.21 E-value=1 Score=43.35 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=48.6
Q ss_pred hhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 322 ~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
..++-+|+.|+.+.| |.+...+|..+|+..- .+..-.+-.++...+...+|+|.|.+|.+.+
T Consensus 296 ~iiq~afk~f~v~eD-g~~ge~~ls~ilq~~l------gv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa 357 (412)
T KOG4666|consen 296 VIIQYAFKRFSVAED-GISGEHILSLILQVVL------GVEVLRVPVLFPSIEQKDDPKIYASNFRKFA 357 (412)
T ss_pred HHHHHHHHhcccccc-cccchHHHHHHHHHhc------CcceeeccccchhhhcccCcceeHHHHHHHH
Confidence 345568999999999 9999988888887532 2444456778888888889999999996655
No 113
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=84.06 E-value=0.9 Score=31.60 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=22.9
Q ss_pred HHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 366 TDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 366 ~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
++.++..+|.+++|.|+++||...+.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~ 27 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALK 27 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 57789999999999999999977664
No 114
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=83.36 E-value=2.6 Score=33.07 Aligned_cols=32 Identities=3% Similarity=0.086 Sum_probs=28.2
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHhcc
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVN 353 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg 353 (463)
...+..+++.+|.|++ |.|+.+||..++..+.
T Consensus 51 ~~~~~~ll~~~D~d~D-G~I~f~EF~~l~~~l~ 82 (89)
T cd05023 51 PGVLDRMMKKLDLNSD-GQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHcCCCCC-CcCcHHHHHHHHHHHH
Confidence 3568889999999999 9999999999988764
No 115
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=83.34 E-value=1.4 Score=30.54 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=26.0
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhc
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQV 352 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~l 352 (463)
...-+..+|+..|++++ |.+..+||...++.|
T Consensus 19 ~~~yA~~LFq~~D~s~~-g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 19 DDEYARQLFQECDKSQS-GRLEGEEFEEFYKRL 50 (51)
T ss_dssp -HHHHHHHHHHH-SSSS-SEBEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcccCC-CCccHHHHHHHHHHh
Confidence 34557789999999999 999999999988764
No 116
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=82.87 E-value=1.9 Score=33.77 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=23.1
Q ss_pred HHHHHHHhhC-CCCCc-eeehHHHHHHHh
Q 012456 365 ETDDLWAQAD-VDGNG-VVNYEEFKQRMW 391 (463)
Q Consensus 365 ~~~~l~~~~D-~d~~g-~I~~~EF~~~l~ 391 (463)
++.+.|..+| .|++| .|+.+||...|.
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~ 37 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELIN 37 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHH
Confidence 4678999998 89999 699999977774
No 117
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=82.82 E-value=1.2 Score=36.94 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=25.4
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHH
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALR 350 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~ 350 (463)
...+...|..+|.|++ |.||.+|++.+|.
T Consensus 79 e~~~~~f~~~~D~n~D-g~IS~~Ef~~cl~ 107 (116)
T cd00252 79 EHCIKPFFESCDLDKD-GSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCC-CCCCHHHHHHHHh
Confidence 4456789999999999 9999999999994
No 118
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=82.80 E-value=3.5 Score=32.43 Aligned_cols=53 Identities=8% Similarity=0.027 Sum_probs=37.5
Q ss_pred CchhhhHHHHHHHHHHHH--hhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcc
Q 012456 300 PLQASWAEAVFSIIKCQL--QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 353 (463)
Q Consensus 300 ~~~T~~~~~~~~~idy~~--~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg 353 (463)
......+.-+..-+..++ .+....+..+|+.+|.|+| |.|+.+||..++..+.
T Consensus 24 Lsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~D-g~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 24 LNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRD-GKVGFQSFFSLIAGLL 78 (91)
T ss_pred CCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHHH
Confidence 334444444444444444 3355678899999999999 9999999999988765
No 119
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=82.36 E-value=1.2 Score=45.05 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhccccccccccccCCCcccccc
Q 012456 359 YGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLSCSAQIENNCNDNMEDSKD 412 (463)
Q Consensus 359 ~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~~~~~~~~~~~~~~~~~~~e~ 412 (463)
+.....+++.+|+.+|.|+||.|+.+||+. ....+...|.+..|.++-+|.
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---~~~~F~~~D~d~DG~Is~eEf 379 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG---SDAVFDALDLNHDGKITPEEM 379 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH---HHHHHHHhCCCCCCCCcHHHH
Confidence 467788999999999999999999999963 134466677777777765554
No 120
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=81.97 E-value=0.95 Score=35.83 Aligned_cols=34 Identities=6% Similarity=0.225 Sum_probs=30.1
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhccc
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNL 354 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~ 354 (463)
....+..+|+.+|.|++ |.|+.+||..++..+++
T Consensus 49 s~~ei~~~~~~~D~~~d-g~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 49 DPMAVDKIMKDLDQNRD-GKVNFEEFVSLVAGLSI 82 (94)
T ss_pred cHHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHHHH
Confidence 34568889999999999 99999999999998875
No 121
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=81.17 E-value=3.6 Score=41.71 Aligned_cols=111 Identities=11% Similarity=0.092 Sum_probs=66.4
Q ss_pred ccccCcCCCccccccccccCC-----CCCCCCchhhhHHHHHHHHHHHHhhhhhhHhHhhhhccccCCCCcccHHHHHHH
Q 012456 274 VSHRNHRGNICGVDFIWLRNP-----NQSRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEA 348 (463)
Q Consensus 274 ~s~~~~~~~~~~iD~i~~~~~-----~~~~~~~~T~~~~~~~~~idy~~~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~ 348 (463)
.-+.+|.....-||.||-.-+ ...++..|..+. -.++....++....+.=+|+.+|-+++ |.|+..||+..
T Consensus 301 ~ry~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv---~FilA~e~k~t~~SleYwFrclDld~~-G~Lt~~el~~f 376 (493)
T KOG2562|consen 301 KRYGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFV---DFILAEEDKDTPASLEYWFRCLDLDGD-GILTLNELRYF 376 (493)
T ss_pred HHHhccchhhHHHHHHHhhccccceeeecCcccHHHHH---HHHHHhccCCCccchhhheeeeeccCC-CcccHHHHHHH
Confidence 334444445445888876111 112223444322 222222224555667789999999999 99999999876
Q ss_pred HHhc--cc-CCCCCCCCHHHH-HHHHHhhCCCCCceeehHHHHH
Q 012456 349 LRQV--NL-AGLPYGLSFQET-DDLWAQADVDGNGVVNYEEFKQ 388 (463)
Q Consensus 349 l~~l--g~-~~~~~~~~~~~~-~~l~~~~D~d~~g~I~~~EF~~ 388 (463)
.+.. .+ +...+.++-+.+ .+|+.++-.-..++|+.++|..
T Consensus 377 yeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 377 YEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 6532 00 012245664544 5577777767788999999963
No 122
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=80.69 E-value=1.8 Score=33.90 Aligned_cols=33 Identities=3% Similarity=0.096 Sum_probs=28.9
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhcc
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 353 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg 353 (463)
...++.++|+.+|.|++ |.|+.+||...+..+.
T Consensus 49 t~~ev~~m~~~~D~d~d-G~Idf~EFv~lm~~l~ 81 (88)
T cd05029 49 QDAEIAKLMEDLDRNKD-QEVNFQEYVTFLGALA 81 (88)
T ss_pred CHHHHHHHHHHhcCCCC-CCCcHHHHHHHHHHHH
Confidence 44678889999999999 9999999999888765
No 123
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=80.25 E-value=1.6 Score=31.49 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=21.9
Q ss_pred HHHHHhhCCCCCceeehHHHHHHHh
Q 012456 367 DDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 367 ~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
++++..+|.|++|.|+.+|+...+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~ 26 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLG 26 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4678999999999999999987764
No 124
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=78.58 E-value=2.4 Score=33.16 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=28.2
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHhcc
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVN 353 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg 353 (463)
...+..+|+.+|.|++ |.|+.+||..++..+.
T Consensus 50 ~~~v~~i~~~~D~d~d-G~I~f~eF~~~~~~~~ 81 (88)
T cd05030 50 QKAIDKIFEDLDTNQD-GQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHcCCCCC-CcCcHHHHHHHHHHHH
Confidence 4668899999999999 9999999999887654
No 125
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=78.42 E-value=3.3 Score=32.53 Aligned_cols=33 Identities=6% Similarity=0.127 Sum_probs=28.7
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhcc
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 353 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg 353 (463)
....+.++|+.+|.|++ |.|+.+||..++..+.
T Consensus 50 s~~~v~~i~~~~D~d~~-G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 50 DADAVDKIMKELDENGD-GEVDFQEFVVLVAALT 82 (92)
T ss_pred CHHHHHHHHHHHCCCCC-CcCcHHHHHHHHHHHH
Confidence 34568899999999999 9999999999988764
No 126
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=78.33 E-value=2.2 Score=33.13 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=23.8
Q ss_pred HHHHHHHHhhCC--CCCceeehHHHHHHHh
Q 012456 364 QETDDLWAQADV--DGNGVVNYEEFKQRMW 391 (463)
Q Consensus 364 ~~~~~l~~~~D~--d~~g~I~~~EF~~~l~ 391 (463)
++++.+|..+|. |++|.|+.+||...+.
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~ 37 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLE 37 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHH
Confidence 456778999999 8999999999987763
No 127
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=78.32 E-value=3.4 Score=42.17 Aligned_cols=106 Identities=15% Similarity=0.158 Sum_probs=66.0
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCC-CCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhc------c
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGL-PYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN------L 393 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~-~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~------~ 393 (463)
..-...+|..||+.++ |.+|.+++...+.+..+..+ +...+.+-|+..+.. +..-.++|.||.+.+.. .
T Consensus 107 Dal~~~aFqlFDr~~~-~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~---~~~r~~ny~~f~Q~lh~~~~E~~~ 182 (694)
T KOG0751|consen 107 DALFEVAFQLFDRLGN-GEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGD---IRKRHLNYAEFTQFLHEFQLEHAE 182 (694)
T ss_pred hHHHHHHHHHhcccCC-CceehHHHHHHHhccccccCCCccCCcchHHHHhhh---HHHHhccHHHHHHHHHHHHHHHHH
Confidence 3445679999999999 99999999999999877432 455666666654433 44556899999776643 2
Q ss_pred ccccccccccCCCcccccccccccccCceeeccccCchhhhc
Q 012456 394 SCSAQIENNCNDNMEDSKDCSEKEILGFAVKDAFLFPSEVEK 435 (463)
Q Consensus 394 ~~~~~~~~~~~~~~~~~e~~~~~~~~g~~v~~a~l~~~~~~~ 435 (463)
+.+.+.|...+|-+.. -+++.+--++.... .||-|+.
T Consensus 183 qafr~~d~~~ng~is~----Ldfq~imvt~~~h~-lt~~v~~ 219 (694)
T KOG0751|consen 183 QAFREKDKAKNGFISV----LDFQDIMVTIRIHL-LTPFVEE 219 (694)
T ss_pred HHHHHhcccCCCeeee----echHhhhhhhhhhc-CCHHHhh
Confidence 3334444444444311 12233333344433 4666664
No 128
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=77.47 E-value=3.1 Score=39.80 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=47.0
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHh-cccCCCCCCCCHHH-------H---HHHHHhhCCCCCceeehHHHHHH
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQ-VNLAGLPYGLSFQE-------T---DDLWAQADVDGNGVVNYEEFKQR 389 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~-lg~~~~~~~~~~~~-------~---~~l~~~~D~d~~g~I~~~EF~~~ 389 (463)
...-...|...|.|+| |+++..||..++.. |.-.=.+.+..+.. + +-+|+..|+|.|-.|+.+||+..
T Consensus 243 ~fdPKTFF~LHD~NsD-GfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 243 QFDPKTFFALHDLNSD-GFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred cCCcchheeeeccCCc-ccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhh
Confidence 3445567889999999 99999999988763 21000111111111 1 23688899999999999999865
Q ss_pred H
Q 012456 390 M 390 (463)
Q Consensus 390 l 390 (463)
-
T Consensus 322 t 322 (442)
T KOG3866|consen 322 T 322 (442)
T ss_pred h
Confidence 5
No 129
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=73.11 E-value=4.2 Score=37.69 Aligned_cols=59 Identities=20% Similarity=0.484 Sum_probs=49.4
Q ss_pred hh-hhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 327 AF-AFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 327 ~F-~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
-| ..+|.|.+ |.+|..||...+--+++ .+.-.++.++|..-|.+++.+++.+|.+..-|
T Consensus 285 EFeElIDsNhD-GivTaeELe~y~dP~n~-----~~alne~~~~ma~~d~n~~~~Ls~eell~r~~ 344 (362)
T KOG4251|consen 285 EFEELIDSNHD-GIVTAEELEDYVDPQNF-----RLALNEVNDIMALTDANNDEKLSLEELLERDW 344 (362)
T ss_pred HHHHHhhcCCc-cceeHHHHHhhcCchhh-----hhhHHHHHHHHhhhccCCCcccCHHHHHHHHh
Confidence 44 35689999 99999999998765554 57788999999999999999999999987654
No 130
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=71.78 E-value=5.3 Score=43.11 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=56.4
Q ss_pred hhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 322 ~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
.-+..+|...|++++ |.++..+...+++.+.. .+...-+..++++.|..+++++..++|.+..
T Consensus 136 ~wi~~~~~~ad~~~~-~~~~~~~~~~~~~~~n~-----~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~ 198 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKN-GHMSFDEVLDLLKQLNV-----QLSESKARRLFKESDNSQTGKLEEEEFVKFR 198 (746)
T ss_pred HHHHHHHHHHccccc-cccchhhHHHHHHHHHH-----hhhHHHHHHHHHHHHhhccceehHHHHHHHH
Confidence 336688999999999 99999999999999985 7889999999999999999999999997654
No 131
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=71.00 E-value=7.7 Score=37.63 Aligned_cols=65 Identities=9% Similarity=0.011 Sum_probs=53.0
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
...++..|..||.+++ |.++..|--.+|.-+- ..+.+++-|+--++.|+.+.||.+.-.+|..++
T Consensus 258 sd~l~~~f~LFde~~t-g~~D~re~v~~lavlc----~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~il 322 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTT-GNGDYRETVKTLAVLC----GPPVTPVIIQYAFKRFSVAEDGISGEHILSLIL 322 (412)
T ss_pred hhhhhhhhheecCCCC-CcccHHHHhhhheeee----CCCCcHHHHHHHHHhcccccccccchHHHHHHH
Confidence 3567889999999999 9999888766665431 146788899999999999999999999995444
No 132
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=66.47 E-value=5.2 Score=37.38 Aligned_cols=26 Identities=31% Similarity=0.612 Sum_probs=21.4
Q ss_pred hHhHHHHHHHHHhhCCCcEEEEeeee
Q 012456 78 WFNRNQTILDWLICERSSVICLQEFW 103 (463)
Q Consensus 78 w~~R~~~i~~~i~~~~~DIIcLQEv~ 103 (463)
.-.|...|++.-......||||||.|
T Consensus 98 ih~r~kaiieaaa~agvniiclqeaw 123 (387)
T KOG0808|consen 98 IHDRLKAIIEAAAVAGVNIICLQEAW 123 (387)
T ss_pred HHHHHHHHHHHHHhcCccEEEeehhh
Confidence 33577778887778899999999998
No 133
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=65.74 E-value=8.1 Score=32.99 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=29.5
Q ss_pred CcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCC-------CceeehHHHHHHH
Q 012456 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG-------NGVVNYEEFKQRM 390 (463)
Q Consensus 338 g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~-------~g~I~~~EF~~~l 390 (463)
+.||+.||.++=+-+. -+...+++++++|..+| .+.|||+.|...|
T Consensus 6 ~~lsp~eF~qLq~y~e-------ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm 58 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE-------YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFM 58 (138)
T ss_dssp S-S-HHHHHHHHHHHH-------H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHH
T ss_pred eccCHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHH
Confidence 6899999988765544 46678999999996554 5799999996555
No 134
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=65.64 E-value=8.9 Score=42.48 Aligned_cols=66 Identities=11% Similarity=-0.039 Sum_probs=52.5
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCC-----HHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLS-----FQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~-----~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
....+++.|+.+|+... |.++..++..+|..+|. ..- .++...++...|.++-|+++|.||...|-
T Consensus 745 v~~ElrAle~~~~~~d~-~aa~~e~~~~~Lmslg~-----~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~ 815 (890)
T KOG0035|consen 745 VLDELRALENEQDKIDG-GAASPEELLRCLMSLGY-----NTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLE 815 (890)
T ss_pred HHHHHHHHHhHHHHhhc-ccCCHHHHHHHHHhcCc-----ccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhh
Confidence 34668899999999988 99999999999999984 322 23345566777888889999999987663
No 135
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=62.25 E-value=7.4 Score=31.51 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=25.9
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHh
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQ 351 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~ 351 (463)
...+..++...|.|++ |+++..||.-||.-
T Consensus 42 ~~~L~~IW~LaD~~~d-G~L~~~EF~iAm~L 71 (104)
T PF12763_consen 42 RDVLAQIWNLADIDND-GKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHHHH-SSSS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCC-CcCCHHHHHHHHHH
Confidence 4678899999999999 99999999998864
No 136
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=61.09 E-value=7.4 Score=35.10 Aligned_cols=48 Identities=17% Similarity=0.369 Sum_probs=32.7
Q ss_pred CCHHHH---HHHHHhhCCCCCceeehHHHHHHHhc----------cccccccccccCCCcc
Q 012456 361 LSFQET---DDLWAQADVDGNGVVNYEEFKQRMWN----------LSCSAQIENNCNDNME 408 (463)
Q Consensus 361 ~~~~~~---~~l~~~~D~d~~g~I~~~EF~~~l~~----------~~~~~~~~~~~~~~~~ 408 (463)
++..+| ..+|+.+|.|.||.||+.|...+|-. +......+.+..|.+.
T Consensus 93 FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklS 153 (244)
T KOG0041|consen 93 FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLS 153 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchh
Confidence 444444 56899999999999999999655511 3334556666666553
No 137
>PF14658 EF-hand_9: EF-hand domain
Probab=56.58 E-value=15 Score=27.09 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=27.5
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHh
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQ 351 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~ 351 (463)
...+.++-+.+|+++.+|.|+.+.|+.+|+.
T Consensus 34 e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 34 ESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4578899999999997799999999999975
No 138
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=55.51 E-value=30 Score=35.68 Aligned_cols=54 Identities=15% Similarity=0.125 Sum_probs=39.3
Q ss_pred ccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhc
Q 012456 331 FKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 392 (463)
Q Consensus 331 ~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~ 392 (463)
-|.-+| |-|+.+||+..=.-+ --.+..-+..+.-||+.++|.++|++|...+.+
T Consensus 83 aD~tKD-glisf~eF~afe~~l-------C~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 83 ADQTKD-GLISFQEFRAFESVL-------CAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred hhhccc-ccccHHHHHHHHhhc-------cCchHHHHHHHHHhcccCCCceehHHHHHHHhc
Confidence 366677 899999998653221 133555677889999999999999999766643
No 139
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.15 E-value=11 Score=37.34 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=53.5
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHH-HHHHHHhhCCCCCceeehHHHHHHHhc
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQE-TDDLWAQADVDGNGVVNYEEFKQRMWN 392 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~-~~~l~~~~D~d~~g~I~~~EF~~~l~~ 392 (463)
...+++.+|+..|+.++ |+|+.+-|+.+|..++. ..++.+ |..+=+.+|...-|.|-.+.|+..+..
T Consensus 307 ~s~q~rR~f~a~d~~d~-nfis~s~~~~vm~~~N~-----~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~p 374 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDN-NFISCSGLQIVMTALNR-----LVSEPAYVMLMRQPLDPESLGIILLEDFLGEFFP 374 (449)
T ss_pred CCHHHHhhhhccCccCC-CeeecHHHHHHHHHhcc-----cccCHHHHHHhcCccChhhcceEEeccccccccC
Confidence 46789999999999999 99999999999999884 455444 444445578888899998888766654
No 140
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.95 E-value=4.5 Score=45.31 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=57.3
Q ss_pred HHHhhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 315 CQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 315 y~~~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
++.........++|...|.+++ |.|+-.+....+..-| ++...+...|...|..+.|.+++.||.-.+
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~d-G~I~s~~~~~~f~~~g-------l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDND-GSISSNEARNIFLPFG-------LSKPRLAHVWLLADTQNTGTLSKDEFALAM 343 (847)
T ss_pred ccChHHHHHHHHHHHhccccCC-CcccccccccccccCC-------CChhhhhhhhhhcchhccCcccccccchhh
Confidence 3444444556679999999999 9999999999888744 888999999999999999999999997655
No 141
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.24 E-value=26 Score=38.08 Aligned_cols=53 Identities=25% Similarity=0.385 Sum_probs=44.0
Q ss_pred HhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHH
Q 012456 326 DAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFK 387 (463)
Q Consensus 326 ~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~ 387 (463)
..|..+. -+. |+||-..-+.+|.+-| +...-+..+|...|.|.||++|-.||-
T Consensus 20 ~qF~~Lk-p~~-gfitg~qArnfflqS~-------LP~~VLaqIWALsDldkDGrmdi~EfS 72 (1118)
T KOG1029|consen 20 AQFGQLK-PGQ-GFITGDQARNFFLQSG-------LPTPVLAQIWALSDLDKDGRMDIREFS 72 (1118)
T ss_pred HHHhccC-CCC-CccchHhhhhhHHhcC-------CChHHHHHHHHhhhcCccccchHHHHH
Confidence 4455553 345 9999999999998866 677778999999999999999999994
No 142
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=50.78 E-value=33 Score=23.16 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 342 HSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 342 ~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
.+|...+|..|| +++.+++..+..+.. ...++.+|.++..
T Consensus 3 ~~d~~~AL~~LG-------y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 3 LEDALEALISLG-------YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHHTT-------S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHHcC-------CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 368889999998 889999999999875 4446677776544
No 143
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=47.85 E-value=20 Score=37.77 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=41.9
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHH
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQ 388 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~ 388 (463)
...-+.++|..||.|+| |.++..||+.++...+- +.|..-..++.-.. +..|.++|+-|+.
T Consensus 313 ~~~Fl~~~f~~~D~d~D-g~L~p~El~~LF~~~P~-~pW~~~~~~~~t~~------~~~G~ltl~g~l~ 373 (625)
T KOG1707|consen 313 GYRFLVDVFEKFDRDND-GALSPEELKDLFSTAPG-SPWTSSPYKDSTVK------NERGWLTLNGFLS 373 (625)
T ss_pred HHHHHHHHHHhccCCCC-CCcCHHHHHHHhhhCCC-CCCCCCccccccee------cccceeehhhHHH
Confidence 44557889999999999 99999999999998652 11111122221111 2578999999964
No 144
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=45.53 E-value=82 Score=24.74 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=39.5
Q ss_pred hHhHhhhhccccCCCCcccHHHHHHHHHhc----ccCCCC--CCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhc
Q 012456 323 AENDAFAFFKADNNGDVITHSAFCEALRQV----NLAGLP--YGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 392 (463)
Q Consensus 323 ~~~~~F~~~D~d~~~g~I~~~el~~~l~~l----g~~~~~--~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~ 392 (463)
..+-+|+.+ .|.+ |.++..-|...|+.+ ...|+. ..-.+..++..|... ...-.|+.++|+..|..
T Consensus 4 KyRylFsli-sd~~-g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 4 KYRYLFSLI-SDSN-GCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHH-S-TT-S-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHH-cCCC-CCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 456677777 6777 999999988887643 101221 223677788888886 34567999999988853
No 145
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=43.91 E-value=23 Score=28.26 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=38.0
Q ss_pred CcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhc
Q 012456 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWN 392 (463)
Q Consensus 338 g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~ 392 (463)
|.++..|...+-.-+.- ...+++++.+.++..+........++.+|.+.+..
T Consensus 14 G~v~~~E~~~i~~~l~~---~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 14 GEYDEEERAAIDRLLAE---RFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred CCCCHHHHHHHHHHHHH---HhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 88999997665543210 01478899999999888777777899999877643
No 146
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=42.32 E-value=33 Score=36.63 Aligned_cols=60 Identities=13% Similarity=0.224 Sum_probs=49.0
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHH
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEF 386 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF 386 (463)
...-+..+|+.+|.+.+ |.|+..+|-.+|..+-- .--.+.++-+++.+|.+++ ..+-+|-
T Consensus 553 s~~~~~rlF~l~D~s~~-g~Ltf~~lv~gL~~l~~-----~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMT-GLLTFKDLVSGLSILKA-----GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhcccCCc-ceeEHHHHHHHHHHHHh-----hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 34457789999999999 99999999999987642 3445667889999999999 8888776
No 147
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=41.66 E-value=26 Score=34.38 Aligned_cols=77 Identities=10% Similarity=0.081 Sum_probs=58.0
Q ss_pred HHHHHHHhhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 311 SIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 311 ~~idy~~~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
.+.+..|..-...++++|+.+=.|.+ +....+.+..+-..+. ..-.+....++.-||..+|.|.||.++-.|...+-
T Consensus 200 ~Ct~qeL~~lg~RL~dWF~~lhe~s~-~~~~~ss~~~~~~~~d--~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ 276 (434)
T KOG3555|consen 200 ACTDQELRRLGNRLRDWFKALHEDSS-QNDKTSSLHSAASGFD--TSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE 276 (434)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhhh-ccCcchhhcccccccc--cccCcchhhhhhhhhhccccccccccCHHHhhhhh
Confidence 35566666677789999999988887 7777777776644432 11135778899999999999999999999995433
No 148
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.72 E-value=83 Score=26.81 Aligned_cols=60 Identities=23% Similarity=0.161 Sum_probs=31.0
Q ss_pred CCceEEEEEeecCCCCCCCchhh-HHHHHHHHHHHHHHHHhhcCC-C------CCcEEEeecCCCccccc
Q 012456 182 GQQEILIVNTHLLFPHDSSLSVV-RLHQVYKILQYLELYQTENKL-N------HIPIILCGDWNGSKRGH 243 (463)
Q Consensus 182 ~~~~v~v~ntHL~~~~~~~~~~~-R~~Q~~~l~~~l~~~~~~~~~-~------~~pvIl~GDFN~~p~s~ 243 (463)
.+..+..++.|+.++.. .... |..-...+.+...-....... + ..-+|+.||+|......
T Consensus 57 ~~~~~~~v~~hl~~~~~--~~~~~r~~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~ 124 (145)
T KOG0565|consen 57 SQTSFCFVISHLTSGVH--KVYERRNEDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGP 124 (145)
T ss_pred cCceEEEEEecccccch--hhHHHhhccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCc
Confidence 56789999999976432 1222 222233333332221111100 0 12478999999865543
No 149
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.52 E-value=37 Score=28.97 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=42.8
Q ss_pred HhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 326 DAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 326 ~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
-+|+..+.|| .++.+|..+...-+. +...++.+++..++.....-+...|||..|-..|.
T Consensus 34 Llf~Vm~ADG---~v~~~E~~a~r~il~---~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 34 LLFHVMEADG---TVSESEREAFRAILK---ENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHhccc---CcCHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5788887775 588888655433221 11368999999999888777788899988865554
No 150
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.15 E-value=27 Score=35.90 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=28.0
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHh
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQ 351 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~ 351 (463)
.+.++..++.+.|.|.| |.++.+||+.+|.-
T Consensus 263 pi~ELshIWeLsD~d~D-GALtL~EFcAAfHL 293 (737)
T KOG1955|consen 263 PIEELSHIWELSDVDRD-GALTLSEFCAAFHL 293 (737)
T ss_pred chHHHHHHHhhcccCcc-ccccHHHHHhhHhh
Confidence 56788899999999999 99999999999864
No 151
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=34.13 E-value=34 Score=30.28 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=26.0
Q ss_pred hhHhHhhhhccccCCCCcccHHHHHHHHHhccc
Q 012456 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNL 354 (463)
Q Consensus 322 ~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~ 354 (463)
..++.=-.+||.|+| |.|.+.|--.+++.||+
T Consensus 7 T~LQqHvaFFDrd~D-GiI~P~dTy~GFraLGf 38 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKD-GIIYPWDTYQGFRALGF 38 (174)
T ss_pred cHHhhhhceeCCCCC-eeECHHHHHHHHHHhCC
Confidence 345556678999999 99999998888887764
No 152
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.30 E-value=56 Score=32.74 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=46.1
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHH
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFK 387 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~ 387 (463)
......++|-.+.+- + |+||-..-++-|.. .++...-+-++|+..|.|.||.+|-+||.
T Consensus 442 dk~~yde~fy~l~p~-~-gk~sg~~ak~~mv~-------sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 442 DKPTYDEIFYTLSPV-N-GKLSGRNAKKEMVK-------SKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred CCcchHhhhhccccc-C-ceeccchhHHHHHh-------ccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 334455677777554 3 88998877777766 35778888999999999999999999994
No 153
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=32.85 E-value=41 Score=25.77 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=23.3
Q ss_pred CcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceee
Q 012456 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVN 382 (463)
Q Consensus 338 g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~ 382 (463)
|+||++|+..+|... .++.++++.++..+...|=..++
T Consensus 20 G~lT~~eI~~~L~~~-------~~~~e~id~i~~~L~~~gI~Vvd 57 (82)
T PF03979_consen 20 GYLTYDEINDALPED-------DLDPEQIDEIYDTLEDEGIEVVD 57 (82)
T ss_dssp SS-BHHHHHHH-S-S----------HHHHHHHHHHHHTT----B-
T ss_pred CcCCHHHHHHHcCcc-------CCCHHHHHHHHHHHHHCCCEEec
Confidence 899999999999763 48889999999988766544443
No 154
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=32.66 E-value=60 Score=23.75 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=31.3
Q ss_pred CcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCC
Q 012456 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG 377 (463)
Q Consensus 338 g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~ 377 (463)
+-++..++.+.|..-|. .++++.|+..++.+|.+|
T Consensus 12 ~P~g~~~l~~~L~~~g~-----~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 12 KPLGRKQLAEELKLRGE-----ELSEEAVRRRLRAMERDG 46 (66)
T ss_pred CCCCHHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHCC
Confidence 56999999999998775 899999999999999876
No 155
>PLN02230 phosphoinositide phospholipase C 4
Probab=32.34 E-value=1.2e+02 Score=32.53 Aligned_cols=69 Identities=10% Similarity=0.153 Sum_probs=48.9
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhC-------CCCCceeehHHHHHHHhcc
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQAD-------VDGNGVVNYEEFKQRMWNL 393 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D-------~d~~g~I~~~EF~~~l~~~ 393 (463)
-.++..+|..+- .+. +.++.++|...|..-. +.....+.++++.++..+- .-+.+.++.+.|..+|+..
T Consensus 28 ~~ei~~lf~~~s-~~~-~~mt~~~l~~FL~~~Q--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 28 VADVRDLFEKYA-DGD-AHMSPEQLQKLMAEEG--GGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred cHHHHHHHHHHh-CCC-CccCHHHHHHHHHHhC--CCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 356888999884 444 7999999999998743 1112356777888886542 1234569999999988764
No 156
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=32.22 E-value=21 Score=32.18 Aligned_cols=56 Identities=13% Similarity=0.215 Sum_probs=39.8
Q ss_pred hhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHH
Q 012456 328 FAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 328 F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l 390 (463)
|-.+|+-.-||++|..||.-+ ++ - --+-+.-+...|.-+|.|+||.|..+|+-..+
T Consensus 193 f~qld~~p~d~~~sh~el~pl-~a-p-----~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPL-RA-P-----LIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccc-cC-C-----cccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 556776654499999998643 22 1 11234557789999999999999999995444
No 157
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=31.62 E-value=1.1e+02 Score=25.70 Aligned_cols=70 Identities=17% Similarity=0.093 Sum_probs=40.8
Q ss_pred hhhHhHhhhhccccCC-CCcccHHHHHHHHHhcc--cC-CCCCCCC------HH----HHHHHHHhhCCCCCceeehHHH
Q 012456 321 SLAENDAFAFFKADNN-GDVITHSAFCEALRQVN--LA-GLPYGLS------FQ----ETDDLWAQADVDGNGVVNYEEF 386 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~-~g~I~~~el~~~l~~lg--~~-~~~~~~~------~~----~~~~l~~~~D~d~~g~I~~~EF 386 (463)
...+.++|+...-+.. +..|+..|+..+|..+- +. ..|.... +. -+.-++..+|.+++|+|..-.|
T Consensus 40 l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~ 119 (127)
T PF09068_consen 40 LSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSF 119 (127)
T ss_dssp HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHH
T ss_pred HHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHH
Confidence 4456677777654432 37899999999988653 10 1111111 12 2345778899999999999999
Q ss_pred HHHH
Q 012456 387 KQRM 390 (463)
Q Consensus 387 ~~~l 390 (463)
...+
T Consensus 120 KvaL 123 (127)
T PF09068_consen 120 KVAL 123 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6555
No 158
>PF09550 DUF2376: Conserved hypothetical phage protein (DUF2376); InterPro: IPR019056 Gene transfer agents belong to a group of unusual genetic exchange elements []. GTAs are unusual in the sense they have the structure of a small tailed phage, which do not possess typical phage traits such as host cell lysis and infectious transmission of the GTA genes. In the Rhodobacter capsulatus GTA the GTA particles contain random 4.5 kb DNA fragments of the R.capsulatus genome. These DNA fragments can be transmitted to other cells where allelic conversion may occur via homologous recombination. The genes coding for the GTA particles are of two distinct types: the first is a cluster of genes reminiscent of a cryptyic prophage, where a number of the genes have similarity to known phage structural genes; the second type consists of two genes coding for a cellular two-component signal transduction system, which regulates the transcription of the GTA structural gene cluster in a growth phase dependent manner []. This entry is represented by ORFg10.1 (RCAP_rcc01693) of the Gene Transfer Agent (GTA) of Rhodobacter capsulatus [see Fig.1, in ]. The function is not known.
Probab=31.21 E-value=86 Score=20.93 Aligned_cols=32 Identities=19% Similarity=0.127 Sum_probs=22.9
Q ss_pred cccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhh
Q 012456 339 VITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 373 (463)
Q Consensus 339 ~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~ 373 (463)
.+|..|| .+|...+ +...+++..+++++|..+
T Consensus 10 ~lTP~El-~a~~g~~--~~~~pl~R~~L~~Lm~~~ 41 (43)
T PF09550_consen 10 RLTPAEL-RAMLGAD--AGAAPLDRAELDALMRRF 41 (43)
T ss_pred hcCHHHH-HHhcCcc--cCCCCCCHHHHHHHHHHC
Confidence 4788899 6665443 223678899999998875
No 159
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=30.59 E-value=1.4e+02 Score=26.98 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhhhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCC
Q 012456 308 AVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD 376 (463)
Q Consensus 308 ~~~~~idy~~~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d 376 (463)
.+...+.|+++..-.. |. +..|.+ |+++.+||-+.+..-+. .++.++++++...-|+.
T Consensus 7 ~lSK~Ls~lLRH~p~~----~g-L~~d~~-G~v~v~dLL~~~~~~~~-----~~t~~~i~~vV~~~~K~ 64 (186)
T PF01885_consen 7 KLSKALSYLLRHGPEK----EG-LVMDPD-GWVSVDDLLRALRFKGL-----WVTEEDIREVVETDDKQ 64 (186)
T ss_dssp -HHHHHHHHHHT-TGG----GT-----TT---EEHHHHHHHHHHT-T-----T--HHHHHHHHHH-SS-
T ss_pred HHHHHHHHHhCCChhh----cC-CccCCC-CCEeHHHHHHHHHHcCC-----CCCHHHHHHHHhhCCCC
Confidence 5667788888554322 11 345777 99999999999887553 68899999999886543
No 160
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=30.22 E-value=62 Score=34.60 Aligned_cols=16 Identities=44% Similarity=0.659 Sum_probs=13.3
Q ss_pred CCcCCCCCceeEEeec
Q 012456 441 NYSLSDHAPLSVVFSP 456 (463)
Q Consensus 441 ~~~~s~~~~l~~~~~~ 456 (463)
++..|||-|..+.|.-
T Consensus 576 ei~~SDHRPV~A~F~v 591 (621)
T PLN03191 576 EIRLSDHRPVSSMFLV 591 (621)
T ss_pred CcccCCchhcceEEEE
Confidence 4567999999999963
No 161
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=28.47 E-value=34 Score=28.10 Aligned_cols=28 Identities=11% Similarity=0.287 Sum_probs=20.5
Q ss_pred hhhhHhHhhhhccccCCCCcccHHHHHHH
Q 012456 320 ASLAENDAFAFFKADNNGDVITHSAFCEA 348 (463)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~g~I~~~el~~~ 348 (463)
....+...|+..|.|+| |.||..|...+
T Consensus 86 ~e~C~~~F~~~CD~n~d-~~Is~~EW~~C 113 (113)
T PF10591_consen 86 PEHCARPFFRSCDVNKD-GKISLDEWCNC 113 (113)
T ss_dssp TGGGHHHHHHHH-TT-S-SSEEHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCC-CCCCHHHHccC
Confidence 34456778899999999 99999998653
No 162
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=28.47 E-value=1.6e+02 Score=26.16 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=43.5
Q ss_pred hhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCC--HHHHHHHHHhhCCCCCceeehHHHHHHHhcccccc
Q 012456 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLS--FQETDDLWAQADVDGNGVVNYEEFKQRMWNLSCSA 397 (463)
Q Consensus 322 ~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~--~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~~~~~~ 397 (463)
....++|..+++.+. +.+|..|+.+.++.-.....+..-. .-|-..++. +-.|.+|.+.-+.- +.++..+.+.
T Consensus 96 ~kFe~iF~kya~~~~-d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~-L~~d~dG~l~Ke~i-R~vYDGSlF~ 170 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGP-DALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYI-LAKDKDGFLSKEDI-RGVYDGSLFY 170 (174)
T ss_pred HHHHHHHHHhCCCCC-CCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHH-HHcCcCCcEeHHHH-hhhcchHHHH
Confidence 346689999998888 8999999999998632101111111 222222222 23566888866655 6666544443
No 163
>PLN02952 phosphoinositide phospholipase C
Probab=27.64 E-value=2.1e+02 Score=30.84 Aligned_cols=82 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred hhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhh-------CCCCCceeehHHHHHHHhccc
Q 012456 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA-------DVDGNGVVNYEEFKQRMWNLS 394 (463)
Q Consensus 322 ~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~-------D~d~~g~I~~~EF~~~l~~~~ 394 (463)
.++..+|..+ ..+. +.++.++|...|+... ++. ..+.++++.++..+ ...+.+.++++.|...|....
T Consensus 38 ~ei~~lf~~~-~~~~-~~mt~~~l~~FL~~~Q--~e~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s~~ 112 (599)
T PLN02952 38 DDVKDVFCKF-SVGG-GHMGADQLRRFLVLHQ--DEL-DCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLYDD 112 (599)
T ss_pred HHHHHHHHHH-hCCC-CccCHHHHHHHHHHhC--CCc-CCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcCcc
Q ss_pred cccccccccCCCcc
Q 012456 395 CSAQIENNCNDNME 408 (463)
Q Consensus 395 ~~~~~~~~~~~~~~ 408 (463)
...........+.+
T Consensus 113 ~~~p~~~~v~qdm~ 126 (599)
T PLN02952 113 LNGPITPQVHHDMT 126 (599)
T ss_pred ccccccccccccCC
No 164
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=27.55 E-value=1.7e+02 Score=19.99 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=30.0
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHh
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQ 372 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~ 372 (463)
...+..+|.. + .+.+..++..+-..+| ++..+|..+|..
T Consensus 12 ~~~Le~~f~~-----~-~~P~~~~~~~la~~~~-------l~~~qV~~WF~n 50 (59)
T cd00086 12 LEELEKEFEK-----N-PYPSREEREELAKELG-------LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHh-----C-CCCCHHHHHHHHHHHC-------cCHHHHHHHHHH
Confidence 3445666766 4 6799999999988887 788999988864
No 165
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=27.54 E-value=1.6e+02 Score=28.61 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=11.8
Q ss_pred CCcEEEeecCCCcc
Q 012456 227 HIPIILCGDWNGSK 240 (463)
Q Consensus 227 ~~pvIl~GDFN~~p 240 (463)
+..+|+||+|.+.|
T Consensus 64 P~~fVL~GnF~S~p 77 (291)
T PTZ00235 64 PVGFIFMGDFISLK 77 (291)
T ss_pred CeEEEEecCccCCc
Confidence 44589999999987
No 166
>PLN02222 phosphoinositide phospholipase C 2
Probab=26.71 E-value=1.4e+02 Score=31.97 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=49.2
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCC-CCCceeehHHHHHHHhcc
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADV-DGNGVVNYEEFKQRMWNL 393 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~-d~~g~I~~~EF~~~l~~~ 393 (463)
..++..+|..+-. + +.++.++|...|.... +. ...+.+.++.+|..+.. -..+.++++.|..+|...
T Consensus 24 ~~ei~~if~~~~~--~-~~mt~~~l~~FL~~~Q--~~-~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 24 PREIKTIFEKYSE--N-GVMTVDHLHRFLIDVQ--KQ-DKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred cHHHHHHHHHhcC--C-CCcCHHHHHHHHHHhc--CC-ccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 3467778887743 5 7899999999998754 11 23578888999988632 246779999999998753
No 167
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=26.52 E-value=90 Score=26.82 Aligned_cols=55 Identities=11% Similarity=0.338 Sum_probs=41.1
Q ss_pred hhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHH--HHHhhCCCCCceeehHHHHHHH
Q 012456 329 AFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDD--LWAQADVDGNGVVNYEEFKQRM 390 (463)
Q Consensus 329 ~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~--l~~~~D~d~~g~I~~~EF~~~l 390 (463)
..|-.||. |.+|.++|-.++.-+. .+.+.+++. .++-+|-|+|+.|--......+
T Consensus 78 e~FSeDG~-GnlsfddFlDmfSV~s------E~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l 134 (189)
T KOG0038|consen 78 EVFSEDGR-GNLSFDDFLDMFSVFS------EMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTL 134 (189)
T ss_pred HHhccCCC-CcccHHHHHHHHHHHH------hhChHHhhhhheeEEeecCCCCcccHHHHHHHH
Confidence 34456999 9999999999887655 345555543 5677899999999888776555
No 168
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=23.71 E-value=93 Score=26.58 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=42.7
Q ss_pred CCCCcccHHHHHHHHHhc----ccCCCCCCCCHHHHHHHHHhhCCCCCce-eehHHHHHH
Q 012456 335 NNGDVITHSAFCEALRQV----NLAGLPYGLSFQETDDLWAQADVDGNGV-VNYEEFKQR 389 (463)
Q Consensus 335 ~~~g~I~~~el~~~l~~l----g~~~~~~~~~~~~~~~l~~~~D~d~~g~-I~~~EF~~~ 389 (463)
|+ -.||.+||.+++..- .+.|.+-.+..++++.+.+.+..-+.+. ++..|-++.
T Consensus 80 Gd-~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GD-EELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CC-EECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 45 689999999999852 3446777899999999999998876664 888877654
No 169
>PF11738 DUF3298: Protein of unknown function (DUF3298); InterPro: IPR021729 This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed. ; PDB: 2HHI_A 3S5T_A 3CYG_B.
Probab=22.71 E-value=43 Score=24.74 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=18.3
Q ss_pred CCCCcCCCCCceeEEeeceeccC
Q 012456 439 PENYSLSDHAPLSVVFSPVRMQS 461 (463)
Q Consensus 439 ~~~~~~s~~~~l~~~~~~~~~~~ 461 (463)
+.++.++++| |++.|.|..+.+
T Consensus 43 ~~~f~l~~~g-l~~~f~~Yeiap 64 (78)
T PF11738_consen 43 SQNFYLTDDG-LVFYFNPYEIAP 64 (78)
T ss_dssp CSSEEEESSE-EEEEE-TTSSS-
T ss_pred CCCEEEECCE-EEEEECCccccC
Confidence 8899999999 999999987765
No 170
>PLN02228 Phosphoinositide phospholipase C
Probab=22.21 E-value=2.4e+02 Score=30.28 Aligned_cols=67 Identities=12% Similarity=0.269 Sum_probs=48.3
Q ss_pred hhhHhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCC----CCceeehHHHHHHHhcc
Q 012456 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD----GNGVVNYEEFKQRMWNL 393 (463)
Q Consensus 321 ~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d----~~g~I~~~EF~~~l~~~ 393 (463)
-.++..+|..+-. + +.++.++|...|+... +. ...+.+.+++++..+... ..|.++.+.|...|...
T Consensus 23 ~~ei~~if~~~s~--~-~~~t~~~~~~FL~~~Q--~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 23 PVSIKRLFEAYSR--N-GKMSFDELLRFVSEVQ--GE-RHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred cHHHHHHHHHhcC--C-CccCHHHHHHHHHHhc--CC-ccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 3567778877742 3 6799999999998753 11 135677788999887543 34789999999888653
No 171
>PRK00523 hypothetical protein; Provisional
Probab=21.81 E-value=2e+02 Score=21.51 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=33.6
Q ss_pred HhHhhhhccccCCCCcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhh
Q 012456 324 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 373 (463)
Q Consensus 324 ~~~~F~~~D~d~~~g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~ 373 (463)
.+..|...=+++. -|+.+-++..+.++| .++|+.+++++++..
T Consensus 26 ark~~~k~l~~NP--pine~mir~M~~QMG-----qKPSekki~Q~m~~m 68 (72)
T PRK00523 26 SKKMFKKQIRENP--PITENMIRAMYMQMG-----RKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHHHHHCc--CCCHHHHHHHHHHhC-----CCccHHHHHHHHHHH
Confidence 4455554434443 599999999999999 489999999999876
No 172
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=21.66 E-value=2.5e+02 Score=20.76 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhhhhHhHhhhhccccCCCCcccHHHHHHHHHh
Q 012456 310 FSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQ 351 (463)
Q Consensus 310 ~~~idy~~~~~~~~~~~~F~~~D~d~~~g~I~~~el~~~l~~ 351 (463)
...+.|.+.=...++.++|+.-| =.||.+|+...|++
T Consensus 5 LrkLRyal~l~d~~m~~if~l~~-----~~vs~~el~a~lrk 41 (68)
T PF07308_consen 5 LRKLRYALDLKDDDMIEIFALAG-----FEVSKAELSAWLRK 41 (68)
T ss_pred HHHHHHHHcCChHHHHHHHHHcC-----CccCHHHHHHHHCC
Confidence 34455555444555666666643 24666666666665
No 173
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=21.22 E-value=2.2e+02 Score=20.80 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=27.2
Q ss_pred cccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhh
Q 012456 339 VITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 373 (463)
Q Consensus 339 ~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~ 373 (463)
-|+.+-++..+.++| .++|+..++.+++..
T Consensus 31 pine~mir~M~~QMG-----~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 31 PINEKMIRAMMMQMG-----RKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCHHHHHHHHHHhC-----CCccHHHHHHHHHHH
Confidence 699999999999999 489999999998864
No 174
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=20.66 E-value=43 Score=20.34 Aligned_cols=18 Identities=39% Similarity=0.479 Sum_probs=14.3
Q ss_pred HHHHHhhCCCCCceeehH
Q 012456 367 DDLWAQADVDGNGVVNYE 384 (463)
Q Consensus 367 ~~l~~~~D~d~~g~I~~~ 384 (463)
+.++.+-|+|+|-+|+.+
T Consensus 2 ~~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 2 RSLLEQEDTDGNFQITIE 19 (30)
T ss_pred hhHhhccccCCCcEEEEe
Confidence 567888899999888764
No 175
>COG5562 Phage envelope protein [General function prediction only]
Probab=20.63 E-value=59 Score=27.46 Aligned_cols=51 Identities=12% Similarity=0.060 Sum_probs=31.7
Q ss_pred CcccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHhcccccc
Q 012456 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLSCSA 397 (463)
Q Consensus 338 g~I~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~~~~~~~ 397 (463)
|.|..+.++....- . ..+...-|+ ..+..+..|+++|+||+..+|.-..+.
T Consensus 55 ~~Il~~g~k~~~~V-~-----~~~n~~~i~---~al~~~qsGqttF~ef~~~la~AGVfr 105 (137)
T COG5562 55 GVILIKGVKKVVGV-A-----EVFNTTLIK---TALRRHQSGQTTFEEFCSALAEAGVFR 105 (137)
T ss_pred CEEEeeccccccce-e-----cccCHHHHH---HHHHHHhcCCccHHHHHHHHHhCCeEE
Confidence 56666666554322 1 123344333 344556789999999999999765553
No 176
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=20.32 E-value=44 Score=28.13 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=34.1
Q ss_pred CcccHHHHHHHHHhc-ccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHHHh
Q 012456 338 DVITHSAFCEALRQV-NLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMW 391 (463)
Q Consensus 338 g~I~~~el~~~l~~l-g~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~l~ 391 (463)
|.|+.+|...+..-+ .. ..++..+.+.++..++.-....+++.+|+..+-
T Consensus 38 G~v~~~E~~~i~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 88 (140)
T PF05099_consen 38 GEVDPEEIEAIRQLLAER----FGLSPEEAEELIELADELKQEPIDLEELLRELR 88 (140)
T ss_dssp SS--CHHHHHHHHHHHHC----GCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHh----hCCCHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 789999988776655 11 146677778888877766666788888876663
No 177
>PF09966 DUF2200: Uncharacterized protein conserved in bacteria (DUF2200); InterPro: IPR014580 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3C9P_A.
Probab=20.18 E-value=1.2e+02 Score=24.53 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=24.2
Q ss_pred cHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhCCCCCceeehHHHHHH
Q 012456 341 THSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQR 389 (463)
Q Consensus 341 ~~~el~~~l~~lg~~~~~~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~ 389 (463)
|.+|+.+.+..|- ..++++++.++.. .++|++|...
T Consensus 24 t~~Evd~vi~WLT------Gy~~~~l~~~~~~-------~~~~~~FF~~ 59 (111)
T PF09966_consen 24 TKEEVDQVIRWLT------GYDQEELQAQIES-------KVTFETFFAQ 59 (111)
T ss_dssp -HHHHHHHHHHHH---------HHHHHHHTTS---------BHHHHHHT
T ss_pred CHHHHHHHHHHHh------cCCHHHHHHHHHc-------CCCHHHHHHH
Confidence 6889999999875 6888888887643 6899999653
Done!